HHsearch alignment of GI: 254780397 and MMDB domain: 1v53_A_
>1v53_A (A:) 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans}
Probab=96.18 E-value=0.0049 Score=38.26 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=82.4
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEE
Q ss_conf 201024567888989999985313456707999-6366544531000012102445888642158764-34555112100
Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFH 258 (343)
Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~ 258 (343)
+.+|++.+.+-++...+.-++. +.++-+. ==|=-.--.| +..-+.+.+++ ..++ .-..-.|++..
T Consensus 160 ~~~t~~~~~ri~r~AF~~A~~~----~k~vt~v~KaNv~~~~~g--------~~~~~~~~~~e-~p~i~~~~~~vDa~~~ 226 (366)
T 1v53_A 160 LAYTREEIERIIEKAFQLAQIR----RKKLASVDKANVLESSRM--------WREIAEETAKK-YPDVELSHMLVDSTSM 226 (366)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT----TSEEEEEECTTTCHHHHH--------HHHHHHHHHTT-CTTSEEEEEEHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCH--------HHHHHHHHHHH-CCCEEEEEEEHHHHHH
T ss_conf 0000120235556789988746----991014313530024622--------87999999814-8986999988477788
Q ss_pred CC--CCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 02--23667689998--5----1202255554144772799920876475588755222133686683899999999999
Q gi|254780397|r 259 HS--ARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343)
Q Consensus 259 ~~--~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343)
.- +-.+||++|+. | .|++..-.-.+++--+.|+-- =-..---|-||||.|||||++|||.+++.|.-+-++
T Consensus 227 ~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglG~~ps~nig~-d~~a~fE~~HGsApdiaGk~~aNP~a~Ils~ammL~ 305 (366)
T 1v53_A 227 QLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRS-DRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLR 305 (366)
T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHTTTTSCTTSCEEEEECS-SSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9873234455463204887788899998726764220100168-732685376775455369997596999999999998
Q ss_pred HHH
Q ss_conf 998
Q gi|254780397|r 331 LGY 333 (343)
Q Consensus 331 ~~~ 333 (343)
..-
T Consensus 306 ~lg 308 (366)
T 1v53_A 306 YSF 308 (366)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 627