HHsearch alignment of GI: 254780397 and MMDB domain: 1vlc_A_

>1vlc_A (A:) 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima}
Probab=95.79  E-value=0.007  Score=37.30  Aligned_cols=135  Identities=14%  Similarity=0.176  Sum_probs=82.2

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf             2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH  259 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~  259 (343)
                      +.+|++.+.+-++...+.-++.   +++...|-==|=.        .-+--+.. +..+.-++-.+| .-..-.|++...
T Consensus       169 ~~~tr~~~eri~~~Af~~A~~~---~~~vt~v~K~nv~--------~~~g~f~~-~~~eva~~~p~i~~~~~~vD~~~~~  236 (366)
T 1vlc_A          169 MIYDRKTVERIARTAFEIAKNR---RKKVTSVDKANVL--------YSSMLWRK-VVNEVAREYPDVELTHIYVDNAAMQ  236 (366)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTT---TSEEEEEECTTTC--------HHHHHHHH-HHHHHHTTCTTSEEEEEEHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCE--------ECCHHHHH-HHHHHHHHCCCEEEEEEEHHHHHHH
T ss_conf             9951488899999999998648---9738999457750--------02188999-9999996679848998629899999


Q ss_pred             CC--CCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             22--366768999--85----1202255554144772799920876475588755222133686683899999999999
Q gi|254780397|r  260 SA--RQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       260 ~~--~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~  330 (343)
                      -.  -.+||++|+  ||    .|.+..-.-.+++--+.|+.   +---.-|-||||.||||+++|||.+|+-|.-+-++
T Consensus       237 lv~~P~~fdViv~~Nl~GDIlsD~~a~l~G~~G~~~sanig---~~~~fe~~HGsApdiaG~~~aNP~a~Ils~a~ML~  312 (366)
T 1vlc_A          237 LILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG---DKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLE  312 (366)
T ss_dssp             HHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES---SSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHH
T ss_pred             HHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHCCC---CHHEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             98666877589854177777778899985353202343148---30000026687124269986492999999999987