HHsearch results for GI: 254780397 and protein with PDBid: 1w0d_A

>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=96.80  E-value=0.00071  Score=42.37  Aligned_cols=140  Identities=12%  Similarity=0.130  Sum_probs=70.4

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf             2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH  259 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~  259 (343)
                      +.+|+..+.+-++...+.-++.   ++....|-==|=..-=.|+|=        -+.++.-++--++ .-..-.|++-..
T Consensus       149 ~~~t~~~~~RIar~Afe~A~~r---rk~vt~v~Kanv~~~t~glf~--------~~~~eva~~yp~i~~~~~~vD~~~~~  217 (337)
T 1w0d_A          149 SVNTAFGVRRVVADAFERARRR---RKHLTLVHKTNVLTFAGGLWL--------RTVDEVGECYPDVEVAYQHVDAATIH  217 (337)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHT---TSEEEEEECTTTSHHHHHHHH--------HHHHHHHTTCTTSEEEEEEHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHH--------HHHHHHHHHCCCCEEHHHHHHHHHHH
T ss_conf             6132677767789999999848---995699968872145779999--------99999886578734115758799998


Q ss_pred             --CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEEC-CEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             --22366768999--8512----022555541447727999208-76475588755222133686683899999999999
Q gi|254780397|r  260 --SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGL-PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       260 --~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GL-p~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~  330 (343)
                        .+-.+||++|+  ||=|    ++-.-.=.++.--+.|+--.- .+----|-||||.||||||+|||.+|+-|.-+-++
T Consensus       218 lv~~P~~fdViv~~Nl~GDilSDlaa~l~GglGl~psan~g~~~~~~a~fEp~HGsapdiaGk~iaNP~a~ils~ammL~  297 (337)
T 1w0d_A          218 MITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLS  297 (337)
T ss_dssp             HHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGGTTSSCSCCHHHHHHHHHHHH
T ss_pred             HCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             62598537679875156788999998861865325666667431331000356665054469996495999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780397|r  331 L  331 (343)
Q Consensus       331 ~  331 (343)
                      -
T Consensus       298 ~  298 (337)
T 1w0d_A          298 H  298 (337)
T ss_dssp             H
T ss_pred             H
T ss_conf             8