HHsearch results for GI: 254780397 and protein with PDBid: 1yco_A
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583}
Probab=98.14 E-value=0.00045 Score=43.54 Aligned_cols=203 Identities=21% Similarity=0.227 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 77887766430123430443223447776410132564789999834235886652112332211266530453133343
Q gi|254780397|r 101 ANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC 180 (343)
Q Consensus 101 ~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~ 180 (343)
++...|+.++++|++|++|.|=++..++..+.....+ +...+.....+++|...+=++.++ .|+.
T Consensus 56 ~~~~~a~~lv~~G~aD~lv~G~~~t~~~~~~~l~~i~---------~~~~~~~~~~~~~~~~~~~~~~~l------~D~g 120 (279)
T 1yco_A 56 AVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEH---------QLKNKPILSHVAMVELPAGKTFLL------TDCA 120 (279)
T ss_dssp HHHHHHHHHHHSTTCSEEEECSSCHHHHHHHHTCTTT---------CCBCSSSCEEEEEEECSSSCEEEE------ECSS
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHC---------CCCCCCEEEEEEEEEECCCCEEEE------EEEE
T ss_conf 9999999999769988899898883999999998726---------889986689999998049957999------7227
Q ss_pred HH--CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCHHHE
Q ss_conf 20--102456788898999998531345670799963665445310000121024458886421-587643455511210
Q gi|254780397|r 181 RI--LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN-DNKNIIGPLPADSMF 257 (343)
Q Consensus 181 ~~--it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~-~g~~v~GP~paDt~F 257 (343)
-. -+.+.+.+-........+ .||+..|+++++.-+ +.+.-+.+..+.-.-+.+..+. ....+.||...|.+.
T Consensus 121 ~N~~p~~e~L~~~a~~~~~~ak-~~g~~~~~v~ll~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ 195 (279)
T 1yco_A 121 MNIAPTQATLIEIVENAKEVAQ-KLGLHHPKIALLSAA----ENFNPKMPSSVLAKEVTAHFNDQQEATVFGPLSLDLAT 195 (279)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHH-HTTCSSCEEEEECSC----SSCCTTCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECC----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 8727679999999999999999-828999955888513----57789970799999999986543543235631112211
Q ss_pred E----------CCCCCCCCEEEEEECCHHHHHHHHHCCCCEEE---EEEEC--CEEEECCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 0----------02236676899985120225555414477279---99208--764755887552221336866838999
Q gi|254780397|r 258 H----------HSARQCYDVAICMYHDQALIPIKTLDFNQTVN---ITLGL--PFVRTSPDHGTAFDIAGSSLTQEESLV 322 (343)
Q Consensus 258 ~----------~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn---~t~GL--p~irtSpdHGTafdiagk~~a~~~s~~ 322 (343)
. ....+..|..+.--=+-|-+-+|++-+-.+.. +-+|+ |++-+| +-++.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~p~l~a~ni~~K~l~~l~~~~~Gg~llG~~~pVi~~s------------rs~s~~~i~ 263 (279)
T 1yco_A 196 SEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVGGTIVGTKVPVVLTS------------RSDSTESKF 263 (279)
T ss_dssp CHHHHHHTTCCSSCSSCCSEEECSSHHHHHHHHHHHHHHSCCEEEEEEESBSSCEEECC------------TTSCHHHHH
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECC------------CCCCHHHHH
T ss_conf 58888630689645423456655568877899999997189844210015898579899------------999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999852
Q gi|254780397|r 323 SALKIAAQLGYQK 335 (343)
Q Consensus 323 ~ai~~a~~~~~~~ 335 (343)
+++.+|+.+.+..
T Consensus 264 n~i~lA~~~v~~~ 276 (279)
T 1yco_A 264 HSLRFAMRQVHHH 276 (279)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999997642