Query gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 343 No_of_seqs 216 out of 2390 Neff 6.9 Searched_HMMs 23785 Date Mon May 30 10:25:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780397.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3lxy_A 4-hydroxythreonine-4-ph 100.0 0 0 877.3 27.6 327 2-336 6-333 (334) 2 1yxo_A 4-hydroxythreonine-4-ph 100.0 0 0 869.5 27.2 325 1-335 1-327 (328) 3 2hi1_A 4-hydroxythreonine-4-ph 100.0 0 0 862.0 25.8 324 1-332 4-330 (330) 4 1td9_A Phosphate acetyltransfe 99.0 9E-09 3.8E-13 71.8 14.3 286 3-330 21-326 (329) 5 1vmi_A Putative phosphate acet 99.0 4.7E-09 2E-13 73.5 12.4 287 5-334 27-337 (355) 6 2af4_C Phosphate acetyltransfe 99.0 1.8E-08 7.8E-13 69.9 14.1 290 5-336 17-332 (333) 7 1r5j_A Putative phosphotransac 98.8 9.6E-08 4E-12 65.6 13.3 288 3-334 23-334 (337) 8 1u7n_A Fatty acid/phospholipid 98.3 2.9E-05 1.2E-09 50.7 13.0 269 3-335 2-322 (336) 9 1vi1_A Fatty acid/phospholipid 98.2 2.8E-05 1.2E-09 50.8 11.0 271 1-335 1-319 (345) 10 1yco_A Branched-chain phosphot 98.1 0.00045 1.9E-08 43.5 17.2 203 101-335 56-276 (279) 11 2e0c_A 409AA long hypothetical 97.8 3.6E-05 1.5E-09 50.1 6.0 84 245-331 266-357 (409) 12 1hqs_A Isocitrate dehydrogenas 97.6 5.8E-05 2.4E-09 48.9 4.5 79 253-331 286-372 (423) 13 3blx_B Isocitrate dehydrogenas 97.4 0.00024 9.9E-09 45.2 5.3 136 181-331 158-308 (354) 14 1vlc_A 3-isopropylmalate dehyd 97.3 0.00021 8.8E-09 45.6 4.9 136 181-331 169-313 (366) 15 3blx_A Isocitrate dehydrogenas 97.3 0.00035 1.5E-08 44.2 5.6 138 181-331 152-301 (349) 16 1wpw_A 3-isopropylmalate dehyd 97.2 0.00056 2.4E-08 43.0 5.7 137 182-332 140-284 (336) 17 2d1c_A Isocitrate dehydrogenas 97.2 0.00041 1.7E-08 43.8 4.9 138 181-331 160-307 (496) 18 1a05_A IPMDH, IMDH, 3-isopropy 97.2 0.00045 1.9E-08 43.6 5.1 135 182-331 161-305 (358) 19 1x0l_A Homoisocitrate dehydrog 97.1 0.00055 2.3E-08 43.0 5.1 138 181-331 139-286 (333) 20 1v53_A 3-isopropylmalate dehyd 97.1 0.00066 2.8E-08 42.5 5.0 137 182-331 161-306 (366) 21 1cnz_A IPMDH, IMDH, protein (3 97.0 0.00086 3.6E-08 41.9 5.3 137 181-331 165-311 (363) 22 1g2u_A IPMDH, 3-isopropylmalat 96.9 0.00086 3.6E-08 41.9 4.7 137 181-331 155-300 (345) 23 2d4v_A Isocitrate dehydrogenas 96.9 0.0014 5.7E-08 40.7 5.4 78 252-331 294-379 (429) 24 3flk_A Tartrate dehydrogenase/ 96.8 0.00059 2.5E-08 42.8 3.1 141 181-332 161-312 (364) 25 1w0d_A 3-isopropylmalate dehyd 96.8 0.00071 3E-08 42.4 3.3 140 181-331 149-298 (337) 26 2iv0_A Isocitrate dehydrogenas 96.8 0.0017 7.1E-08 40.1 5.1 77 253-331 276-360 (412) 27 1tyo_A Isocitrate dehydrogenas 96.7 0.00086 3.6E-08 41.9 3.3 145 180-329 201-368 (435) 28 3dms_A Isocitrate dehydrogenas 96.7 0.001 4.2E-08 41.5 3.3 67 263-331 304-376 (427) 29 1lwd_A Isocitrate dehydrogenas 95.7 0.0023 9.7E-08 39.3 0.9 146 182-333 183-344 (413) 30 2qfy_A Isocitrate dehydrogenas 95.2 0.0062 2.6E-07 36.7 1.7 69 264-332 279-359 (427) 31 2uxq_A Isocitrate dehydrogenas 94.5 0.02 8.5E-07 33.6 2.9 69 263-332 259-339 (402) 32 1zor_A Isocitrate dehydrogenas 91.8 0.12 5.1E-06 29.0 3.5 78 255-333 249-338 (399) 33 2e0c_A 409AA long hypothetical 87.6 0.29 1.2E-05 26.7 2.7 19 3-23 23-41 (409) 34 1cnz_A IPMDH, IMDH, protein (3 84.6 0.36 1.5E-05 26.1 1.9 22 1-24 1-22 (363) 35 1a05_A IPMDH, IMDH, 3-isopropy 84.5 0.37 1.5E-05 26.1 1.9 20 4-25 1-20 (358) 36 1w0d_A 3-isopropylmalate dehyd 83.4 0.44 1.8E-05 25.6 1.9 122 4-130 1-184 (337) 37 2bon_A Lipid kinase; DAG kinas 76.4 1.6 6.7E-05 22.2 3.0 24 190-213 185-208 (332) 38 2qv7_A Diacylglycerol kinase D 74.7 2.6 0.00011 21.0 3.6 21 103-123 130-150 (337) 39 1s2d_A Purine trans deoxyribos 59.9 2 8.4E-05 21.6 0.6 10 263-272 80-89 (167) 40 2i0f_A 6,7-dimethyl-8-ribityll 59.7 5.3 0.00022 19.1 2.7 124 203-338 8-155 (157) 41 3iyk_A VP5; icosahedral virus; 46.0 15 0.00062 16.4 3.9 75 243-333 362-437 (526) 42 3cg4_A Response regulator rece 44.9 11 0.00048 17.1 2.5 15 183-197 112-126 (142) 43 1ys7_A Transcriptional regulat 38.9 18 0.00075 16.0 2.7 20 112-131 99-118 (233) 44 3dhn_A NAD-dependent epimerase 36.9 13 0.00056 16.7 1.8 27 1-28 1-27 (227) 45 3nhm_A Response regulator; pro 36.5 14 0.00059 16.5 1.9 16 115-130 99-114 (133) 46 1c41_A Lumazine synthase; ribo 36.2 9.4 0.00039 17.6 0.9 151 162-339 13-195 (200) 47 2d13_A Hypothetical protein PH 36.0 21 0.00089 15.5 6.6 90 107-225 83-187 (227) 48 2a4k_A 3-oxoacyl-[acyl carrier 35.6 22 0.00091 15.4 7.7 49 1-54 1-51 (263) 49 1s28_A ORF1; type III chaperon 34.3 23 0.00095 15.3 4.9 66 139-205 66-131 (132) 50 2vrn_A Protease I, DR1199; cys 33.8 23 0.00097 15.3 2.8 45 96-145 94-142 (190) 51 1dpt_A D-dopachrome tautomeras 32.3 24 0.001 15.1 5.2 84 136-223 20-111 (117) 52 2fek_A Low molecular weight pr 32.0 25 0.001 15.1 4.8 54 209-273 51-104 (167) 53 1oc2_A DTDP-glucose 4,6-dehydr 29.9 24 0.001 15.1 2.2 27 1-28 1-27 (348) 54 2bfw_A GLGA glycogen synthase; 29.1 28 0.0012 14.8 4.4 110 206-331 69-180 (200) 55 1zgg_A Putative low molecular 29.0 17 0.00074 16.0 1.4 78 178-275 10-87 (150) 56 3gpi_A NAD-dependent epimerase 27.7 29 0.0012 14.6 2.4 23 1-27 1-24 (286) 57 3ive_A Nucleotidase; structura 26.8 25 0.001 15.1 1.8 23 99-122 171-193 (509) 58 2wja_A Putative acid phosphata 26.4 31 0.0013 14.5 5.1 56 209-275 55-110 (168) 59 3ga8_A HTH-type transcriptiona 25.6 18 0.00075 15.9 0.9 32 211-243 33-65 (78) 60 1nvm_B Acetaldehyde dehydrogen 25.1 27 0.0011 14.8 1.8 38 1-43 1-38 (312) 61 3gg2_A Sugar dehydrogenase, UD 24.8 33 0.0014 14.3 4.6 95 180-286 293-404 (450) 62 2g7o_A Protein TRAM; four heli 24.4 26 0.0011 14.9 1.6 49 190-248 15-63 (70) 63 1wh9_A 40S ribosomal protein S 23.4 35 0.0015 14.2 3.6 74 138-220 12-92 (92) 64 3g79_A NDP-N-acetyl-D-galactos 23.4 35 0.0015 14.2 7.6 99 179-285 324-432 (478) 65 2x0d_A WSAF; GT4 family, trans 23.2 33 0.0014 14.3 1.9 88 244-337 296-385 (413) 66 2qk4_A Trifunctional purine bi 22.2 20 0.00083 15.7 0.6 21 316-336 413-433 (452) 67 1qyd_A Pinoresinol-lariciresin 21.1 39 0.0017 13.9 2.8 27 1-28 1-27 (313) 68 2xcz_A Possible ATLS1-like lig 20.9 40 0.0017 13.9 4.2 78 137-218 22-105 (115) 69 2pln_A HP1043, response regula 20.7 35 0.0015 14.2 1.6 17 103-119 51-67 (137) No 1 >3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Probab=100.00 E-value=0 Score=877.29 Aligned_cols=327 Identities=35% Similarity=0.574 Sum_probs=311.8 Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHC-CCCCCCEEEECC Q ss_conf 8888389971898774789999984285232489899993999999999981899744753861011-126785376103 Q gi|254780397|r 2 DEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAV-SIFKKALPIISS 80 (343) Q Consensus 2 ~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~-~~~~~~i~i~~~ 80 (343) ++++||+||+|||+||||||++|+|++. ..++++++||+++++++++.+++++++..++..++. ....+.++++++ T Consensus 6 ~~~~rIaIT~GDPaGIGpEIilk~~~~~---~~~~~iiigd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~l~v~~~ 82 (334) T 3lxy_A 6 NHNNRLVITPGEPAGVGPDLAITLAQQD---WPVELVVCADPALLLARASQLNLPLQLREYQADQPAIAQQAGSLTILPV 82 (334) T ss_dssp CCCSEEEEECCCTTSSHHHHHHHHTTSC---CSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEEC T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCC---CCCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCEEEECC T ss_conf 6999589975887541799999997167---9998699989999999999759996178847851322146783354001 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 33220013553100000246778877664301234304432234477764101325647899998342358866521123 Q gi|254780397|r 81 PCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343) Q Consensus 81 ~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343) +...++.+|+++.++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+|||||||++++.+ +++||| T Consensus 83 ~~~~~~~~G~~~~~~g~~~~~~l~~A~~~~~~g~~daiVT~PInK~~i~~aG~~f~GHTE~la~~~~~~-----~~~Mml 157 (334) T 3lxy_A 83 KTAVNVVPGKLDVGNSHYVVETLAKACDGAISGEFAALVTGPVQKSIINDAGIPFIGHTEFFADRSHCQ-----RVVMML 157 (334) T ss_dssp CCSSCCCTTCCCGGGHHHHHHHHHHHHHHHHHTSSSCEEECCCCHHHHHHTTCCCSCHHHHHHHHHTCS-----CCEEEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCC-----CCHHHE T ss_conf 235657889757323389999999999885324104899776125667643888587345653002788-----701103 Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 32211266530453133343201024567888989999985313456707999636654453100001210244588864 Q gi|254780397|r 161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343) Q Consensus 161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343) ++++|||+|+|+|||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||+++ T Consensus 158 ~~~~LrV~lvTtHIpLk~V~~~It~~~I~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~Pai~~~ 237 (334) T 3lxy_A 158 ATEELRVALATTHLPLLAVPGAITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTL 237 (334) T ss_dssp EETTEEEEESSCSCCGGGHHHHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEECSSGGGGGGGTTCSHHHHTHHHHHHHH T ss_pred EECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 21672799980675088876424177899999999999998449976648997038986323653057889899999999 Q ss_pred HHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH Q ss_conf 21587643455511210002236676899985120225555414477279992087647558875522213368668389 Q gi|254780397|r 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343) Q Consensus 241 ~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343) |++|++++|||||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++| T Consensus 238 ~~~gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~l~f~~~VnvtlGLp~iRtSpdHGTA~dIagkg~A~~~s 317 (334) T 3lxy_A 238 RQQGINLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELAATGTADVGS 317 (334) T ss_dssp HHTTCCEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGTTTTCSCCHH T ss_pred HHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHH T ss_conf 86499867884807886540015799999776465204342215776679973899568789987166661789899799 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999998520 Q gi|254780397|r 321 LVSALKIAAQLGYQKN 336 (343) Q Consensus 321 ~~~ai~~a~~~~~~~~ 336 (343) |++||++|.+|++||+ T Consensus 318 ~~~Ai~~a~~~~~~r~ 333 (334) T 3lxy_A 318 FITALNLAIKMINNSN 333 (334) T ss_dssp HHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHCC T ss_conf 9999999999997437 No 2 >1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} Probab=100.00 E-value=0 Score=869.48 Aligned_cols=325 Identities=37% Similarity=0.587 Sum_probs=309.2 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHC--CCCCCCEEEE Q ss_conf 98888389971898774789999984285232489899993999999999981899744753861011--1267853761 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAV--SIFKKALPII 78 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~--~~~~~~i~i~ 78 (343) |+ +||+||+|||+||||||++|+|++.+ ..++|+|||+++++++++.++++++++.++..+.. ......++++ T Consensus 1 M~--~kIaIT~GDPaGIGpEIilka~~~~~---~~~~vvig~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~l~v~ 75 (328) T 1yxo_A 1 MS--LRFALTPGEPAGIGPDLCLLLARSAQ---PHPLIAIASRTLLQERAGQLGLAIDLKDVSPAAWPERPAKAGQLYVW 75 (328) T ss_dssp CC--CCEEEECCSTTSSHHHHHHHHTTSCC---SSCEEEEECHHHHHHHHHHHTCCCEEEECBTTBCCSSCCCTTEEEEE T ss_pred CC--CEEEEECCCCCHHHHHHHHHHHHHCC---CCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCEEEEE T ss_conf 99--60999889874468999999997179---99989998999999999984999851366813323302678856785 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 03332200135531000002467788776643012343044322344777641013256478999983423588665211 Q gi|254780397|r 79 SSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM 158 (343) Q Consensus 79 ~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M 158 (343) +.+...++++|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+||||||+++++.+ +++| T Consensus 76 ~~~~~~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~la~~~~~~-----~~~M 150 (328) T 1yxo_A 76 DTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGMITAPVHKGVINEAGIPFSGHTEFLADLTHTA-----QVVM 150 (328) T ss_dssp ECCCSSCCCTTCCCGGGHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCS-----CCEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCEEHHHHHHHCCC-----CHHH T ss_conf 36445677889749899999999999999999719754366078278999867998486659877650465-----3476 Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 23322112665304531333432010245678889899999853134567079996366544531000012102445888 Q gi|254780397|r 159 MLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT 238 (343) Q Consensus 159 ll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~ 238 (343) ||++++|||+|+|+|||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||+ T Consensus 151 ml~~~~L~V~~~T~HipLk~V~~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~ 230 (328) T 1yxo_A 151 MLATRGLRVALATTHLPLREVADAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLE 230 (328) T ss_dssp EEEETTEEEEESSCSCCHHHHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHH T ss_pred HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHHHHH T ss_conf 53125048999860587999998761778999999999999998088787524624799845528886156898999999 Q ss_pred HHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCH Q ss_conf 64215876434555112100022366768999851202255554144772799920876475588755222133686683 Q gi|254780397|r 239 YLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQE 318 (343) Q Consensus 239 ~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~ 318 (343) +++++|++++|||||||+|.+..+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||+ T Consensus 231 ~l~~~gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~~~f~~~VnvtlGLp~irtS~dHGTa~diag~~~A~~ 310 (328) T 1yxo_A 231 RLRGEGLDLIGPLPADTLFTPKHLEHCDAVLAMYHDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDLAGSGRIDS 310 (328) T ss_dssp HHHTTTCEEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGGGTTTCCCCC T ss_pred HHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHCCCCCCCH T ss_conf 99876987789988378887500578758997021012314542156653799648996676799883365507898996 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 89999999999999852 Q gi|254780397|r 319 ESLVSALKIAAQLGYQK 335 (343) Q Consensus 319 ~s~~~ai~~a~~~~~~~ 335 (343) .||++||++|.+|++|| T Consensus 311 ~s~~~Ai~~a~~~~~~r 327 (328) T 1yxo_A 311 GSLQVALETAYQMAASR 327 (328) T ss_dssp HHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999715 No 3 >2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} Probab=100.00 E-value=0 Score=862.01 Aligned_cols=324 Identities=37% Similarity=0.584 Sum_probs=306.2 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHH-HHHCCCCCCEEECCCCHHCCCCCCCEEEEC Q ss_conf 9888838997189877478999998428523248989999399999999-998189974475386101112678537610 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNAR-AKQLNLSVPLYETDCKNAVSIFKKALPIIS 79 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~-~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~ 79 (343) |++ ++|+||+|||+||||||++|+|++..+. .++++++||..++++. ++.++.+++++.++..++....++.+++++ T Consensus 4 M~~-k~IaIT~GDPaGIGpEIilKal~~~~~~-~~~~vvig~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~v~d 81 (330) T 2hi1_A 4 MET-KTVAITMGDPAGIGPEIIVKALSEDGLN-GAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVID 81 (330) T ss_dssp -CC-CCEEEECCCTTTTHHHHHHHHHTSTTTT-TCSEEEEECHHHHHHHHHTTSSCCCEEEEESSGGGCCCCTTEEEEEE T ss_pred CCC-CEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCEEEEEC T ss_conf 899-9189989986273899999999673504-89989997899999999975899950343688666306788157731 Q ss_pred CC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 33--3220013553100000246778877664301234304432234477764101325647899998342358866521 Q gi|254780397|r 80 SP--CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPV 157 (343) Q Consensus 80 ~~--~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~ 157 (343) .+ ...++++|++++++|+++++||+.|+++|++|++|||||+||||++|+.+|++|+||||||+++++.+ +++ T Consensus 82 ~~~~~~~~~~~G~~~~~~g~~a~~~l~~A~~~~~~g~~dalVT~PInK~~i~~aG~~f~GHTE~La~~~~~~-----~~~ 156 (330) T 2hi1_A 82 EPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSR-----DYA 156 (330) T ss_dssp CCCSCGGGCCTTSCCHHHHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCSSHHHHHHHHTTCC-----CCE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHCCCC-----CHH T ss_conf 554556433357530566899999999999997438861798378447789764899786518877640489-----716 Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHH Q ss_conf 12332211266530453133343201024567888989999985313456707999636654453100001210244588 Q gi|254780397|r 158 MMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAI 237 (343) Q Consensus 158 Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI 237 (343) |||++++|||+|+|+|||||+|++.||+++|.+++++++++|++ |++.+||||||||||||||+|+||+||+++|.||| T Consensus 157 Mml~~~~LrV~lvTtHIpLkdV~~~it~~~I~~~i~l~~~~lk~-~~i~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai 235 (330) T 2hi1_A 157 MVLYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAI 235 (330) T ss_dssp EEEECSSCEEEESCCSSCHHHHHHHCCHHHHHHHHHHHHHHHHH-TTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHH T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH T ss_conf 54137986588524787599998645177899999999999764-00569854666328997555655567777688899 Q ss_pred HHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCC Q ss_conf 86421587643455511210002236676899985120225555414477279992087647558875522213368668 Q gi|254780397|r 238 TYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQ 317 (343) Q Consensus 238 ~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~ 317 (343) +++|++|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+|| T Consensus 236 ~~~~~~gi~~~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~f~~~Vn~TlGLp~iRtSpdHGTa~diagk~~a~ 315 (330) T 2hi1_A 236 TDARAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAK 315 (330) T ss_dssp HHHHTTTCEEEEEECHHHHHHHHHTTSCSEEEESSHHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTTTTTTTCCC T ss_pred HHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCC T ss_conf 99997599888998803788874236999999776464116465335787779966999357789987166661689898 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 389999999999999 Q gi|254780397|r 318 EESLVSALKIAAQLG 332 (343) Q Consensus 318 ~~s~~~ai~~a~~~~ 332 (343) ++||++||++|.+|| T Consensus 316 ~~s~~~Ai~~a~~la 330 (330) T 2hi1_A 316 SESMAVSIKLAMQLA 330 (330) T ss_dssp CHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHC T ss_conf 699999999999869 No 4 >1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A Probab=99.05 E-value=9e-09 Score=71.76 Aligned_cols=286 Identities=17% Similarity=0.181 Sum_probs=164.7 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC Q ss_conf 88838997189877478999998428523248989999399999999998189974-47538610111267853761033 Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP 81 (343) Q Consensus 3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~ 81 (343) +.++|++ |.|=-+++ ++|...-.-...+.||++|+++.++..++.++++++ ++.+++.+.... .... ..- T Consensus 21 ~~~rIv~----aeg~d~~v-L~Aa~~~~~~gi~~PILvG~~~~I~~~a~~lgl~l~~~eIIdp~~~~~~-~~~~---~~~ 91 (329) T 1td9_A 21 KDVKIVF----PEGLDERI-LEAVSKLAGNKVLNPIVIGNENEIQAKAKELNLTLGGVKIYDPHTYEGM-EDLV---QAF 91 (329) T ss_dssp SCCEEEE----SCTTCHHH-HHHHHHHHHTTSSEEEEESCHHHHHHHHHTTTBCCTTCEEECTTTCTTH-HHHH---HHH T ss_pred CCCEEEE----ECCCCHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCHHHHH-HHHH---HHH T ss_conf 9998997----08799899-9999999986996899977999999999986998556575172002899-9999---999 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC-CCCCCCCCC Q ss_conf 3220013553100000246778877664301234304432234477764101325647899998342358-866521123 Q gi|254780397|r 82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTG-ITFKPVMML 160 (343) Q Consensus 82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~-~~~~~~Mll 160 (343) ....-..| .....-+...+....|..++..|++|++|+|-++...... +..-+..+...+ .....+|+| T Consensus 92 ~~~rk~~g-~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~~~~~~l---------~~~l~~ig~~~g~~~~s~~~~~ 161 (329) T 1td9_A 92 VERRKGKA-TEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTV---------RPALQIIKTKEGVKKTSGVFIM 161 (329) T ss_dssp HHHTTTSS-CHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCHHHHH---------HHHHHTSCBCTTCCCCEEEEEE T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCHHHH---------HHHHHHCCCCCCCCEEEEEEEE T ss_conf 99863788-0999999988778899998965573221137766709999---------9999631579997257788762 Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 32211266530453133343201024567888989999985313456707999636654453100001210244588864 Q gi|254780397|r 161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343) Q Consensus 161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343) ...+-.+.+.=+++- -.-|.+.+.+-+....+..+ .||++ ||+|++... |.|.--.++.....-|.+.. T Consensus 162 ~~~~~~l~~tD~~vn-----i~P~~eqla~Ia~~aa~~a~-~lgie-PkVAlLs~s----~~~~~~~~s~~~~~~a~~~~ 230 (329) T 1td9_A 162 ARGEEQYVFADCAIN-----IAPDSQDLAEIAIESANTAK-MFDIE-PRVAMLSFS----TKGSAKSDETEKVADAVKIA 230 (329) T ss_dssp EETTEEEEEECSSSC-----SSCCHHHHHHHHHHHHHHHH-TTTCC-CCEEEECSS----STTSSCSHHHHHHHHHHHHH T ss_pred CCCCCCEEEECCCCC-----CCCCHHHHHHHHHHHHHHHH-HHCCC-CCCCCEECC----CCCCCCCHHHHHHHHHHHHH T ss_conf 268764799789887-----49799999999999999999-71669-955000024----56798870277899999998 Q ss_pred HHC--CCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHH-CCCCEEE---EEEE--CCEEEECC Q ss_conf 215--8764345551121000223----------667689998512022555541-4477279---9920--87647558 Q gi|254780397|r 241 RND--NKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTL-DFNQTVN---ITLG--LPFVRTSP 302 (343) Q Consensus 241 ~~~--g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l-~f~~~Vn---~t~G--Lp~irtSp 302 (343) +++ +..++||+..|.++.+... ++-|+.|.--=|-|-|-.|++ .|..+.. +-.| -|++-+|. T Consensus 231 ~~~~~~~~vdGpl~~D~Al~~~~a~~k~~~s~vaG~AnvLi~P~l~agNi~yK~l~~~~~~~~~GpIl~G~~~PV~~~sR 310 (329) T 1td9_A 231 KEKAPELTLDGEFQFDAAFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIAQRLGNFEAVGPILQGLNMPVNDLSR 310 (329) T ss_dssp HHHCTTSCEEEEECHHHHHCHHHHHHHCTTSSCSSCCSEEECSSHHHHHHHHHHHHHTTTCEEEEEEEESBSSCEEECCT T ss_pred HCCCCCCEECCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEECHHHHCCCCCEEECCC T ss_conf 65188866616653876539877753089986689799899588178789999999835983874376677998797899 Q ss_pred CCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 8755222133686683899999999999 Q gi|254780397|r 303 DHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 303 dHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) . ++.+..++++-+|+- T Consensus 311 ~------------~s~~~i~~~~ala~~ 326 (329) T 1td9_A 311 G------------CNAEDVYNLALITAA 326 (329) T ss_dssp T------------CCHHHHHHHHHHHHH T ss_pred C------------CCHHHHHHHHHHHHH T ss_conf 9------------999999999999999 No 5 >1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} SCOP: c.77.1.5 Probab=99.04 E-value=4.7e-09 Score=73.45 Aligned_cols=287 Identities=13% Similarity=0.089 Sum_probs=169.1 Q ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCCCC Q ss_conf 838997189877478999998428523248989999399999999998189974-4753861011126785376103332 Q gi|254780397|r 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSPCG 83 (343) Q Consensus 5 ~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343) ++|++.-|+ -+.+ ++|...-.-...+.||++|++..++..++.++++++ +..+++.+...........+ . T Consensus 27 krIvf~Ege----d~rv-L~Aa~~~~~egia~PILVG~~~~I~~~~~~~gl~l~~ieIIdp~~~~~~~e~~~~~~----~ 97 (355) T 1vmi_A 27 ARVVFPDAL----DQRV-LKAAQYLHQQGLATPILVANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRW----L 97 (355) T ss_dssp CEEEESCCS----SHHH-HHHHHHHHHTTSCEEEEESCHHHHHHHHHHHTCCCTTCEEECTTSCHHHHHHHHHHH----H T ss_pred CEEEECCCC----CHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHH----H T ss_conf 989971889----9899-999999998799579998689999999997799977778977878989999999999----9 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC-CCCC-CCCC Q ss_conf 2001355310000024677887766430123430443223447776410132564789999834235886-6521-1233 Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGIT-FKPV-MMLS 161 (343) Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~-~~~~-Mll~ 161 (343) .-.-+.....+-+...+....|+.++..|++|++|+|-++.... +...+-+..+...+.. ...+ ||+. T Consensus 98 -~r~~~~~~~~a~~~~~d~~~~Aa~mV~~G~AD~lv~G~~~tt~~---------~l~~~~~iiG~~~g~~~~s~~~~m~~ 167 (355) T 1vmi_A 98 -ARAGEKTPPDALEKLTDPLMFAAAMVSAGKADVCIAGNLSSTAN---------VLRAGLRIIGLQPGCKTLSSIFLMLP 167 (355) T ss_dssp -HHHGGGCCTTHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCHHH---------HHHHHHHHTCBCTTCCCCEEEEEEEE T ss_pred -HHHCCCCHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCHHH---------HHHHHHHHHCCCCCCEEEEEEEEEEC T ss_conf -98479979999999737177767745367666472377646899---------99999865135764201212456520 Q ss_pred -CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH Q ss_conf -2211266530453133343201--0245678889899999853134567079996366544531000012102445888 Q gi|254780397|r 162 -GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT 238 (343) Q Consensus 162 -~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~ 238 (343) .++-.+.+ .|..-.+ |.+.+.+-+....+..++.+| ..||+|++... |.|.--.+......-|.+ T Consensus 168 ~~~~~~l~~-------aD~~vn~~P~~eqla~Ia~~aa~~a~~l~g-~~PkVAlLS~S----~~gs~~~~s~~~~~~a~~ 235 (355) T 1vmi_A 168 QYSGPALGF-------ADCSVVPQPTAAQLADIALASAETWRAITG-EEPRVAMLSFS----SNGSARHPCVANVQQATE 235 (355) T ss_dssp SSSCCCEEE-------ESSSSCSSCCHHHHHHHHHHHHHHHHHHHS-SCCEEEEECSC----STTSSCSHHHHHHHHHHH T ss_pred CCCCCEEEE-------ECCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCC----CCCCCCCHHHHHHHHHHH T ss_conf 468736998-------367666689899999999999999999669-99985521213----577988644899999999 Q ss_pred HHHHC--CCCCCCCCCCHHHEECCC----------CCCCCEEEEEECCHHHHHHHHHC-CCCEEE---EEEE--CCEEEE Q ss_conf 64215--876434555112100022----------36676899985120225555414-477279---9920--876475 Q gi|254780397|r 239 YLRND--NKNIIGPLPADSMFHHSA----------RQCYDVAICMYHDQALIPIKTLD-FNQTVN---ITLG--LPFVRT 300 (343) Q Consensus 239 ~~~~~--g~~v~GP~paDt~F~~~~----------~~~~D~vlamYHDQglip~K~l~-f~~~Vn---~t~G--Lp~irt 300 (343) .++++ ++.|+||+..|.++.+.. .++-|+.|.=-=|-|-|..|++- +..+.. +-+| -|+.-+ T Consensus 236 ~~~~~~~~~~vdGemq~D~Al~~~~~~~k~~~s~l~G~AnvLIfPnl~agNi~yK~l~~~~~~~~iGpiL~G~~~Pv~~~ 315 (355) T 1vmi_A 236 IVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPMHDL 315 (355) T ss_dssp HHHHHCTTSEEEEEECHHHHHCHHHHHHHCTTCTTTTCCSEEECSSHHHHHHHHHHHHHHHCEEEEEEEEESBSSCEEEC T ss_pred HHHHHCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCEEEC T ss_conf 99722899721477631224279888612888977887868996887888999999998449838707775779988989 Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 5887552221336866838999999999999985 Q gi|254780397|r 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQ 334 (343) Q Consensus 301 SpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~ 334 (343) |.. ++.+..++.+-+|.--++. T Consensus 316 sr~------------~sv~~i~n~~aiaa~~aq~ 337 (355) T 1vmi_A 316 SRG------------CSVQEIIELALVAAVPRQT 337 (355) T ss_dssp CTT------------CCHHHHHHHHHHHHCCC-- T ss_pred CCC------------CCHHHHHHHHHHHHHHHHH T ss_conf 999------------9999999999999999999 No 6 >2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C* Probab=98.99 E-value=1.8e-08 Score=69.90 Aligned_cols=290 Identities=16% Similarity=0.116 Sum_probs=169.7 Q ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCCC Q ss_conf 83899718987747899999842852324898999939999999999818997447538610111267853761033322 Q gi|254780397|r 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCGA 84 (343) Q Consensus 5 ~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~~ 84 (343) ++|++.-|+ -+. +++|.....-...+.||++|+++.++..++.++++ .+..+++.+.... .... +.-... T Consensus 17 krIv~~ege----D~r-vL~Aa~~~~~~gi~~pILvG~~~~I~~~a~~l~l~-~~eiIdp~~~e~~-~~~~---~~~~~~ 86 (333) T 2af4_C 17 KTIALPETE----DIR-TLQAAAKILERGIADIVLVGNEADIKALAGDLDLS-KAKIVDPKTYEKK-DEYI---NAFYEL 86 (333) T ss_dssp CEEEECCTT----SHH-HHHHHHHHHHHTSCEEEEESCHHHHHHHHSSCCCT-TSEEECTTSCTTH-HHHH---HHHHHH T ss_pred CEEEECCCC----CHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC-CCEEECCCCCHHH-HHHH---HHHHHH T ss_conf 989982879----989-99999999986993799987999999999858998-6778788652668-9999---999999 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCC Q ss_conf 00135531000002467788776643012343044322344777641013256478999983423588-66521123322 Q gi|254780397|r 85 KIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGI-TFKPVMMLSGP 163 (343) Q Consensus 85 ~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~-~~~~~Mll~~~ 163 (343) .-.-|.....+.+...+....|+.+++.|++|++|+|-++...... ...-+.-+...+. ....+++|.-. T Consensus 87 r~~kG~~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~~~~~~l---------~~~~~~ig~~~g~~~~s~~~i~~~p 157 (333) T 2af4_C 87 RKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTL---------RPAVQIVKTAKGAALASAFFIISVP 157 (333) T ss_dssp HGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCSHHHH---------HHHHHHTCBSTTCSCCEEEEEEECT T ss_pred HCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCHHHH---------HHHHHHHHCCCCCEEEEEEEEEECC T ss_conf 5447999999998831779999999974876636227888829999---------9999996403774022258999603 Q ss_pred CC-----EEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH Q ss_conf 11-----266530453133343201--02456788898999998531345670799963665445310000121024458 Q gi|254780397|r 164 QL-----RTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA 236 (343) Q Consensus 164 ~L-----~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa 236 (343) .. ++.++| |..=.+ |.+.+.+-+....+..+ .||+..||+|++... |.|.--.+..+...-| T Consensus 158 ~~~~~~~~~l~~t------D~~vn~~P~~eqla~Ia~~aa~~~~-~lg~~~PkVAlLS~s----~~~s~~~~s~~~~~~a 226 (333) T 2af4_C 158 DCEYGSDGTFLFA------DSGMVEMPSVEDVANIAVISAKTFE-LLVQDVPKVAMLSYS----TKGSAKSKLTEATIAS 226 (333) T ss_dssp TCCSTBTTEEEEE------TSSSCSSCCHHHHHHHHHHHHHHHH-HHHCSCCEEEEECSC----STTSCCSHHHHHHHHH T ss_pred CCCCCCCCEEEEC------CCCCEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEEC----CCCCCCCCHHHHHHHH T ss_conf 3335778648960------7755459099999999999999999-855633305677503----5789998038999999 Q ss_pred HHHHHHC--CCCCCCCCCCHHHEECCC----------CCCCCEEEEEECCHHHHHHHHHCCCC-EEE---EEEE--CCEE Q ss_conf 8864215--876434555112100022----------36676899985120225555414477-279---9920--8764 Q gi|254780397|r 237 ITYLRND--NKNIIGPLPADSMFHHSA----------RQCYDVAICMYHDQALIPIKTLDFNQ-TVN---ITLG--LPFV 298 (343) Q Consensus 237 I~~~~~~--g~~v~GP~paDt~F~~~~----------~~~~D~vlamYHDQglip~K~l~f~~-~Vn---~t~G--Lp~i 298 (343) .+.+++. +..|+||+..|.++.+.. .++-|+.|---=|-|-|-.|++-+.. +.. +-.| -|+. T Consensus 227 ~~~~~~~~~~~~vdGplq~D~Al~~e~a~~K~~~s~v~G~AnvLifP~l~agNi~yK~l~~~~~~~~~Gpil~G~~~Pv~ 306 (333) T 2af4_C 227 TKLAQELAPDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPITQGLAKPIN 306 (333) T ss_dssp HHHHHHHCTTSEEEEEECHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHHHTSCCEEEEEEEESBSSCEE T ss_pred HHHHHHHCCCEEEECCCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCEE T ss_conf 99986137890571563076650978898548998678989989938807878999999985397797506446899878 Q ss_pred EECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 75588755222133686683899999999999998520 Q gi|254780397|r 299 RTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 (343) Q Consensus 299 rtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~ 336 (343) -+|. -++.+..++++-+|+-.|..++ T Consensus 307 ~~SR------------~~s~~~i~~~~ala~~~A~~~~ 332 (333) T 2af4_C 307 DLSR------------GCSDEDIVGAVAITCVQAAAQD 332 (333) T ss_dssp ECCT------------TCCHHHHHHHHHHHHHHHHHHH T ss_pred ECCC------------CCCHHHHHHHHHHHHHHHHHHC T ss_conf 7999------------9999999999999999998501 No 7 >1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5 Probab=98.85 E-value=9.6e-08 Score=65.61 Aligned_cols=288 Identities=14% Similarity=0.133 Sum_probs=160.9 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC Q ss_conf 88838997189877478999998428523248989999399999999998189974-47538610111267853761033 Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP 81 (343) Q Consensus 3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~ 81 (343) +.++|++.-|+ -+.+ ++|...-.-...+.||++|+++.++..++.++++.. +..+++.+......-.-.+. T Consensus 23 ~~krIvfaeg~----d~rv-L~Aa~~~~~~gi~~PILvG~~~~I~~~~~~~gl~~~~~eIId~~~~~~~~~~~~~~~--- 94 (337) T 1r5j_A 23 KNMKIVFPEGN----DERV-VRAAARLKFEGLLEPIILGQSEEVRNLLTKLGFADQDYTIINPNEYADFDKMKEAFV--- 94 (337) T ss_dssp SCCEEEESCSS----CHHH-HHHHHHHHTTTSCEEEEBSCHHHHHHHHHHTTCCCSSCCCBCSSSCTTHHHHHHHHH--- T ss_pred CCCEEEEECCC----CHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH--- T ss_conf 89989980879----9899-999999998699689997799999999997798966755778897688999999999--- Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCCHHHHHHHHHCCCCCC-CCCC-- Q ss_conf 322001355-31000002467788776643012343044322344777-641013256478999983423588-6652-- Q gi|254780397|r 82 CGAKIVTGT-PNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLL-YQEKFKFPGHTEFLAELAKKNTGI-TFKP-- 156 (343) Q Consensus 82 ~~~~~~~G~-~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l-~~aG~~f~GhTE~La~~~~~~~~~-~~~~-- 156 (343) +..-++ ....+.+..-+....|+.+...|++|++|+|-++..+- ...-. +.-+...+. .... T Consensus 95 ---~~r~~~~~~~~a~~~~~d~~~~a~~mv~~G~aD~lv~G~~~~t~~~l~~~l----------~~i~~~~~~~~~s~~~ 161 (337) T 1r5j_A 95 ---EVRKGKATLEDADKMLRDVNYFGVMLVKMGLADGMVSGAIHSTADTVRPAL----------QIIKTKPGISRTSGVF 161 (337) T ss_dssp ---HHHTTTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCSHHHHHHHH----------HSSCBCTTCSSCEEEE T ss_pred ---HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH----------HHHCCCCCCCCCCEEE T ss_conf ---997268869999998664689999999679986565155557388887789----------8725788874332268 Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH Q ss_conf 11233221126653045313334320102456788898999998531345670799963665445310000121024458 Q gi|254780397|r 157 VMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA 236 (343) Q Consensus 157 ~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa 236 (343) +|.+-..+ ++..+| -.. |.-.-|.+.+.+-+....+.. +.||+. ||+|++.. .|.|.--.+..+...-| T Consensus 162 ~~~~~~~~-~~l~~t-D~a---vn~~P~~eqla~Ia~~aa~~~-r~~g~e-PkVA~LS~----s~~~s~~~~s~~~~~~a 230 (337) T 1r5j_A 162 LMNRENTS-ERYVFA-DCA---INIDPTAQELAEIAVNTAETA-KIFDID-PKIAMLSF----STKGSGKAPQVDKVREA 230 (337) T ss_dssp EEEEGGGT-EEEEES-CSS---SCSSCCHHHHHHHHHHHHHHH-HHTTCC-CCEEEECS----CSTTSSCSHHHHHHHHH T ss_pred EEEECCCC-CEEEEE-CCE---EECCCCHHHHHHHHHHHHHHH-HHCCCC-CCEEEEEC----CCCCCCCCHHHHHHHHH T ss_conf 88503456-527972-151---221839999999999999999-973999-87001102----33579885569999999 Q ss_pred HHHHHH--CCCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHHCCCCE---E-EEEEEC--CEE Q ss_conf 886421--58764345551121000223----------66768999851202255554144772---7-999208--764 Q gi|254780397|r 237 ITYLRN--DNKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTLDFNQT---V-NITLGL--PFV 298 (343) Q Consensus 237 I~~~~~--~g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~f~~~---V-n~t~GL--p~i 298 (343) .+.+++ .+..++||+..|.++.+... ++-|+.+.-.=|-|-|-.|++-+..+ + .+-.|+ |+. T Consensus 231 ~~~~~~~~~~~~vdGpl~~D~Al~~~~a~~K~~~s~vaG~AnvLIfP~l~agNi~yK~l~~~~~~~~~Gpil~G~~~Pv~ 310 (337) T 1r5j_A 231 TEIATGLNPDLALDGELQFDAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQRLGMFDAIGPILQGLNKPVN 310 (337) T ss_dssp HHHHHHHCTTSCEEEEECHHHHHCHHHHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHHHHTTCCEEEEEEEESBSSCEE T ss_pred HHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEECHHHHCCCCCEE T ss_conf 99998468996347874155552999999748998778989989918827879999999983498088316557899879 Q ss_pred EECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 755887552221336866838999999999999985 Q gi|254780397|r 299 RTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQ 334 (343) Q Consensus 299 rtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~ 334 (343) -+|.. ++.+..++.+-+|+--|.. T Consensus 311 ~~SR~------------~s~~~i~~~~alaa~~A~~ 334 (337) T 1r5j_A 311 DLSRG------------SSAEDIYKLAIITAAQAIE 334 (337) T ss_dssp ECCTT------------CCHHHHHHHHHHHHHHHHT T ss_pred ECCCC------------CCHHHHHHHHHHHHHHHHH T ss_conf 79999------------9999999999999999998 No 8 >1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4 Probab=98.27 E-value=2.9e-05 Score=50.71 Aligned_cols=269 Identities=16% Similarity=0.186 Sum_probs=150.6 Q ss_pred CCCCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECC Q ss_conf 8883899-71898774789999984285-232489899993999999999981899744753861011126785376103 Q gi|254780397|r 3 EFLPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISS 80 (343) Q Consensus 3 k~~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~ 80 (343) +.++|+| .|| .-=||+.+++....- +......++++|+...++.. +.. ...+.+++. T Consensus 2 ~~ikIavDaMG--GD~~P~~~v~Ga~~al~~~~d~~i~LvG~e~~i~~~---l~~----------------~~~i~iv~a 60 (336) T 1u7n_A 2 NAMKIAVDAMG--GDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKY---ITD----------------EKNITIIHT 60 (336) T ss_dssp --CEEEEESSC--STTTTHHHHHHHHHHHHHCTTCEEEEEECHHHHHTT---CSC----------------CTTEEEEEC T ss_pred CCEEEEEECCC--CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH---HCC----------------CCCEEEEEC T ss_conf 96299997059--866808899999999987889879999699999987---521----------------688289958 Q ss_pred CCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 3322001355310000--02467788776643012343044322344777641013256478999983423588665211 Q gi|254780397|r 81 PCGAKIVTGTPNPQTA--SSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM 158 (343) Q Consensus 81 ~~~~~~~~G~~s~~~g--~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M 158 (343) +.. +.... ++..+ +--=.|+..|++++++|++||+|++=-+-..+-.+-+ . |..+- +...-.+| T Consensus 61 ~~~--I~m~d-~p~~alr~kk~SSm~~a~~lvk~g~ada~VSaGnTGA~~a~~~~-~------lg~i~----gi~RPal~ 126 (336) T 1u7n_A 61 DEK--IASDD-EPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLF-I------VGRIK----NVERPGLM 126 (336) T ss_dssp SCC--CCTTC-CHHHHHHHCTTSHHHHHHHHHHHTSCSEEEESSCHHHHHHHHHH-T------TCBCT----TCSSCEEE T ss_pred CCC--CCCCC-CHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH-H------HCCCC----CCCCCCCC T ss_conf 975--45898-67899872567559999999866577779925860889999898-7------61455----66666430 Q ss_pred CCC----CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHH Q ss_conf 233----2211266530453133343201--0245678889899999853134567079996366544531000012102 Q gi|254780397|r 159 MLS----GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNI 232 (343) Q Consensus 159 ll~----~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~i 232 (343) -.+ +.+-.++ |-||=..+ +.+.+.+...+=.-..+..+|+++||++++- -|+.-.-|+|. T Consensus 127 ~~~Pt~~~~~~~~~-------lLD~GAN~d~~~~~L~qFA~mG~~ya~~~~~i~~PrVgLLN----iG~E~~KG~~~--- 192 (336) T 1u7n_A 127 STLPVMGEPDKGFD-------MLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLN----NGTEETKGSEL--- 192 (336) T ss_dssp EEEECTTCTTCEEE-------EECSSSCSCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEC----SCC----CCHH--- T ss_pred EECCCCCCCCCCEE-------EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH--- T ss_conf 33565678878369-------99888789889999999999999999974799898699971----57424557599--- Q ss_pred HHHHHHHHHH-CCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHC--------------CCCEE-------- Q ss_conf 4458886421-587643455511210002236676899985120225555414--------------47727-------- Q gi|254780397|r 233 IIPAITYLRN-DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLD--------------FNQTV-------- 289 (343) Q Consensus 233 I~PaI~~~~~-~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~--------------f~~~V-------- 289 (343) +.-|-+.+++ ..++..|..=++.+|. ++.|+|||==. -|-+.+|+.. |.++. T Consensus 193 ~~~a~~lL~~~~~~nf~G~vEg~di~~----G~~DVvV~DGF-tGNi~LKt~EG~~~~i~~~lk~~~~~~~~~~k~g~ll 267 (336) T 1u7n_A 193 TKKAFELLAADETINFVGNVEARELLN----GVADVVVTDGF-TGNAVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALL 267 (336) T ss_dssp HHHHHHHHHHCTTSCEEEEECGGGGGG----CSCSEEECCHH-HHHHHHHHHHHHHHHHHHHHHHHHTC-------CHHH T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCC----CCCEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 999999974057865210056353568----98549996881-3799998766689999999998750023899999999 Q ss_pred -------------------EEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf -------------------9992087647558875522213368668389999999999999852 Q gi|254780397|r 290 -------------------NITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK 335 (343) Q Consensus 290 -------------------n~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~ 335 (343) .+-|||.=+. |.+-|.++...+.+||++|.++.++. T Consensus 268 ~~~~l~~~k~~~D~~~~gGA~lLGv~g~v----------ik~HG~S~~~ai~nAI~~a~~~~~~~ 322 (336) T 1u7n_A 268 LKNALHGMKDEMDYSKHGGAVLFGLKAPV----------IKTHGATGPDAVRYTIRQIHTMLETQ 322 (336) T ss_dssp HHHHHHHHHHHTCGGGGCCEEEETBSSCE----------EECCTTCCHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCEE----------EECCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 99999999976791013987897378108----------97589999899999999999999968 No 9 >1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 Probab=98.16 E-value=2.8e-05 Score=50.80 Aligned_cols=271 Identities=14% Similarity=0.159 Sum_probs=155.1 Q ss_pred CCCCCCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEE Q ss_conf 988883899-71898774789999984285-2324898999939999999999818997447538610111267853761 Q gi|254780397|r 1 MDEFLPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPII 78 (343) Q Consensus 1 M~k~~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~ 78 (343) |+ .+|+| .|| .--||+.+++..... +-.....++++|+.+.++...+.. ++.+.++ T Consensus 1 Ms--irIAvDaMG--GD~~P~~vv~Ga~~al~~~~~~~i~LvG~e~~i~~~l~~~------------------~~ri~iv 58 (345) T 1vi1_A 1 MS--LRIAVDAMG--GDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTT------------------SDRITVL 58 (345) T ss_dssp -C--EEEEEESSC--SSSTTHHHHHHHHHHHHHCTTEEEEEEECHHHHHTTCCSC------------------CTTEEEE T ss_pred CC--EEEEEEECC--CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHC------------------CCCEEEE T ss_conf 95--299998059--8668088999999999978897699992899999998536------------------2663899 Q ss_pred CCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 033322001355-3100000246778877664301234304432234477764101325647899998342358866521 Q gi|254780397|r 79 SSPCGAKIVTGT-PNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPV 157 (343) Q Consensus 79 ~~~~~~~~~~G~-~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~ 157 (343) +.+.. +.... |...=-+---.|+..|++++++|++||+|.+=-.-..+-.+-+. | +.-.+...-.+ T Consensus 59 ~a~~v--I~m~d~p~~alr~kk~SSm~~a~~lvk~g~ada~VSaGnTGAl~a~a~~~-------l----~~i~gi~RPai 125 (345) T 1vi1_A 59 HADEV--IEPTDEPVRAVRRKKNSSMVLMAQEVAENRADACISAGNTGALMTAGLFI-------V----GRIKGIDRPAL 125 (345) T ss_dssp ECCBC--CCTTSCHHHHHHHCTTBHHHHHHHHHHTTSCSEEEECSCHHHHHHHHHHT-------T----CBCTTCSSCEE T ss_pred ECCCC--CCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH-------H----HHHCCCCCCCE T ss_conf 28874--05898768998845565599999983032467798446438999999987-------7----51047555531 Q ss_pred CCCC-CCC-CEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHH Q ss_conf 1233-221-1266530453133343201--02456788898999998531345670799963665445310000121024 Q gi|254780397|r 158 MMLS-GPQ-LRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNII 233 (343) Q Consensus 158 Mll~-~~~-L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI 233 (343) |-.+ +.+ -.++ |-||=.++ +.+.+.+...+-.-..+..+|+++||++++-. |+.-.-|+|. + T Consensus 126 a~~~Pt~~g~~~~-------llD~GAN~d~~p~~L~qFA~mGs~yak~~~g~~~PrVgLLNi----G~E~~KG~~~---~ 191 (345) T 1vi1_A 126 APTLPTVSGDGFL-------LLDVGANVDAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLNV----GTEDKKGNEL---T 191 (345) T ss_dssp ECEECCSSSCCEE-------EECSSSCSSCCHHHHHHHHHHHHHHHHHTSCCSSCEEEEEES----SSSTTCSCHH---H T ss_pred EEECCCCCCCCCE-------EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC----CCCCCCCCHH---H T ss_conf 2554566898617-------973785667798999999999999999955999994777635----6656676699---9 Q ss_pred HHHHHHHHH-CCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC--------------------------- Q ss_conf 458886421-5876434555112100022366768999851202255554144--------------------------- Q gi|254780397|r 234 IPAITYLRN-DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDF--------------------------- 285 (343) Q Consensus 234 ~PaI~~~~~-~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f--------------------------- 285 (343) .-|-+.+++ ..++..|-.=++-+|. ++.|+|||== =-|-+.+|++.- T Consensus 192 kea~~lL~~~~~~nf~GnvEg~di~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~i~~~lk~~~~~~~~~k~~~ll~~ 266 (345) T 1vi1_A 192 KQTFQILKETANINFIGNVEARDLLD----DVADVVVTDG-FTGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLK 266 (345) T ss_dssp HHHHHHHHSCTTSEEEEEEEGGGGGG----TSCSEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCH T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC----CCCEEEEECC-CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999887518961587557665678----9940999788-235999985520678999999999865488888999879 Q ss_pred -------------CCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf -------------77279992087647558875522213368668389999999999999852 Q gi|254780397|r 286 -------------NQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK 335 (343) Q Consensus 286 -------------~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~ 335 (343) ..|=..-|||.=+. |.+-|.+|..++.+||++|.++++++ T Consensus 267 ~~l~~l~~~~D~~~~gGA~lLGl~giv----------ik~HGsS~~~ai~nAI~~A~~~~~~~ 319 (345) T 1vi1_A 267 PKLKEMKMKMEYSNYGGASLFGLKAPV----------IKAHGSSDSNAVFRAIRQAREMVSQN 319 (345) T ss_dssp HHHHHHHHHHCGGGSCCEEEETBSSCE----------EECCTTCCHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCEE----------EEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999975791207998897378108----------99389999899999999999999966 No 10 >1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} Probab=98.14 E-value=0.00045 Score=43.54 Aligned_cols=203 Identities=21% Similarity=0.227 Sum_probs=116.8 Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 77887766430123430443223447776410132564789999834235886652112332211266530453133343 Q gi|254780397|r 101 ANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC 180 (343) Q Consensus 101 ~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~ 180 (343) ++...|+.++++|++|++|.|=++..++..+.....+ +...+.....+++|...+=++.++ .|+. T Consensus 56 ~~~~~a~~lv~~G~aD~lv~G~~~t~~~~~~~l~~i~---------~~~~~~~~~~~~~~~~~~~~~~~l------~D~g 120 (279) T 1yco_A 56 AVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEH---------QLKNKPILSHVAMVELPAGKTFLL------TDCA 120 (279) T ss_dssp HHHHHHHHHHHSTTCSEEEECSSCHHHHHHHHTCTTT---------CCBCSSSCEEEEEEECSSSCEEEE------ECSS T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHC---------CCCCCCEEEEEEEEEECCCCEEEE------EEEE T ss_conf 9999999999769988899898883999999998726---------889986689999998049957999------7227 Q ss_pred HH--CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCHHHE Q ss_conf 20--102456788898999998531345670799963665445310000121024458886421-587643455511210 Q gi|254780397|r 181 RI--LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN-DNKNIIGPLPADSMF 257 (343) Q Consensus 181 ~~--it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~-~g~~v~GP~paDt~F 257 (343) -. -+.+.+.+-........+ .||+..|+++++.-+ +.+.-+.+..+.-.-+.+..+. ....+.||...|.+. T Consensus 121 ~N~~p~~e~L~~~a~~~~~~ak-~~g~~~~~v~ll~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ 195 (279) T 1yco_A 121 MNIAPTQATLIEIVENAKEVAQ-KLGLHHPKIALLSAA----ENFNPKMPSSVLAKEVTAHFNDQQEATVFGPLSLDLAT 195 (279) T ss_dssp SCSSCCHHHHHHHHHHHHHHHH-HTTCSSCEEEEECSC----SSCCTTCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHH T ss_pred EECCCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECC----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 8727679999999999999999-828999955888513----57789970799999999986543543235631112211 Q ss_pred E----------CCCCCCCCEEEEEECCHHHHHHHHHCCCCEEE---EEEEC--CEEEECCCCCCCHHHCCCCCCCHHHHH Q ss_conf 0----------02236676899985120225555414477279---99208--764755887552221336866838999 Q gi|254780397|r 258 H----------HSARQCYDVAICMYHDQALIPIKTLDFNQTVN---ITLGL--PFVRTSPDHGTAFDIAGSSLTQEESLV 322 (343) Q Consensus 258 ~----------~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn---~t~GL--p~irtSpdHGTafdiagk~~a~~~s~~ 322 (343) . ....+..|..+.--=+-|-+-+|++-+-.+.. +-+|+ |++-+| +-++.+... T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~p~l~a~ni~~K~l~~l~~~~~Gg~llG~~~pVi~~s------------rs~s~~~i~ 263 (279) T 1yco_A 196 SEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVGGTIVGTKVPVVLTS------------RSDSTESKF 263 (279) T ss_dssp CHHHHHHTTCCSSCSSCCSEEECSSHHHHHHHHHHHHHHSCCEEEEEEESBSSCEEECC------------TTSCHHHHH T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECC------------CCCCHHHHH T ss_conf 58888630689645423456655568877899999997189844210015898579899------------999999999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999852 Q gi|254780397|r 323 SALKIAAQLGYQK 335 (343) Q Consensus 323 ~ai~~a~~~~~~~ 335 (343) +++.+|+.+.+.. T Consensus 264 n~i~lA~~~v~~~ 276 (279) T 1yco_A 264 HSLRFAMRQVHHH 276 (279) T ss_dssp HHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHH T ss_conf 9999999997642 No 11 >2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Probab=97.79 E-value=3.6e-05 Score=50.14 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=57.3 Q ss_pred CCCCCCCCCHHHEECC--CCCCCCEEEEE-EC-----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCC Q ss_conf 7643455511210002--23667689998-51-----2022555541447727999208764755887552221336866 Q gi|254780397|r 245 KNIIGPLPADSMFHHS--ARQCYDVAICM-YH-----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLT 316 (343) Q Consensus 245 ~~v~GP~paDt~F~~~--~~~~~D~vlam-YH-----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a 316 (343) +.++- .-.|++-..- .-.+||++|+. ++ |++-.-.=.+++--+.|+ |-..--.-|-||||.||||||+| T Consensus 266 I~~~~-~~vD~~~~~Lv~~P~~fDViv~~NlfGDIlSDlaa~l~GslGl~pSani--g~~~a~fEp~HGSApdiaGk~iA 342 (409) T 2e0c_A 266 IILND-RIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANI--GDEGGMFEAIHGTAPKYAGKNVA 342 (409) T ss_dssp EEEEE-EEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEE--ETTEEEEEESSCCCGGGTTTTCS T ss_pred EEEEH-HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCEEEECCCCCHHHHCCCCCC T ss_conf 89838-8799999998329766734432011117888899886088763542214--79863875898862564799876 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 838999999999999 Q gi|254780397|r 317 QEESLVSALKIAAQL 331 (343) Q Consensus 317 ~~~s~~~ai~~a~~~ 331 (343) ||.+|+-|.-+-++- T Consensus 343 NP~a~IlS~ammL~~ 357 (409) T 2e0c_A 343 NPTGIIKAGELMLRW 357 (409) T ss_dssp CTHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 909999999999998 No 12 >1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Probab=97.59 E-value=5.8e-05 Score=48.89 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=54.4 Q ss_pred CHHHEEC--CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHH Q ss_conf 1121000--22366768999--8512----02255554144772799920876475588755222133686683899999 Q gi|254780397|r 253 ADSMFHH--SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSA 324 (343) Q Consensus 253 aDt~F~~--~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~a 324 (343) .|.+-.+ ..-.+||++|+ ||=| ++-.-.=.++.--+.|+--+-.+----|-||||.||||||+|||.+++-| T Consensus 286 vD~~~~~lv~~P~~FDVivt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~a~fEp~HGSAPdiAGk~iANP~a~IlS 365 (423) T 1hqs_A 286 ADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLDKVNPSSVILS 365 (423) T ss_dssp HHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTCCEEEEESCCCCGGGTTTTCSCCHHHHHH T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCHHHHHHH T ss_conf 99999998649422777501321105787899987089888753016999984798679886266569986597999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780397|r 325 LKIAAQL 331 (343) Q Consensus 325 i~~a~~~ 331 (343) .-+-++. T Consensus 366 ~amML~~ 372 (423) T 1hqs_A 366 GVLLLEH 372 (423) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999998 No 13 >3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Probab=97.37 E-value=0.00024 Score=45.25 Aligned_cols=136 Identities=16% Similarity=0.295 Sum_probs=77.8 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHE Q ss_conf 20102456788898999998531345670799963665445--310000121024458886421587643-455511210 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGE--NATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMF 257 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE--~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F 257 (343) +.+|++...+-++...+.-++. + ++|+-++ -....=+ .|++ .-+.++..++--+|. -..-.|++- T Consensus 158 ~~~Tr~~~eRI~r~AFe~Ar~~-~--rkkvt~v-~Kanv~~~s~glf--------~~~~~eva~eypdi~~~~~~vD~~a 225 (354) T 3blx_B 158 KLITRDASERVIRYAFEYARAI-G--RPRVIVV-HKSTIQRLADGLF--------VNVAKELSKEYPDLTLETELIDNSV 225 (354) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-T--CSEEEEE-ESCTTTCHHHHHH--------HHHHHHHGGGCTTSEEEEEEHHHHH T ss_pred EEEEEHHHHHHHHHHHHHHHHH-C--CCCCEEE-ECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCHHHEEHHHH T ss_conf 5786116889999989999973-8--9973378-6255301308999--------9999999987687621020241677 Q ss_pred ECC--CCCCCC--EEEE--EECCHHHHHH------HHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHH Q ss_conf 002--236676--8999--8512022555------541447727999208764755887552221336866838999999 Q gi|254780397|r 258 HHS--ARQCYD--VAIC--MYHDQALIPI------KTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSAL 325 (343) Q Consensus 258 ~~~--~~~~~D--~vla--mYHDQglip~------K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai 325 (343) ..- +-.+|| ++|+ ||=|= |.-+ =.+..--+.| +|-.+----|-||+|-||||||+|||.+|+.|. T Consensus 226 ~~lv~~P~~fD~~Viv~~NlfGDI-lSDl~a~l~~G~~g~~~s~~--~g~~~~~fEp~HGSApdiaGk~iaNP~a~IlS~ 302 (354) T 3blx_B 226 LKVVTNPSAYTDAVSVCPNLYGDI-LSDLNSGLSAGSLGLTPSAN--IGHKISIFEAVHGSAPDIAGQDKANPTALLLSS 302 (354) T ss_dssp HHHHHCGGGGTTEEEEECHHHHHH-HHHHHHHHHTSSGGGCEEEE--EESSCEEEEECSCCCGGGTTTTCCCTHHHHHHH T ss_pred HHHHCCHHHHCCCEEECCCHHHHH-HHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHH T ss_conf 775029877265345324046788-88887651267544344433--333322247777762543699863919999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780397|r 326 KIAAQL 331 (343) Q Consensus 326 ~~a~~~ 331 (343) -+-++. T Consensus 303 amML~~ 308 (354) T 3blx_B 303 VMMLNH 308 (354) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 14 >1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Probab=97.35 E-value=0.00021 Score=45.56 Aligned_cols=136 Identities=14% Similarity=0.225 Sum_probs=79.1 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343) +.+|++.+.+-++...+.-++ .+.| |....-.. .+.+ + ....-+.++.-++--+| .-..-.|.+... T Consensus 169 ~~~tr~~~~Ria~~Af~~A~~----~~k~--Vt~v~KaN---v~~~--~-~lf~~~~~eva~~yp~I~~~~~~vD~~~~~ 236 (366) T 1vlc_A 169 MIYDRKTVERIARTAFEIAKN----RRKK--VTSVDKAN---VLYS--S-MLWRKVVNEVAREYPDVELTHIYVDNAAMQ 236 (366) T ss_dssp CCCCHHHHHHHHHHHHHHHHT----TTSE--EEEEECTT---TCHH--H-HHHHHHHHHHHTTCTTSEEEEEEHHHHHHH T ss_pred EEECHHHHHHHHHHHHHHHHH----CCCC--EEEEECCC---CCCC--C-HHHHHHHHHHHHHCCCEEEEEEEHHHHHHH T ss_conf 995689999999999999986----7994--79994477---6443--3-889999999997789808998639899999 Q ss_pred C--CCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 2--2366768999--8512----022555541447727999208764755887552221336866838999999999999 Q gi|254780397|r 260 S--ARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 260 ~--~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) - .-..||++|+ ||-| .+..-.=.+++--+.|+ |-+. -.-|-||||.||||||+|||.+|+-|.-+-++- T Consensus 237 lv~~P~~fdViv~~Nl~GDIlSDlaa~l~GglGl~ps~ni--g~~~-~fEp~HGSApdiaGk~iaNP~a~Ils~ammL~h 313 (366) T 1vlc_A 237 LILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASF--GDKN-LYEPAGGSAPDIAGKNIANPIAQILSLAMMLEH 313 (366) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEE--SSSE-EEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHH T ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC--CCCE-EECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 8639754778855443301788899986387423554424--8652-210266871242699864939999999999875 No 15 >3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Probab=97.30 E-value=0.00035 Score=44.20 Aligned_cols=138 Identities=9% Similarity=0.152 Sum_probs=81.1 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHE Q ss_conf 20102456788898999998531345670799963665445--310000121024458886421587643-455511210 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGE--NATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMF 257 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE--~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F 257 (343) +.+|+..+.+-++...+.-++. + +.++- +.=-...-+ .|++ +|+. -+.+.+..-+|. -..-.|++- T Consensus 152 ~~~tr~~~eRiar~AFe~A~~r-~--~k~vt-~v~KaNvl~~s~glf-~~~~------~e~a~~~yp~v~~~~~~vD~~~ 220 (349) T 3blx_A 152 KVMTRPKTERIARFAFDFAKKY-N--RKSVT-AVHKANIMKLGDGLF-RNII------TEIGQKEYPDIDVSSIIVDNAS 220 (349) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-T--CCEEE-EEECTTTSTTHHHHH-HHHH------HHHHHHHCTTSEEEEEEHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHC-C--CCCEE-EEECCCCCCCCCCHH-HHHH------HHHHHHCCCCCHHHHHHHHHHH T ss_conf 5764999999999999998862-8--98637-997577652342039-9999------9998742885112366688999 Q ss_pred ECC--CCCCCCEEEEE------ECCHHHHHHHHHCCCCEEEEEEECCEEEECC-CCCCCHHHCCCCCCCHHHHHHHHHHH Q ss_conf 002--23667689998------5120225555414477279992087647558-87552221336866838999999999 Q gi|254780397|r 258 HHS--ARQCYDVAICM------YHDQALIPIKTLDFNQTVNITLGLPFVRTSP-DHGTAFDIAGSSLTQEESLVSALKIA 328 (343) Q Consensus 258 ~~~--~~~~~D~vlam------YHDQglip~K~l~f~~~Vn~t~GLp~irtSp-dHGTafdiagk~~a~~~s~~~ai~~a 328 (343) ..- .-.+||++|+. -.|++-.-.-.+++--+.|+--. .--..| -||||-||||||+|||.+|+.|.-+- T Consensus 221 ~~lv~~P~~fdVIv~~Nl~GDIlSD~~a~l~G~lGl~psanig~~--~~~fep~~hGsapdiaG~~iaNP~a~ils~amm 298 (349) T 3blx_A 221 MQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRD--YAVFEPGSRHVGLDIKGQNVANPTAMILSSTLM 298 (349) T ss_dssp HHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESS--CEEECCTTTTSCC--CCTTCSCCHHHHHHHHHH T ss_pred HHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHH T ss_conf 886238766647764225688999999875078777874446887--512544566554223489851949999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780397|r 329 AQL 331 (343) Q Consensus 329 ~~~ 331 (343) ++- T Consensus 299 L~~ 301 (349) T 3blx_A 299 LNH 301 (349) T ss_dssp HHH T ss_pred HHH T ss_conf 998 No 16 >1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Probab=97.20 E-value=0.00056 Score=42.98 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=82.2 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEEC-- Q ss_conf 010245678889899999853134567079996366544531000012102445888642158764345551121000-- Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHH-- 259 (343) Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~-- 259 (343) .+|++...+-++...+.-++. +++-..|--=|=+..-.|++-.+.. +.....+.+ ...-.|++-.. T Consensus 140 ~~tr~~~eRIar~Af~~A~~r---~~~vt~v~KaNvl~~~~~~~~~~~~--------~~~~~~i~~-~~~~vD~~~~~lv 207 (336) T 1wpw_A 140 IITRFASERIAKVGLNFALRR---RKKVTCVHKANVMRITDGLFAEACR--------SVLKGKVEY-SEMYVDAAAANLV 207 (336) T ss_dssp EEEHHHHHHHHHHHHHHHHTT---TSEEEEEECTTTCTTHHHHHHHHHH--------HHHTTTSEE-EEEEHHHHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHCCCHHHEEEE--------EEECEEEEE-EEEEHHHHHHHHH T ss_conf 986145649999999999972---9926999777534001330310012--------121105898-5344779999997 Q ss_pred CCCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 223667689998--5----120225555414477279992087647558875522213368668389999999999999 Q gi|254780397|r 260 SARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLG 332 (343) Q Consensus 260 ~~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~ 332 (343) ..-.+||++|+- | .|.+..-+=.++.--+.|+--+ .----|-||||.||||||+|||.+++-|.-+-++.. T Consensus 208 ~~P~~fdViv~~Nl~GDIlSD~~a~l~G~lGl~ps~nig~~--~a~fEp~hGsapdiaGk~iaNP~a~Ils~ammL~~l 284 (336) T 1wpw_A 208 RNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDK--KALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERM 284 (336) T ss_dssp HCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSS--CEEEEESSCCCTTTTTSSCCCTHHHHHHHHHHHHHH T ss_pred HCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEECCC--CEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 58986657975428787888999998613466654121898--556303444551126998608099999999999985 No 17 >2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} Probab=97.19 E-value=0.00041 Score=43.82 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=77.6 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE Q ss_conf 201024567888989999985313456707999-63665445310000121024458886421587643-4555112100 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~ 258 (343) +.+|.....+-++...+.-++. + +-++-++ ==|=-.--.|+| .-+.++..++--+|. -.+=.|.+-. T Consensus 160 k~itr~~seRI~r~AFe~A~~~-~--rkkVt~v~KaNvmk~t~glf--------~~~~~eva~eyPdI~~e~~~VD~~a~ 228 (496) T 2d1c_A 160 KLISWKGSEKIVRFAFELARAE-G--RKKVHCATKSNIMKLAEGTL--------KRAFEQVAQEYPDIEAVHIIVDNAAH 228 (496) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-T--CCEEEEEECTTTCTTHHHHH--------HHHHHHHHTTCTTSEEEEEEHHHHHH T ss_pred CEEECCCHHHHHHHHHHHHHHC-C--CCCEEEEECCCHHHHHHHHH--------HHHHHHHHHHCCCEEEEECHHHHHHH T ss_conf 1152011456778999999864-9--98337751344011225899--------99999998567965998550558999 Q ss_pred C--CCCCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 0--22366768999--851----202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 259 H--SARQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 259 ~--~~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) . ..-.+||++|+ ||= |.+-.-.=.++.--+.|+. --+----|-||||-||||||+|||.+|+.|.-+-++ T Consensus 229 ~Lv~~P~~FDVIVt~NlfGDILSDlaa~l~GslGlapSaniG--~~~amFEpvHGSAPdiAGk~iANP~a~IlSaamML~ 306 (496) T 2d1c_A 229 QLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIG--NEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLR 306 (496) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEEC--SSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHHH T ss_pred HHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 973195337766214214678888888753874345532017--985577778887234379987591999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) . T Consensus 307 h 307 (496) T 2d1c_A 307 Y 307 (496) T ss_dssp H T ss_pred H T ss_conf 8 No 18 >1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Probab=97.19 E-value=0.00045 Score=43.56 Aligned_cols=135 Identities=15% Similarity=0.213 Sum_probs=74.8 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHHEEC Q ss_conf 01024567888989999985313456707999636654453100001210244588864215--8764345551121000 Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSMFHH 259 (343) Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~F~~ 259 (343) .+|+..+.+..+...+. .+. + ++ ++-++ .-.. .+-. .+...-+.++.-++ ++.++ ..-.|.+... T Consensus 161 ~~t~~~~~ri~~~Af~~-a~~-~-~k-~Vt~v--~KaN----v~~~--~~lf~~~~~eva~~yp~i~~~-~~~vD~~~~~ 227 (358) T 1a05_A 161 VYDEDEIRRIAHVAFRA-AQG-R-RK-QLCSV--DKAN----VLET--TRLWREVVTEVARDYPDVRLS-HMYVDNAAMQ 227 (358) T ss_dssp EEEHHHHHHHHHHHHHH-HHT-T-TS-EEEEE--ECTT----TCHH--HHHHHHHHHHHGGGCTTSEEE-EEEHHHHHHH T ss_pred EECHHHHHHHHHHHHHH-HHH-C-CC-EEEEE--ECCC----CCCH--HHHHHHHHHHHHCCCCCEEEE-EEHHHHHHHH T ss_conf 97389999999999999-982-7-98-17898--5330----1234--789999999996538966999-7138899999 Q ss_pred C--CCCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 2--2366768999--851----2022555541447727999208764755887552221336866838999999999999 Q gi|254780397|r 260 S--ARQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 260 ~--~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) - .-.+||++|+ ||= |.+-.-.=.+++--+.|+.-+ +----|-||||.||||||+|||.+|+-|.-+-++. T Consensus 228 lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglG~~psanig~~--~a~fEp~hGsapdiaGk~~aNP~a~Ils~ammL~~ 305 (358) T 1a05_A 228 LIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEG--RAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRH 305 (358) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEECSS--CEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHH T ss_pred HHHCHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCC--CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 8739144778875406788999999885389766541020687--42234567864433699865939999999999974 No 19 >1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus} Probab=97.13 E-value=0.00055 Score=43.04 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=79.2 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE Q ss_conf 201024567888989999985313456707999-63665445310000121024458886421587643-4555112100 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~ 258 (343) +.+|++...+-++...+.-++. .+.++-++ ==|=----.|+| .-+.++..++--+|. -..-.|++-. T Consensus 139 ~~~Tr~~~eRI~r~Afe~A~~r---~rk~vt~v~K~nv~~~~~g~f--------~~~~~e~ak~yp~I~~~~~~vD~~~~ 207 (333) T 1x0l_A 139 AVISKKASERIGRAALRIAEGR---PRKTLHIAHKANVLPLTQGLF--------LDTVKEVAKDFPLVNVQDIIVDNCAM 207 (333) T ss_dssp EEEEHHHHHHHHHHHHHHHHTS---TTCEEEEEECTTTCTTHHHHH--------HHHHHHHHTTCTTSEEEEEEHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHC---CCCCCCCEECCCCCCCCCHHH--------HHHHHHHHCCCCCEEEEEEHHHHHHH T ss_conf 7620577679999999999976---998875256564451222489--------99999998108853897422679999 Q ss_pred CC--CCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 02--23667689998--5----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 259 HS--ARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 259 ~~--~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) +- .-.+||++|+. | .|.+.--+=.++.--+.|+-- .+----|-||||.||||||+|||.+|+.|.-+-++ T Consensus 208 ~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GslG~~ps~nig~--~~~~fEp~HGsapdiaGk~iaNP~a~ils~ammL~ 285 (333) T 1x0l_A 208 QLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGD--TTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD 285 (333) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECS--SCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHH T ss_pred HHHCCCHHCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--CHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 9856903158301574107788999875248877677530085--31233204688522248986695999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) - T Consensus 286 ~ 286 (333) T 1x0l_A 286 Y 286 (333) T ss_dssp H T ss_pred H T ss_conf 8 No 20 >1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans} SCOP: c.77.1.1 PDB: 2ayq_A 1v5b_A Probab=97.06 E-value=0.00066 Score=42.55 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=75.0 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCHHHEECC Q ss_conf 01024567888989999985313456707999636654453100001210244588864215-87643455511210002 Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND-NKNIIGPLPADSMFHHS 260 (343) Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~-g~~v~GP~paDt~F~~~ 260 (343) .+|...+.+.++...+.-++. +.|+.++ -..+ .+- -..-+..-+-+-+++- ++.+ ...-.|++...- T Consensus 161 ~~t~~~~~riar~af~~A~~~----~kkVt~v-~K~n-----v~~-~~~l~~~~~~eva~~yp~i~~-~~~~vD~~~~~l 228 (366) T 1v53_A 161 AYTREEIERIIEKAFQLAQIR----RKKLASV-DKAN-----VLE-SSRMWREIAEETAKKYPDVEL-SHMLVDSTSMQL 228 (366) T ss_dssp EEEHHHHHHHHHHHHHHHHHT----TSEEEEE-ECTT-----TCH-HHHHHHHHHHHHHTTCTTSEE-EEEEHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHC----CCCEEEE-CCCC-----EEC-CCHHHHHHHHHHHHHCCCEEE-EEEECHHHHHHH T ss_conf 133899999999999999867----9925674-2664-----011-333599999999826897799-998742889998 Q ss_pred C--CCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 2--366768999--851----2022555541447727999208764755887552221336866838999999999999 Q gi|254780397|r 261 A--RQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 261 ~--~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) . -.+||++|+ ||= |.+-.-+=.++.--+.|+...-. ----|-||||.||||||+|||.+|+-|.-+-++. T Consensus 229 v~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~ni~~d~~-a~fEp~HGsApdiaGk~~aNP~a~ilS~ammL~~ 306 (366) T 1v53_A 229 IANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRF-GMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRY 306 (366) T ss_dssp HHCGGGCSEEEECHHHHHHHHHHHTTTTSCTTSCEEEEECSSSC-EEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHH T ss_pred HHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCC-EEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 31866566452140688899999998627755466426569864-6861577865776699875949999999999986 No 21 >1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Probab=97.03 E-value=0.00086 Score=41.86 Aligned_cols=137 Identities=12% Similarity=0.200 Sum_probs=78.8 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE Q ss_conf 2010245678889899999853134567079996366544-5310000121024458886421587643-4555112100 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAG-ENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAG-E~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~ 258 (343) +.+|+..+.+-++...+.-++. .+ |+-++ -..+.= ..|+ ..-+.++.-++--+|. -..-.|++.. T Consensus 165 ~~~t~~~~~Ri~r~Af~~A~~~---~k-kVt~v-~K~Nilk~~~l--------f~~~~~eva~~yp~i~~~~~~vD~~~~ 231 (363) T 1cnz_A 165 EVYHRFEIERIARIAFESARKR---RR-KVTSI-DKANVLQSSIL--------WREIVNDVAKTYPDVELAHMYIDNATM 231 (363) T ss_dssp EEEEHHHHHHHHHHHHHHHHTT---TS-EEEEE-ECTTTCHHHHH--------HHHHHHHHHTTCTTSEEEEEEHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHC---CC-CEEEE-ECCCCCCCHHH--------HHHHHHHHHCCCCCEEEEEHHHHHHHH T ss_conf 8863899999999999999967---99-68999-55864431688--------999999986228974885144669999 Q ss_pred CCC--CCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 022--366768999--85----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 259 HSA--RQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 259 ~~~--~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) .-. =..||++|+ || -|++.--+--+++--+.|+.-. .+---.|-||||.|||||++|||.+|+.|.-+-++ T Consensus 232 ~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~nig~~-~~a~fEp~HGsapdiaGk~~aNP~a~IlS~ammL~ 310 (363) T 1cnz_A 232 QLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQ-GFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLR 310 (363) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTT-SCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHH T ss_pred HHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCEECCC-CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 98508666877854532588999999884399765774244698-73686067887300168886693999999999997 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) . T Consensus 311 ~ 311 (363) T 1cnz_A 311 Y 311 (363) T ss_dssp H T ss_pred H T ss_conf 4 No 22 >1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding, oxidoreductase; 2.10A {Thermus thermophilus HB8} SCOP: c.77.1.1 PDB: 1osj_A 1gc8_A 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1gc9_A 1ipd_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Probab=96.95 E-value=0.00086 Score=41.87 Aligned_cols=137 Identities=15% Similarity=0.255 Sum_probs=77.9 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343) +.+|++...+-++...+.-++. +.++-+ ..-.. .+-. -+...-+.++..++-.+| .-..-.|.+-.. T Consensus 155 ~~~tr~~~eRi~r~Af~~A~~~----~k~Vt~--v~KaN----v~~~--~~~~~~~~~eva~~yp~i~~~~~~vD~~~~~ 222 (345) T 1g2u_A 155 ERYSKPEVERVARVAFEVARKR----RKHVVS--VDKAN----VLEV--GEFWRKTVEEVGRGYPDVALEHQYVDAMAMH 222 (345) T ss_dssp CCCCHHHHHHHHHHHHHHHHTT----TSEEEE--EECTT----TCHH--HHHHHHHHHHHHTTCTTSEEEEEEHHHHHHH T ss_pred EEECHHHHHHHHHHHHHHHHHC----CCCEEE--ECCCC----CCCC--CHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH T ss_conf 6873999999999999999975----994577--52656----5555--4578899999854289758985037699998 Q ss_pred CC--CCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 22--366768999--85----12022555541447727999208764755887552221336866838999999999999 Q gi|254780397|r 260 SA--RQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 260 ~~--~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) -. =.+||++|+ || -|++..-.=.++.--+.|+--+-. ---|-||||.||||||+|||.+|+.|.-+-++. T Consensus 223 lv~~P~~fdViv~~Nl~GDIlSDl~a~l~GglGl~~s~nig~~~a--~fEp~HGsApdiaGk~iaNP~a~Ils~ammL~~ 300 (345) T 1g2u_A 223 LVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTP--VFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300 (345) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSCC--EEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHH T ss_pred HHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 612876578553141678899999998627866666420378733--124345644450799864969999999999974 No 23 >2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Probab=96.89 E-value=0.0014 Score=40.66 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=52.4 Q ss_pred CCHHHEEC--CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHH Q ss_conf 51121000--22366768999--8512----0225555414477279992087647558875522213368668389999 Q gi|254780397|r 252 PADSMFHH--SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVS 323 (343) Q Consensus 252 paDt~F~~--~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ 323 (343) -+|.+-.. .+=.+||++|+ ||=| .+-.-.=.++.--+.|+ |--.----|-||||-||||||+|||.+|+- T Consensus 294 ~vD~~a~~lv~~P~~FDVIv~~NlfGDILSDlaa~l~GslGl~pSani--g~~~a~FEp~HGSAPdiaGk~iANP~A~Il 371 (429) T 2d4v_A 294 IADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANL--SDTHAIFEATHGTAPDIAGQGKANPSSLIL 371 (429) T ss_dssp EHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEE--CSSCEEEECSCCCCTTTTTTTCCCCHHHHH T ss_pred HHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCHHHHH T ss_conf 999999998439301757741321447899999998604565641102--898757777988752337999649299999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780397|r 324 ALKIAAQL 331 (343) Q Consensus 324 ai~~a~~~ 331 (343) |.-+-++- T Consensus 372 S~amML~~ 379 (429) T 2d4v_A 372 SAVMMLEH 379 (429) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999998 No 24 >3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Probab=96.82 E-value=0.00059 Score=42.84 Aligned_cols=141 Identities=12% Similarity=0.103 Sum_probs=80.6 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE Q ss_conf 2010245678889899999853134567079996-3665445310000121024458886421587643-4555112100 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISG-LNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~g-LNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~ 258 (343) +.+|++.+.+.++...+.-++. + +.|+-++- =|==..-.| .-.-+.++..++..++. -..-.|.+.. T Consensus 161 ~~~tr~~~eRiar~Af~~A~~~-~--rk~vt~v~KaNv~~~~~~--------~~~~~~~~va~~~p~i~~~~~~vD~~~~ 229 (364) T 3flk_A 161 SIFTRRGVDRILKYAFDLAEKR-E--RKHVTSATKSNGMAISMP--------YWDKRTEAMAAHYPHVSWDKQHIDILCA 229 (364) T ss_dssp EEEEHHHHHHHHHHHHHHHHHS-S--SCEEEEEECTTTSTTHHH--------HHHHHHHHHHTTCTTCEEEEEEHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHH-C--CCCEEEEEECCCCCCCHH--------HHHHHHHHHHCCCCCCCCCEEEHHHHHH T ss_conf 3454999999999999999986-8--987255674587402076--------8999999860003434322256999999 Q ss_pred CCC--CCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEEC-CEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 022--3667689998--5----12022555541447727999208-7647558875522213368668389999999999 Q gi|254780397|r 259 HSA--RQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGL-PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAA 329 (343) Q Consensus 259 ~~~--~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GL-p~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~ 329 (343) .-. -.+||++|+. | .|.+-.-.=.++.--++|+.--- -.----|-||||.||||||+|||.+|+-|.-+-+ T Consensus 230 ~lv~~P~~fdViv~~Nl~GDIlSD~aa~l~G~lG~~psanig~~~~~~a~fEp~hGsapdiaGk~iANP~a~Ils~ammL 309 (364) T 3flk_A 230 RFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALML 309 (364) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 98528864553246615888999999987387433675656766454034146677757757998409499999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780397|r 330 QLG 332 (343) Q Consensus 330 ~~~ 332 (343) +.. T Consensus 310 ~~l 312 (364) T 3flk_A 310 EFL 312 (364) T ss_dssp HHH T ss_pred HHH T ss_conf 983 No 25 >1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Probab=96.80 E-value=0.00071 Score=42.37 Aligned_cols=140 Identities=12% Similarity=0.130 Sum_probs=70.4 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343) +.+|+..+.+-++...+.-++. ++....|-==|=..-=.|+|= -+.++.-++--++ .-..-.|++-.. T Consensus 149 ~~~t~~~~~RIar~Afe~A~~r---rk~vt~v~Kanv~~~t~glf~--------~~~~eva~~yp~i~~~~~~vD~~~~~ 217 (337) T 1w0d_A 149 SVNTAFGVRRVVADAFERARRR---RKHLTLVHKTNVLTFAGGLWL--------RTVDEVGECYPDVEVAYQHVDAATIH 217 (337) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT---TSEEEEEECTTTSHHHHHHHH--------HHHHHHHTTCTTSEEEEEEHHHHHHH T ss_pred EECCHHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHH--------HHHHHHHHHCCCCEEHHHHHHHHHHH T ss_conf 6132677767789999999848---995699968872145779999--------99999886578734115758799998 Q ss_pred --CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEEC-CEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf --22366768999--8512----022555541447727999208-76475588755222133686683899999999999 Q gi|254780397|r 260 --SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGL-PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 260 --~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GL-p~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) .+-.+||++|+ ||=| ++-.-.=.++.--+.|+--.- .+----|-||||.||||||+|||.+|+-|.-+-++ T Consensus 218 lv~~P~~fdViv~~Nl~GDilSDlaa~l~GglGl~psan~g~~~~~~a~fEp~HGsapdiaGk~iaNP~a~ils~ammL~ 297 (337) T 1w0d_A 218 MITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLS 297 (337) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGGTTSSCSCCHHHHHHHHHHHH T ss_pred HCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 62598537679875156788999998861865325666667431331000356665054469996495999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) - T Consensus 298 ~ 298 (337) T 1w0d_A 298 H 298 (337) T ss_dssp H T ss_pred H T ss_conf 8 No 26 >2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Probab=96.78 E-value=0.0017 Score=40.12 Aligned_cols=77 Identities=25% Similarity=0.247 Sum_probs=54.9 Q ss_pred CHHHEEC--CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHH Q ss_conf 1121000--22366768999--8512----02255554144772799920876475588755222133686683899999 Q gi|254780397|r 253 ADSMFHH--SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSA 324 (343) Q Consensus 253 aDt~F~~--~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~a 324 (343) .|++-.. .+-.+||++|+ ||=| .+..-+=.++.--+.|+- =-+----|-||||-||||||+|||.+++-| T Consensus 276 vD~~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGl~pSanig--~~~a~FEp~HGSAPdiaGk~iANP~a~IlS 353 (412) T 2iv0_A 276 ADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG--DGIGVFEPVHGSAPKYAGQNKVNPTAEILT 353 (412) T ss_dssp GGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEE--TTEEEEEESSCCCSTTTTSSCSCCHHHHHH T ss_pred HHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CCCEEEECCCCCHHHHCCCCCCCCHHHHHH T ss_conf 789998750187768766205403468888888853887777744468--974321046685155468987695999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780397|r 325 LKIAAQL 331 (343) Q Consensus 325 i~~a~~~ 331 (343) .-+-++. T Consensus 354 ~amML~~ 360 (412) T 2iv0_A 354 GALMFEY 360 (412) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999998 No 27 >1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Probab=96.73 E-value=0.00086 Score=41.88 Aligned_cols=145 Identities=15% Similarity=0.122 Sum_probs=75.6 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCH-------HHHHHHHHHHHCCCCC--CC Q ss_conf 3201024567888989999985313456707999-636654453100001210-------2445888642158764--34 Q gi|254780397|r 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKN-------IIIPAITYLRNDNKNI--IG 249 (343) Q Consensus 180 ~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~-------iI~PaI~~~~~~g~~v--~G 249 (343) .+.+|+....+-++...+.-++. .+.++.++ -=|=...=.|+|-+.=.+ .....-.+..++--++ ++ T Consensus 201 ~~~itr~~~~Ri~r~Af~~A~~r---~rk~vt~v~KaNv~~~t~glf~~~~~eva~~~f~~~~~~~~~~~~~yp~v~~e~ 277 (435) T 1tyo_A 201 VKPISRFATRRLMERALEWALRN---GNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEG 277 (435) T ss_dssp EEEEEHHHHHHHHHHHHHHHHHH---TCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTTCCCTT T ss_pred EEEEEHHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC T ss_conf 89975577899999989999864---898089995886100102169999999998775331002577887547767565 Q ss_pred C-----CCCHHHEEC--CCCCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCC Q ss_conf 5-----551121000--22366768999--851----2022555541447727999208764755887552221336866 Q gi|254780397|r 250 P-----LPADSMFHH--SARQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLT 316 (343) Q Consensus 250 P-----~paDt~F~~--~~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a 316 (343) . .=.|++=.. ..-.+||++|+ ||= |.+-.-.=.+++--+.|+.-+ +----|-||||.||||||+| T Consensus 278 ~I~~~~~~vD~~a~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~pSan~g~~--~a~fEpvHGSAPdiaGk~iA 355 (435) T 1tyo_A 278 KILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDG--IAVAEPVHGTAPKYAGKDLI 355 (435) T ss_dssp CEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSS--CEEEEESSCCCGGGTTSSCS T ss_pred CEEEEEHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CEEEECCCCCCCCCCCCCCC T ss_conf 2489653677999998239644757985330367888999887447775567567998--27986898873000699853 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8389999999999 Q gi|254780397|r 317 QEESLVSALKIAA 329 (343) Q Consensus 317 ~~~s~~~ai~~a~ 329 (343) ||.+|+-|.-+-+ T Consensus 356 NPia~IlS~amML 368 (435) T 1tyo_A 356 NPSAEILSASLLI 368 (435) T ss_dssp CCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 9199999999999 No 28 >3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Probab=96.67 E-value=0.001 Score=41.46 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=48.1 Q ss_pred CCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 66768999--8512----022555541447727999208764755887552221336866838999999999999 Q gi|254780397|r 263 QCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 263 ~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) .+||++|+ ||=| .+-.-.=.++.--+.|+ |-..----|-||||-||||||+|||.+|+-|.-+-++. T Consensus 304 ~~FDViv~~NlfGDILSDlaa~l~GslGl~pSani--g~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~amML~~ 376 (427) T 3dms_A 304 AEYDVIATLNLNGDYISDALAAQVGGIGIAPGANL--SDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRH 376 (427) T ss_dssp GGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEE--CSSCEEEEECSCCCGGGTTSSCSCCHHHHHHHHHHHHH T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 55657740343443113466652377531244556--89876987898872344799966909999999999997 No 29 >1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3inm_A* 2cmj_A* 2cmv_A* Probab=95.66 E-value=0.0023 Score=39.29 Aligned_cols=146 Identities=10% Similarity=-0.059 Sum_probs=75.5 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHH---HHHHHHHHCCCCCCCCCCCHHHEE Q ss_conf 01024567888989999985313456707999636654453100001210244---588864215876434555112100 Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIII---PAITYLRNDNKNIIGPLPADSMFH 258 (343) Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~---PaI~~~~~~g~~v~GP~paDt~F~ 258 (343) ..|.+.+.+-.+...+..++. +++...|.==|==.--+|+|= |....+. |-++ .....++.. ..-.|.+.. T Consensus 183 ~~t~~~~~ri~r~af~~A~~~---r~kvt~v~KaNv~~~~dglf~-~~~~eva~~~~~~~-~~~~~I~~~-~~~~d~~~~ 256 (413) T 1lwd_A 183 YNTDESISGFAHSCFQYAIQK---KWPLYMSTKNTILKAYDGRFK-DIFQEIFEKHYKTD-FDKYKIWYE-HRLIDDMVA 256 (413) T ss_dssp EEEHHHHHHHHHHHHHHHHHH---TCCEEEEECTTTSTTHHHHHH-HHHHHHHHHHTHHH-HHHTTCCEE-EEEHHHHHH T ss_pred EEEHHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHH-HHHHHHHHHHHHCC-CCEEEEEEE-HHHHHHHHH T ss_conf 640038899999999999855---974478860563231334899-99999998730013-430489962-456788878 Q ss_pred CC-CCCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEE------EECCCCCCCHHHCCCCCCCHHHHHHHH Q ss_conf 02-2366768999--85----12022555541447727999208764------755887552221336866838999999 Q gi|254780397|r 259 HS-ARQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFV------RTSPDHGTAFDIAGSSLTQEESLVSAL 325 (343) Q Consensus 259 ~~-~~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~i------rtSpdHGTafdiagk~~a~~~s~~~ai 325 (343) .- ...+||++|+ || -|.+-.-.-.+++--+.|+--.-... =+.||||.|+||||||+|||.+|+-|. T Consensus 257 ~lv~~~~~dVivt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~~~E~~hgsap~~~ga~diagk~iANP~A~IlS~ 336 (413) T 1lwd_A 257 QVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAW 336 (413) T ss_dssp HHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHH T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCHHHHCCCCCCCHHHHHHHH T ss_conf 74179877199974521257776778753885545543127998722551576862420424540687632879999999 Q ss_pred HHHHHHHH Q ss_conf 99999998 Q gi|254780397|r 326 KIAAQLGY 333 (343) Q Consensus 326 ~~a~~~~~ 333 (343) -+.++..- T Consensus 337 amML~~lg 344 (413) T 1lwd_A 337 TRGLEHRG 344 (413) T ss_dssp HHHHHHHH T ss_pred HHHHHHHC T ss_conf 99999734 No 30 >2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Probab=95.15 E-value=0.0062 Score=36.70 Aligned_cols=69 Identities=10% Similarity=-0.061 Sum_probs=47.6 Q ss_pred CCCEEEEEE------CCHHHHHHHHHCCCCEEEEEEECCEE------EECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 676899985------12022555541447727999208764------755887552221336866838999999999999 Q gi|254780397|r 264 CYDVAICMY------HDQALIPIKTLDFNQTVNITLGLPFV------RTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 264 ~~D~vlamY------HDQglip~K~l~f~~~Vn~t~GLp~i------rtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) .++++++.= -|++-.-+-.+++--++|+.-.-.+. -|-|+||+|.|+|||++|||.+++-|.-+.++- T Consensus 279 ~~fviv~~Nl~GDIlSD~~a~~~GslGl~pS~ni~~~~~~~e~Ea~Hgtap~h~~a~~~ag~~~aNP~a~Ils~~mmL~h 358 (427) T 2qfy_A 279 GGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLK 358 (427) T ss_dssp EEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 76389961442158888988743885522101116887750341531164212533341587766869999999999997 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 332 G 332 (343) Q Consensus 332 ~ 332 (343) . T Consensus 359 ~ 359 (427) T 2qfy_A 359 R 359 (427) T ss_dssp H T ss_pred H T ss_conf 5 No 31 >2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Probab=94.48 E-value=0.02 Score=33.65 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=48.7 Q ss_pred CCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCC------CCCCCHHHHHHHHHHHHH Q ss_conf 667689998--5----1202255554144772799920876475588755222133------686683899999999999 Q gi|254780397|r 263 QCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG------SSLTQEESLVSALKIAAQ 330 (343) Q Consensus 263 ~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiag------k~~a~~~s~~~ai~~a~~ 330 (343) .+++++++. | -|.+-.-.=-+++--+.|+-- -.+.-.-|-||||-|||| ||+|||.+|+-|.-+.++ T Consensus 259 P~~fViv~~Nl~GDILSD~aa~l~GglGl~pSanig~-~~~~~fEp~HGSAPdiaG~~~~~~k~iaNP~a~ils~ammL~ 337 (402) T 2uxq_A 259 EGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSP-YGYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALR 337 (402) T ss_dssp CCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECT-TSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCC-CCCEEEECCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 9866999636420277776787528877765101378-652243124673220021333188552394999999999999 Q ss_pred HH Q ss_conf 99 Q gi|254780397|r 331 LG 332 (343) Q Consensus 331 ~~ 332 (343) .. T Consensus 338 hl 339 (402) T 2uxq_A 338 KR 339 (402) T ss_dssp HH T ss_pred HH T ss_conf 74 No 32 >1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima MSB8} Probab=91.77 E-value=0.12 Score=28.96 Aligned_cols=78 Identities=14% Similarity=-0.022 Sum_probs=53.8 Q ss_pred HHEECCCCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCC------CCCCCHHHHH Q ss_conf 21000223667689998--5----1202255554144772799920876475588755222133------6866838999 Q gi|254780397|r 255 SMFHHSARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG------SSLTQEESLV 322 (343) Q Consensus 255 t~F~~~~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiag------k~~a~~~s~~ 322 (343) ++..-..-..||++++. | -|++-.-.=.+++--+.|+.-.-+ .-..|-||||-|||| |++|||.+++ T Consensus 249 ~~~~~~~p~~~dVivt~NlfGDIlSDlaa~l~GglGl~psanig~~~~-~~fEp~HGSaPdiag~~~~~gk~~ANP~a~I 327 (399) T 1zor_A 249 AAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGV-YEFEAAHGTVRRHYYRYLKGEKTSTNPTASI 327 (399) T ss_dssp HHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCC-EEEEESSCCCHHHHHHHTTTCCCCCCCHHHH T ss_pred HHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCHHHHHHCCCCCCCHHHHH T ss_conf 997233899875999404345313135665338764244211378776-4331114446510577875577731849999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999998 Q gi|254780397|r 323 SALKIAAQLGY 333 (343) Q Consensus 323 ~ai~~a~~~~~ 333 (343) -|.-+.++-.- T Consensus 328 LS~ammL~~lg 338 (399) T 1zor_A 328 FAWTGAIRKRG 338 (399) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999861 No 33 >2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Probab=87.62 E-value=0.29 Score=26.70 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=14.9 Q ss_pred CCCCEEEECCCCCCCCHHHHH Q ss_conf 888389971898774789999 Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISL 23 (343) Q Consensus 3 k~~pI~IT~GDPaGIGpEIil 23 (343) +.+.|++-.|| ||||||+- T Consensus 23 ~~p~I~vipGD--GIGpEV~~ 41 (409) T 2e0c_A 23 NKPVILYIEGD--GIGPEITN 41 (409) T ss_dssp SSBEEEEECCS--TTHHHHHH T ss_pred CCCEEEEECCC--CCHHHHHH T ss_conf 99889997988--52699999 No 34 >1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Probab=84.64 E-value=0.36 Score=26.11 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=18.1 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHH Q ss_conf 988883899718987747899999 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLK 24 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilK 24 (343) |++.-+|++-.|| ||||||+-- T Consensus 1 Msk~ykI~vipGD--GIGpEv~~~ 22 (363) T 1cnz_A 1 MSKNYHIAVLPGD--GIGPEVMAQ 22 (363) T ss_dssp CCCCEEEEEEEES--TTHHHHHHH T ss_pred CCCCCEEEEECCC--CCHHHHHHH T ss_conf 9998659998878--887999999 No 35 >1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Probab=84.53 E-value=0.37 Score=26.08 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=15.7 Q ss_pred CCCEEEECCCCCCCCHHHHHHH Q ss_conf 8838997189877478999998 Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKA 25 (343) Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKa 25 (343) |+||++-.|| ||||||+--+ T Consensus 1 mkkI~vipGD--GIGpEV~~a~ 20 (358) T 1a05_A 1 MKKIAIFAGD--GIGPEIVAAA 20 (358) T ss_dssp CCEEEEEEES--TTHHHHHHHH T ss_pred CCEEEEECCC--CCHHHHHHHH T ss_conf 9789998978--8879999999 No 36 >1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Probab=83.36 E-value=0.44 Score=25.61 Aligned_cols=122 Identities=19% Similarity=0.156 Sum_probs=57.1 Q ss_pred CCCEEEECCCCCCCCHHHHHHHH------CC-------------------------CCHHCCCCEEEECC---H------ Q ss_conf 88389971898774789999984------28-------------------------52324898999939---9------ Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAW------AS-------------------------RQITAIPPFIYIGD---V------ 43 (343) Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal------~~-------------------------~~~~~~~~~viigd---~------ 43 (343) |+||++-.|| ||||||+--+. .. .+.-+.+..++.|. + T Consensus 1 M~kI~vipGD--GIGpEV~~~~~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~G~vg~p~~~~~~ 78 (337) T 1w0d_A 1 MSKLAIIAGD--GIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGV 78 (337) T ss_dssp CCEEEEEEES--TTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTH T ss_pred CCEEEEECCC--CCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC T ss_conf 9889997888--75399999999999986068669999630520885399375999999985894987887999899887 Q ss_pred ---HHHHHHHHHCCCCCCEEECCCCHHCC-C--CCCCEEEECCCC-CCCCCCCC--------CC-------CCCCHHHHH Q ss_conf ---99999999818997447538610111-2--678537610333-22001355--------31-------000002467 Q gi|254780397|r 44 ---DVLNARAKQLNLSVPLYETDCKNAVS-I--FKKALPIISSPC-GAKIVTGT--------PN-------PQTASSTIA 101 (343) Q Consensus 44 ---~~l~~~~k~l~~~~~i~~i~~~~~~~-~--~~~~i~i~~~~~-~~~~~~G~--------~s-------~~~g~~~~~ 101 (343) ..+-.-.+.+++-.+++.+....... . ....++++-+.. ......|. +. .-+...+-+ T Consensus 79 ~~~~~~l~LR~~ldlyaniRP~r~~~g~~~~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~e~a~~~~~~t~~~~~R 158 (337) T 1w0d_A 79 LERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRR 158 (337) T ss_dssp HHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHH T ss_pred CCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEEEEECCHHHHHH T ss_conf 66466589999708761466521368888844577898789871025562005786032589873599986132677767 Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHH Q ss_conf 78877664301234304432234477764 Q gi|254780397|r 102 NIEKAVSLTLSGQALAIVTNPIAKFLLYQ 130 (343) Q Consensus 102 sl~~A~~l~~~g~~~alVT~PInK~~l~~ 130 (343) -.+.|.+++++. ..-||. ++|.++.+ T Consensus 159 Iar~Afe~A~~r--rk~vt~-v~Kanv~~ 184 (337) T 1w0d_A 159 VVADAFERARRR--RKHLTL-VHKTNVLT 184 (337) T ss_dssp HHHHHHHHHHHT--TSEEEE-EECTTTSH T ss_pred HHHHHHHHHHHC--CCCEEE-EECCCCCH T ss_conf 789999999848--995699-96887214 No 37 >2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Probab=76.45 E-value=1.6 Score=22.23 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 888989999985313456707999 Q gi|254780397|r 190 ETSDTVYNAMKKYFGINNPRIAIS 213 (343) Q Consensus 190 ~ki~~~~~~l~~~~gi~~PkIaV~ 213 (343) ..+..+...+++.+..+..+.-|. T Consensus 185 G~~~y~~~~l~~l~~~~~~~~~i~ 208 (332) T 2bon_A 185 GSVSYIIHGLMRMDTLQPDRCEIR 208 (332) T ss_dssp HHHHHHHHHTSCEEEEECEEEEEE T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 623677889998740577238999 No 38 >2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Probab=74.71 E-value=2.6 Score=20.99 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=8.6 Q ss_pred HHHHHHHHHCCCCCEEEECHH Q ss_conf 887766430123430443223 Q gi|254780397|r 103 IEKAVSLTLSGQALAIVTNPI 123 (343) Q Consensus 103 l~~A~~l~~~g~~~alVT~PI 123 (343) +..|++...++...-+--+-+ T Consensus 130 ~~~a~~~i~~g~~~~id~~~v 150 (337) T 2qv7_A 130 IMGALDVIIEGHSTKVDIGKM 150 (337) T ss_dssp HHHHHHHHHHTCEEEEEEEEE T ss_pred HHHHHHHHHCCCCEEEEEEEE T ss_conf 688888774387089878788 No 39 >1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Probab=59.86 E-value=2 Score=21.64 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=5.0 Q ss_pred CCCCEEEEEE Q ss_conf 6676899985 Q gi|254780397|r 263 QCYDVAICMY 272 (343) Q Consensus 263 ~~~D~vlamY 272 (343) .+.|++||.+ T Consensus 80 ~~~D~viA~l 89 (167) T 1s2d_A 80 SNATCGVFLY 89 (167) T ss_dssp HHCSEEEEEE T ss_pred HHCCEEEEEE T ss_conf 8699999995 No 40 >2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* Probab=59.66 E-value=5.3 Score=19.10 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=64.5 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-----C----CCCCHHHEECC--CCCCCCEEEEE Q ss_conf 1345670799963665445310000121024458886421587643-----4----55511210002--23667689998 Q gi|254780397|r 203 FGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-----G----PLPADSMFHHS--ARQCYDVAICM 271 (343) Q Consensus 203 ~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-----G----P~paDt~F~~~--~~~~~D~vlam 271 (343) +..+.|||+|-.=.=|. .--...+.-|++.+++.|+.++ | |+.+..+..+. ...+||+++++ T Consensus 8 ~~~~~~kI~IV~s~~n~-------~It~~l~~~a~~~L~~~g~~~~~i~VPGa~EiP~~~~~~~~~~~~~~~~~d~vIal 80 (157) T 2i0f_A 8 HEADAPHLLIVEARFYD-------DLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVAL 80 (157) T ss_dssp ---CCCEEEEEEECSSH-------HHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEE T ss_pred CCCCCCEEEEEECCCCH-------HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 66899989999774888-------99999999999999986997589996607665899999998744036775789998 Q ss_pred --------ECCHHH-----HHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf --------512022-----5555414477279992087647558875522213368668389999999999999852001 Q gi|254780397|r 272 --------YHDQAL-----IPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLC 338 (343) Q Consensus 272 --------YHDQgl-----ip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~~~ 338 (343) +|++-. -.+--+..+.++-|+.| |-|..+.--|.+.++...-|-. .+|..-|++|..-++-. T Consensus 81 G~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~G---ILT~~n~~QA~~R~~~~~~nkG--~eaA~Aal~mi~l~~~l 155 (157) T 2i0f_A 81 GTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNG---ILTVENEEQAWVHARREDKDKG--GFAARAALTMIGLRKKF 155 (157) T ss_dssp EEEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEEE---EEEESSHHHHHHHHCTTTTCHH--HHHHHHHHHHHHHHHHT T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE---EECCCCHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHHHH T ss_conf 878738883589999999999999972169977999---7068999999998286666768--99999999999999874 No 41 >3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Probab=46.01 E-value=15 Score=16.43 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=51.2 Q ss_pred CCCCC-CCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH Q ss_conf 58764-34555112100022366768999851202255554144772799920876475588755222133686683899 Q gi|254780397|r 243 DNKNI-IGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343) Q Consensus 243 ~g~~v-~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343) -.+.+ .-||-.|.+|.- -+|+-||.+ -+|.-||-+-+.+-+----.-|++++. ++. .|.-++| T Consensus 362 P~ih~y~~~~d~~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~ 425 (526) T 3iyk_A 362 PQIHVYSAPWDSDDVFFF-------HCISHHHAN-------ESFFLGFDLSIDLVHYEDLTAHWHALG-AAQ-TAAGRTL 425 (526) T ss_pred CCCEEECCCCCCCCEEEE-------EEECCCCCC-------CEEEEEEECCCCEEEEEECCCCCCCCC-CCC-CCCCCCH T ss_conf 984410688787727899-------852576688-------615887611311245334465443367-762-0578667 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999998 Q gi|254780397|r 322 VSALKIAAQLGY 333 (343) Q Consensus 322 ~~ai~~a~~~~~ 333 (343) .+|.+-=..++. T Consensus 426 ~~~~~~~~~~~~ 437 (526) T 3iyk_A 426 TEAYREFLNLAI 437 (526) T ss_pred HHHHHHHHHHHH T ss_conf 999999999985 No 42 >3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Probab=44.89 E-value=11 Score=17.13 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=6.3 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 102456788898999 Q gi|254780397|r 183 LSTKRIIETSDTVYN 197 (343) Q Consensus 183 it~~~I~~ki~~~~~ 197 (343) ++.+.++++++.+.. T Consensus 112 ~~~~~Ll~~v~~~l~ 126 (142) T 3cg4_A 112 FDNEDLIEKTTFFMG 126 (142) T ss_dssp CCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 999999999999999 No 43 >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Probab=38.89 E-value=18 Score=15.95 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=13.5 Q ss_pred CCCCCEEEECHHHHHHHHHH Q ss_conf 12343044322344777641 Q gi|254780397|r 112 SGQALAIVTNPIAKFLLYQE 131 (343) Q Consensus 112 ~g~~~alVT~PInK~~l~~a 131 (343) +-.+|.-++-|++-+-+... T Consensus 99 ~~GAddyl~KP~~~~eL~a~ 118 (233) T 1ys7_A 99 EAGADDYLVKPFVLAELVAR 118 (233) T ss_dssp TTTCSEEEESSCCHHHHHHH T ss_pred HCCCCEEEECCCCHHHHHHH T ss_conf 77992999789987999999 No 44 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Probab=36.94 E-value=13 Score=16.71 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.6 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCC Q ss_conf 9888838997189877478999998428 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWAS 28 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~ 28 (343) |++|+||+|| |=-.+||..++-.++.. T Consensus 1 m~~m~KIlIt-GatG~iG~~l~~~Ll~~ 27 (227) T 3dhn_A 1 MEKVKKIVLI-GASGFVGSALLNEALNR 27 (227) T ss_dssp --CCCEEEEE-TCCHHHHHHHHHHHHTT T ss_pred CCCCCEEEEE-CCCCHHHHHHHHHHHHC T ss_conf 9999999998-89988999999999978 No 45 >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Probab=36.48 E-value=14 Score=16.55 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=7.9 Q ss_pred CCEEEECHHHHHHHHH Q ss_conf 4304432234477764 Q gi|254780397|r 115 ALAIVTNPIAKFLLYQ 130 (343) Q Consensus 115 ~~alVT~PInK~~l~~ 130 (343) +++.++=|++.+.+.. T Consensus 99 a~~yl~KP~~~~~L~~ 114 (133) T 3nhm_A 99 PDAYLVKPVKPPVLIA 114 (133) T ss_dssp CSEEEESSCCHHHHHH T ss_pred CCEEEECCCCHHHHHH T ss_conf 9789989999999999 No 46 >1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1 Probab=36.22 E-value=9.4 Score=17.62 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=83.0 Q ss_pred CCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 22112665304531333432010245678889899999853134567079996366544531000012102445888642 Q gi|254780397|r 162 GPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR 241 (343) Q Consensus 162 ~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~ 241 (343) +..||++.+. ..-+++...+-+.-..+.|.+ .|++.-.|-|.- =| |.=| |-=+++.+- T Consensus 13 ~s~lrI~IV~---------s~~n~~I~~~Ll~~a~~~L~~-~gv~~~~i~v~~-VP--------GA~E---iP~a~~~l~ 70 (200) T 1c41_A 13 GSALRIGIVH---------ARWNETIIEPLLAGTKAKLLA-CGVKESNIVVQS-VP--------GSWE---LPIAVQRLY 70 (200) T ss_dssp CSSCCEEEEE---------ECTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEE-ES--------STTH---HHHHHHHHH T ss_pred CCCCEEEEEE---------EECCHHHHHHHHHHHHHHHHH-CCCCCCCEEEEE-CC--------CHHH---HHHHHHHHH T ss_conf 8899999998---------008799999999999999998-699802469999-15--------1989---999999998 Q ss_pred H-C-------CC-----CCCCCCCCHHHEEC----CCCCCCCEEEEE--------ECCHHHH-----HHHHHCCCCEEEE Q ss_conf 1-5-------87-----64345551121000----223667689998--------5120225-----5554144772799 Q gi|254780397|r 242 N-D-------NK-----NIIGPLPADSMFHH----SARQCYDVAICM--------YHDQALI-----PIKTLDFNQTVNI 291 (343) Q Consensus 242 ~-~-------g~-----~v~GP~paDt~F~~----~~~~~~D~vlam--------YHDQgli-----p~K~l~f~~~Vn~ 291 (343) + . |+ +.-|..+.|+.-.. +..++||++++. +|.+-.. .+--+..+.++-+ T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~yDaiIaLG~VIkGeT~Hfe~I~~~v~~gL~~lsl~~~~PI 150 (200) T 1c41_A 71 SASQLQTPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPV 150 (200) T ss_dssp HHHHHC------------------------------CCSCCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTSCE T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 73222211222221111112344332111001345432787779998888707871789999999999999971469856 Q ss_pred EEECCEEEECCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 9208764755887552221336--86683899999999999998520010 Q gi|254780397|r 292 TLGLPFVRTSPDHGTAFDIAGS--SLTQEESLVSALKIAAQLGYQKNLCN 339 (343) Q Consensus 292 t~GLp~irtSpdHGTafdiagk--~~a~~~s~~~ai~~a~~~~~~~~~~~ 339 (343) ..| |-|....--|++.+|- |.-|- =.+|..-|++|+.-|+... T Consensus 151 ~~G---VLT~~n~eQA~~Rag~~~g~~NK--G~EaA~AaleM~~l~r~~~ 195 (200) T 1c41_A 151 IFG---VLTVLTDDQAKARAGVIEGSHNH--GEDWGLAAVEMGVRRRDWA 195 (200) T ss_dssp EEE---EEEESSHHHHHHHTTCSTTCCCH--HHHHHHHHHHHHHHHHHHH T ss_pred EEE---ECCCCCHHHHHHHCCCCCCCCCC--HHHHHHHHHHHHHHHHHHH T ss_conf 998---53679989999872777888756--8999999999999999875 No 47 >2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A Probab=36.01 E-value=21 Score=15.48 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=41.4 Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC------------CCCCCEE---EEEC Q ss_conf 664301234304432234477764101325647899998342358866521123------------3221126---6530 Q gi|254780397|r 107 VSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML------------SGPQLRT---VPVT 171 (343) Q Consensus 107 ~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll------------~~~~L~V---~l~T 171 (343) .++.+.-.++++|+|-|.=. .|-+|....|..- +. .+++.| ....+++ +-.+ T Consensus 83 ~~~l~~~~v~~iv~Gdi~~~----------~~~~~~e~~~~~~-gl--~~~~PLW~~d~~~ll~e~i~~G~~aiiv~v~~ 149 (227) T 2d13_A 83 KNVLEGLKVDGIVAGALASR----------YQKERIENVAREL-GL--KVYTPAWEKDPYQYMLEIIKLGFKVVFVAVSA 149 (227) T ss_dssp HHHHHTBCCSEEECCCSSCH----------HHHHHHHHHHHHH-TC--EEECTTTTCCHHHHHHHHHHTTCEEEEEEECS T ss_pred HHHHHHHCCCEEEEEEEEEH----------HHHHHHHHHHHHC-CC--EEECCCCCCCHHHHHHHHHHCCCEEEEEEECC T ss_conf 99999717560786237628----------8999999999874-98--88733248877999999998799099999745 Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC Q ss_conf 453133343201024567888989999985313456707999636654453100 Q gi|254780397|r 172 IHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATI 225 (343) Q Consensus 172 tHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~ 225 (343) ..++=.-+-+.++++.+.+-.. +.+.. |.|| |||||.+ T Consensus 150 ~~L~~~~lGr~l~~~~~~~L~~-----l~~~~----------gidp-~GE~GEf 187 (227) T 2d13_A 150 YGLNESWLGRELNYKNLEELKK-----LSEKY----------GIHI-AGEGGEF 187 (227) T ss_dssp TTCCGGGTTCBCCHHHHHHHHH-----HHHHH----------CCCT-TCGGGTE T ss_pred CCCCHHHCCCCCCHHHHHHHHH-----HHHHC----------CCCC-CCCCCEE T ss_conf 8999689177334978999999-----99874----------9776-6777427 No 48 >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Probab=35.60 E-value=22 Score=15.44 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=29.8 Q ss_pred CCCCC-CEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEE-CCHHHHHHHHHHCC Q ss_conf 98888-38997189877478999998428523248989999-39999999999818 Q gi|254780397|r 1 MDEFL-PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYI-GDVDVLNARAKQLN 54 (343) Q Consensus 1 M~k~~-pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~vii-gd~~~l~~~~k~l~ 54 (343) |++++ |+++..|=-.|||-+|..+.... .++.++. -+.+.++...+.++ T Consensus 1 M~kL~GKvalITG~s~GIG~aia~~la~~-----Ga~V~i~~r~~~~l~~~~~~~~ 51 (263) T 2a4k_A 1 MGRLSGKTILVTGAASGIGRAALDLFARE-----GASLVAVDREERLLAEAVAALE 51 (263) T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHTCC T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHCC T ss_conf 98879988999488868999999999987-----9989999798899999999738 No 49 >1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1 Probab=34.32 E-value=23 Score=15.32 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=45.2 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 7899998342358866521123322112665304531333432010245678889899999853134 Q gi|254780397|r 139 TEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGI 205 (343) Q Consensus 139 TE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi 205 (343) ++.+.++...+.+....++|++-=++=+...+.|.+||.|+-.. +--.+-+.+--+....|+.||. T Consensus 66 ~d~~~~lL~~N~FSL~~P~~~~Gld~~kn~VlhtR~pL~el~~~-~~~~~FE~~i~~a~~i~~~f~~ 131 (132) T 1s28_A 66 SNACQSLLRLNEFNLRTPFFTVGLNEKKDGVVHTRIPLLNLDNV-EMRRVFEALLNLSGEVKKTFGF 131 (132) T ss_dssp HHHHHHHHTTTCCCCCSSCCEEEECTTSEEEEEEEEECTTCCHH-HHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCHHHCCCH-HHHHHHHHHHHHHHHHHHHCCC T ss_conf 78999999815655468669987558764589831575661418-8999999998777778775066 No 50 >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans} Probab=33.77 E-value=23 Score=15.26 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=26.7 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH----CCCCCCHHHHHHHH Q ss_conf 002467788776643012343044322344777641----01325647899998 Q gi|254780397|r 96 ASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQE----KFKFPGHTEFLAEL 145 (343) Q Consensus 96 g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~a----G~~f~GhTE~La~~ 145 (343) .....+.+..+.+ ..+-+.++++||.- +..+ |.++++|..+..++ T Consensus 94 ~~~l~~~l~~~~~--~~k~i~aiC~G~~~---La~aGlL~gr~~T~~~~~~~~l 142 (190) T 2vrn_A 94 EEGAMKFVRDMYD--AGKPIAAICHGPWS---LSETGIAQGLKMTSWSSLKREL 142 (190) T ss_dssp CHHHHHHHHHHHH--TTCCEEEC-CTTHH---HHHTTTTTTCEECCCGGGHHHH T ss_pred CHHHHHHHHHHHH--CCCCCCCCCHHHHH---HHHCCCCCCCEEEECCCHHHHH T ss_conf 8899999999875--27740033428999---9977987798598474289999 No 51 >1dpt_A D-dopachrome tautomerase; cytokine, growth factor; 1.54A {Homo sapiens} SCOP: d.80.1.3 Probab=32.34 E-value=24 Score=15.12 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=54.0 Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCC-----HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 5647899998342358866521123322112665304531-----33343201024567888989999985313456707 Q gi|254780397|r 136 PGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIP-----IADICRILSTKRIIETSDTVYNAMKKYFGINNPRI 210 (343) Q Consensus 136 ~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiP-----Lk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkI 210 (343) ..-++.+++..++. +..+|.....+-+..+-.++-| |+.+-...+.+.-.+-...+.+.+.+.+||+.=|| T Consensus 20 ~~ls~~la~~lgKp----e~~vmV~v~~~~~m~fgGs~eP~a~~~l~sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~Ri 95 (117) T 1dpt_A 20 KRLCAAAASILGKP----ADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRI 95 (117) T ss_dssp HHHHHHHHHHHCSC----GGGCEEEEECSCCCCBTTBCSSCEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGE T ss_pred HHHHHHHHHHHCCC----HHHEEEEEECCEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE T ss_conf 99999999987979----79989998421479975999978999999955868666779999999999998709796759 Q ss_pred EEEEE--CCC-CCCCC Q ss_conf 99963--665-44531 Q gi|254780397|r 211 AISGL--NPH-AGENA 223 (343) Q Consensus 211 aV~gL--NPH-AGE~G 223 (343) -+.=- +|| -|=|| T Consensus 96 yI~f~~~~~~~~G~nG 111 (117) T 1dpt_A 96 LIRFFPLESWQIGKIG 111 (117) T ss_dssp EEEEEEECGGGCEETT T ss_pred EEEEEECCHHHCCCCC T ss_conf 9999978999930687 No 52 >2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12} Probab=32.03 E-value=25 Score=15.09 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=36.8 Q ss_pred EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEEC Q ss_conf 07999636654453100001210244588864215876434555112100022366768999851 Q gi|254780397|r 209 RIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYH 273 (343) Q Consensus 209 kIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYH 273 (343) .+.=+|+-|+-|+. .=.-|++.+++.|++++|=.|-. +......++|.||+|=. T Consensus 51 ~v~SAG~~~~~G~~---------~~~~a~~vL~e~Gid~s~h~s~~--l~~~~~~~aDlIl~M~~ 104 (167) T 2fek_A 51 KVESAGLGALVGKG---------ADPTAISVAAEHQLSLEGHCARQ--ISRRLCRNYDLILTMEK 104 (167) T ss_dssp EEEEEETTCCTTCC---------CCHHHHHHHHHTTCCCTTCCCCB--CCHHHHHHSSEEEESCH T ss_pred EEEEEECCCCCCCC---------CCHHHHHHHHHCCCCCCCCCCCC--CCHHHHCCCCEEEEECH T ss_conf 48850413678998---------88269999998399853344565--82877156999999588 No 53 >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Probab=29.95 E-value=24 Score=15.12 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=20.4 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCC Q ss_conf 9888838997189877478999998428 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWAS 28 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~ 28 (343) |++|++|+||=| -.=||..++-..+.. T Consensus 1 m~~~k~ILITG~-tGfiG~~l~~~Ll~~ 27 (348) T 1oc2_A 1 MSQFKNIIVTGG-AGFIGSNFVHYVYNN 27 (348) T ss_dssp --CCSEEEEETT-TSHHHHHHHHHHHHH T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHC T ss_conf 999988999478-868999999999977 No 54 >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen synthase two rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Probab=29.13 E-value=28 Score=14.79 Aligned_cols=110 Identities=16% Similarity=0.092 Sum_probs=57.0 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECC--HHHHHHHHH Q ss_conf 567079996366544531000012102445888642158764345551121000223667689998512--022555541 Q gi|254780397|r 206 NNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHD--QALIPIKTL 283 (343) Q Consensus 206 ~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHD--Qglip~K~l 283 (343) ++-++.+.|- |.++.+...-.+.+....-+.+.|+.+.+.+ ...+...|++|.-++. +++..+.++ T Consensus 69 ~~~~l~ivG~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~adi~v~ps~~E~~~~~~~EAm 136 (200) T 2bfw_A 69 QEMRFIIIGK----------GDPELEGWARSLEEKHGNVKVITEMLSREFV--RELYGSVDFVIIPSYFEPFGLVALEAM 136 (200) T ss_dssp GGEEEEEECC----------BCHHHHHHHHHHHHHCTTEEEECSCCCHHHH--HHHHTTCSEEEECCSCCSSCHHHHHHH T ss_pred CCEEEEEEEC----------CCHHHHHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHCCCCCEECCCCCCCCHHHHHHH T ss_conf 9869999836----------9789999999999868993899830798999--998750476240567678986899999 Q ss_pred CCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 447727999208764755887552221336866838999999999999 Q gi|254780397|r 284 DFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 284 ~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) +.+.-| ++--.+-.+--++|++++=.- --|+.+|.+++.-+.++ T Consensus 137 a~G~pv-i~~~~~g~~e~i~~~~g~l~~---~~~~~~la~~i~~~l~~ 180 (200) T 2bfw_A 137 CLGAIP-IASAVGGLRDIITNETGILVK---AGDPGELANAILKALEL 180 (200) T ss_dssp HTTCEE-EEESCHHHHHHCCTTTCEEEC---TTCHHHHHHHHHHHHHC T ss_pred HCCCCE-EEECCCCCCEEEECCCEEEEC---CCCHHHHHHHHHHHHHC T ss_conf 889849-996499871478588579977---99999999999999957 No 55 >1zgg_A Putative low molecular weight protein-tyrosine- phosphatase YWLE; alpha/beta, four-stranded parallel beta sheet, structural genomics; NMR {Bacillus subtilis} Probab=29.03 E-value=17 Score=15.99 Aligned_cols=78 Identities=13% Similarity=0.233 Sum_probs=42.3 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHE Q ss_conf 34320102456788898999998531345670799963665445310000121024458886421587643455511210 Q gi|254780397|r 178 DICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMF 257 (343) Q Consensus 178 ~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F 257 (343) .++++--.+.|.+.. +.+ -|. .-.+.=+|+-++-| ...--.|++.+++.|+++.+- +. - + T Consensus 10 N~cRSpmAE~i~~~~------~~~-~g~-~~~v~SAG~~~~~~---------~~~~p~a~~~l~~~gi~~~h~-~~-~-l 69 (150) T 1zgg_A 10 NTCRSPMAEALFKSI------AER-EGL-NVNVRSAGVFASPN---------GKATPHAVEALFEKHIALNHV-SS-P-L 69 (150) T ss_dssp STTTHHHHHHHHHHH------HHH-HTC-CCEEEEEBTTCCTT---------CBCCTTHHHHHHHTTSCCCCB-CC-B-C T ss_pred CHHHHHHHHHHHHHH------HHH-CCC-CEEEEECCCCCCCC---------CCCCHHHHHHHHHCCCCCCCC-CC-C-C T ss_conf 548999999999999------997-699-72787544202478---------878879999999709872234-32-1-2 Q ss_pred ECCCCCCCCEEEEEECCH Q ss_conf 002236676899985120 Q gi|254780397|r 258 HHSARQCYDVAICMYHDQ 275 (343) Q Consensus 258 ~~~~~~~~D~vlamYHDQ 275 (343) ......++|.||+|-..| T Consensus 70 ~~~~~~~~DlIl~m~~~~ 87 (150) T 1zgg_A 70 TEELMESADLVLAMTHQH 87 (150) T ss_dssp CHHHHHHCSEEEESSHHH T ss_pred HHHHHHCCCEEHHCCHHH T ss_conf 186611058805415769 No 56 >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Probab=27.71 E-value=29 Score=14.64 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=17.0 Q ss_pred CCCCCCEEEECCCCCC-CCHHHHHHHHC Q ss_conf 9888838997189877-47899999842 Q gi|254780397|r 1 MDEFLPLILTQGDPAG-IGPDISLKAWA 27 (343) Q Consensus 1 M~k~~pI~IT~GDPaG-IGpEIilKal~ 27 (343) |+ |++|+|| | +| ||-.++-.+.. T Consensus 1 M~-m~kiLIt-G--aG~iG~~l~~~L~~ 24 (286) T 3gpi_A 1 MS-LSKILIA-G--CGDLGLELARRLTA 24 (286) T ss_dssp -C-CCCEEEE-C--CSHHHHHHHHHHHH T ss_pred CC-CCEEEEE-C--CCHHHHHHHHHHHH T ss_conf 99-7879998-9--45999999999997 No 57 >3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* Probab=26.77 E-value=25 Score=15.08 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHCCCCCEEEECH Q ss_conf 467788776643012343044322 Q gi|254780397|r 99 TIANIEKAVSLTLSGQALAIVTNP 122 (343) Q Consensus 99 ~~~sl~~A~~l~~~g~~~alVT~P 122 (343) ..+++...++..++ ++|.+|-.- T Consensus 171 ~v~~~~~~v~~lk~-~~D~II~L~ 193 (509) T 3ive_A 171 EIKWLQRYIDELKG-KVDLTVALI 193 (509) T ss_dssp HHHHHHHHHHHHTT-TCSEEEEEE T ss_pred HHHHHHHHHHHHHC-CCCEEEEEE T ss_conf 99999999886333-587899975 No 58 >2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli} Probab=26.41 E-value=31 Score=14.50 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=38.4 Q ss_pred EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCH Q ss_conf 0799963665445310000121024458886421587643455511210002236676899985120 Q gi|254780397|r 209 RIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQ 275 (343) Q Consensus 209 kIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQ 275 (343) .|--+|+-++.|+.- =..|++.+++.|+++.+=.|- -+......+||.||+|=..| T Consensus 55 ~v~SaG~~~~~g~~~---------~~~a~~vl~~~Gid~~~h~sr--~lt~~~~~~aDlIl~Md~~~ 110 (168) T 2wja_A 55 KINSAGVGALVDHAA---------DESAIRVAEKNGLCLKGHRGT--KFTSALARQYDLLLVMEYSH 110 (168) T ss_dssp EEEEEETTCCTTCCC---------CHHHHHC---CCCCCTTCCCC--BCCHHHHTTCSEEEESSHHH T ss_pred CEEEEEEECCCCCCC---------CHHHHHHHHHHCCCCHHHHHC--CCCHHCCCCCCEEEECCHHH T ss_conf 658668743689988---------817899999848872056521--34231047789999859889 No 59 >3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A Probab=25.57 E-value=18 Score=15.93 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=24.5 Q ss_pred EEEEE-CCCCCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 99963-6654453100001210244588864215 Q gi|254780397|r 211 AISGL-NPHAGENATIGIEEKNIIIPAITYLRND 243 (343) Q Consensus 211 aV~gL-NPHAGE~G~~G~EE~~iI~PaI~~~~~~ 243 (343) +|-|. =|+||| +.++.||.+...-|+..++++ T Consensus 33 ~v~g~~C~~CGE-~i~~~~~~~~~~~a~~af~~~ 65 (78) T 3ga8_A 33 GIHGLYCVHCEE-SIMNKEESDAFMAQVKAFRAS 65 (78) T ss_dssp EEEEEEETTTCC-EECCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCC-EEECHHHHHHHHHHHHHHHHH T ss_conf 757552799987-774799999999999999998 No 60 >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Probab=25.13 E-value=27 Score=14.85 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=26.4 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCH Q ss_conf 9888838997189877478999998428523248989999399 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDV 43 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~ 43 (343) |+++.+++|- | ..-||-|++.|.+.... ...++.+.+. T Consensus 1 MtkkikVaIi-G-tG~iG~eLl~~lL~~hp---~~ei~av~s~ 38 (312) T 1nvm_B 1 MNQKLKVAII-G-SGNIGTDLMIKVLRNAK---YLEMGAMVGI 38 (312) T ss_dssp CCSCEEEEEE-C-CSHHHHHHHHHHHHHCS---SEEEEEEECS T ss_pred CCCCCEEEEE-C-CCHHHHHHHHHHHHCCC---CCEEEEEEEC T ss_conf 9988769998-6-86999999999984599---8689999946 No 61 >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Probab=24.82 E-value=33 Score=14.32 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=49.1 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHH Q ss_conf 3201024567888989999985313456707999636--6544531000012102445888642158764--34555112 Q gi|254780397|r 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLN--PHAGENATIGIEEKNIIIPAITYLRNDNKNI--IGPLPADS 255 (343) Q Consensus 180 ~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLN--PHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v--~GP~paDt 255 (343) ...++.......++.+.+.+.+ ..+..+|+|+||- |-..+ -...-....++.++++|.+| .-|+..+. T Consensus 293 ~~~~N~~~~~~~~~~i~~~l~~--~~~~~~I~IlGlayKp~t~d------~R~Sps~~l~~~L~~~g~~V~~yDP~v~~~ 364 (450) T 3gg2_A 293 VERVNEKQKSILFDKFSTYYKG--NVQGRCVAIWGLSFKPGTDD------MREAPSLVLIEKLLEVGCRVRVYDPVAMKE 364 (450) T ss_dssp HHHHHHHHTTHHHHHHHHHTTT--CCTTCEEEEECCSSSTTCCC------CTTCHHHHHHHHHHHTTCEEEEECSSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH--CCCCCCEEEECCCCCCCCHH------HCCCHHHHHHHHHHHCCCCEEEECCCCCHH T ss_conf 3667899999999999998502--02588200232424897311------125417999999998699589989978878 Q ss_pred HE---------ECC---CCCCCCEEEEE-ECCHHHHHHHHHCCC Q ss_conf 10---------002---23667689998-512022555541447 Q gi|254780397|r 256 MF---------HHS---ARQCYDVAICM-YHDQALIPIKTLDFN 286 (343) Q Consensus 256 ~F---------~~~---~~~~~D~vlam-YHDQglip~K~l~f~ 286 (343) .+ ... ..+++|+++=| -|+| ||.++|. T Consensus 365 ~~~~~~~~~~~~~~~~ea~~~aD~iii~t~h~~----f~~~d~~ 404 (450) T 3gg2_A 365 AQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKE----FRMPDWS 404 (450) T ss_dssp HHHHHGGGSEECSSHHHHTTTCSCEEECSCCGG----GSSCCHH T ss_pred HHHHHCCCEEEECCHHHHHCCCCEEEEECCCHH----HCCCCHH T ss_conf 999727880773899999706988999039857----5506999 No 62 >2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A Probab=24.42 E-value=26 Score=14.91 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 88898999998531345670799963665445310000121024458886421587643 Q gi|254780397|r 190 ETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII 248 (343) Q Consensus 190 ~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~ 248 (343) +.+--+...+.+.+|+. .|+||--.++.+ |-..|.++|++.-++-+..+ T Consensus 15 Env~Ktq~~~skILgi~-------slsp~v~~n~~f---ey~~mv~~Ire~~~e~i~~F 63 (70) T 2g7o_A 15 ECVVKTQSSVAKILGIE-------SLSPHVSGNSKF---EYANMVEDIREKVSSEMERF 63 (70) T ss_dssp HHHHHHHHHHHHHHHHH-------HTCGGGTTCGGG---CHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH-------HCCHHHCCCCCC---CHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999997320-------136644478754---09999999999999999984 No 63 >1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1 Probab=23.42 E-value=35 Score=14.16 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=38.6 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE---- Q ss_conf 4789999834235886652112332211266530453133343201024567888989999985313456707999---- Q gi|254780397|r 138 HTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS---- 213 (343) Q Consensus 138 hTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~---- 213 (343) --|||.+.+..- +.+ ....--..++.+|..-|..--+ .|-++ -+.|+.+.+.|.+.|++++|+|-|- T Consensus 12 Ire~l~k~l~~A-Gis-~IeIeR~~~~i~I~I~tarPG~-----vIGrk--G~~I~~L~~~L~k~~~~~~~~i~l~ae~I 82 (92) T 1wh9_A 12 LNEFLTRELAED-GYS-GVEVRVTPTRTEIIILATRTQN-----VLGEK--GRRIRELTAVVQKRFGFPEGSVELYAEKV 82 (92) T ss_dssp HHHHHHHHTTTT-TEE-EEEEEECSSCEEEEEEESCHHH-----HHCGG--GHHHHHHHHHHHHHHCCCTTSEEEEEEEC T ss_pred HHHHHHHHHHHC-CCC-EEEEEECCCCEEEEEEECCCCC-----EECCC--CHHHHHHHHHHHHHHCCCCCCEEEEEHHH T ss_conf 999999988768-736-5999987991799999789762-----42347--55399999999999789998289985154 Q ss_pred ---EECCCCC Q ss_conf ---6366544 Q gi|254780397|r 214 ---GLNPHAG 220 (343) Q Consensus 214 ---gLNPHAG 220 (343) ||+|-+| T Consensus 83 a~r~l~p~~~ 92 (92) T 1wh9_A 83 ATRGSGPSSG 92 (92) T ss_dssp CCSCCCSCCC T ss_pred HHCCCCCCCC T ss_conf 3257885469 No 64 >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Probab=23.39 E-value=35 Score=14.15 Aligned_cols=99 Identities=9% Similarity=0.063 Sum_probs=52.7 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHH Q ss_conf 432010245678889899999853-134567079996366544531000012102445888642158764--34555112 Q gi|254780397|r 179 ICRILSTKRIIETSDTVYNAMKKY-FGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI--IGPLPADS 255 (343) Q Consensus 179 V~~~it~~~I~~ki~~~~~~l~~~-~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v--~GP~paDt 255 (343) .++.++........+.+.+.+.+. -.+..++|+|+||-=-.+ . .+-..---...++.|+++|.+| .-|+-.+. T Consensus 324 ~~r~iN~~~~~~i~~~~~~~~~~~~~~~~~~~I~ilGlafK~~---t-~d~R~Sps~~l~~~L~~~g~~V~iyDP~v~~~ 399 (478) T 3g79_A 324 LARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKD---S-DDARNTPSEPYRDLCLKAGASVMVHDPYVVNY 399 (478) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTT---C-SCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC---C-CCHHCCCHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 1111133442223699999999837875786678986314799---9-74101859999999996889899989965677 Q ss_pred HEE------CCCCCCCCEEEEE-ECCHHHHHHHHHCC Q ss_conf 100------0223667689998-51202255554144 Q gi|254780397|r 256 MFH------HSARQCYDVAICM-YHDQALIPIKTLDF 285 (343) Q Consensus 256 ~F~------~~~~~~~D~vlam-YHDQglip~K~l~f 285 (343) .-. ....+++|++|-| -|+| ||.+.+ T Consensus 400 ~~~~~~~~l~~~~~~aD~ivi~t~h~~----f~~l~~ 432 (478) T 3g79_A 400 PGVEISDNLEEVVRNADAIVVLAGHSA----YSSLKA 432 (478) T ss_dssp TTBCEESCHHHHHTTCSEEEECSCCHH----HHSCCH T ss_pred CCCEECCCHHHHHHCCCEEEEECCCHH----HHCCCH T ss_conf 897562899999837988999669867----751797 No 65 >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Probab=23.23 E-value=33 Score=14.32 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=52.3 Q ss_pred CCCCCCCCCCHHHEECCCCCCCCEEE--EEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH Q ss_conf 87643455511210002236676899--9851202255554144772799920876475588755222133686683899 Q gi|254780397|r 244 NKNIIGPLPADSMFHHSARQCYDVAI--CMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343) Q Consensus 244 g~~v~GP~paDt~F~~~~~~~~D~vl--amYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343) .+...|.+|.+-+. ..+...|++| +.|--.|++++-+++.+.-| ||-..+......+|+.++=+. ..|+.++ T Consensus 296 ~v~~lG~v~~~el~--~l~~~adi~v~pS~~E~fgl~~lEAma~G~PV-V~s~~~~~~~~~~~~~g~l~~---~~d~~~l 369 (413) T 2x0d_A 296 HLNSLGKLTLEDYA--DLLKRSSIGISLMISPHPSYPPLEMAHFGLRV-ITNKYENKDLSNWHSNIVSLE---QLNPENI 369 (413) T ss_dssp EEEEEESCCHHHHH--HHHHHCCEEECCCSSSSCCSHHHHHHHTTCEE-EEECBTTBCGGGTBTTEEEES---SCSHHHH T ss_pred CEEECCCCCHHHHH--HHHHHCCEEEEECCCCCCCHHHHHHHHCCCCE-EEECCCCCCEEEECCCEEEEC---CCCHHHH T ss_conf 17874887989999--99986789998135678866999999869829-995899820035689479989---9999999 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9999999999985200 Q gi|254780397|r 322 VSALKIAAQLGYQKNL 337 (343) Q Consensus 322 ~~ai~~a~~~~~~~~~ 337 (343) -++|.-.++...++.+ T Consensus 370 a~~i~~l~~~~~~~~~ 385 (413) T 2x0d_A 370 AETLVELCMSFNNRDV 385 (413) T ss_dssp HHHHHHHHHHTC---- T ss_pred HHHHHHHHCCCCCHHH T ss_conf 9999999839866999 No 66 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=22.24 E-value=20 Score=15.68 Aligned_cols=21 Identities=29% Similarity=0.142 Sum_probs=14.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 683899999999999998520 Q gi|254780397|r 316 TQEESLVSALKIAAQLGYQKN 336 (343) Q Consensus 316 a~~~s~~~ai~~a~~~~~~~~ 336 (343) |.-.++.+|...|.+...+=+ T Consensus 413 a~g~tl~eA~~~ay~~~~~I~ 433 (452) T 2qk4_A 413 AIRENLISALEEAKKGLAAIK 433 (452) T ss_dssp EEESSHHHHHHHHHHHHHHCB T ss_pred EECCCHHHHHHHHHHHHHCCC T ss_conf 987999999999999985478 No 67 >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Probab=21.14 E-value=39 Score=13.88 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=20.6 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCC Q ss_conf 9888838997189877478999998428 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWAS 28 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~ 28 (343) |++++||+||= =-.-||..++-.++.. T Consensus 1 m~~k~KILVtG-atG~iG~~l~~~L~~~ 27 (313) T 1qyd_A 1 MDKKSRVLIVG-GTGYIGKRIVNASISL 27 (313) T ss_dssp -CCCCCEEEES-TTSTTHHHHHHHHHHT T ss_pred CCCCCEEEEEC-CCCHHHHHHHHHHHHC T ss_conf 98999899989-9848999999999978 No 68 >2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus} Probab=20.95 E-value=40 Score=13.85 Aligned_cols=78 Identities=24% Similarity=0.172 Sum_probs=45.0 Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH----HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 6478999983423588665211233221126653045313334----320102456788898999998531345670799 Q gi|254780397|r 137 GHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADI----CRILSTKRIIETSDTVYNAMKKYFGINNPRIAI 212 (343) Q Consensus 137 GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V----~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV 212 (343) .-|+.+++..++. .+.+|.....+.+..+.-+.-|..-+ ...++.+.-.+-...+.+.+.+.+|+..-||-| T Consensus 22 ~~s~~~a~~lgKp----~~~i~V~v~~~~~m~~ggs~~p~a~~~v~sig~~~~e~n~~~~~~i~~~l~~~Lgi~~~riyi 97 (115) T 2xcz_A 22 ELSSKLAELLGKP----EKYVMTSLQCGVPMTFSGNTEPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYI 97 (115) T ss_dssp HHHHHHHHHHTCC----GGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEE T ss_pred HHHHHHHHHHCCC----HHHEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 9999999987969----899999984598458717899369999999748890568999999999999984959576999 Q ss_pred E--EECCC Q ss_conf 9--63665 Q gi|254780397|r 213 S--GLNPH 218 (343) Q Consensus 213 ~--gLNPH 218 (343) . -+.|| T Consensus 98 ~f~~~~~~ 105 (115) T 2xcz_A 98 GFEDVPAR 105 (115) T ss_dssp EEEECCGG T ss_pred EEEECCHH T ss_conf 99988899 No 69 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=20.70 E-value=35 Score=14.20 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=8.1 Q ss_pred HHHHHHHHHCCCCCEEE Q ss_conf 88776643012343044 Q gi|254780397|r 103 IEKAVSLTLSGQALAIV 119 (343) Q Consensus 103 l~~A~~l~~~g~~~alV 119 (343) .+.|.+.+.....|.++ T Consensus 51 g~~al~~l~~~~~Dlvi 67 (137) T 2pln_A 51 LEDGEYLMDIRNYDLVM 67 (137) T ss_dssp HHHHHHHHHHSCCSEEE T ss_pred HHHHHHHHHCCCCCEEE T ss_conf 99999999728999999 Done!