Query         gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 343
No_of_seqs    216 out of 2390
Neff          6.9 
Searched_HMMs 23785
Date          Mon May 30 10:25:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780397.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3lxy_A 4-hydroxythreonine-4-ph 100.0       0       0  877.3  27.6  327    2-336     6-333 (334)
  2 1yxo_A 4-hydroxythreonine-4-ph 100.0       0       0  869.5  27.2  325    1-335     1-327 (328)
  3 2hi1_A 4-hydroxythreonine-4-ph 100.0       0       0  862.0  25.8  324    1-332     4-330 (330)
  4 1td9_A Phosphate acetyltransfe  99.0   9E-09 3.8E-13   71.8  14.3  286    3-330    21-326 (329)
  5 1vmi_A Putative phosphate acet  99.0 4.7E-09   2E-13   73.5  12.4  287    5-334    27-337 (355)
  6 2af4_C Phosphate acetyltransfe  99.0 1.8E-08 7.8E-13   69.9  14.1  290    5-336    17-332 (333)
  7 1r5j_A Putative phosphotransac  98.8 9.6E-08   4E-12   65.6  13.3  288    3-334    23-334 (337)
  8 1u7n_A Fatty acid/phospholipid  98.3 2.9E-05 1.2E-09   50.7  13.0  269    3-335     2-322 (336)
  9 1vi1_A Fatty acid/phospholipid  98.2 2.8E-05 1.2E-09   50.8  11.0  271    1-335     1-319 (345)
 10 1yco_A Branched-chain phosphot  98.1 0.00045 1.9E-08   43.5  17.2  203  101-335    56-276 (279)
 11 2e0c_A 409AA long hypothetical  97.8 3.6E-05 1.5E-09   50.1   6.0   84  245-331   266-357 (409)
 12 1hqs_A Isocitrate dehydrogenas  97.6 5.8E-05 2.4E-09   48.9   4.5   79  253-331   286-372 (423)
 13 3blx_B Isocitrate dehydrogenas  97.4 0.00024 9.9E-09   45.2   5.3  136  181-331   158-308 (354)
 14 1vlc_A 3-isopropylmalate dehyd  97.3 0.00021 8.8E-09   45.6   4.9  136  181-331   169-313 (366)
 15 3blx_A Isocitrate dehydrogenas  97.3 0.00035 1.5E-08   44.2   5.6  138  181-331   152-301 (349)
 16 1wpw_A 3-isopropylmalate dehyd  97.2 0.00056 2.4E-08   43.0   5.7  137  182-332   140-284 (336)
 17 2d1c_A Isocitrate dehydrogenas  97.2 0.00041 1.7E-08   43.8   4.9  138  181-331   160-307 (496)
 18 1a05_A IPMDH, IMDH, 3-isopropy  97.2 0.00045 1.9E-08   43.6   5.1  135  182-331   161-305 (358)
 19 1x0l_A Homoisocitrate dehydrog  97.1 0.00055 2.3E-08   43.0   5.1  138  181-331   139-286 (333)
 20 1v53_A 3-isopropylmalate dehyd  97.1 0.00066 2.8E-08   42.5   5.0  137  182-331   161-306 (366)
 21 1cnz_A IPMDH, IMDH, protein (3  97.0 0.00086 3.6E-08   41.9   5.3  137  181-331   165-311 (363)
 22 1g2u_A IPMDH, 3-isopropylmalat  96.9 0.00086 3.6E-08   41.9   4.7  137  181-331   155-300 (345)
 23 2d4v_A Isocitrate dehydrogenas  96.9  0.0014 5.7E-08   40.7   5.4   78  252-331   294-379 (429)
 24 3flk_A Tartrate dehydrogenase/  96.8 0.00059 2.5E-08   42.8   3.1  141  181-332   161-312 (364)
 25 1w0d_A 3-isopropylmalate dehyd  96.8 0.00071   3E-08   42.4   3.3  140  181-331   149-298 (337)
 26 2iv0_A Isocitrate dehydrogenas  96.8  0.0017 7.1E-08   40.1   5.1   77  253-331   276-360 (412)
 27 1tyo_A Isocitrate dehydrogenas  96.7 0.00086 3.6E-08   41.9   3.3  145  180-329   201-368 (435)
 28 3dms_A Isocitrate dehydrogenas  96.7   0.001 4.2E-08   41.5   3.3   67  263-331   304-376 (427)
 29 1lwd_A Isocitrate dehydrogenas  95.7  0.0023 9.7E-08   39.3   0.9  146  182-333   183-344 (413)
 30 2qfy_A Isocitrate dehydrogenas  95.2  0.0062 2.6E-07   36.7   1.7   69  264-332   279-359 (427)
 31 2uxq_A Isocitrate dehydrogenas  94.5    0.02 8.5E-07   33.6   2.9   69  263-332   259-339 (402)
 32 1zor_A Isocitrate dehydrogenas  91.8    0.12 5.1E-06   29.0   3.5   78  255-333   249-338 (399)
 33 2e0c_A 409AA long hypothetical  87.6    0.29 1.2E-05   26.7   2.7   19    3-23     23-41  (409)
 34 1cnz_A IPMDH, IMDH, protein (3  84.6    0.36 1.5E-05   26.1   1.9   22    1-24      1-22  (363)
 35 1a05_A IPMDH, IMDH, 3-isopropy  84.5    0.37 1.5E-05   26.1   1.9   20    4-25      1-20  (358)
 36 1w0d_A 3-isopropylmalate dehyd  83.4    0.44 1.8E-05   25.6   1.9  122    4-130     1-184 (337)
 37 2bon_A Lipid kinase; DAG kinas  76.4     1.6 6.7E-05   22.2   3.0   24  190-213   185-208 (332)
 38 2qv7_A Diacylglycerol kinase D  74.7     2.6 0.00011   21.0   3.6   21  103-123   130-150 (337)
 39 1s2d_A Purine trans deoxyribos  59.9       2 8.4E-05   21.6   0.6   10  263-272    80-89  (167)
 40 2i0f_A 6,7-dimethyl-8-ribityll  59.7     5.3 0.00022   19.1   2.7  124  203-338     8-155 (157)
 41 3iyk_A VP5; icosahedral virus;  46.0      15 0.00062   16.4   3.9   75  243-333   362-437 (526)
 42 3cg4_A Response regulator rece  44.9      11 0.00048   17.1   2.5   15  183-197   112-126 (142)
 43 1ys7_A Transcriptional regulat  38.9      18 0.00075   16.0   2.7   20  112-131    99-118 (233)
 44 3dhn_A NAD-dependent epimerase  36.9      13 0.00056   16.7   1.8   27    1-28      1-27  (227)
 45 3nhm_A Response regulator; pro  36.5      14 0.00059   16.5   1.9   16  115-130    99-114 (133)
 46 1c41_A Lumazine synthase; ribo  36.2     9.4 0.00039   17.6   0.9  151  162-339    13-195 (200)
 47 2d13_A Hypothetical protein PH  36.0      21 0.00089   15.5   6.6   90  107-225    83-187 (227)
 48 2a4k_A 3-oxoacyl-[acyl carrier  35.6      22 0.00091   15.4   7.7   49    1-54      1-51  (263)
 49 1s28_A ORF1; type III chaperon  34.3      23 0.00095   15.3   4.9   66  139-205    66-131 (132)
 50 2vrn_A Protease I, DR1199; cys  33.8      23 0.00097   15.3   2.8   45   96-145    94-142 (190)
 51 1dpt_A D-dopachrome tautomeras  32.3      24   0.001   15.1   5.2   84  136-223    20-111 (117)
 52 2fek_A Low molecular weight pr  32.0      25   0.001   15.1   4.8   54  209-273    51-104 (167)
 53 1oc2_A DTDP-glucose 4,6-dehydr  29.9      24   0.001   15.1   2.2   27    1-28      1-27  (348)
 54 2bfw_A GLGA glycogen synthase;  29.1      28  0.0012   14.8   4.4  110  206-331    69-180 (200)
 55 1zgg_A Putative low molecular   29.0      17 0.00074   16.0   1.4   78  178-275    10-87  (150)
 56 3gpi_A NAD-dependent epimerase  27.7      29  0.0012   14.6   2.4   23    1-27      1-24  (286)
 57 3ive_A Nucleotidase; structura  26.8      25   0.001   15.1   1.8   23   99-122   171-193 (509)
 58 2wja_A Putative acid phosphata  26.4      31  0.0013   14.5   5.1   56  209-275    55-110 (168)
 59 3ga8_A HTH-type transcriptiona  25.6      18 0.00075   15.9   0.9   32  211-243    33-65  (78)
 60 1nvm_B Acetaldehyde dehydrogen  25.1      27  0.0011   14.8   1.8   38    1-43      1-38  (312)
 61 3gg2_A Sugar dehydrogenase, UD  24.8      33  0.0014   14.3   4.6   95  180-286   293-404 (450)
 62 2g7o_A Protein TRAM; four heli  24.4      26  0.0011   14.9   1.6   49  190-248    15-63  (70)
 63 1wh9_A 40S ribosomal protein S  23.4      35  0.0015   14.2   3.6   74  138-220    12-92  (92)
 64 3g79_A NDP-N-acetyl-D-galactos  23.4      35  0.0015   14.2   7.6   99  179-285   324-432 (478)
 65 2x0d_A WSAF; GT4 family, trans  23.2      33  0.0014   14.3   1.9   88  244-337   296-385 (413)
 66 2qk4_A Trifunctional purine bi  22.2      20 0.00083   15.7   0.6   21  316-336   413-433 (452)
 67 1qyd_A Pinoresinol-lariciresin  21.1      39  0.0017   13.9   2.8   27    1-28      1-27  (313)
 68 2xcz_A Possible ATLS1-like lig  20.9      40  0.0017   13.9   4.2   78  137-218    22-105 (115)
 69 2pln_A HP1043, response regula  20.7      35  0.0015   14.2   1.6   17  103-119    51-67  (137)

No 1  
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=100.00  E-value=0  Score=877.29  Aligned_cols=327  Identities=35%  Similarity=0.574  Sum_probs=311.8

Q ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHC-CCCCCCEEEECC
Q ss_conf             8888389971898774789999984285232489899993999999999981899744753861011-126785376103
Q gi|254780397|r    2 DEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAV-SIFKKALPIISS   80 (343)
Q Consensus         2 ~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~-~~~~~~i~i~~~   80 (343)
                      ++++||+||+|||+||||||++|+|++.   ..++++++||+++++++++.+++++++..++..++. ....+.++++++
T Consensus         6 ~~~~rIaIT~GDPaGIGpEIilk~~~~~---~~~~~iiigd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~l~v~~~   82 (334)
T 3lxy_A            6 NHNNRLVITPGEPAGVGPDLAITLAQQD---WPVELVVCADPALLLARASQLNLPLQLREYQADQPAIAQQAGSLTILPV   82 (334)
T ss_dssp             CCCSEEEEECCCTTSSHHHHHHHHTTSC---CSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEEC
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHCC---CCCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCEEEECC
T ss_conf             6999589975887541799999997167---9998699989999999999759996178847851322146783354001


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             33220013553100000246778877664301234304432234477764101325647899998342358866521123
Q gi|254780397|r   81 PCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML  160 (343)
Q Consensus        81 ~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll  160 (343)
                      +...++.+|+++.++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+|||||||++++.+     +++|||
T Consensus        83 ~~~~~~~~G~~~~~~g~~~~~~l~~A~~~~~~g~~daiVT~PInK~~i~~aG~~f~GHTE~la~~~~~~-----~~~Mml  157 (334)
T 3lxy_A           83 KTAVNVVPGKLDVGNSHYVVETLAKACDGAISGEFAALVTGPVQKSIINDAGIPFIGHTEFFADRSHCQ-----RVVMML  157 (334)
T ss_dssp             CCSSCCCTTCCCGGGHHHHHHHHHHHHHHHHHTSSSCEEECCCCHHHHHHTTCCCSCHHHHHHHHHTCS-----CCEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCC-----CCHHHE
T ss_conf             235657889757323389999999999885324104899776125667643888587345653002788-----701103


Q ss_pred             CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             32211266530453133343201024567888989999985313456707999636654453100001210244588864
Q gi|254780397|r  161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL  240 (343)
Q Consensus       161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~  240 (343)
                      ++++|||+|+|+|||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||+++
T Consensus       158 ~~~~LrV~lvTtHIpLk~V~~~It~~~I~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~Pai~~~  237 (334)
T 3lxy_A          158 ATEELRVALATTHLPLLAVPGAITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTL  237 (334)
T ss_dssp             EETTEEEEESSCSCCGGGHHHHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEECSSGGGGGGGTTCSHHHHTHHHHHHHH
T ss_pred             EECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             21672799980675088876424177899999999999998449976648997038986323653057889899999999


Q ss_pred             HHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH
Q ss_conf             21587643455511210002236676899985120225555414477279992087647558875522213368668389
Q gi|254780397|r  241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES  320 (343)
Q Consensus       241 ~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s  320 (343)
                      |++|++++|||||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++|
T Consensus       238 ~~~gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~l~f~~~VnvtlGLp~iRtSpdHGTA~dIagkg~A~~~s  317 (334)
T 3lxy_A          238 RQQGINLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELAATGTADVGS  317 (334)
T ss_dssp             HHTTCCEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGTTTTCSCCHH
T ss_pred             HHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHH
T ss_conf             86499867884807886540015799999776465204342215776679973899568789987166661789899799


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999998520
Q gi|254780397|r  321 LVSALKIAAQLGYQKN  336 (343)
Q Consensus       321 ~~~ai~~a~~~~~~~~  336 (343)
                      |++||++|.+|++||+
T Consensus       318 ~~~Ai~~a~~~~~~r~  333 (334)
T 3lxy_A          318 FITALNLAIKMINNSN  333 (334)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999997437


No 2  
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa}
Probab=100.00  E-value=0  Score=869.48  Aligned_cols=325  Identities=37%  Similarity=0.587  Sum_probs=309.2

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHC--CCCCCCEEEE
Q ss_conf             98888389971898774789999984285232489899993999999999981899744753861011--1267853761
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAV--SIFKKALPII   78 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~--~~~~~~i~i~   78 (343)
                      |+  +||+||+|||+||||||++|+|++.+   ..++|+|||+++++++++.++++++++.++..+..  ......++++
T Consensus         1 M~--~kIaIT~GDPaGIGpEIilka~~~~~---~~~~vvig~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~l~v~   75 (328)
T 1yxo_A            1 MS--LRFALTPGEPAGIGPDLCLLLARSAQ---PHPLIAIASRTLLQERAGQLGLAIDLKDVSPAAWPERPAKAGQLYVW   75 (328)
T ss_dssp             CC--CCEEEECCSTTSSHHHHHHHHTTSCC---SSCEEEEECHHHHHHHHHHHTCCCEEEECBTTBCCSSCCCTTEEEEE
T ss_pred             CC--CEEEEECCCCCHHHHHHHHHHHHHCC---CCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCEEEEE
T ss_conf             99--60999889874468999999997179---99989998999999999984999851366813323302678856785


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             03332200135531000002467788776643012343044322344777641013256478999983423588665211
Q gi|254780397|r   79 SSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM  158 (343)
Q Consensus        79 ~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M  158 (343)
                      +.+...++++|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+||||||+++++.+     +++|
T Consensus        76 ~~~~~~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~la~~~~~~-----~~~M  150 (328)
T 1yxo_A           76 DTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGMITAPVHKGVINEAGIPFSGHTEFLADLTHTA-----QVVM  150 (328)
T ss_dssp             ECCCSSCCCTTCCCGGGHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCS-----CCEE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCEEHHHHHHHCCC-----CHHH
T ss_conf             36445677889749899999999999999999719754366078278999867998486659877650465-----3476


Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             23322112665304531333432010245678889899999853134567079996366544531000012102445888
Q gi|254780397|r  159 MLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT  238 (343)
Q Consensus       159 ll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~  238 (343)
                      ||++++|||+|+|+|||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||+
T Consensus       151 ml~~~~L~V~~~T~HipLk~V~~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~  230 (328)
T 1yxo_A          151 MLATRGLRVALATTHLPLREVADAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLE  230 (328)
T ss_dssp             EEEETTEEEEESSCSCCHHHHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHH
T ss_pred             HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHHHHH
T ss_conf             53125048999860587999998761778999999999999998088787524624799845528886156898999999


Q ss_pred             HHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCH
Q ss_conf             64215876434555112100022366768999851202255554144772799920876475588755222133686683
Q gi|254780397|r  239 YLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQE  318 (343)
Q Consensus       239 ~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~  318 (343)
                      +++++|++++|||||||+|.+..+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||+
T Consensus       231 ~l~~~gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~~~f~~~VnvtlGLp~irtS~dHGTa~diag~~~A~~  310 (328)
T 1yxo_A          231 RLRGEGLDLIGPLPADTLFTPKHLEHCDAVLAMYHDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDLAGSGRIDS  310 (328)
T ss_dssp             HHHTTTCEEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGGGTTTCCCCC
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHCCCCCCCH
T ss_conf             99876987789988378887500578758997021012314542156653799648996676799883365507898996


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999852
Q gi|254780397|r  319 ESLVSALKIAAQLGYQK  335 (343)
Q Consensus       319 ~s~~~ai~~a~~~~~~~  335 (343)
                      .||++||++|.+|++||
T Consensus       311 ~s~~~Ai~~a~~~~~~r  327 (328)
T 1yxo_A          311 GSLQVALETAYQMAASR  327 (328)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999715


No 3  
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2}
Probab=100.00  E-value=0  Score=862.01  Aligned_cols=324  Identities=37%  Similarity=0.584  Sum_probs=306.2

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHH-HHHCCCCCCEEECCCCHHCCCCCCCEEEEC
Q ss_conf             9888838997189877478999998428523248989999399999999-998189974475386101112678537610
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNAR-AKQLNLSVPLYETDCKNAVSIFKKALPIIS   79 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~-~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~   79 (343)
                      |++ ++|+||+|||+||||||++|+|++..+. .++++++||..++++. ++.++.+++++.++..++....++.+++++
T Consensus         4 M~~-k~IaIT~GDPaGIGpEIilKal~~~~~~-~~~~vvig~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~v~d   81 (330)
T 2hi1_A            4 MET-KTVAITMGDPAGIGPEIIVKALSEDGLN-GAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVID   81 (330)
T ss_dssp             -CC-CCEEEECCCTTTTHHHHHHHHHTSTTTT-TCSEEEEECHHHHHHHHHTTSSCCCEEEEESSGGGCCCCTTEEEEEE
T ss_pred             CCC-CEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCEEEEEC
T ss_conf             899-9189989986273899999999673504-89989997899999999975899950343688666306788157731


Q ss_pred             CC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             33--3220013553100000246778877664301234304432234477764101325647899998342358866521
Q gi|254780397|r   80 SP--CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPV  157 (343)
Q Consensus        80 ~~--~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~  157 (343)
                      .+  ...++++|++++++|+++++||+.|+++|++|++|||||+||||++|+.+|++|+||||||+++++.+     +++
T Consensus        82 ~~~~~~~~~~~G~~~~~~g~~a~~~l~~A~~~~~~g~~dalVT~PInK~~i~~aG~~f~GHTE~La~~~~~~-----~~~  156 (330)
T 2hi1_A           82 EPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSR-----DYA  156 (330)
T ss_dssp             CCCSCGGGCCTTSCCHHHHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCSSHHHHHHHHTTCC-----CCE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHCCCC-----CHH
T ss_conf             554556433357530566899999999999997438861798378447789764899786518877640489-----716


Q ss_pred             CCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             12332211266530453133343201024567888989999985313456707999636654453100001210244588
Q gi|254780397|r  158 MMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAI  237 (343)
Q Consensus       158 Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI  237 (343)
                      |||++++|||+|+|+|||||+|++.||+++|.+++++++++|++ |++.+||||||||||||||+|+||+||+++|.|||
T Consensus       157 Mml~~~~LrV~lvTtHIpLkdV~~~it~~~I~~~i~l~~~~lk~-~~i~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai  235 (330)
T 2hi1_A          157 MVLYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAI  235 (330)
T ss_dssp             EEEECSSCEEEESCCSSCHHHHHHHCCHHHHHHHHHHHHHHHHH-TTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHH
T ss_pred             HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             54137986588524787599998645177899999999999764-00569854666328997555655567777688899


Q ss_pred             HHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCC
Q ss_conf             86421587643455511210002236676899985120225555414477279992087647558875522213368668
Q gi|254780397|r  238 TYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQ  317 (343)
Q Consensus       238 ~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~  317 (343)
                      +++|++|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||
T Consensus       236 ~~~~~~gi~~~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~f~~~Vn~TlGLp~iRtSpdHGTa~diagk~~a~  315 (330)
T 2hi1_A          236 TDARAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAK  315 (330)
T ss_dssp             HHHHTTTCEEEEEECHHHHHHHHHTTSCSEEEESSHHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTTTTTTTCCC
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCC
T ss_conf             99997599888998803788874236999999776464116465335787779966999357789987166661689898


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             389999999999999
Q gi|254780397|r  318 EESLVSALKIAAQLG  332 (343)
Q Consensus       318 ~~s~~~ai~~a~~~~  332 (343)
                      ++||++||++|.+||
T Consensus       316 ~~s~~~Ai~~a~~la  330 (330)
T 2hi1_A          316 SESMAVSIKLAMQLA  330 (330)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             699999999999869


No 4  
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=99.05  E-value=9e-09  Score=71.76  Aligned_cols=286  Identities=17%  Similarity=0.181  Sum_probs=164.7

Q ss_pred             CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC
Q ss_conf             88838997189877478999998428523248989999399999999998189974-47538610111267853761033
Q gi|254780397|r    3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP   81 (343)
Q Consensus         3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~   81 (343)
                      +.++|++    |.|=-+++ ++|...-.-...+.||++|+++.++..++.++++++ ++.+++.+.... ....   ..-
T Consensus        21 ~~~rIv~----aeg~d~~v-L~Aa~~~~~~gi~~PILvG~~~~I~~~a~~lgl~l~~~eIIdp~~~~~~-~~~~---~~~   91 (329)
T 1td9_A           21 KDVKIVF----PEGLDERI-LEAVSKLAGNKVLNPIVIGNENEIQAKAKELNLTLGGVKIYDPHTYEGM-EDLV---QAF   91 (329)
T ss_dssp             SCCEEEE----SCTTCHHH-HHHHHHHHHTTSSEEEEESCHHHHHHHHHTTTBCCTTCEEECTTTCTTH-HHHH---HHH
T ss_pred             CCCEEEE----ECCCCHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCHHHHH-HHHH---HHH
T ss_conf             9998997----08799899-9999999986996899977999999999986998556575172002899-9999---999


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC-CCCCCCCCC
Q ss_conf             3220013553100000246778877664301234304432234477764101325647899998342358-866521123
Q gi|254780397|r   82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTG-ITFKPVMML  160 (343)
Q Consensus        82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~-~~~~~~Mll  160 (343)
                      ....-..| .....-+...+....|..++..|++|++|+|-++......         +..-+..+...+ .....+|+|
T Consensus        92 ~~~rk~~g-~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~~~~~~l---------~~~l~~ig~~~g~~~~s~~~~~  161 (329)
T 1td9_A           92 VERRKGKA-TEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTV---------RPALQIIKTKEGVKKTSGVFIM  161 (329)
T ss_dssp             HHHTTTSS-CHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCHHHHH---------HHHHHTSCBCTTCCCCEEEEEE
T ss_pred             HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCHHHH---------HHHHHHCCCCCCCCEEEEEEEE
T ss_conf             99863788-0999999988778899998965573221137766709999---------9999631579997257788762


Q ss_pred             CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             32211266530453133343201024567888989999985313456707999636654453100001210244588864
Q gi|254780397|r  161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL  240 (343)
Q Consensus       161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~  240 (343)
                      ...+-.+.+.=+++-     -.-|.+.+.+-+....+..+ .||++ ||+|++...    |.|.--.++.....-|.+..
T Consensus       162 ~~~~~~l~~tD~~vn-----i~P~~eqla~Ia~~aa~~a~-~lgie-PkVAlLs~s----~~~~~~~~s~~~~~~a~~~~  230 (329)
T 1td9_A          162 ARGEEQYVFADCAIN-----IAPDSQDLAEIAIESANTAK-MFDIE-PRVAMLSFS----TKGSAKSDETEKVADAVKIA  230 (329)
T ss_dssp             EETTEEEEEECSSSC-----SSCCHHHHHHHHHHHHHHHH-TTTCC-CCEEEECSS----STTSSCSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCCC-----CCCCHHHHHHHHHHHHHHHH-HHCCC-CCCCCEECC----CCCCCCCHHHHHHHHHHHHH
T ss_conf             268764799789887-----49799999999999999999-71669-955000024----56798870277899999998


Q ss_pred             HHC--CCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHH-CCCCEEE---EEEE--CCEEEECC
Q ss_conf             215--8764345551121000223----------667689998512022555541-4477279---9920--87647558
Q gi|254780397|r  241 RND--NKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTL-DFNQTVN---ITLG--LPFVRTSP  302 (343)
Q Consensus       241 ~~~--g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l-~f~~~Vn---~t~G--Lp~irtSp  302 (343)
                      +++  +..++||+..|.++.+...          ++-|+.|.--=|-|-|-.|++ .|..+..   +-.|  -|++-+|.
T Consensus       231 ~~~~~~~~vdGpl~~D~Al~~~~a~~k~~~s~vaG~AnvLi~P~l~agNi~yK~l~~~~~~~~~GpIl~G~~~PV~~~sR  310 (329)
T 1td9_A          231 KEKAPELTLDGEFQFDAAFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIAQRLGNFEAVGPILQGLNMPVNDLSR  310 (329)
T ss_dssp             HHHCTTSCEEEEECHHHHHCHHHHHHHCTTSSCSSCCSEEECSSHHHHHHHHHHHHHTTTCEEEEEEEESBSSCEEECCT
T ss_pred             HCCCCCCEECCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEECHHHHCCCCCEEECCC
T ss_conf             65188866616653876539877753089986689799899588178789999999835983874376677998797899


Q ss_pred             CCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8755222133686683899999999999
Q gi|254780397|r  303 DHGTAFDIAGSSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       303 dHGTafdiagk~~a~~~s~~~ai~~a~~  330 (343)
                      .            ++.+..++++-+|+-
T Consensus       311 ~------------~s~~~i~~~~ala~~  326 (329)
T 1td9_A          311 G------------CNAEDVYNLALITAA  326 (329)
T ss_dssp             T------------CCHHHHHHHHHHHHH
T ss_pred             C------------CCHHHHHHHHHHHHH
T ss_conf             9------------999999999999999


No 5  
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=99.04  E-value=4.7e-09  Score=73.45  Aligned_cols=287  Identities=13%  Similarity=0.089  Sum_probs=169.1

Q ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf             838997189877478999998428523248989999399999999998189974-4753861011126785376103332
Q gi|254780397|r    5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSPCG   83 (343)
Q Consensus         5 ~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~~~   83 (343)
                      ++|++.-|+    -+.+ ++|...-.-...+.||++|++..++..++.++++++ +..+++.+...........+    .
T Consensus        27 krIvf~Ege----d~rv-L~Aa~~~~~egia~PILVG~~~~I~~~~~~~gl~l~~ieIIdp~~~~~~~e~~~~~~----~   97 (355)
T 1vmi_A           27 ARVVFPDAL----DQRV-LKAAQYLHQQGLATPILVANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRW----L   97 (355)
T ss_dssp             CEEEESCCS----SHHH-HHHHHHHHHTTSCEEEEESCHHHHHHHHHHHTCCCTTCEEECTTSCHHHHHHHHHHH----H
T ss_pred             CEEEECCCC----CHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHH----H
T ss_conf             989971889----9899-999999998799579998689999999997799977778977878989999999999----9


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC-CCCC-CCCC
Q ss_conf             2001355310000024677887766430123430443223447776410132564789999834235886-6521-1233
Q gi|254780397|r   84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGIT-FKPV-MMLS  161 (343)
Q Consensus        84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~-~~~~-Mll~  161 (343)
                       .-.-+.....+-+...+....|+.++..|++|++|+|-++....         +...+-+..+...+.. ...+ ||+.
T Consensus        98 -~r~~~~~~~~a~~~~~d~~~~Aa~mV~~G~AD~lv~G~~~tt~~---------~l~~~~~iiG~~~g~~~~s~~~~m~~  167 (355)
T 1vmi_A           98 -ARAGEKTPPDALEKLTDPLMFAAAMVSAGKADVCIAGNLSSTAN---------VLRAGLRIIGLQPGCKTLSSIFLMLP  167 (355)
T ss_dssp             -HHHGGGCCTTHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCHHH---------HHHHHHHHTCBCTTCCCCEEEEEEEE
T ss_pred             -HHHCCCCHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCHHH---------HHHHHHHHHCCCCCCEEEEEEEEEEC
T ss_conf             -98479979999999737177767745367666472377646899---------99999865135764201212456520


Q ss_pred             -CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             -2211266530453133343201--0245678889899999853134567079996366544531000012102445888
Q gi|254780397|r  162 -GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT  238 (343)
Q Consensus       162 -~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~  238 (343)
                       .++-.+.+       .|..-.+  |.+.+.+-+....+..++.+| ..||+|++...    |.|.--.+......-|.+
T Consensus       168 ~~~~~~l~~-------aD~~vn~~P~~eqla~Ia~~aa~~a~~l~g-~~PkVAlLS~S----~~gs~~~~s~~~~~~a~~  235 (355)
T 1vmi_A          168 QYSGPALGF-------ADCSVVPQPTAAQLADIALASAETWRAITG-EEPRVAMLSFS----SNGSARHPCVANVQQATE  235 (355)
T ss_dssp             SSSCCCEEE-------ESSSSCSSCCHHHHHHHHHHHHHHHHHHHS-SCCEEEEECSC----STTSSCSHHHHHHHHHHH
T ss_pred             CCCCCEEEE-------ECCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCC----CCCCCCCHHHHHHHHHHH
T ss_conf             468736998-------367666689899999999999999999669-99985521213----577988644899999999


Q ss_pred             HHHHC--CCCCCCCCCCHHHEECCC----------CCCCCEEEEEECCHHHHHHHHHC-CCCEEE---EEEE--CCEEEE
Q ss_conf             64215--876434555112100022----------36676899985120225555414-477279---9920--876475
Q gi|254780397|r  239 YLRND--NKNIIGPLPADSMFHHSA----------RQCYDVAICMYHDQALIPIKTLD-FNQTVN---ITLG--LPFVRT  300 (343)
Q Consensus       239 ~~~~~--g~~v~GP~paDt~F~~~~----------~~~~D~vlamYHDQglip~K~l~-f~~~Vn---~t~G--Lp~irt  300 (343)
                      .++++  ++.|+||+..|.++.+..          .++-|+.|.=-=|-|-|..|++- +..+..   +-+|  -|+.-+
T Consensus       236 ~~~~~~~~~~vdGemq~D~Al~~~~~~~k~~~s~l~G~AnvLIfPnl~agNi~yK~l~~~~~~~~iGpiL~G~~~Pv~~~  315 (355)
T 1vmi_A          236 IVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPMHDL  315 (355)
T ss_dssp             HHHHHCTTSEEEEEECHHHHHCHHHHHHHCTTCTTTTCCSEEECSSHHHHHHHHHHHHHHHCEEEEEEEEESBSSCEEEC
T ss_pred             HHHHHCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCEEEC
T ss_conf             99722899721477631224279888612888977887868996887888999999998449838707775779988989


Q ss_pred             CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             5887552221336866838999999999999985
Q gi|254780397|r  301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQ  334 (343)
Q Consensus       301 SpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~  334 (343)
                      |..            ++.+..++.+-+|.--++.
T Consensus       316 sr~------------~sv~~i~n~~aiaa~~aq~  337 (355)
T 1vmi_A          316 SRG------------CSVQEIIELALVAAVPRQT  337 (355)
T ss_dssp             CTT------------CCHHHHHHHHHHHHCCC--
T ss_pred             CCC------------CCHHHHHHHHHHHHHHHHH
T ss_conf             999------------9999999999999999999


No 6  
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=98.99  E-value=1.8e-08  Score=69.90  Aligned_cols=290  Identities=16%  Similarity=0.116  Sum_probs=169.7

Q ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCCC
Q ss_conf             83899718987747899999842852324898999939999999999818997447538610111267853761033322
Q gi|254780397|r    5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCGA   84 (343)
Q Consensus         5 ~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~~   84 (343)
                      ++|++.-|+    -+. +++|.....-...+.||++|+++.++..++.++++ .+..+++.+.... ....   +.-...
T Consensus        17 krIv~~ege----D~r-vL~Aa~~~~~~gi~~pILvG~~~~I~~~a~~l~l~-~~eiIdp~~~e~~-~~~~---~~~~~~   86 (333)
T 2af4_C           17 KTIALPETE----DIR-TLQAAAKILERGIADIVLVGNEADIKALAGDLDLS-KAKIVDPKTYEKK-DEYI---NAFYEL   86 (333)
T ss_dssp             CEEEECCTT----SHH-HHHHHHHHHHHTSCEEEEESCHHHHHHHHSSCCCT-TSEEECTTSCTTH-HHHH---HHHHHH
T ss_pred             CEEEECCCC----CHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC-CCEEECCCCCHHH-HHHH---HHHHHH
T ss_conf             989982879----989-99999999986993799987999999999858998-6778788652668-9999---999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCC
Q ss_conf             00135531000002467788776643012343044322344777641013256478999983423588-66521123322
Q gi|254780397|r   85 KIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGI-TFKPVMMLSGP  163 (343)
Q Consensus        85 ~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~-~~~~~Mll~~~  163 (343)
                      .-.-|.....+.+...+....|+.+++.|++|++|+|-++......         ...-+.-+...+. ....+++|.-.
T Consensus        87 r~~kG~~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~~~~~~l---------~~~~~~ig~~~g~~~~s~~~i~~~p  157 (333)
T 2af4_C           87 RKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTL---------RPAVQIVKTAKGAALASAFFIISVP  157 (333)
T ss_dssp             HGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCSHHHH---------HHHHHHTCBSTTCSCCEEEEEEECT
T ss_pred             HCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCHHHH---------HHHHHHHHCCCCCEEEEEEEEEECC
T ss_conf             5447999999998831779999999974876636227888829999---------9999996403774022258999603


Q ss_pred             CC-----EEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf             11-----266530453133343201--02456788898999998531345670799963665445310000121024458
Q gi|254780397|r  164 QL-----RTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA  236 (343)
Q Consensus       164 ~L-----~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa  236 (343)
                      ..     ++.++|      |..=.+  |.+.+.+-+....+..+ .||+..||+|++...    |.|.--.+..+...-|
T Consensus       158 ~~~~~~~~~l~~t------D~~vn~~P~~eqla~Ia~~aa~~~~-~lg~~~PkVAlLS~s----~~~s~~~~s~~~~~~a  226 (333)
T 2af4_C          158 DCEYGSDGTFLFA------DSGMVEMPSVEDVANIAVISAKTFE-LLVQDVPKVAMLSYS----TKGSAKSKLTEATIAS  226 (333)
T ss_dssp             TCCSTBTTEEEEE------TSSSCSSCCHHHHHHHHHHHHHHHH-HHHCSCCEEEEECSC----STTSCCSHHHHHHHHH
T ss_pred             CCCCCCCCEEEEC------CCCCEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEEC----CCCCCCCCHHHHHHHH
T ss_conf             3335778648960------7755459099999999999999999-855633305677503----5789998038999999


Q ss_pred             HHHHHHC--CCCCCCCCCCHHHEECCC----------CCCCCEEEEEECCHHHHHHHHHCCCC-EEE---EEEE--CCEE
Q ss_conf             8864215--876434555112100022----------36676899985120225555414477-279---9920--8764
Q gi|254780397|r  237 ITYLRND--NKNIIGPLPADSMFHHSA----------RQCYDVAICMYHDQALIPIKTLDFNQ-TVN---ITLG--LPFV  298 (343)
Q Consensus       237 I~~~~~~--g~~v~GP~paDt~F~~~~----------~~~~D~vlamYHDQglip~K~l~f~~-~Vn---~t~G--Lp~i  298 (343)
                      .+.+++.  +..|+||+..|.++.+..          .++-|+.|---=|-|-|-.|++-+.. +..   +-.|  -|+.
T Consensus       227 ~~~~~~~~~~~~vdGplq~D~Al~~e~a~~K~~~s~v~G~AnvLifP~l~agNi~yK~l~~~~~~~~~Gpil~G~~~Pv~  306 (333)
T 2af4_C          227 TKLAQELAPDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPITQGLAKPIN  306 (333)
T ss_dssp             HHHHHHHCTTSEEEEEECHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHHHTSCCEEEEEEEESBSSCEE
T ss_pred             HHHHHHHCCCEEEECCCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCEE
T ss_conf             99986137890571563076650978898548998678989989938807878999999985397797506446899878


Q ss_pred             EECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             75588755222133686683899999999999998520
Q gi|254780397|r  299 RTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKN  336 (343)
Q Consensus       299 rtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~  336 (343)
                      -+|.            -++.+..++++-+|+-.|..++
T Consensus       307 ~~SR------------~~s~~~i~~~~ala~~~A~~~~  332 (333)
T 2af4_C          307 DLSR------------GCSDEDIVGAVAITCVQAAAQD  332 (333)
T ss_dssp             ECCT------------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCC------------CCCHHHHHHHHHHHHHHHHHHC
T ss_conf             7999------------9999999999999999998501


No 7  
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=98.85  E-value=9.6e-08  Score=65.61  Aligned_cols=288  Identities=14%  Similarity=0.133  Sum_probs=160.9

Q ss_pred             CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC
Q ss_conf             88838997189877478999998428523248989999399999999998189974-47538610111267853761033
Q gi|254780397|r    3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP   81 (343)
Q Consensus         3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~   81 (343)
                      +.++|++.-|+    -+.+ ++|...-.-...+.||++|+++.++..++.++++.. +..+++.+......-.-.+.   
T Consensus        23 ~~krIvfaeg~----d~rv-L~Aa~~~~~~gi~~PILvG~~~~I~~~~~~~gl~~~~~eIId~~~~~~~~~~~~~~~---   94 (337)
T 1r5j_A           23 KNMKIVFPEGN----DERV-VRAAARLKFEGLLEPIILGQSEEVRNLLTKLGFADQDYTIINPNEYADFDKMKEAFV---   94 (337)
T ss_dssp             SCCEEEESCSS----CHHH-HHHHHHHHTTTSCEEEEBSCHHHHHHHHHHTTCCCSSCCCBCSSSCTTHHHHHHHHH---
T ss_pred             CCCEEEEECCC----CHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH---
T ss_conf             89989980879----9899-999999998699689997799999999997798966755778897688999999999---


Q ss_pred             CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCCHHHHHHHHHCCCCCC-CCCC--
Q ss_conf             322001355-31000002467788776643012343044322344777-641013256478999983423588-6652--
Q gi|254780397|r   82 CGAKIVTGT-PNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLL-YQEKFKFPGHTEFLAELAKKNTGI-TFKP--  156 (343)
Q Consensus        82 ~~~~~~~G~-~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l-~~aG~~f~GhTE~La~~~~~~~~~-~~~~--  156 (343)
                         +..-++ ....+.+..-+....|+.+...|++|++|+|-++..+- ...-.          +.-+...+. ....  
T Consensus        95 ---~~r~~~~~~~~a~~~~~d~~~~a~~mv~~G~aD~lv~G~~~~t~~~l~~~l----------~~i~~~~~~~~~s~~~  161 (337)
T 1r5j_A           95 ---EVRKGKATLEDADKMLRDVNYFGVMLVKMGLADGMVSGAIHSTADTVRPAL----------QIIKTKPGISRTSGVF  161 (337)
T ss_dssp             ---HHHTTTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCSHHHHHHHH----------HSSCBCTTCSSCEEEE
T ss_pred             ---HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH----------HHHCCCCCCCCCCEEE
T ss_conf             ---997268869999998664689999999679986565155557388887789----------8725788874332268


Q ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf             11233221126653045313334320102456788898999998531345670799963665445310000121024458
Q gi|254780397|r  157 VMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA  236 (343)
Q Consensus       157 ~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa  236 (343)
                      +|.+-..+ ++..+| -..   |.-.-|.+.+.+-+....+.. +.||+. ||+|++..    .|.|.--.+..+...-|
T Consensus       162 ~~~~~~~~-~~l~~t-D~a---vn~~P~~eqla~Ia~~aa~~~-r~~g~e-PkVA~LS~----s~~~s~~~~s~~~~~~a  230 (337)
T 1r5j_A          162 LMNRENTS-ERYVFA-DCA---INIDPTAQELAEIAVNTAETA-KIFDID-PKIAMLSF----STKGSGKAPQVDKVREA  230 (337)
T ss_dssp             EEEEGGGT-EEEEES-CSS---SCSSCCHHHHHHHHHHHHHHH-HHTTCC-CCEEEECS----CSTTSSCSHHHHHHHHH
T ss_pred             EEEECCCC-CEEEEE-CCE---EECCCCHHHHHHHHHHHHHHH-HHCCCC-CCEEEEEC----CCCCCCCCHHHHHHHHH
T ss_conf             88503456-527972-151---221839999999999999999-973999-87001102----33579885569999999


Q ss_pred             HHHHHH--CCCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHHCCCCE---E-EEEEEC--CEE
Q ss_conf             886421--58764345551121000223----------66768999851202255554144772---7-999208--764
Q gi|254780397|r  237 ITYLRN--DNKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTLDFNQT---V-NITLGL--PFV  298 (343)
Q Consensus       237 I~~~~~--~g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~f~~~---V-n~t~GL--p~i  298 (343)
                      .+.+++  .+..++||+..|.++.+...          ++-|+.+.-.=|-|-|-.|++-+..+   + .+-.|+  |+.
T Consensus       231 ~~~~~~~~~~~~vdGpl~~D~Al~~~~a~~K~~~s~vaG~AnvLIfP~l~agNi~yK~l~~~~~~~~~Gpil~G~~~Pv~  310 (337)
T 1r5j_A          231 TEIATGLNPDLALDGELQFDAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQRLGMFDAIGPILQGLNKPVN  310 (337)
T ss_dssp             HHHHHHHCTTSCEEEEECHHHHHCHHHHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHHHHTTCCEEEEEEEESBSSCEE
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEECHHHHCCCCCEE
T ss_conf             99998468996347874155552999999748998778989989918827879999999983498088316557899879


Q ss_pred             EECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             755887552221336866838999999999999985
Q gi|254780397|r  299 RTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQ  334 (343)
Q Consensus       299 rtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~  334 (343)
                      -+|..            ++.+..++.+-+|+--|..
T Consensus       311 ~~SR~------------~s~~~i~~~~alaa~~A~~  334 (337)
T 1r5j_A          311 DLSRG------------SSAEDIYKLAIITAAQAIE  334 (337)
T ss_dssp             ECCTT------------CCHHHHHHHHHHHHHHHHT
T ss_pred             ECCCC------------CCHHHHHHHHHHHHHHHHH
T ss_conf             79999------------9999999999999999998


No 8  
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=98.27  E-value=2.9e-05  Score=50.71  Aligned_cols=269  Identities=16%  Similarity=0.186  Sum_probs=150.6

Q ss_pred             CCCCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECC
Q ss_conf             8883899-71898774789999984285-232489899993999999999981899744753861011126785376103
Q gi|254780397|r    3 EFLPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISS   80 (343)
Q Consensus         3 k~~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~   80 (343)
                      +.++|+| .||  .-=||+.+++....- +......++++|+...++..   +..                ...+.+++.
T Consensus         2 ~~ikIavDaMG--GD~~P~~~v~Ga~~al~~~~d~~i~LvG~e~~i~~~---l~~----------------~~~i~iv~a   60 (336)
T 1u7n_A            2 NAMKIAVDAMG--GDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKY---ITD----------------EKNITIIHT   60 (336)
T ss_dssp             --CEEEEESSC--STTTTHHHHHHHHHHHHHCTTCEEEEEECHHHHHTT---CSC----------------CTTEEEEEC
T ss_pred             CCEEEEEECCC--CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH---HCC----------------CCCEEEEEC
T ss_conf             96299997059--866808899999999987889879999699999987---521----------------688289958


Q ss_pred             CCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             3322001355310000--02467788776643012343044322344777641013256478999983423588665211
Q gi|254780397|r   81 PCGAKIVTGTPNPQTA--SSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM  158 (343)
Q Consensus        81 ~~~~~~~~G~~s~~~g--~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M  158 (343)
                      +..  +.... ++..+  +--=.|+..|++++++|++||+|++=-+-..+-.+-+ .      |..+-    +...-.+|
T Consensus        61 ~~~--I~m~d-~p~~alr~kk~SSm~~a~~lvk~g~ada~VSaGnTGA~~a~~~~-~------lg~i~----gi~RPal~  126 (336)
T 1u7n_A           61 DEK--IASDD-EPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLF-I------VGRIK----NVERPGLM  126 (336)
T ss_dssp             SCC--CCTTC-CHHHHHHHCTTSHHHHHHHHHHHTSCSEEEESSCHHHHHHHHHH-T------TCBCT----TCSSCEEE
T ss_pred             CCC--CCCCC-CHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH-H------HCCCC----CCCCCCCC
T ss_conf             975--45898-67899872567559999999866577779925860889999898-7------61455----66666430


Q ss_pred             CCC----CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHH
Q ss_conf             233----2211266530453133343201--0245678889899999853134567079996366544531000012102
Q gi|254780397|r  159 MLS----GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNI  232 (343)
Q Consensus       159 ll~----~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~i  232 (343)
                      -.+    +.+-.++       |-||=..+  +.+.+.+...+=.-..+..+|+++||++++-    -|+.-.-|+|.   
T Consensus       127 ~~~Pt~~~~~~~~~-------lLD~GAN~d~~~~~L~qFA~mG~~ya~~~~~i~~PrVgLLN----iG~E~~KG~~~---  192 (336)
T 1u7n_A          127 STLPVMGEPDKGFD-------MLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLN----NGTEETKGSEL---  192 (336)
T ss_dssp             EEEECTTCTTCEEE-------EECSSSCSCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEC----SCC----CCHH---
T ss_pred             EECCCCCCCCCCEE-------EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---
T ss_conf             33565678878369-------99888789889999999999999999974799898699971----57424557599---


Q ss_pred             HHHHHHHHHH-CCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHC--------------CCCEE--------
Q ss_conf             4458886421-587643455511210002236676899985120225555414--------------47727--------
Q gi|254780397|r  233 IIPAITYLRN-DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLD--------------FNQTV--------  289 (343)
Q Consensus       233 I~PaI~~~~~-~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~--------------f~~~V--------  289 (343)
                      +.-|-+.+++ ..++..|..=++.+|.    ++.|+|||==. -|-+.+|+..              |.++.        
T Consensus       193 ~~~a~~lL~~~~~~nf~G~vEg~di~~----G~~DVvV~DGF-tGNi~LKt~EG~~~~i~~~lk~~~~~~~~~~k~g~ll  267 (336)
T 1u7n_A          193 TKKAFELLAADETINFVGNVEARELLN----GVADVVVTDGF-TGNAVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALL  267 (336)
T ss_dssp             HHHHHHHHHHCTTSCEEEEECGGGGGG----CSCSEEECCHH-HHHHHHHHHHHHHHHHHHHHHHHHTC-------CHHH
T ss_pred             HHHHHHHHHHCCCCCCEEECCCCCCCC----CCCEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999974057865210056353568----98549996881-3799998766689999999998750023899999999


Q ss_pred             -------------------EEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             -------------------9992087647558875522213368668389999999999999852
Q gi|254780397|r  290 -------------------NITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK  335 (343)
Q Consensus       290 -------------------n~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~  335 (343)
                                         .+-|||.=+.          |.+-|.++...+.+||++|.++.++.
T Consensus       268 ~~~~l~~~k~~~D~~~~gGA~lLGv~g~v----------ik~HG~S~~~ai~nAI~~a~~~~~~~  322 (336)
T 1u7n_A          268 LKNALHGMKDEMDYSKHGGAVLFGLKAPV----------IKTHGATGPDAVRYTIRQIHTMLETQ  322 (336)
T ss_dssp             HHHHHHHHHHHTCGGGGCCEEEETBSSCE----------EECCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCEE----------EECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99999999976791013987897378108----------97589999899999999999999968


No 9  
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=98.16  E-value=2.8e-05  Score=50.80  Aligned_cols=271  Identities=14%  Similarity=0.159  Sum_probs=155.1

Q ss_pred             CCCCCCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEE
Q ss_conf             988883899-71898774789999984285-2324898999939999999999818997447538610111267853761
Q gi|254780397|r    1 MDEFLPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPII   78 (343)
Q Consensus         1 M~k~~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~   78 (343)
                      |+  .+|+| .||  .--||+.+++..... +-.....++++|+.+.++...+..                  ++.+.++
T Consensus         1 Ms--irIAvDaMG--GD~~P~~vv~Ga~~al~~~~~~~i~LvG~e~~i~~~l~~~------------------~~ri~iv   58 (345)
T 1vi1_A            1 MS--LRIAVDAMG--GDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTT------------------SDRITVL   58 (345)
T ss_dssp             -C--EEEEEESSC--SSSTTHHHHHHHHHHHHHCTTEEEEEEECHHHHHTTCCSC------------------CTTEEEE
T ss_pred             CC--EEEEEEECC--CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHC------------------CCCEEEE
T ss_conf             95--299998059--8668088999999999978897699992899999998536------------------2663899


Q ss_pred             CCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             033322001355-3100000246778877664301234304432234477764101325647899998342358866521
Q gi|254780397|r   79 SSPCGAKIVTGT-PNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPV  157 (343)
Q Consensus        79 ~~~~~~~~~~G~-~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~  157 (343)
                      +.+..  +.... |...=-+---.|+..|++++++|++||+|.+=-.-..+-.+-+.       |    +.-.+...-.+
T Consensus        59 ~a~~v--I~m~d~p~~alr~kk~SSm~~a~~lvk~g~ada~VSaGnTGAl~a~a~~~-------l----~~i~gi~RPai  125 (345)
T 1vi1_A           59 HADEV--IEPTDEPVRAVRRKKNSSMVLMAQEVAENRADACISAGNTGALMTAGLFI-------V----GRIKGIDRPAL  125 (345)
T ss_dssp             ECCBC--CCTTSCHHHHHHHCTTBHHHHHHHHHHTTSCSEEEECSCHHHHHHHHHHT-------T----CBCTTCSSCEE
T ss_pred             ECCCC--CCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH-------H----HHHCCCCCCCE
T ss_conf             28874--05898768998845565599999983032467798446438999999987-------7----51047555531


Q ss_pred             CCCC-CCC-CEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHH
Q ss_conf             1233-221-1266530453133343201--02456788898999998531345670799963665445310000121024
Q gi|254780397|r  158 MMLS-GPQ-LRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNII  233 (343)
Q Consensus       158 Mll~-~~~-L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI  233 (343)
                      |-.+ +.+ -.++       |-||=.++  +.+.+.+...+-.-..+..+|+++||++++-.    |+.-.-|+|.   +
T Consensus       126 a~~~Pt~~g~~~~-------llD~GAN~d~~p~~L~qFA~mGs~yak~~~g~~~PrVgLLNi----G~E~~KG~~~---~  191 (345)
T 1vi1_A          126 APTLPTVSGDGFL-------LLDVGANVDAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLNV----GTEDKKGNEL---T  191 (345)
T ss_dssp             ECEECCSSSCCEE-------EECSSSCSSCCHHHHHHHHHHHHHHHHHTSCCSSCEEEEEES----SSSTTCSCHH---H
T ss_pred             EEECCCCCCCCCE-------EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC----CCCCCCCCHH---H
T ss_conf             2554566898617-------973785667798999999999999999955999994777635----6656676699---9


Q ss_pred             HHHHHHHHH-CCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC---------------------------
Q ss_conf             458886421-5876434555112100022366768999851202255554144---------------------------
Q gi|254780397|r  234 IPAITYLRN-DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDF---------------------------  285 (343)
Q Consensus       234 ~PaI~~~~~-~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f---------------------------  285 (343)
                      .-|-+.+++ ..++..|-.=++-+|.    ++.|+|||== =-|-+.+|++.-                           
T Consensus       192 kea~~lL~~~~~~nf~GnvEg~di~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~i~~~lk~~~~~~~~~k~~~ll~~  266 (345)
T 1vi1_A          192 KQTFQILKETANINFIGNVEARDLLD----DVADVVVTDG-FTGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLK  266 (345)
T ss_dssp             HHHHHHHHSCTTSEEEEEEEGGGGGG----TSCSEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCH
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCCCC----CCCEEEEECC-CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999887518961587557665678----9940999788-235999985520678999999999865488888999879


Q ss_pred             -------------CCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             -------------77279992087647558875522213368668389999999999999852
Q gi|254780397|r  286 -------------NQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK  335 (343)
Q Consensus       286 -------------~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~  335 (343)
                                   ..|=..-|||.=+.          |.+-|.+|..++.+||++|.++++++
T Consensus       267 ~~l~~l~~~~D~~~~gGA~lLGl~giv----------ik~HGsS~~~ai~nAI~~A~~~~~~~  319 (345)
T 1vi1_A          267 PKLKEMKMKMEYSNYGGASLFGLKAPV----------IKAHGSSDSNAVFRAIRQAREMVSQN  319 (345)
T ss_dssp             HHHHHHHHHHCGGGSCCEEEETBSSCE----------EECCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCCCCCEEEECCCCEE----------EEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999975791207998897378108----------99389999899999999999999966


No 10 
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583}
Probab=98.14  E-value=0.00045  Score=43.54  Aligned_cols=203  Identities=21%  Similarity=0.227  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             77887766430123430443223447776410132564789999834235886652112332211266530453133343
Q gi|254780397|r  101 ANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC  180 (343)
Q Consensus       101 ~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~  180 (343)
                      ++...|+.++++|++|++|.|=++..++..+.....+         +...+.....+++|...+=++.++      .|+.
T Consensus        56 ~~~~~a~~lv~~G~aD~lv~G~~~t~~~~~~~l~~i~---------~~~~~~~~~~~~~~~~~~~~~~~l------~D~g  120 (279)
T 1yco_A           56 AVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEH---------QLKNKPILSHVAMVELPAGKTFLL------TDCA  120 (279)
T ss_dssp             HHHHHHHHHHHSTTCSEEEECSSCHHHHHHHHTCTTT---------CCBCSSSCEEEEEEECSSSCEEEE------ECSS
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHC---------CCCCCCEEEEEEEEEECCCCEEEE------EEEE
T ss_conf             9999999999769988899898883999999998726---------889986689999998049957999------7227


Q ss_pred             HH--CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCHHHE
Q ss_conf             20--102456788898999998531345670799963665445310000121024458886421-587643455511210
Q gi|254780397|r  181 RI--LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN-DNKNIIGPLPADSMF  257 (343)
Q Consensus       181 ~~--it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~-~g~~v~GP~paDt~F  257 (343)
                      -.  -+.+.+.+-........+ .||+..|+++++.-+    +.+.-+.+..+.-.-+.+..+. ....+.||...|.+.
T Consensus       121 ~N~~p~~e~L~~~a~~~~~~ak-~~g~~~~~v~ll~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~  195 (279)
T 1yco_A          121 MNIAPTQATLIEIVENAKEVAQ-KLGLHHPKIALLSAA----ENFNPKMPSSVLAKEVTAHFNDQQEATVFGPLSLDLAT  195 (279)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHH-HTTCSSCEEEEECSC----SSCCTTCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECC----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             8727679999999999999999-828999955888513----57789970799999999986543543235631112211


Q ss_pred             E----------CCCCCCCCEEEEEECCHHHHHHHHHCCCCEEE---EEEEC--CEEEECCCCCCCHHHCCCCCCCHHHHH
Q ss_conf             0----------02236676899985120225555414477279---99208--764755887552221336866838999
Q gi|254780397|r  258 H----------HSARQCYDVAICMYHDQALIPIKTLDFNQTVN---ITLGL--PFVRTSPDHGTAFDIAGSSLTQEESLV  322 (343)
Q Consensus       258 ~----------~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn---~t~GL--p~irtSpdHGTafdiagk~~a~~~s~~  322 (343)
                      .          ....+..|..+.--=+-|-+-+|++-+-.+..   +-+|+  |++-+|            +-++.+...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~i~p~l~a~ni~~K~l~~l~~~~~Gg~llG~~~pVi~~s------------rs~s~~~i~  263 (279)
T 1yco_A          196 SEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVGGTIVGTKVPVVLTS------------RSDSTESKF  263 (279)
T ss_dssp             CHHHHHHTTCCSSCSSCCSEEECSSHHHHHHHHHHHHHHSCCEEEEEEESBSSCEEECC------------TTSCHHHHH
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECC------------CCCCHHHHH
T ss_conf             58888630689645423456655568877899999997189844210015898579899------------999999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999852
Q gi|254780397|r  323 SALKIAAQLGYQK  335 (343)
Q Consensus       323 ~ai~~a~~~~~~~  335 (343)
                      +++.+|+.+.+..
T Consensus       264 n~i~lA~~~v~~~  276 (279)
T 1yco_A          264 HSLRFAMRQVHHH  276 (279)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999997642


No 11 
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=97.79  E-value=3.6e-05  Score=50.14  Aligned_cols=84  Identities=23%  Similarity=0.213  Sum_probs=57.3

Q ss_pred             CCCCCCCCCHHHEECC--CCCCCCEEEEE-EC-----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCC
Q ss_conf             7643455511210002--23667689998-51-----2022555541447727999208764755887552221336866
Q gi|254780397|r  245 KNIIGPLPADSMFHHS--ARQCYDVAICM-YH-----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLT  316 (343)
Q Consensus       245 ~~v~GP~paDt~F~~~--~~~~~D~vlam-YH-----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a  316 (343)
                      +.++- .-.|++-..-  .-.+||++|+. ++     |++-.-.=.+++--+.|+  |-..--.-|-||||.||||||+|
T Consensus       266 I~~~~-~~vD~~~~~Lv~~P~~fDViv~~NlfGDIlSDlaa~l~GslGl~pSani--g~~~a~fEp~HGSApdiaGk~iA  342 (409)
T 2e0c_A          266 IILND-RIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANI--GDEGGMFEAIHGTAPKYAGKNVA  342 (409)
T ss_dssp             EEEEE-EEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEE--ETTEEEEEESSCCCGGGTTTTCS
T ss_pred             EEEEH-HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCEEEECCCCCHHHHCCCCCC
T ss_conf             89838-8799999998329766734432011117888899886088763542214--79863875898862564799876


Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             838999999999999
Q gi|254780397|r  317 QEESLVSALKIAAQL  331 (343)
Q Consensus       317 ~~~s~~~ai~~a~~~  331 (343)
                      ||.+|+-|.-+-++-
T Consensus       343 NP~a~IlS~ammL~~  357 (409)
T 2e0c_A          343 NPTGIIKAGELMLRW  357 (409)
T ss_dssp             CTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             909999999999998


No 12 
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=97.59  E-value=5.8e-05  Score=48.89  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             CHHHEEC--CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf             1121000--22366768999--8512----02255554144772799920876475588755222133686683899999
Q gi|254780397|r  253 ADSMFHH--SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSA  324 (343)
Q Consensus       253 aDt~F~~--~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~a  324 (343)
                      .|.+-.+  ..-.+||++|+  ||=|    ++-.-.=.++.--+.|+--+-.+----|-||||.||||||+|||.+++-|
T Consensus       286 vD~~~~~lv~~P~~FDVivt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~a~fEp~HGSAPdiAGk~iANP~a~IlS  365 (423)
T 1hqs_A          286 ADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLDKVNPSSVILS  365 (423)
T ss_dssp             HHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTCCEEEEESCCCCGGGTTTTCSCCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCHHHHHHH
T ss_conf             99999998649422777501321105787899987089888753016999984798679886266569986597999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780397|r  325 LKIAAQL  331 (343)
Q Consensus       325 i~~a~~~  331 (343)
                      .-+-++.
T Consensus       366 ~amML~~  372 (423)
T 1hqs_A          366 GVLLLEH  372 (423)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999998


No 13 
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=97.37  E-value=0.00024  Score=45.25  Aligned_cols=136  Identities=16%  Similarity=0.295  Sum_probs=77.8

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHE
Q ss_conf             20102456788898999998531345670799963665445--310000121024458886421587643-455511210
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGE--NATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMF  257 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE--~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F  257 (343)
                      +.+|++...+-++...+.-++. +  ++|+-++ -....=+  .|++        .-+.++..++--+|. -..-.|++-
T Consensus       158 ~~~Tr~~~eRI~r~AFe~Ar~~-~--rkkvt~v-~Kanv~~~s~glf--------~~~~~eva~eypdi~~~~~~vD~~a  225 (354)
T 3blx_B          158 KLITRDASERVIRYAFEYARAI-G--RPRVIVV-HKSTIQRLADGLF--------VNVAKELSKEYPDLTLETELIDNSV  225 (354)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHT-T--CSEEEEE-ESCTTTCHHHHHH--------HHHHHHHGGGCTTSEEEEEEHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHHHH-C--CCCCEEE-ECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCHHHEEHHHH
T ss_conf             5786116889999989999973-8--9973378-6255301308999--------9999999987687621020241677


Q ss_pred             ECC--CCCCCC--EEEE--EECCHHHHHH------HHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHH
Q ss_conf             002--236676--8999--8512022555------541447727999208764755887552221336866838999999
Q gi|254780397|r  258 HHS--ARQCYD--VAIC--MYHDQALIPI------KTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSAL  325 (343)
Q Consensus       258 ~~~--~~~~~D--~vla--mYHDQglip~------K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai  325 (343)
                      ..-  +-.+||  ++|+  ||=|= |.-+      =.+..--+.|  +|-.+----|-||+|-||||||+|||.+|+.|.
T Consensus       226 ~~lv~~P~~fD~~Viv~~NlfGDI-lSDl~a~l~~G~~g~~~s~~--~g~~~~~fEp~HGSApdiaGk~iaNP~a~IlS~  302 (354)
T 3blx_B          226 LKVVTNPSAYTDAVSVCPNLYGDI-LSDLNSGLSAGSLGLTPSAN--IGHKISIFEAVHGSAPDIAGQDKANPTALLLSS  302 (354)
T ss_dssp             HHHHHCGGGGTTEEEEECHHHHHH-HHHHHHHHHTSSGGGCEEEE--EESSCEEEEECSCCCGGGTTTTCCCTHHHHHHH
T ss_pred             HHHHCCHHHHCCCEEECCCHHHHH-HHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHH
T ss_conf             775029877265345324046788-88887651267544344433--333322247777762543699863919999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780397|r  326 KIAAQL  331 (343)
Q Consensus       326 ~~a~~~  331 (343)
                      -+-++.
T Consensus       303 amML~~  308 (354)
T 3blx_B          303 VMMLNH  308 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999998


No 14 
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=97.35  E-value=0.00021  Score=45.56  Aligned_cols=136  Identities=14%  Similarity=0.225  Sum_probs=79.1

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf             2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH  259 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~  259 (343)
                      +.+|++.+.+-++...+.-++    .+.|  |....-..   .+.+  + ....-+.++.-++--+| .-..-.|.+...
T Consensus       169 ~~~tr~~~~Ria~~Af~~A~~----~~k~--Vt~v~KaN---v~~~--~-~lf~~~~~eva~~yp~I~~~~~~vD~~~~~  236 (366)
T 1vlc_A          169 MIYDRKTVERIARTAFEIAKN----RRKK--VTSVDKAN---VLYS--S-MLWRKVVNEVAREYPDVELTHIYVDNAAMQ  236 (366)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHT----TTSE--EEEEECTT---TCHH--H-HHHHHHHHHHHTTCTTSEEEEEEHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHHHH----CCCC--EEEEECCC---CCCC--C-HHHHHHHHHHHHHCCCEEEEEEEHHHHHHH
T ss_conf             995689999999999999986----7994--79994477---6443--3-889999999997789808998639899999


Q ss_pred             C--CCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2--2366768999--8512----022555541447727999208764755887552221336866838999999999999
Q gi|254780397|r  260 S--ARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       260 ~--~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      -  .-..||++|+  ||-|    .+..-.=.+++--+.|+  |-+. -.-|-||||.||||||+|||.+|+-|.-+-++-
T Consensus       237 lv~~P~~fdViv~~Nl~GDIlSDlaa~l~GglGl~ps~ni--g~~~-~fEp~HGSApdiaGk~iaNP~a~Ils~ammL~h  313 (366)
T 1vlc_A          237 LILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASF--GDKN-LYEPAGGSAPDIAGKNIANPIAQILSLAMMLEH  313 (366)
T ss_dssp             HHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEE--SSSE-EEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC--CCCE-EECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             8639754778855443301788899986387423554424--8652-210266871242699864939999999999875


No 15 
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=97.30  E-value=0.00035  Score=44.20  Aligned_cols=138  Identities=9%  Similarity=0.152  Sum_probs=81.1

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHE
Q ss_conf             20102456788898999998531345670799963665445--310000121024458886421587643-455511210
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGE--NATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMF  257 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE--~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F  257 (343)
                      +.+|+..+.+-++...+.-++. +  +.++- +.=-...-+  .|++ +|+.      -+.+.+..-+|. -..-.|++-
T Consensus       152 ~~~tr~~~eRiar~AFe~A~~r-~--~k~vt-~v~KaNvl~~s~glf-~~~~------~e~a~~~yp~v~~~~~~vD~~~  220 (349)
T 3blx_A          152 KVMTRPKTERIARFAFDFAKKY-N--RKSVT-AVHKANIMKLGDGLF-RNII------TEIGQKEYPDIDVSSIIVDNAS  220 (349)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHT-T--CCEEE-EEECTTTSTTHHHHH-HHHH------HHHHHHHCTTSEEEEEEHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHHC-C--CCCEE-EEECCCCCCCCCCHH-HHHH------HHHHHHCCCCCHHHHHHHHHHH
T ss_conf             5764999999999999998862-8--98637-997577652342039-9999------9998742885112366688999


Q ss_pred             ECC--CCCCCCEEEEE------ECCHHHHHHHHHCCCCEEEEEEECCEEEECC-CCCCCHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             002--23667689998------5120225555414477279992087647558-87552221336866838999999999
Q gi|254780397|r  258 HHS--ARQCYDVAICM------YHDQALIPIKTLDFNQTVNITLGLPFVRTSP-DHGTAFDIAGSSLTQEESLVSALKIA  328 (343)
Q Consensus       258 ~~~--~~~~~D~vlam------YHDQglip~K~l~f~~~Vn~t~GLp~irtSp-dHGTafdiagk~~a~~~s~~~ai~~a  328 (343)
                      ..-  .-.+||++|+.      -.|++-.-.-.+++--+.|+--.  .--..| -||||-||||||+|||.+|+.|.-+-
T Consensus       221 ~~lv~~P~~fdVIv~~Nl~GDIlSD~~a~l~G~lGl~psanig~~--~~~fep~~hGsapdiaG~~iaNP~a~ils~amm  298 (349)
T 3blx_A          221 MQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRD--YAVFEPGSRHVGLDIKGQNVANPTAMILSSTLM  298 (349)
T ss_dssp             HHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESS--CEEECCTTTTSCC--CCTTCSCCHHHHHHHHHH
T ss_pred             HHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf             886238766647764225688999999875078777874446887--512544566554223489851949999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780397|r  329 AQL  331 (343)
Q Consensus       329 ~~~  331 (343)
                      ++-
T Consensus       299 L~~  301 (349)
T 3blx_A          299 LNH  301 (349)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             998


No 16 
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=97.20  E-value=0.00056  Score=42.98  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=82.2

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEEC--
Q ss_conf             010245678889899999853134567079996366544531000012102445888642158764345551121000--
Q gi|254780397|r  182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHH--  259 (343)
Q Consensus       182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~--  259 (343)
                      .+|++...+-++...+.-++.   +++-..|--=|=+..-.|++-.+..        +.....+.+ ...-.|++-..  
T Consensus       140 ~~tr~~~eRIar~Af~~A~~r---~~~vt~v~KaNvl~~~~~~~~~~~~--------~~~~~~i~~-~~~~vD~~~~~lv  207 (336)
T 1wpw_A          140 IITRFASERIAKVGLNFALRR---RKKVTCVHKANVMRITDGLFAEACR--------SVLKGKVEY-SEMYVDAAAANLV  207 (336)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTT---TSEEEEEECTTTCTTHHHHHHHHHH--------HHHTTTSEE-EEEEHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHCCCHHHEEEE--------EEECEEEEE-EEEEHHHHHHHHH
T ss_conf             986145649999999999972---9926999777534001330310012--------121105898-5344779999997


Q ss_pred             CCCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             223667689998--5----120225555414477279992087647558875522213368668389999999999999
Q gi|254780397|r  260 SARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLG  332 (343)
Q Consensus       260 ~~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~  332 (343)
                      ..-.+||++|+-  |    .|.+..-+=.++.--+.|+--+  .----|-||||.||||||+|||.+++-|.-+-++..
T Consensus       208 ~~P~~fdViv~~Nl~GDIlSD~~a~l~G~lGl~ps~nig~~--~a~fEp~hGsapdiaGk~iaNP~a~Ils~ammL~~l  284 (336)
T 1wpw_A          208 RNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDK--KALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERM  284 (336)
T ss_dssp             HCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSS--CEEEEESSCCCTTTTTSSCCCTHHHHHHHHHHHHHH
T ss_pred             HCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEECCC--CEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             58986657975428787888999998613466654121898--556303444551126998608099999999999985


No 17 
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8}
Probab=97.19  E-value=0.00041  Score=43.82  Aligned_cols=138  Identities=16%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE
Q ss_conf             201024567888989999985313456707999-63665445310000121024458886421587643-4555112100
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH  258 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~  258 (343)
                      +.+|.....+-++...+.-++. +  +-++-++ ==|=-.--.|+|        .-+.++..++--+|. -.+=.|.+-.
T Consensus       160 k~itr~~seRI~r~AFe~A~~~-~--rkkVt~v~KaNvmk~t~glf--------~~~~~eva~eyPdI~~e~~~VD~~a~  228 (496)
T 2d1c_A          160 KLISWKGSEKIVRFAFELARAE-G--RKKVHCATKSNIMKLAEGTL--------KRAFEQVAQEYPDIEAVHIIVDNAAH  228 (496)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHT-T--CCEEEEEECTTTCTTHHHHH--------HHHHHHHHTTCTTSEEEEEEHHHHHH
T ss_pred             CEEECCCHHHHHHHHHHHHHHC-C--CCCEEEEECCCHHHHHHHHH--------HHHHHHHHHHCCCEEEEECHHHHHHH
T ss_conf             1152011456778999999864-9--98337751344011225899--------99999998567965998550558999


Q ss_pred             C--CCCCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             0--22366768999--851----202255554144772799920876475588755222133686683899999999999
Q gi|254780397|r  259 H--SARQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       259 ~--~~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~  330 (343)
                      .  ..-.+||++|+  ||=    |.+-.-.=.++.--+.|+.  --+----|-||||-||||||+|||.+|+.|.-+-++
T Consensus       229 ~Lv~~P~~FDVIVt~NlfGDILSDlaa~l~GslGlapSaniG--~~~amFEpvHGSAPdiAGk~iANP~a~IlSaamML~  306 (496)
T 2d1c_A          229 QLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIG--NEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLR  306 (496)
T ss_dssp             HHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEEC--SSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             973195337766214214678888888753874345532017--985577778887234379987591999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780397|r  331 L  331 (343)
Q Consensus       331 ~  331 (343)
                      .
T Consensus       307 h  307 (496)
T 2d1c_A          307 Y  307 (496)
T ss_dssp             H
T ss_pred             H
T ss_conf             8


No 18 
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=97.19  E-value=0.00045  Score=43.56  Aligned_cols=135  Identities=15%  Similarity=0.213  Sum_probs=74.8

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHHEEC
Q ss_conf             01024567888989999985313456707999636654453100001210244588864215--8764345551121000
Q gi|254780397|r  182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSMFHH  259 (343)
Q Consensus       182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~F~~  259 (343)
                      .+|+..+.+..+...+. .+. + ++ ++-++  .-..    .+-.  .+...-+.++.-++  ++.++ ..-.|.+...
T Consensus       161 ~~t~~~~~ri~~~Af~~-a~~-~-~k-~Vt~v--~KaN----v~~~--~~lf~~~~~eva~~yp~i~~~-~~~vD~~~~~  227 (358)
T 1a05_A          161 VYDEDEIRRIAHVAFRA-AQG-R-RK-QLCSV--DKAN----VLET--TRLWREVVTEVARDYPDVRLS-HMYVDNAAMQ  227 (358)
T ss_dssp             EEEHHHHHHHHHHHHHH-HHT-T-TS-EEEEE--ECTT----TCHH--HHHHHHHHHHHGGGCTTSEEE-EEEHHHHHHH
T ss_pred             EECHHHHHHHHHHHHHH-HHH-C-CC-EEEEE--ECCC----CCCH--HHHHHHHHHHHHCCCCCEEEE-EEHHHHHHHH
T ss_conf             97389999999999999-982-7-98-17898--5330----1234--789999999996538966999-7138899999


Q ss_pred             C--CCCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2--2366768999--851----2022555541447727999208764755887552221336866838999999999999
Q gi|254780397|r  260 S--ARQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       260 ~--~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      -  .-.+||++|+  ||=    |.+-.-.=.+++--+.|+.-+  +----|-||||.||||||+|||.+|+-|.-+-++.
T Consensus       228 lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglG~~psanig~~--~a~fEp~hGsapdiaGk~~aNP~a~Ils~ammL~~  305 (358)
T 1a05_A          228 LIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEG--RAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRH  305 (358)
T ss_dssp             HHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEECSS--CEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHH
T ss_pred             HHHCHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCC--CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             8739144778875406788999999885389766541020687--42234567864433699865939999999999974


No 19 
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus}
Probab=97.13  E-value=0.00055  Score=43.04  Aligned_cols=138  Identities=15%  Similarity=0.142  Sum_probs=79.2

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE
Q ss_conf             201024567888989999985313456707999-63665445310000121024458886421587643-4555112100
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH  258 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~  258 (343)
                      +.+|++...+-++...+.-++.   .+.++-++ ==|=----.|+|        .-+.++..++--+|. -..-.|++-.
T Consensus       139 ~~~Tr~~~eRI~r~Afe~A~~r---~rk~vt~v~K~nv~~~~~g~f--------~~~~~e~ak~yp~I~~~~~~vD~~~~  207 (333)
T 1x0l_A          139 AVISKKASERIGRAALRIAEGR---PRKTLHIAHKANVLPLTQGLF--------LDTVKEVAKDFPLVNVQDIIVDNCAM  207 (333)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHTS---TTCEEEEEECTTTCTTHHHHH--------HHHHHHHHTTCTTSEEEEEEHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHHC---CCCCCCCEECCCCCCCCCHHH--------HHHHHHHHCCCCCEEEEEEHHHHHHH
T ss_conf             7620577679999999999976---998875256564451222489--------99999998108853897422679999


Q ss_pred             CC--CCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             02--23667689998--5----1202255554144772799920876475588755222133686683899999999999
Q gi|254780397|r  259 HS--ARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       259 ~~--~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~  330 (343)
                      +-  .-.+||++|+.  |    .|.+.--+=.++.--+.|+--  .+----|-||||.||||||+|||.+|+.|.-+-++
T Consensus       208 ~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GslG~~ps~nig~--~~~~fEp~HGsapdiaGk~iaNP~a~ils~ammL~  285 (333)
T 1x0l_A          208 QLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGD--TTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD  285 (333)
T ss_dssp             HHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECS--SCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHH
T ss_pred             HHHCCCHHCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--CHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             9856903158301574107788999875248877677530085--31233204688522248986695999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780397|r  331 L  331 (343)
Q Consensus       331 ~  331 (343)
                      -
T Consensus       286 ~  286 (333)
T 1x0l_A          286 Y  286 (333)
T ss_dssp             H
T ss_pred             H
T ss_conf             8


No 20 
>1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans} SCOP: c.77.1.1 PDB: 2ayq_A 1v5b_A
Probab=97.06  E-value=0.00066  Score=42.55  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCHHHEECC
Q ss_conf             01024567888989999985313456707999636654453100001210244588864215-87643455511210002
Q gi|254780397|r  182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND-NKNIIGPLPADSMFHHS  260 (343)
Q Consensus       182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~-g~~v~GP~paDt~F~~~  260 (343)
                      .+|...+.+.++...+.-++.    +.|+.++ -..+     .+- -..-+..-+-+-+++- ++.+ ...-.|++...-
T Consensus       161 ~~t~~~~~riar~af~~A~~~----~kkVt~v-~K~n-----v~~-~~~l~~~~~~eva~~yp~i~~-~~~~vD~~~~~l  228 (366)
T 1v53_A          161 AYTREEIERIIEKAFQLAQIR----RKKLASV-DKAN-----VLE-SSRMWREIAEETAKKYPDVEL-SHMLVDSTSMQL  228 (366)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHT----TSEEEEE-ECTT-----TCH-HHHHHHHHHHHHHTTCTTSEE-EEEEHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHC----CCCEEEE-CCCC-----EEC-CCHHHHHHHHHHHHHCCCEEE-EEEECHHHHHHH
T ss_conf             133899999999999999867----9925674-2664-----011-333599999999826897799-998742889998


Q ss_pred             C--CCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2--366768999--851----2022555541447727999208764755887552221336866838999999999999
Q gi|254780397|r  261 A--RQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       261 ~--~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      .  -.+||++|+  ||=    |.+-.-+=.++.--+.|+...-. ----|-||||.||||||+|||.+|+-|.-+-++.
T Consensus       229 v~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~ni~~d~~-a~fEp~HGsApdiaGk~~aNP~a~ilS~ammL~~  306 (366)
T 1v53_A          229 IANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRF-GMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRY  306 (366)
T ss_dssp             HHCGGGCSEEEECHHHHHHHHHHHTTTTSCTTSCEEEEECSSSC-EEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHH
T ss_pred             HHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCC-EEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             31866566452140688899999998627755466426569864-6861577865776699875949999999999986


No 21 
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=97.03  E-value=0.00086  Score=41.86  Aligned_cols=137  Identities=12%  Similarity=0.200  Sum_probs=78.8

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE
Q ss_conf             2010245678889899999853134567079996366544-5310000121024458886421587643-4555112100
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAG-ENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH  258 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAG-E~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~  258 (343)
                      +.+|+..+.+-++...+.-++.   .+ |+-++ -..+.= ..|+        ..-+.++.-++--+|. -..-.|++..
T Consensus       165 ~~~t~~~~~Ri~r~Af~~A~~~---~k-kVt~v-~K~Nilk~~~l--------f~~~~~eva~~yp~i~~~~~~vD~~~~  231 (363)
T 1cnz_A          165 EVYHRFEIERIARIAFESARKR---RR-KVTSI-DKANVLQSSIL--------WREIVNDVAKTYPDVELAHMYIDNATM  231 (363)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHTT---TS-EEEEE-ECTTTCHHHHH--------HHHHHHHHHTTCTTSEEEEEEHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHHC---CC-CEEEE-ECCCCCCCHHH--------HHHHHHHHHCCCCCEEEEEHHHHHHHH
T ss_conf             8863899999999999999967---99-68999-55864431688--------999999986228974885144669999


Q ss_pred             CCC--CCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             022--366768999--85----1202255554144772799920876475588755222133686683899999999999
Q gi|254780397|r  259 HSA--RQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       259 ~~~--~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~  330 (343)
                      .-.  =..||++|+  ||    -|++.--+--+++--+.|+.-. .+---.|-||||.|||||++|||.+|+.|.-+-++
T Consensus       232 ~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~nig~~-~~a~fEp~HGsapdiaGk~~aNP~a~IlS~ammL~  310 (363)
T 1cnz_A          232 QLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQ-GFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLR  310 (363)
T ss_dssp             HHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTT-SCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCEECCC-CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98508666877854532588999999884399765774244698-73686067887300168886693999999999997


Q ss_pred             H
Q ss_conf             9
Q gi|254780397|r  331 L  331 (343)
Q Consensus       331 ~  331 (343)
                      .
T Consensus       311 ~  311 (363)
T 1cnz_A          311 Y  311 (363)
T ss_dssp             H
T ss_pred             H
T ss_conf             4


No 22 
>1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding, oxidoreductase; 2.10A {Thermus thermophilus HB8} SCOP: c.77.1.1 PDB: 1osj_A 1gc8_A 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1gc9_A 1ipd_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=96.95  E-value=0.00086  Score=41.87  Aligned_cols=137  Identities=15%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf             2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH  259 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~  259 (343)
                      +.+|++...+-++...+.-++.    +.++-+  ..-..    .+-.  -+...-+.++..++-.+| .-..-.|.+-..
T Consensus       155 ~~~tr~~~eRi~r~Af~~A~~~----~k~Vt~--v~KaN----v~~~--~~~~~~~~~eva~~yp~i~~~~~~vD~~~~~  222 (345)
T 1g2u_A          155 ERYSKPEVERVARVAFEVARKR----RKHVVS--VDKAN----VLEV--GEFWRKTVEEVGRGYPDVALEHQYVDAMAMH  222 (345)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTT----TSEEEE--EECTT----TCHH--HHHHHHHHHHHHTTCTTSEEEEEEHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHHHHC----CCCEEE--ECCCC----CCCC--CHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
T ss_conf             6873999999999999999975----994577--52656----5555--4578899999854289758985037699998


Q ss_pred             CC--CCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             22--366768999--85----12022555541447727999208764755887552221336866838999999999999
Q gi|254780397|r  260 SA--RQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       260 ~~--~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      -.  =.+||++|+  ||    -|++..-.=.++.--+.|+--+-.  ---|-||||.||||||+|||.+|+.|.-+-++.
T Consensus       223 lv~~P~~fdViv~~Nl~GDIlSDl~a~l~GglGl~~s~nig~~~a--~fEp~HGsApdiaGk~iaNP~a~Ils~ammL~~  300 (345)
T 1g2u_A          223 LVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTP--VFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH  300 (345)
T ss_dssp             HHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSCC--EEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             612876578553141678899999998627866666420378733--124345644450799864969999999999974


No 23 
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=96.89  E-value=0.0014  Score=40.66  Aligned_cols=78  Identities=21%  Similarity=0.246  Sum_probs=52.4

Q ss_pred             CCHHHEEC--CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf             51121000--22366768999--8512----0225555414477279992087647558875522213368668389999
Q gi|254780397|r  252 PADSMFHH--SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVS  323 (343)
Q Consensus       252 paDt~F~~--~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~  323 (343)
                      -+|.+-..  .+=.+||++|+  ||=|    .+-.-.=.++.--+.|+  |--.----|-||||-||||||+|||.+|+-
T Consensus       294 ~vD~~a~~lv~~P~~FDVIv~~NlfGDILSDlaa~l~GslGl~pSani--g~~~a~FEp~HGSAPdiaGk~iANP~A~Il  371 (429)
T 2d4v_A          294 IADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANL--SDTHAIFEATHGTAPDIAGQGKANPSSLIL  371 (429)
T ss_dssp             EHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEE--CSSCEEEECSCCCCTTTTTTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCHHHHH
T ss_conf             999999998439301757741321447899999998604565641102--898757777988752337999649299999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780397|r  324 ALKIAAQL  331 (343)
Q Consensus       324 ai~~a~~~  331 (343)
                      |.-+-++-
T Consensus       372 S~amML~~  379 (429)
T 2d4v_A          372 SAVMMLEH  379 (429)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999998


No 24 
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=96.82  E-value=0.00059  Score=42.84  Aligned_cols=141  Identities=12%  Similarity=0.103  Sum_probs=80.6

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE
Q ss_conf             2010245678889899999853134567079996-3665445310000121024458886421587643-4555112100
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISG-LNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH  258 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~g-LNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~  258 (343)
                      +.+|++.+.+.++...+.-++. +  +.|+-++- =|==..-.|        .-.-+.++..++..++. -..-.|.+..
T Consensus       161 ~~~tr~~~eRiar~Af~~A~~~-~--rk~vt~v~KaNv~~~~~~--------~~~~~~~~va~~~p~i~~~~~~vD~~~~  229 (364)
T 3flk_A          161 SIFTRRGVDRILKYAFDLAEKR-E--RKHVTSATKSNGMAISMP--------YWDKRTEAMAAHYPHVSWDKQHIDILCA  229 (364)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHS-S--SCEEEEEECTTTSTTHHH--------HHHHHHHHHHTTCTTCEEEEEEHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHHH-C--CCCEEEEEECCCCCCCHH--------HHHHHHHHHHCCCCCCCCCEEEHHHHHH
T ss_conf             3454999999999999999986-8--987255674587402076--------8999999860003434322256999999


Q ss_pred             CCC--CCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEEC-CEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             022--3667689998--5----12022555541447727999208-7647558875522213368668389999999999
Q gi|254780397|r  259 HSA--RQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGL-PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAA  329 (343)
Q Consensus       259 ~~~--~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GL-p~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~  329 (343)
                      .-.  -.+||++|+.  |    .|.+-.-.=.++.--++|+.--- -.----|-||||.||||||+|||.+|+-|.-+-+
T Consensus       230 ~lv~~P~~fdViv~~Nl~GDIlSD~aa~l~G~lG~~psanig~~~~~~a~fEp~hGsapdiaGk~iANP~a~Ils~ammL  309 (364)
T 3flk_A          230 RFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALML  309 (364)
T ss_dssp             HHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             98528864553246615888999999987387433675656766454034146677757757998409499999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780397|r  330 QLG  332 (343)
Q Consensus       330 ~~~  332 (343)
                      +..
T Consensus       310 ~~l  312 (364)
T 3flk_A          310 EFL  312 (364)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             983


No 25 
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=96.80  E-value=0.00071  Score=42.37  Aligned_cols=140  Identities=12%  Similarity=0.130  Sum_probs=70.4

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf             2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH  259 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~  259 (343)
                      +.+|+..+.+-++...+.-++.   ++....|-==|=..-=.|+|=        -+.++.-++--++ .-..-.|++-..
T Consensus       149 ~~~t~~~~~RIar~Afe~A~~r---rk~vt~v~Kanv~~~t~glf~--------~~~~eva~~yp~i~~~~~~vD~~~~~  217 (337)
T 1w0d_A          149 SVNTAFGVRRVVADAFERARRR---RKHLTLVHKTNVLTFAGGLWL--------RTVDEVGECYPDVEVAYQHVDAATIH  217 (337)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHT---TSEEEEEECTTTSHHHHHHHH--------HHHHHHHTTCTTSEEEEEEHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHH--------HHHHHHHHHCCCCEEHHHHHHHHHHH
T ss_conf             6132677767789999999848---995699968872145779999--------99999886578734115758799998


Q ss_pred             --CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEEC-CEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             --22366768999--8512----022555541447727999208-76475588755222133686683899999999999
Q gi|254780397|r  260 --SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGL-PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       260 --~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GL-p~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~  330 (343)
                        .+-.+||++|+  ||=|    ++-.-.=.++.--+.|+--.- .+----|-||||.||||||+|||.+|+-|.-+-++
T Consensus       218 lv~~P~~fdViv~~Nl~GDilSDlaa~l~GglGl~psan~g~~~~~~a~fEp~HGsapdiaGk~iaNP~a~ils~ammL~  297 (337)
T 1w0d_A          218 MITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLS  297 (337)
T ss_dssp             HHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGGTTSSCSCCHHHHHHHHHHHH
T ss_pred             HCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             62598537679875156788999998861865325666667431331000356665054469996495999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780397|r  331 L  331 (343)
Q Consensus       331 ~  331 (343)
                      -
T Consensus       298 ~  298 (337)
T 1w0d_A          298 H  298 (337)
T ss_dssp             H
T ss_pred             H
T ss_conf             8


No 26 
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=96.78  E-value=0.0017  Score=40.12  Aligned_cols=77  Identities=25%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             CHHHEEC--CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf             1121000--22366768999--8512----02255554144772799920876475588755222133686683899999
Q gi|254780397|r  253 ADSMFHH--SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSA  324 (343)
Q Consensus       253 aDt~F~~--~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~a  324 (343)
                      .|++-..  .+-.+||++|+  ||=|    .+..-+=.++.--+.|+-  =-+----|-||||-||||||+|||.+++-|
T Consensus       276 vD~~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGl~pSanig--~~~a~FEp~HGSAPdiaGk~iANP~a~IlS  353 (412)
T 2iv0_A          276 ADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG--DGIGVFEPVHGSAPKYAGQNKVNPTAEILT  353 (412)
T ss_dssp             GGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEE--TTEEEEEESSCCCSTTTTSSCSCCHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CCCEEEECCCCCHHHHCCCCCCCCHHHHHH
T ss_conf             789998750187768766205403468888888853887777744468--974321046685155468987695999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780397|r  325 LKIAAQL  331 (343)
Q Consensus       325 i~~a~~~  331 (343)
                      .-+-++.
T Consensus       354 ~amML~~  360 (412)
T 2iv0_A          354 GALMFEY  360 (412)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999998


No 27 
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=96.73  E-value=0.00086  Score=41.88  Aligned_cols=145  Identities=15%  Similarity=0.122  Sum_probs=75.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCH-------HHHHHHHHHHHCCCCC--CC
Q ss_conf             3201024567888989999985313456707999-636654453100001210-------2445888642158764--34
Q gi|254780397|r  180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKN-------IIIPAITYLRNDNKNI--IG  249 (343)
Q Consensus       180 ~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~-------iI~PaI~~~~~~g~~v--~G  249 (343)
                      .+.+|+....+-++...+.-++.   .+.++.++ -=|=...=.|+|-+.=.+       .....-.+..++--++  ++
T Consensus       201 ~~~itr~~~~Ri~r~Af~~A~~r---~rk~vt~v~KaNv~~~t~glf~~~~~eva~~~f~~~~~~~~~~~~~yp~v~~e~  277 (435)
T 1tyo_A          201 VKPISRFATRRLMERALEWALRN---GNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEG  277 (435)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHH---TCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTTCCCTT
T ss_pred             EEEEEHHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf             89975577899999989999864---898089995886100102169999999998775331002577887547767565


Q ss_pred             C-----CCCHHHEEC--CCCCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCC
Q ss_conf             5-----551121000--22366768999--851----2022555541447727999208764755887552221336866
Q gi|254780397|r  250 P-----LPADSMFHH--SARQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLT  316 (343)
Q Consensus       250 P-----~paDt~F~~--~~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a  316 (343)
                      .     .=.|++=..  ..-.+||++|+  ||=    |.+-.-.=.+++--+.|+.-+  +----|-||||.||||||+|
T Consensus       278 ~I~~~~~~vD~~a~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~pSan~g~~--~a~fEpvHGSAPdiaGk~iA  355 (435)
T 1tyo_A          278 KILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDG--IAVAEPVHGTAPKYAGKDLI  355 (435)
T ss_dssp             CEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSS--CEEEEESSCCCGGGTTSSCS
T ss_pred             CEEEEEHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CEEEECCCCCCCCCCCCCCC
T ss_conf             2489653677999998239644757985330367888999887447775567567998--27986898873000699853


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8389999999999
Q gi|254780397|r  317 QEESLVSALKIAA  329 (343)
Q Consensus       317 ~~~s~~~ai~~a~  329 (343)
                      ||.+|+-|.-+-+
T Consensus       356 NPia~IlS~amML  368 (435)
T 1tyo_A          356 NPSAEILSASLLI  368 (435)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9199999999999


No 28 
>3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Probab=96.67  E-value=0.001  Score=41.46  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=48.1

Q ss_pred             CCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             66768999--8512----022555541447727999208764755887552221336866838999999999999
Q gi|254780397|r  263 QCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       263 ~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      .+||++|+  ||=|    .+-.-.=.++.--+.|+  |-..----|-||||-||||||+|||.+|+-|.-+-++.
T Consensus       304 ~~FDViv~~NlfGDILSDlaa~l~GslGl~pSani--g~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~amML~~  376 (427)
T 3dms_A          304 AEYDVIATLNLNGDYISDALAAQVGGIGIAPGANL--SDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRH  376 (427)
T ss_dssp             GGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEE--CSSCEEEEECSCCCGGGTTSSCSCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             55657740343443113466652377531244556--89876987898872344799966909999999999997


No 29 
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=95.66  E-value=0.0023  Score=39.29  Aligned_cols=146  Identities=10%  Similarity=-0.059  Sum_probs=75.5

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHH---HHHHHHHHCCCCCCCCCCCHHHEE
Q ss_conf             01024567888989999985313456707999636654453100001210244---588864215876434555112100
Q gi|254780397|r  182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIII---PAITYLRNDNKNIIGPLPADSMFH  258 (343)
Q Consensus       182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~---PaI~~~~~~g~~v~GP~paDt~F~  258 (343)
                      ..|.+.+.+-.+...+..++.   +++...|.==|==.--+|+|= |....+.   |-++ .....++.. ..-.|.+..
T Consensus       183 ~~t~~~~~ri~r~af~~A~~~---r~kvt~v~KaNv~~~~dglf~-~~~~eva~~~~~~~-~~~~~I~~~-~~~~d~~~~  256 (413)
T 1lwd_A          183 YNTDESISGFAHSCFQYAIQK---KWPLYMSTKNTILKAYDGRFK-DIFQEIFEKHYKTD-FDKYKIWYE-HRLIDDMVA  256 (413)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHH---TCCEEEEECTTTSTTHHHHHH-HHHHHHHHHHTHHH-HHHTTCCEE-EEEHHHHHH
T ss_pred             EEEHHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHH-HHHHHHHHHHHHCC-CCEEEEEEE-HHHHHHHHH
T ss_conf             640038899999999999855---974478860563231334899-99999998730013-430489962-456788878


Q ss_pred             CC-CCCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEE------EECCCCCCCHHHCCCCCCCHHHHHHHH
Q ss_conf             02-2366768999--85----12022555541447727999208764------755887552221336866838999999
Q gi|254780397|r  259 HS-ARQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFV------RTSPDHGTAFDIAGSSLTQEESLVSAL  325 (343)
Q Consensus       259 ~~-~~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~i------rtSpdHGTafdiagk~~a~~~s~~~ai  325 (343)
                      .- ...+||++|+  ||    -|.+-.-.-.+++--+.|+--.-...      =+.||||.|+||||||+|||.+|+-|.
T Consensus       257 ~lv~~~~~dVivt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~~~E~~hgsap~~~ga~diagk~iANP~A~IlS~  336 (413)
T 1lwd_A          257 QVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAW  336 (413)
T ss_dssp             HHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHH
T ss_pred             HHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCHHHHCCCCCCCHHHHHHHH
T ss_conf             74179877199974521257776778753885545543127998722551576862420424540687632879999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999998
Q gi|254780397|r  326 KIAAQLGY  333 (343)
Q Consensus       326 ~~a~~~~~  333 (343)
                      -+.++..-
T Consensus       337 amML~~lg  344 (413)
T 1lwd_A          337 TRGLEHRG  344 (413)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
T ss_conf             99999734


No 30 
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=95.15  E-value=0.0062  Score=36.70  Aligned_cols=69  Identities=10%  Similarity=-0.061  Sum_probs=47.6

Q ss_pred             CCCEEEEEE------CCHHHHHHHHHCCCCEEEEEEECCEE------EECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             676899985------12022555541447727999208764------755887552221336866838999999999999
Q gi|254780397|r  264 CYDVAICMY------HDQALIPIKTLDFNQTVNITLGLPFV------RTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       264 ~~D~vlamY------HDQglip~K~l~f~~~Vn~t~GLp~i------rtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      .++++++.=      -|++-.-+-.+++--++|+.-.-.+.      -|-|+||+|.|+|||++|||.+++-|.-+.++-
T Consensus       279 ~~fviv~~Nl~GDIlSD~~a~~~GslGl~pS~ni~~~~~~~e~Ea~Hgtap~h~~a~~~ag~~~aNP~a~Ils~~mmL~h  358 (427)
T 2qfy_A          279 GGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLK  358 (427)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             76389961442158888988743885522101116887750341531164212533341587766869999999999997


Q ss_pred             H
Q ss_conf             9
Q gi|254780397|r  332 G  332 (343)
Q Consensus       332 ~  332 (343)
                      .
T Consensus       359 ~  359 (427)
T 2qfy_A          359 R  359 (427)
T ss_dssp             H
T ss_pred             H
T ss_conf             5


No 31 
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=94.48  E-value=0.02  Score=33.65  Aligned_cols=69  Identities=16%  Similarity=0.082  Sum_probs=48.7

Q ss_pred             CCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCC------CCCCCHHHHHHHHHHHHH
Q ss_conf             667689998--5----1202255554144772799920876475588755222133------686683899999999999
Q gi|254780397|r  263 QCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG------SSLTQEESLVSALKIAAQ  330 (343)
Q Consensus       263 ~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiag------k~~a~~~s~~~ai~~a~~  330 (343)
                      .+++++++.  |    -|.+-.-.=-+++--+.|+-- -.+.-.-|-||||-||||      ||+|||.+|+-|.-+.++
T Consensus       259 P~~fViv~~Nl~GDILSD~aa~l~GglGl~pSanig~-~~~~~fEp~HGSAPdiaG~~~~~~k~iaNP~a~ils~ammL~  337 (402)
T 2uxq_A          259 EGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSP-YGYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALR  337 (402)
T ss_dssp             CCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECT-TSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCC-CCCEEEECCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9866999636420277776787528877765101378-652243124673220021333188552394999999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780397|r  331 LG  332 (343)
Q Consensus       331 ~~  332 (343)
                      ..
T Consensus       338 hl  339 (402)
T 2uxq_A          338 KR  339 (402)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             74


No 32 
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima MSB8}
Probab=91.77  E-value=0.12  Score=28.96  Aligned_cols=78  Identities=14%  Similarity=-0.022  Sum_probs=53.8

Q ss_pred             HHEECCCCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCC------CCCCCHHHHH
Q ss_conf             21000223667689998--5----1202255554144772799920876475588755222133------6866838999
Q gi|254780397|r  255 SMFHHSARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG------SSLTQEESLV  322 (343)
Q Consensus       255 t~F~~~~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiag------k~~a~~~s~~  322 (343)
                      ++..-..-..||++++.  |    -|++-.-.=.+++--+.|+.-.-+ .-..|-||||-||||      |++|||.+++
T Consensus       249 ~~~~~~~p~~~dVivt~NlfGDIlSDlaa~l~GglGl~psanig~~~~-~~fEp~HGSaPdiag~~~~~gk~~ANP~a~I  327 (399)
T 1zor_A          249 AAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGV-YEFEAAHGTVRRHYYRYLKGEKTSTNPTASI  327 (399)
T ss_dssp             HHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCC-EEEEESSCCCHHHHHHHTTTCCCCCCCHHHH
T ss_pred             HHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCHHHHHHCCCCCCCHHHHH
T ss_conf             997233899875999404345313135665338764244211378776-4331114446510577875577731849999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999998
Q gi|254780397|r  323 SALKIAAQLGY  333 (343)
Q Consensus       323 ~ai~~a~~~~~  333 (343)
                      -|.-+.++-.-
T Consensus       328 LS~ammL~~lg  338 (399)
T 1zor_A          328 FAWTGAIRKRG  338 (399)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999861


No 33 
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=87.62  E-value=0.29  Score=26.70  Aligned_cols=19  Identities=37%  Similarity=0.728  Sum_probs=14.9

Q ss_pred             CCCCEEEECCCCCCCCHHHHH
Q ss_conf             888389971898774789999
Q gi|254780397|r    3 EFLPLILTQGDPAGIGPDISL   23 (343)
Q Consensus         3 k~~pI~IT~GDPaGIGpEIil   23 (343)
                      +.+.|++-.||  ||||||+-
T Consensus        23 ~~p~I~vipGD--GIGpEV~~   41 (409)
T 2e0c_A           23 NKPVILYIEGD--GIGPEITN   41 (409)
T ss_dssp             SSBEEEEECCS--TTHHHHHH
T ss_pred             CCCEEEEECCC--CCHHHHHH
T ss_conf             99889997988--52699999


No 34 
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=84.64  E-value=0.36  Score=26.11  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=18.1

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf             988883899718987747899999
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLK   24 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilK   24 (343)
                      |++.-+|++-.||  ||||||+--
T Consensus         1 Msk~ykI~vipGD--GIGpEv~~~   22 (363)
T 1cnz_A            1 MSKNYHIAVLPGD--GIGPEVMAQ   22 (363)
T ss_dssp             CCCCEEEEEEEES--TTHHHHHHH
T ss_pred             CCCCCEEEEECCC--CCHHHHHHH
T ss_conf             9998659998878--887999999


No 35 
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=84.53  E-value=0.37  Score=26.08  Aligned_cols=20  Identities=40%  Similarity=0.732  Sum_probs=15.7

Q ss_pred             CCCEEEECCCCCCCCHHHHHHH
Q ss_conf             8838997189877478999998
Q gi|254780397|r    4 FLPLILTQGDPAGIGPDISLKA   25 (343)
Q Consensus         4 ~~pI~IT~GDPaGIGpEIilKa   25 (343)
                      |+||++-.||  ||||||+--+
T Consensus         1 mkkI~vipGD--GIGpEV~~a~   20 (358)
T 1a05_A            1 MKKIAIFAGD--GIGPEIVAAA   20 (358)
T ss_dssp             CCEEEEEEES--TTHHHHHHHH
T ss_pred             CCEEEEECCC--CCHHHHHHHH
T ss_conf             9789998978--8879999999


No 36 
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=83.36  E-value=0.44  Score=25.61  Aligned_cols=122  Identities=19%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             CCCEEEECCCCCCCCHHHHHHHH------CC-------------------------CCHHCCCCEEEECC---H------
Q ss_conf             88389971898774789999984------28-------------------------52324898999939---9------
Q gi|254780397|r    4 FLPLILTQGDPAGIGPDISLKAW------AS-------------------------RQITAIPPFIYIGD---V------   43 (343)
Q Consensus         4 ~~pI~IT~GDPaGIGpEIilKal------~~-------------------------~~~~~~~~~viigd---~------   43 (343)
                      |+||++-.||  ||||||+--+.      ..                         .+.-+.+..++.|.   +      
T Consensus         1 M~kI~vipGD--GIGpEV~~~~~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~G~vg~p~~~~~~   78 (337)
T 1w0d_A            1 MSKLAIIAGD--GIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGV   78 (337)
T ss_dssp             CCEEEEEEES--TTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTH
T ss_pred             CCEEEEECCC--CCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC
T ss_conf             9889997888--75399999999999986068669999630520885399375999999985894987887999899887


Q ss_pred             ---HHHHHHHHHCCCCCCEEECCCCHHCC-C--CCCCEEEECCCC-CCCCCCCC--------CC-------CCCCHHHHH
Q ss_conf             ---99999999818997447538610111-2--678537610333-22001355--------31-------000002467
Q gi|254780397|r   44 ---DVLNARAKQLNLSVPLYETDCKNAVS-I--FKKALPIISSPC-GAKIVTGT--------PN-------PQTASSTIA  101 (343)
Q Consensus        44 ---~~l~~~~k~l~~~~~i~~i~~~~~~~-~--~~~~i~i~~~~~-~~~~~~G~--------~s-------~~~g~~~~~  101 (343)
                         ..+-.-.+.+++-.+++.+....... .  ....++++-+.. ......|.        +.       .-+...+-+
T Consensus        79 ~~~~~~l~LR~~ldlyaniRP~r~~~g~~~~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~e~a~~~~~~t~~~~~R  158 (337)
T 1w0d_A           79 LERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRR  158 (337)
T ss_dssp             HHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEEEEECCHHHHHH
T ss_conf             66466589999708761466521368888844577898789871025562005786032589873599986132677767


Q ss_pred             HHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf             78877664301234304432234477764
Q gi|254780397|r  102 NIEKAVSLTLSGQALAIVTNPIAKFLLYQ  130 (343)
Q Consensus       102 sl~~A~~l~~~g~~~alVT~PInK~~l~~  130 (343)
                      -.+.|.+++++.  ..-||. ++|.++.+
T Consensus       159 Iar~Afe~A~~r--rk~vt~-v~Kanv~~  184 (337)
T 1w0d_A          159 VVADAFERARRR--RKHLTL-VHKTNVLT  184 (337)
T ss_dssp             HHHHHHHHHHHT--TSEEEE-EECTTTSH
T ss_pred             HHHHHHHHHHHC--CCCEEE-EECCCCCH
T ss_conf             789999999848--995699-96887214


No 37 
>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=76.45  E-value=1.6  Score=22.23  Aligned_cols=24  Identities=8%  Similarity=0.141  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             888989999985313456707999
Q gi|254780397|r  190 ETSDTVYNAMKKYFGINNPRIAIS  213 (343)
Q Consensus       190 ~ki~~~~~~l~~~~gi~~PkIaV~  213 (343)
                      ..+..+...+++.+..+..+.-|.
T Consensus       185 G~~~y~~~~l~~l~~~~~~~~~i~  208 (332)
T 2bon_A          185 GSVSYIIHGLMRMDTLQPDRCEIR  208 (332)
T ss_dssp             HHHHHHHHHTSCEEEEECEEEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             623677889998740577238999


No 38 
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=74.71  E-value=2.6  Score=20.99  Aligned_cols=21  Identities=14%  Similarity=0.302  Sum_probs=8.6

Q ss_pred             HHHHHHHHHCCCCCEEEECHH
Q ss_conf             887766430123430443223
Q gi|254780397|r  103 IEKAVSLTLSGQALAIVTNPI  123 (343)
Q Consensus       103 l~~A~~l~~~g~~~alVT~PI  123 (343)
                      +..|++...++...-+--+-+
T Consensus       130 ~~~a~~~i~~g~~~~id~~~v  150 (337)
T 2qv7_A          130 IMGALDVIIEGHSTKVDIGKM  150 (337)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEEEEE
T ss_conf             688888774387089878788


No 39 
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=59.86  E-value=2  Score=21.64  Aligned_cols=10  Identities=10%  Similarity=0.321  Sum_probs=5.0

Q ss_pred             CCCCEEEEEE
Q ss_conf             6676899985
Q gi|254780397|r  263 QCYDVAICMY  272 (343)
Q Consensus       263 ~~~D~vlamY  272 (343)
                      .+.|++||.+
T Consensus        80 ~~~D~viA~l   89 (167)
T 1s2d_A           80 SNATCGVFLY   89 (167)
T ss_dssp             HHCSEEEEEE
T ss_pred             HHCCEEEEEE
T ss_conf             8699999995


No 40 
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=59.66  E-value=5.3  Score=19.10  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-----C----CCCCHHHEECC--CCCCCCEEEEE
Q ss_conf             1345670799963665445310000121024458886421587643-----4----55511210002--23667689998
Q gi|254780397|r  203 FGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-----G----PLPADSMFHHS--ARQCYDVAICM  271 (343)
Q Consensus       203 ~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-----G----P~paDt~F~~~--~~~~~D~vlam  271 (343)
                      +..+.|||+|-.=.=|.       .--...+.-|++.+++.|+.++     |    |+.+..+..+.  ...+||+++++
T Consensus         8 ~~~~~~kI~IV~s~~n~-------~It~~l~~~a~~~L~~~g~~~~~i~VPGa~EiP~~~~~~~~~~~~~~~~~d~vIal   80 (157)
T 2i0f_A            8 HEADAPHLLIVEARFYD-------DLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVAL   80 (157)
T ss_dssp             ---CCCEEEEEEECSSH-------HHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEE
T ss_pred             CCCCCCEEEEEECCCCH-------HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             66899989999774888-------99999999999999986997589996607665899999998744036775789998


Q ss_pred             --------ECCHHH-----HHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --------512022-----5555414477279992087647558875522213368668389999999999999852001
Q gi|254780397|r  272 --------YHDQAL-----IPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLC  338 (343)
Q Consensus       272 --------YHDQgl-----ip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~~~  338 (343)
                              +|++-.     -.+--+..+.++-|+.|   |-|..+.--|.+.++...-|-.  .+|..-|++|..-++-.
T Consensus        81 G~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~G---ILT~~n~~QA~~R~~~~~~nkG--~eaA~Aal~mi~l~~~l  155 (157)
T 2i0f_A           81 GTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNG---ILTVENEEQAWVHARREDKDKG--GFAARAALTMIGLRKKF  155 (157)
T ss_dssp             EEEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEEE---EEEESSHHHHHHHHCTTTTCHH--HHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE---EECCCCHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHHHH
T ss_conf             878738883589999999999999972169977999---7068999999998286666768--99999999999999874


No 41 
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=46.01  E-value=15  Score=16.43  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             CCCCC-CCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH
Q ss_conf             58764-34555112100022366768999851202255554144772799920876475588755222133686683899
Q gi|254780397|r  243 DNKNI-IGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL  321 (343)
Q Consensus       243 ~g~~v-~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~  321 (343)
                      -.+.+ .-||-.|.+|.-       -+|+-||.+       -+|.-||-+-+.+-+----.-|++++. ++. .|.-++|
T Consensus       362 P~ih~y~~~~d~~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~  425 (526)
T 3iyk_A          362 PQIHVYSAPWDSDDVFFF-------HCISHHHAN-------ESFFLGFDLSIDLVHYEDLTAHWHALG-AAQ-TAAGRTL  425 (526)
T ss_pred             CCCEEECCCCCCCCEEEE-------EEECCCCCC-------CEEEEEEECCCCEEEEEECCCCCCCCC-CCC-CCCCCCH
T ss_conf             984410688787727899-------852576688-------615887611311245334465443367-762-0578667


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999998
Q gi|254780397|r  322 VSALKIAAQLGY  333 (343)
Q Consensus       322 ~~ai~~a~~~~~  333 (343)
                      .+|.+-=..++.
T Consensus       426 ~~~~~~~~~~~~  437 (526)
T 3iyk_A          426 TEAYREFLNLAI  437 (526)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999985


No 42 
>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=44.89  E-value=11  Score=17.13  Aligned_cols=15  Identities=13%  Similarity=0.313  Sum_probs=6.3

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             102456788898999
Q gi|254780397|r  183 LSTKRIIETSDTVYN  197 (343)
Q Consensus       183 it~~~I~~ki~~~~~  197 (343)
                      ++.+.++++++.+..
T Consensus       112 ~~~~~Ll~~v~~~l~  126 (142)
T 3cg4_A          112 FDNEDLIEKTTFFMG  126 (142)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             999999999999999


No 43 
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=38.89  E-value=18  Score=15.95  Aligned_cols=20  Identities=15%  Similarity=0.074  Sum_probs=13.5

Q ss_pred             CCCCCEEEECHHHHHHHHHH
Q ss_conf             12343044322344777641
Q gi|254780397|r  112 SGQALAIVTNPIAKFLLYQE  131 (343)
Q Consensus       112 ~g~~~alVT~PInK~~l~~a  131 (343)
                      +-.+|.-++-|++-+-+...
T Consensus        99 ~~GAddyl~KP~~~~eL~a~  118 (233)
T 1ys7_A           99 EAGADDYLVKPFVLAELVAR  118 (233)
T ss_dssp             TTTCSEEEESSCCHHHHHHH
T ss_pred             HCCCCEEEECCCCHHHHHHH
T ss_conf             77992999789987999999


No 44 
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=36.94  E-value=13  Score=16.71  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf             9888838997189877478999998428
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLKAWAS   28 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilKal~~   28 (343)
                      |++|+||+|| |=-.+||..++-.++..
T Consensus         1 m~~m~KIlIt-GatG~iG~~l~~~Ll~~   27 (227)
T 3dhn_A            1 MEKVKKIVLI-GASGFVGSALLNEALNR   27 (227)
T ss_dssp             --CCCEEEEE-TCCHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEE-CCCCHHHHHHHHHHHHC
T ss_conf             9999999998-89988999999999978


No 45 
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=36.48  E-value=14  Score=16.55  Aligned_cols=16  Identities=19%  Similarity=0.239  Sum_probs=7.9

Q ss_pred             CCEEEECHHHHHHHHH
Q ss_conf             4304432234477764
Q gi|254780397|r  115 ALAIVTNPIAKFLLYQ  130 (343)
Q Consensus       115 ~~alVT~PInK~~l~~  130 (343)
                      +++.++=|++.+.+..
T Consensus        99 a~~yl~KP~~~~~L~~  114 (133)
T 3nhm_A           99 PDAYLVKPVKPPVLIA  114 (133)
T ss_dssp             CSEEEESSCCHHHHHH
T ss_pred             CCEEEECCCCHHHHHH
T ss_conf             9789989999999999


No 46 
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Probab=36.22  E-value=9.4  Score=17.62  Aligned_cols=151  Identities=18%  Similarity=0.178  Sum_probs=83.0

Q ss_pred             CCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             22112665304531333432010245678889899999853134567079996366544531000012102445888642
Q gi|254780397|r  162 GPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR  241 (343)
Q Consensus       162 ~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~  241 (343)
                      +..||++.+.         ..-+++...+-+.-..+.|.+ .|++.-.|-|.- =|        |.=|   |-=+++.+-
T Consensus        13 ~s~lrI~IV~---------s~~n~~I~~~Ll~~a~~~L~~-~gv~~~~i~v~~-VP--------GA~E---iP~a~~~l~   70 (200)
T 1c41_A           13 GSALRIGIVH---------ARWNETIIEPLLAGTKAKLLA-CGVKESNIVVQS-VP--------GSWE---LPIAVQRLY   70 (200)
T ss_dssp             CSSCCEEEEE---------ECTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEE-ES--------STTH---HHHHHHHHH
T ss_pred             CCCCEEEEEE---------EECCHHHHHHHHHHHHHHHHH-CCCCCCCEEEEE-CC--------CHHH---HHHHHHHHH
T ss_conf             8899999998---------008799999999999999998-699802469999-15--------1989---999999998


Q ss_pred             H-C-------CC-----CCCCCCCCHHHEEC----CCCCCCCEEEEE--------ECCHHHH-----HHHHHCCCCEEEE
Q ss_conf             1-5-------87-----64345551121000----223667689998--------5120225-----5554144772799
Q gi|254780397|r  242 N-D-------NK-----NIIGPLPADSMFHH----SARQCYDVAICM--------YHDQALI-----PIKTLDFNQTVNI  291 (343)
Q Consensus       242 ~-~-------g~-----~v~GP~paDt~F~~----~~~~~~D~vlam--------YHDQgli-----p~K~l~f~~~Vn~  291 (343)
                      + .       |+     +.-|..+.|+.-..    +..++||++++.        +|.+-..     .+--+..+.++-+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~yDaiIaLG~VIkGeT~Hfe~I~~~v~~gL~~lsl~~~~PI  150 (200)
T 1c41_A           71 SASQLQTPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPV  150 (200)
T ss_dssp             HHHHHC------------------------------CCSCCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             73222211222221111112344332111001345432787779998888707871789999999999999971469856


Q ss_pred             EEECCEEEECCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             9208764755887552221336--86683899999999999998520010
Q gi|254780397|r  292 TLGLPFVRTSPDHGTAFDIAGS--SLTQEESLVSALKIAAQLGYQKNLCN  339 (343)
Q Consensus       292 t~GLp~irtSpdHGTafdiagk--~~a~~~s~~~ai~~a~~~~~~~~~~~  339 (343)
                      ..|   |-|....--|++.+|-  |.-|-  =.+|..-|++|+.-|+...
T Consensus       151 ~~G---VLT~~n~eQA~~Rag~~~g~~NK--G~EaA~AaleM~~l~r~~~  195 (200)
T 1c41_A          151 IFG---VLTVLTDDQAKARAGVIEGSHNH--GEDWGLAAVEMGVRRRDWA  195 (200)
T ss_dssp             EEE---EEEESSHHHHHHHTTCSTTCCCH--HHHHHHHHHHHHHHHHHHH
T ss_pred             EEE---ECCCCCHHHHHHHCCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf             998---53679989999872777888756--8999999999999999875


No 47 
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=36.01  E-value=21  Score=15.48  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC------------CCCCCEE---EEEC
Q ss_conf             664301234304432234477764101325647899998342358866521123------------3221126---6530
Q gi|254780397|r  107 VSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML------------SGPQLRT---VPVT  171 (343)
Q Consensus       107 ~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll------------~~~~L~V---~l~T  171 (343)
                      .++.+.-.++++|+|-|.=.          .|-+|....|..- +.  .+++.|            ....+++   +-.+
T Consensus        83 ~~~l~~~~v~~iv~Gdi~~~----------~~~~~~e~~~~~~-gl--~~~~PLW~~d~~~ll~e~i~~G~~aiiv~v~~  149 (227)
T 2d13_A           83 KNVLEGLKVDGIVAGALASR----------YQKERIENVAREL-GL--KVYTPAWEKDPYQYMLEIIKLGFKVVFVAVSA  149 (227)
T ss_dssp             HHHHHTBCCSEEECCCSSCH----------HHHHHHHHHHHHH-TC--EEECTTTTCCHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHHHCCCEEEEEEEEEH----------HHHHHHHHHHHHC-CC--EEECCCCCCCHHHHHHHHHHCCCEEEEEEECC
T ss_conf             99999717560786237628----------8999999999874-98--88733248877999999998799099999745


Q ss_pred             CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             453133343201024567888989999985313456707999636654453100
Q gi|254780397|r  172 IHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATI  225 (343)
Q Consensus       172 tHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~  225 (343)
                      ..++=.-+-+.++++.+.+-..     +.+..          |.|| |||||.+
T Consensus       150 ~~L~~~~lGr~l~~~~~~~L~~-----l~~~~----------gidp-~GE~GEf  187 (227)
T 2d13_A          150 YGLNESWLGRELNYKNLEELKK-----LSEKY----------GIHI-AGEGGEF  187 (227)
T ss_dssp             TTCCGGGTTCBCCHHHHHHHHH-----HHHHH----------CCCT-TCGGGTE
T ss_pred             CCCCHHHCCCCCCHHHHHHHHH-----HHHHC----------CCCC-CCCCCEE
T ss_conf             8999689177334978999999-----99874----------9776-6777427


No 48 
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=35.60  E-value=22  Score=15.44  Aligned_cols=49  Identities=18%  Similarity=0.207  Sum_probs=29.8

Q ss_pred             CCCCC-CEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEE-CCHHHHHHHHHHCC
Q ss_conf             98888-38997189877478999998428523248989999-39999999999818
Q gi|254780397|r    1 MDEFL-PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYI-GDVDVLNARAKQLN   54 (343)
Q Consensus         1 M~k~~-pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~vii-gd~~~l~~~~k~l~   54 (343)
                      |++++ |+++..|=-.|||-+|..+....     .++.++. -+.+.++...+.++
T Consensus         1 M~kL~GKvalITG~s~GIG~aia~~la~~-----Ga~V~i~~r~~~~l~~~~~~~~   51 (263)
T 2a4k_A            1 MGRLSGKTILVTGAASGIGRAALDLFARE-----GASLVAVDREERLLAEAVAALE   51 (263)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHTCC
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHCC
T ss_conf             98879988999488868999999999987-----9989999798899999999738


No 49 
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=34.32  E-value=23  Score=15.32  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=45.2

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7899998342358866521123322112665304531333432010245678889899999853134
Q gi|254780397|r  139 TEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGI  205 (343)
Q Consensus       139 TE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi  205 (343)
                      ++.+.++...+.+....++|++-=++=+...+.|.+||.|+-.. +--.+-+.+--+....|+.||.
T Consensus        66 ~d~~~~lL~~N~FSL~~P~~~~Gld~~kn~VlhtR~pL~el~~~-~~~~~FE~~i~~a~~i~~~f~~  131 (132)
T 1s28_A           66 SNACQSLLRLNEFNLRTPFFTVGLNEKKDGVVHTRIPLLNLDNV-EMRRVFEALLNLSGEVKKTFGF  131 (132)
T ss_dssp             HHHHHHHHTTTCCCCCSSCCEEEECTTSEEEEEEEEECTTCCHH-HHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCHHHCCCH-HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             78999999815655468669987558764589831575661418-8999999998777778775066


No 50 
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=33.77  E-value=23  Score=15.26  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=26.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH----CCCCCCHHHHHHHH
Q ss_conf             002467788776643012343044322344777641----01325647899998
Q gi|254780397|r   96 ASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQE----KFKFPGHTEFLAEL  145 (343)
Q Consensus        96 g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~a----G~~f~GhTE~La~~  145 (343)
                      .....+.+..+.+  ..+-+.++++||.-   +..+    |.++++|..+..++
T Consensus        94 ~~~l~~~l~~~~~--~~k~i~aiC~G~~~---La~aGlL~gr~~T~~~~~~~~l  142 (190)
T 2vrn_A           94 EEGAMKFVRDMYD--AGKPIAAICHGPWS---LSETGIAQGLKMTSWSSLKREL  142 (190)
T ss_dssp             CHHHHHHHHHHHH--TTCCEEEC-CTTHH---HHHTTTTTTCEECCCGGGHHHH
T ss_pred             CHHHHHHHHHHHH--CCCCCCCCCHHHHH---HHHCCCCCCCEEEECCCHHHHH
T ss_conf             8899999999875--27740033428999---9977987798598474289999


No 51 
>1dpt_A D-dopachrome tautomerase; cytokine, growth factor; 1.54A {Homo sapiens} SCOP: d.80.1.3
Probab=32.34  E-value=24  Score=15.12  Aligned_cols=84  Identities=17%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCC-----HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             5647899998342358866521123322112665304531-----33343201024567888989999985313456707
Q gi|254780397|r  136 PGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIP-----IADICRILSTKRIIETSDTVYNAMKKYFGINNPRI  210 (343)
Q Consensus       136 ~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiP-----Lk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkI  210 (343)
                      ..-++.+++..++.    +..+|.....+-+..+-.++-|     |+.+-...+.+.-.+-...+.+.+.+.+||+.=||
T Consensus        20 ~~ls~~la~~lgKp----e~~vmV~v~~~~~m~fgGs~eP~a~~~l~sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~Ri   95 (117)
T 1dpt_A           20 KRLCAAAASILGKP----ADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRI   95 (117)
T ss_dssp             HHHHHHHHHHHCSC----GGGCEEEEECSCCCCBTTBCSSCEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred             HHHHHHHHHHHCCC----HHHEEEEEECCEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             99999999987979----79989998421479975999978999999955868666779999999999998709796759


Q ss_pred             EEEEE--CCC-CCCCC
Q ss_conf             99963--665-44531
Q gi|254780397|r  211 AISGL--NPH-AGENA  223 (343)
Q Consensus       211 aV~gL--NPH-AGE~G  223 (343)
                      -+.=-  +|| -|=||
T Consensus        96 yI~f~~~~~~~~G~nG  111 (117)
T 1dpt_A           96 LIRFFPLESWQIGKIG  111 (117)
T ss_dssp             EEEEEEECGGGCEETT
T ss_pred             EEEEEECCHHHCCCCC
T ss_conf             9999978999930687


No 52 
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=32.03  E-value=25  Score=15.09  Aligned_cols=54  Identities=17%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEEC
Q ss_conf             07999636654453100001210244588864215876434555112100022366768999851
Q gi|254780397|r  209 RIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYH  273 (343)
Q Consensus       209 kIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYH  273 (343)
                      .+.=+|+-|+-|+.         .=.-|++.+++.|++++|=.|-.  +......++|.||+|=.
T Consensus        51 ~v~SAG~~~~~G~~---------~~~~a~~vL~e~Gid~s~h~s~~--l~~~~~~~aDlIl~M~~  104 (167)
T 2fek_A           51 KVESAGLGALVGKG---------ADPTAISVAAEHQLSLEGHCARQ--ISRRLCRNYDLILTMEK  104 (167)
T ss_dssp             EEEEEETTCCTTCC---------CCHHHHHHHHHTTCCCTTCCCCB--CCHHHHHHSSEEEESCH
T ss_pred             EEEEEECCCCCCCC---------CCHHHHHHHHHCCCCCCCCCCCC--CCHHHHCCCCEEEEECH
T ss_conf             48850413678998---------88269999998399853344565--82877156999999588


No 53 
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=29.95  E-value=24  Score=15.12  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf             9888838997189877478999998428
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLKAWAS   28 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilKal~~   28 (343)
                      |++|++|+||=| -.=||..++-..+..
T Consensus         1 m~~~k~ILITG~-tGfiG~~l~~~Ll~~   27 (348)
T 1oc2_A            1 MSQFKNIIVTGG-AGFIGSNFVHYVYNN   27 (348)
T ss_dssp             --CCSEEEEETT-TSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECC-CCHHHHHHHHHHHHC
T ss_conf             999988999478-868999999999977


No 54 
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen synthase two rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=29.13  E-value=28  Score=14.79  Aligned_cols=110  Identities=16%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECC--HHHHHHHHH
Q ss_conf             567079996366544531000012102445888642158764345551121000223667689998512--022555541
Q gi|254780397|r  206 NNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHD--QALIPIKTL  283 (343)
Q Consensus       206 ~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHD--Qglip~K~l  283 (343)
                      ++-++.+.|-          |.++.+...-.+.+....-+.+.|+.+.+.+  ...+...|++|.-++.  +++..+.++
T Consensus        69 ~~~~l~ivG~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~adi~v~ps~~E~~~~~~~EAm  136 (200)
T 2bfw_A           69 QEMRFIIIGK----------GDPELEGWARSLEEKHGNVKVITEMLSREFV--RELYGSVDFVIIPSYFEPFGLVALEAM  136 (200)
T ss_dssp             GGEEEEEECC----------BCHHHHHHHHHHHHHCTTEEEECSCCCHHHH--HHHHTTCSEEEECCSCCSSCHHHHHHH
T ss_pred             CCEEEEEEEC----------CCHHHHHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHCCCCCEECCCCCCCCHHHHHHH
T ss_conf             9869999836----------9789999999999868993899830798999--998750476240567678986899999


Q ss_pred             CCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             447727999208764755887552221336866838999999999999
Q gi|254780397|r  284 DFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       284 ~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      +.+.-| ++--.+-.+--++|++++=.-   --|+.+|.+++.-+.++
T Consensus       137 a~G~pv-i~~~~~g~~e~i~~~~g~l~~---~~~~~~la~~i~~~l~~  180 (200)
T 2bfw_A          137 CLGAIP-IASAVGGLRDIITNETGILVK---AGDPGELANAILKALEL  180 (200)
T ss_dssp             HTTCEE-EEESCHHHHHHCCTTTCEEEC---TTCHHHHHHHHHHHHHC
T ss_pred             HCCCCE-EEECCCCCCEEEECCCEEEEC---CCCHHHHHHHHHHHHHC
T ss_conf             889849-996499871478588579977---99999999999999957


No 55 
>1zgg_A Putative low molecular weight protein-tyrosine- phosphatase YWLE; alpha/beta, four-stranded parallel beta sheet, structural genomics; NMR {Bacillus subtilis}
Probab=29.03  E-value=17  Score=15.99  Aligned_cols=78  Identities=13%  Similarity=0.233  Sum_probs=42.3

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHE
Q ss_conf             34320102456788898999998531345670799963665445310000121024458886421587643455511210
Q gi|254780397|r  178 DICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMF  257 (343)
Q Consensus       178 ~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F  257 (343)
                      .++++--.+.|.+..      +.+ -|. .-.+.=+|+-++-|         ...--.|++.+++.|+++.+- +. - +
T Consensus        10 N~cRSpmAE~i~~~~------~~~-~g~-~~~v~SAG~~~~~~---------~~~~p~a~~~l~~~gi~~~h~-~~-~-l   69 (150)
T 1zgg_A           10 NTCRSPMAEALFKSI------AER-EGL-NVNVRSAGVFASPN---------GKATPHAVEALFEKHIALNHV-SS-P-L   69 (150)
T ss_dssp             STTTHHHHHHHHHHH------HHH-HTC-CCEEEEEBTTCCTT---------CBCCTTHHHHHHHTTSCCCCB-CC-B-C
T ss_pred             CHHHHHHHHHHHHHH------HHH-CCC-CEEEEECCCCCCCC---------CCCCHHHHHHHHHCCCCCCCC-CC-C-C
T ss_conf             548999999999999------997-699-72787544202478---------878879999999709872234-32-1-2


Q ss_pred             ECCCCCCCCEEEEEECCH
Q ss_conf             002236676899985120
Q gi|254780397|r  258 HHSARQCYDVAICMYHDQ  275 (343)
Q Consensus       258 ~~~~~~~~D~vlamYHDQ  275 (343)
                      ......++|.||+|-..|
T Consensus        70 ~~~~~~~~DlIl~m~~~~   87 (150)
T 1zgg_A           70 TEELMESADLVLAMTHQH   87 (150)
T ss_dssp             CHHHHHHCSEEEESSHHH
T ss_pred             HHHHHHCCCEEHHCCHHH
T ss_conf             186611058805415769


No 56 
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=27.71  E-value=29  Score=14.64  Aligned_cols=23  Identities=22%  Similarity=0.562  Sum_probs=17.0

Q ss_pred             CCCCCCEEEECCCCCC-CCHHHHHHHHC
Q ss_conf             9888838997189877-47899999842
Q gi|254780397|r    1 MDEFLPLILTQGDPAG-IGPDISLKAWA   27 (343)
Q Consensus         1 M~k~~pI~IT~GDPaG-IGpEIilKal~   27 (343)
                      |+ |++|+|| |  +| ||-.++-.+..
T Consensus         1 M~-m~kiLIt-G--aG~iG~~l~~~L~~   24 (286)
T 3gpi_A            1 MS-LSKILIA-G--CGDLGLELARRLTA   24 (286)
T ss_dssp             -C-CCCEEEE-C--CSHHHHHHHHHHHH
T ss_pred             CC-CCEEEEE-C--CCHHHHHHHHHHHH
T ss_conf             99-7879998-9--45999999999997


No 57 
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=26.77  E-value=25  Score=15.08  Aligned_cols=23  Identities=9%  Similarity=-0.042  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEECH
Q ss_conf             467788776643012343044322
Q gi|254780397|r   99 TIANIEKAVSLTLSGQALAIVTNP  122 (343)
Q Consensus        99 ~~~sl~~A~~l~~~g~~~alVT~P  122 (343)
                      ..+++...++..++ ++|.+|-.-
T Consensus       171 ~v~~~~~~v~~lk~-~~D~II~L~  193 (509)
T 3ive_A          171 EIKWLQRYIDELKG-KVDLTVALI  193 (509)
T ss_dssp             HHHHHHHHHHHHTT-TCSEEEEEE
T ss_pred             HHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             99999999886333-587899975


No 58 
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=26.41  E-value=31  Score=14.50  Aligned_cols=56  Identities=18%  Similarity=0.221  Sum_probs=38.4

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCH
Q ss_conf             0799963665445310000121024458886421587643455511210002236676899985120
Q gi|254780397|r  209 RIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQ  275 (343)
Q Consensus       209 kIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQ  275 (343)
                      .|--+|+-++.|+.-         =..|++.+++.|+++.+=.|-  -+......+||.||+|=..|
T Consensus        55 ~v~SaG~~~~~g~~~---------~~~a~~vl~~~Gid~~~h~sr--~lt~~~~~~aDlIl~Md~~~  110 (168)
T 2wja_A           55 KINSAGVGALVDHAA---------DESAIRVAEKNGLCLKGHRGT--KFTSALARQYDLLLVMEYSH  110 (168)
T ss_dssp             EEEEEETTCCTTCCC---------CHHHHHC---CCCCCTTCCCC--BCCHHHHTTCSEEEESSHHH
T ss_pred             CEEEEEEECCCCCCC---------CHHHHHHHHHHCCCCHHHHHC--CCCHHCCCCCCEEEECCHHH
T ss_conf             658668743689988---------817899999848872056521--34231047789999859889


No 59 
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=25.57  E-value=18  Score=15.93  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=24.5

Q ss_pred             EEEEE-CCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             99963-6654453100001210244588864215
Q gi|254780397|r  211 AISGL-NPHAGENATIGIEEKNIIIPAITYLRND  243 (343)
Q Consensus       211 aV~gL-NPHAGE~G~~G~EE~~iI~PaI~~~~~~  243 (343)
                      +|-|. =|+||| +.++.||.+...-|+..++++
T Consensus        33 ~v~g~~C~~CGE-~i~~~~~~~~~~~a~~af~~~   65 (78)
T 3ga8_A           33 GIHGLYCVHCEE-SIMNKEESDAFMAQVKAFRAS   65 (78)
T ss_dssp             EEEEEEETTTCC-EECCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCC-EEECHHHHHHHHHHHHHHHHH
T ss_conf             757552799987-774799999999999999998


No 60 
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=25.13  E-value=27  Score=14.85  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCH
Q ss_conf             9888838997189877478999998428523248989999399
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDV   43 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~   43 (343)
                      |+++.+++|- | ..-||-|++.|.+....   ...++.+.+.
T Consensus         1 MtkkikVaIi-G-tG~iG~eLl~~lL~~hp---~~ei~av~s~   38 (312)
T 1nvm_B            1 MNQKLKVAII-G-SGNIGTDLMIKVLRNAK---YLEMGAMVGI   38 (312)
T ss_dssp             CCSCEEEEEE-C-CSHHHHHHHHHHHHHCS---SEEEEEEECS
T ss_pred             CCCCCEEEEE-C-CCHHHHHHHHHHHHCCC---CCEEEEEEEC
T ss_conf             9988769998-6-86999999999984599---8689999946


No 61 
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=24.82  E-value=33  Score=14.32  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHH
Q ss_conf             3201024567888989999985313456707999636--6544531000012102445888642158764--34555112
Q gi|254780397|r  180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLN--PHAGENATIGIEEKNIIIPAITYLRNDNKNI--IGPLPADS  255 (343)
Q Consensus       180 ~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLN--PHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v--~GP~paDt  255 (343)
                      ...++.......++.+.+.+.+  ..+..+|+|+||-  |-..+      -...-....++.++++|.+|  .-|+..+.
T Consensus       293 ~~~~N~~~~~~~~~~i~~~l~~--~~~~~~I~IlGlayKp~t~d------~R~Sps~~l~~~L~~~g~~V~~yDP~v~~~  364 (450)
T 3gg2_A          293 VERVNEKQKSILFDKFSTYYKG--NVQGRCVAIWGLSFKPGTDD------MREAPSLVLIEKLLEVGCRVRVYDPVAMKE  364 (450)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTT--CCTTCEEEEECCSSSTTCCC------CTTCHHHHHHHHHHHTTCEEEEECSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--CCCCCCEEEECCCCCCCCHH------HCCCHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             3667899999999999998502--02588200232424897311------125417999999998699589989978878


Q ss_pred             HE---------ECC---CCCCCCEEEEE-ECCHHHHHHHHHCCC
Q ss_conf             10---------002---23667689998-512022555541447
Q gi|254780397|r  256 MF---------HHS---ARQCYDVAICM-YHDQALIPIKTLDFN  286 (343)
Q Consensus       256 ~F---------~~~---~~~~~D~vlam-YHDQglip~K~l~f~  286 (343)
                      .+         ...   ..+++|+++=| -|+|    ||.++|.
T Consensus       365 ~~~~~~~~~~~~~~~~ea~~~aD~iii~t~h~~----f~~~d~~  404 (450)
T 3gg2_A          365 AQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKE----FRMPDWS  404 (450)
T ss_dssp             HHHHHGGGSEECSSHHHHTTTCSCEEECSCCGG----GSSCCHH
T ss_pred             HHHHHCCCEEEECCHHHHHCCCCEEEEECCCHH----HCCCCHH
T ss_conf             999727880773899999706988999039857----5506999


No 62 
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=24.42  E-value=26  Score=14.91  Aligned_cols=49  Identities=20%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             88898999998531345670799963665445310000121024458886421587643
Q gi|254780397|r  190 ETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII  248 (343)
Q Consensus       190 ~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~  248 (343)
                      +.+--+...+.+.+|+.       .|+||--.++.+   |-..|.++|++.-++-+..+
T Consensus        15 Env~Ktq~~~skILgi~-------slsp~v~~n~~f---ey~~mv~~Ire~~~e~i~~F   63 (70)
T 2g7o_A           15 ECVVKTQSSVAKILGIE-------SLSPHVSGNSKF---EYANMVEDIREKVSSEMERF   63 (70)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HTCGGGTTCGGG---CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------HCCHHHCCCCCC---CHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999997320-------136644478754---09999999999999999984


No 63 
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=23.42  E-value=35  Score=14.16  Aligned_cols=74  Identities=16%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE----
Q ss_conf             4789999834235886652112332211266530453133343201024567888989999985313456707999----
Q gi|254780397|r  138 HTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS----  213 (343)
Q Consensus       138 hTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~----  213 (343)
                      --|||.+.+..- +.+ ....--..++.+|..-|..--+     .|-++  -+.|+.+.+.|.+.|++++|+|-|-    
T Consensus        12 Ire~l~k~l~~A-Gis-~IeIeR~~~~i~I~I~tarPG~-----vIGrk--G~~I~~L~~~L~k~~~~~~~~i~l~ae~I   82 (92)
T 1wh9_A           12 LNEFLTRELAED-GYS-GVEVRVTPTRTEIIILATRTQN-----VLGEK--GRRIRELTAVVQKRFGFPEGSVELYAEKV   82 (92)
T ss_dssp             HHHHHHHHTTTT-TEE-EEEEEECSSCEEEEEEESCHHH-----HHCGG--GHHHHHHHHHHHHHHCCCTTSEEEEEEEC
T ss_pred             HHHHHHHHHHHC-CCC-EEEEEECCCCEEEEEEECCCCC-----EECCC--CHHHHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf             999999988768-736-5999987991799999789762-----42347--55399999999999789998289985154


Q ss_pred             ---EECCCCC
Q ss_conf             ---6366544
Q gi|254780397|r  214 ---GLNPHAG  220 (343)
Q Consensus       214 ---gLNPHAG  220 (343)
                         ||+|-+|
T Consensus        83 a~r~l~p~~~   92 (92)
T 1wh9_A           83 ATRGSGPSSG   92 (92)
T ss_dssp             CCSCCCSCCC
T ss_pred             HHCCCCCCCC
T ss_conf             3257885469


No 64 
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=23.39  E-value=35  Score=14.15  Aligned_cols=99  Identities=9%  Similarity=0.063  Sum_probs=52.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHH
Q ss_conf             432010245678889899999853-134567079996366544531000012102445888642158764--34555112
Q gi|254780397|r  179 ICRILSTKRIIETSDTVYNAMKKY-FGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI--IGPLPADS  255 (343)
Q Consensus       179 V~~~it~~~I~~ki~~~~~~l~~~-~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v--~GP~paDt  255 (343)
                      .++.++........+.+.+.+.+. -.+..++|+|+||-=-.+   . .+-..---...++.|+++|.+|  .-|+-.+.
T Consensus       324 ~~r~iN~~~~~~i~~~~~~~~~~~~~~~~~~~I~ilGlafK~~---t-~d~R~Sps~~l~~~L~~~g~~V~iyDP~v~~~  399 (478)
T 3g79_A          324 LARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKD---S-DDARNTPSEPYRDLCLKAGASVMVHDPYVVNY  399 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTT---C-SCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC---C-CCHHCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             1111133442223699999999837875786678986314799---9-74101859999999996889899989965677


Q ss_pred             HEE------CCCCCCCCEEEEE-ECCHHHHHHHHHCC
Q ss_conf             100------0223667689998-51202255554144
Q gi|254780397|r  256 MFH------HSARQCYDVAICM-YHDQALIPIKTLDF  285 (343)
Q Consensus       256 ~F~------~~~~~~~D~vlam-YHDQglip~K~l~f  285 (343)
                      .-.      ....+++|++|-| -|+|    ||.+.+
T Consensus       400 ~~~~~~~~l~~~~~~aD~ivi~t~h~~----f~~l~~  432 (478)
T 3g79_A          400 PGVEISDNLEEVVRNADAIVVLAGHSA----YSSLKA  432 (478)
T ss_dssp             TTBCEESCHHHHHTTCSEEEECSCCHH----HHSCCH
T ss_pred             CCCEECCCHHHHHHCCCEEEEECCCHH----HHCCCH
T ss_conf             897562899999837988999669867----751797


No 65 
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=23.23  E-value=33  Score=14.32  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCHHHEECCCCCCCCEEE--EEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH
Q ss_conf             87643455511210002236676899--9851202255554144772799920876475588755222133686683899
Q gi|254780397|r  244 NKNIIGPLPADSMFHHSARQCYDVAI--CMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL  321 (343)
Q Consensus       244 g~~v~GP~paDt~F~~~~~~~~D~vl--amYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~  321 (343)
                      .+...|.+|.+-+.  ..+...|++|  +.|--.|++++-+++.+.-| ||-..+......+|+.++=+.   ..|+.++
T Consensus       296 ~v~~lG~v~~~el~--~l~~~adi~v~pS~~E~fgl~~lEAma~G~PV-V~s~~~~~~~~~~~~~g~l~~---~~d~~~l  369 (413)
T 2x0d_A          296 HLNSLGKLTLEDYA--DLLKRSSIGISLMISPHPSYPPLEMAHFGLRV-ITNKYENKDLSNWHSNIVSLE---QLNPENI  369 (413)
T ss_dssp             EEEEEESCCHHHHH--HHHHHCCEEECCCSSSSCCSHHHHHHHTTCEE-EEECBTTBCGGGTBTTEEEES---SCSHHHH
T ss_pred             CEEECCCCCHHHHH--HHHHHCCEEEEECCCCCCCHHHHHHHHCCCCE-EEECCCCCCEEEECCCEEEEC---CCCHHHH
T ss_conf             17874887989999--99986789998135678866999999869829-995899820035689479989---9999999


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999999985200
Q gi|254780397|r  322 VSALKIAAQLGYQKNL  337 (343)
Q Consensus       322 ~~ai~~a~~~~~~~~~  337 (343)
                      -++|.-.++...++.+
T Consensus       370 a~~i~~l~~~~~~~~~  385 (413)
T 2x0d_A          370 AETLVELCMSFNNRDV  385 (413)
T ss_dssp             HHHHHHHHHHTC----
T ss_pred             HHHHHHHHCCCCCHHH
T ss_conf             9999999839866999


No 66 
>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens}
Probab=22.24  E-value=20  Score=15.68  Aligned_cols=21  Identities=29%  Similarity=0.142  Sum_probs=14.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             683899999999999998520
Q gi|254780397|r  316 TQEESLVSALKIAAQLGYQKN  336 (343)
Q Consensus       316 a~~~s~~~ai~~a~~~~~~~~  336 (343)
                      |.-.++.+|...|.+...+=+
T Consensus       413 a~g~tl~eA~~~ay~~~~~I~  433 (452)
T 2qk4_A          413 AIRENLISALEEAKKGLAAIK  433 (452)
T ss_dssp             EEESSHHHHHHHHHHHHHHCB
T ss_pred             EECCCHHHHHHHHHHHHHCCC
T ss_conf             987999999999999985478


No 67 
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=21.14  E-value=39  Score=13.88  Aligned_cols=27  Identities=19%  Similarity=0.182  Sum_probs=20.6

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf             9888838997189877478999998428
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLKAWAS   28 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilKal~~   28 (343)
                      |++++||+||= =-.-||..++-.++..
T Consensus         1 m~~k~KILVtG-atG~iG~~l~~~L~~~   27 (313)
T 1qyd_A            1 MDKKSRVLIVG-GTGYIGKRIVNASISL   27 (313)
T ss_dssp             -CCCCCEEEES-TTSTTHHHHHHHHHHT
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHHHHHC
T ss_conf             98999899989-9848999999999978


No 68 
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.95  E-value=40  Score=13.85  Aligned_cols=78  Identities=24%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH----HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             6478999983423588665211233221126653045313334----320102456788898999998531345670799
Q gi|254780397|r  137 GHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADI----CRILSTKRIIETSDTVYNAMKKYFGINNPRIAI  212 (343)
Q Consensus       137 GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V----~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV  212 (343)
                      .-|+.+++..++.    .+.+|.....+.+..+.-+.-|..-+    ...++.+.-.+-...+.+.+.+.+|+..-||-|
T Consensus        22 ~~s~~~a~~lgKp----~~~i~V~v~~~~~m~~ggs~~p~a~~~v~sig~~~~e~n~~~~~~i~~~l~~~Lgi~~~riyi   97 (115)
T 2xcz_A           22 ELSSKLAELLGKP----EKYVMTSLQCGVPMTFSGNTEPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYI   97 (115)
T ss_dssp             HHHHHHHHHHTCC----GGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred             HHHHHHHHHHCCC----HHHEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             9999999987969----899999984598458717899369999999748890568999999999999984959576999


Q ss_pred             E--EECCC
Q ss_conf             9--63665
Q gi|254780397|r  213 S--GLNPH  218 (343)
Q Consensus       213 ~--gLNPH  218 (343)
                      .  -+.||
T Consensus        98 ~f~~~~~~  105 (115)
T 2xcz_A           98 GFEDVPAR  105 (115)
T ss_dssp             EEEECCGG
T ss_pred             EEEECCHH
T ss_conf             99988899


No 69 
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=20.70  E-value=35  Score=14.20  Aligned_cols=17  Identities=12%  Similarity=-0.033  Sum_probs=8.1

Q ss_pred             HHHHHHHHHCCCCCEEE
Q ss_conf             88776643012343044
Q gi|254780397|r  103 IEKAVSLTLSGQALAIV  119 (343)
Q Consensus       103 l~~A~~l~~~g~~~alV  119 (343)
                      .+.|.+.+.....|.++
T Consensus        51 g~~al~~l~~~~~Dlvi   67 (137)
T 2pln_A           51 LEDGEYLMDIRNYDLVM   67 (137)
T ss_dssp             HHHHHHHHHHSCCSEEE
T ss_pred             HHHHHHHHHCCCCCEEE
T ss_conf             99999999728999999


Done!