HHSEARCH alignment of GI: 254780397 and SCOP domain: d1vlca_

Alignment
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]}
Probab=97.47  E-value=7.2e-05  Score=46.91  Aligned_cols=136  Identities=15%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEEC
Q ss_conf             20102456788898999998531345670799963665445310000121024458886421587643-45551121000
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFHH  259 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~~  259 (343)
                      +.+|+..+.+-++...+.-++  +  +.++-++  .-.   |.+. . + ....-+.++.-++--+|. -..-.|.+-..
T Consensus       165 ~~~t~~~~~Riar~Af~~A~~--~--~k~Vt~v--~K~---Nv~~-~-~-~lf~~~~~eva~~yp~I~~~~~~vD~~~~~  232 (362)
T d1vlca_         165 MIYDRKTVERIARTAFEIAKN--R--RKKVTSV--DKA---NVLY-S-S-MLWRKVVNEVAREYPDVELTHIYVDNAAMQ  232 (362)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHT--T--TSEEEEE--ECT---TTCH-H-H-HHHHHHHHHHHTTCTTSEEEEEEHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHHHC--C--CCCEEEE--ECC---CCCC-C-H-HHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
T ss_conf             994347878999999999861--8--9807999--437---7520-1-5-899999999996679869997309899999


Q ss_pred             C--CCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2--2366768999--8512----022555541447727999208764755887552221336866838999999999999
Q gi|254780397|r  260 S--ARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       260 ~--~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
                      -  .-.+||++|+  ||-|    .+..-.=.+++--+.|+  |-.. -.-|-||||.||||||+|||.+|+-|.-+-++-
T Consensus       233 lv~~P~~fdViv~~Nl~GDIlSDl~a~l~GglGl~ps~ni--g~~~-~fE~~HGSApdiaGk~iaNP~a~ils~ammL~~  309 (362)
T d1vlca_         233 LILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASF--GDKN-LYEPAGGSAPDIAGKNIANPIAQILSLAMMLEH  309 (362)
T ss_dssp             HHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEE--SSSE-EEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEE--CCHH-HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9866577758985306666777899998513332101210--4223-231256862010589864809999999999873


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Thermotoga maritima [TaxId: 2336]