RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Length = 334 Score = 305 bits (783), Expect = 7e-84 Identities = 117/332 (35%), Positives = 175/332 (52%), Gaps = 9/332 (2%) Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65 L++T G+PAG+GPD+++ + D +L ARA QLNL + L E Sbjct: 10 RLVITPGEPAGVGPDLAITLAQQDWPV---ELVVCADPALLLARASQLNLPLQLREYQAD 66 Query: 66 N-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124 A++ +L I+ +V G + + + + KA +SG+ A+VT P+ Sbjct: 67 QPAIAQQAGSLTILPVKTAVNVVPGKLDVGNSHYVVETLAKACDGAISGEFAALVTGPVQ 126 Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184 K ++ F GHTEF A+ + + VMML+ +LR T H+P+ + ++ Sbjct: 127 KSIINDAGIPFIGHTEFFADRSH-----CQRVVMMLATEELRVALATTHLPLLAVPGAIT 181 Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244 + E + N +K FGI P+I + GLNPHAGE +G EE + IIPA+ LR Sbjct: 182 QASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTLRQQG 241 Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 N+IGPLPAD++F Q D + MYHDQ L +K F + VNITLGLPF+RTS DH Sbjct: 242 INLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSVDH 301 Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 GTA ++A + S ++AL +A ++ N Sbjct: 302 GTALELAATGTADVGSFITALNLAIKMINNSN 333 >1ptm_A 4-hydroxythreonine-4-phosphate dehydrogenase; crystal strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis, PLP; 1.96A {Escherichia coli} SCOP: c.77.1.3 PDB: 1ps7_A 1ps6_A* 1r8k_A Length = 329 Score = 290 bits (743), Expect = 3e-79 Identities = 109/332 (32%), Positives = 167/332 (50%), Gaps = 9/332 (2%) Query: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60 M + +++T G+PAGIGPD+ ++ + D +L RA L L + L Sbjct: 1 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPV---ELVVCADATLLTNRAAMLGLPLTLR 57 Query: 61 ETDCKN-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIV 119 + A L ++ A + G + + + +A L+G+ A++ Sbjct: 58 PYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALI 117 Query: 120 TNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADI 179 T P+ K ++ F GHTEF E ++ K VMML+ +LR T H+P+ DI Sbjct: 118 TGPVHKGVINDAGIPFTGHTEFFEERSQAK-----KVVMMLATEELRVALATTHLPLRDI 172 Query: 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 ++ + E +++ ++ FGI PRI + GLNPHAGE +G EE + IIP + Sbjct: 173 ADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNE 232 Query: 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVR 299 LR + GPLPAD++F D + MYHDQ L +K F + VNITLGLPF+R Sbjct: 233 LRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIR 292 Query: 300 TSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 TS DHGTA ++AG S ++AL +A ++ Sbjct: 293 TSVDHGTALELAGRGKADVGSFITALNLAIKM 324 >1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} Length = 328 Score = 230 bits (587), Expect = 3e-61 Identities = 119/329 (36%), Positives = 172/329 (52%), Gaps = 10/329 (3%) Query: 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64 L LT G+PAGIGPD+ L S Q P I I +L RA QL L++ L + Sbjct: 3 LRFALTPGEPAGIGPDLCLLLARSAQPH---PLIAIASRTLLQERAGQLGLAIDLKDVSP 59 Query: 65 KN--AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122 L + +P A + G + A+ + + +A L G ++T P Sbjct: 60 AAWPERPAKAGQLYVWDTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGMITAP 119 Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182 + K ++ + F GHTEFLA+L T + VMML+ LR T H+P+ ++ Sbjct: 120 VHKGVINEAGIPFSGHTEFLADL-----THTAQVVMMLATRGLRVALATTHLPLREVADA 174 Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242 +S +R+ + ++ ++ FGI +PRI + GLNPHAGE +G EE +I P + LR Sbjct: 175 ISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLRG 234 Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302 + ++IGPLPAD++F + D + MYHDQ L +K F VN+TLGLP +RTS Sbjct: 235 EGLDLIGPLPADTLFTPKHLEHCDAVLAMYHDQGLPVLKYKGFGAAVNVTLGLPIIRTSV 294 Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQL 331 DHGTA D+AGS SL AL+ A Q+ Sbjct: 295 DHGTALDLAGSGRIDSGSLQVALETAYQM 323 >2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} Length = 330 Score = 218 bits (556), Expect = 1e-57 Identities = 115/328 (35%), Positives = 164/328 (50%), Gaps = 8/328 (2%) Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65 + +T GDPAGIGP+I +KA + + P + + +AK + +V L + Sbjct: 8 TVAITMGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIERV 67 Query: 66 NAVSIFKKALPIISSPC--GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPI 123 + +I P + G Q +++A L L G AI T P+ Sbjct: 68 AEARFAPGIIHVIDEPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPL 127 Query: 124 AKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRIL 183 K L+ +PGHTE LA L M+L +L+ + V+ HI + L Sbjct: 128 NKEALHLAGHNYPGHTELLATLTHSR-----DYAMVLYTDKLKVIHVSTHIALRKFLDTL 182 Query: 184 STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND 243 ST R+ + + K G PRIA++G+NPHAGEN G EE I+ PAIT R Sbjct: 183 STARVETV-IGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDARAK 241 Query: 244 NKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPD 303 ++ GP P D++F + YD+ + MYHDQ IP+K L F VNIT GLPF+RTS D Sbjct: 242 GMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSAD 301 Query: 304 HGTAFDIAGSSLTQEESLVSALKIAAQL 331 HGTAFDIA + + ES+ ++K+A QL Sbjct: 302 HGTAFDIAWTGKAKSESMAVSIKLAMQL 329 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 5e-04 Identities = 37/236 (15%), Positives = 64/236 (27%), Gaps = 101/236 (42%) Query: 18 GPDISLKAWAS--RQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKAL 75 GP SL R+ A P +D +R +P + + + L Sbjct: 381 GPPQSLYGLNLTLRKAKA-PS-----GLD--QSR-------IPF----SERKLKFSNRFL 421 Query: 76 PIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKF 135 P+ +SP + AS I +++ + + + I P+ Y Sbjct: 422 PV-ASP------FHSHLLVPASDLINKDLVKNNVSFNAKDIQI---PV-----Y------ 460 Query: 136 PGHTEFLAELAKKNTG-----------------ITFKPVMMLSGPQLRTVPVTIHI---- 174 T G I PV T HI Sbjct: 461 --DTF---------DGSDLRVLSGSISERIVDCIIRLPV---KWETTTQFKAT-HILDFG 505 Query: 175 P--IADICRILSTKRIIE-TSDTVYNAMKKYFGINNPRIAISG-LNPHAGENATIG 226 P + + + T R + T G+ R+ ++G L+ + G Sbjct: 506 PGGASGLGVL--THRNKDGT------------GV---RVIVAGTLDI--NPDDDYG 542 Score = 38.0 bits (88), Expect = 0.003 Identities = 77/508 (15%), Positives = 131/508 (25%), Gaps = 224/508 (44%) Query: 6 PLILTQGD-------PAGIGPDIS-LKAWASRQITA--------IPP---------FI-Y 39 PL L+ G P S L+ ++ + P F+ Y Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67 Query: 40 IGD----------VDVL-----------------NARAKQLNLSVPLYETDCKNAVSIFK 72 + VL +A A +L K + + Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127 Query: 73 KALPIISSPCG---------------AKIVT-----GTPNP---------QTASSTIANI 103 A + P A++V G + QT + ++ Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187 Query: 104 EKAVSLTLSGQALAIVTNPIAKFLLYQEKFKF----------PGHTEFLAELAKKNTGIT 153 K + TL L + ++ + P ++L + Sbjct: 188 IKFSAETL--SELI--RTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLSI-------- 234 Query: 154 FKPVMMLSGP-----QLRTVPVTIHI----PIADICRILS----------TKRIIETSDT 194 P+ S P QL VT + P ++ L T I +D+ Sbjct: 235 --PI---SCPLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDS 288 Query: 195 ---VYNAMKK------YFG--------------------INN------PRIAISGL---- 215 + +++K + G + N P ++IS L Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348 Query: 216 --------NPHAGENATIGIE----EKNIII--PAI------TYLRNDNKNIIGPLPAD- 254 N H + I KN+++ P LR K P D Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-AKA---PSGLDQ 404 Query: 255 SMFHHSARQCYDVAICM--------YHDQALIP----IKTLDF-NQTVNIT---LGLPFV 298 S S R+ + +H L+P I D V+ + +P V Sbjct: 405 SRIPFSERK---LKFSNRFLPVASPFHSHLLVPASDLINK-DLVKNNVSFNAKDIQIP-V 459 Query: 299 RTSPDHGTAFDIAGSSL-TQEESLVSAL 325 + T FD GS L S+ + Sbjct: 460 -----YDT-FD--GSDLRVLSGSISERI 479 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.7 bits (81), Expect = 0.015 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%) Query: 51 KQLNLSVPLYETDCKNAVSIFKKA 74 K+L S+ LY D A++I KA Sbjct: 23 KKLQASLKLYADDSAPALAI--KA 44 Score = 26.5 bits (57), Expect = 8.3 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 10/25 (40%) Query: 104 EK-AV-----SLTL----SGQALAI 118 EK A+ SL L S ALAI Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42 >3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A* Length = 495 Score = 31.4 bits (70), Expect = 0.29 Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 4/99 (4%) Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182 + + F G EF +K ++ V M G + P + + + Sbjct: 39 VGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYR-VNMPPGAFIAENPQVVALLDGKSFPV 97 Query: 183 LSTKRIIETSDTV---YNAMKKYFGINNPRIAISGLNPH 218 L +E D + Y + G + P Sbjct: 98 LFDVDKVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPK 136 >2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* Length = 280 Score = 30.0 bits (67), Expect = 0.86 Identities = 8/30 (26%), Positives = 14/30 (46%) Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISG 214 K ++E + V + + FGIN + G Sbjct: 235 EKILLEDAAAVVDTLGDRFGINVADVGERG 264 >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102} Length = 228 Score = 27.7 bits (60), Expect = 3.4 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 7/40 (17%) Query: 31 ITAIPPFIYIG-------DVDVLNARAKQLNLSVPLYETD 63 IPPF+ +D+ + A Q+ + L E Sbjct: 9 TRVIPPFVLSNKGELSGFSIDLWRSIATQIGIESKLIEYS 48 >1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A Length = 278 Score = 27.3 bits (60), Expect = 4.9 Identities = 6/32 (18%), Positives = 15/32 (46%) Query: 184 STKRIIETSDTVYNAMKKYFGINNPRIAISGL 215 + +++ V +A+ FGI+ +A + Sbjct: 237 TEHIRFDSAAQVLDAIVNRFGIDLGDLAGRDV 268 >1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5 Length = 284 Score = 26.8 bits (59), Expect = 8.0 Identities = 3/23 (13%), Positives = 11/23 (47%) Query: 184 STKRIIETSDTVYNAMKKYFGIN 206 + + ++Y +++ FG+ Sbjct: 234 VEQVNVPDVPSLYQLLQQQFGLG 256 >3fuq_A BONT/F (neurotoxin type F); botulinum neurotoxin, ganglioside, SV2, receptor binding; 2.10A {Clostridium botulinum} Length = 417 Score = 26.6 bits (58), Expect = 8.5 Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 9/75 (12%) Query: 181 RILSTKRIIETSDTVY-------NAMKKYFGI--NNPRIAISGLNPHAGENATIGIEEKN 231 I +T + +D Y + Y I P I + N+ I + Sbjct: 297 DISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRTSNSNNSLGQIIVMD 356 Query: 232 IIIPAITYLRNDNKN 246 I T +N Sbjct: 357 SIGNNCTMNFQNNNG 371 >1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Score = 26.7 bits (58), Expect = 8.9 Identities = 29/200 (14%), Positives = 44/200 (22%), Gaps = 17/200 (8%) Query: 130 QEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRII 189 E K + L + + SG ++ V + + + Sbjct: 154 IEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGR 213 Query: 190 E--TSDTVYNAMKKYFGINNPRIAISGLNPHAGENAT------IGIEEKNIIIPAITYLR 241 + T N MK G + + T I E+ Sbjct: 214 KSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEA 273 Query: 242 NDNKNI-IGPLPADSMFHHSAR--QCYDVAIC------MYHDQALIPIKTLDFNQTVNIT 292 I I AD +DV D + + NI Sbjct: 274 EAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANIN 333 Query: 293 LGLPFVRTSPDHGTAFDIAG 312 HGTA AG Sbjct: 334 YETGHAIFEATHGTAPKYAG 353 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Length = 127 Score = 26.6 bits (58), Expect = 9.1 Identities = 9/40 (22%), Positives = 18/40 (45%) Query: 173 HIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAI 212 H+ I I ++ +D + + +KK F I+ A+ Sbjct: 3 HMAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAV 42 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,892,647 Number of extensions: 131388 Number of successful extensions: 364 Number of sequences better than 10.0: 1 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 19 Length of query: 343 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 250 Effective length of database: 3,438,538 Effective search space: 859634500 Effective search space used: 859634500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.2 bits)