RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Length = 329 Score = 213 bits (543), Expect = 2e-56 Identities = 108/332 (32%), Positives = 165/332 (49%), Gaps = 9/332 (2%) Query: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60 M + +++T G+PAGIGPD+ ++ + D +L RA L L + L Sbjct: 1 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPV---ELVVCADATLLTNRAAMLGLPLTLR 57 Query: 61 ETDCKN-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIV 119 + A L ++ A + G + + + +A L+G+ A++ Sbjct: 58 PYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALI 117 Query: 120 TNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADI 179 T P+ K ++ F GHTEF + K VMML+ +LR T H+P+ DI Sbjct: 118 TGPVHKGVINDAGIPFTGHTEF-----FEERSQAKKVVMMLATEELRVALATTHLPLRDI 172 Query: 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 ++ + E +++ ++ FGI PRI + GLNPHAGE +G EE + IIP + Sbjct: 173 ADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNE 232 Query: 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVR 299 LR + GPLPAD++F D + MYHDQ L +K F + VNITLGLPF+R Sbjct: 233 LRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIR 292 Query: 300 TSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 TS DHGTA ++AG S ++AL +A ++ Sbjct: 293 TSVDHGTALELAGRGKADVGSFITALNLAIKM 324 >d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Length = 257 Score = 31.5 bits (71), Expect = 0.096 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 11/94 (11%) Query: 72 KKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQ--ALAIVTNPIAKFLLY 129 KKAL ++S GT T I E+ ++ + + A + I + L Sbjct: 1 KKALLVVSF--------GTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQ 52 Query: 130 QEKFKFPGHTEFLAELAKKN-TGITFKPVMMLSG 162 ++ + L +LA + + + + +++G Sbjct: 53 RDGIDIDTPLQALQKLAAQGYQDVAIQSLHIING 86 >d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Score = 29.6 bits (66), Expect = 0.39 Identities = 6/39 (15%), Positives = 13/39 (33%) Query: 228 EEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYD 266 E ++ A+ +L + D+ H + D Sbjct: 6 AEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKD 44 >d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Score = 27.8 bits (61), Expect = 1.4 Identities = 7/36 (19%), Positives = 10/36 (27%) Query: 277 LIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG 312 + + +G HGTA AG Sbjct: 312 ALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAG 347 >d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase {Mycobacterium smegmatis [TaxId: 1772]} Length = 273 Score = 26.9 bits (59), Expect = 2.4 Identities = 6/32 (18%), Positives = 15/32 (46%) Query: 184 STKRIIETSDTVYNAMKKYFGINNPRIAISGL 215 + +++ V +A+ FGI+ +A + Sbjct: 232 TEHIRFDSAAQVLDAIVNRFGIDLGDLAGRDV 263 >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 129 Score = 27.0 bits (59), Expect = 2.7 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 9/104 (8%) Query: 209 RIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVA 268 + ++ + G+N + + K + I R+ + I + M D Sbjct: 9 EVNLAAIPL--GKNVVVKWQGKPVFI------RHRTPHEIQEANSVDMSALK-DPQTDAD 59 Query: 269 ICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG 312 ++ G P HG+ +DI+G Sbjct: 60 RVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISG 103 >d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella typhimurium [TaxId: 90371]} Length = 274 Score = 26.9 bits (59), Expect = 2.8 Identities = 3/23 (13%), Positives = 11/23 (47%) Query: 184 STKRIIETSDTVYNAMKKYFGIN 206 + + ++Y +++ FG+ Sbjct: 232 VEQVNVPDVPSLYQLLQQQFGLG 254 >d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium loti [TaxId: 381]} Length = 270 Score = 26.5 bits (58), Expect = 3.2 Identities = 5/25 (20%), Positives = 12/25 (48%) Query: 184 STKRIIETSDTVYNAMKKYFGINNP 208 + + I T+ + + ++ GI P Sbjct: 230 TEQTEIATAADLADTLQGLLGIIIP 254 >d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 277 Score = 26.2 bits (57), Expect = 4.1 Identities = 2/22 (9%), Positives = 10/22 (45%) Query: 185 TKRIIETSDTVYNAMKKYFGIN 206 +R + + + + ++ F + Sbjct: 238 LQRQLRDVEELLDILQTRFRLR 259 >d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite (Dermatophagoides farinae) [TaxId: 6954]} Length = 131 Score = 25.2 bits (55), Expect = 9.2 Identities = 7/45 (15%), Positives = 13/45 (28%) Query: 266 DVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDI 310 + + +DQ + + N LG F D + Sbjct: 39 TFEVAIENDQYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTV 83 >d1l6pa_ b.1.17.1 (A:) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) {Escherichia coli [TaxId: 562]} Length = 121 Score = 25.0 bits (54), Expect = 10.0 Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 4/78 (5%) Query: 106 AVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAEL----AKKNTGITFKPVMMLS 161 A + L + + LY+++ + +A++ + + + Sbjct: 16 AFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYR 75 Query: 162 GPQLRTVPVTIHIPIADI 179 V + A + Sbjct: 76 DRLTLPVTINQASAGATL 93 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0520 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,257,177 Number of extensions: 57876 Number of successful extensions: 130 Number of sequences better than 10.0: 1 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 15 Length of query: 343 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 257 Effective length of database: 1,226,816 Effective search space: 315291712 Effective search space used: 315291712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.7 bits)