RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(343 letters)
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase
PdxA {Escherichia coli [TaxId: 562]}
Length = 329
Score = 213 bits (543), Expect = 2e-56
Identities = 108/332 (32%), Positives = 165/332 (49%), Gaps = 9/332 (2%)
Query: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60
M + +++T G+PAGIGPD+ ++ + D +L RA L L + L
Sbjct: 1 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPV---ELVVCADATLLTNRAAMLGLPLTLR 57
Query: 61 ETDCKN-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIV 119
+ A L ++ A + G + + + +A L+G+ A++
Sbjct: 58 PYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALI 117
Query: 120 TNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADI 179
T P+ K ++ F GHTEF + K VMML+ +LR T H+P+ DI
Sbjct: 118 TGPVHKGVINDAGIPFTGHTEF-----FEERSQAKKVVMMLATEELRVALATTHLPLRDI 172
Query: 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239
++ + E +++ ++ FGI PRI + GLNPHAGE +G EE + IIP +
Sbjct: 173 ADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNE 232
Query: 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVR 299
LR + GPLPAD++F D + MYHDQ L +K F + VNITLGLPF+R
Sbjct: 233 LRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIR 292
Query: 300 TSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331
TS DHGTA ++AG S ++AL +A ++
Sbjct: 293 TSVDHGTALELAGRGKADVGSFITALNLAIKM 324
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium
[TaxId: 90371]}
Length = 257
Score = 31.5 bits (71), Expect = 0.096
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 72 KKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQ--ALAIVTNPIAKFLLY 129
KKAL ++S GT T I E+ ++ + + A + I + L
Sbjct: 1 KKALLVVSF--------GTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQ 52
Query: 130 QEKFKFPGHTEFLAELAKKN-TGITFKPVMMLSG 162
++ + L +LA + + + + +++G
Sbjct: 53 RDGIDIDTPLQALQKLAAQGYQDVAIQSLHIING 86
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 83
Score = 29.6 bits (66), Expect = 0.39
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 228 EEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYD 266
E ++ A+ +L + D+ H + D
Sbjct: 6 AEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKD 44
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 27.8 bits (61), Expect = 1.4
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 277 LIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG 312
+ + +G HGTA AG
Sbjct: 312 ALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAG 347
>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase
{Mycobacterium smegmatis [TaxId: 1772]}
Length = 273
Score = 26.9 bits (59), Expect = 2.4
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 184 STKRIIETSDTVYNAMKKYFGINNPRIAISGL 215
+ +++ V +A+ FGI+ +A +
Sbjct: 232 TEHIRFDSAAQVLDAIVNRFGIDLGDLAGRDV 263
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial
cytochrome bc1-complex, water-soluble domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 129
Score = 27.0 bits (59), Expect = 2.7
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 9/104 (8%)
Query: 209 RIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVA 268
+ ++ + G+N + + K + I R+ + I + M D
Sbjct: 9 EVNLAAIPL--GKNVVVKWQGKPVFI------RHRTPHEIQEANSVDMSALK-DPQTDAD 59
Query: 269 ICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAG 312
++ G P HG+ +DI+G
Sbjct: 60 RVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISG 103
>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella
typhimurium [TaxId: 90371]}
Length = 274
Score = 26.9 bits (59), Expect = 2.8
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 184 STKRIIETSDTVYNAMKKYFGIN 206
+ + ++Y +++ FG+
Sbjct: 232 VEQVNVPDVPSLYQLLQQQFGLG 254
>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium
loti [TaxId: 381]}
Length = 270
Score = 26.5 bits (58), Expect = 3.2
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 184 STKRIIETSDTVYNAMKKYFGINNP 208
+ + I T+ + + ++ GI P
Sbjct: 230 TEQTEIATAADLADTLQGLLGIIIP 254
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 277
Score = 26.2 bits (57), Expect = 4.1
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 185 TKRIIETSDTVYNAMKKYFGIN 206
+R + + + + ++ F +
Sbjct: 238 LQRQLRDVEELLDILQTRFRLR 259
>d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite
(Dermatophagoides farinae) [TaxId: 6954]}
Length = 131
Score = 25.2 bits (55), Expect = 9.2
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 266 DVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDI 310
+ + +DQ + + N LG F D +
Sbjct: 39 TFEVAIENDQYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTV 83
>d1l6pa_ b.1.17.1 (A:) Thiol:disulfide interchange protein DsbD,
N-terminal domain (DsbD-alpha) {Escherichia coli [TaxId:
562]}
Length = 121
Score = 25.0 bits (54), Expect = 10.0
Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 106 AVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAEL----AKKNTGITFKPVMMLS 161
A + L + + LY+++ + +A++ + + +
Sbjct: 16 AFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYR 75
Query: 162 GPQLRTVPVTIHIPIADI 179
V + A +
Sbjct: 76 DRLTLPVTINQASAGATL 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,257,177
Number of extensions: 57876
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 15
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)