HHsearch alignment for GI: 254780398 and conserved domain: PRK09489
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=98.35 E-value=1.4e-06 Score=61.16 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=87.2
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCC
Q ss_conf 99719899987999758988234677502352-59984255430368878753220012200000001431552133222
Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 (284)
Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~ 118 (284)
T Consensus 189 L~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~~-v~~~f----- 262 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFSE-IKGRF----- 262 (342)
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCC-----
T ss_conf 973783248847860678179999999869997699996889999999998998098868997564456-55678-----
Q ss_pred EEEEECCCHH----HHHHHHHHHHHHH--CCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 0112023224----6788999998520--100000011020334478875301231233234543201332012000110
Q gi|254780398|r 119 IRIIANLPYN----IGTRLLFNWISAD--TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 (284)
Q Consensus 119 ~~vvgNLPYn----Iss~Il~~ll~~~--~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~ 192 (284)
T Consensus 263 D~IvsNPPFH~G~~~~~~i~~~fi~~A~~~L~~gG--~L~iV----ANr~L------pY~--~~L~~~Fg~~~~la~--~ 326 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGG--ELRIV----ANAFL------PYP--DLLDETFGSHEVLAQ--T 326 (342)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEE----ECCCC------CCH--HHHHHHCCCEEEEEC--C
T ss_conf 98996885215752658999999999998612498--89999----81898------968--999986298299802--8
Q ss_pred CEECCCCCCCEEEEE
Q ss_conf 000105787578873
Q gi|254780398|r 193 HVFFPSPKVTSTVIH 207 (284)
Q Consensus 193 ~~F~P~PkVdS~vi~ 207 (284)
T Consensus 327 ~kF----kVy~A~~~ 337 (342)
T PRK09489 327 GRF----KVYRAIMT 337 (342)
T ss_pred CCE----EEEEEECC
T ss_conf 997----99998578