HHsearch alignment for GI: 254780398 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=97.82 E-value=0.00013 Score=49.07 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=83.7
Q ss_pred HHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH
Q ss_conf 899999999719-89998799975898823467750235259984255430368878753220-0122000000014315
Q gi|254780398|r 33 LNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110 (284)
Q Consensus 33 ~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~ 110 (284)
T Consensus 37 drvREalFn~L~~~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L-~ 115 (198)
T PRK10909 37 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFL-A 115 (198)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-H
T ss_conf 889999998757642998799827774688999998799789999789999999999999848886799955699986-2
Q ss_pred HHCCCCCCEEEEECCCHH--HHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHH
Q ss_conf 521332220112023224--67889999985201000000110203344788753
Q gi|254780398|r 111 KFFNISSPIRIIANLPYN--IGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 (284)
Q Consensus 111 ~~~~~~~~~~vvgNLPYn--Iss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~ 163 (284)
T Consensus 116 ~~--~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L---~~~gliiiE~~~~~~l~ 165 (198)
T PRK10909 116 QP--GTPHNVVFVDPPFRKGLLEETINLLEQNGWL---ADDALIYVESEVENGLP 165 (198)
T ss_pred CC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCC---CCCCEEEEEECCCCCCC
T ss_conf 55--9952189989997655599999999988891---89969999954888877