HHsearch alignment for GI: 254780398 and conserved domain: TIGR00080

>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.96  E-value=1.4e-05  Score=55.02  Aligned_cols=149  Identities=17%  Similarity=0.238  Sum_probs=92.3

Q ss_pred             CCCC-CCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHCCCCE---EEEECCCCCCHHHHHHHHHH-----H
Q ss_conf             5841-1239899999999719--8999879997589882346775023525---99842554303688787532-----2
Q gi|254780398|r   25 MGQN-FLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARK---VIVIEKDQQFFPILKDISSQ-----H   93 (284)
Q Consensus        25 lGQn-FL~d~~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~~~~~~---v~aiEiD~~~~~~l~~~~~~-----~   93 (284)
T Consensus        57 ig~~qtiS~p~mvA~m~~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v-~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL  135 (228)
T TIGR00080        57 IGYGQTISAPHMVAKMTEYLENHLKPGAKVLEIGTGSGYQAAVLAEIV-GRDGLVVSIERIPELVEKARRRLKKHHSEQL  135 (228)
T ss_pred             CCCCCEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             256762440789999999888521403556650478558999999987-1397189985357889999987654314440


Q ss_pred             H-CCCCCCHHHHCCCCHHHHCCCCCCE--EEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHH
Q ss_conf             0-0122000000014315521332220--112023224678899999852010000001102033447887530123123
Q gi|254780398|r   94 P-NRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH  170 (284)
Q Consensus        94 ~-~~~~ii~~Dal~~d~~~~~~~~~~~--~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~  170 (284)
T Consensus       136 ~~~NV~v~~GDG~~-G~~~~----APYd~I~~~AA~k~iP~AL~-------------------~QL~eGG~L~~Pv~~~d  191 (228)
T TIGR00080       136 GLDNVIVIEGDGRQ-GWEEK----APYDAILVTAAAKEIPKALI-------------------DQLEEGGILVLPVGEVD  191 (228)
T ss_pred             CCCCEEEEECCCCC-CHHHC----CCCCEEEEECCCCCCCHHHH-------------------HHHHHCCEEEECCEEEC
T ss_conf             68865899778865-71024----88352775237898765789-------------------99972898862000006


Q ss_pred             HHHHHHHHCCCC-CEEEECCCCCCEECCC
Q ss_conf             323454320133-2012000110000105
Q gi|254780398|r  171 YGRLSVLTGWRT-KATMMFDISPHVFFPS  198 (284)
Q Consensus       171 Yg~LSv~~q~~~-~v~~~~~V~~~~F~P~  198 (284)
T Consensus       192 ~~Q~l~~~~k~nn~~~~~k~~E~v~FVPl  220 (228)
T TIGR00080       192 EEQVLKRVEKRNNGEIIIKVVEKVLFVPL  220 (228)
T ss_pred             CCEEEEEEEEECCCEEEEEECCCEEEEEE
T ss_conf             75379999870896067531176677542