HHsearch alignment for GI: 254780398 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=97.28 E-value=0.0003 Score=46.72 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=50.6
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC---C-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 999997198999879997589882346775023---5-----25998425543036887875322001220000000143
Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG---A-----RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~---~-----~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
T Consensus 5 ~~I~~~--Ip~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac---~~--RG-v~VIq~D-ld~G 75 (205)
T TIGR02081 5 ELILDL--IPPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLAC---VA--RG-VSVIQGD-LDEG 75 (205)
T ss_pred HHHHHH--CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHH---HH--CC-CCEECCC-CCCC
T ss_conf 889861--68887364101688789999997437898887120001023454459999---86--25-2013006-0034
Q ss_pred HHHHCCCCCCE
Q ss_conf 15521332220
Q gi|254780398|r 109 FEKFFNISSPI 119 (284)
Q Consensus 109 ~~~~~~~~~~~ 119 (284)
T Consensus 76 L~~F~D~~FD~ 86 (205)
T TIGR02081 76 LEAFPDKSFDY 86 (205)
T ss_pred CCCCCCCCCCE
T ss_conf 01167887662