HHsearch alignment for GI: 254780398 and conserved domain: TIGR02143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=92.77 E-value=0.11 Score=30.89 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=78.5
Q ss_pred CHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCC
Q ss_conf 98999999997----1989998799975898823467750235259984255430368878753220-012200000001
Q gi|254780398|r 32 DLNILKKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106 (284)
Q Consensus 32 d~~i~~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~ 106 (284)
T Consensus 184 Na~vn~kMLeWA~~~~~~~~g~DLLELYCGNGNFsLaLA~~f-~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEE 262 (361)
T TIGR02143 184 NAAVNQKMLEWALEVTQNSKGMDLLELYCGNGNFSLALAQNF-ERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEE 262 (361)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHH
T ss_conf 189999999999998358888720100026753104456533-3455430240247999999871798831010232799
Q ss_pred CCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHH--HHHCCCCCE
Q ss_conf 431552133222011202322467889999985201000000110203344788753012312332345--432013320
Q gi|254780398|r 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS--VLTGWRTKA 184 (284)
Q Consensus 107 ~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LS--v~~q~~~~v 184 (284)
T Consensus 263 f---------------------------------------------------t~A~---~~~R~F~RL~d~gIdL~~Y~f 288 (361)
T TIGR02143 263 F---------------------------------------------------TEAM---NGVREFRRLKDGGIDLKSYNF 288 (361)
T ss_pred H---------------------------------------------------HHHH---CCCCCCCCCCCCCCCCCCCCC
T ss_conf 9---------------------------------------------------9986---037765465668863342025
Q ss_pred EEECCCCCCEECCCCCCCEEEEEECCCCC---CCCCCHHHHH
Q ss_conf 12000110000105787578873012588---5534767899
Q gi|254780398|r 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLK 223 (284)
Q Consensus 185 ~~~~~V~~~~F~P~PkVdS~vi~l~pk~~---~~~~~~~~~~ 223 (284)
T Consensus 289 ~tiFVDPPRa-----GlD~~t~~Lv~~y~rIlYISCNP~TL~ 325 (361)
T TIGR02143 289 NTIFVDPPRA-----GLDPDTVKLVQKYERILYISCNPETLK 325 (361)
T ss_pred CEEEECCCCC-----CCCHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 6026779888-----889899999962598799846968999