HHsearch alignment for GI: 254780398 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.68 E-value=5.2e-08 Score=70.14 Aligned_cols=104 Identities=13% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 3658411239899----------999999719899987999758988234677502352-59984255430368878753
Q gi|254780398|r 23 KYMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 23 k~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~ 91 (284)
T Consensus 54 ~F~~~~f~V~~~VLIPRpETE~Lve~~l~~~~~-~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~ 132 (251)
T TIGR03534 54 EFYGLDFKVSPGVLIPRPDTEELVEAALERLKK-GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAK 132 (251)
T ss_pred EEEEEEEEEECCEEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 898689997188786488339999999997314-8986999556716999999996799789999898799999999999
Q ss_pred HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 220-01220000000143155213322201120232246788
Q gi|254780398|r 92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284)
Q Consensus 92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284)
T Consensus 133 ~~~~~~v~~~~~d~~~~~~~-----~~fDlIvsNPPYI~~~e 169 (251)
T TIGR03534 133 RLGLENVRFLKSDWFEPLPG-----GKFDLIVSNPPYIPEAD 169 (251)
T ss_pred HCCCCEEEEEECCHHHCCCC-----CCCCEEEECCCCCCHHH
T ss_conf 80998268651314321568-----98668997899887456