HHsearch alignment for GI: 254780398 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=100.00 E-value=0 Score=538.26 Aligned_cols=253 Identities=29% Similarity=0.422 Sum_probs=232.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 89843365841123989999999971989998799975898823467750235259984255430368878753220012
Q gi|254780398|r 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 (284)
Q Consensus 18 ~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~ 97 (284)
T Consensus 1 ~~r~kK~lGQnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~L~~~-~~~v~aiE~D~~l~~~L~~~~~~~~-~~ 78 (258)
T pfam00398 1 ANKGRRSYGQNFLTNKKVINRIVDKANLQESDTVLEIGPGKGALTEELAKR-AKQVVAIEIDPRLAKRLQKKLALHP-NV 78 (258)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCC-CE
T ss_conf 998856677531389999999999708999997999799623999999961-6947999544779999998644289-77
Q ss_pred CCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 20000000143155213322201120232246788999998520100000011020334478875301231233234543
Q gi|254780398|r 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 (284)
Q Consensus 98 ~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~ 177 (284)
T Consensus 79 ~ii~~D~l~~d~~~----~~~~~vvgNLPY~Iss~il~~ll~~~~--~~~~~~vlmvQkEvA~Rl~a~pg~k~y~~LSv~ 152 (258)
T pfam00398 79 EVVHQDFLKFSFPK----HEPFLVVGNIPYNITTPIVKKLLFEPR--FGRVKMLLVVQKEFARRLLARPGSKIYSRLTVL 152 (258)
T ss_pred EEEECCHHCCCCCC----CCCEEEEECCCCCCCHHHHHHHHHCCC--CCCCEEEEEEEHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 99966301057545----786168944886341789999997047--672048999889999998558998651368999
Q ss_pred HCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCH---HHHHH
Q ss_conf 20133201200011000010578757887301258855--34767899999999727313899987631817---89997
Q gi|254780398|r 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---NLLHQ 252 (284)
Q Consensus 178 ~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~--~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~---~~l~~ 252 (284)
T Consensus 153 ~q~~~~~~~l~~V~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~~~v~~~F~~RRK~L~n~L~~~~~~~~~~~l~~ 232 (258)
T pfam00398 153 TEPFTDIKLVAKVPRSSFRPPPKVDSALVRLERRDHPLLPVKDLKKYDYLVRKLFNGKGRSLFTSLRRLFPGGQVQALSK 232 (258)
T ss_pred HHHHHEEEEEEEECHHHEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99974051522855141465998747999999898887872349999999999981163789999987388079999998
Q ss_pred CCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 87774657120899999999999863
Q gi|254780398|r 253 AGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 253 ~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
T Consensus 233 ~gi~~~~R~e~Ls~e~~~~L~~~l~k 258 (258)
T pfam00398 233 TRINDNALVGKLSPEQWLTIFKELAK 258 (258)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 77698888615999999999999709