HHsearch alignment for GI: 254780398 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.59 E-value=2.9e-07 Score=65.45 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC
Q ss_conf 39899999999719899987999758988234677502352-599842554303688787532--200122000000014
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV 107 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~ 107 (284)
T Consensus 12 L~~~lAa~l~~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l 91 (171)
T pfam01170 12 LKATLARAMVNLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADL 91 (171)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHC
T ss_conf 88999999999858999997886899878999999996135895367587999999999999828998469997666538
Q ss_pred CHHHHCCCCCCEEEEECCCHHHHH-------HHHHHHHHH--HCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 315521332220112023224678-------899999852--0100000011020334478875301
Q gi|254780398|r 108 DFEKFFNISSPIRIIANLPYNIGT-------RLLFNWISA--DTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 108 d~~~~~~~~~~~~vvgNLPYnIss-------~Il~~ll~~--~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
T Consensus 92 ~~~~----~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~-~g~~~~i~~~~~~~~k~~~~~ 153 (171)
T pfam01170 92 PLLN----GSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVL-RGRLVFATPEKKDFEKAARER 153 (171)
T ss_pred CCCC----CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHCCH
T ss_conf 7987----8831899889820113654569999999999999868-997899996868999985500