HHsearch alignment for GI: 254780398 and conserved domain: pfam02527
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=93.83 E-value=0.16 Score=29.84 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=54.2
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf 987999758988234677502352-59984255430368878753220-0122000000014315521332220112023
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL 125 (284)
T Consensus 49 ~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~~~~~D~-v~aRA~a~l 127 (184)
T pfam02527 49 RIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQHEEQYDV-ITSRAVASL 127 (184)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCE-EEECHHCCH
T ss_conf 9868834798884679999967785599992828999999999998599976999560441464467878-998100579
Q ss_pred CH
Q ss_conf 22
Q gi|254780398|r 126 PY 127 (284)
Q Consensus 126 PY 127 (284)
T Consensus 128 ~~ 129 (184)
T pfam02527 128 NE 129 (184)
T ss_pred HH
T ss_conf 99