HHsearch alignment for GI: 254780398 and conserved domain: smart00650
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=0 Score=386.16 Aligned_cols=169 Identities=37% Similarity=0.605 Sum_probs=157.4
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC
Q ss_conf 99999997198999879997589882346775023525998425543036887875322001220000000143155213
Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~ 114 (284)
T Consensus 1 ii~kIv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~-n~~ii~~D~L~~~~~~~-- 76 (169)
T smart00650 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAAD-NLTVIHGDALKFDLPKL-- 76 (169)
T ss_pred CHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC-CCCCEEECCHHHHHHHHHHHCCCC-CEEEEECCHHCCCCCCC--
T ss_conf 98899886389994979996897029999999731-635316378899999998641079-77999571112553115--
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCE
Q ss_conf 32220112023224678899999852010000001102033447887530123123323454320133201200011000
Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 (284)
Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~ 194 (284)
T Consensus 77 --~~~~iv~NLPY~Iss~il~~ll~~~~---~~~~~~lm~QkEvA~Ri~a~p~~k~y~~LSv~~q~~~~~~~~~~V~~~~ 151 (169)
T smart00650 77 --QPYKVVGNLPYNISTPILFKLLEEPP---AFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEA 151 (169)
T ss_pred --CCCEEEECCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEEEEEEECHHH
T ss_conf --87369934763011899999986265---4126665539999999863789855149999999874078978998665
Q ss_pred ECCCCCCCEEEEEECCCC
Q ss_conf 010578757887301258
Q gi|254780398|r 195 FFPSPKVTSTVIHFIPHL 212 (284)
Q Consensus 195 F~P~PkVdS~vi~l~pk~ 212 (284)
T Consensus 152 F~P~PkVdS~vv~l~pkp 169 (169)
T smart00650 152 FRPPPKVDSAVVRLERRP 169 (169)
T ss_pred CCCCCCCEEEEEEEEECC
T ss_conf 789998408999999793