HHsearch results for GI: 254780398 and protein with PDBid: 1i4w_A
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=100.00 E-value=0 Score=442.86 Aligned_cols=269 Identities=15% Similarity=0.233 Sum_probs=225.7
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC------CCCEEEEECCCCCHHHHHHHHC-CCCEE
Q ss_conf 9778884479999998189843365841123989999999971989------9987999758988234677502-35259
Q gi|254780398|r 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL------DGITVIEIGAGPGNLTQMLLTL-GARKV 73 (284)
Q Consensus 1 ~~~~~~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~------~~~~VlEIGpG~G~LT~~Ll~~-~~~~v 73 (284)
||-..+-.+++++ .+++|++|||||+|++++++|++.+++. .+.+|||||||+|+||+.|+++ +++++
T Consensus 11 ~~~~~~lp~~~~~-----~k~k~~~Gq~fL~d~~l~~kIv~~l~l~~~~~~~~~~~IlEIgPG~G~lT~~Ll~~~~pk~~ 85 (353)
T 1i4w_A 11 MASSVPIPGIKDI-----SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 85 (353)
T ss_dssp -----CCCCCCTT-----CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEE
T ss_pred HHCCCCCCCHHHH-----HHHHHHHCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 5416889981777-----77887635444389999999998736763335778996999899988999999852588769
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC--------------CCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 984255430368878753220012200000001431-5521--------------3322201120232246788999998
Q gi|254780398|r 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF--------------NISSPIRIIANLPYNIGTRLLFNWI 138 (284)
Q Consensus 74 ~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~--------------~~~~~~~vvgNLPYnIss~Il~~ll 138 (284)
++||+|+++++.|++++.. .+++++++|+++++. .++. ..+.++.|||||||||||+|+++|+
T Consensus 86 i~iE~D~~~~~~L~~~~~~--~~~~ii~~D~l~~~~~~~l~~~~~~~~p~~~~~~~~~~~l~vvaNLPynis~~ll~k~l 163 (353)
T 1i4w_A 86 SLLEKRSSLYKFLNAKFEG--SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWL 163 (353)
T ss_dssp EEECCCHHHHHHHHHHTTT--SSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 9997778899999987145--88479946456532156554201234665432113688479999488443699999999
Q ss_pred HHHC-----CCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE---------------------CCCCC
Q ss_conf 5201-----000000110203344788753012312332345432013320120---------------------00110
Q gi|254780398|r 139 SADT-----WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM---------------------FDISP 192 (284)
Q Consensus 139 ~~~~-----~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~---------------------~~V~~ 192 (284)
.... +..+..+|++|+|+|||+||+|+||++.||||||++|++|+++++ +.||+
T Consensus 164 ~~~~~~~~l~~~G~v~m~lm~QkEvAeRi~A~~g~k~y~rlSV~~q~~~dv~~l~~~~~~~~~~f~~~~~~~~~~~~v~~ 243 (353)
T 1i4w_A 164 SCIGNKNWLYRFGKVKMLLWMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSA 243 (353)
T ss_dssp HHHHHTCGGGGGSEEEEEEEEEHHHHHHHHCCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCG
T ss_pred HHCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96513433311364247888529999998447897422199999998731234222553212334544322457766795
Q ss_pred CEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC--HHHHHHCCCC---CCCCHHCCCHH
Q ss_conf 000105787578873012588553476789999999972731389998763181--7899978777---46571208999
Q gi|254780398|r 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIE---TNLRAENLSIE 267 (284)
Q Consensus 193 ~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~--~~~l~~~~i~---~~~R~e~Ls~~ 267 (284)
++|+|+|+|+|+||+++|+..+. +.+.|+.+++.+|.+|||+|+++|+...+ .+.+.....+ +++||++||++
T Consensus 244 ~~f~P~pkv~savv~~~P~~~~~--d~~~~~~vvr~~F~~RRK~l~~~L~~l~pga~~~l~~~~~~~~~l~kRpe~Lt~~ 321 (353)
T 1i4w_A 244 AEIWPTKGKPIALVEMDPIDFDF--DVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLLKKCPIDLTND 321 (353)
T ss_dssp GGBSSCSCCCEEEEEEEECCCCS--CHHHHHHHHHHHHTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTTSSCGGGCCHH
T ss_pred CCCCCCCCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCCCCCHH
T ss_conf 44567999857999965589986--9899999999999871788999998767885899987467843000485679999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999863
Q gi|254780398|r 268 DFCRITNILTD 278 (284)
Q Consensus 268 ~~~~L~~~l~~ 278 (284)
||+.|++.+.+
T Consensus 322 ef~~La~~f~~ 332 (353)
T 1i4w_A 322 EFIYLTKLFME 332 (353)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999981