HHsearch results for GI: 254780398 and protein with PDBid: 1qam_A
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=100.00 E-value=0 Score=474.77 Aligned_cols=238 Identities=22% Similarity=0.314 Sum_probs=212.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 84336584112398999999997198999879997589882346775023525998425543036887875322001220
Q gi|254780398|r 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 (284)
Q Consensus 20 ~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~i 99 (284)
+++|++|||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++++...+ ++++
T Consensus 3 ~~~~k~GQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~~-~~v~avEiD~~l~~~L~~~~~~~~-n~~i 80 (244)
T 1qam_A 3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD-NFQV 80 (244)
T ss_dssp -------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC-SEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHCCCC-CEEE
T ss_conf 99888888414799999999995678999979997388719999998555-830699853017799997414477-6577
Q ss_pred CHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 00000014315521332220112023224678899999852010000001102033447887530123123323454320
Q gi|254780398|r 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 (284)
Q Consensus 100 i~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q 179 (284)
++||||++|+++ ..+++|||||||||||+|+++++... .+..+++|+|||||+||+|+|| +||+++|
T Consensus 81 i~~D~l~~~~~~----~~~~~vv~NLPYnIss~Il~~ll~~~----~~~~~~~mvQkEvA~Rl~a~~g-----~lsv~~~ 147 (244)
T 1qam_A 81 LNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIVFDS----IADEIYLIVEYGFAKRLLNTKR-----SLALFLM 147 (244)
T ss_dssp ECCCGGGCCCCS----SCCCEEEEECCGGGHHHHHHHHHHSC----CCSEEEEEEEHHHHHHHTCTTS-----HHHHHHT
T ss_pred EECHHHCCCCCC----CCCEEEEEECHHHHHHHHHHHHCCCC----CCCEEEEEEEEHHHHHHHCCCC-----CCHHHHH
T ss_conf 300122256544----67547997430552389998750244----3000353310012331230257-----5235532
Q ss_pred CCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCC
Q ss_conf 1332012000110000105787578873012588553-476789999999972731389998763181789997877746
Q gi|254780398|r 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 (284)
Q Consensus 180 ~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~-~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~ 258 (284)
++|+++++++|||+||+|+|||||+||+|+|++.+.. .+.+.|..+++.+|++|||++.+... ..++++.+|++
T Consensus 148 ~~~~~~~~~~V~~~~F~P~PkVdS~vi~l~~k~~~~~~~~~~~~~~~~~~~F~~rrK~l~~~~~---~~~~l~~~gi~-- 222 (244)
T 1qam_A 148 AEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQ---FNNSLKHAGID-- 222 (244)
T ss_dssp TTEEEEEEEEECGGGSBSCCSSCEEEEEEEECCCSSCGGGHHHHHHHHHHHHTTCGGGTCCHHH---HHHHHHHHTCS--
T ss_pred HHHHCCCCCCCCHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHCCCC--
T ss_conf 3223223455680205689983389999997898887527999999999998414460357788---99999984999--
Q ss_pred CCHHCCCHHHHHHHHHHHHH
Q ss_conf 57120899999999999863
Q gi|254780398|r 259 LRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 259 ~R~e~Ls~~~~~~L~~~l~~ 278 (284)
|||+||++||++|++.++.
T Consensus 223 -~~e~Ls~e~~~~L~~~~~~ 241 (244)
T 1qam_A 223 -DLNNISFEQFLSLFNSYKL 241 (244)
T ss_dssp -CTTSCCHHHHHHHHHHHHH
T ss_pred -CHHHCCHHHHHHHHHHHHH
T ss_conf -8132999999999999986