HHsearch results for GI: 254780398 and protein with PDBid: 3gru_A
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=100.00 E-value=0 Score=535.08 Aligned_cols=253 Identities=31% Similarity=0.471 Sum_probs=223.8
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898433658411239899999999719899987999758988234677502352599842554303688787532200
Q gi|254780398|r 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 (284)
Q Consensus 16 ~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~ 95 (284)
++.++|||+||||||+|++++++||+.+++.++|.|||||||+|+||..|+++ +++|+|||+|++++++|++.+...+
T Consensus 19 ~~mi~pkK~lGQNFL~d~~i~~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~~- 96 (295)
T 3gru_A 19 SHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELYN- 96 (295)
T ss_dssp -----------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHCS-
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHCC-
T ss_conf 75724888778230289999999999638999995999799746999999816-8966999988799999997676427-
Q ss_pred CCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHH
Q ss_conf 12200000001431552133222011202322467889999985201000000110203344788753012312332345
Q gi|254780398|r 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 (284)
Q Consensus 96 ~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LS 175 (284)
+++++++||+++|++.+ .+++|||||||||||+|+++|+... +..+++|+|||||+||+|+||+|+||+||
T Consensus 97 n~~ii~~D~l~~d~~~~----~~~~vv~NLPYnIss~il~~l~~~~-----~~~~vlmvQkEvAeRi~A~pgsk~Yg~LS 167 (295)
T 3gru_A 97 NIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLIKRG-----FDLAVLMYQYEFAKRMVAAAGTKDYGRLS 167 (295)
T ss_dssp SEEEEESCTTTSCGGGS----CCSEEEEECCGGGHHHHHHHHHHHC-----CSEEEEEEEHHHHHHHHCCTTSTTCSHHH
T ss_pred CEEEEECCCCCCCHHHC----CCCEEEEEEHHHHCCHHHHCCCCCC-----CCCEEEEEHHHHHHHHHCCCCCHHHHHHH
T ss_conf 73688512103771333----7553786202642541132045555-----54002221389999974279980256777
Q ss_pred HHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC-----HH-
Q ss_conf 4320133201200011000010578757887301258855-3476789999999972731389998763181-----78-
Q gi|254780398|r 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----EN- 248 (284)
Q Consensus 176 v~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~-~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~-----~~- 248 (284)
|++|++|+++++++|||+||+|+|||||+||+++|++.+. ..+.+.|+++++.+|++|||+|+|+|+.... .+
T Consensus 168 V~~q~~~~v~~~~~V~~~~F~P~PKVdSavv~l~p~~~~~~~~~~~~f~~~vr~~F~~RRK~l~n~L~~~~~~~~~~k~~ 247 (295)
T 3gru_A 168 VAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDE 247 (295)
T ss_dssp HHHHTTEEEEEEEEECGGGEESCCSSCEEEEEEEECHHHHCCSCHHHHHHHHHHHHTTTTSBHHHHHHHTGGGGTCCHHH
T ss_pred HHHHHHEEEEEEEEECHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 77652101589258887877899973089999984688634235889999999988142147999988765541789999
Q ss_pred ---HHHH-------CCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf ---9997-------877746571208999999999998636
Q gi|254780398|r 249 ---LLHQ-------AGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 249 ---~l~~-------~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
+++. .+..++.|||+||++||++|++.+.+.
T Consensus 248 ~~~~l~~~l~~~~~~~~~~~~R~e~Ls~e~f~~L~~~l~~~ 288 (295)
T 3gru_A 248 MKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRF 288 (295)
T ss_dssp HHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 99999974044334656643472329999999999999999