BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] (284 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040075|gb|ACT56871.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN Sbjct: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR Sbjct: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW Sbjct: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS Sbjct: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI Sbjct: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 >gi|315122190|ref|YP_004062679.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495592|gb|ADR52191.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 283 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/283 (76%), Positives = 249/283 (87%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NK +SLK ILS Y I+P K MGQNFL D+N+LKKIA +SGSL+G+T IEIG GPGN Sbjct: 1 MISKNKKNSLKNILSRYDIVPHKNMGQNFLFDINLLKKIATTSGSLNGVTAIEIGPGPGN 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LTQ+LL LGA+KVIV+EKD QF PIL +IS Q+PNRLEIIQ DALK+DF++ +I +PIR Sbjct: 61 LTQILLELGAQKVIVVEKDPQFLPILNNISLQYPNRLEIIQGDALKIDFKELSHIPAPIR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 II+NLPYNIGTRLLFNWI++ TWPPFWESLTLLFQKEVG+RITAQKN PHYGRLS+LT W Sbjct: 121 IISNLPYNIGTRLLFNWITSSTWPPFWESLTLLFQKEVGKRITAQKNDPHYGRLSILTSW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA +MFDI PHVFFP PK+TSTV+HF PHLNPIPCCLESLKKITQEAFGKRRKTLRQS Sbjct: 181 RTKAKIMFDIPPHVFFPKPKITSTVVHFTPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 LK L GENLL QAGIE++LRAENLSIEDFCRITNI ++N +++ Sbjct: 241 LKPLEGENLLRQAGIESSLRAENLSIEDFCRITNIFSENNNVS 283 >gi|222085448|ref|YP_002543978.1| dimethyladenosine transferase [Agrobacterium radiobacter K84] gi|221722896|gb|ACM26052.1| dimethyladenosine transferase [Agrobacterium radiobacter K84] Length = 276 Score = 338 bits (866), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 152/267 (56%), Positives = 199/267 (74%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +K+A ++GSL+G+TV E+G GPG LT+ +L LG Sbjct: 11 LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAILALG 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KVI IE+D + P L +I+ +P RLE+I+ DALK DF + P++IIANLPYN+ Sbjct: 71 AAKVIAIERDARCLPALAEIADHYPGRLEVIEGDALKTDFAGMAS-EGPVKIIANLPYNV 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVG+RI A ++ HYGRL VL GWRT+A M FD Sbjct: 130 GTQLLVNWLLPGHWPPFWQSLTLMFQKEVGQRIVADEDDDHYGRLGVLCGWRTQAHMAFD 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 ISP F P PKVTSTV+H P NPIPC ++ L+K+TQ AFG+RRK LRQSLK LGGE L Sbjct: 190 ISPQAFSPPPKVTSTVVHLTPRENPIPCSVDKLEKVTQAAFGQRRKMLRQSLKPLGGETL 249 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +A I+ RAE LS+E+FCR+ N L Sbjct: 250 LQKADIDPQRRAETLSVEEFCRLANCL 276 >gi|218673561|ref|ZP_03523230.1| dimethyladenosine transferase [Rhizobium etli GR56] Length = 275 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 154/267 (57%), Positives = 200/267 (74%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+L+ TVIE+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEETTVIEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKVI IE+D + P L +I+ +P RLE+I+ DALK DFE P++IIANLPYN+ Sbjct: 70 ARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAP-EGPVKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRT+A M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGWRTEARMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 +SP F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L Sbjct: 189 VSPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+FC + N L Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|241203944|ref|YP_002975040.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857834|gb|ACS55501.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 152/267 (56%), Positives = 200/267 (74%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+LD T++E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGTLDEATIVEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKVI IE+D + P L +I+ +P RLE+I+ DALK+DFE P++IIANLPYN+ Sbjct: 70 ARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVP-EGPVKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRT+A M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGWRTEARMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H IP PIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L Sbjct: 189 VPPQAFTPPPKVTSTVVHLIPRDTPIPCAVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+FC + N L Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|227821471|ref|YP_002825441.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234] gi|254807879|sp|C3M9C2|RSMA_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|227340470|gb|ACP24688.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234] Length = 296 Score = 335 bits (859), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 149/267 (55%), Positives = 200/267 (74%), Gaps = 2/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKV+ IE+D + P L +IS+ +P RL++++ DALKVDFE+ P+RIIANLPYN+ Sbjct: 70 ARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVDFERL--AEGPVRIIANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPFW+S+TL+ Q+EVG RI A + HYGRL VL GWRTKA + FD Sbjct: 128 GTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIVAGADDDHYGRLGVLCGWRTKARLAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQSLK +GGE L Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPIDNPIPCAVSALEKVTQAAFGQRRKMLRQSLKSIGGEAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE L++E+FCR+ N L Sbjct: 248 LGKAGIDPQRRAETLTVEEFCRLANCL 274 >gi|327188008|gb|EGE55238.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CNPAF512] Length = 275 Score = 335 bits (858), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 150/267 (56%), Positives = 199/267 (74%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KV+ +E+D + P L +I+ +P RLE+I+ DALK DFE P++IIANLPYN+ Sbjct: 70 AKKVVAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFESQAP-EGPVKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRTKA M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGWRTKARMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+FC + N L Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|150395984|ref|YP_001326451.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419] gi|166221706|sp|A6U7I6|RSMA_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150027499|gb|ABR59616.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419] Length = 274 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 150/267 (56%), Positives = 198/267 (74%), Gaps = 2/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+G+TVIE+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEGVTVIEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KV+ IE+D + P L +I + +P RL++++ DALKVDFE + P+RIIANLPYN+ Sbjct: 70 AKKVVAIERDSRCLPALAEIGAHYPERLDVVEGDALKVDFEALAD--GPVRIIANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+S+TL+FQ+EVG RI A + HYGRL VL GWRTKA++ FD Sbjct: 128 GTQLLVNWLLPGRWPPFWQSMTLMFQREVGLRIVASPDDDHYGRLGVLCGWRTKASLAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H P PIPC L+K+TQ AFG+RRK LRQSLK LGGE L Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPIEVPIPCSPAVLEKVTQAAFGQRRKMLRQSLKPLGGEAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+FCR+ N L Sbjct: 248 LAKAGIDPKRRAETLSVEEFCRLANCL 274 >gi|190891131|ref|YP_001977673.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CIAT 652] gi|218515820|ref|ZP_03512660.1| dimethyladenosine transferase [Rhizobium etli 8C-3] gi|226732613|sp|B3PUU6|RSMA_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|190696410|gb|ACE90495.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CIAT 652] Length = 275 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 149/267 (55%), Positives = 199/267 (74%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E+D + P L +I+ +P RLE+I+ DALK DFE + ++IIANLPYN+ Sbjct: 70 AKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFESLAPEGA-VKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRT+A M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGWRTEARMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRKNPIPCSVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+FC + N L Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|15964902|ref|NP_385255.1| dimethyladenosine transferase [Sinorhizobium meliloti 1021] gi|307300972|ref|ZP_07580741.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C] gi|27151590|sp|Q92QZ1|RSMA_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15074081|emb|CAC45728.1| Putative dimethyladenosine transferase [Sinorhizobium meliloti 1021] gi|306903927|gb|EFN34513.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C] Length = 274 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 151/267 (56%), Positives = 197/267 (73%), Gaps = 2/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KV+ IE+D + P L +I + +P RL+II+DDALKVDFE + P+RIIANLPYN+ Sbjct: 70 AKKVVAIERDSRCLPALAEIGAHYPGRLDIIEDDALKVDFEALAD--GPVRIIANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+S+TL+FQ+EVG RI A + HYGRL VL GWRTKA + FD Sbjct: 128 GTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGWRTKARLAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H P PIPC L+K+TQ AFG+RRK LRQSLK LGGE L Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQSLKPLGGEAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE L++E+FCR+ N L Sbjct: 248 LAKAGIDPQRRAETLTVEEFCRLANCL 274 >gi|325292482|ref|YP_004278346.1| dimethyladenosine transferase [Agrobacterium sp. H13-3] gi|325060335|gb|ADY64026.1| dimethyladenosine transferase [Agrobacterium sp. H13-3] Length = 276 Score = 331 bits (849), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 147/267 (55%), Positives = 195/267 (73%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG LT+ +L+LG Sbjct: 10 LRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAILSLG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI IE+D + P L +I + +P RLE+I+ DALK DFE P+RIIANLPYN+ Sbjct: 70 AKKVIAIERDSRCLPALAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVRIIANLPYNV 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW S+TL+FQKEVG+RI A++ HYGRL VL GWRT + M FD Sbjct: 130 GTQLLVNWLLPKEWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGWRTVSEMAFD 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H +P P+PC + L+K+T+ AFG+RRK LRQS+K LGGE L Sbjct: 190 VPPQAFSPPPKVTSTVVHLLPKEKPLPCDVAKLEKVTEAAFGQRRKMLRQSVKSLGGEVL 249 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+F + N L Sbjct: 250 LEKAGIDATRRAETLSVEEFVTLANCL 276 >gi|15888443|ref|NP_354124.1| dimethyladenosine transferase [Agrobacterium tumefaciens str. C58] gi|27151578|sp|Q8UGD5|RSMA_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15156135|gb|AAK86909.1| rRNA-adenine N6,N6-dimethyltransferase [Agrobacterium tumefaciens str. C58] Length = 276 Score = 331 bits (849), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 145/267 (54%), Positives = 196/267 (73%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG LT+ +L+LG Sbjct: 10 LRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAILSLG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E+D + P+L +I + +P RLE+I+ DALK DFE P+RIIANLPYN+ Sbjct: 70 AKKVIAVERDSRCLPVLAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVRIIANLPYNV 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW S+TL+FQKEVG+RI A++ HYGRL VL GWRT + M FD Sbjct: 130 GTQLLVNWLLPREWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGWRTVSEMAFD 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H +P P+PC + L+++T+ AFG+RRK LRQS+K LGGE L Sbjct: 190 VPPQAFSPPPKVTSTVVHLLPKDKPLPCDVAKLERVTEAAFGQRRKMLRQSVKSLGGETL 249 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+F + N L Sbjct: 250 LEKAGIDPTRRAETLSVEEFVTLANCL 276 >gi|222148148|ref|YP_002549105.1| dimethyladenosine transferase [Agrobacterium vitis S4] gi|254807854|sp|B9JUV4|RSMA_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221735136|gb|ACM36099.1| rRNA-adenine N6N6-dimethyltransferase [Agrobacterium vitis S4] Length = 275 Score = 331 bits (848), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 152/267 (56%), Positives = 196/267 (73%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLNI +K+A ++G L TV E+G GPG LT+ LL LG Sbjct: 10 LRDVIQRHGLDAKKALGQNFLLDLNITQKVARTAGDLTNATVFEVGPGPGGLTRALLALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI IE+D + P L +IS +P RLE+I+ DALK DFE P++I+ANLPYN+ Sbjct: 70 AKKVIAIERDSRCLPALAEISDHYPGRLEVIEGDALKTDFEAMAP-DGPVKIVANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVG+RI A+ + HYGRL VL GWRT+A M FD Sbjct: 129 GTQLLINWLMPRQWPPFWDSLTLMFQKEVGQRIVAEADDDHYGRLGVLCGWRTEAHMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 +SP F P PKVTSTV+H P PIPC + L+K+TQ AFG+RRK LR SLK LGGE L Sbjct: 189 LSPQAFTPPPKVTSTVVHLTPRPAPIPCEIAKLEKLTQAAFGQRRKMLRASLKPLGGEAL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L++A I+ + RAE LS+E+FCRI N+L Sbjct: 249 LNRAEIDPSRRAETLSVEEFCRIANLL 275 >gi|209548666|ref|YP_002280583.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226732614|sp|B5ZWD8|RSMA_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209534422|gb|ACI54357.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 275 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 150/267 (56%), Positives = 195/267 (73%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+L+ T+ E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEEATIFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKVI +E+D + P L +I+ +P RLE+I+ DALK DFE PI+IIANLPYN+ Sbjct: 70 ARKVIAVERDTRCLPALAEIADHYPGRLEVIEGDALKTDFEALAP-DGPIKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRT+ M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVASEDDDHYGRLGVLCGWRTQTRMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H P NPIPC + L+K+TQ AFG+RRK LRQSLK LGGE L Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRENPIPCAVGDLEKVTQAAFGQRRKMLRQSLKPLGGERL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+FC + N L Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|116251330|ref|YP_767168.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae 3841] gi|118600891|sp|Q1MJ01|RSMA_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115255978|emb|CAK07059.1| putative dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae 3841] Length = 275 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 151/267 (56%), Positives = 196/267 (73%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+L+ TV E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEDATVFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKVI IE+D + P L +I+ +P RLE+I+ DALK DFE PI+IIANLPYN+ Sbjct: 70 ARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFETLAP-QGPIKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRT+A M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGWRTEARMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+ P NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE L Sbjct: 189 VPPQAFTPPPKVTSTVVQLTPRENPIPCAVSNLEKVTQAAFGQRRKMLRQSLKPLGGERL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+++FC + N L Sbjct: 249 LVKAGIDPARRAETLSVKEFCLLANSL 275 >gi|307317707|ref|ZP_07597145.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83] gi|306896469|gb|EFN27217.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83] Length = 274 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 150/267 (56%), Positives = 195/267 (73%), Gaps = 2/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KV+ IE+D + P L +I + +P RL+II+ DALKVDFE P+RIIANLPYN+ Sbjct: 70 AKKVVAIERDSRCLPALAEIGAHYPGRLDIIEGDALKVDFEAL--AGGPVRIIANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+S+TL+FQ+EVG RI A + HYGRL VL GWRTKA + FD Sbjct: 128 GTQLLVNWLLPGHWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGWRTKARLAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H P PIPC L+K+TQ AFG+RRK LRQSLK LGGE L Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQSLKPLGGEAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE L++E+FCR+ N L Sbjct: 248 LAKAGIDPQRRAETLTVEEFCRLANCL 274 >gi|86357087|ref|YP_468979.1| dimethyladenosine transferase [Rhizobium etli CFN 42] gi|119365052|sp|Q2KA84|RSMA_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86281189|gb|ABC90252.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CFN 42] Length = 275 Score = 328 bits (840), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 147/267 (55%), Positives = 197/267 (73%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +K+A ++G+L+ TV E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGALEETTVFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E+D + P L +I+ +P RLE+I+ DALK DFE P++IIANLPYN+ Sbjct: 70 AKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFEALAP-EGPVKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRT A M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGWRTDARMAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTSTV+H +P NP+ C + +L+K+TQ AFG+RRK LRQSLK LGGE+L Sbjct: 189 VPPQAFTPPPKVTSTVVHLLPRENPVQCAVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+FC + N L Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANNL 275 >gi|307946738|ref|ZP_07662073.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4] gi|307770402|gb|EFO29628.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4] Length = 280 Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 3/267 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + KK +GQNFLLDLN+ +IA S+G L+G+TV+E+G GPG LT+ +L G Sbjct: 10 LREVIATHGLDAKKSLGQNFLLDLNLTSRIARSAGDLNGVTVLEVGPGPGGLTRAILAAG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +VI IEKD + P L +IS+ + +LE+I +DALK+D IS PI+IIANLPYN+ Sbjct: 70 ADRVIAIEKDTRCLPALAEISNHYDGKLEVISEDALKID-PTSLGISGPIKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NWI+ + WPPFW SLTLLFQKEVGERI A+ S YGRL VL WR ++ M+FD Sbjct: 129 GTQLLINWITTENWPPFWTSLTLLFQKEVGERIVAKPGSKAYGRLGVLASWRCQSGMLFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--E 247 I P F P PKVTS V+H +P +P+PC L L+KIT AFG+RRK LR SLK LG E Sbjct: 189 IGPQAFTPPPKVTSAVVHLVPTHSPLPCDLNILEKITAAAFGQRRKMLRASLKSLGKPPE 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 LL AGIE RAE + +E F RI N Sbjct: 249 PLLETAGIEPTTRAEQVDVEGFVRIAN 275 >gi|110634113|ref|YP_674321.1| dimethyladenosine transferase [Mesorhizobium sp. BNC1] gi|118600875|sp|Q11HG9|RSMA_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110285097|gb|ABG63156.1| dimethyladenosine transferase [Chelativorans sp. BNC1] Length = 275 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 131/265 (49%), Positives = 187/265 (70%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ ++IA ++G LD TV+E+G GPG LT+ LL G Sbjct: 9 LRDVIERHGLFARKALGQNFLLDLNLTRRIARTAGGLDNATVLEVGPGPGGLTRALLMEG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IE+D++ L++I++ +P RLEI+ DA+K DF S ++I+ANLPYNI Sbjct: 69 ARRVVAIERDERCIAALEEIAAHYPGRLEIVAGDAMKADFAALAGNSGDVKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ TWPPF+ES+TL+FQ+EV ERI A+ S HYGRL VL GWRT+A + FD Sbjct: 129 GTELLIRWLTPQTWPPFYESMTLMFQREVAERIVAKPGSSHYGRLGVLAGWRTEARIAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+ +P +P+ + L + T+ AFG+RRK LRQSL+ +GGE L Sbjct: 189 VPPQAFTPPPKVISSVVKIVPRADPLTVEVGRLARTTEAAFGQRRKMLRQSLRSVGGEAL 248 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L +AGI+ RAE LS+E+F R+ Sbjct: 249 LEKAGIDGTRRAETLSVEEFVRLAR 273 >gi|319784428|ref|YP_004143904.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170316|gb|ADV13854.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 279 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 137/271 (50%), Positives = 188/271 (69%), Gaps = 4/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ KIA ++G L TVIE+G GPG LT+ LL G Sbjct: 9 LREVIERHGLQAKKALGQNFLLDLNLTGKIARTAGDLSDATVIEVGPGPGGLTRALLANG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANL 125 AR+VI IE+D++ L ++S +P RLE++ DALK DF ++ P++I+ANL Sbjct: 69 ARQVIAIERDERCLAALAEVSGHYPGRLEVVSGDALKTDFTGLAGRATGNGGPVKIVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNIGT LL W++ WPPF+ S+TL+FQ+EV ERI A S YGRL VL GWRT+A Sbjct: 129 PYNIGTELLVRWLTVSDWPPFYTSMTLMFQREVAERIVAPAGSDSYGRLGVLAGWRTEAR 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + FD+ P F P PKVTS+V+H +P P+P ++ L ++T+ AFG+RRK LRQS+K LG Sbjct: 189 IAFDVPPQAFTPPPKVTSSVVHLVPRPMPLPTEVKKLGRVTEAAFGQRRKMLRQSVKSLG 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 GE LL +AGI+ RAE LS+E+F R+TN + Sbjct: 249 GEALLDRAGIDPTRRAETLSVEEFVRLTNAV 279 >gi|260466951|ref|ZP_05813133.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075] gi|259029248|gb|EEW30542.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075] Length = 274 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 137/267 (51%), Positives = 187/267 (70%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ +++ KK +GQNFLLDLN+ KIA ++G L T+IE+G GPG LT+ LL G Sbjct: 9 LRDVIERHELQAKKALGQNFLLDLNLTSKIARAAGDLTNTTIIEVGPGPGGLTRALLFNG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+VI IE+D++ L ++S +P RLEII DALK DF +P +I+ANLPYNI Sbjct: 69 ARRVIAIERDERCLAALAEVSEHYPGRLEIIAGDALKTDFAAL-AAGAPTKIVANLPYNI 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPF+ S+TL+FQ+EV +RI A S YGRL VL GWRT+A + FD Sbjct: 128 GTELLIRWLTVTDWPPFYASMTLMFQREVAQRIVAAPGSDAYGRLGVLAGWRTQARIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTS+V+H P P+P ++ L ++T+ AFG+RRK LRQS+K LGGE L Sbjct: 188 VPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKMLRQSVKSLGGETL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI+ RAE LS+E+F R+TN++ Sbjct: 248 LERAGIDPTRRAETLSVEEFVRLTNLV 274 >gi|154246772|ref|YP_001417730.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2] gi|226732642|sp|A7IJ80|RSMA_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|154160857|gb|ABS68073.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2] Length = 288 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 137/267 (51%), Positives = 184/267 (68%), Gaps = 3/267 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA +SG L+G TV+E+G GPG LT+ LL LG Sbjct: 10 LRDVIRRHGLSAQKSLGQNFLLDLNLTGRIARASGPLEGATVVEVGPGPGGLTRALLALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+VI IE+DQ+ L ++S +P RLE+I DALKVD +R++ANLPYNI Sbjct: 70 ARRVIAIERDQRCLDALAEVSDHYPGRLEVISGDALKVDVRPLVG-DGEVRVVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+S D WPP++ SLTL+FQKEV ERI A S YGRL+VL GWRT A + FD Sbjct: 129 ATLLLIGWLSTDPWPPWFSSLTLMFQKEVAERIVAAPGSKAYGRLAVLAGWRTTARIAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248 ++P F P PKVTS+V+H +P P+PC L +L+K+T+ AFG+RRK LRQSLK LG + Sbjct: 189 VAPSAFVPPPKVTSSVVHLVPRSEPLPCALSALEKVTEAAFGQRRKMLRQSLKSLGVDTA 248 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITN 274 LL G+E RAE + ++ F R+ N Sbjct: 249 ALLKATGVEETARAEEIDVDGFVRLAN 275 >gi|163759131|ref|ZP_02166217.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43] gi|162283535|gb|EDQ33820.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43] Length = 276 Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 135/267 (50%), Positives = 189/267 (70%), Gaps = 1/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ I++ Y + P+K +GQNFL DLN+ KIA ++G L+G T+ EIG GPG LT+ LL G Sbjct: 11 LRDIVATYGLAPRKALGQNFLFDLNLTGKIARAAGPLEGFTIFEIGPGPGGLTRALLEQG 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V+ IE+DQ+ P+L++IS+ +P +LE+++ DAL VD + +I+ANLPYN+ Sbjct: 71 AERVVAIERDQRCLPVLEEISAHYPGKLEVVEADALDVDLAALAGGAP-AKIVANLPYNV 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW++ + PFW S+TL+FQKEVG+RI A S H+GRL VL GW T A ++FD Sbjct: 130 GTQLLINWLTVNPKAPFWTSMTLMFQKEVGQRIIAAPGSNHFGRLGVLAGWLTHADILFD 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKVTS+V+ +P +P+PC L L+++TQ AFG+RRK LRQSLK LGGE L Sbjct: 190 VPPQAFTPPPKVTSSVVQLVPRADPLPCELAKLERVTQAAFGQRRKMLRQSLKPLGGEAL 249 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L GI+ RAE LS+E+FC + + Sbjct: 250 LESVGIDPARRAETLSVEEFCALARAI 276 >gi|114704784|ref|ZP_01437692.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Fulvimarina pelagi HTCC2506] gi|114539569|gb|EAU42689.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Fulvimarina pelagi HTCC2506] Length = 277 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/274 (51%), Positives = 191/274 (69%), Gaps = 1/274 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ ++ L+T+++ + ++P+K +GQNFLLDLN+ KIA + L+ V+E+G GPG Sbjct: 1 MSTIDELPPLRTVIAEHDLVPRKQLGQNFLLDLNLTSKIARQAAPLEDCIVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V+ EKD + P+L+DI+ ++P RLE+ Q DAL +D E + ++ Sbjct: 61 LTRALLANGASRVVAAEKDPRCVPVLEDIAKRYPGRLEVRQMDALDLDVESIAEDRT-LK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+S + WPP W+SLTL+FQKEV ERI A +S HYGRL+VL G Sbjct: 120 IVANLPYNVGTQLLVNWLSVEAWPPRWQSLTLMFQKEVAERIVALPSSSHYGRLAVLAGC 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA ++FDI F P PKVTS V+ P P+P L +L+K+T AFG+RRK LRQS Sbjct: 180 RTKARILFDIPRQAFTPPPKVTSAVVQLTPRDAPLPVSLAALEKVTLTAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 LK LGGE LL+ GI+ RAE LSIE+F I N Sbjct: 240 LKPLGGEALLNAVGIDPQRRAETLSIEEFVAIAN 273 >gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571] gi|172047844|sp|A8HVI9|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571] Length = 291 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/276 (49%), Positives = 191/276 (69%), Gaps = 3/276 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA SG L+G TV+E+G GPG Sbjct: 1 MSAIDDLPPLREVIRAHGLSAQKSLGQNFLLDLNLTARIARGSGPLEGATVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGARKVI IE+D + L +I++ +P RLEII+ DALKVD + + R Sbjct: 61 LTRALLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEGDALKVDVRPHLD-GAEAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+GT+LL W+S D WPP++ SLTL+FQ+EV ERI A +S YGRL+VLTGW Sbjct: 120 VVANLPYNVGTQLLVGWLSTDPWPPWFSSLTLMFQREVAERIVAGPDSKAYGRLAVLTGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R +A ++FD++P F P PKVTS+VIH +P P+PC L L+++T+ AFG+RRK LRQS Sbjct: 180 RAQARILFDVAPSAFVPPPKVTSSVIHVVPRAEPVPCALRDLERVTEAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITN 274 LK LG + LL + GI+ RAE + + F + N Sbjct: 240 LKSLGVDPLALLSETGIDETARAEEIDVAGFLALAN 275 >gi|118588149|ref|ZP_01545559.1| dimethyladenosine transferase [Stappia aggregata IAM 12614] gi|118439771|gb|EAV46402.1| dimethyladenosine transferase [Stappia aggregata IAM 12614] Length = 274 Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 140/275 (50%), Positives = 189/275 (68%), Gaps = 3/275 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +++ + + KK +GQNFLLDLN+ +IA S+GSL+ TV+E+G GPG LT+ LL G Sbjct: 1 MRDVIAEHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDCTVLEVGPGPGGLTRALLAAG 60 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++VI IEKD + P L +IS+ +P RLE+I+ DAL++D +RI ANLPYN+ Sbjct: 61 AKRVIAIEKDSRCLPALAEISAHYPGRLEVIEGDALEIDPVALTG-GDKVRIAANLPYNV 119 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NWI+ WPPFW SLTL+FQKEVGERI+A S YGRL+VL GWR K ++FD Sbjct: 120 GTQLLINWITTPDWPPFWSSLTLMFQKEVGERISASPGSKAYGRLAVLAGWRCKGGILFD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247 ISP F P PKVTS V+H P+ +P+PC L++L+KIT AFG+RRK LR SLK L E Sbjct: 180 ISPKAFTPPPKVTSAVVHLEPNASPLPCDLKALEKITAAAFGQRRKMLRASLKSLSADAE 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L+ +AG++ RAE + I F + N Q + Sbjct: 240 ELVTKAGLKPTARAEEIDIAGFVDLANTFRAAQAV 274 >gi|13476521|ref|NP_108091.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099] gi|27151594|sp|Q984S7|RSMA_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|14027282|dbj|BAB54236.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099] Length = 279 Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 136/269 (50%), Positives = 187/269 (69%), Gaps = 4/269 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ KIA S+G L VIE+G GPG LT+ LL+ G Sbjct: 9 LRDVIERHGLQAKKALGQNFLLDLNLTGKIARSAGDLTNTAVIEVGPGPGGLTRALLSNG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125 AR+V+ IE+D++ L ++S+ +P RLE++ DALK DF + + +RI+ANL Sbjct: 69 ARRVVAIERDERCLAALAEVSAHYPGRLEVVSGDALKTDFAALASAAGGASGQVRIVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNIGT LL W++ WPPF+ S+TL+FQ+EV +RI A+ S YGRL VL GWRTKA Sbjct: 129 PYNIGTELLVRWLTVVDWPPFYASMTLMFQREVAQRIVAEPGSDAYGRLGVLAGWRTKAR 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + FD+ P F P PKVTS+V+H P P+P ++ L ++T+ AFG+RRK LRQS+K LG Sbjct: 189 IAFDVPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKMLRQSVKSLG 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274 GE LL +AGI+ RAE LS+E+F R+TN Sbjct: 249 GEALLERAGIDPTRRAETLSVEEFVRLTN 277 >gi|319404051|emb|CBI77639.1| dimethyladenosine transferase [Bartonella rochalimae ATCC BAA-1498] Length = 276 Score = 297 bits (761), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 142/269 (52%), Positives = 190/269 (70%), Gaps = 2/269 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++S YK+ K +GQNF+ DLN+ KIA +G+++G V+EIG GPG LT+ LL G Sbjct: 9 LRNVISKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128 A V IE+D++ P L +I +P +L++I +DALK DF K F RIIANLPYN Sbjct: 69 A-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRIIANLPYN 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SP+YGRLS+LTGWR+ A + F Sbjct: 128 IGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATAQSPYYGRLSILTGWRSIAKIAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 DI P F P PKVTS+V+H IP L P+ C + L +T+ AFG+RRK LRQSLK +GGE Sbjct: 188 DIPPRAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSLKTIGGET 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL +AGI+ RAE LSI +F + N++T Sbjct: 248 LLEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|49475334|ref|YP_033375.1| dimethyladenosine transferase [Bartonella henselae str. Houston-1] gi|62900526|sp|Q6G438|RSMA_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49238140|emb|CAF27348.1| Dimethyladenosine transferase [Bartonella henselae str. Houston-1] Length = 276 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 142/268 (52%), Positives = 190/268 (70%), Gaps = 2/268 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ Y + K +GQNFL DLN+ KIA +G+++G VIE+G GPG LT+ LL G Sbjct: 9 LREVINTYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYN 128 A V IE+D++ P L +I +P +L+II +DALK DF K F IS RIIANLPYN Sbjct: 69 A-IVTAIERDERCIPALLEIEKHYPQKLKIICNDALKQDFSKLFEISPEKPRIIANLPYN 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT+LL NW+ A+ WPPF+ES+TL+FQ+EV +RITA+ S HYGRLSVLTGWRT A + F Sbjct: 128 IGTQLLLNWLLAEPWPPFYESMTLMFQREVAQRITAKPQSAHYGRLSVLTGWRTIAKIAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 D+ P F P+PK+TS+V+H IP P+ C + L +T+ AFG+RRK LRQ+LK LGGE Sbjct: 188 DVPPQAFIPAPKITSSVVHIIPRTQPLTCSAQKLSFVTKTAFGQRRKMLRQNLKTLGGEV 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL +AGI+ RAE L I +F + N++ Sbjct: 248 LLEKAGIDETRRAETLEISEFVTLANLV 275 >gi|319407063|emb|CBI80700.1| dimethyladenosine transferase [Bartonella sp. 1-1C] Length = 276 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 142/269 (52%), Positives = 189/269 (70%), Gaps = 2/269 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ I++ YK+ K +GQNF+ DLN+ KIA +G+++G V+EIG GPG LT+ LL G Sbjct: 9 LRNIINKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128 A V IE+D++ P L +I +P +L++I +DALK DF K F RIIANLPYN Sbjct: 69 A-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRIIANLPYN 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT+LL NW+ WPPF+ES+TL+FQ+EV +RITA SP+YGRLS+LTGWR+ A + F Sbjct: 128 IGTQLLLNWLLTKAWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWRSIAKIAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 DI P F P PKVTS+V+H IP L P+ C + L +T+ AFG+RRK LRQSLK +GGE Sbjct: 188 DIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSLKTIGGET 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL +AGI+ RAE LSI +F + N++T Sbjct: 248 LLEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|163868023|ref|YP_001609227.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476] gi|189028801|sp|A9IRW8|RSMA_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|161017674|emb|CAK01232.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 145/270 (53%), Positives = 192/270 (71%), Gaps = 4/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ Y + K +GQNFL DLN+ KIA +G+++G V+EIG GPG LT+ LL G Sbjct: 9 LREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGTIEGKPVLEIGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPY 127 A V IE+D++ P L +I +PN+L++I +DALK DF K F SSP RIIANLPY Sbjct: 69 A-IVTAIERDERCIPALLEIEKHYPNQLKLICNDALKQDFSKLFG-SSPEKPRIIANLPY 126 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NIGT+LL NW+ + WPPF+ES+TL+FQ+EV +RITA+ S HYGRLSVLTGWRT A + Sbjct: 127 NIGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSSHYGRLSVLTGWRTIAKIA 186 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 FD+ P F P+PKVTS+V+H IP P+ C + L IT+ AFG+RRK LRQ+LK LGGE Sbjct: 187 FDVPPQAFIPAPKVTSSVVHIIPRAQPLVCSAQKLSLITKTAFGQRRKMLRQNLKTLGGE 246 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 +L +AGI+ RAE LSI +F + N++T Sbjct: 247 IILEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|23501569|ref|NP_697696.1| dimethyladenosine transferase [Brucella suis 1330] gi|82699572|ref|YP_414146.1| dimethyladenosine transferase [Brucella melitensis biovar Abortus 2308] gi|148560508|ref|YP_001258664.1| dimethyladenosine transferase [Brucella ovis ATCC 25840] gi|161618651|ref|YP_001592538.1| dimethyladenosine transferase [Brucella canis ATCC 23365] gi|189023894|ref|YP_001934662.1| dimethyladenosine transferase [Brucella abortus S19] gi|225627179|ref|ZP_03785217.1| dimethyladenosine transferase [Brucella ceti str. Cudo] gi|225852202|ref|YP_002732435.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457] gi|237815135|ref|ZP_04594133.1| dimethyladenosine transferase [Brucella abortus str. 2308 A] gi|254688954|ref|ZP_05152208.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|254693436|ref|ZP_05155264.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|254697088|ref|ZP_05158916.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|254701465|ref|ZP_05163293.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|254704012|ref|ZP_05165840.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|254707614|ref|ZP_05169442.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|254709803|ref|ZP_05171614.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|254713807|ref|ZP_05175618.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|254717135|ref|ZP_05178946.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|254729984|ref|ZP_05188562.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|256031294|ref|ZP_05444908.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|256113218|ref|ZP_05454086.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|256159408|ref|ZP_05457186.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|256254702|ref|ZP_05460238.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|256257202|ref|ZP_05462738.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|256264290|ref|ZP_05466822.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9] gi|256369117|ref|YP_003106625.1| dimethyladenosine transferase [Brucella microti CCM 4915] gi|260168433|ref|ZP_05755244.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|260545604|ref|ZP_05821345.1| dimethyladenosine transferase [Brucella abortus NCTC 8038] gi|260566739|ref|ZP_05837209.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40] gi|260754443|ref|ZP_05866791.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|260757662|ref|ZP_05870010.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|260761489|ref|ZP_05873832.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|260883472|ref|ZP_05895086.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|261213689|ref|ZP_05927970.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|261218950|ref|ZP_05933231.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|261221882|ref|ZP_05936163.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|261315104|ref|ZP_05954301.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|261317341|ref|ZP_05956538.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|261321551|ref|ZP_05960748.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|261752008|ref|ZP_05995717.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|261754667|ref|ZP_05998376.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|261757895|ref|ZP_06001604.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|265988379|ref|ZP_06100936.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|265994629|ref|ZP_06107186.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|265997845|ref|ZP_06110402.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|297248052|ref|ZP_06931770.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196] gi|33516941|sp|Q8G1N0|RSMA_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122064285|sp|Q2YN15|RSMA_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221650|sp|A5VPL7|RSMA_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028802|sp|A9MA55|RSMA_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729760|sp|B2S4U1|RSMA_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807862|sp|C0RI23|RSMA_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23347481|gb|AAN29611.1| dimethyladenosine transferase [Brucella suis 1330] gi|82615673|emb|CAJ10660.1| SAM (and some other nucleotide) binding motif:Ribosomal RNA adenine dimethylase [Brucella melitensis biovar Abortus 2308] gi|148371765|gb|ABQ61744.1| dimethyladenosine transferase [Brucella ovis ATCC 25840] gi|161335462|gb|ABX61767.1| dimethyladenosine transferase [Brucella canis ATCC 23365] gi|189019466|gb|ACD72188.1| SAM (and some other nucleotide) binding motif [Brucella abortus S19] gi|225618014|gb|EEH15058.1| dimethyladenosine transferase [Brucella ceti str. Cudo] gi|225640567|gb|ACO00481.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457] gi|237789972|gb|EEP64182.1| dimethyladenosine transferase [Brucella abortus str. 2308 A] gi|255999277|gb|ACU47676.1| dimethyladenosine transferase [Brucella microti CCM 4915] gi|260097011|gb|EEW80886.1| dimethyladenosine transferase [Brucella abortus NCTC 8038] gi|260156257|gb|EEW91337.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40] gi|260667980|gb|EEX54920.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|260671921|gb|EEX58742.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|260674551|gb|EEX61372.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|260873000|gb|EEX80069.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|260915296|gb|EEX82157.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|260920466|gb|EEX87119.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|260924039|gb|EEX90607.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|261294241|gb|EEX97737.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|261296564|gb|EEY00061.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|261304130|gb|EEY07627.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|261737879|gb|EEY25875.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|261741761|gb|EEY29687.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|261744420|gb|EEY32346.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|262552313|gb|EEZ08303.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|262765742|gb|EEZ11531.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|263094550|gb|EEZ18359.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9] gi|264660576|gb|EEZ30837.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|297175221|gb|EFH34568.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196] gi|326408701|gb|ADZ65766.1| SAM (and some other nucleotide) binding motif protein [Brucella melitensis M28] gi|326538425|gb|ADZ86640.1| dimethyladenosine transferase [Brucella melitensis M5-90] Length = 276 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|62289644|ref|YP_221437.1| dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941] gi|81309439|sp|Q57E58|RSMA_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62195776|gb|AAX74076.1| KsgA, dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941] Length = 276 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKMGIDGTRRAETLSVEEFVALAN 272 >gi|17987550|ref|NP_540184.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|256044375|ref|ZP_05447279.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] gi|260563727|ref|ZP_05834213.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|265990793|ref|ZP_06103350.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] gi|27151583|sp|Q8YG94|RSMA_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|17983253|gb|AAL52448.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|260153743|gb|EEW88835.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|263001577|gb|EEZ14152.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] Length = 276 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKLDSDHYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|163842952|ref|YP_001627356.1| dimethyladenosine transferase [Brucella suis ATCC 23445] gi|189028803|sp|B0CL06|RSMA_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|163673675|gb|ABY37786.1| dimethyladenosine transferase [Brucella suis ATCC 23445] Length = 276 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGGAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|306842053|ref|ZP_07474726.1| dimethyladenosine transferase [Brucella sp. BO2] gi|306287894|gb|EFM59314.1| dimethyladenosine transferase [Brucella sp. BO2] Length = 276 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPEPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P+PC E L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQSLKSVGGAAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|306845283|ref|ZP_07477859.1| dimethyladenosine transferase [Brucella sp. BO1] gi|306274442|gb|EFM56249.1| dimethyladenosine transferase [Brucella sp. BO1] Length = 276 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P+PC E L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQSLKSVGGAAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|90419497|ref|ZP_01227407.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1] gi|90336434|gb|EAS50175.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1] Length = 279 Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 137/269 (50%), Positives = 183/269 (68%), Gaps = 2/269 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +L + + PK+ +GQNFLLDLN+ +IA + L+G T++EIG GPG LT+ LL G Sbjct: 10 LRAVLEEHGLDPKRSLGQNFLLDLNLTGRIARQALPLEGATIVEIGPGPGGLTRALLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127 A V+V+EKD + P L+ I++ +P RL+I + DAL D + + + ++I+ANLPY Sbjct: 70 ASHVVVVEKDSRCIPALEAIAAHYPGRLDIRRADALDFDLAEVAHPDGADALKIVANLPY 129 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT+LL NWI+ WPP W SLTL+FQ+EV ERI A S HYGRL VL GWRT+A ++ Sbjct: 130 NVGTQLLLNWIATPQWPPVWSSLTLMFQREVAERIVAVPGSKHYGRLGVLAGWRTQAKIL 189 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 FD+ P F P PKVTS+VI P P P L +L+++T AFG+RRK LRQSLK LGGE Sbjct: 190 FDVPPEAFTPPPKVTSSVIQLRPRAEPEPASLAALERVTATAFGQRRKMLRQSLKSLGGE 249 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL A I+ RAE LSI +F R+ N L Sbjct: 250 ALLVAADIDPQRRAETLSISEFVRLANGL 278 >gi|254504321|ref|ZP_05116472.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11] gi|222440392|gb|EEE47071.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11] Length = 283 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 138/267 (51%), Positives = 181/267 (67%), Gaps = 3/267 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + KK +GQNFLLDLN+ +IA S+GSL+ T++EIG GPG LT+ LL G Sbjct: 10 LRDVIAAHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDHTILEIGPGPGGLTRALLAAG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KV+ IEKD + P L +I+ +P RLE+I+ DAL++D +RI ANLPYN+ Sbjct: 70 AKKVVAIEKDSRCLPALAEIAYHYPGRLEVIEGDALEIDPVAITG-GGKVRIAANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NWI+ WPPFW SLTL+FQKEVGERI A S YGRL VL GWR ++FD Sbjct: 129 GTQLLINWITTPDWPPFWSSLTLMFQKEVGERIAAAPGSKAYGRLGVLAGWRCNGGILFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247 ISP F P PKVTS V+H P+ P+PC L SL+K+T AFG+RRK LR SLK L E Sbjct: 189 ISPKAFTPPPKVTSAVVHLTPNPAPLPCNLSSLEKLTAAAFGQRRKMLRASLKSLSPDAE 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 L+ +AG++ RAE + I F + N Sbjct: 249 RLIEKAGLKPTARAEEIDIAGFVNLAN 275 >gi|294852044|ref|ZP_06792717.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026] gi|294820633|gb|EFG37632.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026] Length = 276 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 134/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KI +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKITRQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALAEIAAHYPGRLRIIVGDALEQDFTALFPEGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|153009933|ref|YP_001371148.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188] gi|166221683|sp|A6X265|RSMA_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151561821|gb|ABS15319.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188] Length = 278 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G+L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGNLQDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D++ L +I + +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A +S HYGRL VL GWRT + + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDSDHYGRLGVLAGWRTVSKISFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H IP NP+PC +L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIIPRENPLPCNANALGQITQAAFGQRRKMLRQSLKPVGGAEL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|254718818|ref|ZP_05180629.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|265983803|ref|ZP_06096538.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|306838740|ref|ZP_07471574.1| dimethyladenosine transferase [Brucella sp. NF 2653] gi|264662395|gb|EEZ32656.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|306406142|gb|EFM62387.1| dimethyladenosine transferase [Brucella sp. NF 2653] Length = 276 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/274 (50%), Positives = 183/274 (66%), Gaps = 2/274 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+++N L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSIDNLP-PLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGA-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQCEVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPREAPLPCRAEKLGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALAN 272 >gi|319405488|emb|CBI79107.1| dimethyladenosine transferase [Bartonella sp. AR 15-3] Length = 276 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 139/269 (51%), Positives = 190/269 (70%), Gaps = 2/269 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ YK+ K +GQNF+L+LN+ KIA +G+++G V+EIG GPG LT+ LL G Sbjct: 9 LRNVINKYKLQANKSLGQNFILNLNLTTKIAHQAGNIEGKPVLEIGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128 A V IE+D++ P L +I +P +L++I +DALK DF K F RIIANLPYN Sbjct: 69 A-IVTAIERDERCMPALLEIKEHYPQKLKLIFNDALKEDFSKLFEAYPEKPRIIANLPYN 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SP+YGRLS+LTGWR+ A + F Sbjct: 128 IGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWRSIAKIAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 DI P F P PKVTS+V+H IP P+ C + L +T+ AFG+RRK LRQSLK +GG+ Sbjct: 188 DIPPQAFIPEPKVTSSVVHIIPRSQPLACSTKKLSLVTKIAFGQRRKMLRQSLKTIGGKT 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL +AGI+ RAE LSI +F + N++T Sbjct: 248 LLEKAGIDGTRRAETLSIFEFVTLANLIT 276 >gi|319898726|ref|YP_004158819.1| dimethyladenosine transferase [Bartonella clarridgeiae 73] gi|319402690|emb|CBI76236.1| dimethyladenosine transferase [Bartonella clarridgeiae 73] Length = 276 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 137/269 (50%), Positives = 188/269 (69%), Gaps = 2/269 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ +K+ K +GQNF+ DLN+ KIA +G+++G ++EIG GPG LT+ LL G Sbjct: 9 LRNVINTHKLQANKSLGQNFIFDLNLTTKIAHQAGNIEGKPILEIGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128 A V IE+D++ P L +I +P +L++I +DALK DF K F RIIANLPYN Sbjct: 69 A-IVTAIERDERCMPALLEIEKHYPQKLKLIFNDALKQDFSKLFEAYPEKPRIIANLPYN 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SP+Y RLS+LTGWR+ A + F Sbjct: 128 IGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYSRLSILTGWRSIAKIAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 DI P F P PKVTS+V+H IP L P+ C + L +T+ AFG+RRK LRQS K +GGE Sbjct: 188 DIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSFKTIGGET 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL +AGI+ RAE LSI +F + N++T Sbjct: 248 LLEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|256060807|ref|ZP_05450967.1| dimethyladenosine transferase [Brucella neotomae 5K33] gi|261324799|ref|ZP_05963996.1| dimethyladenosine transferase [Brucella neotomae 5K33] gi|261300779|gb|EEY04276.1| dimethyladenosine transferase [Brucella neotomae 5K33] Length = 276 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 134/265 (50%), Positives = 178/265 (67%), Gaps = 1/265 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG LT+ LL G Sbjct: 9 LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V IE+D + L +I++ +P RL II DAL+ DF F RI+ANLPYN+ Sbjct: 69 A-YVTAIERDDRCLEALTEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S YGRL VL GWRT+A + FD Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDRYGRLGVLAGWRTQAKIAFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P PKV S+V+H +P P PC E+L +ITQ AFG+RRK LRQSLK +GG L Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPPPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L + GI+ RAE LS+E+F + N Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272 >gi|328544016|ref|YP_004304125.1| ribosomal RNA small subunit methyltransferase A [polymorphum gilvum SL003B-26A1] gi|326413760|gb|ADZ70823.1| Ribosomal RNA small subunit methyltransferase A [Polymorphum gilvum SL003B-26A1] Length = 283 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 129/267 (48%), Positives = 180/267 (67%), Gaps = 3/267 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++ LD TV+EIG GPG LT+ LL G Sbjct: 10 LREVIRAHGLDARKSLGQNFLLDLNLTSRIARAAAPLDACTVVEIGPGPGGLTRALLAAG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +VI IEKD++ P L +I+ ++P RL +++ DAL++D P++I+ANLPYN+ Sbjct: 70 AGRVIAIEKDRRCLPALAEIADRYPGRLTVVEGDALEID-AATLAAGEPVKIVANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NWI+ WPPFW SLTL+FQ+EV ERI A YGRL VL GWRT+A ++FD Sbjct: 129 GTQLLINWITTPGWPPFWSSLTLMFQREVAERIVAAPGDKAYGRLGVLAGWRTQARILFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247 ISP F P PKVTS V+ +P + P+PC L++L+++T AFG+RRK LR SLK L E Sbjct: 189 ISPQAFTPPPKVTSAVVQLVPRVEPLPCSLKALERVTAAAFGQRRKMLRASLKTLDPQAE 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 L+ +AG+ RAE + I F + Sbjct: 249 RLIEEAGLIPTARAEEIDIAGFVALAE 275 >gi|49474096|ref|YP_032138.1| dimethyladenosine transferase [Bartonella quintana str. Toulouse] gi|62900523|sp|Q6G052|RSMA_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49239600|emb|CAF25957.1| Dimethyladenosine transferase [Bartonella quintana str. Toulouse] Length = 276 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 138/268 (51%), Positives = 188/268 (70%), Gaps = 2/268 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ Y + K +GQNFL DLN+ KIA +G+++G VIE+G GPG LT+ LL G Sbjct: 9 LREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128 A VI IE+D++ P L I +P +L++I +DALK +F K F RIIANLPYN Sbjct: 69 AL-VIAIERDERCIPALLAIEKHYPKKLKLICNDALKQNFSKLFETYPEKPRIIANLPYN 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT+LL NW+ + WPPF+ES+TL+FQ+EV +RITA+ S +YGRLSVLTGWRT A + F Sbjct: 128 IGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSAYYGRLSVLTGWRTTAKIAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 D+ P F P+PK+TS+V+H IP + P+ C + L +T+ AFG+RRK LRQ+LK LGGE Sbjct: 188 DVPPQAFIPAPKITSSVVHIIPRIQPLTCSAQKLSFVTKTAFGQRRKMLRQNLKTLGGEM 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL +AGI+ RAE LSI +F + N++ Sbjct: 248 LLAKAGIDGTRRAETLSISEFVTLANLV 275 >gi|239831516|ref|ZP_04679845.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301] gi|239823783|gb|EEQ95351.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301] Length = 278 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 136/274 (49%), Positives = 184/274 (67%), Gaps = 2/274 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+++N L+ ++ + ++PKK +GQNFL DLN+ KIA +GSL VIE+G GPG Sbjct: 1 MSIDNLP-PLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGSLQEQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D++ L +I + +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGA-YVTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A ++ HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDTDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT + + FD+ P F P PKV S+V+H IP +P+PC +L +ITQ AFG+RRK LRQS Sbjct: 179 RTVSKISFDVPPQAFTPPPKVMSSVVHIIPREDPLPCDANALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKPVGGAELLAKTGIDGTRRAETLSVEEFVALAN 272 >gi|240850227|ref|YP_002971620.1| dimethyladenosine transferase [Bartonella grahamii as4aup] gi|240267350|gb|ACS50938.1| dimethyladenosine transferase [Bartonella grahamii as4aup] Length = 276 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/255 (54%), Positives = 181/255 (70%), Gaps = 2/255 (0%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL DLN+ KIA +G+++G V+EIG GPG LT+ LL GA V IE+D++ Sbjct: 22 KSLGQNFLFDLNLTSKIAHHAGNIEGKPVLEIGPGPGGLTRALLAKGA-IVTAIERDERC 80 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISAD 141 P L +I +P +L+II +DALK DF K F S RIIANLPYNIGT+LL NW+ + Sbjct: 81 IPALLEIEKHYPKKLKIICNDALKQDFSKLFETSPEKPRIIANLPYNIGTQLLLNWLLTE 140 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 WPPF+ES+TL+FQ+EV +RITA+ S HYGRLSVLTGWRT A + FD+ P F P PKV Sbjct: 141 PWPPFYESMTLMFQREVAKRITAKPQSTHYGRLSVLTGWRTTAKIAFDVPPQAFIPIPKV 200 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 TS+V+H IP P+ C + L +T+ AFG+RRK LRQ+LK LGGE LL +AGI+ RA Sbjct: 201 TSSVVHIIPRTQPLACSAQKLSLVTKTAFGQRRKMLRQNLKTLGGEVLLEKAGIDGTRRA 260 Query: 262 ENLSIEDFCRITNIL 276 E LS+ +F + +++ Sbjct: 261 ETLSVSEFVTLAHLV 275 >gi|121602690|ref|YP_988818.1| dimethyladenosine transferase [Bartonella bacilliformis KC583] gi|166221646|sp|A1US65|RSMA_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120614867|gb|ABM45468.1| dimethyladenosine transferase [Bartonella bacilliformis KC583] Length = 276 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 138/269 (51%), Positives = 185/269 (68%), Gaps = 2/269 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ Y + K +GQNFL DLN+ KIA +G+++G VIEIG GPG LT+ LL G Sbjct: 9 LREVINAYGLQANKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128 A V VIE+D++ P L +I +P +L +I DDALK D K RIIANLPYN Sbjct: 69 A-IVTVIERDKRCLPALLEIEKHYPKKLNLIFDDALKQDLSKLSETYPEKPRIIANLPYN 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SPHY RLSVL GWRT A + F Sbjct: 128 IGTQLLLNWLLTTSWPPFYESMTLMFQREVAKRITATPQSPHYSRLSVLAGWRTIAKIAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 D+ P F P+PKVTS+VI+ IP P+ C ++ L +T+ AFG++RK LRQSLK +GG+ Sbjct: 188 DVPPQAFIPAPKVTSSVINIIPRPQPLACSVQKLSLVTKVAFGEKRKMLRQSLKTIGGKE 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL +AGI+ RAE L I +F + N++T Sbjct: 248 LLEKAGIDETRRAETLLIPEFITLANLMT 276 >gi|240140378|ref|YP_002964857.1| dimethyladenosine transferase [Methylobacterium extorquens AM1] gi|240010354|gb|ACS41580.1| dimethyladenosine transferase [Methylobacterium extorquens AM1] Length = 296 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 128/278 (46%), Positives = 186/278 (66%), Gaps = 8/278 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ LL G Sbjct: 14 LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+ANLPYN+ Sbjct: 74 AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNV 132 Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184 T LL W+ ADT WPP+WES TL+FQ+EV ERI A + + +YGRL VL GWRT+A Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 T++FD++P F P PKVTS+V+H P P+PC + L+++T+ AFG+RRK LRQSLK Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLRQSLKAA 252 Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + LL AG+ RAE + + F + +L + Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVAGFVAMARVLEAGE 290 >gi|319408315|emb|CBI81968.1| dimethyladenosine transferase [Bartonella schoenbuchensis R1] Length = 276 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 137/269 (50%), Positives = 189/269 (70%), Gaps = 4/269 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ Y + K +GQNFL DLN+ KIA+ +G++ G VIE+G GPG LT+ LL G Sbjct: 9 LREVINTYGLQANKSLGQNFLFDLNLTSKIAQQAGNIAGKPVIEVGPGPGGLTRALLAKG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPY 127 A V IE+D++ L DI +P +L++I +DALK +F + F + P + IIANLPY Sbjct: 69 A-IVTAIERDERCLQALLDIEKHYPQKLKVICNDALKQNFSEIFE-AYPEKPHIIANLPY 126 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NIGT+LL NWI + WPPF++S+TL+FQ+EV +RITA +SPHYGRLSVL GWR A + Sbjct: 127 NIGTQLLLNWILTEPWPPFYKSMTLMFQREVAKRITATPHSPHYGRLSVLIGWRAIAKIA 186 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 FD+SP F P PKVTS+V+H IP P+PC + L +T+ AFG++RK LRQSLK +GGE Sbjct: 187 FDVSPKAFTPIPKVTSSVVHIIPRPQPLPCSTQKLSLVTKAAFGQKRKMLRQSLKTIGGE 246 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL ++GI+ RAE LSI +F + N++ Sbjct: 247 MLLEKSGIDGTRRAETLSISEFVSLANLV 275 >gi|298291091|ref|YP_003693030.1| dimethyladenosine transferase [Starkeya novella DSM 506] gi|296927602|gb|ADH88411.1| dimethyladenosine transferase [Starkeya novella DSM 506] Length = 283 Score = 282 bits (721), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 134/267 (50%), Positives = 184/267 (68%), Gaps = 2/267 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + K +GQNFLLDLN+ KIA ++G L+G+TVIE+G GPG LT+ LL LG Sbjct: 9 LREVIREHGLSALKSLGQNFLLDLNLTSKIARTAGKLEGLTVIEVGPGPGGLTRALLALG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 KVI IE+D++ L ++++ +P RLE+++ DAL D+ S+ I+ANLPYNI Sbjct: 69 TDKVIAIERDRRCIAALAEVAAHYPGRLEVVEGDALAADYAALIPASTRAAIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+++D WPP++ESLTL+FQ+EV ERI A S HYGRL+VLTGWR A + FD Sbjct: 129 ATPLLVGWLTSDPWPPWYESLTLMFQREVAERIVAASGSDHYGRLAVLTGWRANARIAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247 + F P PKVTS+V+H +P P+PC L++L+K+T+ AFG+RRK LRQSLK LG Sbjct: 189 VPASAFVPPPKVTSSVVHIVPREKPLPCELKALEKVTEAAFGQRRKMLRQSLKSLGVDAG 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 LL AGIE RAE + +E F + N Sbjct: 249 KLLAAAGIEPTERAERIPVEGFVALAN 275 >gi|304392010|ref|ZP_07373952.1| dimethyladenosine transferase [Ahrensia sp. R2A130] gi|303296239|gb|EFL90597.1| dimethyladenosine transferase [Ahrensia sp. R2A130] Length = 279 Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 130/268 (48%), Positives = 177/268 (66%), Gaps = 3/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ +++ KK +GQNFLLDLNI KIA ++G L TV+EIG GPG LT+ LL G Sbjct: 10 LREVIDRHELATKKSLGQNFLLDLNITMKIARAAGDLTRHTVLEIGPGPGGLTRALLASG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLP 126 A+ V+ IE+D + P+L +IS +P RL +I+ DAL ++ E+ S P++I ANLP Sbjct: 70 AKHVVAIERDARCIPVLAEISDAYPGRLTVIEGDALALNHEQVLADAGASGPVKIAANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI T L WI+ WPPFW +TL+FQ+EV +RI A+ +GRL VL GWR+ A + Sbjct: 130 YNIATPLFTGWITGTNWPPFWNGMTLMFQREVAQRICAEPGDKAWGRLGVLAGWRSHADI 189 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 FD+SP F+P PKVTS+V+ P P+P + L+KITQ AFG+RRK LRQSLK + G Sbjct: 190 AFDLSPQAFWPPPKVTSSVVMVQPRAEPLPVAVSDLEKITQAAFGQRRKMLRQSLKSMNG 249 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 + L GIE RAE L++EDF + N Sbjct: 250 ASRLEATGIEGTKRAEELAVEDFVALAN 277 >gi|163853045|ref|YP_001641088.1| dimethyladenosine transferase [Methylobacterium extorquens PA1] gi|163664650|gb|ABY32017.1| dimethyladenosine transferase [Methylobacterium extorquens PA1] Length = 296 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 128/278 (46%), Positives = 185/278 (66%), Gaps = 8/278 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ LL G Sbjct: 14 LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+ANLPYN+ Sbjct: 74 AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNV 132 Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184 T LL W+ ADT WPP+WES TL+FQ+EV ERI A + + +YGRL VL GWRT+A Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 T++FD++P F P PKVTS+V+H P P+PC + L+++T+ AFG+RRK LRQSLK Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLRQSLKAA 252 Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + LL AG+ RAE + + F + L + Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVVGFVAMARALEAGE 290 >gi|188583141|ref|YP_001926586.1| dimethyladenosine transferase [Methylobacterium populi BJ001] gi|179346639|gb|ACB82051.1| dimethyladenosine transferase [Methylobacterium populi BJ001] Length = 291 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 127/274 (46%), Positives = 185/274 (67%), Gaps = 8/274 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ LL G Sbjct: 14 LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+ANLPYN+ Sbjct: 74 AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNV 132 Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184 T LL W+ A+T WPP+WES TL+FQ+EV ERI A + + +YGRL VL GWRT+A Sbjct: 133 ATVLLTGWLGAETRDERWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 T++FD++P F P PKVTS+++H P P+PC + +L++IT+ AFG+RRK LRQSLK Sbjct: 193 TILFDVAPSAFVPPPKVTSSIVHLRPRPEPLPCRIAALERITRAAFGQRRKMLRQSLKAA 252 Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + LL AG+ RAE + + F + L Sbjct: 253 TPDPARLLAAAGLPETARAEEIPVAGFVALARAL 286 >gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46] gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46] Length = 285 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 123/271 (45%), Positives = 183/271 (67%), Gaps = 4/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++P+K +GQNFL DLN+ +IA ++G L G+TV+E+G GPG LT+ LL G Sbjct: 14 LREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLAGVTVVEVGPGPGGLTRALLAEG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V+ IE+D++ P L +I++ +P RL ++Q DAL D + P RI+ANLPYN+ Sbjct: 74 AARVVAIERDERALPALAEIAAHYPGRLTVVQADALAFDPRPLVG-AGPARIVANLPYNV 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMF 188 GT LL W++A+ WPP+++SLTL+FQ+EV ERI A +++ +YGRL VL GWRT+A ++F Sbjct: 133 GTALLTGWLAAEAWPPWFDSLTLMFQREVAERIVADERDRANYGRLGVLCGWRTQARILF 192 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 D+ P F P PKVTS+V+ +P P+PC + +L+ +T AFG+RRK LRQSL+ + Sbjct: 193 DVPPSAFVPPPKVTSSVVRLVPRAAPLPCRVRALEAVTGAAFGQRRKMLRQSLRAATPDP 252 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNILT 277 LL AGI RAE + + F + L Sbjct: 253 GPLLAAAGIPETARAEEVPVAGFVAMARALA 283 >gi|254562982|ref|YP_003070077.1| dimethyladenosine transferase [Methylobacterium extorquens DM4] gi|254270260|emb|CAX26254.1| dimethyladenosine transferase [Methylobacterium extorquens DM4] Length = 296 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 127/278 (45%), Positives = 185/278 (66%), Gaps = 8/278 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ LL G Sbjct: 14 LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+ANLPYN+ Sbjct: 74 AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-EGPVRIVANLPYNV 132 Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184 T LL W+ ADT WPP+W+S TL+FQ+EV ERI A + + +YGRL VL GWRT+A Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWDSATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 T++FD++P F P PKVTS+V+H P P+PC + L+++T+ AFG+RRK LRQSLK Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLRQSLKAA 252 Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + LL AG+ RAE + + F + L + Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGE 290 >gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] Length = 283 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 124/270 (45%), Positives = 180/270 (66%), Gaps = 4/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + ++P+K +GQNFL DLN+ +IA ++G LDG+TV+E+G GPG LT+ LL G Sbjct: 9 LREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLDGVTVVEVGPGPGGLTRALLAEG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +VI IE+D + P L +I++ +P RL +++ DAL D P RI+ANLPYN+ Sbjct: 69 AARVIAIERDPRALPALAEIAAHYPGRLTVVEADALAFDPRPLVG-GGPARIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMF 188 GT LL W++ + WPP+W+SLTL+FQ+EV ERI A + + +YGRL VL GWR +A ++F Sbjct: 128 GTPLLTGWLAGEDWPPWWDSLTLMFQREVAERIVADEHDRANYGRLGVLCGWRAQARILF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 D+ P F P PKVTS+V+ +P +P+PC + +L+ IT AFG+RRK LRQSL+ + Sbjct: 188 DVPPSAFVPPPKVTSSVVRLVPRPSPLPCRVGALEAITGAAFGQRRKMLRQSLRAATPDP 247 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL AGI RAE + + F + L Sbjct: 248 APLLAAAGIPETARAEEVPVAGFVAMAQAL 277 >gi|27379213|ref|NP_770742.1| dimethyladenosine transferase [Bradyrhizobium japonicum USDA 110] gi|33516930|sp|Q89MU0|RSMA_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27352364|dbj|BAC49367.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum USDA 110] Length = 284 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 124/271 (45%), Positives = 181/271 (66%), Gaps = 3/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++ LD T++EIG GPG LT+ LL LG Sbjct: 10 LREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGGLTRALLALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IE D++ P L+DIS+++P RLEI+ DA+ D N S +I+ANLPYNI Sbjct: 70 ARRVVAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLNGES-AKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T+LL NW++ + WPP+++ + L+FQ+EVGERI A+++ YGRL VL WR + ++FD Sbjct: 129 ATQLLINWLTTEPWPPWYDMMVLMFQREVGERIVAREDEEAYGRLGVLANWRCETKILFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 I+P F P PKVTS+V+ +P P+PC + L+++ AFG+RRK LRQSLK LG + Sbjct: 189 IAPSAFVPPPKVTSSVVRLVPRAEPLPCDRKMLEQVAAAAFGQRRKMLRQSLKSLGVDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L AG++ RAE + I F + L D Sbjct: 249 RLAQAAGVDATRRAETIPISGFVAMARELAD 279 >gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2] gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2] Length = 283 Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 127/280 (45%), Positives = 181/280 (64%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ Y + P+K +GQNFL DLN+ +IA ++G LD TVIEIG GPG Sbjct: 1 MSQIDDLPPLREVIRKYDLAPRKSLGQNFLFDLNLTARIARAAGPLDDATVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA++VI +E+D + P L+DI+ +P RLEI+ DA+ D + + R Sbjct: 61 LTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDFDPTTMLD-GARAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W++AD WPP+++ + L+FQ+EV ERI AQ+N YGRL VL W Sbjct: 120 IVANLPYNIATLLLTGWLTADPWPPWFDMMVLMFQREVAERIVAQENDDAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+ ++FDI+P F P PKVTS+V+ +P P+ C +L+++ AF +RRK LRQS Sbjct: 180 RTETKILFDIAPGAFVPPPKVTSSVVRLVPRAKPLSCSRRALEQVAAAAFNQRRKMLRQS 239 Query: 241 LKRLGGENLL--HQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L A I+ RAE +SI F + N L++ Sbjct: 240 LKPLGVDPALLTEAARIDPTRRAETVSIAGFVAMANRLSE 279 >gi|23010583|ref|ZP_00051221.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 263 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 122/259 (47%), Positives = 175/259 (67%), Gaps = 8/259 (3%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQNFL DLN+ +IA ++G+LDG+TV+E+G GPG LT+ LL GA++V+ IE+D + P Sbjct: 2 LGQNFLFDLNLTGRIARAAGALDGVTVVEVGPGPGGLTRALLAAGAQRVVAIERDPRALP 61 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT-- 142 L +I++ +P RL++I DA+ D P+RI+ANLPYN+ T LL W+ A+T Sbjct: 62 ALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNVATVLLTGWLGAETRD 120 Query: 143 --WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 WPP+WES TL+FQ+EV ERI A + + +YGRL VL GWRT+AT++FD++P F P P Sbjct: 121 EVWPPWWESATLMFQREVAERIVADEGDRANYGRLGVLCGWRTQATILFDVAPSAFVPPP 180 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIET 257 KVTS+++H P P+PC + L+++T+ AFG+RRK LRQSLK + LL AG+ Sbjct: 181 KVTSSIVHLRPRPAPLPCRIADLERVTRAAFGQRRKMLRQSLKAATPDPARLLAAAGLPE 240 Query: 258 NLRAENLSIEDFCRITNIL 276 RAE + + F + L Sbjct: 241 TARAEEIPVAGFVALARAL 259 >gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] Length = 286 Score = 268 bits (685), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 126/275 (45%), Positives = 181/275 (65%), Gaps = 3/275 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+L +IA ++G LDG TVIEIG GPG LT+ LL LG Sbjct: 10 LRDVIKRHDLSARKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGGLTRALLALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KVI IE+D++ L++I++ +P RLEI+ DA D + +I+ANLPYNI Sbjct: 70 AAKVIAIERDERALGALQEIAAHYPGRLEIVCADATIYDPRPLLG-GARAKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+S + WPP+++++ L+FQ+EV ERI A+++ YGRL+VL WR + ++FD Sbjct: 129 ATPLLIGWLSIEPWPPWYDTMVLMFQREVAERIVAREDDEAYGRLAVLANWRAETKLLFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 ISP F P PKVTS+V+ +P P PC L+++ AFG+RRK LRQSLK LG + Sbjct: 189 ISPAAFVPQPKVTSSVVRLVPRETPEPCDRRMLEQVAAAAFGQRRKMLRQSLKPLGVDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L AG++ RAE +++ F + LTD + I Sbjct: 249 RLAAAAGVDPTRRAETIAVSGFVAMARELTDIRAI 283 >gi|148255223|ref|YP_001239808.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1] gi|166221648|sp|A5EIA8|RSMA_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146407396|gb|ABQ35902.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1] Length = 286 Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 123/274 (44%), Positives = 180/274 (65%), Gaps = 3/274 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ +++ +K +GQNFLLDLN+ +IA ++G L+ TV+EIG GPG LT+ LL LG Sbjct: 10 LREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI +E D++ P L+ I+ ++P RLEI+ DA D + S+ +I+ANLPYNI Sbjct: 70 ARHVIAVEHDERAIPALQAIAERYPGRLEIVCTDARTFDVRPYLG-STKAKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+SA+ WPP+++ + L+FQ+EV ERI A++N YGRL VL WR + ++FD Sbjct: 129 ATHLLIGWLSAEPWPPWYDMMVLMFQREVAERIVARENEEAYGRLGVLANWRCETKILFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 ISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQSLK L + Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRTAPEPCDRRALEQVAAAAFGQRRKMLRQSLKSLPTDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L AG++ RAE + + F + LT+++D Sbjct: 249 RLAAAAGVDPTRRAETIPVSGFVAMARELTNSRD 282 >gi|154253780|ref|YP_001414604.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1] gi|154157730|gb|ABS64947.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1] Length = 281 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/276 (46%), Positives = 182/276 (65%), Gaps = 11/276 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ Y + P+K +GQNFLLDLN+ +IA ++G LDG V+E+G GPG LT+ LL G Sbjct: 11 LREVIARYGLAPQKSLGQNFLLDLNLTGRIARAAGVLDGYDVVEVGPGPGGLTRALLDNG 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+VI IE+D++ L++IS+ +P RL I++ DAL+VD + ++SP RI+ANLPYN+ Sbjct: 71 ARRVIAIERDRRCIAALEEISAAYPGRLVIVEGDALEVDMKSL--VTSPARIVANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+ + WP +++SLTL+FQ+EV ERI AQ YGRL+VL WR KA ++FD Sbjct: 129 GTPLLVGWLQTEPWPAWFDSLTLMFQREVAERIVAQPGGKAYGRLAVLAQWRAKAQILFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + F P P VTS+V+ IP P+ P LE+ + AFG+RRK LR SL+ L Sbjct: 189 VDRRAFTPPPSVTSSVVELIPRAVPLAEANPRVLEA---VVAAAFGQRRKMLRSSLRTLT 245 Query: 246 GEN--LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + LL +AGI+ RAE LS+E FC + + Sbjct: 246 PHSLPLLEKAGIDPTQRAEELSVEQFCALARAFAEK 281 >gi|218531855|ref|YP_002422671.1| dimethyladenosine transferase [Methylobacterium chloromethanicum CM4] gi|218524158|gb|ACK84743.1| dimethyladenosine transferase [Methylobacterium chloromethanicum CM4] Length = 296 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 128/278 (46%), Positives = 184/278 (66%), Gaps = 8/278 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ LL G Sbjct: 14 LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+ANLPYN+ Sbjct: 74 AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-EGPVRIVANLPYNV 132 Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184 T LL W+ ADT WPP+WES TL+FQ+EV ERI A + + +YGRL VL GWRT+A Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 T++FD++P F P PKVTS+V+H P P PC + L+++T+ AFG+RRK LRQSLK Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPPPCRIADLERVTRAAFGQRRKMLRQSLKAA 252 Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + LL AG+ RAE + + F + L + Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGE 290 >gi|170746986|ref|YP_001753246.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM 2831] gi|226732597|sp|B1LVB8|RSMA_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170653508|gb|ACB22563.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM 2831] Length = 292 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/277 (44%), Positives = 179/277 (64%), Gaps = 4/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + PKK +GQNFL DLN+ +IA ++G L G+TV+E+G GPG Sbjct: 1 MSAGDGLPPLREVVARHGLEPKKALGQNFLYDLNLTGRIARAAGPLAGVTVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V+ IE+D + P L +I++ +P RLE++ DAL D +P R Sbjct: 61 LTRALLAEGAARVVAIERDPRALPALAEIAAHYPGRLEVVDADALAFDPRPLVG-DAPAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTG 179 I+ANLPYN+GT LL W+ + WPP+W+ L+FQ+EV ERI A + YGRL VL G Sbjct: 120 IVANLPYNVGTALLTGWLDGEAWPPWWDQAVLMFQREVAERIVAGPEERADYGRLGVLCG 179 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WRT+A ++FD+SP F P PKVTS+V+ +P P+PC +L+ +T+ AFG+RRK LRQ Sbjct: 180 WRTEAEILFDVSPSAFVPPPKVTSSVVRLVPRAQPLPCRAGALEAVTRAAFGQRRKMLRQ 239 Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITN 274 SLK L +LL AG+ RAE + + F + N Sbjct: 240 SLKALTPAAGDLLAAAGLSETARAEEIPVAGFVDLAN 276 >gi|99080785|ref|YP_612939.1| dimethyladenosine transferase [Ruegeria sp. TM1040] gi|118600897|sp|Q1GI39|RSMA_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|99037065|gb|ABF63677.1| dimethyladenosine transferase [Ruegeria sp. TM1040] Length = 280 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 128/279 (45%), Positives = 180/279 (64%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MSAIDNLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GARK++ IEKDQ+ P L+DI++ +P RLE+I DAL++D +++ PIR Sbjct: 61 LTRGLLSEGARKILAIEKDQRCLPALEDIAAAYPGRLEVINGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A + + P F P PKV+S V+H P P L ++ AF +RRK LR Sbjct: 179 RAEARIALSLPPGAFTPPPKVSSAVVHLTALPEPRYPADAAILSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SLK + E+ L+ AGI RAE +S+EDFC + L Sbjct: 239 SLKGVSPQIEDHLNAAGIPPTERAEQVSVEDFCALARSL 277 >gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1] gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1] Length = 287 Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 124/273 (45%), Positives = 182/273 (66%), Gaps = 3/273 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++G LDG+TV+EIG GPG LT+ LL G Sbjct: 10 LREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDGVTVVEIGPGPGGLTRALLATG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++VI IE+D++ L++I++ +P RLEI+ DA++ D N RI+ANLPYNI Sbjct: 70 AKRVIAIERDERALGALEEIAAHYPGRLEIVSGDAMEFDPRPLLN-GERARIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ A+ WPP++E + L+FQ+EV +RI A ++ YGRL+VL WR + M+FD Sbjct: 129 ATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHQDDDAYGRLAVLANWRAETQMLFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 ISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQSLK LG + Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQSLKSLGVDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L AGI+ RAE + + F + N L++++ Sbjct: 249 QLTAAAGIDPARRAETVPVSGFVAMANELSNSR 281 >gi|83952311|ref|ZP_00961043.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM] gi|83837317|gb|EAP76614.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM] Length = 280 Score = 265 bits (677), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 124/271 (45%), Positives = 181/271 (66%), Gaps = 5/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + ++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL G Sbjct: 10 LRQVINDHDLVARKSLGQNFLLDLNLTAKIARQAGDLSTADVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L +I++ +P RLE+I DAL+VD +++ PI I ANLPYN+ Sbjct: 70 ARRVLAIEKDSRCLPALAEIAAAYPGRLEVINGDALEVD--PLAHLTPPIHIAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERITA+ S YGRL++L WR +A ++ Sbjct: 128 GTELLVRWLTPQEWPPFWQSLTLMFQREVAERITAKPGSKAYGRLALLAQWRAEARIVMS 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P+PKV+S V+H P P + L+++ +AF +RRK LR +LK + Sbjct: 188 LPPEAFTPAPKVSSAVVHLRALPEPRFPADPKMLERVVAQAFNQRRKMLRAALKSMAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E+ L+ AGIE RAE LS+E+FC + +++ Sbjct: 248 EDRLNAAGIEPTRRAETLSLEEFCALARVMS 278 >gi|254473433|ref|ZP_05086830.1| dimethyladenosine transferase [Pseudovibrio sp. JE062] gi|211957549|gb|EEA92752.1| dimethyladenosine transferase [Pseudovibrio sp. JE062] Length = 279 Score = 265 bits (676), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 124/267 (46%), Positives = 175/267 (65%), Gaps = 4/267 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQNFLLDLN+ +IA S+G L TV+E+G GPG LT+ LL G Sbjct: 10 LREVIAEHGLDARKSLGQNFLLDLNLTSRIARSAGDLSDCTVVEVGPGPGGLTRALLAAG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI IEKD + P L IS + +LE+I+ DALK + + + PI+IIANLPYN+ Sbjct: 70 AKKVIAIEKDTRCLPALAQISEHYNGKLEVIEGDALKYNPAELAD--GPIKIIANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL W++ + WPPFW SLTL+FQKEVG+RI A+ YGRL VL WR ++FD Sbjct: 128 GTQLLLGWLTTEEWPPFWSSLTLMFQKEVGQRIVAETGDKAYGRLGVLANWRCHTDILFD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247 ++P F P PKVTS V+ P P+ C L++L+++T AFG+RRK LR SLK L E Sbjct: 188 LNPKAFTPPPKVTSAVVQLHPREKPLDCPLKALERVTAHAFGQRRKMLRASLKGLKPNAE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 + AG++ RAE + + F + + Sbjct: 248 ARIEAAGLKPTARAEEIDVTGFVALAH 274 >gi|259418690|ref|ZP_05742607.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B] gi|259344912|gb|EEW56766.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B] Length = 280 Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 128/273 (46%), Positives = 174/273 (63%), Gaps = 5/273 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ +++ +K +GQNFLLDLN+ KIA +G L G V+EIG GPG LT+ LL+ G Sbjct: 10 LREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLLSEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKV+ IEKDQ+ P L +I+ HP RLE+I DALK+D +++ PIR+ ANLPYN+ Sbjct: 70 ARKVLAIEKDQRCLPALAEIAEAHPGRLEVINGDALKID--PLAHLTPPIRVAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L WR +A + Sbjct: 128 GTELLVRWLTPKDWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQWRAEAKIALS 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P L ++ AF +RRK LR SLK + Sbjct: 188 LPPGAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRASLKGVSPQI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 E+ L+ AGI RAE +S+E FC + L Sbjct: 248 EDHLNAAGIPPTERAEQVSLEGFCALARSLAQT 280 >gi|310816142|ref|YP_003964106.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25] gi|308754877|gb|ADO42806.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25] Length = 281 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 127/271 (46%), Positives = 178/271 (65%), Gaps = 5/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + KK +GQNFLLDLN+ KIA +G L G V+EIG GPG LT+ LL G Sbjct: 10 LREVIATHGLSAKKALGQNFLLDLNLTAKIARQAGDLSGSDVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD++ P L++I+ +P R IQ DAL+VD +++ PIR+ ANLPYNI Sbjct: 70 ARRVLSIEKDERCIPALEEIADAYPGRFSYIQGDALQVD--PLAHLTPPIRVAANLPYNI 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERITA+ S HYGRL++L+ WR A ++ D Sbjct: 128 GTELLIRWLTPPQWPPFWQSLTLMFQREVAERITAKPGSNHYGRLAILSQWRADARIVLD 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P L+ L+++T AFG+RRK LR SL+ L Sbjct: 188 LPPQAFTPPPKVSSAVVHLTALPAPRFPADLKVLERVTAAAFGQRRKMLRASLRGLAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E++L I+ RAE + +E FC + + Sbjct: 248 EDILTSVDIKPTERAEQIDLEHFCALARAIA 278 >gi|114766148|ref|ZP_01445152.1| dimethyladenosine transferase [Pelagibaca bermudensis HTCC2601] gi|114541608|gb|EAU44650.1| dimethyladenosine transferase [Roseovarius sp. HTCC2601] Length = 278 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/280 (45%), Positives = 179/280 (63%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + KK +GQNFLLDLN+ KIA +G L G+ V+EIG GPG Sbjct: 1 MSAIDGLPPLREVIASHDLSAKKSLGQNFLLDLNLTAKIARQAGDLSGMDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GARKV+ IEKD + P L +I+ +P+RLE+I DAL++D +++ PI Sbjct: 61 LTRGLLAEGARKVLAIEKDTRCLPALAEIAGAYPDRLEVISGDALQID--PLAHLTPPIA 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ + WPPFW++LTL+FQ+EV ERI AQ S YGRL+VL W Sbjct: 119 ICANLPYNVGTELLVRWLTPEDWPPFWQTLTLMFQREVAERIVAQPGSKAYGRLAVLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT+A ++ + P F P PKV+S V+H P P +L+++ AF +RRK LR Sbjct: 179 RTEARIVLSLPPGAFTPPPKVSSAVMHLRALPEPRFPAERAALERVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L E+ L AGI RAE +S+E FC + L Sbjct: 239 ALKGLAPDIEDRLEAAGIAPTERAEQVSLEQFCALARALA 278 >gi|119383648|ref|YP_914704.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222] gi|166221685|sp|A1B0G4|RSMA_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119373415|gb|ABL69008.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222] Length = 282 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/280 (46%), Positives = 175/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + KK +GQNFLLDLN+ KIA ++G L G VIE+G GPG Sbjct: 1 MSAIDGLPPLREVIARHDLRAKKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD + P L +I++ +P RLE+I DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W++ WPPFW+SLTL+FQKEV ERI AQ YGRL+VL W Sbjct: 119 IVANLPYNVGTELLIRWLTPAAWPPFWQSLTLMFQKEVAERIVAQPGGKAYGRLAVLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT+A ++ + P F P+PKV S V+H P P L ++ F +RRK LR Sbjct: 179 RTEARIVMTLPPEAFVPAPKVHSAVVHLTALPGPRYPADPAVLNRVVAAGFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E LL QAGI RAE + +E FC + L Sbjct: 239 SLKGLHPEIEALLIQAGIAPTARAEEIGLEQFCALARGLA 278 >gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] Length = 282 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 123/280 (43%), Positives = 176/280 (62%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ Y + +K +GQNFL DLN+ +IA ++G LD +TVIEIG GPG Sbjct: 1 MSQIDDLPPLREVIRKYDLFARKSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA++VI +E+D++ P L++I+ ++P RLEII DA D R Sbjct: 61 LTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHGDATTFDPTPLLQ-GERAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+S + WPP+++ + L+FQ+EV ERI A +N YGRL VL W Sbjct: 120 IVANLPYNIATLLLTGWLSVEPWPPWFDMMVLMFQREVAERIVATENDEAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDI+P F P PKV S+V+ P P+ C +L+++T AF +RRK LRQS Sbjct: 180 RAETKILFDIAPGAFVPPPKVMSSVVRLAPRAAPLACSRRALEQVTAAAFNQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L AG++ RAE +SI F + N L + Sbjct: 240 LKALGVDPAALAEAAGVDPTRRAETVSIAGFVAMANRLIE 279 >gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009] gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1] gi|62900541|sp|Q6N5B4|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732615|sp|B3Q9S4|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009] gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1] Length = 287 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 124/275 (45%), Positives = 181/275 (65%), Gaps = 3/275 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++G L+G+TV+EIG GPG LT+ LL G Sbjct: 10 LREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGGLTRALLATG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++VI IE+D++ L++I++ +P RL+II DA++ D N RI+ANLPYNI Sbjct: 70 AKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFDPRPLLN-GDRARIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ A+ WPP++E + L+FQ+EV +RI A + YGRL+VL WR + M+FD Sbjct: 129 ATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHHDDDAYGRLAVLANWRAETQMLFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 ISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQSLK LG + Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQSLKSLGVDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L AGI+ RAE + + F + N L +++ I Sbjct: 249 QLTAAAGIDPARRAETVPVSGFVAMANELANSRAI 283 >gi|294678211|ref|YP_003578826.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003] gi|294477031|gb|ADE86419.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003] Length = 280 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 123/271 (45%), Positives = 177/271 (65%), Gaps = 5/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ ++++ KK +GQNFLLDLN+ KIA ++G L G V+E+G GPG LT+ LL G Sbjct: 10 LREVIATHELVAKKALGQNFLLDLNLTAKIARAAGDLTGCDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ +EKD + P L +I++ +P RLE+I DAL VD +++ PIRI ANLPYN+ Sbjct: 70 ARRVLAVEKDSRCLPALAEIAAHYPGRLEVINGDALAVDV--LAHLTPPIRIAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQKEV ERI A+ + HYGRL++L WR +A ++ Sbjct: 128 GTELLIRWLTPAVWPPFWQSLTLMFQKEVAERIVAKPGTDHYGRLALLAQWRAEAKIVMV 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P+PKV S V+H P P L+++ F +RRK LR SLK + Sbjct: 188 LPPEAFTPAPKVHSAVVHLTALPAPRYPADPAVLERVVAAGFNQRRKMLRSSLKGVHPRI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + LL +AGI RAE +S+E FC + ++ Sbjct: 248 DALLEEAGIPPTERAERVSLEQFCHLARLVA 278 >gi|146340299|ref|YP_001205347.1| dimethyladenosine transferase [Bradyrhizobium sp. ORS278] gi|166221649|sp|A4YT90|RSMA_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146193105|emb|CAL77116.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium sp. ORS278] Length = 286 Score = 261 bits (667), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 124/274 (45%), Positives = 178/274 (64%), Gaps = 3/274 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ +++ +K +GQNFLLDLN+ +IA ++G L+ TV+EIG GPG LT+ LL LG Sbjct: 10 LREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI +E D++ P L+ I+ ++P RLEI+ DA D + S+ +I+ANLPYNI Sbjct: 70 ARHVIAVEHDERAIPALRTIADRYPGRLEIVYTDARTFDVRPYLG-STKAKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+SA+ WPP++E + L+FQ+EV ERI A +N YGRL VL WR + ++FD Sbjct: 129 ATHLLIGWLSAEPWPPWYEMMVLMFQREVAERIVATENEEAYGRLGVLANWRCETKILFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247 ISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQSLK L Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRPAPEPCDRRALEQVAAAAFGQRRKMLRQSLKSLPADPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L AGI+ RAE + + F + LT++++ Sbjct: 249 RLAAAAGIDPTRRAETIPVSGFVAMARELTNSRN 282 >gi|159043734|ref|YP_001532528.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12] gi|189028806|sp|A8LI73|RSMA_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157911494|gb|ABV92927.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12] Length = 280 Score = 261 bits (667), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 126/268 (47%), Positives = 171/268 (63%), Gaps = 5/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ +K+ KK +GQNFLLDLN+ +IA G L G V+E+G GPG LT+ LL G Sbjct: 10 LREVIAAHKLSAKKSLGQNFLLDLNLTARIARVPGDLSGADVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKV+ IEKD + P L+ I++ +P RLE+I+ DAL+VD + +S PI I ANLPYN+ Sbjct: 70 ARKVLAIEKDARCLPALQQIAAAYPGRLEVIEGDALEVDATAY--LSPPIHIAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW +LTL+FQ+EV ERI A+ S YGRL++L WR +A + Sbjct: 128 GTELLVRWLTPPDWPPFWRTLTLMFQREVAERIVAKPGSKAYGRLAILAQWRAEAEIALT 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GG 246 + P F P+PKV S V+H P P L ++ AF +RRK LR SLK L G Sbjct: 188 LPPQAFIPAPKVHSAVVHLRARTEPRYPADAAVLSRVVATAFNQRRKMLRASLKGLTPGI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E+ L GI+ RAE LS+E+FC + Sbjct: 248 EDHLAAVGIDPTRRAETLSLEEFCALAR 275 >gi|163735800|ref|ZP_02143229.1| dimethyladenosine transferase [Roseobacter litoralis Och 149] gi|161390886|gb|EDQ15226.1| dimethyladenosine transferase [Roseobacter litoralis Och 149] Length = 280 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 124/280 (44%), Positives = 177/280 (63%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L++++ + + +K MGQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MTTIDNLPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +I++ +P RLE++ DAL++D ++ PIR Sbjct: 61 LTRGLLAQGARRVLAIEKDARCLPALAEIAAAYPGRLEVVNGDALEID--PLSALTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ +TWPP+W+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPETWPPYWQSLTLMFQREVAERIVAKPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV+S+V+H P P L K+ AF +RRK LR Sbjct: 179 RADAQIVMQLPPEAFTPPPKVSSSVVHITALPAPRYPADANVLSKVVAMAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK LG E+ L AGI+ RAE +S++ FC + + Sbjct: 239 ALKGLGPDIEDRLQAAGIKPTERAERVSLQGFCALARAVA 278 >gi|115525299|ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] gi|122295624|sp|Q07LF4|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115519246|gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] Length = 287 Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 124/275 (45%), Positives = 175/275 (63%), Gaps = 3/275 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++G L+ TVIE+G GPG LT+ LL LG Sbjct: 10 LREVIQRHDLSARKSLGQNFLLDLNLTTRIARAAGPLEDSTVIEVGPGPGGLTRALLALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++VI IE+D++ L +IS+ +P RL+I+ DA+ D + +I+ANLPYNI Sbjct: 70 AKRVIAIERDERALGALAEISAHYPGRLDIVCADAMTYDPRPLLG-GARAKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ D WPP+++ L L+FQ+EV ERI A ++ YGRL VL WR + M+FD Sbjct: 129 ATPLLIGWLETDPWPPWYDCLVLMFQREVAERIVATEDDEAYGRLGVLANWRAQTKMLFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 ISP F P PKVTS+V+ IP P PC L+++T AFG+RRK LRQSLK LG + Sbjct: 189 ISPAAFVPPPKVTSSVVRLIPRDEPEPCNRRMLEQVTAAAFGQRRKMLRQSLKSLGVDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L AG+E RAE + + F + L + + I Sbjct: 249 RLAAAAGVEPTRRAETIPVAGFVAMARELANIRGI 283 >gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] Length = 287 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/274 (44%), Positives = 180/274 (65%), Gaps = 3/274 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++G LD +TV+EIG GPG LT+ LL G Sbjct: 10 LRDVIKRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+VI IE+D++ L++I++ +P RLEI+ DA++ D + RI+ANLPYNI Sbjct: 70 ARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEFDPRPLLG-GARARIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ A+ WPP+++ + L+FQ+EV +RI A ++ YGRL+VL+ WR M+FD Sbjct: 129 ATPLLIGWLCAEPWPPWYDMMVLMFQREVAQRIVACEDDDAYGRLAVLSNWRCDTGMLFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 I+P F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQSLK LG + Sbjct: 189 IAPSAFVPQPKVTSSVVRLVPRSAPEPCNRAALEQVAAAAFGQRRKMLRQSLKALGVDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L AGI+ RAE + + F + N L D +D Sbjct: 249 RLAAAAGIDPTRRAETVPVSGFVAMANELIDIRD 282 >gi|218509347|ref|ZP_03507225.1| dimethyladenosine transferase [Rhizobium etli Brasil 5] Length = 215 Score = 258 bits (659), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 113/207 (54%), Positives = 151/207 (72%), Gaps = 1/207 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E+D + P L +I +P RLE+I+ DALK DFE P++IIANLPYN+ Sbjct: 70 AKKVIAVERDARCLPALAEIGDHYPGRLEVIEGDALKTDFESLAP-EGPVKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GWRT+A + FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGWRTEARLAFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + P F P PKVTSTV+H P NPIP Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRENPIP 215 >gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] Length = 287 Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 3/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++G L+ TVIEIG GPG LT+ LL +G Sbjct: 10 LRDVIKRHALSARKSLGQNFLLDLNLTARIARAAGPLEDATVIEIGPGPGGLTRALLAMG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++VI IE+D + L++IS ++P RL I+ DA + D + +I+ANLPYNI Sbjct: 70 AQRVIAIERDARALGALEEISGRYPGRLTIVNADATQFDSRPLLGTTR-AKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL +W+S + WPP+++++ L+FQ+EV ERI A++N YGRL+VL+ WR + ++FD Sbjct: 129 ATALLIDWLSVEPWPPWYDTMVLMFQREVAERIVARENEEAYGRLAVLSNWRAETKILFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 ISP F P PK+TS+V+ +P P C L+++ AFG+RRK LRQSLK L + Sbjct: 189 ISPAAFVPQPKITSSVVRLVPRDKPETCERRLLEQVAAAAFGQRRKMLRQSLKSLPADPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L AGIE RAE + I F + L D Sbjct: 249 RLTAAAGIEPTQRAETVPISGFAAMARELAD 279 >gi|146277163|ref|YP_001167322.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025] gi|166221694|sp|A4WRK3|RSMA_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|145555404|gb|ABP70017.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025] Length = 278 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 128/268 (47%), Positives = 172/268 (64%), Gaps = 6/268 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ KIA +G L G V+E+G GPG LT+ LL G Sbjct: 10 LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLKGSDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIRI+ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+S+ WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ WRT+ ++ Sbjct: 128 GTELLTRWLSSG-WPPFWESLTLMFQKEVAERIVARPGSKAYGRLALLSQWRTEPKIVLT 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P P + S V+HF P P L ++T AF +RRK LR SLK L Sbjct: 187 LPPEAFTPPPAIHSAVVHFTRLAGPRYPADAAVLSRVTAMAFNQRRKMLRSSLKGLAPDI 246 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E +L AGIE RAE LS+E FC + Sbjct: 247 ETVLRDAGIEPTQRAEELSLEAFCALAR 274 >gi|260576766|ref|ZP_05844751.1| dimethyladenosine transferase [Rhodobacter sp. SW2] gi|259021018|gb|EEW24329.1| dimethyladenosine transferase [Rhodobacter sp. SW2] Length = 280 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/268 (45%), Positives = 174/268 (64%), Gaps = 5/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + ++ KK +GQNFLLDLN+ +IA ++G L G V+E+G GPG LT+ LL G Sbjct: 10 LRAVIAAHDLVAKKQLGQNFLLDLNLTARIARAAGDLSGCDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ +EKD + P L +I++ +P RLE++Q DAL +D ++ PI+I+ANLPYN+ Sbjct: 70 ARRVLAVEKDARCLPALAEIAAAYPGRLEVMQGDALALDVAA--HLVPPIKIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQKEV ERI A+ YGRL++L+ WR ++ Sbjct: 128 GTELLIRWLTPAHWPPFWDSLTLMFQKEVAERIVAKPGPKAYGRLALLSQWRADPKIVLT 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P+PKV S V+HF P E+ L ++T AF +RRK LR SLK L Sbjct: 188 LPPEAFTPAPKVHSAVVHFRRLDAPRFAADEAVLGRVTAMAFNQRRKMLRSSLKALAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E L AGIE RAE +S+E FC + Sbjct: 248 EVRLRAAGIEPTARAEEISLEGFCALAR 275 >gi|84684875|ref|ZP_01012775.1| dimethyladenosine transferase [Maritimibacter alkaliphilus HTCC2654] gi|84667210|gb|EAQ13680.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2654] Length = 280 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/270 (45%), Positives = 173/270 (64%), Gaps = 5/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + ++ KK +GQNFLLDLN+ KIA +G L V+E+G GPG LT+ LL G Sbjct: 10 LREVIATHGLVAKKSLGQNFLLDLNLTAKIARQAGDLSACDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ +EKD + L +IS +P RLE++ DAL++D +++ PIRI+ANLPYN+ Sbjct: 70 ARRVLAVEKDARAMSALAEISEAYPGRLEVLNADALEID--PLAHLTPPIRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ TWPP W SLTL+FQKEV ERI A+ S YGRL++L+ WRT A ++ + Sbjct: 128 GTELLTRWLTPPTWPPAWSSLTLMFQKEVAERIVAKPKSKAYGRLAILSQWRTDARIVME 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GG 246 + P F P PK+ S V+H P P +L+++T AF +RRK LR SLK L G Sbjct: 188 LPPEAFTPPPKIRSAVVHLTALPEPRYPANAATLQRVTATAFQQRRKMLRASLKGLAPGI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E LL I+ RAE + +E FC + L Sbjct: 248 EALLESVDIKPTARAEEIDLEHFCALARAL 277 >gi|84500985|ref|ZP_00999220.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597] gi|84391052|gb|EAQ03470.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597] Length = 279 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/271 (44%), Positives = 172/271 (63%), Gaps = 5/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQNFLLDLN+ KIA +G L G V+EIG GPG LT+ LL G Sbjct: 10 LREVIATHGLAARKSLGQNFLLDLNLTAKIARQAGDLSGCDVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L +I++ +P RLE++ DAL+VD ++ PIRI+ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEIAAAYPRRLEVVNGDALEVD--PLTRLTPPIRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ D WPP+W+SLTL+FQ+EV ERI A+ YGRL++L WR +A + Sbjct: 128 GTELLVRWLTPDRWPPYWDSLTLMFQREVAERIVARPGGKAYGRLALLASWRAEARITLS 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P L+++ AF +RRK LR +LK L Sbjct: 188 LPPEAFTPPPKVSSAVVHLTALPEPRYPADPRVLERVVAMAFNQRRKMLRAALKGLAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E+ L A I RAE +S+E FC + ++ Sbjct: 248 EDRLRAASIAPTDRAETVSLEQFCALARAVS 278 >gi|217978375|ref|YP_002362522.1| dimethyladenosine transferase [Methylocella silvestris BL2] gi|217503751|gb|ACK51160.1| dimethyladenosine transferase [Methylocella silvestris BL2] Length = 288 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 125/275 (45%), Positives = 171/275 (62%), Gaps = 4/275 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ I++ + + KK +GQNFL DLN+ +IA ++G D ++E+G GPG LT+ LLT G Sbjct: 11 LREIVAAFGLDAKKSLGQNFLFDLNLTGRIARAAGPQDAALILEVGPGPGGLTRALLTEG 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKVI IE+D++ P L+ I+ +P RLEII DAL D + P RI ANLPYN+ Sbjct: 71 ARKVIAIERDERCLPALRQIADHYPGRLEIIAGDALGADVAALAGDARPARICANLPYNV 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMF 188 T LL WI ++ WPP+++ L L+FQ+EV ERI A YGRL+VL WR + ++F Sbjct: 131 ATALLTRWIESEPWPPWFDRLILMFQREVAERIVATPAQRAAYGRLAVLCNWRCETRILF 190 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 D+SP F P PKVTS+V+ P P+ C L +TQ AFG+RRK LRQSLK LG Sbjct: 191 DVSPSAFTPPPKVTSSVVELRPRAAPLACEARLLSLVTQAAFGQRRKMLRQSLKSLGADD 250 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L AG++ RAE + IE F + L + + Sbjct: 251 AAAILAAAGVDPTARAEEIDIEGFAALARALGERR 285 >gi|126739404|ref|ZP_01755097.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6] gi|126719504|gb|EBA16213.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6] Length = 291 Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 123/270 (45%), Positives = 172/270 (63%), Gaps = 5/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL G Sbjct: 20 LREVIETHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGGLTRGLLAEG 79 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ +EKD + P L +IS+ +P +LE+I DAL+VD +++ P+RI ANLPYN+ Sbjct: 80 ARRVLAVEKDARCMPALAEISTAYPGQLEVINGDALEVD--ALAHLTPPVRIAANLPYNV 137 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L WR A ++ Sbjct: 138 GTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLALLAQWRADARIVLA 197 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV S V+H P P +L ++ AF +RRK LR SLK + Sbjct: 198 LPPEAFSPPPKVHSAVVHLTALAEPRYPADAATLSRVIAAAFNQRRKMLRASLKSVAPNI 257 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L AGI+ RAE +S+E+FC + L Sbjct: 258 EDHLIAAGIKPTERAEQVSLEEFCALARSL 287 >gi|182677647|ref|YP_001831793.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633530|gb|ACB94304.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 297 Score = 254 bits (650), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 122/264 (46%), Positives = 163/264 (61%), Gaps = 4/264 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ Y + KK +GQNFL DLN+ +IA ++ ++EIG GPG LT+ LL G Sbjct: 16 LREVVATYGLAAKKALGQNFLFDLNLTGRIARAADPSKTALIVEIGPGPGGLTRALLAEG 75 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KVI IE+D++ P L +I++ +P RLE++ DAL D P RI ANLPYNI Sbjct: 76 APKVIAIEQDERCLPALAEIAAHYPGRLEVVAGDALTTDLGLLVASYRPARICANLPYNI 135 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMF 188 GT LL WI + WPP+++ L L+FQ+EV ERI A YGRL+VL WR + ++F Sbjct: 136 GTALLTRWIETEPWPPWFDRLVLMFQREVAERIVATPAQRADYGRLAVLCNWRCETRILF 195 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---G 245 D+SP F P PKVTS V+ +P P+ C E L +TQ AFG+RRK LRQSLK L G Sbjct: 196 DVSPSAFTPPPKVTSAVVELVPRAEPLTCDREKLSAVTQAAFGQRRKMLRQSLKSLLGGG 255 Query: 246 GENLLHQAGIETNLRAENLSIEDF 269 L+ AG+ LRAE + I F Sbjct: 256 TSALIEAAGLAPTLRAEEVDIAGF 279 >gi|296447968|ref|ZP_06889875.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b] gi|296254535|gb|EFH01655.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b] Length = 287 Score = 254 bits (649), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 123/278 (44%), Positives = 173/278 (62%), Gaps = 9/278 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + ++ K +GQNFL DLN+ +IA ++G L+G T++EIG GPG LT+ LL G Sbjct: 8 LREVVAKHGLMASKALGQNFLFDLNLTARIARAAGPLEGATIVEIGPGPGGLTRALLAEG 67 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLP 126 A +VI +E+D + P L++I +++P RL I++ DAL D + + P RI ANLP Sbjct: 68 AGRVIAVERDARCMPALREIEARYPGRLVIVEGDALAADPAQLVREHGLGGPARICANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKAT 185 YNI T LL WI A+ WP ++ L+FQ+EV RI A YGRL+VL GWRT+A Sbjct: 128 YNIATELLARWIEAEPWPSVFDRYVLMFQREVALRIVATPAQRADYGRLAVLCGWRTRAR 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-- 243 ++FD+SP F P PKVTS+V+ +P+ P C L ++T+ AFG+RRK LRQSLK Sbjct: 188 ILFDLSPSAFTPPPKVTSSVVELVPNATPAACEPRLLSQVTKAAFGQRRKMLRQSLKSLP 247 Query: 244 ---LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L +LL AGIE RAE + I F + L D Sbjct: 248 FPGLDVGSLLTAAGIEETRRAEEIDIGGFVALAQALAD 285 >gi|84516318|ref|ZP_01003678.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53] gi|84510014|gb|EAQ06471.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53] Length = 281 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/270 (44%), Positives = 171/270 (63%), Gaps = 5/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ Y + PKK +GQNFLLDLN+ +IA +G L G V+EIG GPG LT+ LL G Sbjct: 10 LREVIARYDLAPKKSLGQNFLLDLNLTARIARLAGDLAGADVLEIGPGPGGLTRGLLASG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L +I+++ P RL++I+ DAL +D ++ +PI++ ANLPYN+ Sbjct: 70 ARRVLAIEKDPRCLPALAEIAARFPGRLQVIEGDALAIDPLEYLQ--APIKVAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ YGRL++L WR A ++ + Sbjct: 128 GTELLVRWLTPQVWPPFWDSLTLMFQREVAERIVAQPGGKAYGRLALLAQWRADAKIVMN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P VF P PKV S V+H P P L + AF +RRK LR +LK + Sbjct: 188 LPPEVFSPPPKVHSAVVHLTALPAPRYPADPAVLNMVVAAAFNQRRKMLRSALKSVSPAI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L + GI+ RAE + +E FC + L Sbjct: 248 EDHLQEVGIKPTERAEQVGLEAFCALARSL 277 >gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] Length = 287 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/279 (44%), Positives = 176/279 (63%), Gaps = 3/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+M + L+ ++ + + +K +GQNFLLDLN+ +IA ++G L TV+EIG GPG Sbjct: 1 MSMIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTSRIARAAGPLQDATVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL +GA+ VI IE+D++ L++IS ++P RL II DA D + + Sbjct: 61 LTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDFDPRPLLGTTR-AK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+S + WPP+++ + L+FQ+EV ERI A++N YGRL VL+ W Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDVMVLMFQREVAERIVARENEDAYGRLGVLSNW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDISP F P P+VTS+V+ IP NP PC SL+++ AFG RRK LRQS Sbjct: 180 RAETKILFDISPAAFVPQPQVTSSVVRLIPRYNPEPCDRRSLEQVAAAAFGHRRKMLRQS 239 Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK L +L AGI+ RAE +SI F + L Sbjct: 240 LKSLPADPASLAAAAGIDPTRRAETVSISGFAAMARELA 278 >gi|254465027|ref|ZP_05078438.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I] gi|206685935|gb|EDZ46417.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I] Length = 280 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/280 (44%), Positives = 173/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L++I+ +P R E+I DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDTRCLPALQEIADAYPGRFEVINGDALEID--PLEHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFWESLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWESLTLMFQREVAERIVAQPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV+S V+H P P L ++ AF +RRK LR Sbjct: 179 RADARIVLSLPPGAFTPPPKVSSAVVHLDALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E L AGI RAE +S+E FC + L Sbjct: 239 SLKGISPDIEAHLTAAGIPPTERAEQVSLEAFCALARELA 278 >gi|114768929|ref|ZP_01446555.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255] gi|114549846|gb|EAU52727.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255] Length = 280 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/270 (47%), Positives = 171/270 (63%), Gaps = 5/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ I++ Y++ KK +GQNFLLDLN+ KIA +G L TV+EIG GPG LT+ LL G Sbjct: 12 LREIINEYQLSAKKSLGQNFLLDLNLTNKIARMAGDLTNHTVLEIGPGPGGLTRALLNSG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KV+ IE+D++ P L I NRLE+ DAL + E + N P++++ANLPYNI Sbjct: 72 AKKVLAIERDERLIPALNQIKEHFDNRLEVKYTDALNENIEAYLN--GPVKVVANLPYNI 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPP+WESLTL+FQKEV +RI A S YGRL++L WR A ++ + Sbjct: 130 GTELLVRWLTPSEWPPYWESLTLMFQKEVAKRIVATPGSKAYGRLALLVQWRCNAKIVME 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 ISP F P PKVTS V+H NP + L+KI AF +RRK LR SLK Sbjct: 190 ISPQAFTPPPKVTSAVVHIERLTNPRFEADGKVLEKIVAAAFNQRRKMLRVSLKAFSPII 249 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E++L GI+ RAE +S+E FC + +L Sbjct: 250 EDILIDVGIKPTQRAEEISLEQFCALARVL 279 >gi|254477153|ref|ZP_05090539.1| dimethyladenosine transferase [Ruegeria sp. R11] gi|214031396|gb|EEB72231.1| dimethyladenosine transferase [Ruegeria sp. R11] Length = 282 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 122/277 (44%), Positives = 175/277 (63%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ ++++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLTDCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GARKV+ +EKD + P L ++++ +P +LE+I+ DAL+V+ +++ PIR Sbjct: 61 LTRGLLAEGARKVLAVEKDSRCIPALAEVAAAYPGKLEVIEGDALEVN--PLTHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ + YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV S V+H P P +L K+ AF +RRK LR Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALEEPRFPADPGTLNKVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274 SLK + E+ L+ AGI RAE +S+E FC + Sbjct: 239 SLKSVSPDIEDHLNAAGIPPTERAEQVSLEAFCALAR 275 >gi|110680311|ref|YP_683318.1| dimethyladenosine transferase [Roseobacter denitrificans OCh 114] gi|118600895|sp|Q164G1|RSMA_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|109456427|gb|ABG32632.1| dimethyladenosine transferase, putative [Roseobacter denitrificans OCh 114] Length = 280 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 122/271 (45%), Positives = 171/271 (63%), Gaps = 5/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L++++ + + +K MGQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL G Sbjct: 10 LRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGGLTRGLLAQG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L +I++ +P RLE++ DAL++D ++ PIR+ ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEIAAVYPGRLEVMNGDALEID--PLSALTPPIRVAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPP+W+SLTL+FQ+EV ERI A+ S YGRL++L WR A ++ Sbjct: 128 GTELLVRWLTPQIWPPYWQSLTLMFQREVAERIVARPGSKAYGRLAILAQWRADARIVMQ 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S+V+ P P L K+ AF +RRK LR +LK LG Sbjct: 188 LPPDAFTPPPKVSSSVVQITALPAPRYPADPYVLSKVVAMAFNQRRKMLRAALKGLGPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E+ L AGIE RAE +S+E FC + + Sbjct: 248 EDRLLAAGIEPTERAERVSLEGFCALARAVA 278 >gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] Length = 287 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 119/271 (43%), Positives = 177/271 (65%), Gaps = 3/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +IA ++G LD +TV+EIG GPG LT+ LL G Sbjct: 10 LRDVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+VI IE+D++ L++I++ +P RLEI+ DA+ D +I+ANLPYNI Sbjct: 70 ARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDFDPTPLLG-GERAKIVANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ + WPP+++ + L+FQ+EV +RI A+++ YGRL+VL+ WR + M+FD Sbjct: 129 ATPLLIGWLCTEPWPPWYDMMVLMFQREVAQRIVAREDDDAYGRLAVLSNWRCETNMLFD 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 I+P F P PKVTS+V+ P P PC +L+++ AFG+RRK LRQSLK LG + Sbjct: 189 IAPSAFVPQPKVTSSVVRLAPRAAPEPCNRAALEQVAAAAFGQRRKMLRQSLKSLGVDPA 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L AGI+ RAE +++ F + N L + Sbjct: 249 RLAAAAGIDPTRRAETVAVSGFVAMANELNN 279 >gi|300023222|ref|YP_003755833.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC 51888] gi|299525043|gb|ADJ23512.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC 51888] Length = 290 Score = 251 bits (642), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 122/283 (43%), Positives = 178/283 (62%), Gaps = 3/283 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L+ ++ + + KK +GQNFLLDLN+ +KIA ++G + TV+EIG GPG Sbjct: 4 MTTADGLPPLRDVIERHGLAAKKSLGQNFLLDLNLTRKIARAAGDISKSTVVEIGPGPGG 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA+ VI IE+D + L +I +++P RL + DALK D+ + + P+ Sbjct: 64 LTRALLIEGAKNVIAIERDDRCLAALDEIVARYPGRLRVHAGDALKTDWTELIAGAHPVT 123 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYNI + LL +W+ + WPP+++ + L+FQ+EV ERI A + YGRLSVL + Sbjct: 124 IAANLPYNIASVLLVDWLETEPWPPWFDRMVLMFQREVAERIIAAPRTKAYGRLSVLAQY 183 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 RT+A + ++ P F P PKV+S V+ F P P P C + +L ++T AFG+RRK LR Sbjct: 184 RTEARIAINLPPEAFTPPPKVSSAVVDFRPIAEPEPRCRVSTLARVTAAAFGQRRKMLRS 243 Query: 240 SLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 SLK+L E LL + GI RAE+LS+E+F R+ I + Sbjct: 244 SLKQLTPMAELLLREGGIAPERRAEDLSVEEFARLAAIFDRGE 286 >gi|86138688|ref|ZP_01057261.1| dimethyladenosine transferase [Roseobacter sp. MED193] gi|85824748|gb|EAQ44950.1| dimethyladenosine transferase [Roseobacter sp. MED193] Length = 281 Score = 251 bits (641), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 120/277 (43%), Positives = 172/277 (62%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ ++++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIDTHQLLARKSLGQNFLLDLNLTSKIARQAGDLSECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P L +I+ +P RL++I DAL +D +++ P+R Sbjct: 61 LTRGLLAEGARRVLAVEKDSRCMPALAEIAEAYPGRLQLINGDALDID--PLEHLTPPVR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ + YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV S V+H P P +L ++ F +RRK LR Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALQEPRFPADAATLSRVIAAGFNQRRKMLRA 238 Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITN 274 SLK + G E+ L AGI RAE +S+E+FC + Sbjct: 239 SLKSVTPGIEDHLKAAGIAPTERAEQVSLEEFCALAR 275 >gi|221639320|ref|YP_002525582.1| dimethyladenosine transferase [Rhodobacter sphaeroides KD131] gi|254807881|sp|B9KST5|RSMA_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221160101|gb|ACM01081.1| Dimethyladenosine transferase [Rhodobacter sphaeroides KD131] Length = 278 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ KIA +G L V+E+G GPG LT+ LL G Sbjct: 10 LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIRI+ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLAA--RLTPPIRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ WRT ++ Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P P + S V+HF P P + L ++T AF +RRK LR SLK L Sbjct: 187 LPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E +L +AGIE RAE + +E FC + L Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|89054300|ref|YP_509751.1| dimethyladenosine transferase [Jannaschia sp. CCS1] gi|88863849|gb|ABD54726.1| dimethyladenosine transferase [Jannaschia sp. CCS1] Length = 305 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 117/272 (43%), Positives = 175/272 (64%), Gaps = 5/272 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQNFLLDLN+ KIA +G L + V+E+G GPG LT+ LL G Sbjct: 26 LRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLLAEG 85 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ +EKD + P+L +I + +P RL+++ DAL++D+ ++ +P +I+ANLPYN+ Sbjct: 86 ARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWAA--DLQAPRKIVANLPYNV 143 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ +WPP WESLTL+FQ+EV ERI AQ S YGRL++L+ WR ++ Sbjct: 144 GTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQWRADPRIVMG 203 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV S V+HF P P L ++ AFG+RRK LR +LK L Sbjct: 204 LPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRAALKGLAPDI 263 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E+ L AG++ RAE + +E FC + ++ D Sbjct: 264 EDRLVAAGLKPTDRAEQVPLEGFCALARVMED 295 >gi|332558339|ref|ZP_08412661.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rhodobacter sphaeroides WS8N] gi|332276051|gb|EGJ21366.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rhodobacter sphaeroides WS8N] Length = 278 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ KIA +G L V+E+G GPG LT+ LL G Sbjct: 10 LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIRI+ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ WRT ++ Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P P + S V+HF P P + L ++T AF +RRK LR SLK L Sbjct: 187 LPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E +L +AGIE RAE + +E FC + L Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|118600872|sp|Q28RD6|RSMA_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 289 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 117/272 (43%), Positives = 175/272 (64%), Gaps = 5/272 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQNFLLDLN+ KIA +G L + V+E+G GPG LT+ LL G Sbjct: 10 LRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ +EKD + P+L +I + +P RL+++ DAL++D+ ++ +P +I+ANLPYN+ Sbjct: 70 ARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWAA--DLQAPRKIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ +WPP WESLTL+FQ+EV ERI AQ S YGRL++L+ WR ++ Sbjct: 128 GTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQWRADPRIVMG 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV S V+HF P P L ++ AFG+RRK LR +LK L Sbjct: 188 LPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRAALKGLAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E+ L AG++ RAE + +E FC + ++ D Sbjct: 248 EDRLVAAGLKPTDRAEQVPLEGFCALARVMED 279 >gi|254462138|ref|ZP_05075554.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2083] gi|206678727|gb|EDZ43214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium HTCC2083] Length = 280 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/277 (42%), Positives = 177/277 (63%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L+ ++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MTTIDPLPPLRDVIERHELSARKSLGQNFLLDLNLTAKIARQAGDLSQCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GARKV+ IEKD + P L +I+ +PNRL +I+ DAL +D +++ PIR Sbjct: 61 LTRGLLSEGARKVLAIEKDARCLPALDEIAQAYPNRLHVIEGDALGLD--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + +NLPYN+GT LL W++ WPP+W+SLTL+FQ+EV +RI A+ S YGRL++L W Sbjct: 119 VASNLPYNVGTELLIRWLTPKQWPPYWQSLTLMFQREVAQRIVAEPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P F P PKV+S V+H P P ++L+++ AF +RRK LR Sbjct: 179 RCDARIVINLPPEAFSPPPKVSSAVVHLTALSEPRFPADFKTLERLVATAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274 SLK + E+ L AG+++ RAE + +E FC + Sbjct: 239 SLKSVSPDIEDHLRAAGLKSTERAEQIPLEGFCALAR 275 >gi|77463462|ref|YP_352966.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1] gi|119365057|sp|Q3J2B9|RSMA_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77387880|gb|ABA79065.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1] Length = 278 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 127/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + KK +GQNFLLDLN+ KIA +G L V+E+G GPG LT+ LL G Sbjct: 10 LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIRI+ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ WRT ++ Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P P + S V+HF P P + L ++T AF +RRK LR SLK L Sbjct: 187 LPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E +L +AGIE RAE + +E FC + L Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|254509515|ref|ZP_05121582.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11] gi|221533226|gb|EEE36214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11] Length = 280 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 5/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL+ G Sbjct: 10 LREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTECDVLEIGPGPGGLTRGLLSEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ARKV+ +EKD + L DI++ +P RLE+I DAL++D +++ PIR+ ANLPYN+ Sbjct: 70 ARKVVALEKDTRCIAALNDIAAAYPGRLEVINGDALEID--PLAHLTPPIRVAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L WR A + Sbjct: 128 GTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQWRADAHIAMS 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P +L ++ AF +RRK LR SL+ + Sbjct: 188 LPPGAFTPPPKVSSAVVHLSALPQPRYPADAATLSRVVAAAFNQRRKMLRASLRGIAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L AGI+ RAE + +E FC + ++ Sbjct: 248 EDRLIAAGIKPTDRAEQIPLESFCGLARMV 277 >gi|255262783|ref|ZP_05342125.1| dimethyladenosine transferase [Thalassiobium sp. R2A62] gi|255105118|gb|EET47792.1| dimethyladenosine transferase [Thalassiobium sp. R2A62] Length = 282 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 120/267 (44%), Positives = 166/267 (62%), Gaps = 5/267 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L ++ + + KK +GQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL G Sbjct: 10 LSEVIQTHGLAAKKSLGQNFLLDLNLTAKIARQAGDLSDCDVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L +IS +PNRL +I+ DAL D + +++ PIR+ ANLPYN+ Sbjct: 70 ARRVLAIEKDPRCLPALDEISQAYPNRLHVIEGDAL--DIDPLAHLTPPIRVSANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFWESLTL+FQ+EV +RI A+ S YGRL++L WR A ++ + Sbjct: 128 GTELLVRWLTPRDWPPFWESLTLMFQREVAQRIVAEPGSKAYGRLAILAQWRADARIVIN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P +L +I F +RRK LR SLK + Sbjct: 188 LPPEAFSPPPKVSSAVVHLTALAEPRYPADAATLNRIVAAGFNQRRKMLRASLKGVAPNI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRIT 273 + + AG+ RAE +S+E FC + Sbjct: 248 QGYIEAAGLRPTDRAEQISLEGFCALA 274 >gi|126462317|ref|YP_001043431.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029] gi|166221693|sp|A3PJZ3|RSMA_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126103981|gb|ABN76659.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029] Length = 278 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + K+ +GQNFLLDLN+ KIA +G L V+E+G GPG LT+ LL G Sbjct: 10 LREVIRAHGLSAKRQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIRI+ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ WRT ++ Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P P + S V+HF P P + L ++T AF +RRK LR SLK L Sbjct: 187 LPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E +L +AGIE RAE + +E FC + L Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|323135841|ref|ZP_08070924.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242] gi|322398932|gb|EFY01451.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242] Length = 300 Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 177/301 (58%), Gaps = 25/301 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--------------- 47 M++ L+ +++ + + KK +GQNFL DLN+ +IA ++G Sbjct: 1 MSDALPPLRDVVARHGLDAKKTLGQNFLFDLNLTARIARAAGPFTHAAEKSSDFSDKSMH 60 Query: 48 ---GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 TV+EIG GPG LT+ LL GAR VI +E+D + P L +I++ +P RL +++ DA Sbjct: 61 DETATTVVEIGPGPGGLTRALLAQGAR-VIAVERDARCLPALAEIAAHYPGRLTVVEGDA 119 Query: 105 LKVDFEKFF---NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 L++D + P RI ANLPYN+ T LL WI A+ WP ++ L+FQKEV R Sbjct: 120 LEIDAAELVRAHGAGGPARICANLPYNVATALLTRWIEAEPWPSVFDRYVLMFQKEVALR 179 Query: 162 ITAQ-KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220 I A YGRL+VL GWRTKA ++FD+SP F P PKVTS+V+ +P+ +P+ C Sbjct: 180 IVATPAQRADYGRLAVLCGWRTKARILFDVSPAAFTPPPKVTSSVVELVPNPSPLACDPR 239 Query: 221 SLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L ++TQ AFG+RRK LRQSL+ LG LL AGIE RAE + + F + N L Sbjct: 240 ALFRVTQAAFGQRRKMLRQSLRTLGVDASALLAAAGIEETKRAEEIDVPGFVALANALAS 299 Query: 279 N 279 + Sbjct: 300 H 300 >gi|83953609|ref|ZP_00962330.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1] gi|83841554|gb|EAP80723.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1] Length = 280 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/277 (42%), Positives = 175/277 (63%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + +K +GQNFLLDLN+ KIA +G + V+EIG GPG Sbjct: 1 MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR+V+ IEKD++ P L +I+ +P+RL +I+ DAL++D +++ PIR Sbjct: 61 LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P F P PKV+S V+H P P + L ++ AF +RRK LR Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPEPRFPADPDVLNRVVAAAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274 +LK E+ L AG++ RAE + +E FC + Sbjct: 239 ALKGTAPDIEDRLRAAGLKPTERAEQVPLEGFCALAR 275 >gi|126725345|ref|ZP_01741187.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150] gi|126704549|gb|EBA03640.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150] Length = 280 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 172/273 (63%), Gaps = 5/273 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L ++ + + +K +GQNFLLDLN+ KIA +G L G V+EIG GPG LT+ LL G Sbjct: 10 LSDVIETHGLAARKSLGQNFLLDLNLTSKIARQAGDLRGSDVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + L +I+S +PN+L+ I DAL+ + ++ +PI+++ANLPYN+ Sbjct: 70 ARRVLAIEKDTRCIAALDEIASAYPNQLKTINGDALEAN--PLEHLQAPIKVVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV RI A+ YGRL++L WR + ++ + Sbjct: 128 GTELLIRWLTPAEWPPFWDSLTLMFQREVAHRIVAKPGDKAYGRLALLAQWRAEPRIVME 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 + P F P+PKV+S V+H P P L ++TQ AFG+RRK LR SLK + + Sbjct: 188 LPPEAFTPAPKVSSAVVHLTALAEPRFPASGPHLSRVTQAAFGQRRKMLRASLKGIFKDP 247 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +L GI+ RAE + +E FC + +L N Sbjct: 248 TAVLESVGIDPTARAEVIGLEQFCALARVLKGN 280 >gi|56697309|ref|YP_167675.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3] gi|62900467|sp|Q5LQN0|RSMA_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56679046|gb|AAV95712.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3] Length = 279 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/271 (44%), Positives = 170/271 (62%), Gaps = 5/271 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL G Sbjct: 10 LREVIASHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L +I++ + RLE+I DAL++D +++ PIRI ANLPYN+ Sbjct: 70 ARRVLAIEKDARCLPALAEIAAAYSGRLEVINGDALEID--PLAHMTPPIRIAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI A+ S YGRL++L WR +A ++ Sbjct: 128 GTELLVRWLTPRDWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQWRAEARIVMS 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P L ++ AF +RRK LR +LK Sbjct: 188 LPPEAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRAALKGQAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E+ L AGI+ RAE + +E FC + L Sbjct: 248 EDRLLAAGIKPTERAEQVPLEAFCALARELA 278 >gi|163739709|ref|ZP_02147117.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107] gi|163743158|ref|ZP_02150540.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10] gi|161383575|gb|EDQ07962.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10] gi|161386939|gb|EDQ11300.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107] Length = 281 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/279 (43%), Positives = 172/279 (61%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ ++++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P L +IS +P RL++I+ DAL+V+ +++ PIR Sbjct: 61 LTRGLLAEGARRVLAVEKDSRCIPALAEISDAYPGRLQVIEGDALEVN--PLTHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAVPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV S V+H P P +L K+ AF +RRK LR Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLKALEAPRYPADAGTLNKVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SLK + E+ L+ GI RAE + +E FC + L Sbjct: 239 SLKSVSPDIEDHLNAVGIPPTERAEQVGLEAFCALARSL 277 >gi|260433483|ref|ZP_05787454.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis ITI-1157] gi|260417311|gb|EEX10570.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis ITI-1157] Length = 280 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/279 (44%), Positives = 176/279 (63%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MTAIDTLPPLREVIARHQLSARKSLGQNFLLDLNLTAKIARQAGDLTQCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GARKV+ +EKD + L++I++ +P RLEII DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARKVVAVEKDTRCIAALEEIAAAYPGRLEIINGDALEID--PLEHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A + + P F P PKV+S V+H P P +L ++ AF +RRK LR Sbjct: 179 RAQAQIAMSLPPGAFTPPPKVSSAVVHLTALPEPRFPAEAGTLSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L E+ L AGI+ RAE +S+E FC + L Sbjct: 239 ALKGLAPDIEDRLTAAGIKPTERAEQVSLEAFCALAREL 277 >gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] Length = 284 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/279 (43%), Positives = 177/279 (63%), Gaps = 3/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + + +K +GQNFLLDLN+ KIA ++G L G TVIEIG GPG Sbjct: 1 MSVIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTAKIARAAGQLQGATVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA+ VI IE+D++ L++IS ++P+RL I+ DA D + + + Sbjct: 61 LTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFDPQPLLGTTR-AK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+S + WPP+++++ L+FQ+EV ERI A++N YGRL+VL+ W Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDAMVLMFQREVAERIVARENDEAYGRLAVLSNW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++F ISP F P P+VTS+V+ IP +P PC L+++ AFG RRK LRQS Sbjct: 180 RAETKILFHISPAAFVPQPQVTSSVVRLIPRESPEPCDRRLLEQVAAAAFGHRRKMLRQS 239 Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK L +L AGI+ RAE + I F + L Sbjct: 240 LKSLPADPASLAAAAGIDPARRAETVPISGFVAMARELA 278 >gi|83942389|ref|ZP_00954850.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36] gi|83846482|gb|EAP84358.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36] Length = 280 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/277 (42%), Positives = 175/277 (63%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + +K +GQNFLLDLN+ KIA +G + V+EIG GPG Sbjct: 1 MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR+V+ IEKD++ P L +I+ +P+RL +I+ DAL++D +++ PIR Sbjct: 61 LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P F P PKV+S V+H P P + L ++ AF +RRK LR Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPQPRFPADPDVLNRVVAAAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274 +LK E+ L AG++ RAE + +E FC + Sbjct: 239 ALKGTAPDIEDRLLAAGLKPTERAEQVPLEGFCALAR 275 >gi|126728792|ref|ZP_01744607.1| dimethyladenosine transferase [Sagittula stellata E-37] gi|126710722|gb|EBA09773.1| dimethyladenosine transferase [Sagittula stellata E-37] Length = 279 Score = 244 bits (624), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 121/277 (43%), Positives = 171/277 (61%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ KK +GQNFLLDLN+ +IA G L + V+E+G GPG Sbjct: 1 MSQIDNLPPLREVIATHQLSAKKALGQNFLLDLNLTARIARIPGDLSQMDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR+V+ IEKD + P L +I+ +P RLE+I+ DAL++D ++ PI Sbjct: 61 LTRGLLSGGARRVLAIEKDARCLPALAEIADAYPGRLEVIEGDALQID--PLAHLEPPIA 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPP W SLTL+FQKEV ERI AQ YGRL++L+ W Sbjct: 119 ICANLPYNVGTELLTRWLTPPEWPPVWSSLTLMFQKEVAERIVAQPGGKAYGRLAILSQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT A + + P F P PKV+S V+H P P ++L++I AF +RRK LR Sbjct: 179 RTDARIALTLPPGAFTPPPKVSSAVVHLTALPAPRYPANPKTLERIVAMAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274 +LK E+ L GI RAE +S+E FC + Sbjct: 239 ALKGAAPDIEDRLRSVGIPPTERAEQVSLEAFCALAR 275 >gi|149914652|ref|ZP_01903182.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b] gi|149811445|gb|EDM71280.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b] Length = 279 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/270 (44%), Positives = 171/270 (63%), Gaps = 5/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQNFLLDLN+ KIA ++G L G V+EIG GPG LT+ LL G Sbjct: 10 LRDVIAQHGLSARKALGQNFLLDLNLTSKIARAAGDLTGSDVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ IEKD + P L +I+ +P RL ++ DAL+VD +++ PI+++ANLPYN+ Sbjct: 70 ARHVLAIEKDARCLPALDEIAQAYPGRLTVLNADALQVD--PLAHLTPPIKVVANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPP W+SLTL+FQ+EV ERI A S YGRL++L WR +A ++ Sbjct: 128 GTELLIRWLTPADWPPVWDSLTLMFQREVAERIVATPGSKAYGRLALLAQWRCEARIVMH 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P L+++ +AF +RRK LR +LK L Sbjct: 188 LPPSAFTPPPKVSSAVVHITALPEPRYPADPVLLERLVAKAFNQRRKMLRSALKGLAPDL 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L AGI+ RAE + +E FC + L Sbjct: 248 EDRLLAAGIQPTDRAETVGLEQFCALARSL 277 >gi|254488687|ref|ZP_05101892.1| dimethyladenosine transferase [Roseobacter sp. GAI101] gi|214045556|gb|EEB86194.1| dimethyladenosine transferase [Roseobacter sp. GAI101] Length = 280 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/277 (43%), Positives = 170/277 (61%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + +K +GQNFLLDLN+ +IA +G L V+EIG GPG Sbjct: 1 MSTIDSLPPLRDVINTHDLKARKSLGQNFLLDLNLTARIARHAGDLTACDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR V+ IEKD + P L +I+ +P RL +I+ DAL D + ++ PIR Sbjct: 61 LTRALLSEGARHVLAIEKDARCLPALAEIADAYPGRLTVIEGDAL--DIDPLAHLKPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFWESLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPPDWPPFWESLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P+PKV+S V+H P P L +I AF +RRK LR Sbjct: 179 RADARIVMHLPPEAFTPAPKVSSAVVHLTALPEPRFPADPAILSRIVATAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274 +LK + E+ L AG++ RAE + +E FC + Sbjct: 239 ALKGVAPDIEDRLIAAGLKPTDRAEQIPLEGFCALAR 275 >gi|89070361|ref|ZP_01157668.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516] gi|89044008|gb|EAR50183.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516] Length = 281 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/274 (44%), Positives = 166/274 (60%), Gaps = 5/274 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + KK +GQNFLLDLN+ KIA ++G L V+EIG GPG LT+ LL G Sbjct: 10 LREVIATHGLSAKKALGQNFLLDLNLTAKIARAAGDLTAADVLEIGPGPGGLTRGLLASG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ IEKD + P L +I++ +P RL +++ DAL D +++ P RI ANLPYN+ Sbjct: 70 ARHVVAIEKDPRCLPALAEIAAAYPGRLTVLEGDALATD--ATVHLTPPYRIAANLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ +WPP WESLTL+FQKEV +RI A+ S YGRL++L WR A ++ Sbjct: 128 GTELLVRWLTPPSWPPAWESLTLMFQKEVAQRIVARPGSKAYGRLALLAQWRADAQIVMS 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+ P P +L +IT AF +RRK LR SLK L Sbjct: 188 LPPGAFTPPPKVSSAVVRLDALPQPRYPADAATLSRITATAFNQRRKMLRASLKGLAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 E L GI RAE + +E FC + L + Sbjct: 248 ERHLEAVGIAPTDRAEQIDLERFCALARRLAPER 281 >gi|254452280|ref|ZP_05065717.1| dimethyladenosine transferase [Octadecabacter antarcticus 238] gi|198266686|gb|EDY90956.1| dimethyladenosine transferase [Octadecabacter antarcticus 238] Length = 279 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/271 (45%), Positives = 168/271 (61%), Gaps = 5/271 (1%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +LK ++ + + +K +GQNFLLDLN+ KIA SG + ++EIG GPG LT+ LL Sbjct: 8 TLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDILEIGPGPGGLTRGLLAE 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GAR ++ IEKD + P L DI + +P+RL ++ DAL D +++ PIR+ ANLPYN Sbjct: 68 GARHILAIEKDDRCLPALADIQAAYPDRLTVLCGDAL--DINPLDHLTPPIRVAANLPYN 125 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT LL W++ WPP+W+SLTL+FQ+EV +RITA S YGRL++L WRT A ++ Sbjct: 126 IGTELLVRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQWRTDAQIVM 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 ++ P F P PKV+S V+H P P L+ IT AF +RRK LR SLK L Sbjct: 186 NLPPEAFSPPPKVSSAVVHLTALAEPRFPADANMLQHITATAFNQRRKMLRSSLKGLSPD 245 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L A I+ RAE + +E FC + L Sbjct: 246 IEDHLIAANIKPTDRAEQIDVERFCALARSL 276 >gi|163746453|ref|ZP_02153811.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45] gi|161380338|gb|EDQ04749.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45] Length = 287 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 116/268 (43%), Positives = 169/268 (63%), Gaps = 5/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ +++ +K +GQNFLLDLN+ KIA +G + V+EIG GPG LT+ LL G Sbjct: 17 LREVINTHELAARKSLGQNFLLDLNLTAKIARQAGDMADCDVLEIGPGPGGLTRGLLAEG 76 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ IEKD++ P L +++ +P RL +I+ DAL++D +++ PIR+ ANLPYN+ Sbjct: 77 ARHVLAIEKDRRCLPALAEVAEHYPGRLTVIEGDALEID--PLSHLTPPIRVAANLPYNV 134 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI A S YGRL+VL WR+ A ++ Sbjct: 135 GTELLVRWLTPPQWPPFWQSLTLMFQREVAERIVATPGSKAYGRLAVLAQWRSDARIVMQ 194 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S+V+H P P L ++ AF +RRK LR +LK Sbjct: 195 LPPGAFTPPPKVSSSVVHLTALPEPRYPADPAVLSRVVAMAFNQRRKMLRSALKGAAPDI 254 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E+ L AG++ RAE + +E FC + Sbjct: 255 EDRLIAAGLKPTDRAEQVPLEGFCALAR 282 >gi|254437873|ref|ZP_05051367.1| dimethyladenosine transferase [Octadecabacter antarcticus 307] gi|198253319|gb|EDY77633.1| dimethyladenosine transferase [Octadecabacter antarcticus 307] Length = 279 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 123/271 (45%), Positives = 169/271 (62%), Gaps = 5/271 (1%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +LK ++ + + +K +GQNFLLDLN+ KIA SG + V+EIG GPG LT+ LL+ Sbjct: 8 TLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDVLEIGPGPGGLTRGLLSE 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GAR V+ IEKD + P L +I S +P+RL ++ DAL D +++ PIR+ ANLPYN Sbjct: 68 GARHVLAIEKDDRCLPALAEIQSAYPDRLTVLCGDAL--DINPLDHLTPPIRVAANLPYN 125 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 IGT LL W++ WPP+W+SLTL+FQ+EV +RITA S YGRL++L WRT A ++ Sbjct: 126 IGTELLIRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQWRTDAQIVM 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 ++ P F P PKV+S V+H P P L+ IT AF +RRK LR SLK L Sbjct: 186 NLPPEAFSPPPKVSSAVVHLTALAKPRFPADANMLQHITATAFNQRRKMLRSSLKGLSPD 245 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L A I+ RAE + ++ FC + L Sbjct: 246 IEDHLIAADIKPTDRAEQIDVQRFCALARSL 276 >gi|126736396|ref|ZP_01752138.1| dimethyladenosine transferase [Roseobacter sp. CCS2] gi|126714217|gb|EBA11086.1| dimethyladenosine transferase [Roseobacter sp. CCS2] Length = 278 Score = 241 bits (616), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 122/273 (44%), Positives = 168/273 (61%), Gaps = 11/273 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + KK +GQNFLLDLN+ KIA +G L G V+EIG GPG LT+ LL G Sbjct: 8 LREVIATHDLAAKKSLGQNFLLDLNLTAKIARLAGDLSGADVLEIGPGPGGLTRGLLAEG 67 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+V+ IEKD + P L DI++++P RL+ I DAL V+ ++S PI+I ANLPYN+ Sbjct: 68 ARRVLAIEKDPRCMPALADIAARYPGRLQTINGDALTVN--PLEHLSQPIKIAANLPYNV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+ LTL+FQ+EV +RI A S YGRL++L WRT ++ D Sbjct: 126 GTELLVRWLTPPEWPPFWDCLTLMFQREVAQRIVATPGSKAYGRLALLAQWRTDPKIVMD 185 Query: 190 ISPHVFFPSPKVTSTVIHFI----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + P F P PKV S V+H P P +L K+ AF +RRK LR +LK + Sbjct: 186 LPPEAFSPPPKVNSAVVHLTALPAPRFAADPG---TLNKVVAAAFNQRRKMLRSALKSVS 242 Query: 246 G--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L GI+ RAE + +E FC + L Sbjct: 243 PDIEDHLIATGIKPTERAEQVGLEAFCALARQL 275 >gi|149201838|ref|ZP_01878812.1| dimethyladenosine transferase [Roseovarius sp. TM1035] gi|149144886|gb|EDM32915.1| dimethyladenosine transferase [Roseovarius sp. TM1035] Length = 283 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 117/268 (43%), Positives = 165/268 (61%), Gaps = 5/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L +++ + + +K +GQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL G Sbjct: 10 LAKVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLGDCDVLEIGPGPGGLTRGLLMEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ IEKD + P L++I+ P RL ++ DAL D + +++ PIR+++NLPYN+ Sbjct: 70 ARHVLAIEKDSRCLPALQEIADAAPGRLTVLNADAL--DLDPLAHLTPPIRVVSNLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ YGRL++L WR +M Sbjct: 128 GTELLIRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGGKAYGRLALLAQWRAVPRIMMH 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P + L+++ AF +RRK LR +LK Sbjct: 188 LPPGAFTPPPKVSSAVVHLTALPEPRYPADPKILERVVARAFNQRRKMLRAALKGAAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E+ L AGI+ RAE +S+E FC + Sbjct: 248 EDRLLSAGIKPTDRAETVSLEQFCALAR 275 >gi|218458347|ref|ZP_03498438.1| dimethyladenosine transferase [Rhizobium etli Kim 5] Length = 202 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/194 (55%), Positives = 142/194 (73%), Gaps = 1/194 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI IE+D + P L +I+ +P RLE+I+ DALK DFE P++IIANLPYN+ Sbjct: 70 AKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAP-EGPVKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL+GWRT+A M FD Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLSGWRTEARMAFD 188 Query: 190 ISPHVFFPSPKVTS 203 + P P PKVTS Sbjct: 189 VPPRALTPPPKVTS 202 >gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 278 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/266 (44%), Positives = 170/266 (63%), Gaps = 8/266 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFLLD +L +IA G L TV E+G GPG LT+ LL G Sbjct: 9 LRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKAG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KV +E+D++ P L ++S+ P++L++I DA+++D + + I+ANLPYN+ Sbjct: 69 A-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAV--LGEHVHIVANLPYNV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++A TW P+W SLTL+FQKEV ERITA+ +PHYGRLSVL WR++A + F Sbjct: 126 GTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSFP 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + F P PKV S V+H P P L +L+KIT AF +RRK LRQSLK + E++ Sbjct: 186 VHRSAFVPPPKVMSAVVHLTPKDQPEGVSLGTLEKITAAAFNQRRKMLRQSLKNI--EHM 243 Query: 250 LHQ---AGIETNLRAENLSIEDFCRI 272 + AGI+ R E +S+ +F I Sbjct: 244 MEALELAGIDATRRPETVSVAEFIAI 269 >gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] Length = 281 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/270 (45%), Positives = 171/270 (63%), Gaps = 9/270 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQ+FL DLN+ +IA ++G L +VIEIG GPG LT+ LL G Sbjct: 7 LREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLTVGSVIEIGPGPGGLTRALLDAG 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR+VI IE+D + I +I+ +P RLEI+ DA+ VD + + P RI+ANLPYNI Sbjct: 67 ARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADAMTVDAAELGEV--PRRIVANLPYNI 124 Query: 130 GTRLLFNWI-SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 T LL W+ AD +E L L+FQKEV +R+ A S HYGRLSV+T WR + +F Sbjct: 125 STALLLGWLRRADA----FERLVLMFQKEVVDRLAAPPRSEHYGRLSVITQWRCEVRPLF 180 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 ++ F P P VTSTV+ IP P+ P E+L+++T AFG+RRK LR SLK LGG Sbjct: 181 NVDRRAFTPPPAVTSTVVDLIPRAEPLAPARFETLERVTAAAFGQRRKMLRSSLKSLGGA 240 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+LL + GI RAE + +E FC + L Sbjct: 241 EDLLERTGILPTARAEEIPVEGFCALARAL 270 >gi|163797528|ref|ZP_02191479.1| 16S rRNA dimethylase [alpha proteobacterium BAL199] gi|159177277|gb|EDP61836.1| 16S rRNA dimethylase [alpha proteobacterium BAL199] Length = 283 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 121/272 (44%), Positives = 169/272 (62%), Gaps = 6/272 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ KK +GQNFLLD+N+ ++IA ++G+L+ T IEIG GPG LT+ LL G Sbjct: 15 LREAIATANFSAKKSLGQNFLLDINLTRRIARAAGALETGTTIEIGPGPGGLTRALLIEG 74 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +I IE+D + L + RL +++DDA +VD ++P R++ANLPYN+ Sbjct: 75 AVDLIAIERDSRAAEALAPLVQAAEGRLRLVEDDATEVDVSSLG--AAPRRVVANLPYNV 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 TRLL W++ P +ESLTL+FQKEV +R+ A S YGRLSV W + D Sbjct: 133 ATRLLLGWLAT---PTSFESLTLMFQKEVADRLLAAPGSDAYGRLSVFVQWLCTVRRVTD 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + P F P PKV S+V+ P P+ P +L+++T+ AFG+RRK LRQSLK LGG+ Sbjct: 190 LPPSAFTPPPKVWSSVVRLEPRAEPLHPADRRTLERVTEAAFGQRRKMLRQSLKGLGGDA 249 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LL AGIE R E LSI +FCR+ N L+D + Sbjct: 250 LLIAAGIEPTERPERLSIAEFCRLANALSDRE 281 >gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ZM4] gi|241761717|ref|ZP_04759804.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|62900473|sp|Q5NMX2|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ZM4] gi|241374025|gb|EER63558.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 278 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 119/266 (44%), Positives = 170/266 (63%), Gaps = 8/266 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFLLD +L +IA G L TV E+G GPG LT+ LL G Sbjct: 9 LRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKAG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KV +E+D++ P L ++S+ P++L++I DA+++D + + I+ANLPYN+ Sbjct: 69 A-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAV--LGEHVHIVANLPYNV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++A TW P+W SLTL+FQKEV ERITA+ +PHYGRLSVL WR++A + F Sbjct: 126 GTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSFP 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + F P PKV S V+H P P L +L+KIT AF +RRK LRQSLK + E++ Sbjct: 186 VHRSAFVPPPKVMSAVVHLTPKDQPEGLSLGTLEKITAAAFNQRRKMLRQSLKNI--EHM 243 Query: 250 LHQ---AGIETNLRAENLSIEDFCRI 272 + AGI+ R E +S+ +F I Sbjct: 244 MEALELAGIDATRRPETVSVAEFIAI 269 >gi|85706337|ref|ZP_01037431.1| dimethyladenosine transferase [Roseovarius sp. 217] gi|85669110|gb|EAQ23977.1| dimethyladenosine transferase [Roseovarius sp. 217] Length = 283 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/275 (42%), Positives = 167/275 (60%), Gaps = 5/275 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L +++ + + +K +GQNFLLDLN+ KIA +G L V+EIG GPG LT+ LL G Sbjct: 10 LARVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLTTCDVLEIGPGPGGLTRGLLMEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ IEKD + P L +I+ P RL ++ DAL D + +++ PIR+++NLPYN+ Sbjct: 70 ARHVLAIEKDARCLPALHEIAEAAPGRLTVLNADAL--DLDPLAHLTPPIRVVSNLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ WPPFW+SLTL+FQ+EV ERI A S YGRL++L WR ++ Sbjct: 128 GTELLIRWLTPPDWPPFWQSLTLMFQREVAERIVATPGSKAYGRLALLAQWRATPRIVMH 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + P F P PKV+S V+H P P + L+++ AF +RRK LR +LK Sbjct: 188 LPPGAFTPPPKVSSAVVHLTALSEPRYPADPKILERVVARAFNQRRKMLRAALKGAAPDI 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 E+ L AGI+ RAE +S+E FC + ++ + Sbjct: 248 EDRLLAAGIQPTDRAETVSLEQFCALARVMPGGAE 282 >gi|296116660|ref|ZP_06835270.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC 23769] gi|295976872|gb|EFG83640.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC 23769] Length = 285 Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 115/273 (42%), Positives = 169/273 (61%), Gaps = 6/273 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++ SL+ +++ + + +K +GQ+FLLD I +IA +G LD + V+E+G GPG LT Sbjct: 8 LSTPHESLRDVIARHGLDARKSLGQHFLLDPGITARIASMAGRLDDVNVVEVGPGPGGLT 67 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A V V+E D + I+ ++++ HP RL +++DDA++ D +P +I+ Sbjct: 68 RALLDTPATSVSVVEVDARAIVIMNELAASHPGRLHVVEDDAMRRDLATL--CPAPRQIV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+GT LL W+ T W LTL+FQ EV ERI A +S HYGRL+VL+ W Sbjct: 126 ANLPYNVGTPLLVGWLRQATE---WARLTLMFQLEVAERICAPPDSDHYGRLAVLSQWVA 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + ++ I P F P PKV S V++ IPH P P +++++T AFG+RRK LR +L Sbjct: 183 RCGIVMTIPPGAFSPPPKVQSAVVNLIPHTKQPAPALFRAMEQVTAAAFGQRRKMLRGAL 242 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + +GGE LL AGI N RAE L I DF R+ + Sbjct: 243 RGIGGEALLEAAGIAGNRRAETLDIADFDRLAH 275 >gi|294084204|ref|YP_003550962.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663777|gb|ADE38878.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum IMCC1322] Length = 295 Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 127/270 (47%), Positives = 173/270 (64%), Gaps = 11/270 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SL+ ++ + +K +GQNFL DLN+ ++IA S+ L G T IEIG GPG LT+ LL Sbjct: 27 SLRDLVGAMDMRARKSLGQNFLFDLNLTRRIARSAAPLTG-TTIEIGPGPGGLTRALLLE 85 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GA KV+ IEKD + +L + S RLE+ + DA+ DF + +P RIIANLPYN Sbjct: 86 GATKVLAIEKDWRAPDVLASLLSASRGRLELTEADAM--DFPIWDIEPAPRRIIANLPYN 143 Query: 129 IGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 I T LL W+ +AD +ES+TL+FQ+EV RITA+ YGRLSVL GW A + Sbjct: 144 IATTLLIRWLEHAAD-----FESMTLMFQREVALRITAKPGDSAYGRLSVLAGWLADAEI 198 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 +FDI P F P+PK+TS+V+ IP P PC + L+ +T+ AFG+RRK LR SLK++G Sbjct: 199 LFDIPPEAFVPAPKITSSVVQIIPLAAPRFPCRQQYLEDVTRHAFGQRRKMLRSSLKKIG 258 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNI 275 GE LL AGI+ R ++L IE FC++ + Sbjct: 259 GEALLLAAGIDPETRPQDLDIESFCKLAEL 288 >gi|288958701|ref|YP_003449042.1| dimethyladenosine transferase [Azospirillum sp. B510] gi|288911009|dbj|BAI72498.1| dimethyladenosine transferase [Azospirillum sp. B510] Length = 291 Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 120/266 (45%), Positives = 167/266 (62%), Gaps = 8/266 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQNFLLDLN+ +IA S+ G T IE+G GPG LT+ LL Sbjct: 11 LRDVIARFGLEARKALGQNFLLDLNLTGRIARSANLPAGTTAIEVGPGPGGLTRALLATN 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KVI IE+D++F L+D+ RL I++ DAL VD E+ +P I+ANLPYN+ Sbjct: 71 AVKVIAIERDRRFIEALQDVIEAAQGRLSIVEADALTVDPEEL--APAPRAIVANLPYNV 128 Query: 130 GTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 T LL W++ D + SLTL+FQKEV +R+ A+ S YGRLSV+T WR+ A ++F Sbjct: 129 ATPLLLGWLARIDAY----VSLTLMFQKEVADRLVAKPGSKAYGRLSVITQWRSDARVLF 184 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GE 247 ++ P F P PKV STV+H P NP P +L+++T AFG+RRK LRQSLK LG E Sbjct: 185 NLPPRAFTPPPKVESTVVHLTPRANPEPADWRALEQVTAAAFGQRRKMLRQSLKSLGNAE 244 Query: 248 NLLHQAGIETNLRAENLSIEDFCRIT 273 LL + GI RAE + + F + Sbjct: 245 ALLEETGIAPTARAEEIDVAGFAALA 270 >gi|149186122|ref|ZP_01864436.1| dimethyladenosine transferase [Erythrobacter sp. SD-21] gi|148830153|gb|EDL48590.1| dimethyladenosine transferase [Erythrobacter sp. SD-21] Length = 273 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 114/269 (42%), Positives = 165/269 (61%), Gaps = 3/269 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFL D +L +IA G+L G V+EIG GPG LT+ LL G Sbjct: 7 LREVIARHGLSASKALGQNFLFDQQLLDRIAALPGALAGRRVLEIGPGPGGLTRALLKAG 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V IE D++ P L ++ +P +LE+I+ DALK+D + P I++NLPYN+ Sbjct: 67 A-EVTAIEMDERCLPALAELGEAYPGKLEVIRGDALKLDHDAIMG-GEPYAILSNLPYNV 124 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT L W+ + WPP W SLTL+FQ+EV +RI A+ + YGRLSVL WR +A + Sbjct: 125 GTALFTRWMGGEAWPPLWTSLTLMFQQEVAQRIVAKSGTSAYGRLSVLAQWRAQAKLAMK 184 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248 + F P PKV S ++H P P + L+++T+ +FG+RRK LRQSLK + G + Sbjct: 185 VHRSAFTPPPKVMSAIVHVEPGAMPEGVSAKVLERLTETSFGQRRKMLRQSLKGVAGAVD 244 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI++ RAE LSIE+F + LT Sbjct: 245 TLETLGIDSQRRAETLSIEEFVALARALT 273 >gi|312113661|ref|YP_004011257.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100] gi|311218790|gb|ADP70158.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100] Length = 287 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 112/270 (41%), Positives = 167/270 (61%), Gaps = 3/270 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ I+ + +K +GQNF+LDLN+ ++IA ++G L+G TV+EIG GPG LT+ LL G Sbjct: 12 LREIIKDASLSARKSLGQNFILDLNVTRRIARAAGPLNGATVLEIGPGPGGLTRALLIEG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A I IE+D++F P L I+ +R + DA+ +D+ F + R++ANLPYNI Sbjct: 72 ASGAIAIERDERFRPALDQIAEASGDRFRVTFADAMGIDYPAFAAETGANRLVANLPYNI 131 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+ W++ WPP+++ + ++ QKEV ER+ A S HYGRL+V+ +R +A ++F Sbjct: 132 ATPLIVGWLTEARWPPWFDRIVVMVQKEVAERLVADVGSDHYGRLAVIAQFRARARILFT 191 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + P VF P PKV S ++ +P P L+++T AFG+RRK LR SL LG + Sbjct: 192 LPPSVFTPPPKVASALVEIVPRPQAPDAVPTSWLERVTAAAFGQRRKMLRSSLASLGADT 251 Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL AGI+ RAE L++EDF R+ L Sbjct: 252 ARLLADAGIDPAERAERLTVEDFIRLAQAL 281 >gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 276 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 122/273 (44%), Positives = 167/273 (61%), Gaps = 7/273 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQ+FL DLN+ +IA ++G L TVIEIG GPG LT+ LL G Sbjct: 7 LRDVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLSVGTVIEIGPGPGGLTRALLDAG 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI IE+D + I +I+ +P RLEII DA+ +D + P RI+ANLPYNI Sbjct: 67 ARHVIAIERDDRAIAIQNEIAEAYPGRLEIIAADAMTIDAAGLGEM--PRRIVANLPYNI 124 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ +E L L+FQKEV +R+ A S HYGRLSV+T W + +F+ Sbjct: 125 STALLLGWLRRAQA---FERLILMFQKEVVDRLAAAPRSDHYGRLSVITQWLCEVRPLFN 181 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247 + F P P VTSTV+ IP P+ P E+L+++T AFG+RRK LR SLK LGG E Sbjct: 182 VDRRAFTPPPAVTSTVVDLIPRSQPLAPARFETLERVTAAAFGQRRKMLRSSLKPLGGAE 241 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LL + GI RAE + +E FC + L + Q Sbjct: 242 ELLERTGILPTARAEEIPVEGFCALARALDERQ 274 >gi|85710400|ref|ZP_01041464.1| dimethyladenosine transferase [Erythrobacter sp. NAP1] gi|85687578|gb|EAQ27583.1| dimethyladenosine transferase [Erythrobacter sp. NAP1] Length = 275 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/268 (41%), Positives = 160/268 (59%), Gaps = 3/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ ++ + + K +GQNFLLD +L +IA G L G V+E+G GPG LT+ LL G Sbjct: 7 IRETIAKHGLSASKALGQNFLLDEQLLDRIAALPGDLSGARVLEVGPGPGGLTRALLRAG 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V IE D++ P L+++S P +L +I+ DA+K+D + P +++NLPYN+ Sbjct: 67 AR-VTAIEMDRRCLPALEELSEAFPGQLTVIEGDAMKLDHGAIMD-GEPFHVLSNLPYNV 124 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT L W+S WPP W SLTL+FQ+EV ERI AQ YGRL+VL WR KA + Sbjct: 125 GTALFVKWLSGQDWPPQWLSLTLMFQREVAERIVAQPGGSAYGRLAVLAQWRAKAKLAMK 184 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248 + F P PKV S ++H P P +L+++T+ AFG+RRK LRQSLK + G + Sbjct: 185 VHRSAFTPPPKVMSAIVHVTPAEAPADVSSRTLERLTEAAFGQRRKMLRQSLKSVPGALD 244 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 L GIE RAE +S+ +F + + Sbjct: 245 ALQSVGIEETRRAETVSVAEFVALAKAV 272 >gi|87198908|ref|YP_496165.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM 12444] gi|119365043|sp|Q2G9Z2|RSMA_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|87134589|gb|ABD25331.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM 12444] Length = 273 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/269 (43%), Positives = 160/269 (59%), Gaps = 4/269 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFL D +L +IA G L G V+E+G GPG LT+ LL G Sbjct: 7 LRDVVNRHGLYATKALGQNFLFDEQLLDRIARVPGKLKGENVLEVGPGPGGLTRALLRAG 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KV IE D++ P L +++ P +L +I+ DA K+ E F+ P + ANLPYN+ Sbjct: 67 A-KVTAIEMDKRCLPALAELADAFPGQLTVIEGDATKIAPETLFD--GPWHVAANLPYNV 123 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+L W+S WPP W+SLTL+FQ EV ERI AQ + YGRL+VL WR + Sbjct: 124 GTQLFTGWLSGQDWPPQWKSLTLMFQLEVAERIVAQPGTDAYGRLAVLAQWRATPRIATR 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248 + F P PKV S +IH P P L+++T+ AFG+RRK LRQSLK L G + Sbjct: 184 VHRSAFTPPPKVMSAIIHVEPAAMPEGVSARMLERVTEAAFGQRRKMLRQSLKGLPGALD 243 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI+ RAE LS+EDF I +LT Sbjct: 244 ALETLGIDPQRRAETLSVEDFVAIARLLT 272 >gi|58038777|ref|YP_190741.1| dimethyladenosine transferase [Gluconobacter oxydans 621H] gi|62900455|sp|Q5FU61|RSMA_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58001191|gb|AAW60085.1| Putative dimethyladenosine transferase (16S rRNA dimethylase) [Gluconobacter oxydans 621H] Length = 303 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/268 (43%), Positives = 165/268 (61%), Gaps = 6/268 (2%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SL+ + + + KK +GQ+FLLD I +IA G L G +V+EIG GPG LT+ LL Sbjct: 36 SLRDTIQAHGLDAKKSLGQHFLLDPGICARIAALGGDLTGRSVVEIGPGPGGLTRALLDT 95 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A +V V+E D++ +P+L ++++ +P+RL +++ DALK+D +P +IIANLPYN Sbjct: 96 PASRVDVVEIDERAWPLLDELATYYPDRLHVVRQDALKLDAATL--APAPRQIIANLPYN 153 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T LL W+ + WE L+L+FQ EV ERI A S YGRL+VL+ W ++ Sbjct: 154 VATPLLVGWLRQASQ---WERLSLMFQLEVAERICAAPGSSAYGRLAVLSQWCASCSVAL 210 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 I P F P PKV S V IPH P P +++++T AFG+RRK LR SLK +GGE Sbjct: 211 RIPPAAFSPPPKVHSAVAVIIPHAEQPSPQLFRAMEQVTAAAFGQRRKMLRSSLKSIGGE 270 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNI 275 LL QA IE RAE LS+ +F R+ + Sbjct: 271 RLLEQAEIEPTRRAETLSVAEFARLAEL 298 >gi|85374607|ref|YP_458669.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594] gi|122544064|sp|Q2N8W9|RSMA_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|84787690|gb|ABC63872.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594] Length = 281 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/272 (40%), Positives = 164/272 (60%), Gaps = 4/272 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFL D +L +IA G L+ V+EIG GPG LT+ LL G Sbjct: 7 LRDVIAKHGLSASKALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTRALLKAG 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V IE D++ P L ++S +P +L +I DA+K+D + + P ++ANLPYN+ Sbjct: 67 AR-VTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAEL--MGEPFAVVANLPYNV 123 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT L W+ +TWPP W SLTL+FQ+EV +RI + + YGRL+VL WR+ A+M Sbjct: 124 GTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVSTPGTSAYGRLAVLAQWRSAASMPMK 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGEN 248 + F P PKV S ++H P P +L+++T+ AFG+RRK LRQSLK + G Sbjct: 184 VHRSAFTPPPKVMSAIVHVTPDEMPEGVSARTLERLTEAAFGQRRKMLRQSLKGVPGAVE 243 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L + IE RAE +++E+F + L ++ Sbjct: 244 TLAEVAIEETRRAETVTVEEFVALARRLGASR 275 >gi|114328859|ref|YP_746016.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1] gi|114317033|gb|ABI63093.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1] Length = 286 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/266 (41%), Positives = 163/266 (61%), Gaps = 6/266 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQ+FLLD +++ +I +G + G T IEIG GPG LT+ LL Sbjct: 19 LRDVIARHGLEARKALGQHFLLDPHLMARIVREAGPMQGRTAIEIGPGPGGLTRALLETA 78 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V+ IE D + P L++++ +P+RL +++ DA++ D + P RI+ANLPYN+ Sbjct: 79 AERVVAIELDHRAIPALEELAGFYPDRLTVLEADAMRADLGTL--TTGPRRIVANLPYNV 136 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+ +ES+TL+FQ+EV ERI A S YGRL VL W + M+ Sbjct: 137 GTPLLVGWLRQAA---LFESMTLMFQQEVAERICAAPGSDAYGRLGVLAQWTCRVEMLMS 193 Query: 190 ISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + P F P PKV S V P P P +++++T AFG+RRK LR +LK LGGE Sbjct: 194 VPPGAFHPPPKVYSAVAALWPREEQPSPALFTAMERVTAAAFGQRRKMLRGALKSLGGEG 253 Query: 249 LLHQAGIETNLRAENLSIEDFCRITN 274 LL +AGI + RAE L+IE+F R+ Sbjct: 254 LLSRAGIAGDRRAETLTIEEFDRLAR 279 >gi|148553332|ref|YP_001260914.1| dimethyladenosine transferase [Sphingomonas wittichii RW1] gi|148498522|gb|ABQ66776.1| dimethyladenosine transferase [Sphingomonas wittichii RW1] Length = 276 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 108/269 (40%), Positives = 160/269 (59%), Gaps = 4/269 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFLLD +L +IA G LDG TV E+G GPG LT+ LL G Sbjct: 11 LREVIARHGLSANKALGQNFLLDGQLLDRIARVPGDLDGATVYEVGPGPGGLTRALLGAG 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V+ +E+D + L++++ RL +I DA+K+D + I +NLPYN+ Sbjct: 71 A-SVVAVERDDRCLAALEELNQASGGRLRVISADAMKID--ERAEAGDGAHIASNLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT L W++ D WPP+W SLTL+FQKEV ERI A+ S YGRL+VL WR + + Sbjct: 128 GTALFVRWMTLDAWPPWWRSLTLMFQKEVAERIVAKPGSAAYGRLAVLAQWRATPVIAMN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGEN 248 + F P PKV S ++H +P P + +++ +T AFG+RRK LRQSLK + G Sbjct: 188 VHRSAFVPPPKVMSAIVHVVPAAQPEGASMATIETLTAAAFGQRRKMLRQSLKGVKGAVE 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI+ RAE +++++F + L+ Sbjct: 248 ALATVGIDPERRAETVTVDEFVALARALS 276 >gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 123/273 (45%), Positives = 167/273 (61%), Gaps = 7/273 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +L+ + + +K +GQ+FLLDLN+ +IA ++G+L T IEIG GPG LT+ LL Sbjct: 8 LRDVLNAHGLTARKSLGQHFLLDLNLTGRIARAAGNLATGTTIEIGPGPGGLTRALLDND 67 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI IE+D + I +I + +P RLEII DAL+V+ +P RI+ANLPYNI Sbjct: 68 ARHVIAIERDDRAIAIQNEIMAAYPGRLEIIAADALEVEAATLGE--APRRIVANLPYNI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ +ESLTL+FQKEV +R+ A SP YGRLSV+T W +F+ Sbjct: 126 STVLLLAWLRRIDA---FESLTLMFQKEVVDRLAAAPRSPDYGRLSVITQWLCDVRPLFN 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247 + F P P V STV+ IP P+ P +E+L+K+T AFG+RRK LR SLK LG E Sbjct: 183 VDKRAFTPPPNVMSTVVQLIPRSQPLAPARMETLEKVTAAAFGQRRKMLRSSLKSLGPVE 242 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 ++L GI RAE L++ FC + L Q Sbjct: 243 DMLAATGIAGTARAEELTVSQFCTLAEYLDRQQ 275 >gi|167646487|ref|YP_001684150.1| dimethyladenosine transferase [Caulobacter sp. K31] gi|167348917|gb|ABZ71652.1| dimethyladenosine transferase [Caulobacter sp. K31] Length = 288 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 166/263 (63%), Gaps = 11/263 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +L+ + ++ K GQ+FLLDLNI +KIA +G +G TVIE+G GPG LT+ LL G Sbjct: 24 LREVLAEHDLLANKSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGLTRTLLETG 83 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ +E D++F P+L+D+S RL I+Q DALKVD P +++NLPYN+ Sbjct: 84 AR-VVAVEMDKRFLPLLEDLSVAADGRLTIVQGDALKVDMAAVAG--GPAHMVSNLPYNV 140 Query: 130 GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 GT LL NW++ PF S+TL+FQKEV +RI A + YGRL+V++ A ++ Sbjct: 141 GTPLLINWLTG----PFRPLSMTLMFQKEVADRIAADVDDDAYGRLAVVSQTVCTAKVVM 196 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 D+ F P PKV S V+ +P L P P + +L+K+T AFG+RRK LR SLK LGG Sbjct: 197 DLPARAFTPPPKVASAVVRLVP-LTPAPDKAMVAALEKVTAAAFGQRRKMLRSSLKGLGG 255 Query: 247 ENLLHQAGIETNLRAENLSIEDF 269 L +AGI + RAE + +E F Sbjct: 256 AALCEKAGINPDARAETIPVEGF 278 >gi|296282381|ref|ZP_06860379.1| dimethyladenosine transferase [Citromicrobium bathyomarinum JL354] Length = 274 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/269 (41%), Positives = 157/269 (58%), Gaps = 3/269 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFL D +L +IA G L G V+E+G GPG LT+ LL G Sbjct: 7 LREVIAAHGLSASKALGQNFLFDEQLLARIAAVPGDLSGRNVLEVGPGPGGLTRALLRAG 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KV IE D++ P L ++ P +L +I+ DALK+D + F+ P I++NLPYN+ Sbjct: 67 A-KVTAIEMDRRCLPALAELGDAFPGQLTVIEGDALKIDHDAIFD-GEPYAILSNLPYNV 124 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT L W+ + WPP W SLTL+FQ+EV +RI AQ YGRL+VL WR A + Sbjct: 125 GTALFTRWMGGEAWPPNWTSLTLMFQQEVAQRIVAQPGGSAYGRLAVLAQWRGTAKLAMK 184 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248 + F P PKV S ++H P P L+++T AFG+RRK LRQSLK + G + Sbjct: 185 VHRSAFTPPPKVMSAIVHVTPAAMPDGVSAAKLEQVTAAAFGQRRKMLRQSLKGVPGALD 244 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI+ RAE L + +F + L+ Sbjct: 245 ALETLGIDPQRRAETLDVGEFVVLARALS 273 >gi|83591771|ref|YP_425523.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170] gi|119365056|sp|Q2RXA9|RSMA_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83574685|gb|ABC21236.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170] Length = 288 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/270 (42%), Positives = 167/270 (61%), Gaps = 7/270 (2%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T + L+ +++ + + ++ +GQNFL DLN+ +IA + G +D TVIEIG GPG L Sbjct: 11 TPGDGLPPLREVIATHGLDARRSLGQNFLFDLNLTGRIARAGGEIDQGTVIEIGPGPGGL 70 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 T+ LL GAR+VI IE+D + +L +I++ P RLE I+ DAL +D +P R+ Sbjct: 71 TRALLGAGARRVIAIERDSRCRGVLAEIAAVWPGRLETIEGDALDIDVAALGE--APRRV 128 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPYN+ T LL W+ + +E L+FQKEV +R+ A+ + YGRLSV+T W Sbjct: 129 IANLPYNVATPLLIGWLRHAS---AFERFVLMFQKEVVDRLAARPGTKDYGRLSVITQWL 185 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQS 240 + +FD++P F P PKV STV+ P P+ P +E+L+++T AFG+RRK LR S Sbjct: 186 CEVRPLFDVNPRAFTPPPKVVSTVVRIDPRPQPLAPARMETLERVTAAAFGQRRKMLRAS 245 Query: 241 LKRLG-GENLLHQAGIETNLRAENLSIEDF 269 LK LG E L AG++ RAE + +E F Sbjct: 246 LKALGDAEGLCAAAGLDPTARAETIPVEGF 275 >gi|329890126|ref|ZP_08268469.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568] gi|328845427|gb|EGF94991.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568] Length = 268 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 166/270 (61%), Gaps = 7/270 (2%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SL+ L + + KK GQ+FLLDLN+ +KI +G DG VIE+G GPG LT+ LL Sbjct: 5 SLRETLDAHGLSAKKSFGQHFLLDLNVTRKIVRYAGPFDGRAVIEVGPGPGGLTRALLES 64 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A KV+++EKD +F P+L ++ RL I++ DALKV + + P +++NLPYN Sbjct: 65 DAGKVVLVEKDPRFIPLLSELDDGS-GRLTIVEADALKVKEAEL--VEGPAHLVSNLPYN 121 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +GT LL W++ W P +LTL+FQKEV ER+ AQ YGRL+V++ +A ++ Sbjct: 122 VGTPLLIKWLTG-PWTPC--ALTLMFQKEVAERVVAQPGEDAYGRLAVISQAVAEARIVM 178 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + F P PKV S V+H IP P P L+ L+++T AFG+RRK LR SLK+LGG Sbjct: 179 HLPAAAFTPPPKVASAVVHLIPLAERPAPDRLKRLERVTAAAFGQRRKMLRSSLKQLGGA 238 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L AGIE + RAE + + F R+ + LT Sbjct: 239 ALCEAAGIEPDARAETIDVAGFLRLADALT 268 >gi|221234694|ref|YP_002517130.1| dimethyladenosine transferase [Caulobacter crescentus NA1000] gi|220963866|gb|ACL95222.1| dimethyladenosine transferase [Caulobacter crescentus NA1000] Length = 281 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 113/274 (41%), Positives = 166/274 (60%), Gaps = 9/274 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ L + ++ +K GQ+FLLDLN+ +KIA + +G TV+E+G GPG LT+ LL G Sbjct: 14 LREALERHDLMARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ IEKD +F P+L +++ RLE+++ DALKVD + P +++NLPYN+ Sbjct: 74 AR-VVAIEKDSRFLPLLAEVAEVAEGRLELVEGDALKVDAAQ--AAGGPAHVVSNLPYNV 130 Query: 130 GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 GT+LL NW++ PF S+TL+FQKEV +RI AQ YGRL+V+ +A + Sbjct: 131 GTQLLINWLTG----PFRPLSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQTLCEARTVM 186 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 D+ F P PKV S V+ +P P P + +L+++T AFG+RRK LR SLK LGG Sbjct: 187 DLPAKAFTPPPKVASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRSSLKALGGA 246 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +L +AG+ + RAE + + F + D Sbjct: 247 DLCERAGVSPDARAEVIDLAGFLDLARATLGGAD 280 >gi|326386744|ref|ZP_08208365.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM 19370] gi|326208797|gb|EGD59593.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM 19370] Length = 281 Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 113/268 (42%), Positives = 156/268 (58%), Gaps = 4/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQNFL D +L +IA G L G V+E+G GPG LT+ LL G Sbjct: 9 LRDVVARHGLSAQKSLGQNFLFDEQLLDRIAAVPGKLAGADVLEVGPGPGGLTRALLRAG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V IE D++ P L ++ P +L +I+ DA+K+ E F I ANLPYN+ Sbjct: 69 AR-VTAIEMDRRCLPALAELGEAFPGQLRVIEGDAMKIAPETLFE--GEWHIAANLPYNV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT L W+S WPP W SLTL+FQ EV ERI A+ S YGRL++L+ WR + Sbjct: 126 GTGLFTGWLSGQAWPPRWRSLTLMFQLEVAERIVAKTGSDAYGRLAILSQWRATPRIAMK 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248 + F P PKV S ++H P P +L+++T+ AFG+RRK LRQSLK L G + Sbjct: 186 VHRSAFTPPPKVMSAIVHVEPAEMPDGVSARTLERVTEAAFGQRRKMLRQSLKGLPGALD 245 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 L GI+ RAE L + DF I I+ Sbjct: 246 ALETLGIDPQRRAETLDVADFVAIARIM 273 >gi|295689681|ref|YP_003593374.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756] gi|295431584|gb|ADG10756.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756] Length = 272 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 166/267 (62%), Gaps = 9/267 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ L + ++ +K GQ+FLLDLN+ +KIA + +G TV+E+G GPG LT+ LL G Sbjct: 9 LREALERHDLMARKSFGQHFLLDLNVTRKIARLAQIGEGDTVVEVGPGPGGLTRALLETG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V+ IEKD +F P+L +++ RLE+++ DALKVD + P +++NLPYN+ Sbjct: 69 AR-VVAIEKDSRFLPLLSEVAEVADGRLELVEGDALKVDAAQ--AAGGPAHVVSNLPYNV 125 Query: 130 GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 GT+LL NW++ PF S+TL+FQKEV +RI AQ + YGRL+V+ +A + Sbjct: 126 GTQLLINWLTG----PFRPLSMTLMFQKEVADRIVAQPDDDAYGRLAVIAQTLCEAKTVM 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 D+ F P PKV S V+ +P +P P + +L+++T AFG+RRK LR SLK LGG Sbjct: 182 DLPAKAFTPPPKVASAVVRLVPRQDPPPAEIVAALERVTAAAFGQRRKMLRSSLKALGGG 241 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 L +AGI + RAE + + F + Sbjct: 242 ELCEKAGISPDARAEVIDLAGFLALAK 268 >gi|294012542|ref|YP_003546002.1| dimethyladenosine transferase [Sphingobium japonicum UT26S] gi|292675872|dbj|BAI97390.1| dimethyladenosine transferase [Sphingobium japonicum UT26S] Length = 280 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/269 (41%), Positives = 163/269 (60%), Gaps = 5/269 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFLLD +L +IA G L+G E+G GPG LT+ +L G Sbjct: 12 LREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGPGPGGLTRAILRAG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A K++ +E+D++ P L ++ + P +L ++ DA++VD IIANLPYN+ Sbjct: 72 A-KLVAVERDRRCLPALAELDAAFPGQLRVLSGDAMEVDARA--EAGEGAHIIANLPYNV 128 Query: 130 GTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 GT LL W+SA+ P P+W +LTL+FQ EV ERI A+ HYGRL+VL+ WR+ A + Sbjct: 129 GTALLIGWLSAEWSPLPWWSTLTLMFQMEVAERIVAKPGGDHYGRLAVLSQWRSDARIAM 188 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 + F P PKV S V+H P P L+ L+++T AFG+RRK LRQSLK L G Sbjct: 189 KVHRSAFTPPPKVMSAVVHITPRPAPEGVQLKHLERLTATAFGQRRKMLRQSLKGLPGAL 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L GI+ RAE +S+E+F + +L Sbjct: 249 EALEAVGIDPQRRAETVSVEEFVEVARVL 277 >gi|330993925|ref|ZP_08317855.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter sp. SXCC-1] gi|329758871|gb|EGG75385.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter sp. SXCC-1] Length = 281 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/267 (41%), Positives = 164/267 (61%), Gaps = 6/267 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQ+FLLD I +IA +G L G V+E+G GPG LT+ LL Sbjct: 13 LRETIARHGLDARKALGQHFLLDPGITARIAGLAGDLAGQNVVEVGPGPGGLTRALLDSE 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V+ +E D + I+ +++S+ RLE+I+ DA+++D +P ++IANLPYN+ Sbjct: 73 AGRVVAVEVDTRAVAIITELASRAGGRLEVIEADAMRLDLTTL--CPAPRQVIANLPYNV 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+ W LTL+FQ+EV ERI A S HYGRL VL W + ++ Sbjct: 131 GTPLLVGWLRQAA---AWTRLTLMFQQEVAERICAAPGSAHYGRLGVLAQWTCRCGVLMH 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 I P F P P+V S V+ IPH + P +++++T AFG+RRK LR +LK LGGE+ Sbjct: 188 IPPGAFSPPPRVHSAVVGLIPHAHQPDAALFRAMEQVTAAAFGQRRKMLRGALKPLGGES 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275 LL +AGI+ + RAE L I +F R+ + Sbjct: 248 LLAEAGIDGSRRAETLDIAEFDRLARL 274 >gi|103486963|ref|YP_616524.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256] gi|118600899|sp|Q1GT31|RSMA_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|98977040|gb|ABF53191.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256] Length = 271 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 111/268 (41%), Positives = 155/268 (57%), Gaps = 3/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ + + + K +GQNFL D +L +IA G LDG TV E+G GPG LT+ LL G Sbjct: 4 LRETVRVHGLSASKALGQNFLFDEQLLDRIAAIPGDLDGATVFEVGPGPGGLTRALLRTG 63 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI +E+D++ P+L D++ P +L +I DDA+ VD + P I+ANLPYN+ Sbjct: 64 AR-VIAVERDERCLPLLADLAEAFPGQLTVIADDAMAVDVDALTG-GDPYHIVANLPYNV 121 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT L W+ WPP W SLTL+FQ EV ERI A + YGRL+VL WR +A + Sbjct: 122 GTALFTRWLEPAAWPPRWLSLTLMFQLEVAERIVAPVGTSAYGRLAVLAQWRARARIAMK 181 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + F P PKV S ++ P P L ++T++ FG+RRK LRQSLK + G Sbjct: 182 VHRSAFTPPPKVMSAIVQLTPADQPPGVDPRILSRLTEKGFGQRRKMLRQSLKGIDGAVA 241 Query: 250 LHQA-GIETNLRAENLSIEDFCRITNIL 276 +A GI+ RAE +S+ ++ + L Sbjct: 242 AAEALGIDPTRRAETVSVAEWVALARAL 269 >gi|329850882|ref|ZP_08265727.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19] gi|328841197|gb|EGF90768.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19] Length = 275 Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 166/273 (60%), Gaps = 7/273 (2%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ L + ++ KK GQ+FLLDLNI +KI G DG TVIE+G GPG LT+ LL Sbjct: 6 TLRESLEQHGLMAKKAFGQHFLLDLNITRKIVRLGGPFDGDTVIEVGPGPGGLTRALLES 65 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANL 125 A VI +EKD +F +L +++ +R E+I+ DALKVD + +S I++NL Sbjct: 66 EAAHVIAVEKDSRFLELLGELNEVFGDRFEVIEGDALKVDEAQLLADRKLSPQAHIVSNL 125 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+GT LL W++ W P +SLTL+FQ EV R+ A YGRLSV++ A+ Sbjct: 126 PYNVGTPLLIKWLTG-PWRP--KSLTLMFQLEVALRVVAPVGDDDYGRLSVISQILCDAS 182 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + D+ F P P+V S V+ IP + P P +++L+K+T AFG+RRK LR SLK L Sbjct: 183 KIMDLPARAFTPPPRVDSAVVRLIPKADRPAPAVIKNLEKVTAAAFGQRRKMLRSSLKSL 242 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 GGE LL +A I+ LRAE + + F R+ L+ Sbjct: 243 GGEVLLDKAAIDATLRAEQVGPDGFLRLATALS 275 >gi|16125931|ref|NP_420495.1| dimethyladenosine transferase [Caulobacter crescentus CB15] gi|27151598|sp|Q9A7N5|RSMA_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13423097|gb|AAK23663.1| dimethyladenosine transferase [Caulobacter crescentus CB15] Length = 258 Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 111/262 (42%), Positives = 160/262 (61%), Gaps = 9/262 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FLLDLN+ +KIA + +G TV+E+G GPG LT+ LL GAR V+ IEKD + Sbjct: 3 RKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETGAR-VVAIEKDSR 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 F P+L +++ RLE+++ DALKVD + P +++NLPYN+GT+LL NW++ Sbjct: 62 FLPLLAEVAEVAEGRLELVEGDALKVDAAQ--AAGGPAHVVSNLPYNVGTQLLINWLTG- 118 Query: 142 TWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF S+TL+FQKEV +RI AQ YGRL+V+ +A + D+ F P PK Sbjct: 119 ---PFRPLSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQTLCEARTVMDLPAKAFTPPPK 175 Query: 201 VTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S V+ +P P P + +L+++T AFG+RRK LR SLK LGG +L +AG+ + Sbjct: 176 VASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRSSLKALGGADLCERAGVSPDA 235 Query: 260 RAENLSIEDFCRITNILTDNQD 281 RAE + + F + D Sbjct: 236 RAEVIDLAGFLDLARATLGGAD 257 >gi|332185231|ref|ZP_08386980.1| dimethyladenosine transferase [Sphingomonas sp. S17] gi|332014955|gb|EGI57011.1| dimethyladenosine transferase [Sphingomonas sp. S17] Length = 274 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/268 (42%), Positives = 159/268 (59%), Gaps = 5/268 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K +GQNFL D +L +IA G L V+EIG GPG LT+ LL G Sbjct: 10 LRDVIARHGLSASKSLGQNFLFDGQLLARIAAIPGDLTDQEVLEIGPGPGGLTRALLMAG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 R V IE+D++ P L ++S P RL +I+ DAL+V+ + F I++NLPYN+ Sbjct: 70 GR-VTAIERDRRCIPALAELSEAFPGRLRVIEGDALRVNAPELFEGKP--HIVSNLPYNV 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+S W P+W+S TL+FQKEV ERI A + YGRL+VLT WR++A + Sbjct: 127 GTPLLVGWLSG-AWLPWWQSCTLMFQKEVAERIVAAADQSAYGRLAVLTQWRSQARIAMP 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGEN 248 + F P PKV S V+H P P +L+++T AFG+RRK LRQSLK + G Sbjct: 186 VHRSAFTPPPKVMSAVVHITPAPAPEGVTFRTLERLTAAAFGQRRKMLRQSLKPIPGAVE 245 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 L GI+ RAE LS+ +F + L Sbjct: 246 ALESIGIDPARRAETLSVAEFVALARAL 273 >gi|254420085|ref|ZP_05033809.1| dimethyladenosine transferase [Brevundimonas sp. BAL3] gi|196186262|gb|EDX81238.1| dimethyladenosine transferase [Brevundimonas sp. BAL3] Length = 269 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 115/270 (42%), Positives = 164/270 (60%), Gaps = 7/270 (2%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SL+ L + ++ KK GQ+FLLDLN+ +KI +G +G VIE+G GPG LT+ LL Sbjct: 6 SLRETLDAHGLLAKKSFGQHFLLDLNVTRKIVRLAGPFEGRAVIEVGPGPGGLTRALLES 65 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A V+++EKD +F P+L ++ RL I++ DALKV +S P +++NLPYN Sbjct: 66 DAGPVVLVEKDPRFIPLLSELDDGS-GRLTIVEADALKVKEADL--VSGPAHMVSNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +GT LL W++ W P SLTL+FQKEV ER+ A YGRL+V++ A ++ Sbjct: 123 VGTALLIKWLTG-PWLP--HSLTLMFQKEVAERVAAGPGDDAYGRLAVISQAVCTARIVM 179 Query: 189 DISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + F P PKV S V+H +P P P L+ L+++T AFG+RRK LR SLK+LGG Sbjct: 180 HLPAAAFTPPPKVASAVVHLVPLDERPSPERLKKLERVTAAAFGQRRKMLRSSLKQLGGA 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L AGIE ++RAE + + F R+ + L Sbjct: 240 ELCEAAGIEPDVRAETVDVAGFLRLADALA 269 >gi|162149099|ref|YP_001603560.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] gi|209545158|ref|YP_002277387.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] gi|161787676|emb|CAP57272.1| putative dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] gi|209532835|gb|ACI52772.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] Length = 275 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 108/274 (39%), Positives = 161/274 (58%), Gaps = 6/274 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + +K +GQ+FLLD I +IA +G L G V+E+G GPG LT+ LL Sbjct: 5 LRDVIARHGLDARKALGQHFLLDPGITARIAALAGDLTGRHVVEVGPGPGGLTRALLDSP 64 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +E D + I+ ++++ P RL +++ DA + D + +P +++ANLPYN+ Sbjct: 65 AETVTAVEVDARAVAIIAELATLFPGRLHLVEADATRQDLTRL--CPAPRQVVANLPYNV 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+ + WE LTL+FQ EV ERI A +S YGRL+VL W + ++ Sbjct: 123 GTPLLVGWLRQAS---AWERLTLMFQMEVAERICAAPDSAQYGRLAVLAQWTCRCALVMR 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 I P F P PKV S V+ IPH P P +++++T AFG+RRK LR SL+ +GGE Sbjct: 180 IPPGAFSPPPKVYSAVVSLIPHATQPDPALFRAMEQVTAAAFGQRRKMLRGSLRPIGGEA 239 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 LL AGI+ RAE L I +F + + Q + Sbjct: 240 LLAAAGIDGARRAETLDIAEFDLLARCHAERQGL 273 >gi|297717804|gb|ADI50045.1| dimethyladenosine transferase [Candidatus Odyssella thessalonicensis L13] Length = 281 Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 8/273 (2%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++K + Y ++ KK +GQNFL ++ I++KIA S+G L +TV+EIG GPG LT+ LL Sbjct: 8 TVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRALLEA 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GA++V+ IE D + LK++ +L+IIQ DAL + + S PI+I+ANLPYN Sbjct: 68 GAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQADALTISPQDLLP-SRPIKIVANLPYN 126 Query: 129 IGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +GT+LL W+ D S+TL+FQKEV RI AQ + YGRL+VL + T+ T + Sbjct: 127 VGTQLLIRWLHCLDN----IVSMTLMFQKEVALRIVAQPKTADYGRLTVLAQYLTQPTKV 182 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 FD+ P F P PKV S+++H +P + L L+KIT AFG+RRK +R SL + Sbjct: 183 FDLPPGAFSPPPKVKSSIVHLVPKVLSEQDLALLPYLEKITHAAFGQRRKMIRSSLSAVL 242 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E+ + A + RAE L++E++ + IL D Sbjct: 243 TEDQIQAANVAVTARAEELALENYIELARILKD 275 >gi|307294656|ref|ZP_07574498.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1] gi|306879130|gb|EFN10348.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1] Length = 280 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/275 (40%), Positives = 161/275 (58%), Gaps = 5/275 (1%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 K L+ +++ + + K +GQNFLLD +L +IA G + E+G GPG LT+ Sbjct: 6 GTKLPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPIKDRPAFEVGPGPGGLTR 65 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 +L GA K++ +E+D + P L ++ + P +L +I DA++VD IIA Sbjct: 66 AILRAGA-KLVAVERDHRCLPALAELDTAFPGQLRVISGDAMEVDARA--EAGEGAHIIA 122 Query: 124 NLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYN+GT LL W+S + P P+W SLTL+FQ EV ERI A+ HYGRL++L+ WR+ Sbjct: 123 NLPYNVGTALLIGWLSTNWTPLPWWSSLTLMFQMEVAERIVAKPGGDHYGRLAILSQWRS 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 A + + F P PKV S V+H P P L+ L+++T AFG+RRK LRQSLK Sbjct: 183 DARIAMKVHRSAFTPPPKVMSAVVHITPKRAPEGVQLKHLERLTAAAFGQRRKMLRQSLK 242 Query: 243 RLGGE-NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G + L GI+ RAE +S+E+F + ++ Sbjct: 243 GLPGALDALEAVGIDPQRRAETVSVEEFVAVARVM 277 >gi|197105173|ref|YP_002130550.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1] gi|226732606|sp|B4RBS4|RSMA_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|196478593|gb|ACG78121.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1] Length = 285 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 116/267 (43%), Positives = 162/267 (60%), Gaps = 7/267 (2%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ L + + KK GQ+FLLDLNI +KIA + DG VIE+G GPG LT+ LL Sbjct: 8 TLREALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLET 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GAR VI +EKD++F P+L++++ P+ L ++ DAL D E + P +++NLPYN Sbjct: 68 GAR-VIAVEKDERFRPLLQEVADAAPH-LTLVFGDALTAD-EAALSAGRPAHLVSNLPYN 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +GT LL W++ W P SLTL+FQKEV +RITA YGRL+V+ A + Sbjct: 125 VGTPLLIKWLTG-PWTP--ASLTLMFQKEVADRITAAPGEDAYGRLAVIAQATADARPVM 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 D+ F P PKV S V+ P P P L++L+K+T AFG+RRK LR SLK LGGE Sbjct: 182 DVPARAFTPPPKVESAVVRLEPRAARPSPERLDALQKVTAAAFGQRRKMLRSSLKALGGE 241 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 L+ AG++ RAE + + F + + Sbjct: 242 PLITAAGLDPAARAEVVPVAGFLALAD 268 >gi|148261607|ref|YP_001235734.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5] gi|146403288|gb|ABQ31815.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5] Length = 272 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 105/277 (37%), Positives = 162/277 (58%), Gaps = 6/277 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + L+ +++ + + K+ +GQ+FLLD ++L +IA +G LDG+ VIE+G GPG LT Sbjct: 1 MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLDGVNVIEVGPGPGGLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A V IE D + + ++++ P RL +++ +D + + +P I+ Sbjct: 61 RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVLEG--DALDLDLAALVPAPRAIV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN GT +L W+ + S+TL+FQ+EV ERI A SP YGRL+VL Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + ++ + P F P PKV S V+ +PH + + P L ++++T AFG+RRK LR SL Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVERVTAAAFGQRRKMLRGSL 235 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K LGG L AGI+ + RAE L+ +F + +L D Sbjct: 236 KALGGATLAEAAGIDPSRRAETLAPAEFLSLARLLPD 272 >gi|302383692|ref|YP_003819515.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC 15264] gi|302194320|gb|ADL01892.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC 15264] Length = 270 Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 111/265 (41%), Positives = 161/265 (60%), Gaps = 7/265 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ L + ++ KK GQ+FLLDLNI +KI +G +G VIE+G GPG LT+ ++ Sbjct: 7 LRESLEAHGLLAKKSFGQHFLLDLNITRKIVRLAGPFEGRAVIEVGPGPGGLTRAIVESD 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V+++EKD +F P+L ++ + RL II+ DALKV ++ P +++NLPYN+ Sbjct: 67 AGPVVLVEKDPRFLPLLNELDTGD-GRLRIIEADALKVVEADL--VAGPAHVVSNLPYNV 123 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W++ W P ++TL+FQKEV ERI A YGRL+V+ +A ++ Sbjct: 124 GTPLLIKWLTG-PWIP--HAMTLMFQKEVAERIVAAPGDDAYGRLAVIAQAVAEARIVMH 180 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F P PKV S V+H +PH + P L+ L+ +T AFG+RRK LR SLK+LGG Sbjct: 181 LPAAAFTPPPKVASAVVHLVPHADRPDREMLKRLETVTAAAFGQRRKMLRSSLKQLGGGA 240 Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273 L AGI+ + RAE + I F R+ Sbjct: 241 LCEAAGIDPDARAETIDIAGFLRLA 265 >gi|326405097|ref|YP_004285179.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium multivorum AIU301] gi|325051959|dbj|BAJ82297.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium multivorum AIU301] Length = 272 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 105/277 (37%), Positives = 161/277 (58%), Gaps = 6/277 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + L+ +++ + + K+ +GQ+FLLD ++L +IA +G L G+ VIE+G GPG LT Sbjct: 1 MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLAGVNVIEVGPGPGGLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A V IE D + + ++++ P RL +++ D +D + + +P I+ Sbjct: 61 RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVVEGD--ALDLDLAALVPAPRAIV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN GT +L W+ + S+TL+FQ+EV ERI A SP YGRL+VL Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + ++ + P F P PKV S V+ +PH + + P L + ++T AFG+RRK LR SL Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVGRVTAAAFGQRRKMLRGSL 235 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K LGG L AGI+ + RAE L+ +F + +L D Sbjct: 236 KALGGATLAEAAGIDPSRRAETLTPAEFLSLARLLPD 272 >gi|296532229|ref|ZP_06894977.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957] gi|296267446|gb|EFH13323.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957] Length = 235 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 104/232 (44%), Positives = 147/232 (63%), Gaps = 7/232 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG GPG LT+ LL A V +E D++ L+++S+ +P RL I++ DAL++D Sbjct: 1 MLEIGPGPGGLTRALLDSPAAHVTAVELDRRAIAALEELSAAYPGRLSIVEGDALRIDAA 60 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 + +P RI+ANLPYN+GT LL W+ +ESLTL+FQ+EV ERITA ++ H Sbjct: 61 TL--LPAPRRIVANLPYNVGTALLIGWLHRAE---LFESLTLMFQQEVAERITAAPDTEH 115 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEA 229 YGRL+VL+ WR + M + P F P PKV S ++H +PH P P + +L+++T A Sbjct: 116 YGRLAVLSQWRCQCRMTLRLPPGAFSPPPKVWSAIVHLVPHGTVPDPALMAALERVTAAA 175 Query: 230 FGKRRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 FG+RRK LR SLK LG E LL AGIE RAE LS+ +F R+ +L + Sbjct: 176 FGQRRKMLRSSLKTLGRPEALLEAAGIEATRRAETLSVAEFERLATLLLAQE 227 >gi|83945291|ref|ZP_00957640.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633] gi|83851461|gb|EAP89317.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633] Length = 284 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/283 (40%), Positives = 160/283 (56%), Gaps = 18/283 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + K GQ++LLDLN+ KIA G + TV E+G GPG LT+ LL+ G Sbjct: 9 LREVIAEHGLGADKRFGQHYLLDLNLTAKIARLCGDMSEATVFEVGPGPGGLTRGLLSEG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V VIEKD++F P L IS P R II+ DALKVD E + +NLPYN+ Sbjct: 69 AARVTVIEKDRRFIPALAQISDAVPGRFSIIEADALKVD-ESTLPFEGSRILASNLPYNV 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+ AD P +W L L+FQKEV ER+ A+ YGRL++L K+ F Sbjct: 128 GTALLIKWLEAD--PIWWTRLVLMFQKEVAERVVARAGDKQYGRLAILAAAVAKSRYAFT 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCC-----LESLKKITQEAFGKRRKTLRQSL--- 241 + F P PKV S V+ + P+P L++L +T+ AFG+RRKTLR+SL Sbjct: 186 VPARAFTPPPKVDSAVV----VIEPLPEAQRFTDLKALSIVTESAFGQRRKTLRKSLGPA 241 Query: 242 ---KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 R+ E LL +AGI+ RAE ++ E F + +D Sbjct: 242 ASQTRVSPEALLEEAGIDPGARAETIAPEGFFTLARAWRAARD 284 >gi|83032434|gb|ABB97063.1| mitochondrial transcription factor B-like protein [Acanthamoeba castellanii] Length = 307 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 169/288 (58%), Gaps = 17/288 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ++ Y++ K + QNF+LDLN+ K+A ++G L G TVIE+G GPG+LT+ LLT GA Sbjct: 11 RELVRLYRLSAVKELSQNFILDLNVTDKLARAAGPLRGSTVIEVGPGPGSLTRSLLTNGA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---------ISSPIRI 121 RKVIV+EKD++F P L+ + RLE++ D LK+D SP+RI Sbjct: 71 RKVIVVEKDKRFMPALETLQQASGGRLELVFGDMLKIDERDLLKNEPKAENWADESPVRI 130 Query: 122 IANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + NLP+ + T LL W+ + PF S+TL+FQ EVG+RI A+ + YGRLSV Sbjct: 131 VGNLPFAVATELLLKWLRQIPEREGPFAHGRASMTLMFQLEVGKRIEARSGTSEYGRLSV 190 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRK 235 +T A F++ VF P PKVT T++ P + P+ P ++ L+ + ++ FG+RRK Sbjct: 191 MTQQSCTAQTCFNVPASVFVPPPKVTGTMVRIEPRVTPLAPAPVKELEVVCRQVFGQRRK 250 Query: 236 TLRQSLKRLGGEN--LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L ++ LG + L+ +AG++ R + L++E++C + + D Sbjct: 251 MLSNAITTLGEGSLPLIARAGLDPTKRPDALTVEEWCSLARAYKEWMD 298 >gi|218660682|ref|ZP_03516612.1| dimethyladenosine transferase [Rhizobium etli IE4771] Length = 173 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 91/165 (55%), Positives = 123/165 (74%), Gaps = 1/165 (0%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG LT+ +L LG Sbjct: 10 LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGGLTRAILALG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI IE+D + P L +I+ +P RLE+I+ DALK DFE SP++IIANLPYN+ Sbjct: 70 AKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAP-ESPVKIIANLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVADEDDDHYGRL 173 >gi|315500017|ref|YP_004088820.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48] gi|315418029|gb|ADU14669.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48] Length = 277 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 11/276 (3%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQM 64 SL+ L + ++ KK GQ+FLLDLN+ +KI E S DG VIE+G GPG LT+ Sbjct: 5 SLRESLEAHGLMAKKSFGQHFLLDLNVTRKIVRLGQEGGNSFDGQVVIEVGPGPGGLTRA 64 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRI 121 L A V+ +EKD +F +L ++ + +P R +++ DALKV+ + + Sbjct: 65 ALESEATYVLAVEKDARFIDLLTELDTAYPGRFGVVEADALKVNEPALLAERGLPPQAHL 124 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ++NLPYN+GT LL W++ W P +SLTL+FQ EV R+ A YGRL V++ Sbjct: 125 VSNLPYNVGTPLLIKWLTG-PWQP--KSLTLMFQLEVALRVVAPVGDDDYGRLGVISQVL 181 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQS 240 + D+ F P PKV S V+ IP P + +L+ +T AFG+RRK LR S Sbjct: 182 CVCEKLMDLPARAFTPPPKVDSAVVRLIPRAERPDARVIHNLETLTAAAFGQRRKMLRAS 241 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL + GI+ LRAEN+S DF R+ L Sbjct: 242 LKALGGETLLAKVGIDPTLRAENISPADFLRLAEAL 277 >gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] Length = 244 Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 101/247 (40%), Positives = 148/247 (59%), Gaps = 5/247 (2%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L +IA G L + E+G GPG LT+ +L G R ++ +E+D + P L +++ P Sbjct: 1 MLDRIAAIPGPLTDASAFEVGPGPGGLTRAILRAGGR-LVAVERDDRCLPALAELADAFP 59 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLL 153 +L++I DA+++D + + IIANLPYN+GT LL W+SA P P+W SLTL+ Sbjct: 60 GQLKVIAGDAMQIDAQAEAGDGA--HIIANLPYNVGTPLLVGWLSAAWTPLPWWSSLTLM 117 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 FQ EV ERI A+ + HYGRL+VL+ WR+ A + + F P PKV S V+H P Sbjct: 118 FQMEVAERIVAKPGTDHYGRLAVLSQWRSDARIAMKVHRSAFTPPPKVMSAVVHITPKPT 177 Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-NLLHQAGIETNLRAENLSIEDFCRI 272 P L+ L+++T AFG+RRK +RQSLK L G + L GI+ RAE +S+E+F + Sbjct: 178 PEGVQLKLLERLTAAAFGQRRKMMRQSLKGLPGALDALDAEGIDPQRRAETVSVEEFVAV 237 Query: 273 TNILTDN 279 + N Sbjct: 238 ARRMGRN 244 >gi|209964862|ref|YP_002297777.1| dimethyladenosine transferase [Rhodospirillum centenum SW] gi|209958328|gb|ACI98964.1| dimethyladenosine transferase [Rhodospirillum centenum SW] Length = 276 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 158/279 (56%), Gaps = 10/279 (3%) Query: 3 MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + SH L+ +++ + + +K +GQ+FLLDLN+ ++I +G L G+ V+E+G GPG Sbjct: 1 MADLSHLPPLRDVIAEHGLGARKALGQHFLLDLNLTRRIVREAGDLSGVAVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ AR+V+ +E+D +F L D+ + RL +++ DAL VD + +P Sbjct: 61 LTRALVESAAREVVAVERDSRFAAALADVMAAADGRLRLVEADALTVDPVDL--VPAPRA 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +I+NLPYN+GT LL W+ + SLTL+FQKEV ERI A+ + YGRL+V+ W Sbjct: 119 VISNLPYNVGTPLLIGWLKRIAE---YRSLTLMFQKEVAERIVARPRTEAYGRLAVMCQW 175 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239 ++FD+ F P P+V S + H P P +++ + AFG+RRK LR Sbjct: 176 LADCRILFDVPARAFTPPPRVDSAIAHLTPRARPADDPDFRTMEALVAAAFGQRRKMLRA 235 Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SLK + E LL GI RAE + + F + L Sbjct: 236 SLKSVVREPEPLLESVGIAPTSRAEEVDVAGFVTLAKAL 274 >gi|114569772|ref|YP_756452.1| dimethyladenosine transferase [Maricaulis maris MCS10] gi|122316226|sp|Q0AQC3|RSMA_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|114340234|gb|ABI65514.1| dimethyladenosine transferase [Maricaulis maris MCS10] Length = 289 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 103/271 (38%), Positives = 154/271 (56%), Gaps = 17/271 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + KK GQ+FLLDLN+ KIA +G + IE+G GPG LT+ +L G Sbjct: 9 LRDVIASHDLGAKKSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGGLTRAILAEG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A ++ +E D +F L +I+ RL + Q DAL+VD I++NLPYN+ Sbjct: 69 AASLLAVEMDSRFLGALDEINVASGGRLTVEQGDALEVDETALLTGPGDKVILSNLPYNV 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL W+ A+ P +W L+FQ+EV +R+ AQ YGRL+V++ R +A + Sbjct: 129 GTQLLIKWLQAE--PIWWRRAVLMFQREVADRVVAQPGDKAYGRLAVISQSRCQAHLALK 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-----SLKKITQEAFGKRRKTLRQSLKRL 244 I F P PKV S V+ L+P+P + +L++IT AFG+RRKTLR+SL + Sbjct: 187 IPARAFTPPPKVESAVV----VLDPLPEAQQFKDVVALERITASAFGQRRKTLRRSLAQA 242 Query: 245 GGEN------LLHQAGIETNLRAENLSIEDF 269 G+ LL +AG+ RAE + I F Sbjct: 243 AGQGGTSADALLEEAGLNAGDRAEVIDITGF 273 >gi|58698105|ref|ZP_00373028.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535351|gb|EAL59427.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila ananassae] Length = 288 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 111/259 (42%), Positives = 151/259 (58%), Gaps = 12/259 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + ++ IEKD+ Sbjct: 24 PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 83 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + ++H + II+ DAL V E+ I P+++IANLPYNI L W++ Sbjct: 84 DLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVLFLKWLNN 141 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 F+ +LTL+FQKEV +RITA+ NS YG LSVL+ FDI P FFP PK Sbjct: 142 IK---FFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPK 198 Query: 201 VTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGI 255 + S+VI P PIP LE+L ++T+ F +RRK LR SL+ + E +L A + Sbjct: 199 IHSSVITVNPL--PIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKL 256 Query: 256 ETNLRAENLSIEDFCRITN 274 N R ENL+IE FC + N Sbjct: 257 SGNERPENLTIEQFCLLAN 275 >gi|225630006|ref|YP_002726797.1| dimethyladenosine transferase [Wolbachia sp. wRi] gi|254808269|sp|C0R5G4|RSMA_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225591987|gb|ACN95006.1| dimethyladenosine transferase [Wolbachia sp. wRi] Length = 272 Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 111/259 (42%), Positives = 151/259 (58%), Gaps = 12/259 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + ++ IEKD+ Sbjct: 8 PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + ++H + II+ DAL V E+ I P+++IANLPYNI L W++ Sbjct: 68 DLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVLFLKWLNN 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 F+ +LTL+FQKEV +RITA+ NS YG LSVL+ FDI P FFP PK Sbjct: 126 IK---FFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPK 182 Query: 201 VTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGI 255 + S+VI P PIP LE+L ++T+ F +RRK LR SL+ + E +L A + Sbjct: 183 IHSSVITVNPL--PIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKL 240 Query: 256 ETNLRAENLSIEDFCRITN 274 N R ENL+IE FC + N Sbjct: 241 SGNERPENLTIEQFCLLAN 259 >gi|304320043|ref|YP_003853686.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503] gi|303298946|gb|ADM08545.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503] Length = 273 Score = 188 bits (477), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 109/268 (40%), Positives = 153/268 (57%), Gaps = 9/268 (3%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 T++ + ++ KK +GQ+FLLD+NI +KIA G VIEIG GPG LT+ LL GA Sbjct: 12 TVVRSHGLLAKKTLGQHFLLDMNITRKIAALCALSPGEDVIEIGPGPGGLTRALLEAGA- 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + IE+D + PIL +IS+ P +L ++ DAL VD+ I +NLPYNI T Sbjct: 71 ALTTIERDDRIVPILSEISAAFPGQLTPLEGDALSVDYRALMPGGG--VIASNLPYNIST 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 LL W++ P W + L+FQ+EVG+RI A S YGRLSVL+ + T+ F + Sbjct: 129 ELLVRWLTLSPRP--WRRMVLMFQREVGDRILASPGSKAYGRLSVLSQIAARPTLGFHLP 186 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S+V+ F+P P + +L+++T AFG+RRK +R++L L GE L Sbjct: 187 ARAFTPPPKVASSVLVFLPPATE-PQNVAALERVTAAAFGQRRKMIRKTLAPLYGEKLGP 245 Query: 252 QAGIETNL---RAENLSIEDFCRITNIL 276 L RAE LS+E F + L Sbjct: 246 LLDGLGLLPTQRAEELSVETFRALAEAL 273 >gi|225677138|ref|ZP_03788137.1| dimethyladenosine transferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590805|gb|EEH12033.1| dimethyladenosine transferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 270 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/259 (42%), Positives = 152/259 (58%), Gaps = 12/259 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + ++ IEKD+ Sbjct: 8 PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + ++H + +II+ DAL V E+ I P+++IANLPYNI L W++ Sbjct: 68 DLVKHHDQLLNEHQGKYKIIEADALHVIEEEL--IERPVKVIANLPYNISVVLFLKWLNN 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 F+ +LTL+FQKEV +RITA+ NS YG LSVL+ FDI P FFP PK Sbjct: 126 IK---FFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIGPKEFFPRPK 182 Query: 201 VTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGI 255 + S+VI P PIP LE+L ++T+ F +RRK LR SL+ + E +L A + Sbjct: 183 IHSSVITVNPL--PIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHAETVLENAKL 240 Query: 256 ETNLRAENLSIEDFCRITN 274 N R ENL+IE FC + N Sbjct: 241 SGNERPENLTIEQFCLLAN 259 >gi|42519999|ref|NP_965914.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034443|ref|ZP_01314444.1| hypothetical protein Wendoof_01000753 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|62900551|sp|Q73IR3|RSMA_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|42409736|gb|AAS13848.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 286 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/261 (42%), Positives = 151/261 (57%), Gaps = 16/261 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + ++ IEKD+ Sbjct: 24 PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 83 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + ++H + II+ DAL + E+ I P+++IANLPYNI L W+ + Sbjct: 84 DLVKHHDQLLNEHQGKYRIIEADALHIIEEEL--IERPVKVIANLPYNISVALFLKWLDS 141 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 F+ SLTL+FQKEV +RITA+ NS YG LSVL+ FDI P FFP PK Sbjct: 142 IK---FFTSLTLMFQKEVADRITARPNSKDYGPLSVLSQLLCDIKKEFDIEPKEFFPRPK 198 Query: 201 VTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQA 253 + S+VI +NP+P LE+L K+ + F +RRK LR SL+ + E +L A Sbjct: 199 IHSSVI----TVNPLPTPKFVVNLETLIKLIRAVFAQRRKMLRNSLQNITNHAETVLENA 254 Query: 254 GIETNLRAENLSIEDFCRITN 274 + N R ENL+IE FC + N Sbjct: 255 KLSGNERPENLTIEQFCLLAN 275 >gi|329114154|ref|ZP_08242916.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter pomorum DM001] gi|326696230|gb|EGE47909.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter pomorum DM001] Length = 227 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 +E+G GPG LT+ LL A V +E D + ++++++ +PNRL++++ DALK D + Sbjct: 1 MEVGPGPGGLTRALLNGPAESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTE 60 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 ++P +IIANLPYN+ T LL W+ WE LTL+FQ EV ERI A NS HY Sbjct: 61 L--CAAPRQIIANLPYNVATPLLIGWLRQGN---AWERLTLMFQWEVAERICAAPNSQHY 115 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAF 230 GRL+VL W + ++ + P F P P V S V PH P P ++++++T AF Sbjct: 116 GRLAVLAQWCAECAIVMKLPPGAFSPPPAVWSAVASITPHAQQPAPALFKAMERVTAAAF 175 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 G+RRK LR +LK L G+ LL A I+ RAE L I +F R+ Sbjct: 176 GQRRKMLRGALKGLNGDKLLAAAEIDGTRRAETLDIAEFDRLAR 219 >gi|328873034|gb|EGG21401.1| Dimethyladenosine transferase [Dictyostelium fasciculatum] Length = 470 Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 162/287 (56%), Gaps = 21/287 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ ++ Y + K+ + QNFLLDLNI KI +G TVIE+GAGPG LT+ LLT G Sbjct: 9 IQDLIRMYGLSAKQQLSQNFLLDLNITDKICREAGGFKDCTVIEVGAGPGGLTRSLLTAG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD---------FEKF-FNISSPI 119 A+KVI +E D++F P L+ + RL ++ D +KVD EK + S + Sbjct: 69 AKKVIAVEMDRRFIPALRMLEEASEGRLSVVMGDMMKVDEGELLRHFQAEKMPWEEKSKV 128 Query: 120 RIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 +I+ NLP+N+GT L+ W+ + + L+FQKE+ ERI A +S +YGRL Sbjct: 129 KIVGNLPFNVGTHLMLKWVRQIKPREGLYAYGRVPMVLMFQKELAERIIAPVDSHNYGRL 188 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGK 232 +V+ G + +++D+ VF P PKV ++VIH P + PI E L+ I + F Sbjct: 189 AVMVGQECHSKIIYDLPGKVFVPPPKVDASVIHIEPLVEPIGQVDSKEHLEFICRSLFNH 248 Query: 233 RRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 RRKT+ +LK + G E LL I+ + R ++L+ ++F ITN T Sbjct: 249 RRKTISNALKPMGKGSEGLL--GDIDPSRRPQSLTFKEFADITNRYT 293 >gi|57239132|ref|YP_180268.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] gi|58579080|ref|YP_197292.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] gi|93141342|sp|Q5HBC6|RSMA_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|57161211|emb|CAH58125.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] gi|58417706|emb|CAI26910.1| Dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] Length = 262 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/266 (39%), Positives = 152/266 (57%), Gaps = 10/266 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +Y I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +K+I Sbjct: 3 DNYMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLI 62 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133 IEKD + PI I + + E I DAL +D NI+ P+++IANLPY+I T L Sbjct: 63 SIEKDSRLLPIHDKIIKKFQGKYEFILSDALDIDLR---NIAKPPVKVIANLPYSIATLL 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L WI+ + F+ S TL+FQKEV +RI AQ N+ +YG LS+LT M D P Sbjct: 120 LIKWIN---YINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPE 176 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250 +F P PKV S+VI+ + P + L+KI + F +RRK +R +LK++ + +L Sbjct: 177 IFSPKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEIL 236 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 H I NLR ENLSI+ FC I N + Sbjct: 237 HSLNIPNNLRPENLSIKQFCDIANCI 262 >gi|58617138|ref|YP_196337.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel] gi|93141341|sp|Q5FH30|RSMA_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58416750|emb|CAI27863.1| Dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel] Length = 262 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/266 (39%), Positives = 152/266 (57%), Gaps = 10/266 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +Y I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +K+I Sbjct: 3 DNYMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLI 62 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133 IEKD + PI I + + E I DAL +D NI+ P+++IANLPY+I T L Sbjct: 63 SIEKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLR---NIAKPPVKVIANLPYSIATLL 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L WI+ + F+ S TL+FQKEV +RI AQ N+ +YG LS+LT M D P Sbjct: 120 LIKWIN---YINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPE 176 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250 +F P PKV S+VI+ + P + L+KI + F +RRK +R +LK++ + +L Sbjct: 177 IFSPKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEIL 236 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 H I NLR ENLSI+ FC I N + Sbjct: 237 HSLNIPNNLRPENLSIKQFCDIANCI 262 >gi|73667017|ref|YP_303033.1| dimethyladenosine transferase [Ehrlichia canis str. Jake] gi|119365025|sp|Q3YS70|RSMA_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72394158|gb|AAZ68435.1| dimethyladenosine transferase [Ehrlichia canis str. Jake] Length = 262 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/263 (40%), Positives = 148/263 (56%), Gaps = 14/263 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +++I IE Sbjct: 6 RIYPKKELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD + PI K I + + E I DAL +D I P++IIANLPY+I T LL W Sbjct: 66 KDSRLMPIHKKIVDEFNGKYEFILSDALNIDLRTI--IEPPVKIIANLPYHIATPLLMKW 123 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I+ + F+ S TL+FQKEV +RI AQ N+ +Y LSVL + M D P +F P Sbjct: 124 IN---YIDFFTSFTLMFQKEVADRIVAQPNNKNYSILSVLIQLLSNVYKMEDFGPEIFSP 180 Query: 198 SPKVTSTVIHFI----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLH 251 PKV S+VI+ I P N L ++ + FG+RRK +R +LK+L + +L Sbjct: 181 QPKVMSSVINIIVLPKPRFN---VNHNKLSQVLKVTFGERRKMIRSTLKKLINNTDEILQ 237 Query: 252 QAGIETNLRAENLSIEDFCRITN 274 I NLR ENLSIE FC+I N Sbjct: 238 SLNINNNLRPENLSIEQFCKIAN 260 >gi|190570949|ref|YP_001975307.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019465|ref|ZP_03335271.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226732639|sp|B3CPY6|RSMA_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|190357221|emb|CAQ54639.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994887|gb|EEB55529.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 264 Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 106/257 (41%), Positives = 148/257 (57%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNF+L I+K+I +GSL VIEIG G G LT+ +L + ++ IEKD Sbjct: 8 PKKSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFLLSIEKDS 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + ++H + II+ DAL V ++ + P+++IANLPYNI L W++ Sbjct: 68 SLVKHHEQLLNEHQGKYRIIEADALNVVEKEL--VECPVKVIANLPYNISVALFLKWLNN 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 F+ +LTL+FQKEV ERITA+ NS YG LSVL+ FDI P FFP PK Sbjct: 126 IK---FFTNLTLMFQKEVAERITAEPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPK 182 Query: 201 VTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIET 257 V S+VI P P LE+L K+T+ F +RRK LR SL+ + + L A + Sbjct: 183 VYSSVITVKPLPTPRFAVNLETLTKLTRAVFAQRRKMLRNSLQSITSDVSTTLENAKLSG 242 Query: 258 NLRAENLSIEDFCRITN 274 + R E+L+IE FC + N Sbjct: 243 DERPESLTIEQFCLLAN 259 >gi|114799371|ref|YP_760849.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444] gi|114739545|gb|ABI77670.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444] Length = 285 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 105/270 (38%), Positives = 149/270 (55%), Gaps = 21/270 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K +GQ+FL D +ILK+ A ++G L G TVIE+G GPG LT+ +L +I +E D + Sbjct: 23 RKALGQHFLFDPSILKRAANAAGPLKGKTVIEVGPGPGGLTRAILNEEPALLIAVETDPR 82 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNIGTRLLFNWI 138 F L RL++I DA KV +EK ++P+ IIANLPYN+GT LL +W+ Sbjct: 83 FSEALMSWPEAKNGRLQVIARDARKVHWEKVLQEAGAATPVMIIANLPYNVGTPLLIDWL 142 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 A W + L+FQ+EV ERI AQ ++ YGRL+V++ T+ + F + P F P Sbjct: 143 KAGDW---RGPMALMFQREVAERICAQPDTDAYGRLAVISQAVTRPRIAFTLPPGAFRPP 199 Query: 199 PKVTSTVIHFIPHLNPIPCC-----LESLKKITQEAFGKRRKTLRQSLKRLG------GE 247 PKV S V+ F P+P L L++I AFG+RRK LR +LK E Sbjct: 200 PKVDSAVVEF----EPLPPGERFEHLALLEQIAGAAFGQRRKMLRAALKPFAKKRGMKAE 255 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI+ RAE L+ +F ++ L Sbjct: 256 AWLEDCGIKPTARAETLTQAEFRKLATSLA 285 >gi|254294291|ref|YP_003060314.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814] gi|254042822|gb|ACT59617.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814] Length = 274 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 105/264 (39%), Positives = 145/264 (54%), Gaps = 19/264 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+FL D +IL + A S+G ++G TVIE+G GPG LT LL GA+KVI +E D +F Sbjct: 13 KSLGQHFLFDPDILNRTALSAGPVEGRTVIEVGPGPGGLTAALLRNGAKKVIAVEMDARF 72 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ RL +I+ D L +D+ K P++IIANLPYN+GT +L NWI + Sbjct: 73 AENLRSWKEYKEGRLSVIEGDGLSLDYPKLVEGEDKPVKIIANLPYNVGTPMLINWIKSG 132 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +W + L+FQ EV R+ AQ HYGRL+VL+ + F + P F P PKV Sbjct: 133 SW---RGEMGLMFQHEVAARVCAQPGEKHYGRLAVLSQAVANTHIAFTLPPGAFKPPPKV 189 Query: 202 TSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLL 250 S+V + P+P L +L+++T AFG+RRK LR SLK L L Sbjct: 190 DSSVAVLM----PLPEDKKYTHLSTLEQVTGAAFGQRRKMLRASLKSLAKTKNMDASEWL 245 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 I+ RAE L +F +T Sbjct: 246 ESCDIDPTRRAETLEQFEFRALTE 269 >gi|68171878|ref|ZP_00545205.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa] gi|88658336|ref|YP_507457.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas] gi|67998701|gb|EAM85426.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa] gi|88599793|gb|ABD45262.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas] Length = 277 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/268 (38%), Positives = 153/268 (57%), Gaps = 9/268 (3%) Query: 13 ILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I++H KI PKK + Q F+ +I +I +G++ ++IEIG G G +T +L + Sbjct: 14 IMNHISKINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPK 73 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 K+I IEKD++ I + I + + E I DAL +D I P+++IANLPY+I T Sbjct: 74 KLISIEKDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIAT 131 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 LL W+ + F+ S TL+FQKEV +RI AQ N+ +YG LS+L + M D Sbjct: 132 TLLIKWMD---YINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFG 188 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248 P +F P PKV S+VI+ I P L ++ + F +RRK +R +LK+L + Sbjct: 189 PEIFSPQPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADE 248 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 +L I+ NLR ENLSIE FC+ITN + Sbjct: 249 MLESLNIDNNLRPENLSIEQFCQITNCI 276 >gi|118600867|sp|Q2GGH6|RSMA_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 263 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/262 (38%), Positives = 149/262 (56%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI PKK + Q F+ +I +I +G++ ++IEIG G G +T +L +K+I IE Sbjct: 6 KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD++ I + I + + E I DAL +D I P+++IANLPY+I T LL W Sbjct: 66 KDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIATTLLIKW 123 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F+ S TL+FQKEV +RI AQ N+ +YG LS+L + M D P +F P Sbjct: 124 MD---YINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFGPEIFSP 180 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254 PKV S+VI+ I P L ++ + F +RRK +R +LK+L + +L Sbjct: 181 QPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADEMLESLN 240 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I+ NLR ENLSIE FC+ITN + Sbjct: 241 IDNNLRPENLSIEQFCQITNCI 262 >gi|157826080|ref|YP_001493800.1| dimethyladenosine transferase [Rickettsia akari str. Hartford] gi|166221695|sp|A8GPG7|RSMA_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157800038|gb|ABV75292.1| dimethyladenosine transferase [Rickettsia akari str. Hartford] Length = 273 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/278 (39%), Positives = 155/278 (55%), Gaps = 20/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K + SH +I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 7 KHVASH-QINPLKKHGQNFIFDSSLCDKIVRASHLAENSRVLEIGPGTGGLTRSILQKNP 65 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANL 125 + VIE D++F P+L +I +PN L II+ DALK+ D++K + II+NL Sbjct: 66 ESLTVIETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDLDYDK-------VTIISNL 117 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+IGT L+ W+ +TL+ QKEV ERI A ++ YGRLSV+ K Sbjct: 118 PYHIGTELVIRWLKEAR---LITDMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVE 174 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL 244 FD+SP F+P PKV S ++ IP NP L ++KIT AF RRK ++ SLK L Sbjct: 175 KCFDVSPTAFYPPPKVYSAIVKLIPLANPPSIALINRVEKITTFAFAGRRKMIKSSLKNL 234 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L Q I N RAENL+ +D+ RI L+ N+ Sbjct: 235 VPNIHEVLTQLKINDNYRAENLAPQDYLRIAMSLSVNK 272 >gi|58584664|ref|YP_198237.1| dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311641|sp|Q5GSM9|RSMA_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58418980|gb|AAW70995.1| Dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 261 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/268 (38%), Positives = 149/268 (55%), Gaps = 16/268 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I K+I +G+L+ VIEIG G G LT+ +L + + Sbjct: 1 MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD + ++H + I++ DAL V E+ I P+++IANLPYNI L Sbjct: 61 LAIEKDSNLVKCHDQLLNEHQGKFRIVEADALYVVEEEL--IERPVKVIANLPYNISLAL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 W++ + + TL+FQKEV +RI A+ NS YG LSVL+ FDI P Sbjct: 119 FLKWLNKIK---LFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPK 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 FFP PKV S+VI + P+P LE+L K+T+ F +RRK LR SL+ + Sbjct: 176 EFFPRPKVYSSVI----TVKPLPTQRFAVNLEALTKLTRAVFAQRRKMLRNSLQNVTNRT 231 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E L A + N R +NL++E FC + N Sbjct: 232 ETALENAKLSGNERPKNLTVEQFCLLAN 259 >gi|58696723|ref|ZP_00372268.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila simulans] gi|58537091|gb|EAL60211.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila simulans] Length = 313 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/297 (38%), Positives = 153/297 (51%), Gaps = 47/297 (15%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + ++ IEKD+ Sbjct: 8 PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--- 137 + ++H + II+ DAL V E+ I P+++IANLPYNI L W Sbjct: 68 DLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVLFLKWLNN 125 Query: 138 --ISADT------------------------------W---PPFWESLTLLFQKEVGERI 162 I AD W F+ +LTL+FQKEV +RI Sbjct: 126 RIIEADALHVTEEELIERPVKVIANLPYNISVVLFLKWLNNIKFFTNLTLMFQKEVADRI 185 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCL 219 TA+ NS YG LSVL+ FDI P FFP PK+ S+VI P PIP L Sbjct: 186 TARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPKIHSSVITVNPL--PIPKFAVNL 243 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274 E+L ++T+ F +RRK LR SL+ + E +L A + N R ENL+IE FC + N Sbjct: 244 ETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKLSGNERPENLTIEQFCLLAN 300 >gi|281200359|gb|EFA74579.1| Dimethyladenosine transferase [Polysphondylium pallidum PN500] Length = 410 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 165/288 (57%), Gaps = 21/288 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ ++ Y + K+ + QNFLLDLNI KI +G + TVIE+GAGPG LT+ LL G Sbjct: 11 IQDLIRLYGLSAKQQLSQNFLLDLNITDKICRVAGGFNDCTVIEVGAGPGGLTRSLLNSG 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKF------FNISSPI 119 A+KVI +E D++F P LK + RL ++ D V+ ++F ++ S + Sbjct: 71 AKKVIAVEMDRRFIPALKMLEDASDGRLSVVMGDMKDVNEAEILKQFGAVPTDWDKPSKV 130 Query: 120 RIIANLPYNIGTRLLFNWISA-DTWPPFWE----SLTLLFQKEVGERITAQKNSPHYGRL 174 +II NLP+N+GT L+ WI +E + L+FQKE+ +RI A +S YGRL Sbjct: 131 KIIGNLPFNVGTHLMLKWIRQIKPREGLFEFGRVPMILMFQKELADRIIAPVSSHEYGRL 190 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232 +V+ + +++D+ VF P PKV ++V++ P + PI E L+ + +E F + Sbjct: 191 AVMIQQECDSKVVYDLPGKVFVPPPKVDASVVYIEPKVKPIGDLKSKEYLEYVCRELFTQ 250 Query: 233 RRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +RKTL ++K L G E+L+ GI+ R +NL++E+ +I+N D Sbjct: 251 KRKTLGNAIKCLGNGAESLIE--GIDPTKRPQNLTVEELVKISNRFND 296 >gi|66808105|ref|XP_637775.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4] gi|60466213|gb|EAL64275.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4] Length = 485 Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 165/303 (54%), Gaps = 32/303 (10%) Query: 1 MTMNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54 MT+ N + SL + I+ + + K+ + QNFL+D NI KI + SG D TVIE+ Sbjct: 1 MTIKNLTTSLPPMPKIQEIIRIFGLSAKQQLSQNFLIDKNITDKICKKSGGFDDCTVIEV 60 Query: 55 GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 GAGPG LT+ LLT GA+KVI +E D +F+P LK + R+ +I + + VD K Sbjct: 61 GAGPGGLTRSLLTSGAKKVIAVEMDPRFYPALKMLEESSGGRMSLIMANMMDVDEAKLLR 120 Query: 115 IS----------SPIRIIANLPYNIGTRLLFNWISA-DTWPPFWE----SLTLLFQKEVG 159 + S ++II NLP+N+GT L+ WI +E + L+FQKE+ Sbjct: 121 DAGAETTNWKDKSKVKIIGNLPFNVGTHLMLKWIRQIAPRQGLYEFGRVPMYLMFQKELS 180 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 +RI AQ S Y RLSV+ + ++++ I F P PKV ++V+ P ++P+ Sbjct: 181 DRICAQVGSEEYSRLSVMVQQMCQPSIVYSIPGTAFVPPPKVDASVVAIEPRISPLGD-- 238 Query: 220 ESLKK------ITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCR 271 E +K + +E F +RRK L ++K LG E+LL I+ +R +NL IE F + Sbjct: 239 EPVKDHHYFEFVCRELFSQRRKKLSNTIKTLGKDAESLLGD-DIDPKIRTQNLQIEQFVK 297 Query: 272 ITN 274 ITN Sbjct: 298 ITN 300 >gi|241068617|ref|XP_002408487.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis] gi|215492475|gb|EEC02116.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis] Length = 278 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/273 (38%), Positives = 151/273 (55%), Gaps = 15/273 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L + Sbjct: 10 ASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQKKPESLT 69 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIRIIANLP 126 VIE D++ P+L +I +PN L II+ DALK++ +I + II+NLP Sbjct: 70 VIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSSKSIDYKVTIISNLP 128 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y+IGT L+ W+ ++TL+ QKEV ERI A ++ YGRLSV+ K Sbjct: 129 YHIGTELVIRWLKEAR---LINNMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVEK 185 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL- 244 FD++P F+P PKV S ++ IP NP L +++IT+ AF RRK ++ SLK L Sbjct: 186 CFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLV 245 Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L Q I N RAENL+ +D+ RI IL Sbjct: 246 PNIHEVLTQLKINDNYRAENLTPQDYLRIAEIL 278 >gi|157827650|ref|YP_001496714.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389] gi|166221696|sp|A8GXS7|RSMA_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157802954|gb|ABV79677.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389] Length = 268 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 150/265 (56%), Gaps = 9/265 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + ++I P K GQNF+ D ++ KI +SG + V+EIG G G LT+ +L + + Sbjct: 10 ASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILHKNPKLLT 69 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE D++ P+L +I HPN L II+ DALK+ ++ I II+NLPY+IGT L+ Sbjct: 70 VIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDLN--TNKITIISNLPYHIGTELV 126 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 W+ + S+TL+ QKEV ERI A+ ++ YGRLSV+ FD++P Sbjct: 127 IRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKCFDVAPTA 183 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLH 251 F+P PKV S ++ P N P + ++ IT+ AF RRK ++ SLK L LL Sbjct: 184 FYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAPNISELLA 243 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 + I N RAENL+ D+ + +++ Sbjct: 244 KLNISNNCRAENLTPNDYLSLASLI 268 >gi|91205019|ref|YP_537374.1| dimethyladenosine transferase [Rickettsia bellii RML369-C] gi|119365058|sp|Q1RK29|RSMA_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91068563|gb|ABE04285.1| Dimethyladenosine transferase [Rickettsia bellii RML369-C] Length = 268 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 150/265 (56%), Gaps = 9/265 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + ++I P K GQNF+ D ++ KI +SG + V+EIG G G LT+ +L + + Sbjct: 10 ASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILHKNPKLLT 69 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE D++ P+L +I HPN L II+ DALK+ ++ I II+NLPY+IGT L+ Sbjct: 70 VIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDLN--TNKITIISNLPYHIGTELV 126 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 W+ + S+TL+ QKEV ERI A+ ++ YGRLSV+ FD++P Sbjct: 127 IRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKCFDVAPTA 183 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLH 251 F+P PKV S ++ P N P + ++ IT+ AF RRK ++ SLK L LL Sbjct: 184 FYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAPNISELLA 243 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 + I N RAENL+ D+ + +++ Sbjct: 244 KLNISDNCRAENLTPNDYLSLASLI 268 >gi|269958833|ref|YP_003328621.1| dimethyladenosine transferase [Anaplasma centrale str. Israel] gi|269848663|gb|ACZ49307.1| dimethyladenosine transferase [Anaplasma centrale str. Israel] Length = 270 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 98/261 (37%), Positives = 150/261 (57%), Gaps = 9/261 (3%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNF+LD I ++I +GS++G +IE+G G G +T+++L ++ IEKD + Sbjct: 10 KSLGQNFILDPAIAEEIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAIEKDCRL 69 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 P + + QHP+ I+ D L ++ E+ I++P ++IANLPYNI LL + Sbjct: 70 SPTHESLMKQHPH-YRYIEHDVLDINLEEL--IAAPSKMIANLPYNISVILLLRMLK--- 123 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + +E LTL+FQKEV ER+ A+ + Y LSVL + D+ PHVF P PKV Sbjct: 124 YIHNFERLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPHVFSPPPKVC 183 Query: 203 STVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNL 259 S+V++ P N P + K+ ++AFG +RKT+R +L E LL + I ++ Sbjct: 184 SSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALLAECKIPPSV 243 Query: 260 RAENLSIEDFCRITNILTDNQ 280 RAENLS+E C ++N L Q Sbjct: 244 RAENLSVEQLCAVSNFLQSRQ 264 >gi|256823429|ref|YP_003147392.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069] gi|256796968|gb|ACV27624.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069] Length = 269 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/261 (39%), Positives = 149/261 (57%), Gaps = 8/261 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D + +++I ES + ++EIG G G +T+ L+ ++ V+E D+ Sbjct: 13 RKRFGQNFLSDNHYIQRIVESIAPQESDRLVEIGPGLGAITEHLVD-KVSELHVVELDRD 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L+ SQ+ N L I Q DALK DF + N PIR++ NLPYNI T L+F+ ++ Sbjct: 72 LIPRLEQKFSQNTN-LTIHQSDALKFDFRQLAN-DKPIRVVGNLPYNISTPLIFHLLNQR 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV ERI AQ + YGRLSV+T + +A ++F + P F P PKV Sbjct: 130 ES---IKDMYFMLQKEVVERICAQPGTSSYGRLSVMTQYYCQADLLFLVPPGAFQPPPKV 186 Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ P+ + P P E L +I AFG+RRKTLR SLK+ E L Q GI+ Sbjct: 187 ESAIVRLQPYCDLPYPVQDEQLLGQIVTAAFGQRRKTLRNSLKKFINETGLEQLGIKPTE 246 Query: 260 RAENLSIEDFCRITNILTDNQ 280 RAE LS+ F I + + NQ Sbjct: 247 RAEQLSLSQFVDICHQVELNQ 267 >gi|194467627|ref|ZP_03073614.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23] gi|194454663|gb|EDX43560.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23] Length = 297 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 159/283 (56%), Gaps = 22/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y I KK GQNFL DLN+LK I E++ D VIEIG G G LT+ L A Sbjct: 14 RAIMEKYGIHTKKSFGQNFLTDLNVLKNIVEAADITDNDNVIEIGPGIGALTEQLAQ-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +V+ +E DQ P+LK++ S + N +++I D L+ + ++F + S PI+++ANL Sbjct: 73 GEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEFKDPSRPIKVVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +L N +++ P W ++ ++ QKEV +R+TA+ + YG L++ ++ +A Sbjct: 132 PYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYGALTLAIEYQMQAK 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242 + FD+S VF PSP V S ++ P NP+P +K+ + F RRK+L +L+ Sbjct: 189 IAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQ 248 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 + G++ +L Q I +R E L++E F + N L Sbjct: 249 SVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANAL 291 >gi|302669432|ref|YP_003829392.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus B316] gi|302393905|gb|ADL32810.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus B316] Length = 292 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 153/279 (54%), Gaps = 18/279 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L+ + + KK GQNFL+D +L I ++G V+EIG G G+LTQ L A Sbjct: 11 KEVLAKFGMSAKKKFGQNFLIDSGVLDGIVSAAGVTKDDCVLEIGPGIGSLTQYLAE-SA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPY 127 KV+ +E D+ P+L D S++ N + +I +D LKVD E K +N +PI+++ANLPY Sbjct: 70 GKVVAVEIDKTLIPVLADTLSEYDN-VTVINEDVLKVDIEAIVKEYNGGNPIKVVANLPY 128 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ ++ P ES+T++ QKEV +R+ + YG LS+ G+ KA+ + Sbjct: 129 YITTPIIMKLF--ESGAPI-ESITVMVQKEVADRMAMGPGNKDYGSLSLAVGYYAKASEV 185 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL---- 241 D+ P F P P V S V+ + P C + + +I + +F +RRKTL SL Sbjct: 186 MDVPPSSFIPQPGVGSAVVKLTRYSEPAVCVQDEKYMFEIIRTSFNQRRKTLSNSLANNP 245 Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 R + L + GI+ R E LS+E F R+++IL Sbjct: 246 ALRVSRDQVQAALAEMGIDEKARGEILSLEQFARLSDIL 284 >gi|238650988|ref|YP_002916844.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic] gi|259494257|sp|C4K2J5|RSMA_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|238625086|gb|ACR47792.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic] Length = 301 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 155/304 (50%), Gaps = 41/304 (13%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107 + VIE D++ P+L +I +PN L II+ DALK+ Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120 Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 D + I + II+NLPY+IGT L+ W+ S+TL+ Q Sbjct: 121 REAKPITNRRANDIGESKAIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 KEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP+ Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPL 237 Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRI 297 Query: 273 TNIL 276 IL Sbjct: 298 AEIL 301 >gi|56416752|ref|YP_153826.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries] gi|222475116|ref|YP_002563532.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str. Florida] gi|255003096|ref|ZP_05278060.1| dimethyladenosine transferase [Anaplasma marginale str. Puerto Rico] gi|255004222|ref|ZP_05279023.1| dimethyladenosine transferase [Anaplasma marginale str. Virginia] gi|62900476|sp|Q5PAV9|RSMA_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807856|sp|B9KIG4|RSMA_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56387984|gb|AAV86571.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries] gi|222419253|gb|ACM49276.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str. Florida] Length = 270 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 97/261 (37%), Positives = 151/261 (57%), Gaps = 9/261 (3%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNF+LD ++ +KI +GS++G +IE+G G G +T+++L ++ IEKD++ Sbjct: 10 KSLGQNFILDPSMAEKIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAIEKDRRL 69 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 P+ K + ++PN I+ D L+++ E IS+P ++IANLPYNI LL + Sbjct: 70 SPMHKGLMQKYPN-YRYIEHDVLEINLETM--ISAPSKMIANLPYNISVILLLRMLK--- 123 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + +E LTL+FQKEV ER+ A+ + Y LSVL + D+ P F P PKV Sbjct: 124 YIHNFEKLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPGAFSPPPKVC 183 Query: 203 STVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNL 259 S+V++ P N P + K+ ++AFG +RKT+R +L E LL + I ++ Sbjct: 184 SSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALLAECRIPPSV 243 Query: 260 RAENLSIEDFCRITNILTDNQ 280 RAENLS+E C ++N L Q Sbjct: 244 RAENLSVEQLCAVSNFLQSRQ 264 >gi|268590578|ref|ZP_06124799.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131] gi|291313966|gb|EFE54419.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131] Length = 269 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 156/284 (54%), Gaps = 20/284 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D I+ I ++ L G +++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDQFIIDSIVDAMNPLPGQSIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119 + +G+R K+ V+E D+ L + Q ++L IIQ DA+ VDF + P+ Sbjct: 53 E---PVGSRIDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPL 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ T+ + + QKEV R+ A S +GRLSV+ Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTL 237 + + ++ P F P+PKV S ++ IPH NP P ++ L +IT +AF +RRKT+ Sbjct: 166 YYCNVVPVLEVPPTAFTPAPKVDSAIVRLIPHRENPYPVKDIKFLSRITTQAFNQRRKTI 225 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 R SL L L + GI+ + RAEN+S+E +C++ N L++ + Sbjct: 226 RNSLGDLFSVEELTELGIDLSTRAENISVEQYCKMANYLSNRSE 269 >gi|146309027|ref|YP_001189492.1| dimethyladenosine transferase [Pseudomonas mendocina ymp] gi|145577228|gb|ABP86760.1| dimethyladenosine transferase [Pseudomonas mendocina ymp] Length = 269 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/266 (35%), Positives = 147/266 (55%), Gaps = 7/266 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + DG ++EIG G G +T+ LL GA ++ Sbjct: 1 MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKDGERLLEIGPGQGAITEGLLGSGA-QL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D PIL+ +P R + Q DALK DF + +R++ NLPYNI T L Sbjct: 60 DVIELDLDLIPILQGKFGDNP-RFRLNQGDALKFDFARLEAAPGSLRVVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + P + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 119 IFHLLDN---APLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S ++ +PH + P P L+++ +EAF +RRKTLR +LK+L + Sbjct: 176 AFNPPPKVDSAIVRLVPHEVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261 >gi|227544731|ref|ZP_03974780.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A] gi|300909023|ref|ZP_07126486.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112] gi|227185271|gb|EEI65342.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A] gi|300894430|gb|EFK87788.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112] Length = 297 Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 158/283 (55%), Gaps = 22/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y I KK GQNFL DLN+LK I E++ VIEIG G G LT+ L A Sbjct: 14 RAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQ-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +V+ +E DQ P+LK++ S + N +++I D L+ + ++F + S PI+++ANL Sbjct: 73 GEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEFKDPSRPIKVVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +L N +++ P W ++ ++ QKEV +R+TA+ + YG L++ ++ +A Sbjct: 132 PYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYGELTLAIEYQMQAK 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242 + FD+S VF PSP V S ++ P NP+P +K+ + F RRK+L +L+ Sbjct: 189 IAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQ 248 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 + G++ +L Q I +R E L++E F + N L Sbjct: 249 SVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANAL 291 >gi|157828876|ref|YP_001495118.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|166221698|sp|A8GT85|RSMA_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157801357|gb|ABV76610.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 301 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 154/304 (50%), Gaps = 41/304 (13%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P + GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 2 LPSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN------------ 114 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120 Query: 115 -------------------ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 I + II+NLPY+IGT L+ W+ S+TL+ Q Sbjct: 121 REAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 KEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP+ Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPL 237 Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRI 297 Query: 273 TNIL 276 IL Sbjct: 298 AEIL 301 >gi|239947018|ref|ZP_04698771.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921294|gb|EER21318.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 303 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 152/298 (51%), Gaps = 40/298 (13%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L + Sbjct: 10 ASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQKKPESLT 69 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------------------------- 107 VIE D++ P+L +I +PN L II+ DALK+ Sbjct: 70 VIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKEREAKPITN 128 Query: 108 ------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 D + +I + II+NLPY+IGT L+ W+ ++TL+ QKEV ER Sbjct: 129 RRATSNDVGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LINNMTLMLQKEVVER 185 Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-E 220 I A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP L Sbjct: 186 ICAMPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALIN 245 Query: 221 SLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI IL Sbjct: 246 KVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLTPQDYLRIAEIL 303 >gi|153873941|ref|ZP_02002345.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS] gi|152069594|gb|EDN67654.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS] Length = 266 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 147/258 (56%), Gaps = 11/258 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQ+FL D I+++I + ++EIG G G LT LL G + VIE D+ Sbjct: 4 PRKRFGQHFLHDTGIIQRIITAIAPQKEQHLVEIGPGKGALTLPLLQQGF-ALDVIEFDR 62 Query: 81 QFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 LK +SSQ +L I+ DALK DF++ P+RI NLPYNI T LLF+ + Sbjct: 63 DLVEWLKQNTLSSQ---QLNILSADALKFDFKQLVTDKQPLRIFGNLPYNISTSLLFHLV 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + +T + QKEV +R+ A ++ +YGRLSV+ + + +FD+ P F P Sbjct: 120 HYNN---HIQDMTFMLQKEVVDRMIATPSTKNYGRLSVMLQYYCQINKLFDVDPEAFRPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV ST++ IPH++P + + L K+ AF ++RKTLR +LK + + + AGI+ Sbjct: 177 PKVNSTIVQLIPHVSPPVEVINDKQLSKMVALAFSQKRKTLRNTLKNVLDADAIQAAGID 236 Query: 257 TNLRAENLSIEDFCRITN 274 RAE L++ +F R+ N Sbjct: 237 PQARAETLTLAEFARLAN 254 >gi|165933603|ref|YP_001650392.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rickettsia rickettsii str. Iowa] gi|165908690|gb|ABY72986.1| dimethyladenosine transferase [Rickettsia rickettsii str. Iowa] Length = 315 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 154/304 (50%), Gaps = 41/304 (13%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P + GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 16 LPSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN------------ 114 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 76 QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 134 Query: 115 -------------------ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 I + II+NLPY+IGT L+ W+ S+TL+ Q Sbjct: 135 REAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 191 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 KEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP+ Sbjct: 192 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPL 251 Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 252 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRI 311 Query: 273 TNIL 276 IL Sbjct: 312 AEIL 315 >gi|327479273|gb|AEA82583.1| dimethyladenosine transferase [Pseudomonas stutzeri DSM 4166] Length = 264 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 148/267 (55%), Gaps = 7/267 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + G ++EIG G G LT+ LL GA + Sbjct: 1 MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLDSGA-HL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 V+E D PIL+ ++ N + Q DALK DF + + +RI+ NLPYNI T L Sbjct: 60 DVVELDLDLIPILQSRFAERSN-FALHQGDALKFDFAQLSREPASLRIVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + QKEV ER+ AQ +GRLS++ + + +F++ P Sbjct: 119 IFHLLE---HAGLIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK L + Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDGEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 AG++ +LR E L + F R+++ LT+ Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTE 262 >gi|15604515|ref|NP_221033.1| dimethyladenosine transferase [Rickettsia prowazekii str. Madrid E] gi|6225594|sp|O05952|RSMA_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2073482|emb|CAA72482.1| dimethyladenosine transferase [Rickettsia prowazekii] gi|3861209|emb|CAA15109.1| DIMETHYLADENOSINE TRANSFERASE (ksgA) [Rickettsia prowazekii] gi|292572303|gb|ADE30218.1| Dimethyladenosine transferase [Rickettsia prowazekii Rp22] Length = 268 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/270 (37%), Positives = 151/270 (55%), Gaps = 12/270 (4%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I+ H +KI P K GQNF+ D ++ KI +S L+ VIEIG G G LT+ +L Sbjct: 2 LPSIVKHATSHKINPLKKHGQNFIFDSSLCDKIIRASNVLENSNVIEIGPGIGGLTRSIL 61 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + + VIE D++ P+L +I +PN L II+ D LK++ I + +I+NLP Sbjct: 62 QKNPKSLTVIEIDERCIPLLNEIQEYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLP 118 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y+IGT L+ + ++TL+ QKEV ERI A ++ YGRLSV+ K Sbjct: 119 YHIGTELVIRLLKEVK---LITNMTLMLQKEVVERICAIPSTKAYGRLSVICQILAKVEK 175 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL- 244 F+++P F+P PKV S ++ IP NP L +++IT+ F RRK ++ SL+ L Sbjct: 176 CFNVAPTAFYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLI 235 Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +L Q I N RAENL+ +D+ RI Sbjct: 236 PNIHEVLTQLKINCNDRAENLTPKDYLRIA 265 >gi|229587025|ref|YP_002845526.1| dimethyladenosine transferase [Rickettsia africae ESF-5] gi|259494256|sp|C3PPC3|RSMA_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|228022075|gb|ACP53783.1| Dimethyladenosine transferase [Rickettsia africae ESF-5] Length = 301 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 155/304 (50%), Gaps = 41/304 (13%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRAIL 61 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107 + VIE D++ P+L +I +PN L II+ DALK+ Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120 Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 D + +I + II+NLPY+IGT L+ W+ S+TL+ Q Sbjct: 121 REAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAQ---LITSMTLMLQ 177 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-P 214 KEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP N P Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIVKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSP 237 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272 + +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRI 297 Query: 273 TNIL 276 IL Sbjct: 298 AEIL 301 >gi|27151589|sp|Q92GV0|RSMA_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 301 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 154/304 (50%), Gaps = 41/304 (13%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107 + VIE D + P+L +I +PN L II+ DALK+ Sbjct: 62 QKNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKK 120 Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 D + +I + II+NLPY+IGT L+ W+ S+TL+ Q Sbjct: 121 REVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 KEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPP 237 Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRI 272 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRI 297 Query: 273 TNIL 276 IL Sbjct: 298 AEIL 301 >gi|157964820|ref|YP_001499644.1| dimethyladenosine transferase [Rickettsia massiliae MTU5] gi|157844596|gb|ABV85097.1| Dimethyladenosine transferase [Rickettsia massiliae MTU5] Length = 332 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 154/306 (50%), Gaps = 43/306 (14%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 31 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 90 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107 + VIE D++ P+L +I +PN L II+ DALK+ Sbjct: 91 QKNPESLTVIETDERCLPLLNEIKECYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKK 149 Query: 108 --------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 D + +I + II+NLPY+IGT L+ W+ S+TL+ Sbjct: 150 LEVKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLM 206 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 QKEV ERI A ++ YGRLSV+ K FD+ P F+P PKV S ++ IP N Sbjct: 207 LQKEVVERICAMPSTKAYGRLSVICQLIAKVEKCFDVEPTAFYPPPKVYSAIVKLIPLEN 266 Query: 214 PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFC 270 P L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ Sbjct: 267 PPSIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYL 326 Query: 271 RITNIL 276 RI IL Sbjct: 327 RIAEIL 332 >gi|258542093|ref|YP_003187526.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-01] gi|256633171|dbj|BAH99146.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-01] gi|256636228|dbj|BAI02197.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-03] gi|256639283|dbj|BAI05245.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-07] gi|256642337|dbj|BAI08292.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-22] gi|256645392|dbj|BAI11340.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-26] gi|256648447|dbj|BAI14388.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-32] gi|256651500|dbj|BAI17434.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654491|dbj|BAI20418.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-12] Length = 214 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 6/205 (2%) Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +E D + ++++++ +PNRL++++ DALK D + +P +IIANLPYN+ Sbjct: 6 AESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTEL--CPAPRQIIANLPYNV 63 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T LL W+ WE LTL+FQ EV ERI A NS HYGRL+VL W ++ Sbjct: 64 ATPLLIGWLRQGN---AWERLTLMFQLEVAERICAAPNSEHYGRLAVLAQWCADCAIVMK 120 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + P F P P V S V PH P P ++++++T AFG+RRK LR +LK L G Sbjct: 121 LPPGAFSPPPAVWSAVASITPHAQQPEPALFKAMERVTAAAFGQRRKMLRGALKGLNGYK 180 Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273 LL A I+ RAE L + +F R+ Sbjct: 181 LLAAADIDGTRRAETLDVAEFDRLA 205 >gi|146281120|ref|YP_001171273.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501] gi|145569325|gb|ABP78431.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501] Length = 264 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 148/267 (55%), Gaps = 7/267 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 1 MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLHSGA-QL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 V+E D PIL+ + N + Q DALK DF + + +RI+ NLPYNI T L Sbjct: 60 DVVELDLDLIPILQAKFAGREN-FNLNQGDALKFDFSRLSQEPASLRIVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + QKEV ER+ AQ +GRLS++ + + +F++ P Sbjct: 119 IFHLLE---HAQLIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK L + Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDAEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 AG++ +LR E L + F R+++ LT+ Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTE 262 >gi|253689996|ref|YP_003019186.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494254|sp|C6DEY6|RSMA_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|251756574|gb|ACT14650.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 272 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 150/288 (52%), Gaps = 32/288 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQF------FPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113 +G R + VIE D+ P LKD +L IIQ DA+ +DF Sbjct: 53 A---PVGERMDRFTVIELDRDLAARLETHPTLKD-------KLTIIQQDAMTIDFAALAE 102 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS +GR Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQSIRDMHFMLQKEVVNRLVAGPNSKAFGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 LSV+ + + + ++ P F P+PKV S V+ +PH P P + L +IT EAF Sbjct: 160 LSVMAQYYCQVIPVLEVPPEAFKPAPKVDSAVVRLVPHTEIPYPVSDIRVLSRITTEAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR SL L ++L + GI+ RAEN+S+E +CR+ N L+++ Sbjct: 220 QRRKTLRNSLGNLFTPDVLAELGIDATSRAENVSVEQYCRLANWLSEH 267 >gi|34581355|ref|ZP_00142835.1| dimethyladenosine transferase [Rickettsia sibirica 246] gi|28262740|gb|EAA26244.1| dimethyladenosine transferase [Rickettsia sibirica 246] Length = 301 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 155/304 (50%), Gaps = 41/304 (13%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107 + VIE D++ P+L +I +PN L II+ DALK+ Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120 Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 D + +I + II+NLPY+IGT L+ W+ S+TL+ Q Sbjct: 121 REAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-P 214 KEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP N P Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSP 237 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272 + +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRI 297 Query: 273 TNIL 276 IL Sbjct: 298 AEIL 301 >gi|15892945|ref|NP_360659.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7] gi|15620139|gb|AAL03560.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7] Length = 315 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 154/304 (50%), Gaps = 41/304 (13%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L +I H +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 16 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107 + VIE D + P+L +I +PN L II+ DALK+ Sbjct: 76 QKNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKK 134 Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 D + +I + II+NLPY+IGT L+ W+ S+TL+ Q Sbjct: 135 REVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 191 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 KEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP Sbjct: 192 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPP 251 Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRI 272 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 252 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRI 311 Query: 273 TNIL 276 IL Sbjct: 312 AEIL 315 >gi|88608711|ref|YP_506251.1| dimethyladenosine transferase [Neorickettsia sennetsu str. Miyayama] gi|119365038|sp|Q2GE45|RSMA_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|88600880|gb|ABD46348.1| dimethyladenosine transferase [Neorickettsia sennetsu str. Miyayama] Length = 262 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 140/258 (54%), Gaps = 10/258 (3%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+F+ D +L KI +++ S+ G + EIGAG G L+ +L +I +EKD++F Sbjct: 6 KLLGQHFIYDREVLDKIIDAATSVKGKHIFEIGAGSGTLSAAILLREPASLISVEKDKRF 65 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L + +Q+ N I DAL + F + IIANLPYNI T LL W++ Sbjct: 66 SESLSSLMAQYQNYKYTI-GDALLIRLSSLFK-QEKVTIIANLPYNIATHLLLGWMNELE 123 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + L+FQKEV +RI AQ S +YG LSVL KA F ++P VF P P+VT Sbjct: 124 Q---VREMVLMFQKEVADRICAQPKSKNYGALSVLVQLECKAESQFALAPEVFTPPPRVT 180 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIET 257 STV+ P N P L+KI E F +RRK +++SL R+ + + L Q G Sbjct: 181 STVLKLTPLKNKWPRNKPVLEKILTEGFSQRRKMIKKSLSRIFKDSEALHSALAQVGASP 240 Query: 258 NLRAENLSIEDFCRITNI 275 +R E L+ E CR++ I Sbjct: 241 TMRIEELNPEQLCRLSCI 258 >gi|152987663|ref|YP_001346131.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7] gi|150962821|gb|ABR84846.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7] Length = 268 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/266 (35%), Positives = 141/266 (53%), Gaps = 7/266 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + VI Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E DQ P+LK P R + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDQDLIPLLKLKFGLEP-RFSLHQGDALKFDFASLVESDEKLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P E + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + A Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAA 239 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 ++ LR E L + F R+ N L + Q Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAELQ 265 >gi|149907524|ref|ZP_01896271.1| dimethyladenosine transferase [Moritella sp. PE36] gi|149809194|gb|EDM69123.1| dimethyladenosine transferase [Moritella sp. PE36] Length = 272 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 155/282 (54%), Gaps = 21/282 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H KK GQNFL D ++ +I S G +IEIG G G LT Sbjct: 1 MNDKVH-----LGH---TAKKRFGQNFLHDAYVIGQIVASINPRKGENLIEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + K+ V+E D+ L + QHP +LEI Q DA++ DF++ + + Sbjct: 53 EPVADC-LDKMTVVELDRD----LAERLEQHPVLSKKLEIHQADAMRFDFKQLIKPNMKM 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI NLPYNI T L+F+ + + + + QKEV +R+ A N+ YGRL+V+T Sbjct: 108 RIFGNLPYNISTPLMFHLFE---FHEDIQDMHFMLQKEVVQRLAASHNTKSYGRLTVMTQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTL 237 + + T + ++ P F P+PKV S V+ PH + P P L+ L + + AF +RRKT+ Sbjct: 165 YYCRVTPVLEVGPEAFRPAPKVDSAVVRLEPHTVLPHPAKSLKVLNHVVRNAFNQRRKTI 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R SLK++ + + GI +LR ENL++E++ I N +TDN Sbjct: 225 RNSLKKVISVDDIAALGINVSLRPENLTLENYVTIANFVTDN 266 >gi|148543450|ref|YP_001270820.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016] gi|184152859|ref|YP_001841200.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112] gi|227363600|ref|ZP_03847717.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3] gi|325681794|ref|ZP_08161313.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A] gi|166987695|sp|A5VI09|RSMA_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732591|sp|B2G5I8|RSMA_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|148530484|gb|ABQ82483.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016] gi|183224203|dbj|BAG24720.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112] gi|227071396|gb|EEI09702.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3] gi|324978885|gb|EGC15833.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A] Length = 297 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 159/283 (56%), Gaps = 22/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y I KK GQNFL DLN+LK I E++ VIEIG G G LT+ L A Sbjct: 14 RAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQ-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +V+ +E DQ P+LK++ S + + +++I D L+ + ++F + S PI+++ANL Sbjct: 73 GEVLALEIDQDLIPVLKEVLSPY-DDVKVINQDVLQANLPELIKKEFKDPSRPIKVVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +L N +++ P W ++ ++ QKEV +R+TA+ + YG L++ ++ +A Sbjct: 132 PYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYGALTLAIEYQMQAK 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242 + FD+S VF P+P V S ++ P NP+P +K+ + F RRK+L +L+ Sbjct: 189 IAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQ 248 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 + G++ +L+Q I +R E L++E F + N L Sbjct: 249 SVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANAL 291 >gi|226327128|ref|ZP_03802646.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198] gi|225204346|gb|EEG86700.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198] Length = 272 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 108/291 (37%), Positives = 154/291 (52%), Gaps = 34/291 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D I++ I ES G ++EIG G G +T Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDSYIIESIVESIYPQPGQAIVEIGPGLGAIT 52 Query: 63 QMLLTLGAR--KVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113 + +GAR K+ V+E D+ + P LKD +L IIQ DA+ +DF + Sbjct: 53 E---PVGARMDKMTVVEIDRDLAARLEVHPTLKD-------KLTIIQQDAMTIDFAQLAK 102 Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 P+R+ NLPYNI T L+F+ S AD +T + QKEV R+ A S YG Sbjct: 103 ERQQPLRVFGNLPYNISTPLMFHLFSFADAI----SDMTFMLQKEVVNRLVAGHGSKTYG 158 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAF 230 RLSV+ + + + ++ P F P+PKV S V+ IP+ P P + L +IT +AF Sbjct: 159 RLSVMAQYYCQIIPVLEVPPTSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITAQAF 218 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +RRKTLR SL L + I+ RAEN+S+E +C++ N L+ QD Sbjct: 219 NQRRKTLRNSLGGLLTAEDMIALDIDPTARAENISVEQYCKVANWLSQKQD 269 >gi|262371641|ref|ZP_06064920.1| dimethyladenosine transferase [Acinetobacter junii SH205] gi|262311666|gb|EEY92751.1| dimethyladenosine transferase [Acinetobacter junii SH205] Length = 270 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 139/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRAGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L HP RL I++ DALK DF + F P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPG-RVPHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +RITA+ N+ YGRLSV+ + K T +F++ P F P PKV Sbjct: 135 DK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V P+ PI E +L ++ F +RRKTLR SLK + E+ +AG++ Sbjct: 192 TSAVFRLEPYETKPIIAKNEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E LS+ DF +++ Sbjct: 252 RPETLSLADFVALSD 266 >gi|212711197|ref|ZP_03319325.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM 30120] gi|212686365|gb|EEB45893.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM 30120] Length = 269 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/281 (37%), Positives = 150/281 (53%), Gaps = 20/281 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D I+ I ++ G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLTDQFIIDSIVDAMHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119 + +G+R K+ V+E D+ L + Q ++L IIQ DA+ VDF + PI Sbjct: 53 E---PVGSRMDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPI 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ T+ + + QKEV R+ A S YGRLSV+ Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNQISDMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTL 237 + + ++ P F P PKV S V+ IPH NP P ++ L +IT +AF +RRKT+ Sbjct: 166 YYCNVVPVLEVPPTAFAPPPKVDSAVVRLIPHKENPYPVKDIKVLSRITTQAFNQRRKTI 225 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R SL L L + GI+ RAEN+S+E +C++ N L + Sbjct: 226 RNSLGDLFSVEQLTELGIDPGTRAENISVEHYCKMANYLCN 266 >gi|56476032|ref|YP_157621.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1] gi|62900475|sp|Q5P7J1|RSMA_AROAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56312075|emb|CAI06720.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1] Length = 265 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/263 (36%), Positives = 146/263 (55%), Gaps = 21/263 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL D NI++KI ++ + G TV+EIG G G +T L+ LG V+ I++D Sbjct: 7 RKRFGQNFLSDPNIIRKIIDAIHPVPGETVVEIGPGLGAMTDPLVERLGHLHVVEIDRDL 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 I + P RL I + DALK DF + +P+R++ NLPYNI T LLF+ Sbjct: 67 ----IARLHERYSPERLTIHEGDALKFDFA---TLGAPLRVVGNLPYNISTPLLFHLAE- 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + +T + QKEV R+ A+ + YGRLSV+ +R + +FD+ P F P+PK Sbjct: 119 --FAARVRDMTFMLQKEVVMRMVAEPGTEDYGRLSVMLQYRFRMGRLFDVPPGAFRPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCCLES------LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 VTS+++ + P+P + L+++ AFG+RRKTLR +L+ E G Sbjct: 177 VTSSIVRMV----PLPAEQRTAKDEALLERVVAAAFGQRRKTLRNTLREWLDEADFPALG 232 Query: 255 IETNLRAENLSIEDFCRITNILT 277 I+ LR E L++ D+ ITN + Sbjct: 233 IDPGLRGERLTVADYVAITNYIA 255 >gi|183597821|ref|ZP_02959314.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827] gi|188022577|gb|EDU60617.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827] Length = 269 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/280 (37%), Positives = 150/280 (53%), Gaps = 20/280 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D I+ I ++ G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLTDQFIIDSIVDAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119 + +G+R K+ V+E D+ L + Q ++L IIQ DA+ VDF + P+ Sbjct: 53 E---PVGSRMDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPL 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ T+ + + QKEV R+ A S YGRLSV+ Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNSIADMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTL 237 + + + ++ P F P PKV S V+ IPH NP P ++ L +IT +AF +RRKTL Sbjct: 166 YYCQVVPVLEVPPTAFAPPPKVDSAVVRLIPHRENPYPLRDIKMLSRITTQAFNQRRKTL 225 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R SL L L + GI+ RAEN+S+E +C++ N L Sbjct: 226 RNSLGDLLNVEQLTELGIDPGTRAENISVEAYCKMANYLA 265 >gi|197286180|ref|YP_002152052.1| dimethyladenosine transferase [Proteus mirabilis HI4320] gi|227357300|ref|ZP_03841657.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC 29906] gi|226732611|sp|B4F2I2|RSMA_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194683667|emb|CAR44618.1| dimethyladenosine transferase [Proteus mirabilis HI4320] gi|227162563|gb|EEI47552.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC 29906] Length = 272 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 110/293 (37%), Positives = 153/293 (52%), Gaps = 34/293 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D I++ I ES G VIEIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDSYIIESIVESIYPQPGEAVIEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113 + +G R K+ V+E D+ + P LKD +L IIQ DA+ +DF + Sbjct: 53 E---PVGERMDKMTVVEIDRDLAARLEVHPTLKD-------KLTIIQQDAMTIDFAQLAK 102 Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 P+R+ NLPYNI T L+F+ S AD +T + QKEV R+ A S YG Sbjct: 103 ERQQPLRVFGNLPYNISTPLMFHLFSFADAI----SDMTFMLQKEVVNRLVASHGSKTYG 158 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAF 230 RLSV+ + + + ++ P F P+PKV S V+ IP+ P P + L +IT +AF Sbjct: 159 RLSVMAQYHCQVIPIIEVPPSSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITSQAF 218 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 +RRKTLR SL L + I+ RAEN+S+E +C++ N L+ Q A Sbjct: 219 NQRRKTLRNSLGGLLTAEDMLALDIDPTARAENISVEQYCKVANWLSSQQQHA 271 >gi|238918639|ref|YP_002932153.1| dimethyladenosine transferase [Edwardsiella ictaluri 93-146] gi|238868207|gb|ACR67918.1| dimethyladenosine transferase, putative [Edwardsiella ictaluri 93-146] Length = 267 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 143/270 (52%), Gaps = 14/270 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL D ++ I + L G V+EIG G G LT+ + K+ V Sbjct: 2 HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVAD-RMDKMTV 60 Query: 76 IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGT 131 +E D+ L + S HP +L I Q DA+ VDF E P+R+ NLPYNI T Sbjct: 61 VELDRD----LAERLSTHPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNIST 116 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F+ S + + + QKEV R+ A +S YGRLSV+ + + + ++ Sbjct: 117 PLMFHLFS---YASAISDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVVPVLEVP 173 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P+PKV S V+ IPH P P + L +IT EAF +RRKT+R SL L + Sbjct: 174 PSAFRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSADQ 233 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ RAE LS+ D+CR+ N L ++ Sbjct: 234 LSALGIDPARRAETLSVADYCRLANWLCEH 263 >gi|157368969|ref|YP_001476958.1| dimethyladenosine transferase [Serratia proteamaculans 568] gi|166987697|sp|A8G9P0|RSMA_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157320733|gb|ABV39830.1| dimethyladenosine transferase [Serratia proteamaculans 568] Length = 272 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/285 (37%), Positives = 153/285 (53%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNKVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +GAR ++ VIE D+ L + HP ++L I Q DA+ V+F E Sbjct: 53 E---PVGARMDRMTVIELDRDLAARLAN----HPQLKDKLTIHQQDAMTVNFAEMAEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ +PHL NP P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTSFTPAPKVDSAVVRLVPHLVNPNPVGDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ LRAEN+S+ +C++ N L+ N Sbjct: 223 KTVRNSLGDLFTPEQLTELGIDPILRAENISVAQYCKLANWLSAN 267 >gi|107099578|ref|ZP_01363496.1| hypothetical protein PaerPA_01000591 [Pseudomonas aeruginosa PACS2] gi|254243686|ref|ZP_04937008.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 2192] gi|126197064|gb|EAZ61127.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 2192] Length = 268 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 142/264 (53%), Gaps = 7/264 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + VI Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + P E + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLE---YAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + A Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ LR E L + F R+ N L + Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAE 263 >gi|254455962|ref|ZP_05069391.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. HTCC7211] gi|207082964|gb|EDZ60390.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. HTCC7211] Length = 261 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 150/263 (57%), Gaps = 19/263 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK +GQNFL+D NIL+KI D T++E+G G GNLT +L +K+ V+EK Sbjct: 2 IKAKKSLGQNFLVDRNILEKITNIIQITDE-TILEVGPGTGNLTSFILKKKPKKIFVVEK 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ + + ++L II DD LK++ F S + + NLPYNI T +L WI Sbjct: 61 DEK---LANHLEETFKDQLTIINDDILKINESSLF--ESKVTVFGNLPYNISTEILSKWI 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + ++ +L L+FQKEV +RI A+ ++ +YGRLS+++ W+ + DI P F P Sbjct: 116 TNSSKDLWFNNLILMFQKEVADRIIAKFDTSNYGRLSIISNWKLNVEKICDIKPDCFSPK 175 Query: 199 PKVTSTVIHFIPH------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250 PK+ S+++ F P NP ++L+K+T+ F RRK +++ +L G + +L Sbjct: 176 PKIDSSLLFFSPKKDFFKIKNP-----KNLEKVTRVFFNHRRKMIKKPFNQLFNGNQKVL 230 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 + I NLR +NL + ++T Sbjct: 231 DELNINLNLRPQNLDFNTYYKLT 253 >gi|270263922|ref|ZP_06192190.1| dimethyladenosine transferase [Serratia odorifera 4Rx13] gi|270042115|gb|EFA15211.1| dimethyladenosine transferase [Serratia odorifera 4Rx13] Length = 272 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 153/285 (53%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNKVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +GAR ++ VIE D+ L + HP ++L I Q DA+ V+F E Sbjct: 53 E---PVGARMDRMTVIELDRDLAARLAN----HPQLKDKLTIHQQDAMTVNFAEMAEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ +PH +NP P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTSFTPAPKVDSAVVRLVPHQVNPNPVGDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + G++ LRAEN+S+ +C++ N L+ N Sbjct: 223 KTVRNSLGDLFTPEQLTELGVDPTLRAENISVAQYCKLANWLSAN 267 >gi|242238054|ref|YP_002986235.1| dimethyladenosine transferase [Dickeya dadantii Ech703] gi|242130111|gb|ACS84413.1| dimethyladenosine transferase [Dickeya dadantii Ech703] Length = 272 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 150/288 (52%), Gaps = 32/288 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIYPQSGQALVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQF------FPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 + +G R + V+E D+ P LKD +L IIQ DA+ VDF Sbjct: 53 ---VPVGERIDRFTVVELDRDLAARLETHPTLKD-------KLTIIQQDAMTVDFTALAQ 102 Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGR Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTHSIRDMHFMLQKEVVNRLVAGPNSKAYGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFG 231 LSV+ + + + ++ P F P+PKV S V+ +PH +P P L +IT EAF Sbjct: 160 LSVMAQYYCQVIPVLEVPPSAFKPAPKVDSAVVRLVPHTTSPYPTVDTRMLGRITTEAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR SL L L + GI+ N RAEN+++E +C++ N LT++ Sbjct: 220 QRRKTLRNSLGNLFTPEQLTEQGIDPNARAENVTVEQYCQLANWLTEH 267 >gi|192361991|ref|YP_001981369.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107] gi|190688156|gb|ACE85834.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107] Length = 287 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 93/259 (35%), Positives = 143/259 (55%), Gaps = 7/259 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL+D I++ I + V+EIG G G +T+ LL + VIE D+ Sbjct: 20 RKRFGQNFLVDHGIIRDIVRAVHPQKTDVVVEIGPGKGAITE-LLADACDNLSVIELDRD 78 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P LK +HPN ++ Q DAL+ DF + P+RI+ NLPYNI T L+F+ + Sbjct: 79 LVPWLKVKFEKHPN-FQLFQADALRFDFRQLIKPGQPLRIVGNLPYNISTPLIFHLLGYA 137 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +R+ A+ S YGRL ++ + +F++ P F P PKV Sbjct: 138 NQ---VKDMHFMLQKEVVKRMAAEPGSGAYGRLGIMVQYFCAVENLFEVPPTSFDPPPKV 194 Query: 202 TSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +PH L + L++L+ + AF +RRKTLR SLK L L ++ NL Sbjct: 195 DSAIVRLVPHQQLPYLANNLKTLETLVNVAFQQRRKTLRNSLKSLLSMAQLDSLPVDLNL 254 Query: 260 RAENLSIEDFCRITNILTD 278 R EN+S+ ++ +I+N+L D Sbjct: 255 RPENISLAEYVQISNLLGD 273 >gi|269137958|ref|YP_003294658.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella tarda EIB202] gi|267983618|gb|ACY83447.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella tarda EIB202] gi|304558006|gb|ADM40670.1| Dimethyladenosine transferase [Edwardsiella tarda FL6-60] Length = 267 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 102/270 (37%), Positives = 143/270 (52%), Gaps = 14/270 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL D ++ I + L G V+EIG G G LT+ + K+ V Sbjct: 2 HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVAD-RMDKMTV 60 Query: 76 IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGT 131 IE D+ L + S HP +L I Q DA+ VDF E P+R+ NLPYNI T Sbjct: 61 IELDRD----LAERLSTHPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNIST 116 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F+ S + + + QKEV R+ A +S YGRLSV+ + + + ++ Sbjct: 117 PLMFHLFS---YASAIGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVP 173 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P+PKV S V+ IPH P P + L +IT EAF +RRKT+R SL L + Sbjct: 174 PSAFRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTVRNSLGHLFSADQ 233 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ RAE LS+ D+CR+ N L ++ Sbjct: 234 LSALGIDPARRAETLSVADYCRLANWLCEH 263 >gi|226954480|ref|ZP_03824944.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Acinetobacter sp. ATCC 27244] gi|294651496|ref|ZP_06728809.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC 19194] gi|226834829|gb|EEH67212.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Acinetobacter sp. ATCC 27244] gi|292822646|gb|EFF81536.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC 19194] Length = 270 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 138/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L HP RL II+ DALK DF + F P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPG-RVPHPERLTIIEADALKYDFTQLFQDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P PKV Sbjct: 135 DK---VKDMHFMLQKEVVDRITAVPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V P+ PI E +L ++ F +RRKTLR SLK + ++ +AG++ Sbjct: 192 TSAVFRLEPYETKPIVAKDEKALARLVSHVFTQRRKTLRNSLKGMLADDGFEKAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E LS+ DF +++ Sbjct: 252 RPETLSLADFVALSD 266 >gi|157804052|ref|YP_001492601.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel] gi|166221697|sp|A8EZN3|RSMA_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157785315|gb|ABV73816.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel] Length = 270 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 9/260 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + I P K GQNF+ D ++ KI S + V+EIG G G LT+ +L + VI Sbjct: 12 HHINPLKKHGQNFIFDSSLCHKIVRVSNLEENSRVLEIGPGSGGLTRSILQKNPESLTVI 71 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D++F P+L +I +PN L II+ DALK++ + II+NLPY+IGT L+ Sbjct: 72 ETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDLG--YDKVTIISNLPYHIGTELVIR 128 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 W+ S+TL+ QKE+ ERI A ++ YGRLSV+ K F+++P F+ Sbjct: 129 WLKEAR---LITSMTLMLQKELVERICAMPSTKAYGRLSVICQLIAKVEKCFEVAPTAFY 185 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253 P PKV S ++ P N P + +++IT+ AF RRK ++ SLK +L Q Sbjct: 186 PPPKVYSAIVKLTPLENLPSIALITKVEQITKLAFAGRRKMIKSSLKNFVPVKNEVLTQL 245 Query: 254 GIETNLRAENLSIEDFCRIT 273 I N RAENL+ +D+ I Sbjct: 246 NINDNYRAENLTPQDYLMIA 265 >gi|88810560|ref|ZP_01125817.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231] gi|88792190|gb|EAR23300.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231] Length = 271 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 139/259 (53%), Gaps = 8/259 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D +IL ++ +S G IEIG+G G LT+ LL AR ++ IE D+ Sbjct: 7 RRRFGQNFLHDPSILHRMVDSIDPRPGQCCIEIGSGLGALTRPLLER-ARALVAIELDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ LEIIQ DAL +DF F +R+I NLPYNI T LLF+ Sbjct: 66 LIEPLRRCCDGA-GELEIIQADALGLDFACFRQGPEKLRVIGNLPYNIATPLLFHVTG-- 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + E L QKEV ER+ A YGRLSV+ +R + +FD+ P+ F P PKV Sbjct: 123 -FAEHLEDAHFLLQKEVVERMAAGAGQASYGRLSVMIQYRCRVEPLFDVLPNAFRPVPKV 181 Query: 202 TSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 TS+ + P P + L ++ AFG+RRKTLR +L+ + E + AGIE + Sbjct: 182 TSSWVRLTPLSRPPRGTWDDEPRLAEVVARAFGQRRKTLRNALRGMISEQQIKAAGIEPS 241 Query: 259 LRAENLSIEDFCRITNILT 277 RAE + ++ + R+ ++ Sbjct: 242 ARAETIDLDHYLRLAEVMA 260 >gi|156124974|gb|ABU50801.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Acinetobacter venetianus] Length = 270 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 138/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L HP RL I++ DALK DF + F P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPG-RVPHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P PKV Sbjct: 135 DK---VKDMHFMLQKEVVDRITATPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V P+ PI E +L ++ F +RRKTLR SLK + E+ +AG++ Sbjct: 192 TSAVFRLEPYETKPIVAKDEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E LS+ DF +++ Sbjct: 252 RPETLSLADFVALSD 266 >gi|240949660|ref|ZP_04753995.1| dimethyladenosine transferase [Actinobacillus minor NM305] gi|240295918|gb|EER46594.1| dimethyladenosine transferase [Actinobacillus minor NM305] Length = 289 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/269 (35%), Positives = 149/269 (55%), Gaps = 20/269 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+N++ I + +G ++EIG G G LT+ + L K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNVIHGIVSAINPRNGQYLLEIGPGLGALTEPVAEL-VDKLTVVELDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133 L+ HP ++L II+ DAL+ +F ++F + +R+ NLPYNI T L Sbjct: 74 LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLDLKENEGVRVFGNLPYNISTPL 129 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F P+PKV S V+ +PH IP ++ L ++T +AF +RRKTLR +L L L Sbjct: 187 AFKPAPKVDSAVVRLVPH-KQIPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQL 245 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 GI+ N RAENLSI D+ R+ N L DN Sbjct: 246 EALGIDLNARAENLSIADYARLANWLCDN 274 >gi|262369199|ref|ZP_06062527.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Acinetobacter johnsonii SH046] gi|262315267|gb|EEY96306.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Acinetobacter johnsonii SH046] Length = 270 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/255 (38%), Positives = 136/255 (53%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVAPRSGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L HP RL II+ DALK DF F P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPG-RVPHPERLTIIETDALKYDFTNLFEDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +RITA NS YGRLSV+ + K T +F++ P F P PKV Sbjct: 135 DK---VKDMHFMLQKEVVDRITASPNSKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V P+ + PI E +L ++ F +RRKTLR SLK + E+ QAG++ Sbjct: 192 TSAVFRLEPYAVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEDGFEQAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ F + + Sbjct: 252 RPETLTLAQFVALAD 266 >gi|123440993|ref|YP_001004982.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166221715|sp|A1JJF4|RSMA_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122087954|emb|CAL10742.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 272 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 155/283 (54%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS 117 + + AR + VIE D+ L D + HP ++L I Q+DA+K++F + ++ Sbjct: 53 E---PVAARMDHMTVIELDRD----LADRLASHPQLKDKLTIHQEDAMKINFSELAELAG 105 Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ IPH+N P P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 223 KTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|330505265|ref|YP_004382134.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01] gi|328919551|gb|AEB60382.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01] Length = 269 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 146/266 (54%), Gaps = 7/266 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + + ++EIG G G +T+ LL GA ++ Sbjct: 1 MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKEDERLLEIGPGQGAITEGLLGSGA-QL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D PIL++ +P R + Q DALK DF + +R++ NLPYNI T L Sbjct: 60 DVIELDLDLIPILQNKFGANP-RFRLNQGDALKFDFARLEAAPRSLRVVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + P + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 119 IFHLLDN---APLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK+L + Sbjct: 176 AFNPPPKVDSAIVRLVPHETLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261 >gi|85711795|ref|ZP_01042851.1| dimethyladenosine transferase [Idiomarina baltica OS145] gi|85694410|gb|EAQ32352.1| dimethyladenosine transferase [Idiomarina baltica OS145] Length = 269 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/275 (34%), Positives = 155/275 (56%), Gaps = 16/275 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT L H +K GQNFL D +I++ I ++ G ++EIG G LT+ + Sbjct: 3 KTHLGHRA---RKRFGQNFLNDEHIIESIVDAIHPQPGENLVEIGPGLAALTEPVAE-RC 58 Query: 71 RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 +++ V+E D+ L D HP L++I+ DA+K+DF+ F + +R+ NLPY Sbjct: 59 QQLRVVELDRD----LADRLETHPFLSQHLDVIRGDAMKIDFKAFASPEQKLRVFGNLPY 114 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T L+F+ + + + E + + QKEV +R+TA+ S YGR++V R + + Sbjct: 115 NISTPLIFHLLK---FSDYVEDMHFMLQKEVVDRLTAEPGSKTYGRITVSVQQRCEVQKV 171 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P PKV S V+ P++ +P P ++ L+ + AF +RRKT++ +LK+L Sbjct: 172 LDVPPEAFTPPPKVESAVVRLRPYVKSPTPVKDVQQLQSLCLTAFNQRRKTIKNNLKKLI 231 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + L GI + R E L++ D+CRI++ LTDNQ Sbjct: 232 DDTQLEALGINPSARPETLTVADYCRISDWLTDNQ 266 >gi|254429167|ref|ZP_05042874.1| dimethyladenosine transferase [Alcanivorax sp. DG881] gi|196195336|gb|EDX90295.1| dimethyladenosine transferase [Alcanivorax sp. DG881] Length = 270 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 144/263 (54%), Gaps = 10/263 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D N++ ++ + G G T++EIG G G LT LL + V+E D+ Sbjct: 7 RKRFGQHFLHDRNLVDRMIRTLGLQAGDTLVEIGPGRGALTYPLLE-EIPHLHVVELDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 +L+ ++ P+RL I + DAL+ DF P+R+I NLPYNI T L+F+ ++ A Sbjct: 66 LIALLRQENT--PDRLSIHESDALRFDFRALKPADKPLRVIGNLPYNISTPLIFHLLAQA 123 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D +T + QKEV ER+TA + +GRLS++ + +A +F + P F P P+ Sbjct: 124 DAI----SDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPPPR 179 Query: 201 VTSTVIHFIPHLNPI-PCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ IPH +P P E L+K+ +AF +RRK +R LK GI+ Sbjct: 180 VDSAVVRLIPHASPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFEALGIDAG 239 Query: 259 LRAENLSIEDFCRITNILTDNQD 281 LR + LS+ D+ + NI N D Sbjct: 240 LRPDQLSVADYVALANISRPNAD 262 >gi|53805073|ref|YP_113120.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath] gi|62900497|sp|Q60B77|RSMA_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53758834|gb|AAU93125.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath] Length = 257 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 139/258 (53%), Gaps = 7/258 (2%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P+K GQNFL D ++++I + G ++EIG G G LT+ LL GA + IE D Sbjct: 4 VPRKRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGA-CLEAIELD 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + LK + RL I + DA+K D + +R++ NLPYNI T LLF+ Sbjct: 63 RDLVAALKRRFAG-VGRLRIHEGDAMKFDL-RTIATGERLRVVGNLPYNISTPLLFHLFD 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 E + + QKEV +R+ A HYGRLSV+ +A +FD+ P F P P Sbjct: 121 ---QIDVIEDMHFMLQKEVVDRLCAGAGDDHYGRLSVMAALYCQAQHLFDVGPECFHPQP 177 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S V+ +PH + P ++ + + AFG+RRKTLR +LK L E + +AGI+ Sbjct: 178 KVVSAVVRLVPHAVPPDAGMVKQVSAVVVAAFGQRRKTLRNALKGLLDETAMVRAGIDPG 237 Query: 259 LRAENLSIEDFCRITNIL 276 RAE LS+ D+ ++ L Sbjct: 238 ARAEELSLADYVGLSRQL 255 >gi|227114236|ref|ZP_03827892.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 272 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 150/288 (52%), Gaps = 32/288 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQF------FPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113 +G R + VIE D+ P LKD +L IIQ DA+ +DF Sbjct: 53 A---PVGERMDRFTVIELDRDLAARLETHPTLKD-------KLTIIQQDAMTIDFAALAE 102 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+R+ NLPYNI T L+F+ T+ + + QKEV R+ A NS +GR Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 LSV+ + + + ++ P F P+PKV S V+ +PH P P + L +IT EAF Sbjct: 160 LSVMAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR SL L +L + GI+ + RAEN+++E +CR+ N L+++ Sbjct: 220 QRRKTLRNSLGNLFTPEILTELGIDVSSRAENVTVEQYCRLANWLSEH 267 >gi|255319639|ref|ZP_05360849.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82] gi|262379013|ref|ZP_06072170.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164] gi|255303323|gb|EET82530.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82] gi|262300298|gb|EEY88210.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164] Length = 270 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 139/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +++KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIEKIVRSVNPQPGDNIVEIGPGLAALTAPLIA-ECEALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +P RL II+ DALK DF + F P+R + NLPYNI T LLF+ + Sbjct: 76 LAAGLPG-RVPYPERLTIIESDALKYDFSQLFKEGQPLRAVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +RITA+ N+ YGRLSV+ + K T +F++ P F P PKV Sbjct: 135 DK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTYLFEVPPGSFNPPPKV 191 Query: 202 TSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V P+ + PI E +L ++ F +RRKTLR SLK + EN +AG+ Sbjct: 192 TSAVFRLEPYKDKPIVAQNEKALARLVSHVFTQRRKTLRNSLKGMLAENGFEKAGVNPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ +F +++ Sbjct: 252 RPETLTLAEFVALSD 266 >gi|121997814|ref|YP_001002601.1| dimethyladenosine transferase [Halorhodospira halophila SL1] gi|166221671|sp|A1WVT7|RSMA_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121589219|gb|ABM61799.1| dimethyladenosine transferase [Halorhodospira halophila SL1] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/256 (35%), Positives = 142/256 (55%), Gaps = 13/256 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 P+K GQNFL D +++++ + +G T++EIG G G LT+ LL LG + +E D Sbjct: 5 PRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLG--TLTAVELD 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P L++ + L +I+ DAL +D + +R++ NLPYN+ T +LF+ ++ Sbjct: 63 RDLAPRLQE---RFAPALRVIEGDALALDPAELAPAQGRLRVVGNLPYNVSTPILFHLLA 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A E L LL Q+EV +R+ A GRLSV+ +R + F++ FFP+P Sbjct: 120 AAD---VIEDLHLLLQREVVDRMVAPPGGKTRGRLSVMVQYRCRVERCFNVPAGAFFPAP 176 Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 KV S+ + +PH P+P + L+++ AFG RRKTLR SLK L AG++ Sbjct: 177 KVMSSFVRLVPH-RPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEAAGVD 235 Query: 257 TNLRAENLSIEDFCRI 272 RAE LS+E F R+ Sbjct: 236 PGARAETLSVEAFVRL 251 >gi|83648741|ref|YP_437176.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396] gi|119365027|sp|Q2S9C3|RSMA_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83636784|gb|ABC32751.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396] Length = 273 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 141/260 (54%), Gaps = 7/260 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ +I S ++EIG G G LT+ LL G V +E D+ Sbjct: 13 RKRFGQNFLHDQGVIDRIVRSINPKSDQNLVEIGPGLGALTEELLKSGG-SVTAVELDRD 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL+ +P + +I+ DALK DF + P+R+I NLPYNI T L+F+ + Sbjct: 72 LTPILRTKFFNYP-QFNVIEADALKFDFTQLATPERPMRLIGNLPYNISTPLIFHLL--- 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T+ + + + QKEV +R+ A+ YGRL V+ + K +F++ P F P+PKV Sbjct: 128 TFRGLVQDMYFMLQKEVVDRLAAKPGEDAYGRLGVMAQYYCKVESLFNVGPGAFQPAPKV 187 Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ P+ P C + +L + ++AF RRKTLR +LK+L + L I+ + Sbjct: 188 WSAIVRLTPYTEPPLACKDVATLTTVVRQAFAMRRKTLRNTLKQLITVDALQSLDIDPQI 247 Query: 260 RAENLSIEDFCRITNILTDN 279 R E L + +F RI + + D+ Sbjct: 248 RPERLGLPEFVRIADYVYDH 267 >gi|317493320|ref|ZP_07951742.1| dimethyladenosine transferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918713|gb|EFV40050.1| dimethyladenosine transferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 270 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 151/282 (53%), Gaps = 22/282 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLTDQYVIDSIVSAIHPMPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSP 118 + + K+ VIE D+ L + HP ++L I Q DA+ VDF + + P Sbjct: 53 EPVAD-RMDKMTVIELDRDLAARL----ATHPFISSKLNIRQQDAMTVDFGELSQELGQP 107 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +R+ NLPYNI T L+F+ T+ + + QKEV R+ A NS YGRL+V+ Sbjct: 108 LRVFGNLPYNISTPLMFHLF---TYTGAISDMHFMLQKEVVNRLVAGPNSKAYGRLTVMA 164 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKT 236 + + + ++ P F P+PKV S V+ IPH P P + L +IT EAF +RRKT Sbjct: 165 QYYCQVIPVLEVPPTAFRPAPKVDSAVVRLIPHATIPHPVKDIRVLSRITTEAFNQRRKT 224 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +R SL L L + GI+ LRAEN+S+E++C++ N L + Sbjct: 225 VRNSLGHLFTPEQLTELGIDPALRAENISVENYCKLANWLCE 266 >gi|117925614|ref|YP_866231.1| dimethyladenosine transferase [Magnetococcus sp. MC-1] gi|171460784|sp|A0LA32|RSMA_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117609370|gb|ABK44825.1| dimethyladenosine transferase [Magnetococcus sp. MC-1] Length = 279 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/270 (35%), Positives = 149/270 (55%), Gaps = 10/270 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K +L + + P K GQNFL+D ++ +I +G G V+EIG G G+LT LL Sbjct: 7 IKLLLEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQ-K 65 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYN 128 A V +EKD++ P+L+ + + L ++++DAL VD+ + P+++ ANLPYN Sbjct: 66 AGAVTAVEKDRKLLPLLR-VEAAGVGALTLVEEDALLVDYTALAQQLGGPLKLAANLPYN 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+ + + +E + L+FQKEV +R+ A+ S YG L+V + F Sbjct: 125 ISTPLMVHLLDHHAA---FECMALMFQKEVAQRLAAEPGSKAYGALTVQCALWAEIRHGF 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246 D+ P F P+PKVTS V+H P + ++ + AF +RRKTLR +LK + Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRVAVEDERHFVRVVKAAFAQRRKTLRNTLKTICP 241 Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRITN 274 + L QAGI+ LRAE L++ F ++ N Sbjct: 242 DPNRWLEQAGIDGALRAEVLTLAQFAQLAN 271 >gi|260554070|ref|ZP_05826333.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624] gi|260404809|gb|EEW98316.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624] Length = 270 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRPGDNIVEIGPGLAALTSPLIG-ECEALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + HP RL I++ DALK DF + P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPE-RVPHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P PKV Sbjct: 135 SQ---VKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V +P+ PI E +L ++ F +RRKTLR SLK + E+ +AG++ Sbjct: 192 TSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ +F + + Sbjct: 252 RPETLTLAEFVALAD 266 >gi|118445093|ref|YP_879149.1| dimethyladenosine transferase [Clostridium novyi NT] gi|118135549|gb|ABK62593.1| dimethyladenosine transferase [Clostridium novyi NT] Length = 281 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 146/276 (52%), Gaps = 13/276 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y K +GQNFL D N+L I S + VIEIG G G LT+ LL A Sbjct: 7 KDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK-KA 65 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +KV +E D + PIL + PN E+I DALKVDF + ++++ANLPY + Sbjct: 66 KKVCAVELDSELIPILTEELKDFPN-FELIHKDALKVDFNELIGEEKSVKVVANLPYYVT 124 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + ++SLT++ QKEV ERI ++ N YG LS+L + ++ + Sbjct: 125 TPIIARLLKEGYK---FKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILRKV 181 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG-- 246 P F P PKV S +I P + E L KI +++F RRKTLR ++K LG Sbjct: 182 PPTCFIPQPKVDSIIIKLDRLDEPRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGDVS 241 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E + + AGI+ R E LSIE+F ++ + + D Sbjct: 242 GDHIEKVFNDAGIDPRRRGETLSIEEFGKLADSIYD 277 >gi|116054320|ref|YP_788765.1| dimethyladenosine transferase [Pseudomonas aeruginosa UCBPP-PA14] gi|218889333|ref|YP_002438197.1| dimethyladenosine transferase [Pseudomonas aeruginosa LESB58] gi|254237194|ref|ZP_04930517.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa C3719] gi|296387098|ref|ZP_06876597.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAb1] gi|115589541|gb|ABJ15556.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169125|gb|EAZ54636.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa C3719] gi|218769556|emb|CAW25316.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa LESB58] Length = 268 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 7/264 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + VI Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P E + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + A Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ LR E L + F R+ N L + Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAE 263 >gi|169634292|ref|YP_001708028.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii SDF] gi|169794673|ref|YP_001712466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii AYE] gi|184159517|ref|YP_001847856.1| dimethyladenosine transferase [Acinetobacter baumannii ACICU] gi|213157955|ref|YP_002320753.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057] gi|239504128|ref|ZP_04663438.1| dimethyladenosine transferase [Acinetobacter baumannii AB900] gi|260558120|ref|ZP_05830330.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606] gi|301345850|ref|ZP_07226591.1| dimethyladenosine transferase [Acinetobacter baumannii AB056] gi|301512166|ref|ZP_07237403.1| dimethyladenosine transferase [Acinetobacter baumannii AB058] gi|301595546|ref|ZP_07240554.1| dimethyladenosine transferase [Acinetobacter baumannii AB059] gi|332851556|ref|ZP_08433533.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150] gi|332867755|ref|ZP_08437827.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113] gi|332873490|ref|ZP_08441441.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059] gi|169147600|emb|CAM85461.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii AYE] gi|169153084|emb|CAP02154.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii] gi|183211111|gb|ACC58509.1| Dimethyladenosine transferase (rRNA methylation) [Acinetobacter baumannii ACICU] gi|193078414|gb|ABO13399.2| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC 17978] gi|213057115|gb|ACJ42017.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057] gi|260408393|gb|EEX01701.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606] gi|322509429|gb|ADX04883.1| dimethyladenosine transferase [Acinetobacter baumannii 1656-2] gi|323519450|gb|ADX93831.1| dimethyladenosine transferase [Acinetobacter baumannii TCDC-AB0715] gi|332729901|gb|EGJ61233.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150] gi|332733761|gb|EGJ64913.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113] gi|332738315|gb|EGJ69191.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059] Length = 270 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRTGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + HP RL I++ DALK DF + P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPE-RVPHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P PKV Sbjct: 135 SQ---VKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V +P+ PI E +L ++ F +RRKTLR SLK + E+ +AG++ Sbjct: 192 TSAVFRLVPYEQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ +F + + Sbjct: 252 RPETLTLAEFVALAD 266 >gi|15595789|ref|NP_249283.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAO1] gi|27151603|sp|Q9I5U5|RSMA_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|9946464|gb|AAG03981.1|AE004495_5 rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa PAO1] Length = 268 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 7/264 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + VI Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P E + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + A Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ LR E L + F R+ N L + Sbjct: 240 VDPTLRPEQLDLAAFVRLANQLAE 263 >gi|170723958|ref|YP_001751646.1| dimethyladenosine transferase [Pseudomonas putida W619] gi|169761961|gb|ACA75277.1| dimethyladenosine transferase [Pseudomonas putida W619] Length = 266 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL+ + N + Q DALK DF + + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILQHKFAGRDN-FRLHQGDALKFDFNQLGVPARSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + P P L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDHLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 AG++ +LR E L + F R+ + L + Q Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLANQQ 265 >gi|313111762|ref|ZP_07797555.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 39016] gi|310884057|gb|EFQ42651.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 39016] Length = 268 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 7/264 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + VI Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFTSLVESGEKLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P E + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + A Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ LR E L + F R+ N L + Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAE 263 >gi|51473851|ref|YP_067608.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington] gi|62900511|sp|Q68W66|RSMA_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51460163|gb|AAU04126.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington] Length = 268 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 9/262 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + ++I P K GQNF+ D ++ KI +S + VIEIG G G LT+ +L + + Sbjct: 10 ASHQINPLKKHGQNFIFDSSLCDKIIRASNISENSKVIEIGPGVGGLTRSILHKNPKSLT 69 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE D++ P+L +I +PN L II+ D LK++ I + +I+NLPY+IGT L+ Sbjct: 70 VIEIDERCIPLLNEIQGYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLPYHIGTELV 126 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + ++ L+ QKEV ERI A ++ YGRLSV+ K FD++P Sbjct: 127 IRLLKEAK---LITNMILMLQKEVVERICAMPSTKAYGRLSVICQIVAKVEKCFDVAPTA 183 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLH 251 F+P PKV S ++ IP NP L +++IT+ F RRK ++ SL+ L +L Sbjct: 184 FYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLVPNIHEVLT 243 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 Q I N RAENL+ +D+ RI Sbjct: 244 QLKINNNDRAENLTPKDYLRIA 265 >gi|261344781|ref|ZP_05972425.1| hypothetical protein PROVRUST_06046 [Providencia rustigianii DSM 4541] gi|282567226|gb|EFB72761.1| dimethyladenosine transferase [Providencia rustigianii DSM 4541] Length = 269 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 151/281 (53%), Gaps = 20/281 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I ++ G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVDAMHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119 + +G+R K+ V+E D+ L + Q ++L IIQ DA+ VDF + PI Sbjct: 53 E---PVGSRMDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPI 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ T+ + + QKEV R+ A S +GRLSV+ Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTL 237 + + ++ P F P+PKV S V+ IPH NP P ++ L +IT +AF +RRKT+ Sbjct: 166 YYCNVVPVLEVPPTSFTPAPKVDSAVVRLIPHRENPYPVKDIKMLSRITTQAFNQRRKTI 225 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R SL L L + GI+ RAEN+S+ +C++ N L++ Sbjct: 226 RNSLGDLLSVEQLIELGIDPGTRAENISVAHYCKMANYLSN 266 >gi|50086027|ref|YP_047537.1| dimethyladenosine transferase [Acinetobacter sp. ADP1] gi|62900521|sp|Q6F8A0|RSMA_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49532003|emb|CAG69715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter sp. ADP1] Length = 274 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/255 (37%), Positives = 139/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G V+EIG G LT L+ + V+E D+ Sbjct: 21 RKRFGQNFLHDQRVIAKIVRSVNPRPGDNVVEIGPGLAALTSPLIG-ECDALTVVELDRD 79 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L D HP RL I++ DALK DF + SP+R++ NLPYNI T LLF+ + Sbjct: 80 LAAGLPD-RVPHPERLTIVEADALKYDFSQLATQESPLRVVGNLPYNISTPLLFHLLEFG 138 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +RITA+ N+ YGRLSV+ + + T +F++ F P PKV Sbjct: 139 DK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYFCQPTFLFEVPAGAFNPPPKV 195 Query: 202 TSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V +P+ PI E +L ++ F +RRKTLR SLK + ++ +AGI+ Sbjct: 196 TSAVFRLVPYKEKPIVAKDEKALSRLVGHVFTQRRKTLRNSLKGMLADDAFDKAGIDPMA 255 Query: 260 RAENLSIEDFCRITN 274 R E L++ F +++ Sbjct: 256 RPETLTLAQFVALSD 270 >gi|257465501|ref|ZP_05629872.1| dimethyladenosine transferase [Actinobacillus minor 202] gi|257451161|gb|EEV25204.1| dimethyladenosine transferase [Actinobacillus minor 202] Length = 289 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 96/269 (35%), Positives = 148/269 (55%), Gaps = 20/269 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+NI+ I + +G ++EIG G G LT+ + L K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNIIHGIVSAINPKNGQYLLEIGPGLGALTEPVAEL-VDKLTVVELDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133 L+ HP ++L II+ DAL+ +F ++F +R+ NLPYNI T L Sbjct: 74 LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLDLKEDEGVRVFGNLPYNISTPL 129 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F P+PKV S V+ +PH IP ++ L ++T +AF +RRKTLR +L L L Sbjct: 187 AFKPAPKVDSAVVRLVPH-KQIPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQL 245 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 GI+ N RAENL+I D+ R+ N L DN Sbjct: 246 ETLGIDLNARAENLNIADYARLANWLCDN 274 >gi|50122780|ref|YP_051947.1| dimethyladenosine transferase [Pectobacterium atrosepticum SCRI1043] gi|115311578|sp|Q6D0E0|RSMA_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49613306|emb|CAG76757.1| dimethyladenosine transferase [Pectobacterium atrosepticum SCRI1043] Length = 272 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 +G R + VIE D+ L+ +HP ++L IIQ DA+ +DF Sbjct: 53 A---PIGERMDRFTVIELDRDLAARLE----KHPTLKDKLTIIQQDAMTIDFAALAEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ T+ + + QKEV R+ A NS +GRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKTFGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAELPYPVSDIRMLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTLR SL L L + GI RAEN+++E +CR+ N L+++ Sbjct: 223 KTLRNSLGNLFTPETLTELGINITSRAENVTVEQYCRLANWLSEH 267 >gi|261823067|ref|YP_003261173.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163] gi|261607080|gb|ACX89566.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163] Length = 272 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 150/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 +G R + VIE D+ L+ +HP ++L IIQ DA+ +DF Sbjct: 53 A---PIGDRMDRFTVIELDRDLAARLE----KHPTLKDKLTIIQQDAMTIDFAALAEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ T+ + + QKEV R+ A NS +GRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +PH + P P + L +IT EAF +RR Sbjct: 163 MAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAVIPYPVSDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTLR SL L L + GI RAEN+++E +CR+ N L+++ Sbjct: 223 KTLRNSLGNLFTPETLTELGINVTSRAENVTVEQYCRLANWLSEH 267 >gi|254362983|ref|ZP_04979047.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica PHL213] gi|153094639|gb|EDN75443.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica PHL213] Length = 288 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 19/268 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+NI+ I + +G ++EIG G G LT+ + L K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGALTEPVAEL-VDKLTVVEIDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN----ISSPIRIIANLPYNIGTRLL 134 L+ HP +L II+ DAL+ +F +FN +R+ NLPYNI T L+ Sbjct: 74 LAERLR----HHPFLNQKLTIIEQDALRFNFRDYFNQLNLDEDSVRVFGNLPYNISTPLI 129 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + T+ + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 FHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLEVPPTA 186 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S V+ +P+ N +P + L ++T +AF +RRKTLR +L L L Sbjct: 187 FKPAPKVDSAVVRLVPY-NQLPYPAKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQLD 245 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 G++ RAENL+I D+ R+ N L DN Sbjct: 246 ALGVDLTARAENLTIADYVRLANWLHDN 273 >gi|283835115|ref|ZP_06354856.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220] gi|291069414|gb|EFE07523.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220] Length = 273 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 151/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D +++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F + + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAQTMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPAPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L + GI+ +RAEN+S+ +CR+ N L++N Sbjct: 223 KTVRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267 >gi|237729348|ref|ZP_04559829.1| dimethyladenosine transferase [Citrobacter sp. 30_2] gi|226909077|gb|EEH94995.1| dimethyladenosine transferase [Citrobacter sp. 30_2] Length = 273 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 151/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D +++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F + + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAQTMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPAPKVDSAVVRLVPHTTMPYPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L + GI+ +RAEN+S+ +CR+ N L++N Sbjct: 223 KTVRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267 >gi|26987143|ref|NP_742568.1| dimethyladenosine transferase [Pseudomonas putida KT2440] gi|33516928|sp|Q88QT6|RSMA_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24981775|gb|AAN66032.1|AE016232_5 dimethyladenosine transferase [Pseudomonas putida KT2440] gi|313496767|gb|ADR58133.1| KsgA [Pseudomonas putida BIRD-1] Length = 267 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 145/266 (54%), Gaps = 7/266 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ V+ Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+F+ Sbjct: 64 ELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +PH + P P L+++ +EAF +RRKTLR ++K L + AG Sbjct: 180 PPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAAG 239 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 ++ +LR E L + F R+ + L D Q Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQQ 265 >gi|332160258|ref|YP_004296835.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664488|gb|ADZ41132.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863032|emb|CBX73164.1| dimethyladenosine transferase [Yersinia enterocolitica W22703] Length = 272 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 154/283 (54%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS 117 + + AR + VIE D+ L + HP ++L I Q+DA+K++F + ++ Sbjct: 53 E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAELAG 105 Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ IPH+N P P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 223 KTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|318607172|emb|CBY28670.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 272 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 154/283 (54%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS 117 + + AR + VIE D+ L + HP ++L I Q+DA+K++F + ++ Sbjct: 53 E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAELAG 105 Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ IPH+N P P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 223 KTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|67458648|ref|YP_246272.1| dimethyladenosine transferase [Rickettsia felis URRWXCal2] gi|67004181|gb|AAY61107.1| Dimethyladenosine transferase [Rickettsia felis URRWXCal2] Length = 243 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 136/241 (56%), Gaps = 10/241 (4%) Query: 8 HSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 H L +I H ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ Sbjct: 4 HMLPSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRS 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 +L + VIE D++ P+L +I +PN L II+ DALK++ + II+N Sbjct: 64 ILQKNPASLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLG--YDKVTIISN 120 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+IGT L+ W+ ++TL+ QKEV ERI A ++ YGRLSV+ TK Sbjct: 121 LPYHIGTELVIRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKV 177 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKR 243 FD++P F+P PKV S ++ IP NP L +++IT+ AF RRK ++ SLK Sbjct: 178 EKCFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKN 237 Query: 244 L 244 L Sbjct: 238 L 238 >gi|187777327|ref|ZP_02993800.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC 15579] gi|187774255|gb|EDU38057.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC 15579] Length = 278 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 106/284 (37%), Positives = 158/284 (55%), Gaps = 16/284 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN + K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT Sbjct: 1 MNN--MNTKEIVNKYEFKFNKNLGQNFLVDESVLEDIIEGAEISKEDTVIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A++V IE D PILK+ ++ N +I DALK+DF I+++ Sbjct: 59 KELLE-KAKEVYSIELDGDLIPILKEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + Sbjct: 117 ANLPYYVTTPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239 ++ +SP+ F P PKV S VI + L+ ++S K + + +F RRKTL Sbjct: 174 DTKIIRKVSPNCFIPRPKVDSIVIK-LDKLSEPRVKVKSEKLFFNVVRSSFNMRRKTLWN 232 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 SLK L EN +AGI++ R E LSIE+F ++++ + D Sbjct: 233 SLKSLNIDKENMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 276 >gi|261338954|ref|ZP_05966812.1| hypothetical protein ENTCAN_05155 [Enterobacter cancerogenus ATCC 35316] gi|288318781|gb|EFC57719.1| dimethyladenosine transferase [Enterobacter cancerogenus ATCC 35316] Length = 273 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/272 (36%), Positives = 146/272 (53%), Gaps = 18/272 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73 H + +K GQNFL D ++ I + G ++EIG G LT+ +G R ++ Sbjct: 6 HQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEL 62 Query: 74 IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNI 129 VIE D+ L+ HP +L I Q DA+ +DF E + P+R+ NLPYNI Sbjct: 63 TVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMDFGELSTKMGQPLRVFGNLPYNI 118 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ S + + + QKEV R+ A NS YGRLSV+ + + + Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYFCNVIPVLE 175 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S V+ +PH P P L L +IT EAF +RRKT+R SL L Sbjct: 176 VPPTAFTPPPKVDSAVVRLVPHKTMPYPVKELRVLSRITTEAFNQRRKTIRNSLGNLFTV 235 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++L + GI+ +RAEN+S+E +C++ N ++DN Sbjct: 236 DVLAELGIDPTMRAENISVEQYCKLANYISDN 267 >gi|104779701|ref|YP_606199.1| dimethyladenosine transferase [Pseudomonas entomophila L48] gi|95108688|emb|CAK13382.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Pseudomonas entomophila L48] Length = 266 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 146/268 (54%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILQHKFAGRGN-FRLHQGDALKFDFNQLGVPERSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLAHAN---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + P P L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDPLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 AG++ +LR E L + F R+ + L + Q Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAEQQ 265 >gi|152979807|ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] gi|226732589|sp|A6SV13|RSMA_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151279884|gb|ABR88294.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] Length = 255 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +L I + T++EIG G +T++LL G +++ V+E Sbjct: 2 KHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLE-GVQQMHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136 D+ LK S P RL I DAL+ DF S +R++ NLPYNI + LLF+ Sbjct: 61 LDRDLVERLK--KSFDPKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P + + QKEV ER+ A+ S YGRLSV+ WR +MF + P F Sbjct: 119 LAE---MAPHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ IP P+PC L+++ +AF +RRK +R L + E+ L + GI+ Sbjct: 176 PPPRVESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEVGID 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 LR E + + + + N L Sbjct: 236 PQLRPETIPLAQYVALANRL 255 >gi|262377470|ref|ZP_06070692.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145] gi|262307526|gb|EEY88667.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145] Length = 270 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 142/258 (55%), Gaps = 13/258 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 +K GQNFL D ++ KI S G ++EIG G LT L+ A V+ +++D Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRPGQNILEIGPGLAALTSPLIGECDALTVLELDRD- 75 Query: 81 QFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + +S + HP RL II+ DAL+ D+ + F P+R++ NLPYNI T LLF+ + Sbjct: 76 ----LAAGLSGRVPHPERLTIIEADALRYDYSQLFQEDRPLRVVGNLPYNISTPLLFHLL 131 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P Sbjct: 132 EFGDK---VQDMHFMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPP 188 Query: 199 PKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKVTS V P+ + PI E +L ++ F +RRKTLR SLK + E +AG++ Sbjct: 189 PKVTSAVFRLEPYKVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEEGFEKAGVD 248 Query: 257 TNLRAENLSIEDFCRITN 274 R E L++E F +++ Sbjct: 249 PMARPETLTLEQFVALSD 266 >gi|293611446|ref|ZP_06693741.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826230|gb|EFF84600.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 270 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPE-RVPHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV +RITA+ N+ YGRLSV+ + + T +F++ F P PKV Sbjct: 135 SK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V +P+ PI E +L ++ F +RRKTLR SLK + E+ +AG++ Sbjct: 192 TSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAEDGFEKAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ F + + Sbjct: 252 RPETLTLAQFVALAD 266 >gi|49082884|gb|AAT50842.1| PA0592 [synthetic construct] Length = 269 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 7/264 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + VI Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P E + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + A Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ L E L + F R+ N L + Sbjct: 240 VDPTLHPEQLDLAAFVRLANQLAE 263 >gi|291616236|ref|YP_003518978.1| KsgA [Pantoea ananatis LMG 20103] gi|291151266|gb|ADD75850.1| KsgA [Pantoea ananatis LMG 20103] gi|327392687|dbj|BAK10109.1| Dimethyladenosine transferase KsgA [Pantoea ananatis AJ13355] Length = 273 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 150/288 (52%), Gaps = 28/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H HY +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQRDQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 + +G R + V+E D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDSLTVVELDRDLAARLQ----THPFLGPKLTIFQQDAMTFDFAALAKEKG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A S YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKR 233 + + + + ++ PH F P PKV S V+ +P++ P P ++ L +IT EAFG+R Sbjct: 163 MAQYYCQVIPVLEVPPHSFTPPPKVDSAVVRLVPYMTP-PHPVKDVRILSRITTEAFGQR 221 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RKTLR SL + L + I+T+LRAEN+S+ +C++ N L D+ D Sbjct: 222 RKTLRNSLSHMVVAGALDELEIDTSLRAENVSVAQYCQLANWLADHLD 269 >gi|238922667|ref|YP_002936180.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656] gi|238874339|gb|ACR74046.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656] Length = 288 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 149/278 (53%), Gaps = 20/278 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y +K GQNFL+D IL++I +S+G ++EIG G G +TQ L AR+ Sbjct: 13 VLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCE-SARQ 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 VI +E D PILKD S++ N +++I DD LKVD +N PI+++ANLPY I Sbjct: 72 VIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +S+T++ QKEV +R+ A YG LS+ + + ++ + Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQAAPGKKDYGALSLAVQYYSHPEIVVN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG 246 + P F P PKV S+VI + P+ +E K KI + +F +RRKTL L GG Sbjct: 188 VPPSCFMPQPKVGSSVISLKRYEKPV-VDVEDEKLMFKIIRASFNQRRKTLANGLNNFGG 246 Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 L + G+ N+R E LS+ F +++NI+ Sbjct: 247 MGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284 >gi|148545687|ref|YP_001265789.1| dimethyladenosine transferase [Pseudomonas putida F1] gi|148509745|gb|ABQ76605.1| dimethyladenosine transferase [Pseudomonas putida F1] Length = 267 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 144/266 (54%), Gaps = 7/266 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ V+ Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL + N + Q DALK DF + ++++ NLPYNI T L+F+ Sbjct: 64 ELDKDLVPILHHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +PH + P P L+++ +EAF +RRKTLR ++K L + AG Sbjct: 180 PPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAAG 239 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 ++ +LR E L + F R+ + L D Q Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQQ 265 >gi|320539608|ref|ZP_08039272.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson] gi|320030220|gb|EFW12235.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson] Length = 272 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 151/282 (53%), Gaps = 20/282 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G +IEIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPQPGEAIIEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPI 119 + +GAR ++ VIE D+ L + SS ++L I Q DA+ V+F E P+ Sbjct: 53 E---PVGARMDRMTVIELDRDLAAWLANHSSLK-DKLTIYQQDAMTVNFAEMAKQAGQPL 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ + + + QKEV R+ A +S YGRLSV+ Sbjct: 109 RVFGNLPYNISTPLMFHLF---IYTQEIRDMHFMLQKEVVNRLVAGPDSKAYGRLSVMAQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237 + + ++ P F P+PKV S V+ +PH + P P + L +IT +AF +RRKT+ Sbjct: 166 YYCNVIPVLEVPPTSFTPAPKVDSAVVRLVPHSVMPNPVSDVHMLSRITTQAFNQRRKTI 225 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R SL L L + GI +LRAEN+S+ +C++ N L+DN Sbjct: 226 RNSLGDLFTPVQLMELGINASLRAENISVAQYCKLANWLSDN 267 >gi|229592954|ref|YP_002875073.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25] gi|229364820|emb|CAY52848.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25] Length = 270 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 92/265 (34%), Positives = 143/265 (53%), Gaps = 7/265 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D ++ +I S + ++EIG G G LTQ LL G ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF + +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNQQFAGMPN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSQAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262 >gi|110834909|ref|YP_693768.1| ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2] gi|122064277|sp|Q0VMV2|RSMA_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110648020|emb|CAL17496.1| Ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2] Length = 280 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/264 (35%), Positives = 143/264 (54%), Gaps = 10/264 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D N++ ++ + G G T++EIG G G LT LL + V+E D+ Sbjct: 7 RKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLE-ELPHLHVVELDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 +L+ ++ P RL I + DAL+ DF P+R+I NLPYNI T L+F+ ++ A Sbjct: 66 LIALLRQENT--PERLTIHESDALRFDFRTLKPADKPLRVIGNLPYNISTPLIFHLLAQA 123 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D +T + QKEV ER+TA + +GRLS++ + +A +F + P F P P+ Sbjct: 124 DAI----SDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPPPR 179 Query: 201 VTSTVIHFIPHLNPI-PCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ IPH +P P E L+K+ +AF +RRK +R LK GI+ Sbjct: 180 VDSAVVRLIPHDSPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQAVGIDAG 239 Query: 259 LRAENLSIEDFCRITNILTDNQDI 282 LR + LS+ D+ + NI D+ Sbjct: 240 LRPDQLSVADYVALANISRPPADV 263 >gi|167031448|ref|YP_001666679.1| dimethyladenosine transferase [Pseudomonas putida GB-1] gi|166857936|gb|ABY96343.1| dimethyladenosine transferase [Pseudomonas putida GB-1] Length = 266 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/266 (34%), Positives = 146/266 (54%), Gaps = 7/266 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + + G ++EIG G G LT+ LL GA ++ V+ Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+F+ Sbjct: 64 ELDKDLVPILQHKFADRGN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +PH + P P + L+++ +EAF +RRKTLR ++K L + AG Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPAKDAKLLEQVVREAFNQRRKTLRNTMKGLLDSAAIEAAG 239 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 ++ +LR E L + F R+ + L D Q Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQQ 265 >gi|145300235|ref|YP_001143076.1| dimethyladenosine transferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853007|gb|ABO91328.1| dimethyladenosine transferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 275 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 149/284 (52%), Gaps = 17/284 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M++K S K + H +K GQNFL D ++ +I + G ++EIG G LT Sbjct: 1 MSSKVQSNKVHMGH---TARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALT 57 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS-SP 118 + + + K+ V+E D+ L+ +HP ++L +I+ DA++ DF P Sbjct: 58 EPVAS-QMDKMTVVELDRDLAARLR----EHPTLKDKLTVIEADAMRFDFGTLMGEGKGP 112 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +RI NLPYNI T L+F+ + E + + QKEV R++A S YGRLSV+ Sbjct: 113 LRIFGNLPYNISTPLIFHLCD---FADRVEDMHFMLQKEVVLRMSAGPGSKAYGRLSVMV 169 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKT 236 + + + ++ P F P+PKV S V+ +PH NP + + L ++ E FG+RRKT Sbjct: 170 QYYCQVIPVLEVGPGAFKPAPKVDSAVVRLVPHKNPTIVAKDIRCLSRVCTEGFGQRRKT 229 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +R S + L + GI+ NLR ENLS+E F I N L D Q Sbjct: 230 IRNSFANFITDAQLTELGIDGNLRPENLSLEQFVMIANWLADQQ 273 >gi|161830385|ref|YP_001595993.1| dimethyladenosine transferase [Coxiella burnetii RSA 331] gi|226729775|sp|A9N9I7|RSMA_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|161762252|gb|ABX77894.1| dimethyladenosine transferase [Coxiella burnetii RSA 331] Length = 258 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 8/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E D+ Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ S Sbjct: 66 LVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P P+V Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTPPPRV 180 Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I L Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240 Query: 260 RAENLSIEDFCRITNIL 276 R + L++EDF +I+NIL Sbjct: 241 RPQELTVEDFVKISNIL 257 >gi|253988048|ref|YP_003039404.1| dimethyladenosine transferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779498|emb|CAQ82659.1| dimethyladenosine transferase [Photorhabdus asymbiotica] Length = 272 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 20/287 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVAAINPQPGQAVLEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119 + +G R K+ V+E D+ L+ + Q ++L IIQ DA+ V+F + P+ Sbjct: 53 E---PVGERMDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGLPL 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ S + + + QKEV R+ A S +GRLSV+ Sbjct: 109 RVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKAFGRLSVMAQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237 + + + ++ P F P+PKV S V+ IPH + P P + L +IT +AF +RRKT+ Sbjct: 166 YYCQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKSIPYPVKNIRMLSRITTQAFNQRRKTI 225 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 R SL L L + GI+ + RAEN+S+E +C++ N L++ ++ + Sbjct: 226 RNSLGDLFTVEQLTEFGIDPSTRAENISVEQYCKMANYLSEQPEMQL 272 >gi|165918726|ref|ZP_02218812.1| dimethyladenosine transferase [Coxiella burnetii RSA 334] gi|212213440|ref|YP_002304376.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212] gi|215919310|ref|NP_820957.2| dimethyladenosine transferase [Coxiella burnetii RSA 493] gi|218511667|sp|Q83AC2|RSMA_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729773|sp|B6J3A6|RSMA_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|165917554|gb|EDR36158.1| dimethyladenosine transferase [Coxiella burnetii RSA 334] gi|206584195|gb|AAO91471.2| dimethyladenosine transferase [Coxiella burnetii RSA 493] gi|212011850|gb|ACJ19231.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212] Length = 258 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 8/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E D+ Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ S Sbjct: 66 LVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P P+V Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 180 Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I L Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240 Query: 260 RAENLSIEDFCRITNIL 276 R + L++EDF +I+NIL Sbjct: 241 RPQELTVEDFVKISNIL 257 >gi|237746914|ref|ZP_04577394.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes HOxBLS] gi|229378265|gb|EEO28356.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes HOxBLS] Length = 256 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 136/260 (52%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P+K GQNFL D ++L KI + ++EIG G G +T LL +R + VIE Sbjct: 2 KHLPRKRFGQNFLKDPSVLDKIIAAIAPAASDIMVEIGPGMGAMTGKLLPSLSR-LEVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136 D+ L++ P +L + Q DAL D S IRI+ NLPYNI T LLF+ Sbjct: 61 LDRDLVVYLRNTFP--PEKLVVHQGDALAFDMRSLKEQSGEKIRIVGNLPYNISTPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + F + + Q+EV ER+ A+ S YGRLSV+ W+ M+F + P F Sbjct: 119 LLEFSL---FVKDQHFMLQREVVERMVAEPGSKAYGRLSVMLQWQYDMDMLFIVPPEAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P PKV S V+ IP NP C +L+K +AF +RRK LR +L E L GIE Sbjct: 176 PQPKVDSAVVRMIPKENPEKCSFPALEKTVTQAFSQRRKMLRNNLAPFFTEAELTGLGIE 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 R E LS+E F R+ N L Sbjct: 236 PTKRPEELSVEQFIRLANHL 255 >gi|120556413|ref|YP_960764.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8] gi|226732595|sp|A1U6F8|RSMA_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120326262|gb|ABM20577.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8] Length = 276 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 8/259 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++I + +++EIG G G +T+ +L + R + V+E D+ Sbjct: 10 RKRFGQNFLHDPGVIERIVRAINPKPEDSIVEIGPGLGAITEEILAINPR-LQVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+L+ +P I + DAL DF + + P+RI+ NLPYNI T L+F+ +S Sbjct: 69 LIPVLRTKFFNYPE-FRIHEADALSFDFSQLVS-DRPLRIVGNLPYNISTPLIFHLLSQS 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +R+ A +YGRL ++ + K +F++ P F P+PKV Sbjct: 127 G---VVQDMHFMLQKEVVQRLAAVPGDNNYGRLGIMAQYFCKVQPLFEVGPGAFRPAPKV 183 Query: 202 TSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +PH P P L++L+ + + AF RRKTLR++L + L GI L Sbjct: 184 DSAIVRLVPHKELPYPAKDLKTLQAVVRTAFNARRKTLRKALAAMVTVEQLQSLGINDGL 243 Query: 260 RAENLSIEDFCRITNILTD 278 R ENL + D+ RI ++L D Sbjct: 244 RPENLGLADYVRIADLLAD 262 >gi|146310264|ref|YP_001175338.1| dimethyladenosine transferase [Enterobacter sp. 638] gi|166987694|sp|A4W6F7|RSMA_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|145317140|gb|ABP59287.1| dimethyladenosine transferase [Enterobacter sp. 638] Length = 273 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 149/272 (54%), Gaps = 18/272 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73 H + +K GQNFL D +++ I + G ++EIG G LT+ +G R ++ Sbjct: 6 HQGHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEM 62 Query: 74 IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129 VIE D+ LK HP +L I Q DA+ ++F + + P+R+ NLPYNI Sbjct: 63 TVIELDRDLAARLKT----HPFLGPKLTIYQQDAMTMNFAELSEKLGQPLRVFGNLPYNI 118 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ S + + + QKEV R+ A NS YGRLSV+ + + + + Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQIIPVLE 175 Query: 190 ISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ +PH + P P L L +IT EAF +RRKT+R SL Sbjct: 176 VPPTAFTPAPKVESAVVRLVPHAVMPHPVKELRVLSRITTEAFNQRRKTIRNSLGNTFTV 235 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++L + GI+ +RAEN+S+E +C++ N ++DN Sbjct: 236 DVLTELGIDPAMRAENISVEQYCKLANYISDN 267 >gi|330813911|ref|YP_004358150.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. IMCC9063] gi|327487006|gb|AEA81411.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. IMCC9063] Length = 258 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/261 (34%), Positives = 152/261 (58%), Gaps = 8/261 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL + I+ +I S+ V E+G G G L++ ++ + +K + +E D+ Sbjct: 2 KKKFGQNFLNNQTIIDQIITSANITKDSIVYEVGPGDGALSREIVKINPKKYLAVEIDKG 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L D+ ++ + II +DAL+ D F S + II+NLPYNI +LL WI+ Sbjct: 62 LIQKLDDVFAKKEHW--IINEDALQFDETSVF--SKNVTIISNLPYNISLKLLLKWINQY 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P+++ + L+FQKEVGERI +++NS YGR+S++ + + + DI+ + FFP PKV Sbjct: 118 ITNPWFDQMILMFQKEVGERILSEENSKKYGRISLIVSAFFQCSKILDINKNDFFPVPKV 177 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET-- 257 S +I F+P I + L+ +++ F RRK L+ +K+L E ++ + ++ Sbjct: 178 DSVMIKFVPLKKTIINNKNIHKLELLSKTLFANRRKKLKNKIKQLFDERVIEENKLDQYF 237 Query: 258 NLRAENLSIEDFCRITNILTD 278 +LRAEN+S E+F ++T +L D Sbjct: 238 DLRAENISKENFYQLTKLLKD 258 >gi|291526466|emb|CBK92053.1| dimethyladenosine transferase [Eubacterium rectale DSM 17629] Length = 292 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y +K GQNFL+D IL++I +S+G ++EIG G G +TQ L AR+ Sbjct: 13 VLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCE-SARQ 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 VI +E D PILKD S++ N +++I DD LKVD +N PI+++ANLPY I Sbjct: 72 VIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +S+T++ QKEV +R+ A YG LS+ + + ++ + Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQYYSHPEIVVN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S+VI + P+ + + KI + +F +RRKTL L GG Sbjct: 188 VPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTLANGLNNFGGM 247 Query: 248 NL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 L + G+ N+R E LS+ F +++NI+ Sbjct: 248 GLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284 >gi|291526963|emb|CBK92549.1| dimethyladenosine transferase [Eubacterium rectale M104/1] Length = 288 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y +K GQNFL+D IL++I +S+G ++EIG G G +TQ L AR+ Sbjct: 13 VLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCE-SARQ 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 VI +E D PILKD S++ N +++I DD LKVD +N PI+++ANLPY I Sbjct: 72 VIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +S+T++ QKEV +R+ A YG LS+ + + ++ + Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQYYSHPEIVVN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S+VI + P+ + + KI + +F +RRKTL L GG Sbjct: 188 VPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTLANGLNNFGGM 247 Query: 248 NL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 L + G+ N+R E LS+ F +++NI+ Sbjct: 248 GLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284 >gi|291612514|ref|YP_003522671.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1] gi|291582626|gb|ADE10284.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1] Length = 264 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/264 (38%), Positives = 148/264 (56%), Gaps = 23/264 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 KK GQNFL+D NI+ I + ++EIG G G LT+ LL L V+ I++D Sbjct: 13 KKRFGQNFLVDQNIIADIVRAIRPEADDNMVEIGPGLGALTRPLLKHLNILHVVEIDRD- 71 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 I+ + + +P +++ I + DALK DF +++P+RI+ NLPYNI + LLF++ Sbjct: 72 ----IIARLKTDYPQDKIVIHEGDALKFDFA---TLAAPLRIVGNLPYNISSPLLFHF-- 122 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 AD + + + Q EV ER+ A ++P YGRLSV+ +R + D+ P F P+P Sbjct: 123 AD-YAARITDMHFMLQNEVVERMVAAPSTPEYGRLSVMLQYRFHMEKLIDVPPQSFRPAP 181 Query: 200 KVTSTVIHFIPHLNPIPC---CLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 KV S ++ I PIP C++ K+ AFG+RRKTLR +LK E L Q Sbjct: 182 KVDSAIVRMI----PIPAGEICVKDEALFAKVVSAAFGQRRKTLRNTLKNYLPEADLLQL 237 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI+ LRAENL + +F I N L+ Sbjct: 238 GIDPQLRAENLGVPEFALIANHLS 261 >gi|71279824|ref|YP_271174.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H] gi|119365017|sp|Q47VJ8|RSMA_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71145564|gb|AAZ26037.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H] Length = 301 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 154/283 (54%), Gaps = 23/283 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H KK GQNFL + ++ I ++ G +IEIG G G LT Sbjct: 1 MNDKKH-----LGHQA---KKRFGQNFLHNDAVISDIVDAINPEPGENLIEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + ++ A K+ V+E D+ L+ HP L I + DALK DF + P+ Sbjct: 53 EPVIE-RAGKLSVVELDRDLAHRLR----HHPFLAKDLTIYETDALKFDFSELATEEQPL 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI NLPYNI T L+F+ + T+ + + + QKEV ER+ A + YGRLS++T Sbjct: 108 RIFGNLPYNISTPLIFHLL---TFKDKVKDMHFMLQKEVVERMAAGPHCKAYGRLSIMTQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKT 236 ++ + + +I P F P+PKV S ++ IPH NP+ + +L + AF +RRKT Sbjct: 165 YQCQVFPVMEIGPEAFKPAPKVDSAIVRLIPHAHIENPVK-DINALNTVCLAAFNQRRKT 223 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +R + K+L E L + I+ NLR ENLS++++ ++ + + DN Sbjct: 224 IRNTFKKLITEAQLAELNIDANLRPENLSLDEYKKLADFIVDN 266 >gi|153206938|ref|ZP_01945756.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177'] gi|212219490|ref|YP_002306277.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154] gi|226729772|sp|B6J641|RSMA_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120577011|gb|EAX33635.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177'] gi|212013752|gb|ACJ21132.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154] Length = 258 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 8/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E D+ Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ S Sbjct: 66 LVAFLQKKYNQQKN-ITIYQNDALQFDFSSA-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P P+V Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 180 Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I L Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240 Query: 260 RAENLSIEDFCRITNIL 276 R + L++EDF +I+NIL Sbjct: 241 RPQELTVEDFVKISNIL 257 >gi|168182310|ref|ZP_02616974.1| dimethyladenosine transferase [Clostridium botulinum Bf] gi|237793398|ref|YP_002860950.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657] gi|259494242|sp|C3KXY4|RSMA_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|182674690|gb|EDT86651.1| dimethyladenosine transferase [Clostridium botulinum Bf] gi|229261997|gb|ACQ53030.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657] Length = 275 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL A Sbjct: 4 KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 63 KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNRLMENKDSIKLVANLPYYVT 121 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + ++ + Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCDTKIIRKV 178 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244 SP+ F P PKV S VI + L+ ++S K + + +F RRKTL SLK L Sbjct: 179 SPNCFIPRPKVDSIVIK-LDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI++ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273 >gi|299768749|ref|YP_003730775.1| dimethyladenosine transferase [Acinetobacter sp. DR1] gi|298698837|gb|ADI89402.1| dimethyladenosine transferase [Acinetobacter sp. DR1] Length = 270 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 137/255 (53%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G V+EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPE-RVPHPERLTIIEADALKYDFNELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P PKV Sbjct: 135 SK---VKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V +P+ PI E +L ++ F +RRKTLR SLK + ++ +AG+ Sbjct: 192 TSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMIADDGFEKAGVNPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ F + + Sbjct: 252 RPETLTLAQFVALAD 266 >gi|62178655|ref|YP_215072.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484893|sp|Q57TH0|RSMA_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62126288|gb|AAX63991.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713108|gb|EFZ04679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 273 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 150/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP ++L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGSKLTIYQQDAMTMNFGELSAQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267 >gi|262281588|ref|ZP_06059366.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202] gi|262256964|gb|EEY75704.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202] Length = 270 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G V+EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPE-RVPHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV +RITA+ N+ YGRLSV+ + + T +F++ F P PKV Sbjct: 135 SK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191 Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS V +P+ PI E +L ++ F +RRKTLR SLK + E+ +AG++ Sbjct: 192 TSAVFRLVPYEQKPIIAKDEKALARLVGHVFTQRRKTLRNSLKGMIAEDGFEKAGVDPMA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ F + + Sbjct: 252 RPETLTLTQFVALAD 266 >gi|295098565|emb|CBK87655.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 273 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 146/272 (53%), Gaps = 18/272 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73 H + +K GQNFL D ++ I + G ++EIG G LT+ +G R ++ Sbjct: 6 HQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEL 62 Query: 74 IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129 VIE D+ L+ HP +L I Q DA+ ++F + + P+R+ NLPYNI Sbjct: 63 TVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRVFGNLPYNI 118 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ S + + + QKEV R+ A NS YGRLSV+ + + + Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLE 175 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S V+ +PH P P L L +IT EAF +RRKT+R SL L Sbjct: 176 VPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRNSLGNLFTV 235 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++L + GI+ +RAEN+S+E +C++ N ++DN Sbjct: 236 DVLAELGIDPAMRAENISVEQYCKLANYISDN 267 >gi|226946690|ref|YP_002801763.1| dimethyladenosine transferase [Azotobacter vinelandii DJ] gi|226721617|gb|ACO80788.1| dimethyladenosine transferase [Azotobacter vinelandii DJ] Length = 272 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/262 (35%), Positives = 140/262 (53%), Gaps = 7/262 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I + ++EIG G G LT+ LL GAR + VI Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHPRADERLVEIGPGQGALTEGLLGSGAR-LDVI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D P+LK P R + Q DALK DF + +RI+ NLPYNI T L+F+ Sbjct: 64 ELDLDLIPLLKLKFGLEP-RFHLHQGDALKFDFARLCGTPHSLRIVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + QKEV ER+ A+ +GRLS++ + + +F++ P F Sbjct: 123 LLEHAG---LIRDMHFMLQKEVVERLAAEPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +PH P P + L++I +EAF +RRKTLR +LK L + AG Sbjct: 180 PPPKVDSAIVRLVPHETLPHPARDPALLERIVREAFNQRRKTLRNTLKGLLAATDIEAAG 239 Query: 255 IETNLRAENLSIEDFCRITNIL 276 ++ +LR E L + F R+ + L Sbjct: 240 VDGSLRPEQLDLAAFVRLADHL 261 >gi|117618457|ref|YP_855484.1| dimethyladenosine transferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166221642|sp|A0KGT8|RSMA_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117559864|gb|ABK36812.1| dimethyladenosine transferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 271 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/272 (36%), Positives = 142/272 (52%), Gaps = 16/272 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ +I + G ++EIG G LT+ + + K+ V Sbjct: 7 HMGHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVAS-QMDKMTV 65 Query: 76 IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGT 131 +E D+ L+ +HP +L +I+ DA++ DF P+RI NLPYNI T Sbjct: 66 VELDRDLAARLR----EHPTLKEKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNIST 121 Query: 132 RLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 L+F+ AD E + + QKEV R+ A S YGRLSV+T + + + ++ Sbjct: 122 PLIFHLCEFADRV----EDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEV 177 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P+PKV S V+ IPH NP + + L ++ E FG+RRKT+R S + Sbjct: 178 GPGAFKPAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDA 237 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L + GI+ NLR ENLS+E F I N L D Q Sbjct: 238 QLTELGIDGNLRPENLSLEQFVMIANWLADQQ 269 >gi|261493820|ref|ZP_05990334.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495045|ref|ZP_05991512.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309287|gb|EEY10523.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310523|gb|EEY11712.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 288 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 147/268 (54%), Gaps = 19/268 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+NI+ I + +G ++EIG G G LT+ + L K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGALTEPVAEL-VDKLTVVEIDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLL 134 L+ HP +L II+ DAL+ + +FN +R+ NLPYNI T L+ Sbjct: 74 LAERLR----HHPFLNQKLTIIEQDALRFNVRDYFNQLNLDEDSVRVFGNLPYNISTPLI 129 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + T+ + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 FHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLEVPPTA 186 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S V+ +P+ N +P + L ++T +AF +RRKTLR +L L L Sbjct: 187 FKPAPKVDSAVVRLVPY-NQLPYPAKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQLE 245 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 G++ RAENL+I D+ R+ N L DN Sbjct: 246 ALGVDLTARAENLTIADYVRLANWLHDN 273 >gi|34495576|ref|NP_899791.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC 12472] gi|88911348|sp|Q7P1U1|RSMA_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|34101431|gb|AAQ57800.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/267 (37%), Positives = 144/267 (53%), Gaps = 18/267 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQNFL D +++ I + VIEIG G G +T+ LL L V+ I Sbjct: 3 KHIPRKRFGQNFLQDASVIAGIVHAVNPQPDDIVIEIGPGLGAITKPLLARLKHLHVVEI 62 Query: 77 EKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 ++D I++ + ++HP ++L I DAL DF +P++I+ NLPYNI T LLF Sbjct: 63 DRD-----IIERLKAEHPADKLTIHAGDALAFDFASVS--EAPLKIVGNLPYNISTPLLF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S + + QKEV ER+ A+ ++ YGRL+V+ +R + + P F Sbjct: 116 HLASYGNR---VTDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFYMENILFVPPEAF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 +P PKV S V+ IP P C L+K+ +AF +RRKTLR +LK L L Sbjct: 173 WPPPKVDSAVVRMIP--APGRCGTARDEALLEKLVSQAFAQRRKTLRNNLKGLADAADLE 230 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 GI+ LR ENL +EDF R+ N L D Sbjct: 231 ALGIDPGLRPENLPVEDFVRLANHLHD 257 >gi|226947305|ref|YP_002802396.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto] gi|259494243|sp|C1FQ40|RSMA_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226840947|gb|ACO83613.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto] Length = 275 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL A Sbjct: 4 KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 63 KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVT 121 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + ++ + Sbjct: 122 TPIISRLL---TEKCNFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244 SP+ F P PKV S VI + L+ ++S K + + +F RRKTL SLK L Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI++ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273 >gi|37524611|ref|NP_927955.1| dimethyladenosine transferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|62900562|sp|Q7N8V7|RSMA_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|36784035|emb|CAE12904.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 272 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 155/285 (54%), Gaps = 20/285 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ IA + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIAAAINPQPGQAVLEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPI 119 + +G R K+ V+E D+ L+ + Q ++L IIQ DA+ V+F + P+ Sbjct: 53 E---PVGERMDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGKPL 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ S + + + QKEV R+ A S +GRLSV+ Sbjct: 109 RVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKTFGRLSVMAQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237 + + + ++ P F P+PKV S V+ +PH + P P + L +IT +AF +RRKT+ Sbjct: 166 YYCQVIPVLEVPPTAFTPAPKVDSAVVRLVPHKSIPHPVKNIRMLSRITTQAFNQRRKTI 225 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 R SL L L + GI+ + RAEN+S+E +C++ N L++ ++ Sbjct: 226 RNSLGDLFTVEQLTELGIDPSTRAENISVEQYCKMANWLSEQPEM 270 >gi|88606758|ref|YP_505210.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ] gi|122064279|sp|Q2GK91|RSMA_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|88597821|gb|ABD43291.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ] Length = 269 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 141/258 (54%), Gaps = 8/258 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ F+LD I +KI +G L+ VIE+G G G +TQ +L R++ IEKD++ Sbjct: 9 KKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRLTAIEKDRR 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 I + H + I +D L V+ E+ + SP+++I+NLPYNI LL + Sbjct: 69 LSNIHSKLKEAHA-EYDCIFEDILDVNIEQLLS-QSPLKMISNLPYNISVILLLKLLP-- 124 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + +E L L+FQKEV +RI AQ N+ Y LS+L + D P +F PSPKV Sbjct: 125 -YIHRFEKLILMFQKEVADRIVAQPNTKSYSILSILVQLLCDVRKVEDFPPEIFSPSPKV 183 Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETN 258 S+VI P L+P S ++ ++ F RRKT+R SLK + L I+ N Sbjct: 184 YSSVIEITPLLSPRFSVDNSYFAQVLKKLFHCRRKTIRNSLKSCIKDADALFIGCNIDPN 243 Query: 259 LRAENLSIEDFCRITNIL 276 RAE+L+IE C +TN L Sbjct: 244 ARAESLTIEQLCSLTNAL 261 >gi|330830999|ref|YP_004393951.1| ribosomal RNA small subunit methyltransferase A [Aeromonas veronii B565] gi|328806135|gb|AEB51334.1| Ribosomal RNA small subunit methyltransferase A [Aeromonas veronii B565] Length = 264 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 141/266 (53%), Gaps = 16/266 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ +I + G ++EIG G LT+ + K+ V+E D+ Sbjct: 6 RKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVAA-QMDKMTVVELDRD 64 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNW 137 L+ +HP ++L +I+ DA++ DF P+RI NLPYNI T L+F+ Sbjct: 65 LAARLR----EHPTLKDKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNISTPLIFHL 120 Query: 138 IS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 AD E + + QKEV R+ A S YGRLSV+T + + + ++ P F Sbjct: 121 CEFADRV----EDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEVGPGAFK 176 Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+PKV S V+ IPH NP + + L ++ E FG+RRKT+R S + L + G Sbjct: 177 PAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDAQLTELG 236 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 I+ NLR ENLS+E F I N L D Q Sbjct: 237 IDGNLRPENLSLEQFVMIANWLADQQ 262 >gi|16763480|ref|NP_459095.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|20141600|sp|Q56016|RSMA_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|16418587|gb|AAL19054.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312911060|dbj|BAJ35034.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 273 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKEYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267 >gi|307824413|ref|ZP_07654638.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96] gi|307734397|gb|EFO05249.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96] Length = 282 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 32/284 (11%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL D NI+ I S + G +EIG G G LT+ LL G R + V+E D+ Sbjct: 5 PRKRFGQNFLHDHNIIYNIISSIQARPGQHWVEIGPGQGALTEPLLNEGVR-LDVVELDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-----------------------FNISS 117 +L++ Q+PN L+I DAL+ DF Sbjct: 64 DLVVLLREKFKQYPN-LQIHSADALRFDFSSLAAGGXXXXXXXXARKAPEGARAGIARDE 122 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +R+I NLPYNI T L+F+ + E + + QKEV +RI A S YGRLSV+ Sbjct: 123 KLRVIGNLPYNISTPLMFHLLDNAYC---IEDMHFMLQKEVVDRICAAPGSKKYGRLSVM 179 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRR 234 + ++FD+ P F P+P+V S ++ +PH P P + L ++ +AF +RR Sbjct: 180 MQYYCATELLFDVPPESFDPAPQVMSAIVRLVPHQQP-PVAVNDMSKLNRVVTQAFSQRR 238 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTLR SLK+L E + GI+ LRAE++S+ +F R++N+L + Sbjct: 239 KTLRNSLKKLITEEEIVALGIDPTLRAESISLAEFARLSNLLQE 282 >gi|154707299|ref|YP_001425385.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111] gi|226729774|sp|A9KGZ8|RSMA_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|154356585|gb|ABS78047.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111] Length = 258 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 139/257 (54%), Gaps = 8/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E D Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDGD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ S Sbjct: 66 LVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P P+V Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 180 Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I L Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240 Query: 260 RAENLSIEDFCRITNIL 276 R + L++EDF +I+NIL Sbjct: 241 RPQELTVEDFVKISNIL 257 >gi|118600894|sp|Q4UMV1|RSMA_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 239 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 132/231 (57%), Gaps = 7/231 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L + Sbjct: 10 ASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPASLT 69 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE D++ P+L +I +PN L II+ DALK++ + II+NLPY+IGT L+ Sbjct: 70 VIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLG--YDKVTIISNLPYHIGTELV 126 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 W+ ++TL+ QKEV ERI A ++ YGRLSV+ TK FD++P Sbjct: 127 IRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKVEKCFDVAPTA 183 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL 244 F+P PKV S ++ IP NP L +++IT+ AF RRK ++ SLK L Sbjct: 184 FYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNL 234 >gi|311696169|gb|ADP99042.1| dimethyladenosine transferase [marine bacterium HP15] Length = 276 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 142/257 (55%), Gaps = 8/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++I + ++EIG G G LT+ +L + K+ V+E D+ Sbjct: 10 RKRFGQNFLHDPGVIEQIIRAINPKPDDAIVEIGPGLGALTEEILAVNP-KLQVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+L+ +P I + DALK DF + + P+RII NLPYNI T L+F+ +S Sbjct: 69 LIPVLRTKFFNYPE-FRIHEADALKFDFSQLM-VDRPLRIIGNLPYNISTPLIFHLLSQA 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +R+ A +YGRL ++T + + +F++ P F P+PKV Sbjct: 127 G---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGAFRPAPKV 183 Query: 202 TSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +PH P P L +L+ + + AF RRKTLR++L + L GI L Sbjct: 184 DSAIVRLVPHKTLPHPAKDLTTLQAVVRTAFNARRKTLRKALGGMVSAEQLRSLGINDGL 243 Query: 260 RAENLSIEDFCRITNIL 276 R ENL++ DF I ++L Sbjct: 244 RPENLALADFVAIADLL 260 >gi|194446536|ref|YP_002039320.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226732621|sp|B4T6L6|RSMA_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194405199|gb|ACF65421.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 273 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLDNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267 >gi|300724851|ref|YP_003714176.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297631393|emb|CBJ92090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Xenorhabdus nematophila ATCC 19061] Length = 269 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 154/290 (53%), Gaps = 32/290 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H H+ +K GQNFL D I+ I ++ G V+EIG G G LT Sbjct: 1 MNNKVHQ-----GHHA---RKRFGQNFLTDQFIIHSIVDAMNPQIGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFF- 113 + +G R K+ V+E D +D++++ HP ++L IIQ DA+ VDF + Sbjct: 53 E---PVGERMDKMTVVELD-------RDLAARLHVHPKLKDKLTIIQQDAMTVDFGQIAK 102 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +RI NLPYNI T L+F+ S + ++ + QKEV R+ A S YGR Sbjct: 103 ERGQSLRIFGNLPYNISTPLMFHLFS---YTDAIADMSFMLQKEVVNRLVAGPGSKAYGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 LSV+ + + + ++ P F P+PKV S V+ IPH P P + L +IT +AF Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKTIPHPVHDIRILARITTQAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +RRKT+R SL + L + G++ RAEN+S+E +C++ N L+ + Sbjct: 220 QRRKTIRNSLSHIFSVEQLSELGVDPGTRAENISVEQYCKMANWLSSQSE 269 >gi|290474828|ref|YP_003467708.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Xenorhabdus bovienii SS-2004] gi|289174141|emb|CBJ80928.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Xenorhabdus bovienii SS-2004] Length = 274 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 155/292 (53%), Gaps = 32/292 (10%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H HY +K GQNFL D I++ I ++ G ++EIG G G LT Sbjct: 1 MNNKVHQ-----GHYA---RKRFGQNFLTDQFIIESIVDAMNPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFF- 113 + +G R K+ V+E D +D++++ HP ++L IIQ DA+ VDF + Sbjct: 53 E---PVGERMDKMTVVELD-------RDLAARLHVHPKLKDKLTIIQQDAMTVDFGQLAK 102 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + +R+ NLPYNI T L+F+ S + ++ + QKEV R+ A YGR Sbjct: 103 DQGQSLRVFGNLPYNISTPLMFHLFS---YADAIADMSFMLQKEVVNRLVAGPGCKAYGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231 LSV+ + + + ++ P F P+PKV S ++ +PH P P + L ++T +AF Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFTPAPKVDSAIVRLMPHKAMPYPVKDIRMLARVTTQAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 +RRKT+R SL L L + G++ RAEN+S+E +C++ + L+ A Sbjct: 220 QRRKTIRNSLGDLFSVEQLSELGVDPGTRAENISVEQYCKMASWLSSQAKTA 271 >gi|148378088|ref|YP_001252629.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 3502] gi|148287572|emb|CAL81637.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 3502] Length = 278 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 105/284 (36%), Positives = 158/284 (55%), Gaps = 16/284 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN + K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT Sbjct: 1 MNN--MNTKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A++V IE D PIL++ ++ N +I DALK+DF + I+++ Sbjct: 59 KELLE-RAKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + Sbjct: 117 ANLPYYVTTPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239 ++ +SP+ F P PKV S VI + L+ ++S K + + +F RRKTL Sbjct: 174 NTKIIRKVSPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWN 232 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 SLK L EN +AGI+ R E LSIE+F ++++ + D Sbjct: 233 SLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 276 >gi|157147529|ref|YP_001454848.1| dimethyladenosine transferase [Citrobacter koseri ATCC BAA-895] gi|166221659|sp|A8ALP9|RSMA_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157084734|gb|ABV14412.1| hypothetical protein CKO_03329 [Citrobacter koseri ATCC BAA-895] Length = 273 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 150/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ ++F + I Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSEKIG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L + GI+ LRAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVEVLTELGIDPALRAENISVAQYCQMANYLSEN 267 >gi|16759085|ref|NP_454702.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140635|ref|NP_803977.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412361|ref|YP_149436.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161612426|ref|YP_001586391.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550727|ref|ZP_02344484.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167989953|ref|ZP_02571053.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230359|ref|ZP_02655417.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243503|ref|ZP_02668435.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262232|ref|ZP_02684205.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820928|ref|ZP_02832928.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450226|ref|YP_002044058.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470287|ref|ZP_03076271.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249198|ref|YP_002145074.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263010|ref|ZP_03163084.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361298|ref|YP_002140933.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244097|ref|YP_002214042.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389272|ref|ZP_03215884.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926662|ref|ZP_03217864.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351430|ref|YP_002225231.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855603|ref|YP_002242254.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161029|ref|ZP_03346739.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427533|ref|ZP_03360283.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648900|ref|ZP_03378953.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224581932|ref|YP_002635730.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911148|ref|ZP_04654985.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826183|ref|ZP_06545295.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|27151585|sp|Q8Z9J7|RSMA_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900478|sp|Q5PDD9|RSMA_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028815|sp|A9MYM4|RSMA_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732616|sp|B5F771|RSMA_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732617|sp|B5FI34|RSMA_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732618|sp|B5R1S8|RSMA_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732619|sp|B5RGC2|RSMA_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732620|sp|B4TJ47|RSMA_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732622|sp|B5BL27|RSMA_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807882|sp|C0Q5E7|RSMA_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|25286076|pir||AF0513 dimethyladenosine transferase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501375|emb|CAD01246.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136259|gb|AAO67826.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126618|gb|AAV76124.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161361790|gb|ABX65558.1| hypothetical protein SPAB_00115 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408530|gb|ACF68749.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456651|gb|EDX45490.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092773|emb|CAR58198.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212901|gb|ACH50298.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241265|gb|EDY23885.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938613|gb|ACH75946.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606370|gb|EDZ04915.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323327|gb|EDZ08522.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271211|emb|CAR35999.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324333|gb|EDZ12172.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331535|gb|EDZ18299.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335041|gb|EDZ21805.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337400|gb|EDZ24164.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342515|gb|EDZ29279.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348868|gb|EDZ35499.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707406|emb|CAR31679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466459|gb|ACN44289.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245323|emb|CBG23111.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991761|gb|ACY86646.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156719|emb|CBW16193.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320084328|emb|CBY94121.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222340|gb|EFX47412.1| Dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615911|gb|EFY12828.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620696|gb|EFY17556.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623953|gb|EFY20790.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627401|gb|EFY24192.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630708|gb|EFY27472.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638072|gb|EFY34773.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640558|gb|EFY37209.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647698|gb|EFY44183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648048|gb|EFY44515.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656920|gb|EFY53206.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657369|gb|EFY53641.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663689|gb|EFY59889.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666522|gb|EFY62700.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672319|gb|EFY68431.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676369|gb|EFY72440.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679538|gb|EFY75583.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686133|gb|EFY82117.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323128408|gb|ADX15838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194977|gb|EFZ80163.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200114|gb|EFZ85201.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201065|gb|EFZ86134.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209462|gb|EFZ94395.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212286|gb|EFZ97110.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216591|gb|EGA01317.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222470|gb|EGA06840.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225781|gb|EGA10001.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228678|gb|EGA12807.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236708|gb|EGA20784.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239791|gb|EGA23838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242161|gb|EGA26190.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249414|gb|EGA33330.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252251|gb|EGA36102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256658|gb|EGA40388.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261308|gb|EGA44895.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265512|gb|EGA49008.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271700|gb|EGA55118.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326621786|gb|EGE28131.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626453|gb|EGE32796.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987042|gb|AEF06025.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 273 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267 >gi|168464366|ref|ZP_02698269.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632741|gb|EDX51195.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 273 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRALAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267 >gi|122095936|sp|Q1A705|TFB1M_HARVE RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|83032436|gb|ABB97064.1| mitochondrial transcription factor B-like protein [Hartmannella vermiformis] Length = 343 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 150/302 (49%), Gaps = 53/302 (17%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ + QNFLLDLNI KI SSG L TVIE+G GPG LT+ +L GA+K++VIEKD++ Sbjct: 23 KQQLSQNFLLDLNITDKIVRSSGDLTNKTVIEVGPGPGGLTRSILKAGAKKLVVIEKDRR 82 Query: 82 FFPIL---------------------------KDISSQHPN--RLEIIQDDALKVDFEKF 112 F P L K S PN R++I+ +D L+VD ++ Sbjct: 83 FLPALEVLRHAAGNIDGSPWEEAFLTKSEMDAKRYMSYAPNKSRMQIVMNDVLRVDEQEI 142 Query: 113 FN-----ISS----------PIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTL 152 I S PI II NLP+ I T L W+ + L Sbjct: 143 LQHIHAPIDSNDKTQWENMAPITIIGNLPFAISTELTIKWLKQIQGRHGAFRFGRAEFIL 202 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 +FQKEV +R+ A + Y RL+V+T + DI F P P V ++++ +P + Sbjct: 203 MFQKEVADRLIANPGTKQYSRLTVMTQQLCSVKKLSDIPGSAFVPKPDVDASLVSMVPRV 262 Query: 213 NPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIED 268 P+ + +L+ + ++ FG+RRK + S+K LG E LL +A I+ LR E L++ Sbjct: 263 TPLGVNVPTPTLEYVCRQVFGQRRKMINNSVKTLGPEAEILLARAHIDPTLRPEQLTVPQ 322 Query: 269 FC 270 +C Sbjct: 323 WC 324 >gi|94499972|ref|ZP_01306507.1| dimethyladenosine transferase [Oceanobacter sp. RED65] gi|94427830|gb|EAT12805.1| dimethyladenosine transferase [Oceanobacter sp. RED65] Length = 266 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 7/263 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D N+++ I +S G ++EIG G G +T+ LL ++ V+E D+ Sbjct: 6 RKRFGQNFLHDPNVIRNIVKSIRPKVGDRIVEIGPGMGAITEELLDATEGELDVVELDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISA 140 P LK H I + DALK DF +RI+ NLPYNI T L+F+ +S Sbjct: 66 LIPGLKVKFFNHKG-FRIHESDALKFDFATLKQAPEEQLRIVGNLPYNISTPLIFHLLS- 123 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + + + QKEV +R+ A +YGRLS++ + + MFD+ P F P+PK Sbjct: 124 --YSGLVKDMHFMLQKEVVQRLAAGPGDNNYGRLSIMAQYYCQVQHMFDVGPGAFKPAPK 181 Query: 201 VTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S ++ +PH + P P ++ ++I +E+F RRKTLR +LK+ L + GI+ Sbjct: 182 VDSAIVRMVPHQDLPYPVKDHKTFERIVRESFAMRRKTLRNNLKKTISSEELEKLGIDPA 241 Query: 259 LRAENLSIEDFCRITNILTDNQD 281 LR E L + ++ RI + + + D Sbjct: 242 LRPERLGLPEYTRIADYIYERAD 264 >gi|325276041|ref|ZP_08141856.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas sp. TJI-51] gi|324098826|gb|EGB96857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas sp. TJI-51] Length = 267 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 145/265 (54%), Gaps = 7/265 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ V+ Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAIHAKPGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+F+ Sbjct: 64 ELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNRLGVPPRSLKVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +PH + P P + L+++ ++AF +RRKTLR ++K L + AG Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPAKDAQLLERVVRDAFNQRRKTLRNTMKGLLDSAAIEAAG 239 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 ++ +LR E L + F R+ + L D Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQ 264 >gi|168234845|ref|ZP_02659903.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734867|ref|YP_002113107.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226732623|sp|B4TWT6|RSMA_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194710369|gb|ACF89590.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291958|gb|EDY31308.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 273 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSTQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267 >gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1] gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1] Length = 296 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 13/272 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L + + KK GQNFL+D NILKKI ++ ++EIG G G+LTQ L A + Sbjct: 23 LLEQHGVKLKKKWGQNFLVDENILKKIISAADVQKSDRILEIGPGIGSLTQKLAE-NASR 81 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V+ +E D + P+L++ +++ N +EII DA+ D P++++ANLPYN+ T Sbjct: 82 VLTVEIDTRLIPVLRETLAEYDN-VEIIHGDAMDFDPAPVCE-EGPVKLVANLPYNVATP 139 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 LL+ W+ D+ F L + QKEV ERI A+ S YG LSV+ + + + FD+ Sbjct: 140 LLYRWLK-DSRNCF-SRLVCMVQKEVAERIVAKPGSKAYGTLSVICNYAARCEIAFDVPR 197 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR---LGGE 247 VFFP P V+S V+ IP+ P + K+ + F +RRKTL +L L E Sbjct: 198 TVFFPRPDVSSAVVQLIPYHVPAEDVADDAFFFKVVEAVFAQRRKTLLNTLNAAFPLTKE 257 Query: 248 NL---LHQAGIETNLRAENLSIEDFCRITNIL 276 L I+ + R E L++++F +++ +L Sbjct: 258 QLTAVCSAVEIDLSRRGETLTLQEFAKLSRVL 289 >gi|283783840|ref|YP_003363705.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Citrobacter rodentium ICC168] gi|282947294|emb|CBG86839.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Citrobacter rodentium ICC168] Length = 273 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 148/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ ++F + + Sbjct: 53 E---PVGERLDRLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L + G++ +RAEN+S+ +CR+ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTELGVDPAMRAENISVAQYCRMANYLAEN 267 >gi|91762164|ref|ZP_01264129.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1002] gi|91717966|gb|EAS84616.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1002] Length = 262 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 149/264 (56%), Gaps = 11/264 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK +GQNFL+D +L+KI S + V+EIG G GNLT +L +K+ V+EK Sbjct: 3 IKAKKSLGQNFLIDREVLEKIV-SITDITNKEVLEIGPGSGNLTTYILKKKPKKLYVVEK 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D +LK+ + ++II DD LKV + + + NLPYNI T +L WI Sbjct: 62 DDDLAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI 116 Query: 139 SADTWPPFW-ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + FW +SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+ + DI P F P Sbjct: 117 -LNIGSNFWFDSLVLMFQKEVADRIISKFNNSNYGRLSILSSWKLNVKKILDIKPQSFSP 175 Query: 198 SPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254 PK+ S+++ F P N ++L+KIT+ F +RRK L++ ++ G+ + + G Sbjct: 176 RPKIDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFG 235 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 I+ NLR +NL E + ++ D Sbjct: 236 IDLNLRPQNLEPEVYFKLVKEYED 259 >gi|322514872|ref|ZP_08067890.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976] gi|322119176|gb|EFX91321.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976] Length = 289 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/268 (36%), Positives = 147/268 (54%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+N++ I + +G ++EIG G G LT+ + K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAE-QVDKLTVVELDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGTRL 133 L+ HP ++L II+ DAL+ +F ++F N S IR+ NLPYNI T L Sbjct: 74 LAGRLR----HHPFLNHKLTIIEQDALRFNFREYFESLELNESEGIRVFGNLPYNISTPL 129 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLEVPPT 186 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S V+ +PH + P P + L +T +AF +RRKTLR +L L L Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNCVTTQAFNQRRKTLRNALSTLFSPEQLE 246 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 I+ N RAENLSI D+ R+ N L DN Sbjct: 247 ALNIDLNARAENLSIADYARLANWLYDN 274 >gi|85058402|ref|YP_454104.1| dimethyladenosine transferase [Sodalis glossinidius str. 'morsitans'] gi|119365845|sp|Q2NVX6|RSMA_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|84778922|dbj|BAE73699.1| dimethyladenosine transferase [Sodalis glossinidius str. 'morsitans'] Length = 272 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D +I+ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF-FNISSP 118 + + ++ VIE D+ L + HP ++L I+Q DA+ VDF P Sbjct: 53 EPVAE-RVDEMTVIELDRDLAARL----ASHPFLQSKLNIVQKDAMTVDFAALSAERGQP 107 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +R+ NLPYNI T L+F+ S + + + QKEV R+ N YGRLSV+ Sbjct: 108 LRVFGNLPYNISTPLMFHLFS---YTHAIRDMHFMLQKEVVNRLVDGPNGKAYGRLSVMA 164 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKT 236 + + + ++ P F P+PKV S V+ +P+ P P L L +T AF +RRKT Sbjct: 165 QYYCQIIPVLEVPPASFRPAPKVDSAVVRLVPYATLPFPVKDLSKLATLTSLAFNQRRKT 224 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LR SL L L + GI+ LRAEN+S+E +CR+ N+L + Sbjct: 225 LRNSLGNLFSAQQLAEQGIDATLRAENVSVELYCRLANVLAE 266 >gi|300310043|ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Herbaspirillum seropedicae SmR1] gi|300072828|gb|ADJ62227.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 137/267 (51%), Gaps = 13/267 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +L I S ++EIG G +T +LL G R + V+E Sbjct: 2 KHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLE-GLRHLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNIGTRL 133 D+ LK RL + DALK DF I P +R++ NLPYNI + L Sbjct: 61 LDRDLVERLKKRFDA--ARLTVHSADALKFDFS---TIPVPEGRKLRVVGNLPYNISSPL 115 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ A+ P + + QKEV ER+ A+ S YGRLSV+ WR ++F + P Sbjct: 116 LFHL--AEIAPQVQDQ-HFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPT 172 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S ++ IP P+ C L+++ +AF +RRK +R + L E+ L Q Sbjct: 173 AFDPPPKVDSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQV 232 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ R E + +E F + N+L Q Sbjct: 233 GIDPQARPEAVPMEQFVALANLLAARQ 259 >gi|271502083|ref|YP_003335109.1| dimethyladenosine transferase [Dickeya dadantii Ech586] gi|270345638|gb|ACZ78403.1| dimethyladenosine transferase [Dickeya dadantii Ech586] Length = 272 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 145/286 (50%), Gaps = 32/286 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPQPGQAMVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 + +G R + V+E D+ + P LKD +L IIQ DA+ VDF Sbjct: 53 ---IPVGERINRFTVVELDRDLAARLEVHPTLKD-------KLTIIQQDAMTVDFAALSQ 102 Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGR Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQAIHDMHFMLQKEVVNRLVAGPNSKAYGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231 LSV+ + + + ++ P F P+PKV S V+ +PH +P P L +IT EAF Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTASPYPAVDTRILSRITTEAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +RRKTLR SL L L ++ N RAEN++I +CR+ LT Sbjct: 220 QRRKTLRNSLGNLFTPEQLTALEVDPNTRAENVTIAQYCRLAEWLT 265 >gi|70727517|ref|YP_254433.1| dimethyladenosine transferase [Staphylococcus haemolyticus JCSC1435] gi|119365848|sp|Q4L3F0|RSMA_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68448243|dbj|BAE05827.1| ksgA [Staphylococcus haemolyticus JCSC1435] Length = 296 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 97/277 (35%), Positives = 149/277 (53%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK +GQNFL+D+NI+ KI ++S D +IE+G G G+LT+ L A Sbjct: 13 KALLDQFGFNFKKSLGQNFLVDVNIIHKIIDASEIDDNTGIIEVGPGMGSLTEQLAK-RA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +KV+ E DQ+ P+LK+ + + N + II +D LK D K + N I ++ANLP Sbjct: 72 KKVMSFEIDQRLIPVLKETLAPYDN-VTIINEDILKADIGKAVKTYLNDCDKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ AQ + YG LS++T + T+ + Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAQVGTKAYGSLSIVTQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQRETPLVSVDDEETFFKLAKAAFAQRRKTINNNYQNF 247 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H Q GI+ R E LSI+DF R+ Sbjct: 248 FKDGKKHKESILKWLEQTGIDPKRRGETLSIQDFARL 284 >gi|104773499|ref|YP_618479.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513494|ref|YP_812400.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|118600873|sp|Q1GBR1|RSMA_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122275736|sp|Q04C60|RSMA_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|103422580|emb|CAI97183.1| Dimethyladenosine transferase (16S rRNA dimethylase) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092809|gb|ABJ57962.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 296 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G G+LT+ LL G Sbjct: 15 AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73 Query: 72 KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121 KV E DQ IL + + Q R ++I D LK DF FF++S P+++ Sbjct: 74 KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ S YG LS+ + Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240 + ++ F P PKV S V+ P P + ++ + F +RRKTL + Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L E LL ++ R E L+I DF RI+ + + Sbjct: 251 LKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAE 293 >gi|153940692|ref|YP_001389445.1| dimethyladenosine transferase [Clostridium botulinum F str. Langeland] gi|259494245|sp|A7G9I5|RSMA_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|152936588|gb|ABS42086.1| dimethyladenosine transferase [Clostridium botulinum F str. Langeland] gi|295317550|gb|ADF97927.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613] Length = 275 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 102/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL A Sbjct: 4 KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLE-RA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 63 KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKESIKLVANLPYYVT 121 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + ++ + Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244 SP+ F P PKV S VI + L+ ++S K + + +F RRKTL SLK L Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|317046866|ref|YP_004114514.1| dimethyladenosine transferase [Pantoea sp. At-9b] gi|316948483|gb|ADU67958.1| dimethyladenosine transferase [Pantoea sp. At-9b] Length = 274 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 147/286 (51%), Gaps = 26/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H HY +K GQNFL D I+ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQKGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 + +G R ++ V+E D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDELTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFSALAREKG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A S YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +P+ P P + L +IT EAFG+RR Sbjct: 163 MAQYYCQVIPVLEVPPQSFTPPPKVDSAVVRLVPYAQPQHPVSDVRLLSRITTEAFGQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR SL L L I+ +LRAEN+S+ +C++ N L ++Q Sbjct: 223 KTLRNSLGHLFAAGALDALNIDASLRAENVSVAQYCQLANWLGNHQ 268 >gi|294634975|ref|ZP_06713492.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685] gi|291091574|gb|EFE24135.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685] Length = 271 Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 142/271 (52%), Gaps = 16/271 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL D ++ I + G V+EIG G G LT+ + K+ V Sbjct: 6 HQGHLARKRFGQNFLTDQFVIDSIVSAINPQPGQAVVEIGPGLGALTEPVADR-MDKMTV 64 Query: 76 IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGT 131 IE D+ L + S HP +L I Q DA+ VDF E P+R+ NLPYNI T Sbjct: 65 IELDRD----LAERLSTHPFISRKLTIRQQDAMSVDFGEMAREAGQPLRVFGNLPYNIST 120 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F+ S + + + QKEV R+ A +S YGRLSV+ + + + ++ Sbjct: 121 PLMFHLFS---YASAIGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVP 177 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P+PKV S V+ IPH +P + L +IT EAF +RRKT+R SL L Sbjct: 178 PSAFRPAPKVDSAVVRLIPHRE-LPHSVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSAE 236 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + GI+ RAE LS+ ++CR+ N L ++ Sbjct: 237 QLSELGIDPARRAETLSVAEYCRLANWLCEH 267 >gi|254480940|ref|ZP_05094186.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2148] gi|214038735|gb|EEB79396.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2148] Length = 264 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 7/256 (2%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL D +++ IA + S + ++EIG G G LT+ L++ G ++ VIE D+ Sbjct: 10 PRKRFGQNFLTDDSVIGGIAGAIASRESDHIVEIGPGQGALTEALVSSGC-QLDVIELDR 68 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L S H ++ DALK DF + +RI+ NLPYNI T L+F + Sbjct: 69 DLIAGLLAAFSIHKG-FKLHSADALKFDFSSLVDGDKKLRIVGNLPYNISTPLIFKLLEN 127 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 E + + Q EV ER+ AQ + +GRL ++T ++ + +FD+ P F P PK Sbjct: 128 AA---IIEDMHFMLQLEVVERLAAQPGNKTWGRLGIMTQYQCEVEHLFDVPPEAFNPPPK 184 Query: 201 VTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S ++ P+ +P P C L+K+ Q AF +RRKTLR +LK L + L GI+ Sbjct: 185 VQSAIVRLKPYQQSPWPACDGNQLRKVVQTAFAQRRKTLRNNLKGLINGDGLEALGIDPA 244 Query: 259 LRAENLSIEDFCRITN 274 RAE L + F ITN Sbjct: 245 ARAETLQLTQFITITN 260 >gi|156935428|ref|YP_001439344.1| dimethyladenosine transferase [Cronobacter sakazakii ATCC BAA-894] gi|166221663|sp|A7MIA7|RSMA_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|156533682|gb|ABU78508.1| hypothetical protein ESA_03287 [Cronobacter sakazakii ATCC BAA-894] Length = 273 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 150/286 (52%), Gaps = 28/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +DF + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMDFGELSQKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKR 233 + + + + ++ P F P PKV S V+ +PH P P ++ L+ ++T EAF +R Sbjct: 163 MAQYFCQVIPVLEVPPTAFTPPPKVDSAVVRLVPHATP-PHPVKELRLLSRLTTEAFNQR 221 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 RKT+R SL + +L GI+ +RAEN+S+ +C++ N L DN Sbjct: 222 RKTIRNSLGNVFSPEVLTSLGIDPAMRAENISVAQYCQMANYLADN 267 >gi|153931501|ref|YP_001382487.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 19397] gi|153937047|ref|YP_001386039.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall] gi|259494241|sp|A7FQA9|RSMA_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|152927545|gb|ABS33045.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 19397] gi|152932961|gb|ABS38460.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall] gi|322804353|emb|CBZ01903.1| dimethyladenosine transferase [Clostridium botulinum H04402 065] Length = 275 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 102/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL A Sbjct: 4 KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 63 KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVT 121 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + ++ + Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244 SP+ F P PKV S VI + L+ ++S K + + +F RRKTL SLK L Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|51594984|ref|YP_069175.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP 32953] gi|153948384|ref|YP_001402399.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP 31758] gi|170025788|ref|YP_001722293.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII] gi|186893985|ref|YP_001871097.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+] gi|62900509|sp|Q66EQ8|RSMA_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166987698|sp|A7FMC1|RSMA_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732643|sp|B2K487|RSMA_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732645|sp|B1JKY3|RSMA_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51588266|emb|CAH19873.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance [Yersinia pseudotuberculosis IP 32953] gi|152959879|gb|ABS47340.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP 31758] gi|169752322|gb|ACA69840.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII] gi|186697011|gb|ACC87640.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+] Length = 272 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 150/283 (53%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 + + AR + VIE D+ L + HP ++L I Q DA+KV+F + Sbjct: 53 E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFSELSEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ IPH+ P P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 223 KTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|161504790|ref|YP_001571902.1| dimethyladenosine transferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189028814|sp|A9MQG2|RSMA_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160866137|gb|ABX22760.1| hypothetical protein SARI_02914 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 273 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 148/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + + P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLGVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267 >gi|77461356|ref|YP_350863.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1] gi|118600888|sp|Q3K5T2|RSMA_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77385359|gb|ABA76872.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1] Length = 272 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I S + G ++EIG G G LT +L GA ++ Sbjct: 3 EQYQHKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + N + Q DALK DF + +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + P P L+++ +EAF +RRKTLR +LK+L + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 AG++ +LR E L + F R+ + L + Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAE 263 >gi|298373556|ref|ZP_06983545.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str. F0058] gi|298274608|gb|EFI16160.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str. F0058] Length = 262 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 105/273 (38%), Positives = 144/273 (52%), Gaps = 17/273 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGA 70 TILS ++ PKKY GQ+FL DL I ++IAE+ D I ++EIG+G G LTQ LL Sbjct: 5 TILSVQRVTPKKYFGQHFLKDLRIAERIAETIP--DNIKNILEIGSGTGALTQFLLKKND 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++ IE D++ L +H +L + +DD L DF++ F+ P I+ N PYNI Sbjct: 63 TNLLAIEIDKESCAYL----GEHYPQLRVFRDDFLTFDFDRIFD-DEPFGIVGNFPYNIS 117 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +LF + + PF+ + FQKEV ERI A + YG SVLT + +F + Sbjct: 118 TEILFKVLDNRSRIPFFAGM---FQKEVAERICATHGNKVYGITSVLTQAFYRTEYLFTV 174 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENL 249 S VF P PKV S VI C E L I + AF +RRKT+R SLK + Sbjct: 175 SEQVFVPPPKVKSAVIRLTRKEQQTLDCNERLFFSIVKTAFNQRRKTMRNSLKTFNAD-- 232 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + +LR E +S E F IT ++ NQ I Sbjct: 233 --LSDKTFDLRPEQISQEQFIEITKLI-QNQSI 262 >gi|331006688|ref|ZP_08329965.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989] gi|330419496|gb|EGG93885.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989] Length = 274 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 11/261 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D NI+ +I S + ++EIG G G +TQ L+ ++ VIE D+ Sbjct: 12 RKRFGQNFLTDQNIINRIVTSINAKPSDRLVEIGPGQGAITQQLIQ-ACPQLQVIELDRD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL +++P I Q DAL+ DF P+RI+ NLPYNI T L+F+ +S Sbjct: 71 LIPILLAQFAKYP-EFAIHQQDALRFDFATLMVEKQPLRIVGNLPYNISTPLIFHLLS-- 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV R+ A +YGRLS++ + + +F + P F P PKV Sbjct: 128 -YQDRIQDMHFMLQKEVVNRLVATAGEKNYGRLSIMVQYYCETEHLFAVPPECFDPQPKV 186 Query: 202 TSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG----I 255 S ++ PH L + + L + AF +RRKTLR +LK+L + L A + Sbjct: 187 DSAIVRLQPHKKLPYVANNVAHLSHLVNLAFQQRRKTLRNTLKQLADGDALQIAAEKLDL 246 Query: 256 ETNLRAENLSIEDFCRITNIL 276 +LR ENLS ED+ ++N L Sbjct: 247 NLSLRPENLSTEDYVNLSNTL 267 >gi|22127557|ref|NP_670980.1| dimethyladenosine transferase [Yersinia pestis KIM 10] gi|45443419|ref|NP_994958.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str. 91001] gi|108810076|ref|YP_653992.1| dimethyladenosine transferase [Yersinia pestis Antiqua] gi|108810531|ref|YP_646298.1| dimethyladenosine transferase [Yersinia pestis Nepal516] gi|145600397|ref|YP_001164473.1| dimethyladenosine transferase [Yersinia pestis Pestoides F] gi|150260471|ref|ZP_01917199.1| dimethyladenosine transferase [Yersinia pestis CA88-4125] gi|162421183|ref|YP_001605347.1| dimethyladenosine transferase [Yersinia pestis Angola] gi|165928081|ref|ZP_02223913.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937777|ref|ZP_02226338.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. IP275] gi|166008750|ref|ZP_02229648.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212108|ref|ZP_02238143.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401583|ref|ZP_02307077.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422020|ref|ZP_02313773.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426031|ref|ZP_02317784.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927690|ref|YP_002345565.1| dimethyladenosine transferase [Yersinia pestis CO92] gi|229836925|ref|ZP_04457090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Pestoides A] gi|229840380|ref|ZP_04460539.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842460|ref|ZP_04462615.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229900719|ref|ZP_04515843.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Nepal516] gi|270487910|ref|ZP_06204984.1| dimethyladenosine transferase [Yersinia pestis KIM D27] gi|294502587|ref|YP_003566649.1| dimethyladenosine transferase [Yersinia pestis Z176003] gi|27151586|sp|Q8ZIK5|RSMA_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600905|sp|Q1C0H5|RSMA_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600906|sp|Q1CMT2|RSMA_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221716|sp|A4TQD8|RSMA_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732644|sp|A9QZZ0|RSMA_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21960661|gb|AAM87231.1|AE013971_7 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis KIM 10] gi|45438288|gb|AAS63835.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str. 91001] gi|108774179|gb|ABG16698.1| dimethyladenosine transferase [Yersinia pestis Nepal516] gi|108781989|gb|ABG16047.1| dimethyladenosine transferase [Yersinia pestis Antiqua] gi|115346301|emb|CAL19172.1| dimethyladenosine transferase [Yersinia pestis CO92] gi|145212093|gb|ABP41500.1| dimethyladenosine transferase [Yersinia pestis Pestoides F] gi|149289879|gb|EDM39956.1| dimethyladenosine transferase [Yersinia pestis CA88-4125] gi|162353998|gb|ABX87946.1| dimethyladenosine transferase [Yersinia pestis Angola] gi|165914189|gb|EDR32805.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. IP275] gi|165919942|gb|EDR37243.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992089|gb|EDR44390.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206854|gb|EDR51334.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960157|gb|EDR56178.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048965|gb|EDR60373.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054954|gb|EDR64754.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682058|gb|EEO78150.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Nepal516] gi|229690770|gb|EEO82824.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696746|gb|EEO86793.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705868|gb|EEO91877.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Pestoides A] gi|262360617|gb|ACY57338.1| dimethyladenosine transferase [Yersinia pestis D106004] gi|262364563|gb|ACY61120.1| dimethyladenosine transferase [Yersinia pestis D182038] gi|270336414|gb|EFA47191.1| dimethyladenosine transferase [Yersinia pestis KIM D27] gi|294353046|gb|ADE63387.1| dimethyladenosine transferase [Yersinia pestis Z176003] gi|320016863|gb|ADW00435.1| dimethyladenosine transferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 272 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 150/283 (53%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 + + AR + VIE D+ L + HP ++L I Q DA+KV+F + Sbjct: 53 E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFSELSEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKTYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ IPH+ P P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 223 KTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|312871246|ref|ZP_07731344.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a] gi|312872808|ref|ZP_07732873.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1] gi|311091850|gb|EFQ50229.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1] gi|311093260|gb|EFQ51606.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a] Length = 295 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPIS 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|303256197|ref|ZP_07342213.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47] gi|331001253|ref|ZP_08324879.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT 11859] gi|302860926|gb|EFL84001.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47] gi|329568980|gb|EGG50776.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT 11859] Length = 274 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 147/269 (54%), Gaps = 13/269 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + +L H+K +K GQNFL D + KIAE+ +G +IEIG G LT+ L+ G Sbjct: 1 MAEVLKHHKA--RKRFGQNFLNDDFWINKIAEAVDPKEGQKIIEIGPGQAALTKELIA-G 57 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+ + +E D+ L+ + P +L +++ DALK D+ + F IR++ NLPYNI Sbjct: 58 AKHIYCVEIDRDLAAWLR--TKFTPEQLTVLEADALKFDW-RDFAAEEKIRVVGNLPYNI 114 Query: 130 GTRLLFNW--ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + LLF IS + QKEV +R+ A S YGRLSV+ + + + Sbjct: 115 SSPLLFKLSEISDRVV-----DQHFMLQKEVVDRMVAAPGSKAYGRLSVMLQRKYRMVKL 169 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 FD+ P F P+PKV S+V+ IP NP E+ ++ +F RRKTL+ +L + Sbjct: 170 FDVPPEAFTPAPKVMSSVVRMIPIQNPAEVDEETFHQVVAASFAMRRKTLKNNLAKWISP 229 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++ +AGI+ RAE++ +E+F R+ ++ Sbjct: 230 EMMEEAGIKPEQRAESVPLENFIRLARLV 258 >gi|296101215|ref|YP_003611361.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055674|gb|ADF60412.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 273 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/272 (35%), Positives = 146/272 (53%), Gaps = 18/272 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73 H + +K GQNFL D ++ I + G ++EIG G LT+ +G R ++ Sbjct: 6 HQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEL 62 Query: 74 IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129 VIE D+ L+ HP +L I Q DA+ ++F + + P+R+ NLPYNI Sbjct: 63 TVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRVFGNLPYNI 118 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ S + + + QKEV R+ A NS YGRLSV+ + + + Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYFCNVIPVLE 175 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S V+ +PH P P L L +IT EAF +RRKT+R SL L Sbjct: 176 VPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRNSLGNLFTV 235 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++L + GI+ +RAEN+S+E +C++ N +++N Sbjct: 236 DVLAELGIDPAMRAENISVEQYCKLANYISEN 267 >gi|71083413|ref|YP_266132.1| dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1062] gi|119365045|sp|Q4FMR0|RSMA_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71062526|gb|AAZ21529.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1062] Length = 262 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/261 (36%), Positives = 148/261 (56%), Gaps = 11/261 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL+D +L+KI S + V+EIG G GNLT +L +K+ V+EKD Sbjct: 6 KKSLGQNFLIDREVLEKIV-SITDITNKEVLEIGPGSGNLTTYILKKKPKKLYVVEKDDD 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +LK+ + ++II DD LKV + + + NLPYNI T +L WI + Sbjct: 65 LAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI-LN 118 Query: 142 TWPPFW-ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 FW +SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+ + DI P F P PK Sbjct: 119 IGSNFWFDSLVLMFQKEVADRIISEFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPRPK 178 Query: 201 VTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIET 257 + S+++ F P N ++L+KIT+ F +RRK L++ ++ G+ + + GI+ Sbjct: 179 IDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFGIDL 238 Query: 258 NLRAENLSIEDFCRITNILTD 278 NLR +NL + + ++ D Sbjct: 239 NLRPQNLEPDVYFKLVKEYED 259 >gi|42518291|ref|NP_964221.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533] gi|62900557|sp|Q74LI0|RSMA_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|41582575|gb|AAS08187.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533] gi|329666601|gb|AEB92549.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 152/286 (53%), Gaps = 20/286 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E DQ IL + Q +R +++ D LK +F + F ++S ++ Sbjct: 74 -KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKSVK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A+ + YG LS+ Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAKPKTKEYGPLSIAVQS 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239 R + ++ F P PKV S V+ P L P + + F +RRKTL Sbjct: 190 RMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMCFAQRRKTLAN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK L E L++ G++ +R E L++ F ++ ++L D Q Sbjct: 250 NLKTLIKDKDEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKDRQ 295 >gi|268318776|ref|YP_003292432.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785] gi|262397151|emb|CAX66165.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785] Length = 296 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 152/286 (53%), Gaps = 20/286 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQRGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E DQ IL + Q +R +++ D LK +F + F ++S ++ Sbjct: 74 -KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKSVK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A+ + YG LS+ Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAKPKTKEYGPLSIAVQS 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239 R + ++ F P PKV S V+ P L P + + F +RRKTL Sbjct: 190 RMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMCFAQRRKTLAN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK L E L++ G++ +R E L++ F ++ ++L D Q Sbjct: 250 NLKTLIKDKDEREKLINDLGLDARVRPEELTLNQFVQLAHLLKDRQ 295 >gi|293392900|ref|ZP_06637217.1| dimethyladenosine transferase [Serratia odorifera DSM 4582] gi|291424434|gb|EFE97646.1| dimethyladenosine transferase [Serratia odorifera DSM 4582] Length = 272 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 148/283 (52%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPQPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 + +GAR ++ VIE D+ L + HP ++L I Q DA+ V+F + Sbjct: 53 E---PVGARMDRMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMTVNFSEMAEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH L P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPTAFAPPPKVDSAVVRLVPHVLMPHTVSDVRMLSRITTQAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R SL L L + G++ LRAEN+S+ +C++ N L+ Sbjct: 223 KTVRNSLGDLFTPEQLSELGVDPTLRAENISVAQYCQLANWLS 265 >gi|168177414|ref|ZP_02612078.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916] gi|182671129|gb|EDT83103.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916] Length = 275 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL A Sbjct: 4 KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +++ IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 63 KEIYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVT 121 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + ++ + Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244 SP+ F P PKV S VI + L+ ++S K + + +F RRKTL SLK L Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|325125130|gb|ADY84460.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 296 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G G+LT+ LL G Sbjct: 15 AIVNRYFVHAKKNLGQNFLVDLDAVRGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73 Query: 72 KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121 KV E DQ IL + + Q R ++I D LK DF FF++S P+++ Sbjct: 74 KVTAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ S YG LS+ + Sbjct: 134 VANLPYYITTPIIFNLLE---YSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240 + ++ F P PKV S V+ P P + ++ + F +RRKTL + Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L E LL + R E L+I DF RI+ + + Sbjct: 251 LKTLLPDKEDREKLLADLDLAPRQRPEQLAISDFIRISQAIAE 293 >gi|23097505|ref|NP_690971.1| dimethyladenosine transferase [Oceanobacillus iheyensis HTE831] gi|27151561|sp|P59155|RSMA_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|22775728|dbj|BAC12006.1| dimethyladenosine transferase (16S rRNA dimethylase) [Oceanobacillus iheyensis HTE831] Length = 294 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 151/284 (53%), Gaps = 19/284 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D+++L+ I +G IEIG G G LT+ L + A Sbjct: 14 KDILGKYHFTFKKSLGQNFLVDVSVLQNIIRHAGITKDTAAIEIGPGIGALTEQL-AIHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +V+ E DQ+ PIL+D ++ N + +I D LK D K F + ++ANLP Sbjct: 73 DQVVAFEIDQRLLPILQDTLGEYSN-VSVIHQDILKADVTKVIDEHFKEGQEVHVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L I D P SLT++ QKEV +R++ + NS YG LS+ + ++A + Sbjct: 132 YYITTPILMKLIR-DRLP--VTSLTVMIQKEVADRMSGEPNSKSYGSLSLAVQYYSEAKV 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + ++ VF P P V S+++ P+ E +I Q +F +RRKTL+ +L R Sbjct: 189 VMNVPKQVFMPQPNVDSSILQLTMRKQPPVEVTDEDFFFEIIQASFAQRRKTLKNNLTRF 248 Query: 245 GG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +++L +AG+E R E+L++E+F ++ N Q Sbjct: 249 FKGVHDKEKIDHILQEAGVEGIRRGESLTMEEFAQVANTFYQYQ 292 >gi|206578528|ref|YP_002240485.1| dimethyladenosine transferase [Klebsiella pneumoniae 342] gi|288937185|ref|YP_003441244.1| dimethyladenosine transferase [Klebsiella variicola At-22] gi|290512606|ref|ZP_06551972.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55] gi|226732590|sp|B5Y1Z4|RSMA_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|206567586|gb|ACI09362.1| dimethyladenosine transferase [Klebsiella pneumoniae 342] gi|288891894|gb|ADC60212.1| dimethyladenosine transferase [Klebsiella variicola At-22] gi|289774947|gb|EFD82949.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55] Length = 273 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 151/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ ++F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHRTMPYPVKEVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L + G++ +RAEN+S+E +C++ N L++N Sbjct: 223 KTIRNSLGNLFSVEVLTELGVDPAVRAENISVEQYCKMANWLSNN 267 >gi|116628883|ref|YP_814055.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323] gi|116094465|gb|ABJ59617.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323] Length = 298 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 154/287 (53%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+LT+ LL GA Sbjct: 16 QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGA 75 Query: 71 RKVIVIEKDQQFFPILKD-----ISSQHPN-RLEIIQDDALKVDFEK----FFNISSPIR 120 KV+ E DQ ILK+ I + N R +++ D LK +F K F +++ P++ Sbjct: 76 -KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANFTKDSDGFLDLNKPVK 134 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A + YG L++ Sbjct: 135 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAIPKTKEYGPLTIAVQS 191 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238 R + ++ F P PKV S V+ P L P + + + F +RRKTL Sbjct: 192 RMNVELAEEVKSTSFMPRPKVDSAVVVLTP-LTEKPNIDDYSFFDHVVKMCFAQRRKTLA 250 Query: 239 QSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK L E +++ G++ +R E L++ F + ++L D Q Sbjct: 251 NNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 297 >gi|190149692|ref|YP_001968217.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263000|ref|ZP_07544622.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226729747|sp|B3H0R3|RSMA_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189914823|gb|ACE61075.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871626|gb|EFN03348.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 289 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 146/268 (54%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+N++ I + +G ++EIG G G LT+ + K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAE-QVDKLTVVELDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133 L+ HP ++L II+ DAL+ +F ++F +R+ NLPYNI T L Sbjct: 74 LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPL 129 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S V+ +PH + P P + L ++T +AF +RRKTLR +L L L Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSPEQLE 246 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 I+ N RAENLSI D+ R+ N L DN Sbjct: 247 ALSIDLNARAENLSIADYARLANWLYDN 274 >gi|312963419|ref|ZP_07777901.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6] gi|311282225|gb|EFQ60824.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6] Length = 270 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/265 (34%), Positives = 141/265 (53%), Gaps = 7/265 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D ++ +I S + ++EIG G G LTQ LL G ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + N + Q DALK DF + +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + P P L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262 >gi|134093647|ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas arsenicoxydans] gi|226732588|sp|A4G256|RSMA_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|133737550|emb|CAL60593.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Herminiimonas arsenicoxydans] Length = 255 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/260 (35%), Positives = 137/260 (52%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +L I + T++EIG G +T++LL G ++ V+E Sbjct: 2 KHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLD-GVNQMHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136 D+ LK + P +L I DAL+ DF S +R++ NLPYNI + LLF+ Sbjct: 61 LDRDLVERLK--KTFDPKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P + + QKEV ER+ A+ S YGRLSV+ WR +MF + P F Sbjct: 119 LAE---MAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ IP P+PC L+++ +AF +RRK +R L + E L +AGI Sbjct: 176 PPPRVESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEAGIN 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 +R E +S+ + + N L Sbjct: 236 PQMRPETISLAQYVALANRL 255 >gi|315654032|ref|ZP_07906948.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195] gi|315488728|gb|EFU78374.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195] Length = 295 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|304413708|ref|ZP_07395152.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Candidatus Regiella insecticola LSR1] gi|304283799|gb|EFL92193.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Candidatus Regiella insecticola LSR1] Length = 280 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M NKSH SH I ++ GQNFL D +I+ I + + G ++EIG+G G LT Sbjct: 9 MKNKSHK-----SHQGHIARQRFGQNFLKDPHIIDSIVSAIHPIPGEAMVEIGSGLGVLT 63 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSP 118 + + + VIE D+ L ++HP +L I Q DA+ DF P Sbjct: 64 KPVAD-RIDHMTVIELDRDLAARL----AEHPTLKEKLTIYQQDAMNFDFSLLAEGAGQP 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +R+ NLPYNI T L+F+ + + + + QKEV R+ A ++ YGRL+V+ Sbjct: 119 LRVFGNLPYNISTPLMFHLFN---YTKIIRDMHFMLQKEVVNRLVAGPHNKAYGRLTVMA 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRK 235 + + + ++ P F P+PKV S V+ +PH NP+ L++IT +AF +RRK Sbjct: 176 QYYCQIIPIVEVPPEAFTPAPKVDSAVVRLVPHQQLPNPV-SDTRILRQITTQAFNQRRK 234 Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +R SL +L L + I+ N+RAENLS+ +CR+ N L+D Sbjct: 235 IIRNSLGKLFTAEQLTELDIDPNVRAENLSVAQYCRLANWLSD 277 >gi|255527800|ref|ZP_05394651.1| dimethyladenosine transferase [Clostridium carboxidivorans P7] gi|255508513|gb|EET84902.1| dimethyladenosine transferase [Clostridium carboxidivorans P7] Length = 278 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 152/282 (53%), Gaps = 12/282 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +S S K I+ Y K +GQNFL+D ++L+ I ++S VIEIG G G LT+ L Sbjct: 2 ESLSTKDIVKKYGFKFSKSLGQNFLIDNSVLQDIVDNSNVSKDDLVIEIGPGVGTLTKEL 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A+KV IE D PIL + + N E++ DALKVDF + +++ANL Sbjct: 62 LK-KAKKVYAIELDSDLIPILNE-ELKEFNNFELVHKDALKVDFNELIGEEKSTKVVANL 119 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + +ESLT++ QKEVGERI A+ ++ YG LS+L + Sbjct: 120 PYYVTTPIISKLLKENYK---FESLTIMIQKEVGERIAAKPSTKEYGALSILVQYYCDVE 176 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243 ++ +S F P PKV S VI L P E K+ + +F RRKTL LK Sbjct: 177 IVRKVSCDSFVPRPKVDSIVIKLTKLLEPKVKVKSKELFFKVVRSSFNMRRKTLWNGLKS 236 Query: 244 LG-GENLLHQAGIETNL----RAENLSIEDFCRITNILTDNQ 280 LG + L +A I+ N+ R E LS+E+F ++++ + + Q Sbjct: 237 LGMKKESLEKAFIDANIDLKRRGETLSLEEFAKLSDCIYELQ 278 >gi|238852850|ref|ZP_04643255.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4] gi|282852550|ref|ZP_06261892.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1] gi|311111301|ref|ZP_07712698.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22] gi|238834544|gb|EEQ26776.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4] gi|282556292|gb|EFB61912.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1] gi|311066455|gb|EFQ46795.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22] Length = 296 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 154/287 (53%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKD-----ISSQHPN-RLEIIQDDALKVDFEK----FFNISSPIR 120 KV+ E DQ ILK+ I + N R +++ D LK +F K F +++ P++ Sbjct: 74 -KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANFTKDSDGFLDLNKPVK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A + YG L++ Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAIPKTKEYGPLTIAVQS 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238 R + ++ F P PKV S V+ P L P + + + F +RRKTL Sbjct: 190 RMNVELAEEVKSTSFMPRPKVDSAVVVLTP-LTEKPNIDDYSFFDHVVKMCFAQRRKTLA 248 Query: 239 QSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK L E +++ G++ +R E L++ F + ++L D Q Sbjct: 249 NNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295 >gi|212636813|ref|YP_002313338.1| dimethyladenosine transferase [Shewanella piezotolerans WP3] gi|226732624|sp|B8CSX5|RSMA_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|212558297|gb|ACJ30751.1| Dimethyladenosine transferase [Shewanella piezotolerans WP3] Length = 270 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 151/283 (53%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDENVINRIVGAISPDNEHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + + G K+ V+E D+ LK HP ++LEI Q DAL DF++ + Sbjct: 53 EPVAS-GIDKLTVVELDKDLVERLK----THPTLKDKLEIHQGDALNFDFKQLVREDMQM 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ NLPYNI T L+F+ + + E++ + QKEV R++A + YGRL+V+ Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAQYIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237 + + + ++ P F P PKV S V+ +P+ P PC +E L+ +T AF RRKTL Sbjct: 165 YHCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKTKPFPCKDVEVLRHLTTTAFNMRRKTL 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R +LK + ++ Q I++ LR E +S++ + + N+ D Q Sbjct: 225 RNNLKHMLSDDEFAQLEIDSTLRPEQISVQQYVAMANLFIDKQ 267 >gi|116491525|ref|YP_811069.1| dimethyladenosine transferase [Oenococcus oeni PSU-1] gi|122276293|sp|Q04DR8|RSMA_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116092250|gb|ABJ57404.1| dimethyladenosine transferase [Oenococcus oeni PSU-1] Length = 292 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 157/280 (56%), Gaps = 18/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 +TIL+ Y + K +GQNFL+DLN+L++I + + TVIEIG G G+LT+ L A Sbjct: 14 RTILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V+ E D++ PIL + + N +EI+ D LK DF F + ++I+ANLPY I Sbjct: 73 KQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADF-SIFAKNQSLKIVANLPYYIT 130 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +LF +++ ++S+T++ QKEV R+ A S YG LS+ +R ++ + Sbjct: 131 TPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILPV 187 Query: 191 SPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F PSP V S ++ P N P E+L KI + +F RRK+L +L G+N Sbjct: 188 TRKSFMPSPNVDSAIVQLTPKENFQSFPHE-EALFKIIKASFAHRRKSLVNNLLYYFGKN 246 Query: 249 ---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + G + N+R E L++E++ ++ N L++N Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286 >gi|32034722|ref|ZP_00134853.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207883|ref|YP_001053108.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae L20] gi|303249761|ref|ZP_07335965.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252642|ref|ZP_07338805.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245229|ref|ZP_07527320.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247401|ref|ZP_07529448.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249621|ref|ZP_07531607.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251949|ref|ZP_07533850.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254176|ref|ZP_07536021.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256444|ref|ZP_07538226.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258640|ref|ZP_07540375.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260874|ref|ZP_07542560.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166221641|sp|A3MZB7|RSMA_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126096675|gb|ABN73503.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648610|gb|EFL78803.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651328|gb|EFL81480.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853873|gb|EFM86087.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856098|gb|EFM88254.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858319|gb|EFM90389.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860641|gb|EFM92653.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862876|gb|EFM94825.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865074|gb|EFM96975.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867297|gb|EFM99150.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869441|gb|EFN01232.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 289 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 146/268 (54%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+N++ I + +G ++EIG G G LT+ + K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAE-QVDKLTVVELDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133 L+ HP ++L II+ DAL+ +F ++F +R+ NLPYNI T L Sbjct: 74 LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPL 129 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S V+ +PH + P P + L ++T +AF +RRKTLR +L L L Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSPEQLE 246 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 I+ N RAENLSI D+ R+ N L DN Sbjct: 247 ALNIDLNARAENLSIADYARLANWLYDN 274 >gi|330812131|ref|YP_004356593.1| dimethyladenosine transferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380239|gb|AEA71589.1| putative dimethyladenosine transferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 272 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/265 (34%), Positives = 143/265 (53%), Gaps = 7/265 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 Y+ +K GQNFL D ++ +I S + ++EIG G G LT+ LL GA ++ V Sbjct: 4 QYQHRARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGA-QLDV 62 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ PIL + N + Q DALK DF + +R++ NLPYNI T L+F Sbjct: 63 VELDKDLVPILNQQFAGRSN-FSLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLIF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + +S + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 122 HLLSNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAF 178 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S ++ +PH + P P L+++ +EAF +RRKTLR +LK L + A Sbjct: 179 NPPPKVDSAIVRLVPHAVLPHPAKDHRMLERVVREAFNQRRKTLRNTLKLLLSSAEIEAA 238 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ +LR E L + F R+ + L++ Sbjct: 239 GVDGSLRPEQLDLAAFVRLADKLSE 263 >gi|308185629|ref|YP_003929760.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Pantoea vagans C9-1] gi|308056139|gb|ADO08311.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Pantoea vagans C9-1] Length = 273 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 146/286 (51%), Gaps = 26/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H HY +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHYA---RKRFGQNFLNDQYIINSIVSAIHPQRDEALVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLET----HPFLGPKLTIFQQDAMTFDFAALAQERG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A S YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCC-LESLKKITQEAFGKRR 234 + + + + ++ PH F P PKV S V+ +P P P + L +IT EAFG+RR Sbjct: 163 MAQYYCQVIPVLEVPPHSFTPPPKVDSAVVRLVPFAEPPHPVSDVRILSRITTEAFGQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR SL + L + I+ LRAEN+S+ +C++ N L ++Q Sbjct: 223 KTLRNSLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268 >gi|157374103|ref|YP_001472703.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3] gi|189028819|sp|A8FRV2|RSMA_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157316477|gb|ABV35575.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3] Length = 267 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 152/283 (53%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDGNVINRIVGAIAPDNDHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + G K+ V+E D+ LK +HP ++L+I Q DALK DF + + Sbjct: 53 EPVAN-GIDKLTVVELDKDLVERLK----EHPTLKHKLDIHQGDALKFDFSQLVEEGRQM 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V+ Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237 + + + ++ PH F P+PKV S V+ +P+ P PC ++ L+ +T AF RRKTL Sbjct: 165 YHCQVMPVLEVPPHSFTPAPKVDSAVVRLVPYKTKPWPCKDVDQLRHLTTTAFNMRRKTL 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R +LK + + GI+ LR E ++++ + + N++ D + Sbjct: 225 RNNLKHMISDEEFAALGIDATLRPEQITVQQYVAMANLVIDKK 267 >gi|325684673|gb|EGD26827.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 296 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G G+LT+ LL G Sbjct: 15 AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73 Query: 72 KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121 KV E DQ IL + + Q R ++I D LK DF FF++S P+++ Sbjct: 74 KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ S YG LS+ + Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240 + ++ F P PKV S V+ P P + ++ + F +RRKTL + Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L E LL + R E L+I DF RI+ + + Sbjct: 251 LKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293 >gi|170768489|ref|ZP_02902942.1| dimethyladenosine transferase [Escherichia albertii TW07627] gi|170122593|gb|EDS91524.1| dimethyladenosine transferase [Escherichia albertii TW07627] Length = 273 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L + GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSAEVLTEMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|70732937|ref|YP_262708.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5] gi|118600886|sp|Q4K4X5|RSMA_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68347236|gb|AAY94842.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5] Length = 270 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 7/264 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ +I S + ++EIG G G LT+ LL GA ++ V+ Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRMLEIGPGQGALTEGLLGSGA-QLDVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL + N + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLGAAPGSLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 123 LLQNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +PH + P P L++I +EAF +RRKTLR +LK L + AG Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPAKDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEAAG 239 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ +LR E L + F R+ + L D Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLAD 263 >gi|320532470|ref|ZP_08033295.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135315|gb|EFW27438.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str. F0337] Length = 364 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/270 (35%), Positives = 141/270 (52%), Gaps = 16/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P K +GQNF+ D +++I +S+G TV+EIG G G+LT LL GAR VI +E Sbjct: 79 IRPTKTLGQNFVHDAGTVRRIVKSAGVRPDDTVLEIGPGLGSLTLALLEAGAR-VIAVEI 137 Query: 79 D---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTR 132 D + P+ + D Q RL +I+ DAL + + + + P R++ANLPYN+ Sbjct: 138 DPALARALPVTVADRMPQAAGRLSLIEADALSITGPQSLDETGNPPTRLVANLPYNVAVP 197 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + A P ES+T++ Q EV +R+ A+ S YG S+ W A IS Sbjct: 198 VLLTALEAL---PSLESVTVMVQSEVADRLAAEPGSRTYGVPSLKAAWYAAARRTLTISR 254 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG----- 246 HVF+P P V S ++ + P E + + AF +RRKTLR++L +L G Sbjct: 255 HVFWPVPNVDSALVELVRRRPPATRATREQVFAVVDAAFAQRRKTLRKALAKLAGGADAA 314 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+ L AGI+ R E L I F + +L Sbjct: 315 ESALRAAGIDPARRGETLDITAFAALAEVL 344 >gi|182420084|ref|ZP_02951318.1| dimethyladenosine transferase [Clostridium butyricum 5521] gi|237669472|ref|ZP_04529452.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376121|gb|EDT73708.1| dimethyladenosine transferase [Clostridium butyricum 5521] gi|237654916|gb|EEP52476.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 281 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 153/285 (53%), Gaps = 16/285 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ K + + ++ Y K +GQNFL+D ++L I + + D +IEIG G G LT Sbjct: 1 MDLKDYKTQELVKKYNFKFSKSLGQNFLIDDSVLTDIVDGASVDDKDFIIEIGPGVGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + A+KV IE D PIL++ +H N ++I +DALKVDF ++++ Sbjct: 61 AKLL-MKAKKVTSIELDNDLIPILQEELGEHEN-FDLIHNDALKVDFNSLIGDEPSVKLV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + D + ++SLT++ QKEV ERI A+ N YG LSVL + Sbjct: 119 ANLPYYVTTPIIVKLLK-DGYN--FKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 +++ ++P F P PKV S VI P +N L + + + F RRKTL Sbjct: 176 NTSIVRRVAPSCFIPRPKVESIVIRLDRLEAPRVNVKDENL--MFALVRAGFNMRRKTLW 233 Query: 239 QSLK--RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 + K L E L ++GI+ RAE LSIE+F +++ + D Sbjct: 234 NATKTFNLSKEKLEEAFEKSGIDPKRRAETLSIEEFAHLSDCIYD 278 >gi|169830264|ref|YP_001716246.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator MP104C] gi|169637108|gb|ACA58614.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator MP104C] Length = 299 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 149/279 (53%), Gaps = 15/279 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ +L+ Y + P+K +GQNFL+ +L KI E++ VIEIG G G LT+ L Sbjct: 12 TGEVRRLLAEYGLKPRKSLGQNFLVAAGVLDKILEAAEVEKDEVVIEIGPGVGALTRRLA 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIAN 124 GAR V +E D + P+LK++ +R+ +I DALKVD+ + +++AN Sbjct: 72 EKGAR-VAAVEIDGRLIPLLKEVLGDLGDRVRLINADALKVDYGALLAEMGAGSFKVVAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I + + ++ A +E + L+ QKEV +R+TA + YG LSVL + T+A Sbjct: 131 LPYYITSPFVAGFLEAGYR---FERMVLMVQKEVADRMTAANGTESYGALSVLVAYHTEA 187 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLK 242 +++ +S H F+P P V S V+ + P L E +I + +FG+RRK L +L Sbjct: 188 DVVWRVSRHCFYPPPAVDSAVVRLMRRPAPAVTVLQPELFFRIVRASFGRRRKMLPNALA 247 Query: 243 -------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 R ++ AGI+ +R E L+ + F I + Sbjct: 248 GAVPGLDRETWVQIIESAGIDPRVRGETLTPDQFGLIAD 286 >gi|304396533|ref|ZP_07378414.1| dimethyladenosine transferase [Pantoea sp. aB] gi|304356042|gb|EFM20408.1| dimethyladenosine transferase [Pantoea sp. aB] Length = 273 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 147/286 (51%), Gaps = 26/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H HY +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQRDEALVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLET----HPFLGPKLTIFQQDAMTFDFAALAQERG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A + YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGNKTYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRR 234 + + + + ++ PH F P PKV S V+ +P+ P P + L +IT EAFG+RR Sbjct: 163 MAQYYCQIIPVLEVPPHSFTPPPKVDSAVVRLVPYAEPPYPVSDVRILSRITTEAFGQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR SL + L + I+ LRAEN+S+ +C++ N L ++Q Sbjct: 223 KTLRNSLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268 >gi|170755195|ref|YP_001779707.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra] gi|259494244|sp|B1ID54|RSMA_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169120407|gb|ACA44243.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra] Length = 275 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL A Sbjct: 4 KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLE-RA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL++ ++ N +I DALK++F + I+++ANLPY + Sbjct: 63 KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKINFNELMENKDSIKLVANLPYYVT 121 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + T ++SLT++ QKEV ERI A+ N YG L+VL + ++ + Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244 SP+ F P PKV S VI + L+ ++S K + + +F RRKTL SLK L Sbjct: 179 SPNSFIPKPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|292489394|ref|YP_003532281.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia amylovora CFBP1430] gi|292898387|ref|YP_003537756.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946] gi|291198235|emb|CBJ45341.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946] gi|291554828|emb|CBA22688.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia amylovora CFBP1430] gi|312173559|emb|CBX81813.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 275 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN++ H H+ +K GQNFL D I+ I + G V+EIG G G LT Sbjct: 1 MNSRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R + V+E D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDSMTVVELDRDLAARLQS----HPFLGPKLTIFQQDAMTFDFAALAQEKG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A S YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P+ + +L +IT EAFGKRR Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYAQPLHPVDDIRALSRITTEAFGKRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTLR SL L ++L + I+ LRAEN+++ +C++ N LT Sbjct: 223 KTLRNSLGHLFTTDVLAEMNIDPTLRAENITVAQYCQLANWLT 265 >gi|309808503|ref|ZP_07702402.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a] gi|308168331|gb|EFO70450.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a] Length = 295 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|309803693|ref|ZP_07697783.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d] gi|309804982|ref|ZP_07699040.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c] gi|309806700|ref|ZP_07700695.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b] gi|312874063|ref|ZP_07734098.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d] gi|325913223|ref|ZP_08175592.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B] gi|308164291|gb|EFO66548.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d] gi|308165742|gb|EFO67967.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c] gi|308166880|gb|EFO69064.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b] gi|311090403|gb|EFQ48812.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d] gi|325477487|gb|EGC80630.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B] Length = 295 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|24375138|ref|NP_719181.1| dimethyladenosine transferase [Shewanella oneidensis MR-1] gi|33516936|sp|Q8EB93|RSMA_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24349908|gb|AAN56625.1|AE015799_12 dimethyladenosine transferase [Shewanella oneidensis MR-1] Length = 268 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80 +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V+E D+ Sbjct: 12 RKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70 Query: 81 -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 Q P+LKD +L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 71 LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDQNLRPEQISVEQYVAMANMVCDKQ 267 >gi|189182934|ref|YP_001936719.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda] gi|189179705|dbj|BAG39485.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda] Length = 273 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/274 (36%), Positives = 151/274 (55%), Gaps = 12/274 (4%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQML 65 L T+ H +KI K +GQ+FLLD NI KI + + G V+E+G GPG LT+ + Sbjct: 4 LPTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNPITGKVVLEVGPGPGGLTRAI 63 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L +K+IVIEKD F +L +I + ++LE+I DAL D S+ I II+NL Sbjct: 64 LAHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNIE--SNRIIIISNL 121 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNIGT+L+ W+ + F E + ++ Q EV ERIT+ +S YGR++VL + Sbjct: 122 PYNIGTQLIVQWLHQIS---FVEYMIIMLQDEVVERITSPHSSKMYGRITVLAQIVSDVR 178 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244 F +S F P PKV S+V+ P + + +E+++KIT+ AF RRK L+ L L Sbjct: 179 KCFKVSSRAFNPPPKVDSSVMLVSPKKHQLDRNTIENVQKITKLAFSTRRKKLKNCLSHL 238 Query: 245 GGENLLHQAGIETNL--RAENLSIEDFCRITNIL 276 + + L R E L+ E + +++ IL Sbjct: 239 LKSINITDEILNAQLHQRPEQLTPEQYVQLSRIL 272 >gi|329925506|ref|ZP_08280380.1| dimethyladenosine transferase [Paenibacillus sp. HGF5] gi|328939789|gb|EGG36129.1| dimethyladenosine transferase [Paenibacillus sp. HGF5] Length = 294 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 154/282 (54%), Gaps = 23/282 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+S + KK +GQNFL+D NIL KI E++G + +EIG G G LT+ L A Sbjct: 14 KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQT-A 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 V +E DQ+ PILK++ + N + + D LKVD F + F S + ++ANLP Sbjct: 73 GTVTAVEIDQRLIPILKEVLEPYGN-VRVHHGDVLKVDLHELFRQDFGDVSKVSVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + + P E++ ++ QKEV ER+ A S YG LS+ + ++ + Sbjct: 132 YYVTTPILMKLLE-EKLP--LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQYYSEPKL 188 Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242 + I PH VF P P V S VI P P +E + ++ Q +F +RRKT+ +LK Sbjct: 189 VC-IVPHTVFIPQPNVESAVIRLAVREQP-PVRVEDERFFFEVVQASFAQRRKTIANNLK 246 Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 R E LL +AGIE + R E LSIE++ R++N+L Sbjct: 247 SRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288 >gi|109899726|ref|YP_662981.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c] gi|109702007|gb|ABG41927.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c] Length = 268 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 142/265 (53%), Gaps = 13/265 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ +I + G V+EIG G G LT+ + L K+ V+E D+ Sbjct: 11 RKRFGQNFLHDPYIIDQIVSAINPQVGQNVVEIGPGLGALTEPVCEL-IDKLTVVELDRD 69 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP ++L I++ DALK DF + F+ P+R+ NLPYNI T L+F+ Sbjct: 70 LAQRLRT----HPFIASKLNIVEKDALKFDFSELFSEEHPLRVFGNLPYNISTPLMFHLF 125 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + + + + QKEV R+ A + +YGRLSV+ + + + P F P Sbjct: 126 S---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGAFNPP 182 Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IPH + P+ E+L ++ +AF +RRKT+R SLK E L I Sbjct: 183 PKVDSAVVRLIPHKVRPVEVKSEEALNRVCAQAFNQRRKTIRNSLKESLSEAQLISLDIN 242 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 LRAENLS+ F +I ++ Q+ Sbjct: 243 PELRAENLSLAQFGQIADLAFSTQE 267 >gi|88704595|ref|ZP_01102308.1| Dimethyladenosine transferase [Congregibacter litoralis KT71] gi|88700916|gb|EAQ98022.1| Dimethyladenosine transferase [Congregibacter litoralis KT71] Length = 268 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 137/262 (52%), Gaps = 7/262 (2%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL D ++ ++ + ++EIG G G LT LL G ++ IE D+ Sbjct: 11 PRKRFGQNFLRDPGVIDRLERAIAPAASQHLVEIGPGLGALTDALLQSGC-QLDAIELDR 69 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L S HPN + DALK DF +R++ NLPYNI T L+F + Sbjct: 70 DLVTPLLAAFSIHPN-FTLHSADALKFDFSSVVRGEEQLRVVGNLPYNISTPLIFRLLE- 127 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + + + Q EV +R+TA + H+GRL ++ + + ++F++ P F P PK Sbjct: 128 --QAPIIKDMHFMLQLEVVQRLTATPGNKHWGRLGIMAQYLCRTELLFEVPPEAFDPPPK 185 Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S +I PH +P+ C + L+K+ + AF +RRKTLR +LK L + + GI+ Sbjct: 186 VQSAIIRLTPHQSPLYPDCDSKILEKVVKAAFAQRRKTLRNNLKGLLTDEAIEATGIDPG 245 Query: 259 LRAENLSIEDFCRITNILTDNQ 280 RAE L++ F + L ++Q Sbjct: 246 CRAETLALARFVALAEQLENSQ 267 >gi|329920627|ref|ZP_08277314.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G] gi|328935885|gb|EGG32345.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G] Length = 295 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQPII 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|254796737|ref|YP_003081573.1| dimethyladenosine transferase [Neorickettsia risticii str. Illinois] gi|254589984|gb|ACT69346.1| dimethyladenosine transferase [Neorickettsia risticii str. Illinois] Length = 262 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 10/262 (3%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+F+ D +L KI ++ S+ G + EIGAG G L+ +L ++ +EKD++F Sbjct: 6 KLLGQHFIYDREVLDKIIDTVTSVKGKHIFEIGAGSGTLSAAILLREPASLMSVEKDKRF 65 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L + +Q+ N I DAL + + + IIANLPYNI T LL W++ Sbjct: 66 SESLSSLMAQYQNYKYTI-GDALLIRLSSLYK-QEKVTIIANLPYNIATHLLLGWMNELE 123 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + L+FQKEV +RI AQ S YG LSVL K F ++P VF P PKVT Sbjct: 124 ---HIREMVLMFQKEVADRICAQPKSKSYGTLSVLVQLECKVESQFTLAPEVFTPPPKVT 180 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIET 257 STV+ P P L+KI E F +RRK +++SL R+ ++ L AG Sbjct: 181 STVLKLTPLEKKWPRNKPVLEKILTEGFSQRRKMIKKSLSRVFKDSEALHFALAHAGASP 240 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +R E L+ E C+++ + N Sbjct: 241 TMRIEELNPEQLCKLSCMAEMN 262 >gi|165975860|ref|YP_001651453.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226729748|sp|B0BTQ4|RSMA_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|165875961|gb|ABY69009.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 289 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 145/268 (54%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+N++ I + +G + EIG G G LT+ + K+ V+E D+ Sbjct: 15 RKRFGQNFLHDMNVIHNIVSAINPKNGQFLFEIGPGLGALTEPVAE-QVDKLTVVELDRD 73 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133 L+ HP ++L II+ DAL+ +F ++F +R+ NLPYNI T L Sbjct: 74 LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLELKEGEGVRVFGNLPYNISTPL 129 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + + QKEV +R+ A NS YGRL+++ + + + ++ P Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVVPVLEVPPT 186 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S V+ +PH + P P + L ++T +AF +RRKTLR +L L L Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSPEQLE 246 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 I+ N RAENLSI D+ R+ N L DN Sbjct: 247 ALNIDLNARAENLSIADYARLANWLYDN 274 >gi|152968629|ref|YP_001333738.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893024|ref|YP_002917758.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044] gi|262044916|ref|ZP_06017958.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330009280|ref|ZP_08306496.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3] gi|166221672|sp|A6T4I7|RSMA_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150953478|gb|ABR75508.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545340|dbj|BAH61691.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238774027|dbj|BAH66524.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044] gi|238774059|dbj|BAH66555.1| dimethyladenosine transferase [Klebsiella pneumoniae] gi|259037643|gb|EEW38872.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534857|gb|EGF61399.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3] Length = 273 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ ++F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L + GI+ +RAEN+S+ +C + N L+DN Sbjct: 223 KTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDN 267 >gi|260596475|ref|YP_003209046.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Cronobacter turicensis z3032] gi|260215652|emb|CBA27949.1| Dimethyladenosine transferase [Cronobacter turicensis z3032] Length = 273 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 150/286 (52%), Gaps = 28/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +DF + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMDFGELSQKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKR 233 + + + ++ P F P PKV S V+ +PH P P ++ L+ ++T EAF +R Sbjct: 163 MAQYFCNVIPVLEVPPTAFTPPPKVDSAVVRLVPHATP-PHPVKELRLLSRLTTEAFNQR 221 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 RKT+R SL + ++L G++ +RAEN+S+ +C++ N L DN Sbjct: 222 RKTIRNSLGNVFTPDVLVSLGVDPAMRAENISVAQYCQMANYLADN 267 >gi|312874729|ref|ZP_07734748.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b] gi|311089474|gb|EFQ47899.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b] Length = 295 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|259500886|ref|ZP_05743788.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335] gi|302190661|ref|ZP_07266915.1| dimethyladenosine transferase [Lactobacillus iners AB-1] gi|309809117|ref|ZP_07702990.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D] gi|259167580|gb|EEW52075.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335] gi|308170562|gb|EFO72582.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D] Length = 295 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQPII 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|307132632|ref|YP_003884648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Dickeya dadantii 3937] gi|306530161|gb|ADN00092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Dickeya dadantii 3937] Length = 272 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 148/286 (51%), Gaps = 32/286 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFFN 114 + +G R V+E D +D++++ HP ++L IIQ DA+ VDF Sbjct: 53 ---IPVGERIDSFTVVELD-------RDLAARLEVHPTLRDKLTIIQQDAMTVDFAALSQ 102 Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A +S YGR Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPDSKAYGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231 LSV+ + + + ++ P F P+PKV S V+ +PH +P P L +IT EAF Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPAVDTRILSRITTEAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +RRKTLR SL L L ++ N+RAEN++I +CR+ LT Sbjct: 220 QRRKTLRNSLGNLFTPEQLTALEVDPNVRAENVTITQYCRLAEWLT 265 >gi|118587313|ref|ZP_01544740.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163] gi|118432302|gb|EAV39041.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163] Length = 292 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 156/280 (55%), Gaps = 18/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + K +GQNFL+DLN+L++I + + TVIEIG G G+LT+ L A Sbjct: 14 RAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V+ E D++ PIL + + N +EI+ D LK DF F + ++I+ANLPY I Sbjct: 73 KQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADF-SIFAKNQSLKIVANLPYYIT 130 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +LF +++ ++S+T++ QKEV R+ A S YG LS+ +R ++ + Sbjct: 131 TPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILPV 187 Query: 191 SPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F PSP V S V+ P N P E+L KI + +F RRK+L +L G+N Sbjct: 188 TRKSFMPSPNVDSAVVQLTPKENFQSFPHE-EALFKIIKASFAHRRKSLVNNLLYYFGKN 246 Query: 249 ---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + G + N+R E L++E++ ++ N L++N Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286 >gi|291520367|emb|CBK75588.1| dimethyladenosine transferase [Butyrivibrio fibrisolvens 16/4] Length = 284 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 155/291 (53%), Gaps = 26/291 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N +++ + +H KKY GQNFL+D N+L I +++G V+EIG G G +T Sbjct: 4 LSNPTYTKAVLEAHGFSFQKKY-GQNFLIDGNVLDNIIDAAGITKDDFVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L AR+V+ +E D+ PIL D S + N +I D LKVD + N PI Sbjct: 63 QRLCE-EAREVVAVEIDKTLIPILDDTLSTYKN-WTVINQDILKVDIKALADEKNGGKPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + P ES+T++ QKEV +R+ S YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFESHV--PL-ESITIMVQKEVADRMQEGPGSKEYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238 + + ++ ++ P F P PKV STVI H P+ C + L +I + +F +RRKTL+ Sbjct: 178 YYSNPEIVCEVPPSCFMPQPKVASTVITLKCHEKPPVECDEKLLFQIIRASFNQRRKTLQ 237 Query: 239 QSLKRLGGENLLH-----------QAGIETNLRAENLSIEDFCRITNILTD 278 L N LH +AG +R E LS+E+F ++TNIL + Sbjct: 238 NGLG-----NGLHYSKEQIAEAISKAGYSPTIRGEALSLEEFAKLTNILKE 283 >gi|114048606|ref|YP_739156.1| dimethyladenosine transferase [Shewanella sp. MR-7] gi|123131134|sp|Q0HS06|RSMA_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113890048|gb|ABI44099.1| dimethyladenosine transferase [Shewanella sp. MR-7] Length = 268 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80 +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V+E D+ Sbjct: 12 RKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70 Query: 81 -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 Q P+LKD +L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 71 LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267 >gi|332305311|ref|YP_004433162.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172640|gb|AEE21894.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 268 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 141/259 (54%), Gaps = 13/259 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ +I + +G V+EIG G G +T+ + L K+ V+E D+ Sbjct: 11 RKRFGQNFLHDPYIIDQIVSAINPQNGQNVVEIGPGLGAITEPVCEL-IDKLTVVELDRD 69 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP ++L I++ DALK DF + F+ +P+R+ NLPYNI T L+F+ Sbjct: 70 LAQRLRT----HPFIASKLNIVEKDALKFDFSELFSEENPLRVFGNLPYNISTPLMFHLF 125 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + + + + QKEV R+ A + +YGRLSV+ + + + P F P Sbjct: 126 S---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGAFNPP 182 Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IPH + P+ E L ++ +AF +RRKT+R SLK E L I Sbjct: 183 PKVDSAVVRLIPHKVRPVAVKSEEVLNRVCAQAFNQRRKTIRNSLKESVSEAQLLSLDIN 242 Query: 257 TNLRAENLSIEDFCRITNI 275 LRAENLS+ F +I ++ Sbjct: 243 PELRAENLSLAQFGQIADL 261 >gi|330961062|gb|EGH61322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 268 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 7/264 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ V+ Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLDVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+F+ Sbjct: 64 ELDKDLIPILNSQFAGKPN-FSLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLIFH 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + + QKEV ER+ +GRLS++ + + +F++ P F Sbjct: 123 LLQNAS---LIRDMHFMLQKEVVERMATGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK L + + +G Sbjct: 180 PPPKVDSAIVRLVPHETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASG 239 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ +LR E L + F R+ + L++ Sbjct: 240 VDGSLRPEQLDLAAFVRLADTLSE 263 >gi|311280966|ref|YP_003943197.1| dimethyladenosine transferase [Enterobacter cloacae SCF1] gi|308750161|gb|ADO49913.1| dimethyladenosine transferase [Enterobacter cloacae SCF1] Length = 273 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F + + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMNFGELAEKLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTPPHPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L ++L GI+ +RAEN+S+ +C++ N LT+N Sbjct: 223 KTIRNSLGNLFTVDVLTGLGIDPAVRAENISVAQYCQMANWLTEN 267 >gi|56961852|ref|YP_173574.1| dimethyladenosine transferase [Bacillus clausii KSM-K16] gi|62900485|sp|Q5WLW2|RSMA_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56908086|dbj|BAD62613.1| dimethyladenosine transferase [Bacillus clausii KSM-K16] Length = 296 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 19/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + KK +GQNFL+DLNIL KI E+SG + ++EIG G G LT+ L A Sbjct: 15 AILKKHGFTLKKSLGQNFLIDLNILAKIVEASGFDEQDGIVEIGPGIGALTEQLAK-KAD 73 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127 KV+ E D + P+L+D S +PN ++II D LK D + F+ I ++ANLPY Sbjct: 74 KVVAFEIDGRLIPVLEDTLSAYPN-VKIIHSDVLKADLPGVLDAEFSKGQAIHVVANLPY 132 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + T +L + D P ++S+T++ Q EV ERI A+ S YG LS+ + +A M Sbjct: 133 YVTTPILMKLLE-DRLP--FKSITVMIQAEVAERIAAKPGSKEYGALSIAAQYYAEAKPM 189 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KRL 244 + VF P P+V S+V+ P+ ++ + +F RRKT+ +L L Sbjct: 190 VVVPASVFVPQPRVDSSVLKLTIREKPLVEVIDERWFFNVFHASFANRRKTILNNLVHNL 249 Query: 245 GG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L +AGI+ R E LS ++F R+++ L Sbjct: 250 AGKDAKAAIEQALSEAGIDPKRRGETLSPQEFARLSDAL 288 >gi|172056080|ref|YP_001812540.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15] gi|171988601|gb|ACB59523.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15] Length = 292 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 155/284 (54%), Gaps = 20/284 (7%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 H K IL+ + KK +GQNFL+DLN+L I ++ V+EIG G G+LT+ Sbjct: 8 HRTKEILAKHGFSFKKSLGQNFLIDLNVLGNIVGAANLTPDSGVLEIGPGIGSLTEQSAK 67 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS------SPIRI 121 A+KV+ +E DQ+ PIL+D + +P+ +++I DAL++D E + + + + Sbjct: 68 -QAKKVVALEIDQRLLPILEDSLAPYPH-VKVIHGDALELDLETIVDEEFTQQGITDLAV 125 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY + T ++ + A T PF +L ++ QKEV ERI AQ + YG LS+ + Sbjct: 126 VANLPYYVTTPIIMRILEART--PF-RTLIMMIQKEVAERIGAQPGTKAYGSLSIAIQYY 182 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQ 239 +A + F + VF P+P V S VI P L+ ++T+ +F +RRKT+ Sbjct: 183 AEAEVCFTVPKQVFIPAPNVDSAVIRLNIRKEPAVKTLDEKLFFEVTRASFAQRRKTILN 242 Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L G E LH+AGI+ R E LS+++F ++ + L Sbjct: 243 NLSSHFGKAEKEAVEAALHEAGIDPRRRGETLSLQEFAQLADAL 286 >gi|113969249|ref|YP_733042.1| dimethyladenosine transferase [Shewanella sp. MR-4] gi|123325289|sp|Q0HLT2|RSMA_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113883933|gb|ABI37985.1| dimethyladenosine transferase [Shewanella sp. MR-4] Length = 268 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80 +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V+E D+ Sbjct: 12 RKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70 Query: 81 -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 Q P+LKD +L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 71 LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDAEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267 >gi|168187487|ref|ZP_02622122.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund] gi|169294621|gb|EDS76754.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund] Length = 281 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 140/267 (52%), Gaps = 13/267 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y K +GQNFL D N+L I S + VIEIG G G LT+ LL A Sbjct: 7 KDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK-KA 65 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL + PN ++I DALKVDF + ++++ANLPY + Sbjct: 66 KRVCAIELDSDLIPILTEELKDFPN-FKLIHKDALKVDFNEIIGDEKSVKVVANLPYYVT 124 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + ++SLT++ QKEV ERI ++ N YG LS+L + ++ + Sbjct: 125 TPIIARLLKEGYK---FKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILRKV 181 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLG--- 245 P F P PKV S +I P E KI +++F RRKTLR ++K LG Sbjct: 182 PPTCFIPQPKVDSIIIKLDRLDEPRVKVKDKELFFKIVRQSFNMRRKTLRNAIKSLGDVS 241 Query: 246 GENL---LHQAGIETNLRAENLSIEDF 269 GEN+ + AGI+ R E LS+++F Sbjct: 242 GENIEKVFNDAGIDPRRRGETLSLQEF 268 >gi|322834455|ref|YP_004214482.1| dimethyladenosine transferase [Rahnella sp. Y9602] gi|321169656|gb|ADW75355.1| dimethyladenosine transferase [Rahnella sp. Y9602] Length = 275 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 153/278 (55%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN++ H H+ +K GQNFL D ++ I + + G V+EIG G LT Sbjct: 1 MNSRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRI 121 + + + + VIE D+ L++ + + +L +IQ DA+K++F E + P+R+ Sbjct: 53 EPVAS-RLDSMTVIELDRDLATRLEN-NPKFQGKLRVIQSDAMKINFGELSEELGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TYTNAIKDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ +PH + P P + L ++T +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPESFTPAPKVESAVVRLVPHEVIPYPVPDIRILSRLTTDAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L + + G++ ++RAEN+S+E FC++ N L+ Sbjct: 228 SLGHLFTPEQMTELGLDLSMRAENISVEQFCKLANWLS 265 >gi|213967675|ref|ZP_03395822.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1] gi|301382735|ref|ZP_07231153.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato Max13] gi|302063470|ref|ZP_07255011.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato K40] gi|213927451|gb|EEB60999.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1] Length = 268 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 141/259 (54%), Gaps = 7/259 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +L KI + + ++EIG G G LT+ LL GA ++ V+E D+ Sbjct: 10 RKRFGQNFLHDAGVLDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL + PN + Q DALK DF +R++ NLPYNI T L+F+ + Sbjct: 69 LIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV ER+ A +GRLS++ + + +F++ P F P PKV Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184 Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + +G++ +L Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244 Query: 260 RAENLSIEDFCRITNILTD 278 R E L + F R+ + L++ Sbjct: 245 RPEQLDLAAFVRLADTLSE 263 >gi|119504979|ref|ZP_01627056.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2080] gi|119459265|gb|EAW40363.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2080] Length = 279 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 133/257 (51%), Gaps = 7/257 (2%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL D +++ IA + + ++EIG G G LT+ L+T G ++ IE D+ Sbjct: 24 PRKRFGQNFLQDDGVIQAIARAISAHKDDHIVEIGPGQGALTESLVTSGC-QLDAIELDR 82 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L S HP R + DALK D++ S P+R++ NLPYNI T L+F + Sbjct: 83 DLTTGLLAAFSIHP-RFTLHTGDALKFDYKALRADSRPLRVVGNLPYNISTPLIFKLLEN 141 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + Q+EV R+ AQ S +GRL V+ + + +FD+ P FFP PK Sbjct: 142 TA---IIGDMHFMLQREVVTRLAAQPGSKDWGRLGVMAQFYCDVSHLFDVPPEAFFPPPK 198 Query: 201 VTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S ++ IPH P P C + L + Q AF +RRKTLR + K + + + Sbjct: 199 VQSAIVRLIPHATPPYPDCDVVRLGRTVQMAFAQRRKTLRNNFKGVLNDEAFASVDVTPT 258 Query: 259 LRAENLSIEDFCRITNI 275 RAE L +E F ++ + Sbjct: 259 ARAETLRLEQFVALSRL 275 >gi|297516941|ref|ZP_06935327.1| dimethyladenosine transferase [Escherichia coli OP50] Length = 273 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ IA + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIASAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|157960690|ref|YP_001500724.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345] gi|189028818|sp|A8H0V2|RSMA_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157845690|gb|ABV86189.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345] Length = 267 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 152/283 (53%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + + G K+IV+E D+ LK +HP ++LEI Q DALK DF + + Sbjct: 53 EPVAS-GIDKLIVVELDKDLVERLK----EHPVLKDKLEIHQGDALKFDFNQLVREDKQM 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V+ Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237 + + + ++ P F P PKV S V+ +P+ + P PC ++ L+ +T AF RRKTL Sbjct: 165 YHCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKVKPWPCKDVDLLRNLTTTAFNMRRKTL 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R +LK+L + GI+ LR E +S+E + + N + D + Sbjct: 225 RNNLKQLLSDEDFAVLGIDATLRPEQISVEQYVAMANHVFDRK 267 >gi|312863719|ref|ZP_07723957.1| dimethyladenosine transferase [Streptococcus vestibularis F0396] gi|322515990|ref|ZP_08068928.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC 49124] gi|311101255|gb|EFQ59460.1| dimethyladenosine transferase [Streptococcus vestibularis F0396] gi|322125525|gb|EFX96866.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC 49124] Length = 290 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL+D H N +++I +D LK D + +F N + PI+++ANLP Sbjct: 69 AEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PF-EEFVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF R+++ L + Sbjct: 245 FGKSEEVKNKLEQALENATIKPSIRGEALSISDFARLSDALRE 287 >gi|253995957|ref|YP_003048021.1| dimethyladenosine transferase [Methylotenera mobilis JLW8] gi|253982636|gb|ACT47494.1| dimethyladenosine transferase [Methylotenera mobilis JLW8] Length = 257 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 11/264 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I KK GQNFL D ++ + ++ ++EIG G G LTQ L+ + V+E Sbjct: 2 KHIAKKRFGQNFLTDQGVISSLVDAISPKANDLMVEIGPGLGALTQPLMQ-QLDMLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ ++ N++ I DALK DF N IR++ NLPYNI T +LF+ Sbjct: 61 VDRDIISWMEKTYVH--NKITIHNSDALKFDFSSLGN---AIRVVGNLPYNISTPILFHL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ + + QKEV ER+ A ++ YGRLSV+ +R + +F + P F P Sbjct: 116 LNNVAS---IIDMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMEYLFTVPPEAFDP 172 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S + +PH + P P E+L ++ AFG+RRKTLR +LK L + + Sbjct: 173 APKVESAFVRCVPHASLPHPADDEALFAQVVTAAFGQRRKTLRNTLKGLLDDEGFKALAL 232 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 ++ LRAENLS+ DF I+N L+ N Sbjct: 233 DSTLRAENLSVADFAGISNYLSQN 256 >gi|300362465|ref|ZP_07058641.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03] gi|300353456|gb|EFJ69328.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03] Length = 296 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKD------ISSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV+ E DQ ILK+ + NR +++ D LK +F K F +++ ++ Sbjct: 74 -KVLAYEVDQDLPEILKNELPQKVAGEELSNRFKLVMKDVLKANFTKDSDGFLDLNKSVK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T ++FN I ++ + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 133 IVANLPYYITTPIIFNLIKSNLA---FSSLTLMMQKEVAERLVAKPKTKEYGPLTIAVQS 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238 R + ++ F P PKV S V+ P L P + + + F +RRKTL Sbjct: 190 RMNVKLAEEVKSTSFMPRPKVDSAVVVLTP-LTEKPDIDDYSFFDHVVKMCFAQRRKTLA 248 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK L E +++ G++ +R E L++ F + ++L D Q Sbjct: 249 NNLKSLVKDRDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295 >gi|261403903|ref|YP_003240144.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10] gi|261280366|gb|ACX62337.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10] Length = 294 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 154/282 (54%), Gaps = 23/282 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+S + KK +GQNFL+D NIL KI E++G + +EIG G G LT+ L A Sbjct: 14 KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQT-A 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 V +E DQ+ PIL+++ + N + + D LKVD F + F S + ++ANLP Sbjct: 73 GTVTAVEIDQRLIPILREVLEPYGN-VRVHHGDVLKVDLHELFRQDFADVSKVSVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + + P E++ ++ QKEV ER+ A S YG LS+ + ++ + Sbjct: 132 YYVTTPILMKLLE-EKLP--LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQYYSEPKL 188 Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242 + I PH VF P P V S VI P P +E + ++ Q +F +RRKT+ +LK Sbjct: 189 VC-IVPHTVFIPQPNVESAVIRLAVREQP-PVRVEDERFFFEVVQASFAQRRKTIANNLK 246 Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 R E LL +AGIE + R E LSIE++ R++N+L Sbjct: 247 SRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288 >gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1] gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1] Length = 293 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 148/283 (52%), Gaps = 24/283 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I++ Y +K +GQNFL+D NI+ KI ++ G V EIG G G LTQ L Sbjct: 10 VKDIINTYGFRVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGVLTQR-LARS 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPIR 120 A KVI +E D+ PIL + + N +++ DALKVDF++ F + + Sbjct: 69 AGKVIAVEIDKNLLPILTETLTDFDN-AQVVHADALKVDFDRLAAEHTEGGFGKGAKSFK 127 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T +L + +++ ++ L ++ QKEV ER+ A YG LS+ + Sbjct: 128 LVANLPYYITTPILMHLLTSGFN---FDCLVVMMQKEVAERLQASPGGKDYGSLSIAVQY 184 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTL 237 T ++ + VFFP+P V S VI P P LES + K+ + AFG+RRKTL Sbjct: 185 YTVPEIVTRVPKTVFFPAPDVESAVIQLTRRKRP-PVTLESEEVFFKVVRAAFGQRRKTL 243 Query: 238 RQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITN 274 SL G +L +A I+ R E L+IEDF + N Sbjct: 244 LNSLTGSGLAEKETWIKILEEAAIDPTRRGETLTIEDFANLAN 286 >gi|323181748|gb|EFZ67161.1| dimethyladenosine transferase [Escherichia coli 1357] gi|323945789|gb|EGB41836.1| dimethyladenosine transferase [Escherichia coli H120] Length = 273 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ ++RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSAEVLTGMGIDPSMRAENISVAQYCQMANYLAEN 267 >gi|237803359|ref|ZP_04590944.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025340|gb|EGI05396.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 268 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 143/266 (53%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ V Sbjct: 4 QYQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLDV 62 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ P L + PN + Q DALK DF +R++ NLPYNI T L+F Sbjct: 63 VELDKDLIPTLNSQFAGKPN-FSLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLIF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + + QKEV ER+ A +GRLS++ + + +F++ P F Sbjct: 122 HLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAF 178 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S ++ +PH +P + L+++ +EAF +RRKTLR +LK L + + Sbjct: 179 NPPPKVDSAIVRLVPH-ETLPHQAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|218703312|ref|YP_002410831.1| dimethyladenosine transferase [Escherichia coli UMN026] gi|298378654|ref|ZP_06988538.1| dimethyladenosine transferase [Escherichia coli FVEC1302] gi|226732578|sp|B7N7S6|RSMA_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218430409|emb|CAR11276.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli UMN026] gi|298280988|gb|EFI22489.1| dimethyladenosine transferase [Escherichia coli FVEC1302] Length = 273 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|218687929|ref|YP_002396141.1| dimethyladenosine transferase [Escherichia coli ED1a] gi|254807868|sp|B7MNR0|RSMA_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218425493|emb|CAR06275.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli ED1a] Length = 273 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|170761464|ref|YP_001785410.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch Maree] gi|259494246|sp|B1KRY8|RSMA_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169408453|gb|ACA56864.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch Maree] Length = 275 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 152/276 (55%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y+ K +GQNFL+D ++L+ I + + TVIEIG G G LT+ LL A Sbjct: 4 KEIVNKYEFKFNKNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLE-RA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL++ ++ N +I DALK+DF I+++ANLPY + Sbjct: 63 KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLVANLPYYVT 121 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + ++SLT++ QKEV ERI A+ N YG L+VL + ++ + Sbjct: 122 TPIISRLLKEKCD---FKSLTIMIQKEVAERIDAEPNCKEYGSLTVLVQYYCNTEIIRKV 178 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244 SP+ F P PKV S VI + L+ ++S K + + +F RRKTL SLK L Sbjct: 179 SPNCFIPRPKVDSIVIK-LDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|218547501|ref|YP_002381292.1| dimethyladenosine transferase [Escherichia fergusonii ATCC 35469] gi|226732582|sp|B7LVU5|RSMA_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218355042|emb|CAQ87648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia fergusonii ATCC 35469] Length = 273 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|66047854|ref|YP_237695.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae B728a] gi|75500351|sp|Q4ZMG5|RSMA_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|63258561|gb|AAY39657.1| RRNA 16S rRNA dimethylase [Pseudomonas syringae pv. syringae B728a] Length = 268 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGADPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|157156598|ref|YP_001461223.1| dimethyladenosine transferase [Escherichia coli E24377A] gi|293403126|ref|ZP_06647223.1| dimethyladenosine transferase [Escherichia coli FVEC1412] gi|300900925|ref|ZP_07119060.1| dimethyladenosine transferase [Escherichia coli MS 198-1] gi|301019759|ref|ZP_07183905.1| dimethyladenosine transferase [Escherichia coli MS 69-1] gi|331681437|ref|ZP_08382074.1| dimethyladenosine transferase [Escherichia coli H299] gi|166987692|sp|A7ZHE4|RSMA_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157078628|gb|ABV18336.1| dimethyladenosine transferase [Escherichia coli E24377A] gi|291430041|gb|EFF03055.1| dimethyladenosine transferase [Escherichia coli FVEC1412] gi|300355588|gb|EFJ71458.1| dimethyladenosine transferase [Escherichia coli MS 198-1] gi|300399096|gb|EFJ82634.1| dimethyladenosine transferase [Escherichia coli MS 69-1] gi|331081658|gb|EGI52819.1| dimethyladenosine transferase [Escherichia coli H299] Length = 273 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|302185943|ref|ZP_07262616.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae 642] Length = 268 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFAGKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|219870955|ref|YP_002475330.1| dimethyladenosine transferase [Haemophilus parasuis SH0165] gi|219691159|gb|ACL32382.1| dimethyladenosine transferase [Haemophilus parasuis SH0165] Length = 286 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 25/288 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N+K H L H +K GQNFL D N++ I + ++EIG G G Sbjct: 1 MSSNSKKH-----LGH---TARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-- 115 LT+ + L + V+E D+ L+ HP +L +I+ DAL+ DF +F+ Sbjct: 53 LTEPVADL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIEQDALRFDFRAYFDSLA 107 Query: 116 --SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +++ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 LNGKAVKVFGNLPYNISTPLMFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ +P+ P P + L ++T +AF Sbjct: 165 LTIMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L G++ N RAENLS+ D+ R+ N L DN Sbjct: 225 QRRKTLRNALATLFSVEQLEALGVDLNARAENLSLADYARLANWLCDN 272 >gi|56461332|ref|YP_156613.1| dimethyladenosine transferase [Idiomarina loihiensis L2TR] gi|62900479|sp|Q5QVN7|RSMA_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56180342|gb|AAV83064.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Idiomarina loihiensis L2TR] Length = 288 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 102/276 (36%), Positives = 152/276 (55%), Gaps = 21/276 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-G 69 KT L H +K GQNFL D I+++I ++ L G +IEIG G LT+ + G Sbjct: 15 KTHLGHRA---RKRFGQNFLNDDYIIEQIVDAINPLPGENLIEIGPGLAALTEPTVDRSG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 KVI I++D L + HP ++LE+IQ DAL +DF +F P R+ NLP Sbjct: 72 HLKVIEIDRD------LVERLQHHPFLSSKLEVIQADALSIDFSQFAE-EGPARVFGNLP 124 Query: 127 YNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 YNI T L+F+ + AD + + + QKEV +R+ A+ S YGR+SV K T Sbjct: 125 YNISTPLIFHLLKFADDV----KDMHFMLQKEVVDRLAAEPGSKSYGRISVGVQQACKVT 180 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKR 243 + + P F P PKV S+V+ P+ +P P ++ L + AF +RRKT+R +LK+ Sbjct: 181 PVVAVPPSAFTPPPKVESSVVRLEPYAESPHPVKDKAQLHSLCLTAFNQRRKTIRNNLKQ 240 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + GI+ R E LS++D+CRI++ LT++ Sbjct: 241 LVPAEQMEALGIDPGARPETLSVDDYCRISDWLTEH 276 >gi|330970842|gb|EGH70908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 268 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|259501903|ref|ZP_05744805.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041] gi|259170080|gb|EEW54575.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041] Length = 297 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 151/287 (52%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y I KK GQNFL DLN+LK I ++ VIEIG G G LT+ L A Sbjct: 14 RAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEISKDDNVIEIGPGIGALTEQLAQ-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +V+ +E DQ P+L ++ + + N + ++ D L+ + ++F + + P++++ANL Sbjct: 73 GEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFADPAKPVKVVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +L N ++A P W ++ ++ QKEV +R+TAQ + YG L++ ++ A Sbjct: 132 PYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEYQMTAE 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLK 242 + F++S VF P+P V S ++ P P+ P + L + F RRK+L +L+ Sbjct: 189 IAFNVSRRVFVPAPNVDSAIVVLKPRATPLAVEPFDKQKLFGFIRACFAHRRKSLWNNLQ 248 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + +L Q I R E L++E F ++ N L Q Sbjct: 249 AAVGKQPAVKEQLQAILTQLAISPQTRPERLTLEQFIKLANALHAAQ 295 >gi|126664694|ref|ZP_01735678.1| dimethyladenosine transferase [Marinobacter sp. ELB17] gi|126631020|gb|EBA01634.1| dimethyladenosine transferase [Marinobacter sp. ELB17] Length = 277 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 139/258 (53%), Gaps = 8/258 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++I S +++EIG G G +T +L + R + V+E D+ Sbjct: 10 RKRFGQNFLHDPGVIERIVRSIAPKPDQSIVEIGPGLGAITAEILAVNPR-LQVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL+ +P I Q DALK DF + P+RII NLPYNI T L+F+ ++ Sbjct: 69 LIPILRTKFFNYPE-FRIHQADALKFDFNELVG-EQPLRIIGNLPYNISTPLIFHLLAHS 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +R+ A +YGRL ++T + K +F++ P F P+PKV Sbjct: 127 G---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCKVQPLFEVGPDAFRPAPKV 183 Query: 202 TSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +P+ P P L +L+ + + AF RRKTLR++L L Q GI L Sbjct: 184 DSFIVRLVPYATLPHPAKDLGTLQAVVRSAFNARRKTLRKALGGFVTAAELQQLGINDGL 243 Query: 260 RAENLSIEDFCRITNILT 277 R ENL + ++ I + L Sbjct: 244 RPENLGLAEYVAIADYLV 261 >gi|55823689|ref|YP_142130.1| dimethyladenosine transferase [Streptococcus thermophilus CNRZ1066] gi|62900468|sp|Q5LY12|RSMA_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|55739674|gb|AAV63315.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus thermophilus CNRZ1066] gi|312279113|gb|ADQ63770.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus thermophilus ND03] Length = 290 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 151/283 (53%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL+D H N +++I +D LK D + +F N PI+++ANLP Sbjct: 69 SEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G + L A I+ ++R E LSI DF R+++ L + Sbjct: 245 FGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287 >gi|302130722|ref|ZP_07256712.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 268 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ V+E D+ Sbjct: 10 RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL + PN + Q DALK DF +R++ NLPYNI T L+F+ + Sbjct: 69 LIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV ER+ A +GRLS++ + + +F++ P F P PKV Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184 Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + +G++ +L Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244 Query: 260 RAENLSIEDFCRITNILTD 278 R E L + F R+ + L++ Sbjct: 245 RPEQLDLAAFVRLADTLSE 263 >gi|117921647|ref|YP_870839.1| dimethyladenosine transferase [Shewanella sp. ANA-3] gi|166221704|sp|A0L064|RSMA_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117613979|gb|ABK49433.1| dimethyladenosine transferase [Shewanella sp. ANA-3] Length = 268 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80 +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V+E D+ Sbjct: 12 RKRFGQNFLTDDNVINRIVGAIVPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70 Query: 81 -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 Q P+LKD +L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 71 LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267 >gi|116511486|ref|YP_808702.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris SK11] gi|116107140|gb|ABJ72280.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris SK11] Length = 294 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 98/268 (36%), Positives = 146/268 (54%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D NIL KI E++ + VIEIG G G+LTQ LL A +V+ E D+ Sbjct: 27 KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLTQYLLEEAA-EVMAFEIDKS 85 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137 PIL++ + + N ++ +D LKVD +KF N + PI+++ANLPY I T +L + Sbjct: 86 LIPILEETMAPYDN-FTLVSEDILKVDLLSEIQKFKNPNLPIKVVANLPYYITTPILMHL 144 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + PF E ++ QKEV +RI A+ + YG LS+ + +A++ F + VF P Sbjct: 145 IESKI--PFSE-FVVMMQKEVADRIAARPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-------EN 248 +P V S ++ + P+ + K +F RRKTL +++ G E Sbjct: 202 APNVDSAILKMVRREEPLVEVEDEEWFFKTMHSSFVHRRKTLMNNMQAAFGKESKPEIEK 261 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL QA I +R E LSIE+F ++ + L Sbjct: 262 LLAQAEISPTIRGEALSIEEFAKLADAL 289 >gi|331270584|ref|YP_004397076.1| dimethyladenosine transferase [Clostridium botulinum BKT015925] gi|329127134|gb|AEB77079.1| dimethyladenosine transferase [Clostridium botulinum BKT015925] Length = 281 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 94/273 (34%), Positives = 146/273 (53%), Gaps = 15/273 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ Y K +GQNFL D +L I + S + VIEIG G G LT+ LL A Sbjct: 7 KEIVQKYNFKFTKSLGQNFLTDQTVLDDIVDGSEVCEEDFVIEIGPGVGTLTKELLK-KA 65 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +KV +E D PIL++ + N ++I DALK+DF++ ++++ANLPY + Sbjct: 66 KKVCAVELDSNLIPILQEELKEFDN-FQLIHKDALKIDFKELIGDEKSVKVVANLPYYVT 124 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + ++SLT++ QKEV ERI +Q N YG LS+L + ++ + Sbjct: 125 TPIIARLLKEGYK---FKSLTIMIQKEVAERIASQPNCKEYGALSILVQYYCDTRIIRKV 181 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGG- 246 P F P PKV S +I + LN + + E KI +++F RRKTLR ++K LG Sbjct: 182 PPTCFIPQPKVDSIIIR-LDRLNELRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGFV 240 Query: 247 -----ENLLHQAGIETNLRAENLSIEDFCRITN 274 E + + A I+ R E L++E+F ++ + Sbjct: 241 SSDNIEKVFNDADIDPRRRGETLTLEEFGKLAD 273 >gi|28867779|ref|NP_790398.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str. DC3000] gi|33516927|sp|Q88A46|RSMA_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28851014|gb|AAO54093.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str. DC3000] gi|331017631|gb|EGH97687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 268 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ V+E D+ Sbjct: 10 RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL + PN + Q DALK DF +R++ NLPYNI T L+F+ + Sbjct: 69 LIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV ER+ A +GRLS++ + + +F++ P F P PKV Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184 Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + +G++ +L Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244 Query: 260 RAENLSIEDFCRITNILTD 278 R E L + F R+ + L++ Sbjct: 245 RPEQLDLAAFVRLADTLSE 263 >gi|167622855|ref|YP_001673149.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4] gi|189028817|sp|B0TV52|RSMA_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|167352877|gb|ABZ75490.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4] Length = 267 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 152/286 (53%), Gaps = 27/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 + + + G K+IV+E D+ Q P+LKD +LEI Q DALK DF + Sbjct: 53 EPVAS-GIDKLIVVELDKDLVERLQTHPVLKD-------KLEIHQGDALKFDFNQLVRED 104 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V Sbjct: 105 KQMKVFGNLPYNISTPLMFHLFE---FAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTV 161 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +P+ N P PC ++ L+ +T AF RR Sbjct: 162 MAQYHCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKNKPWPCKDVDLLRNLTTTAFNMRR 221 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR +LK+L + + GI+ LR E + ++ + + N + D + Sbjct: 222 KTLRNNLKQLLSDEDFAELGIDATLRPEQIRVDQYVAMANHVFDKK 267 >gi|306824464|ref|ZP_07457810.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433251|gb|EFM36221.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 290 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQYIQNFKNPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + KI++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKISKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F +++ L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDAL 285 >gi|71735918|ref|YP_272932.1| dimethyladenosine transferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483106|ref|ZP_05637147.1| dimethyladenosine transferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|118600884|sp|Q48NT7|RSMA_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71556471|gb|AAZ35682.1| dimethyladenosine transferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326009|gb|EFW82067.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea str. B076] gi|320332056|gb|EFW87992.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881716|gb|EGH15865.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330985796|gb|EGH83899.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011661|gb|EGH91717.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 268 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|270292088|ref|ZP_06198303.1| dimethyladenosine transferase [Streptococcus sp. M143] gi|270279616|gb|EFA25458.1| dimethyladenosine transferase [Streptococcus sp. M143] Length = 290 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + +P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDEQFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F + + L Sbjct: 245 FGKTEEIKDKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285 >gi|289676165|ref|ZP_06497055.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae FF5] Length = 268 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|167854678|ref|ZP_02477458.1| dimethyladenosine transferase [Haemophilus parasuis 29755] gi|167854215|gb|EDS25449.1| dimethyladenosine transferase [Haemophilus parasuis 29755] Length = 286 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 25/288 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N+K H L H +K GQNFL D N++ I + ++EIG G G Sbjct: 1 MSSNSKKH-----LGH---TARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-- 115 LT+ + L + V+E D+ L+ HP +L +I+ DAL+ DF +F+ Sbjct: 53 LTEPVADL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIEQDALRFDFRAYFDSLA 107 Query: 116 --SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +++ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 LNGKAVKVFGNLPYNISTPLMFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ +P+ P P + L ++T +AF Sbjct: 165 LTIMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L G++ N RAENLS+ D+ R+ N L DN Sbjct: 225 QRRKTLRNALATLFNVEQLEALGVDLNARAENLSLADYARLANWLCDN 272 >gi|259907385|ref|YP_002647741.1| dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96] gi|224963007|emb|CAX54490.1| Dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96] gi|283477218|emb|CAY73125.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia pyrifoliae DSM 12163] Length = 275 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 147/283 (51%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN++ H H+ +K GQNFL D I+ I + G V+EIG G G LT Sbjct: 1 MNSRVHQ-----GHFA---RKRFGQNFLNDRYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R + V+E D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDSMTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFATLAQEKG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A S YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P + +L +IT EAFGKRR Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYAQPPHPVDDIRALSRITTEAFGKRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTLR SL L ++L + I+ LRAEN+++ +C++ N LT Sbjct: 223 KTLRNSLGHLFTTDVLAEMNIDPTLRAENITVAQYCQLANWLT 265 >gi|55821771|ref|YP_140213.1| dimethyladenosine transferase [Streptococcus thermophilus LMG 18311] gi|62900469|sp|Q5M2L6|RSMA_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|55737756|gb|AAV61398.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus thermophilus LMG 18311] Length = 290 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 150/283 (53%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL+D H N +++I +D LK D + +F N PI+++ANLP Sbjct: 69 SEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + M Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTTKM 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G + L A I+ ++R E LSI DF R+++ L + Sbjct: 245 FGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287 >gi|313123062|ref|YP_004033321.1| ribosomal RNA small subunit methyltransferase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279625|gb|ADQ60344.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 296 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G G+LT+ LL G Sbjct: 15 AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73 Query: 72 KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121 KV E D IL + + Q R ++I D LK DF FF++S P+++ Sbjct: 74 KVAAYEVDHSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ S YG LS+ + Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240 + ++ F P PKV S V+ P P + ++ + F +RRKTL + Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L E LL + R E L+I DF RI+ + + Sbjct: 251 LKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293 >gi|331265645|ref|YP_004325275.1| dimethyladenosine transferase [Streptococcus oralis Uo5] gi|326682317|emb|CBY99934.1| dimethyladenosine transferase [Streptococcus oralis Uo5] Length = 290 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 150/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPGLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + +P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F +++ L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDAL 285 >gi|218693523|ref|YP_002401190.1| dimethyladenosine transferase [Escherichia coli 55989] gi|254807867|sp|B7L4H4|RSMA_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218350255|emb|CAU95938.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli 55989] Length = 273 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|323950949|gb|EGB46826.1| dimethyladenosine transferase [Escherichia coli H252] Length = 273 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PIGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|315644358|ref|ZP_07897498.1| dimethyladenosine transferase [Paenibacillus vortex V453] gi|315280235|gb|EFU43527.1| dimethyladenosine transferase [Paenibacillus vortex V453] Length = 294 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 157/288 (54%), Gaps = 24/288 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+S + KK +GQNFL+D NIL KI E++G + +EIG G G LT+ L A Sbjct: 14 KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQT-A 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 V IE DQ+ PIL+++ + N +++ D LKVD F++ F S + ++ANLP Sbjct: 73 GTVTAIEIDQRLIPILREVLEPYEN-VKVHHGDVLKVDLHELFQQDFGGVSKVSVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + + P E++ ++ QKEV ER+ A S YG LS+ + ++ + Sbjct: 132 YYVTTPILMKLLE-EKLP--LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQYYSEPKL 188 Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242 + I PH VF P P V S VI P P +E ++ Q +F +RRKT+ +LK Sbjct: 189 VC-IVPHTVFIPQPNVASAVIRLAVREEP-PVSVEDEGFFFEVVQASFAQRRKTIANNLK 246 Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 R E LL +AGI + R E LSIE++ +++N+L N DI Sbjct: 247 SRFFAGEGRERLEQLLQEAGIVPSRRGETLSIEEYAKLSNVLY-NADI 293 >gi|300715279|ref|YP_003740082.1| Dimethyladenosine transferase [Erwinia billingiae Eb661] gi|299061115|emb|CAX58222.1| Dimethyladenosine transferase [Erwinia billingiae Eb661] Length = 279 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 145/282 (51%), Gaps = 26/282 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D I+ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVSAIHPQKGEAIVEIGPGLGALT 52 Query: 63 QML-LTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NISS 117 + + L A VI I++D L HP +L I Q DA+ DF ++ Sbjct: 53 EPVGERLDAMTVIEIDRD------LAARLQTHPFLGPKLTIFQQDAMAFDFAEYAREKGQ 106 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +R+ NLPYNI T L+F+ S T + + QKEV R+ A S YGRL+V+ Sbjct: 107 SLRVFGNLPYNISTPLMFHLFSYATA---IRDMHFMLQKEVVNRLVAGPGSKAYGRLTVM 163 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRR 234 + + + ++ P F P+PKV S V+ +PH +P+ + L +IT EAFGKRR Sbjct: 164 AQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPHAKIEHPV-TDMRVLTRITTEAFGKRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 KTLR SL L +L + I+ LRAEN+++ +C++ N L Sbjct: 223 KTLRNSLGHLFSLEVLQEMNIDPTLRAENITVAQYCQLANWL 264 >gi|251788203|ref|YP_003002924.1| dimethyladenosine transferase [Dickeya zeae Ech1591] gi|247536824|gb|ACT05445.1| dimethyladenosine transferase [Dickeya zeae Ech1591] Length = 272 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 147/286 (51%), Gaps = 32/286 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFFN 114 + +G R V+E D +D++++ HP ++L IIQ DA+ VDF Sbjct: 53 ---IPVGERIDSFTVVELD-------RDLAARLEVHPTLRDKLTIIQQDAMTVDFAALSQ 102 Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A +S YGR Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPDSKAYGR 159 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFG 231 L+V+ + + + ++ P F P+PKV S V+ +PH +P P L +IT EAF Sbjct: 160 LTVMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPTVDTRILSRITTEAFN 219 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +RRKTLR SL L L ++ N RAEN++I +CR+ LT Sbjct: 220 QRRKTLRNSLGNLFTPEQLTALEVDQNARAENVTIAQYCRLAEWLT 265 >gi|289649007|ref|ZP_06480350.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi str. 2250] Length = 268 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|298485300|ref|ZP_07003392.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160150|gb|EFI01179.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 268 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|290891124|ref|ZP_06554186.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429] gi|290479088|gb|EFD87750.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429] Length = 292 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 156/280 (55%), Gaps = 18/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + K +GQNFL+DLN+L++I + + TVIEIG G G+LT+ L A Sbjct: 14 RAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V+ E D++ PIL + + N ++I+ D LK DF F + ++I+ANLPY I Sbjct: 73 KQVVAYEIDKKLIPILSETLRPYKN-VKIVNRDILKADF-SIFAKNQSLKIVANLPYYIT 130 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +LF +++ ++S+T++ QKEV R+ A S YG LS+ +R ++ + Sbjct: 131 TPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILPV 187 Query: 191 SPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F PSP V S V+ P N P E+L KI + +F RRK+L +L G+N Sbjct: 188 TRKSFMPSPNVDSAVVQLTPKENFQSFPHE-EALFKIIKASFAHRRKSLVNNLLYYFGKN 246 Query: 249 ---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + G + N+R E L++E++ ++ N L++N Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286 >gi|26245977|ref|NP_752016.1| dimethyladenosine transferase [Escherichia coli CFT073] gi|91209113|ref|YP_539099.1| dimethyladenosine transferase [Escherichia coli UTI89] gi|110640266|ref|YP_667994.1| dimethyladenosine transferase [Escherichia coli 536] gi|117622341|ref|YP_851254.1| dimethyladenosine transferase [Escherichia coli APEC O1] gi|191174105|ref|ZP_03035619.1| dimethyladenosine transferase [Escherichia coli F11] gi|215485215|ref|YP_002327646.1| dimethyladenosine transferase [Escherichia coli O127:H6 str. E2348/69] gi|218556992|ref|YP_002389905.1| dimethyladenosine transferase [Escherichia coli S88] gi|227885048|ref|ZP_04002853.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972] gi|237704197|ref|ZP_04534678.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA] gi|300981027|ref|ZP_07175304.1| dimethyladenosine transferase [Escherichia coli MS 45-1] gi|300984194|ref|ZP_07176922.1| dimethyladenosine transferase [Escherichia coli MS 200-1] gi|301048437|ref|ZP_07195464.1| dimethyladenosine transferase [Escherichia coli MS 185-1] gi|306815349|ref|ZP_07449498.1| dimethyladenosine transferase [Escherichia coli NC101] gi|312966174|ref|ZP_07780400.1| dimethyladenosine transferase [Escherichia coli 2362-75] gi|331645161|ref|ZP_08346272.1| dimethyladenosine transferase [Escherichia coli M605] gi|33516938|sp|Q8FL96|RSMA_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600864|sp|Q0TLT6|RSMA_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365024|sp|Q1RGE6|RSMA_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221662|sp|A1A7A0|RSMA_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732573|sp|B7MAH6|RSMA_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807866|sp|B7UI99|RSMA_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|26106374|gb|AAN78560.1|AE016755_60 Dimethyladenosine transferase [Escherichia coli CFT073] gi|91070687|gb|ABE05568.1| dimethyladenosine transferase [Escherichia coli UTI89] gi|110341858|gb|ABG68095.1| dimethyladenosine transferase [Escherichia coli 536] gi|115511465|gb|ABI99539.1| dimethyladenosine transferase [Escherichia coli APEC O1] gi|190905599|gb|EDV65224.1| dimethyladenosine transferase [Escherichia coli F11] gi|215263287|emb|CAS07602.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218363761|emb|CAR01422.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli S88] gi|226902109|gb|EEH88368.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA] gi|227837877|gb|EEJ48343.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972] gi|281177268|dbj|BAI53598.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli SE15] gi|294493966|gb|ADE92722.1| dimethyladenosine transferase [Escherichia coli IHE3034] gi|300299730|gb|EFJ56115.1| dimethyladenosine transferase [Escherichia coli MS 185-1] gi|300306724|gb|EFJ61244.1| dimethyladenosine transferase [Escherichia coli MS 200-1] gi|300409063|gb|EFJ92601.1| dimethyladenosine transferase [Escherichia coli MS 45-1] gi|305851011|gb|EFM51466.1| dimethyladenosine transferase [Escherichia coli NC101] gi|307551898|gb|ADN44673.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli ABU 83972] gi|307629627|gb|ADN73931.1| dimethyladenosine transferase [Escherichia coli UM146] gi|312289417|gb|EFR17311.1| dimethyladenosine transferase [Escherichia coli 2362-75] gi|315285119|gb|EFU44564.1| dimethyladenosine transferase [Escherichia coli MS 110-3] gi|315293372|gb|EFU52724.1| dimethyladenosine transferase [Escherichia coli MS 153-1] gi|320197502|gb|EFW72116.1| Dimethyladenosine transferase [Escherichia coli WV_060327] gi|323955249|gb|EGB51022.1| dimethyladenosine transferase [Escherichia coli H263] gi|324008399|gb|EGB77618.1| dimethyladenosine transferase [Escherichia coli MS 57-2] gi|324012309|gb|EGB81528.1| dimethyladenosine transferase [Escherichia coli MS 60-1] gi|330909903|gb|EGH38413.1| dimethyladenosine transferase [Escherichia coli AA86] gi|331045918|gb|EGI18037.1| dimethyladenosine transferase [Escherichia coli M605] Length = 273 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|331661093|ref|ZP_08362025.1| dimethyladenosine transferase [Escherichia coli TA206] gi|315298429|gb|EFU57684.1| dimethyladenosine transferase [Escherichia coli MS 16-3] gi|331052135|gb|EGI24174.1| dimethyladenosine transferase [Escherichia coli TA206] Length = 273 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|210623277|ref|ZP_03293694.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275] gi|210153678|gb|EEA84684.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275] Length = 286 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 153/285 (53%), Gaps = 17/285 (5%) Query: 7 SH-SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 SH + K I+ + K +GQNFL+D N++ KI + + +G VIE+G G G LT+ + Sbjct: 6 SHRATKDIVDKHGFKFSKSLGQNFLIDDNVIDKIIDGARVKEGDKVIEVGPGIGTLTREM 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRII 122 A KV+ +E D+ PILK+ + N E++ +D LKVD K + P+++I Sbjct: 66 AKR-AEKVVAVEIDKNLIPILKETLADFDN-TEVVNEDILKVDINKLVDEKLSGGPVKLI 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ ++ D P + + ++ QKEV +R+ A ++ YG LSV + Sbjct: 124 ANLPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAVPSTKDYGALSVAVQYYC 180 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQS 240 ++ H+F P PKV STVI I E L K + AFG+RRKTL S Sbjct: 181 DTEIVAKAPRHMFIPQPKVDSTVIGLHIREERKYKADNEQLFFKTVKAAFGQRRKTLLNS 240 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L +G + +L +AGI+ R E LSIE+F ++NI+ N Sbjct: 241 LSSMGVLDKAKIKEVLAEAGIDEKRRGETLSIEEFAHLSNIINKN 285 >gi|323964849|gb|EGB60316.1| dimethyladenosine transferase [Escherichia coli M863] gi|327255031|gb|EGE66634.1| dimethyladenosine transferase [Escherichia coli STEC_7v] Length = 273 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELATKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|330891196|gb|EGH23857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. mori str. 301020] Length = 268 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|315611880|ref|ZP_07886799.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296] gi|315316058|gb|EFU64091.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296] Length = 290 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F +++ L Sbjct: 245 FGKTEEVKEKLTKALDQAGLSPSVRGEALSLEEFASLSDAL 285 >gi|322373748|ref|ZP_08048284.1| dimethyladenosine transferase [Streptococcus sp. C150] gi|321278790|gb|EFX55859.1| dimethyladenosine transferase [Streptococcus sp. C150] Length = 290 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL+D H N +++I +D LK D + +F N + PI+++ANLP Sbjct: 69 AEVMAFEIDERLVPILEDTLRDHDN-IKVINEDVLKADLQTRVKEFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFVVPHTVFVPAPNVDSAILKMTRREQPLVEVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF R+++ L + Sbjct: 245 FGKSEEVKAKLEQALENANIKPSIRGEALSITDFARLSDALRE 287 >gi|188532871|ref|YP_001906668.1| dimethyladenosine transferase [Erwinia tasmaniensis Et1/99] gi|226732581|sp|B2VGP6|RSMA_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|188027913|emb|CAO95770.1| Dimethyladenosine transferase [Erwinia tasmaniensis Et1/99] Length = 273 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 147/283 (51%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN++ H H+ +K GQNFL D I+ I + G V+EIG G G LT Sbjct: 1 MNSRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R + V+E D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDNMTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFAALAQEKG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A S YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P + +L +IT EAFGKRR Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYAQPPHPVNDIRALSRITTEAFGKRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTLR SL L ++L + I+ LRAEN+++ +C++ N LT Sbjct: 223 KTLRNSLGHLFTVDVLAEMNIDPTLRAENITVAQYCQLANWLT 265 >gi|302877393|ref|YP_003845957.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2] gi|302580182|gb|ADL54193.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2] Length = 262 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 141/267 (52%), Gaps = 25/267 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 KK GQNFL+D NI+ I + ++EIG G G LT+ LL +L V+ I++D Sbjct: 7 KKKFGQNFLVDQNIIADIISAIRPEADDNLVEIGPGLGALTRPLLKSLAHLHVVEIDRD- 65 Query: 81 QFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 I+ + + +P ++ I DALK D ++ +P+RI+ NLPYNI + LLF + Sbjct: 66 ----IIARLEADYPQPHTKMTIHAGDALKFDLA---SLGAPLRIVGNLPYNISSPLLFYF 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q EV ER+ A ++P YGRLSV+ +R + D+ P F P Sbjct: 119 AE---YADRITDMHFMLQNEVVERMVADHSTPAYGRLSVMLQYRFFMEKLLDVPPDSFRP 175 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK------KITQEAFGKRRKTLRQSLKRLGGENLLH 251 +PKV S ++ I PIP +K +I AFG+RRKTLR +LK E Sbjct: 176 APKVNSAIVRMI----PIPADQIVVKNEKLFGEIVGTAFGQRRKTLRNTLKSFLNEAEFE 231 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 GI LRAENLS+++F RI + D Sbjct: 232 NLGINPQLRAENLSVDEFARIAAYVDD 258 >gi|27469208|ref|NP_765845.1| dimethyladenosine transferase [Staphylococcus epidermidis ATCC 12228] gi|57866030|ref|YP_187727.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A] gi|251809801|ref|ZP_04824274.1| dimethyladenosine transferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875423|ref|ZP_06284295.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135] gi|293366135|ref|ZP_06612822.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W2(grey)] gi|33516932|sp|Q8CQU5|RSMA_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900459|sp|Q5HRR2|RSMA_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27316757|gb|AAO05932.1|AE016751_227 dimethyladenosine transferase [Staphylococcus epidermidis ATCC 12228] gi|57636688|gb|AAW53476.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A] gi|251806669|gb|EES59326.1| dimethyladenosine transferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295780|gb|EFA88302.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135] gi|291319729|gb|EFE60088.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329733035|gb|EGG69374.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU028] gi|329737895|gb|EGG74123.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU045] Length = 296 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 150/278 (53%), Gaps = 22/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69 + +L Y KK +GQNFL+D+NI+ KI E+S +D T VIE+G G G+LT+ L Sbjct: 13 RALLDQYGFNFKKSLGQNFLIDVNIINKIIEAS-HIDCTTGVIEVGPGMGSLTEQLAK-N 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANL 125 A+KV+ E DQ+ P+LKD S + N + II +D LK D K + I ++ANL Sbjct: 71 AKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVDTHLQDCDKIMVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L N + D P + ++ QKEVGER+ AQ + YG LS++ + T+ + Sbjct: 130 PYYITTPILLNLMQQDV--PI-DGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETS 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR---QS 240 + + VF P P V S V+ + P+ E K+ + AF +RRKT+ Q+ Sbjct: 187 KVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNNYQN 246 Query: 241 LKRLGGENL------LHQAGIETNLRAENLSIEDFCRI 272 + G +N L AGI+ R E L+I+DF + Sbjct: 247 FFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATL 284 >gi|225857560|ref|YP_002739071.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031] gi|254807890|sp|C1CMT3|RSMA_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225725962|gb|ACO21814.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031] gi|301794926|emb|CBW37388.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104] gi|332199997|gb|EGJ14071.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901] Length = 290 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 150/283 (53%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK----KITQEAFGKRRKTLRQSLK 242 F + VF P+P V S ++ + P+P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRR--PVPAVAVEDENFFFKVSKASFTHRRKTLWNNLT 242 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F + + L Sbjct: 243 GYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285 >gi|330963845|gb|EGH64105.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 268 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ V+E D+ Sbjct: 10 RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL + PN + Q DALK DF +R++ NLPYNI T L+F+ + Sbjct: 69 LIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV ER+ A +GRLS++ + + +F++ P F P PKV Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184 Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + +G++ +L Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLEQVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244 Query: 260 RAENLSIEDFCRITNILTD 278 R E L + F R+ + L++ Sbjct: 245 RPEQLDLAAFVRLADTLSE 263 >gi|322375823|ref|ZP_08050334.1| dimethyladenosine transferase [Streptococcus sp. C300] gi|321279091|gb|EFX56133.1| dimethyladenosine transferase [Streptococcus sp. C300] Length = 290 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F + + L Sbjct: 245 FGKTDEVKEKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285 >gi|209917243|ref|YP_002291327.1| dimethyladenosine transferase [Escherichia coli SE11] gi|226732579|sp|B6HZ32|RSMA_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209910502|dbj|BAG75576.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli SE11] Length = 273 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|24111497|ref|NP_706007.1| dimethyladenosine transferase [Shigella flexneri 2a str. 301] gi|30061618|ref|NP_835789.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T] gi|62900584|sp|Q83MG8|RSMA_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24050250|gb|AAN41714.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Shigella flexneri 2a str. 301] gi|30039860|gb|AAP15594.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Shigella flexneri 2a str. 2457T] gi|281599412|gb|ADA72396.1| Dimethyladenosine transferase [Shigella flexneri 2002017] gi|313646570|gb|EFS11031.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T] gi|332762369|gb|EGJ92636.1| dimethyladenosine transferase [Shigella flexneri 2747-71] gi|332764894|gb|EGJ95122.1| dimethyladenosine transferase [Shigella flexneri K-671] gi|332768840|gb|EGJ99019.1| dimethyladenosine transferase [Shigella flexneri 2930-71] gi|333022380|gb|EGK41618.1| dimethyladenosine transferase [Shigella flexneri K-304] Length = 273 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|254491379|ref|ZP_05104558.1| dimethyladenosine transferase [Methylophaga thiooxidans DMS010] gi|224462857|gb|EEF79127.1| dimethyladenosine transferase [Methylophaga thiooxydans DMS010] Length = 266 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I++ I E+ G ++EIG G G LT+ LL+ + VIE D+ Sbjct: 10 RKRFGQNFLHDEGIIEAIVEAISPAKGQHLVEIGPGRGALTKPLLSR-CDWLDVIELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+L+ + +L I + DAL+ D+ P+R+I NLPYNI T LLF+ + Sbjct: 69 LIPLLR--KQLNDEQLNIHEADALRFDYRSLQKDGEPLRVIGNLPYNITTPLLFHLLGQG 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + + Q+EV ERI AQ + YGRLS++ + +A ++F + P F P+PKV Sbjct: 127 DC---IEDMCFMLQREVVERICAQPGNKQYGRLSIMMQHQCQAELLFTVPPEAFEPAPKV 183 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S +I+ P + L+ + K+ AF +RRKT+ +LK + + Q GI+ Sbjct: 184 ESAIIYLQPLKQRVGGEVDLDVMGKLVTTAFSQRRKTIANTLKNMITTEVFEQVGIDPTQ 243 Query: 260 RAENLSIEDFCRITNILTDNQ 280 R E +S+E F +T Q Sbjct: 244 RPETVSVESFVALTRAYIQKQ 264 >gi|304391144|ref|ZP_07373096.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326027|gb|EFL93273.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 309 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 105/297 (35%), Positives = 149/297 (50%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV----DFEKFFNISSPI 119 LG R VI IE DQ+ L +QH L ++ DAL++ D E ++P Sbjct: 66 ELGCR-VIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWTAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP-----------HLNPIPCCLESLKKITQE 228 W +A F + +VF+P P V STV+ F L+ E+++ + QE Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241 Query: 229 -------AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 AF +RRKTLRQSL G NLL GI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAVGITPGLRAERLSVIDFTKIA 298 >gi|16128045|ref|NP_414593.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|74310670|ref|YP_309089.1| dimethyladenosine transferase [Shigella sonnei Ss046] gi|82542657|ref|YP_406604.1| dimethyladenosine transferase [Shigella boydii Sb227] gi|89106935|ref|AP_000715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K-12 substr. W3110] gi|110804117|ref|YP_687637.1| dimethyladenosine transferase [Shigella flexneri 5 str. 8401] gi|157159522|ref|YP_001456840.1| dimethyladenosine transferase [Escherichia coli HS] gi|170021591|ref|YP_001726545.1| dimethyladenosine transferase [Escherichia coli ATCC 8739] gi|170079714|ref|YP_001729034.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683255|ref|YP_001742172.1| dimethyladenosine transferase [Escherichia coli SMS-3-5] gi|188492783|ref|ZP_03000053.1| dimethyladenosine transferase [Escherichia coli 53638] gi|193066225|ref|ZP_03047278.1| dimethyladenosine transferase [Escherichia coli E22] gi|193070981|ref|ZP_03051910.1| dimethyladenosine transferase [Escherichia coli E110019] gi|194429859|ref|ZP_03062371.1| dimethyladenosine transferase [Escherichia coli B171] gi|194434556|ref|ZP_03066814.1| dimethyladenosine transferase [Shigella dysenteriae 1012] gi|194439700|ref|ZP_03071770.1| dimethyladenosine transferase [Escherichia coli 101-1] gi|218552636|ref|YP_002385549.1| dimethyladenosine transferase [Escherichia coli IAI1] gi|218698473|ref|YP_002406102.1| dimethyladenosine transferase [Escherichia coli IAI39] gi|238899456|ref|YP_002925252.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli BW2952] gi|253774917|ref|YP_003037748.1| dimethyladenosine transferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037468|ref|ZP_04871545.1| methyltransferase [Escherichia sp. 1_1_43] gi|254160176|ref|YP_003043284.1| dimethyladenosine transferase [Escherichia coli B str. REL606] gi|256020109|ref|ZP_05433974.1| dimethyladenosine transferase [Shigella sp. D9] gi|256025368|ref|ZP_05439233.1| dimethyladenosine transferase [Escherichia sp. 4_1_40B] gi|260842288|ref|YP_003220066.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O103:H2 str. 12009] gi|260853265|ref|YP_003227156.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O26:H11 str. 11368] gi|260866205|ref|YP_003232607.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O111:H- str. 11128] gi|293408146|ref|ZP_06651986.1| dimethyladenosine transferase [Escherichia coli B354] gi|293417929|ref|ZP_06660551.1| dimethyladenosine transferase [Escherichia coli B185] gi|293476715|ref|ZP_06665123.1| dimethyladenosine transferase [Escherichia coli B088] gi|300816088|ref|ZP_07096311.1| dimethyladenosine transferase [Escherichia coli MS 107-1] gi|300821944|ref|ZP_07102088.1| dimethyladenosine transferase [Escherichia coli MS 119-7] gi|300905455|ref|ZP_07123221.1| dimethyladenosine transferase [Escherichia coli MS 84-1] gi|300928650|ref|ZP_07144169.1| dimethyladenosine transferase [Escherichia coli MS 187-1] gi|300939468|ref|ZP_07154130.1| dimethyladenosine transferase [Escherichia coli MS 21-1] gi|300948655|ref|ZP_07162739.1| dimethyladenosine transferase [Escherichia coli MS 116-1] gi|300956981|ref|ZP_07169233.1| dimethyladenosine transferase [Escherichia coli MS 175-1] gi|301305057|ref|ZP_07211158.1| dimethyladenosine transferase [Escherichia coli MS 124-1] gi|301648382|ref|ZP_07248118.1| dimethyladenosine transferase [Escherichia coli MS 146-1] gi|307136654|ref|ZP_07496010.1| dimethyladenosine transferase [Escherichia coli H736] gi|307311495|ref|ZP_07591137.1| dimethyladenosine transferase [Escherichia coli W] gi|309796040|ref|ZP_07690452.1| dimethyladenosine transferase [Escherichia coli MS 145-7] gi|331640503|ref|ZP_08341651.1| dimethyladenosine transferase [Escherichia coli H736] gi|331661422|ref|ZP_08362346.1| dimethyladenosine transferase [Escherichia coli TA143] gi|331666288|ref|ZP_08367169.1| dimethyladenosine transferase [Escherichia coli TA271] gi|331671571|ref|ZP_08372369.1| dimethyladenosine transferase [Escherichia coli TA280] gi|331680624|ref|ZP_08381283.1| dimethyladenosine transferase [Escherichia coli H591] gi|332281262|ref|ZP_08393675.1| dimethyladenosine transferase [Shigella sp. D9] gi|125699|sp|P06992|RSMA_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=High level kasugamycin resistance protein ksgA; AltName: Full=Kasugamycin dimethyltransferase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365842|sp|Q326I2|RSMA_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365844|sp|Q3Z5V8|RSMA_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123147300|sp|Q0T8E4|RSMA_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166987693|sp|A7ZW03|RSMA_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028807|sp|B1IRC5|RSMA_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732575|sp|B7NHF7|RSMA_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732576|sp|B7M0E8|RSMA_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732577|sp|B1XC52|RSMA_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732580|sp|B1LFY7|RSMA_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|259494249|sp|C4ZPX7|RSMA_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|40917|emb|CAA28417.1| unnamed protein product [Escherichia coli] gi|146571|gb|AAA24049.1| methyltransferase (ksgA) [Escherichia coli] gi|1786236|gb|AAC73162.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|73854147|gb|AAZ86854.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Shigella sonnei Ss046] gi|81244068|gb|ABB64776.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Shigella boydii Sb227] gi|85674303|dbj|BAE76038.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K12 substr. W3110] gi|110613665|gb|ABF02332.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Shigella flexneri 5 str. 8401] gi|157065202|gb|ABV04457.1| dimethyladenosine transferase [Escherichia coli HS] gi|169756519|gb|ACA79218.1| dimethyladenosine transferase [Escherichia coli ATCC 8739] gi|169887549|gb|ACB01256.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170520973|gb|ACB19151.1| dimethyladenosine transferase [Escherichia coli SMS-3-5] gi|188487982|gb|EDU63085.1| dimethyladenosine transferase [Escherichia coli 53638] gi|192926150|gb|EDV80791.1| dimethyladenosine transferase [Escherichia coli E22] gi|192955711|gb|EDV86185.1| dimethyladenosine transferase [Escherichia coli E110019] gi|194412078|gb|EDX28388.1| dimethyladenosine transferase [Escherichia coli B171] gi|194417209|gb|EDX33320.1| dimethyladenosine transferase [Shigella dysenteriae 1012] gi|194421385|gb|EDX37402.1| dimethyladenosine transferase [Escherichia coli 101-1] gi|218359404|emb|CAQ96943.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli IAI1] gi|218368459|emb|CAR16195.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli IAI39] gi|226840574|gb|EEH72576.1| methyltransferase [Escherichia sp. 1_1_43] gi|238863510|gb|ACR65508.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli BW2952] gi|242375890|emb|CAQ30571.1| 16S rRNA m[6][2]A1518,m[6][2]A1519 dimethyltransferase [Escherichia coli BL21(DE3)] gi|253325961|gb|ACT30563.1| dimethyladenosine transferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972077|gb|ACT37748.1| dimethyladenosine transferase [Escherichia coli B str. REL606] gi|253976286|gb|ACT41956.1| dimethyladenosine transferase [Escherichia coli BL21(DE3)] gi|257751914|dbj|BAI23416.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O26:H11 str. 11368] gi|257757435|dbj|BAI28932.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O103:H2 str. 12009] gi|257762561|dbj|BAI34056.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O111:H- str. 11128] gi|260450740|gb|ACX41162.1| dimethyladenosine transferase [Escherichia coli DH1] gi|284919834|emb|CBG32889.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Escherichia coli 042] gi|291321168|gb|EFE60610.1| dimethyladenosine transferase [Escherichia coli B088] gi|291430647|gb|EFF03645.1| dimethyladenosine transferase [Escherichia coli B185] gi|291472397|gb|EFF14879.1| dimethyladenosine transferase [Escherichia coli B354] gi|300316271|gb|EFJ66055.1| dimethyladenosine transferase [Escherichia coli MS 175-1] gi|300402671|gb|EFJ86209.1| dimethyladenosine transferase [Escherichia coli MS 84-1] gi|300451881|gb|EFK15501.1| dimethyladenosine transferase [Escherichia coli MS 116-1] gi|300455689|gb|EFK19182.1| dimethyladenosine transferase [Escherichia coli MS 21-1] gi|300463319|gb|EFK26812.1| dimethyladenosine transferase [Escherichia coli MS 187-1] gi|300525544|gb|EFK46613.1| dimethyladenosine transferase [Escherichia coli MS 119-7] gi|300531295|gb|EFK52357.1| dimethyladenosine transferase [Escherichia coli MS 107-1] gi|300839664|gb|EFK67424.1| dimethyladenosine transferase [Escherichia coli MS 124-1] gi|301073517|gb|EFK88323.1| dimethyladenosine transferase [Escherichia coli MS 146-1] gi|306908474|gb|EFN38972.1| dimethyladenosine transferase [Escherichia coli W] gi|308120282|gb|EFO57544.1| dimethyladenosine transferase [Escherichia coli MS 145-7] gi|309700264|emb|CBI99552.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Escherichia coli ETEC H10407] gi|315059277|gb|ADT73604.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli W] gi|315134747|dbj|BAJ41906.1| dimethyladenosine transferase [Escherichia coli DH1] gi|315255673|gb|EFU35641.1| dimethyladenosine transferase [Escherichia coli MS 85-1] gi|315616172|gb|EFU96791.1| dimethyladenosine transferase [Escherichia coli 3431] gi|320172861|gb|EFW48093.1| Dimethyladenosine transferase [Shigella dysenteriae CDC 74-1112] gi|320182964|gb|EFW57832.1| Dimethyladenosine transferase [Shigella flexneri CDC 796-83] gi|320200429|gb|EFW75015.1| Dimethyladenosine transferase [Escherichia coli EC4100B] gi|323157886|gb|EFZ43989.1| dimethyladenosine transferase [Escherichia coli EPECa14] gi|323160077|gb|EFZ46039.1| dimethyladenosine transferase [Escherichia coli E128010] gi|323166103|gb|EFZ51882.1| dimethyladenosine transferase [Shigella sonnei 53G] gi|323171211|gb|EFZ56859.1| dimethyladenosine transferase [Escherichia coli LT-68] gi|323176360|gb|EFZ61952.1| dimethyladenosine transferase [Escherichia coli 1180] gi|323380166|gb|ADX52434.1| dimethyladenosine transferase [Escherichia coli KO11] gi|323935104|gb|EGB31471.1| dimethyladenosine transferase [Escherichia coli E1520] gi|323939727|gb|EGB35929.1| dimethyladenosine transferase [Escherichia coli E482] gi|323960000|gb|EGB55646.1| dimethyladenosine transferase [Escherichia coli H489] gi|323970725|gb|EGB65979.1| dimethyladenosine transferase [Escherichia coli TA007] gi|323975781|gb|EGB70877.1| dimethyladenosine transferase [Escherichia coli TW10509] gi|324017680|gb|EGB86899.1| dimethyladenosine transferase [Escherichia coli MS 117-3] gi|324118403|gb|EGC12297.1| dimethyladenosine transferase [Escherichia coli E1167] gi|331040249|gb|EGI12456.1| dimethyladenosine transferase [Escherichia coli H736] gi|331061337|gb|EGI33300.1| dimethyladenosine transferase [Escherichia coli TA143] gi|331066499|gb|EGI38376.1| dimethyladenosine transferase [Escherichia coli TA271] gi|331071416|gb|EGI42773.1| dimethyladenosine transferase [Escherichia coli TA280] gi|331072087|gb|EGI43423.1| dimethyladenosine transferase [Escherichia coli H591] gi|332095340|gb|EGJ00363.1| dimethyladenosine transferase [Shigella boydii 5216-82] gi|332097801|gb|EGJ02774.1| dimethyladenosine transferase [Shigella dysenteriae 155-74] gi|332098860|gb|EGJ03811.1| dimethyladenosine transferase [Shigella boydii 3594-74] gi|332103614|gb|EGJ06960.1| dimethyladenosine transferase [Shigella sp. D9] gi|332341383|gb|AEE54717.1| dimethyladenosine transferase KsgA [Escherichia coli UMNK88] gi|332762612|gb|EGJ92877.1| dimethyladenosine transferase [Shigella flexneri 4343-70] gi|333009061|gb|EGK28517.1| dimethyladenosine transferase [Shigella flexneri K-218] gi|224747|prf||1112172A methyltransferase Length = 273 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|229546781|ref|ZP_04435506.1| dimethyladenosine transferase [Enterococcus faecalis TX1322] gi|256854221|ref|ZP_05559585.1| dimethyladenosine transferase [Enterococcus faecalis T8] gi|307290952|ref|ZP_07570842.1| dimethyladenosine transferase [Enterococcus faecalis TX0411] gi|229308130|gb|EEN74117.1| dimethyladenosine transferase [Enterococcus faecalis TX1322] gi|256709781|gb|EEU24825.1| dimethyladenosine transferase [Enterococcus faecalis T8] gi|306498022|gb|EFM67549.1| dimethyladenosine transferase [Enterococcus faecalis TX0411] gi|315029806|gb|EFT41738.1| dimethyladenosine transferase [Enterococcus faecalis TX4000] Length = 295 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 152/289 (52%), Gaps = 24/289 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T ++ +++ S D + ++ QKEV +RI A+ + YG LS+ + +A Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S +I H P + K+T+ +F RRKTL +L Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRHATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 247 HFYGKDEQTVAWLKVSLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|307546072|ref|YP_003898551.1| dimethyladenosine transferase [Halomonas elongata DSM 2581] gi|307218096|emb|CBV43366.1| dimethyladenosine transferase [Halomonas elongata DSM 2581] Length = 268 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 135/259 (52%), Gaps = 8/259 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ ++ + G G ++E+G G G LT+ LL + VIE D+ Sbjct: 11 RKRFGQNFLRDPGIISRLVRAIGPRPGQRLVEVGPGQGALTEPLLEAADGHLEVIELDRD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L+ P I + DALK DF + +R++ NLPYNI T L+ + ++A Sbjct: 71 LIPGLRVQFFDKPG-FVIHEGDALKFDFRELRGDGPALRVVGNLPYNISTPLISHLLAAG 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV ER+ A+ GRLSVL + + +F + P F P PKV Sbjct: 130 DA---VSDMHFMLQKEVVERLAAEPGGTERGRLSVLAQYHCRVESLFTVPPEAFVPRPKV 186 Query: 202 TSTVIHFIPHLNPIPCCL-ESLK-KITQEAFGKRRKTLRQSLK-RLGGENLLHQAGIETN 258 S ++ PH P L ESL ++ +EAF +RRKTLR +LK RL GE L I+ Sbjct: 187 ESAIVRLTPHETPPHRALDESLMFEVVREAFAQRRKTLRNNLKSRLSGEA-LSALDIDPG 245 Query: 259 LRAENLSIEDFCRITNILT 277 R + LS+ +F RI + L Sbjct: 246 RRPQTLSVAEFVRIADHLA 264 >gi|255994696|ref|ZP_05427831.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989] gi|255993409|gb|EEU03498.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989] Length = 285 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 157/278 (56%), Gaps = 15/278 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++K + + I P K GQNFL+D NI++KI +S+G V+EIG G G LT+ ++ Sbjct: 12 TIKQLCDCFDIRPNKRYGQNFLIDYNIVQKITDSAGLTSSDRVLEIGPGIGTLTRE-ISK 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A V+V+E D++ P+L D + H + ++I+ D K + F +++I NLPY Sbjct: 71 KAGSVVVVEVDKKLIPVL-DSTLSHCSNIKIVNQDIFKYNVGDDF--LDTVKVIGNLPYY 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ W+ + P + ++ QKEV +R A++ S +++ + ++ +F Sbjct: 128 ITTPIVM-WLLEEV--PQATEIVIMMQKEVAKRFAAKQGSRDSSAVTLAVQYYSEIEELF 184 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG 246 D+S H F+P+PKV STV+ H NP+ E L + +++F KRRKTL SL + G Sbjct: 185 DVSKHCFYPAPKVDSTVVRLKRHTENPVAVKSEKLLFECIKKSFEKRRKTLINSLFGING 244 Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L++AGI+ LRAENL+++ + I N++ D Sbjct: 245 LEKERLVKILNEAGIDPRLRAENLTLQQYAGIANLIYD 282 >gi|289167168|ref|YP_003445435.1| dimethyladenosine transferase [Streptococcus mitis B6] gi|288906733|emb|CBJ21567.1| dimethyladenosine transferase [Streptococcus mitis B6] Length = 290 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285 >gi|15799736|ref|NP_285748.1| dimethyladenosine transferase [Escherichia coli O157:H7 EDL933] gi|15829310|ref|NP_308083.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai] gi|168751689|ref|ZP_02776711.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4113] gi|168756882|ref|ZP_02781889.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4401] gi|168762818|ref|ZP_02787825.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4501] gi|168766746|ref|ZP_02791753.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4486] gi|168776974|ref|ZP_02801981.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4196] gi|168781755|ref|ZP_02806762.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4076] gi|168785109|ref|ZP_02810116.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869] gi|168801939|ref|ZP_02826946.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508] gi|195937727|ref|ZP_03083109.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4024] gi|208807925|ref|ZP_03250262.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4206] gi|208813755|ref|ZP_03255084.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4045] gi|208819017|ref|ZP_03259337.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4042] gi|209397383|ref|YP_002268661.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4115] gi|217326445|ref|ZP_03442529.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. TW14588] gi|254791190|ref|YP_003076027.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. TW14359] gi|261226811|ref|ZP_05941092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255214|ref|ZP_05947747.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291280877|ref|YP_003497695.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|27151579|sp|Q8XA14|RSMA_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732574|sp|B5YZ89|RSMA_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|12512746|gb|AAG54356.1|AE005182_5 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. EDL933] gi|13359512|dbj|BAB33479.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai] gi|187767719|gb|EDU31563.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4196] gi|188014303|gb|EDU52425.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4113] gi|189000721|gb|EDU69707.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4076] gi|189356082|gb|EDU74501.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4401] gi|189364097|gb|EDU82516.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4486] gi|189366989|gb|EDU85405.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4501] gi|189374734|gb|EDU93150.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869] gi|189375991|gb|EDU94407.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508] gi|208727726|gb|EDZ77327.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4206] gi|208735032|gb|EDZ83719.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4045] gi|208739140|gb|EDZ86822.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4042] gi|209158783|gb|ACI36216.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4115] gi|209746894|gb|ACI71754.1| dimethyladenosine transferase [Escherichia coli] gi|209746896|gb|ACI71755.1| dimethyladenosine transferase [Escherichia coli] gi|209746898|gb|ACI71756.1| dimethyladenosine transferase [Escherichia coli] gi|209746900|gb|ACI71757.1| dimethyladenosine transferase [Escherichia coli] gi|209746902|gb|ACI71758.1| dimethyladenosine transferase [Escherichia coli] gi|217322666|gb|EEC31090.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. TW14588] gi|254590590|gb|ACT69951.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290760750|gb|ADD54711.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|320190426|gb|EFW65076.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. EC1212] gi|320642093|gb|EFX11444.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H7 str. G5101] gi|320647456|gb|EFX16251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H- str. 493-89] gi|320652790|gb|EFX21028.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H- str. H 2687] gi|320658179|gb|EFX25908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663488|gb|EFX30772.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O55:H7 str. USDA 5905] gi|320668800|gb|EFX35595.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H7 str. LSU-61] gi|326345229|gb|EGD68972.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1125] gi|326346918|gb|EGD70652.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1044] Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|333011435|gb|EGK30849.1| dimethyladenosine transferase [Shigella flexneri K-272] gi|333021674|gb|EGK40923.1| dimethyladenosine transferase [Shigella flexneri K-227] Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|324112546|gb|EGC06523.1| dimethyladenosine transferase [Escherichia fergusonii B253] Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELATKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|307710852|ref|ZP_07647279.1| dimethyladenosine transferase [Streptococcus mitis SK321] gi|307617297|gb|EFN96470.1| dimethyladenosine transferase [Streptococcus mitis SK321] Length = 290 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+E+F + + L Sbjct: 245 FGKTEEVKDKLIKALDQAGLSPSVRGEALSLEEFASLADAL 285 >gi|227888939|ref|ZP_04006744.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200] gi|227850527|gb|EEJ60613.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200] Length = 294 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 150/284 (52%), Gaps = 20/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E DQ IL + Q +R +++ D LK +F + F ++S + Sbjct: 74 -KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKSVN 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A+ + YG LS+ Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAKPKTKEYGPLSIAVQS 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239 R + ++ F P PKV S V+ P L P + + F +RRKTL Sbjct: 190 RMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYVFFDHVVKMCFAQRRKTLAN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK L E L++ G++ +R E L++ F ++ ++L D Sbjct: 250 NLKTLIKDKNEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKD 293 >gi|148284255|ref|YP_001248345.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Boryong] gi|146739694|emb|CAM79504.1| dimethyladenosine transferase (rRNA methylation) [Orientia tsutsugamushi str. Boryong] Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/274 (36%), Positives = 149/274 (54%), Gaps = 12/274 (4%) Query: 10 LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQML 65 L T+ H +KI K +GQ+FLLD NI KI + S+ G V+E+G GPG LT+ + Sbjct: 4 LPTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNSITGKVVLEVGPGPGGLTRAI 63 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L +K+IVIEKD F +L +I + ++LE+I DAL D S+ I II+NL Sbjct: 64 LAHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNIE--SNRIIIISNL 121 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNIGT+L+ W+ + F E + ++ Q EV ERI + S YGR++VL + Sbjct: 122 PYNIGTQLIVQWLHQIS---FVEYMIIMLQDEVVERIISNHCSKTYGRITVLAQIVSDVR 178 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + F P PKV S+V+ P + + +E+++KIT+ AF RRK L+ L L Sbjct: 179 KCFKVPSRAFNPPPKVDSSVMLVSPKKHQLDRHTIENVQKITKLAFSTRRKKLKNCLSHL 238 Query: 245 GGENLLHQAGIETNL--RAENLSIEDFCRITNIL 276 + + L R E L+ E + +++ IL Sbjct: 239 LTSINIPDEILNAQLHQRPEQLTPEQYVQLSRIL 272 >gi|114319429|ref|YP_741112.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1] gi|114225823|gb|ABI55622.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1] Length = 274 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 10/267 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +H + P+K GQNFL D ++ ++ ++ G ++EIG G G LT LL R + Sbjct: 3 NHRRHRPRKRFGQNFLHDPTLISRMVKAIRPRPGDPLVEIGPGEGALTLPLLRAAGR-LT 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRL 133 +E D+ L+ ++ L + Q DAL+ DF + + +R++ NLPYNI T L Sbjct: 62 AVELDRDLVAPLQ-ARARTAGELTVHQADALRFDFRQLAPAPPARLRVVGNLPYNISTPL 120 Query: 134 LFNWI-SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 LF+ + SAD + + QKEV ER+ A S YGRLSV+ +R T +F + P Sbjct: 121 LFHLLESADVI----QDMHFTLQKEVVERLAAPPGSKTYGRLSVMVQYRCAVTNLFRLPP 176 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S + +PH P ++ ++ +AF +RRKTLR +L+ L + + Sbjct: 177 GAFRPPPKVDSAFVRLVPHAEPTVDVGDEQAFARLVTQAFSQRRKTLRNTLRPLMSADTI 236 Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277 GI+ RAENLS+E F ++ T Sbjct: 237 IGVGIDPRERAENLSLEQFAALSQAHT 263 >gi|86516031|gb|ABC97666.1| KsgA [Shigella boydii] Length = 256 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 138/262 (52%), Gaps = 18/262 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ +G R ++ VIE D+ Sbjct: 3 GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59 Query: 84 PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P P Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH P P + L +IT EAF +RRKT+R SL L +L + GI+ Sbjct: 173 KVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSAEVLTEMGIDP 232 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +RAEN+S+ +C++ N L +N Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254 >gi|300919604|ref|ZP_07136096.1| dimethyladenosine transferase [Escherichia coli MS 115-1] gi|300413350|gb|EFJ96660.1| dimethyladenosine transferase [Escherichia coli MS 115-1] Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQRGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|191169146|ref|ZP_03030905.1| dimethyladenosine transferase [Escherichia coli B7A] gi|190900821|gb|EDV60611.1| dimethyladenosine transferase [Escherichia coli B7A] Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAAHLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|289627688|ref|ZP_06460642.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868491|gb|EGH03200.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 268 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHWRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|149377956|ref|ZP_01895682.1| dimethyladenosine transferase [Marinobacter algicola DG893] gi|149357730|gb|EDM46226.1| dimethyladenosine transferase [Marinobacter algicola DG893] Length = 276 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 143/261 (54%), Gaps = 8/261 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++I + ++EIG G G LT+ +L + + + V+E D+ Sbjct: 10 RKRFGQNFLHDPGVIERIIRAIHPRPDDALVEIGPGLGALTEEMLAVNS-NLQVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+L+ +PN I + DALK DF + P+RII NLPYNI T L+F+ + Sbjct: 69 LIPVLRTKFFNYPN-FRIHEADALKFDFGELV-ADKPLRIIGNLPYNISTPLIFHLLGHS 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +R+ A +YGRL ++T + + +F++ P F P+PKV Sbjct: 127 G---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGAFRPAPKV 183 Query: 202 TSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +PH P P + L+ + + AF RRKTLR++L + L+ GI L Sbjct: 184 DSAIVRLVPHKTLPHPAKNYKLLQAVVRTAFSARRKTLRKALAGMVSVEQLNSIGINDGL 243 Query: 260 RAENLSIEDFCRITNILTDNQ 280 R ENL + ++ I ++L D++ Sbjct: 244 RPENLGLAEYVAIADLLADSR 264 >gi|152995082|ref|YP_001339917.1| dimethyladenosine transferase [Marinomonas sp. MWYL1] gi|189028811|sp|A6VU53|RSMA_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150836006|gb|ABR69982.1| dimethyladenosine transferase [Marinomonas sp. MWYL1] Length = 266 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++I G G ++EIG G G LT+ ++++ R + V+E D+ Sbjct: 10 RKRFGQNFLHDHGVIRRIVACIGPKKGQRIVEIGPGKGALTEGIISVTER-MDVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PILK + P L + + DA+K DF IR++ NLPYNI T L+F+ +S Sbjct: 69 LIPILKVNLFRFPE-LTVHEADAMKFDFTSLTTPEQAIRVVGNLPYNISTPLIFHLLSQA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + + QKEV +R+ A+ YGRLSV+ + +F + P F P+PKV Sbjct: 128 QA---IEDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYYCAVESLFIVGPESFDPAPKV 184 Query: 202 TSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ PH + P P ++ L+ + + F +RRKTLR + K + + I+ L Sbjct: 185 DSAIVRMTPHKILPHPVNNIKMLEDMVRIGFQQRRKTLRNNYKGVLDNDDFSALNIDPTL 244 Query: 260 RAENLSIEDFCRITN 274 R E L +EDF RI N Sbjct: 245 RPERLDVEDFVRIAN 259 >gi|332653433|ref|ZP_08419178.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16] gi|332518579|gb|EGJ48182.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16] Length = 289 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/285 (38%), Positives = 156/285 (54%), Gaps = 26/285 (9%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + +K +LS + K MGQNFL++ + + IA++SG+ G+ V+E+G G G LT+ L + Sbjct: 7 NDIKALLSRHGFRFSKSMGQNFLIEDWVPRDIADASGAAPGVGVVEVGPGIGPLTREL-S 65 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRII 122 L A KV+ IE D+ PIL + S +PN EI D LK D EK +S PI Sbjct: 66 LRADKVVSIELDRSLLPILAETLSDYPN-AEIFPGDVLKTDLPALVSEKLAGLS-PI-AC 122 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYNI T + I A + S+T++ Q+EV RI A + YG SV + T Sbjct: 123 ANLPYNITTPAITALIEAGCF----GSITVMIQREVARRICAAPGTGDYGAFSVYCQYHT 178 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239 K ++FD+ P F P+PKVTS+V+ +P P ++ K ++ + AF +RRKTL Sbjct: 179 KPEILFDVPPSCFIPAPKVTSSVLRMVPQTPPAE--VDDPKHFFQVVRAAFAQRRKTLLN 236 Query: 240 SLKR-LGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SL LGG N + Q G+ N+R E LSI DF ++ L Sbjct: 237 SLSSALGGTYQKEAIANAIAQCGLAENIRGERLSISDFAALSKAL 281 >gi|33152288|ref|NP_873641.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP] gi|62900573|sp|Q7VM33|RSMA_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33148511|gb|AAP96030.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP] Length = 289 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 26/288 (9%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T N+K H L H +K GQNFL D+N++ I + + ++EIG G G L Sbjct: 3 TSNSKKH-----LGH---TARKRFGQNFLSDMNVIHNIVAAINPRNEDFLLEIGPGLGAL 54 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF----- 113 T+ + K+ VIE D+ L+ HP ++L +I+ DAL+ +F +F Sbjct: 55 TEPVAE-QVEKLTVIELDRDLAERLR----HHPFLHHKLTVIEQDALRFNFRDYFDSLNL 109 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 N IRI NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 110 NHHQAIRIFGNLPYNISTPLMFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGR 166 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ +P+ P P + L ++T AF Sbjct: 167 LTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLMPYKTLPYPVKDVYWLNRVTTHAFN 226 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI RAENL+I D+ R+ N L DN Sbjct: 227 QRRKTLRNALSTLFTAQQLEMLGINLTDRAENLTISDYARLANWLCDN 274 >gi|325495979|gb|EGC93838.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia fergusonii ECD227] Length = 273 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|323140326|ref|ZP_08075258.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067] gi|322415184|gb|EFY05971.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067] Length = 283 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/273 (35%), Positives = 150/273 (54%), Gaps = 15/273 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL +K+ K +GQNFL+D NI+++I E++ V+E+G G G LTQ L GA Sbjct: 15 ILHRFKLRADKKLGQNFLIDENIVRRIVEAAELSPADKVLEVGPGIGTLTQGLAESGA-D 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGT 131 V+ +E D++ P+L D++ + + + I+ D L+V+ + +++P ++ ANLPY I T Sbjct: 74 VVAVELDKRLLPVL-DVTLEGYDNVRIVNGDILQVNIME--TVAAPEFKVCANLPYYITT 130 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++F + P E L + QKEV ER+ A+ S YG LSV + T+ + F + Sbjct: 131 PIIFALLE-KRLP--MERLVAMVQKEVAERMAAKPGSRDYGALSVAIQYYTEPEIAFIVP 187 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG---- 245 P F P+P V S VI P+ C E+L +I + AF RRK L SLK +G Sbjct: 188 PTSFIPAPAVDSAVIVCKRRSEPPVKVCDEALFFRIVKAAFSLRRKMLSNSLKNMGINSE 247 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L +AG++ RAE LS+EDF +TN + Sbjct: 248 QCSQWLQRAGVDGKRRAETLSLEDFAALTNTFS 280 >gi|304315637|ref|YP_003850782.1| dimethyladenosine transferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777139|gb|ADL67698.1| dimethyladenosine transferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 272 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/269 (36%), Positives = 150/269 (55%), Gaps = 20/269 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNF+ D IL KIA+ + VIEIGAG G LT+ ++ A+ V+ E D + Sbjct: 9 KKKLGQNFIFDEGILSKIADLADITKDDNVIEIGAGLGTLTREIVE-RAKNVVAYEIDDE 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137 IL+D ++ N L I+ DD +K D +K+F+ +++ANLPY I + ++ Sbjct: 68 AVGILRDKLREYKN-LIILNDDIMKADLKGVVDKYFD-GDKCKVVANLPYYITSPIIMKL 125 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + +T+L QKEV ERI A+ S YG L+V + +K M+ ++ P VF P Sbjct: 126 LESH----LMKDITILIQKEVAERICAEPGSKEYGVLTVAVNYYSKPEMLLELPPEVFSP 181 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGE-----NL 249 PKV+ST+I + L+ P +++ K K+ + +FG+RRK + SLK L + N Sbjct: 182 KPKVSSTLIK-LHVLDEPPVFVKNEKLFFKVVKASFGQRRKVITNSLKSLNIDQSLILNA 240 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278 L + GI+ R E LSIE F + N + D Sbjct: 241 LLKCGIDLKQRGETLSIEKFAELANAIDD 269 >gi|295401992|ref|ZP_06811954.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius C56-YS93] gi|294975994|gb|EFG51610.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius C56-YS93] Length = 295 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 22/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL+KI + +G IEIG G G LT+ L A Sbjct: 14 REILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPGIGALTEQL-ARRA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E DQ+ PIL+D S + N + II D LK D + F +S I ++ANLP Sbjct: 73 KKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEFTDASDIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ ++ D P + ++ QKEV +RI+AQ + YG LS+ + T+A Sbjct: 132 YYVTTPIIMKLLT-DNLP--IRGIVVMLQKEVADRISAQPGTKDYGSLSIAIQYYTEAEK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI I P P ++ ++ + +F +RRKT+ +L Sbjct: 189 IMTVPRTVFIPQPNVDSAVIRLIKRKQP-PVDVDDESFFFQVVRASFAQRRKTILNNLIS 247 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 ++ E +L + GI+ R E L++E+F ++N L + Sbjct: 248 NLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291 >gi|312870255|ref|ZP_07730386.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3] gi|311094278|gb|EFQ52591.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3] Length = 297 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 151/287 (52%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y I KK GQNFL DLN+LK I ++ VIEIG G G LT+ L A Sbjct: 14 RAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEITRDDNVIEIGPGIGALTEQLAQ-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +V+ +E DQ P+L ++ + + N + ++ D L+ + ++F + S PI+++ANL Sbjct: 73 GEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFTDPSRPIKVVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +L N ++A P W ++ ++ QKEV +R+TAQ + YG L++ ++ A Sbjct: 132 PYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEYQMTAE 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242 + F++S VF P+P V S ++ P P+P + +K+ + F RRK+L +L+ Sbjct: 189 IAFNVSRRVFVPAPNVDSAIVVLRPRTTPLPVQPFNKQKLFGFIRGCFAHRRKSLWNNLQ 248 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + +L I R E L++E F + N L Q Sbjct: 249 ATVGKQPAVKEKMQAILTTLAISPQTRPERLTLEQFIELANALHAAQ 295 >gi|325912354|ref|ZP_08174750.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D] gi|325475825|gb|EGC78995.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D] Length = 295 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+DL I+KKI S+G ++ VIEIG G G+LT+ LL GA Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVECSQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120 KV+ E D IL ++ +Q N R II D LK DF +F+++ PI Sbjct: 74 -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQPII 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + + P LTL+ QKEV ERI+A S YG L++ Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 F++ F PSPKV S V+ P + + E L +I + AF +RRKTL Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L + LL+ +++N+R E LSI + ++ Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288 >gi|310765114|gb|ADP10064.1| dimethyladenosine transferase [Erwinia sp. Ejp617] Length = 275 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 146/283 (51%), Gaps = 26/283 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN++ H H+ +K GQNFL D I+ I + G V+EIG G G LT Sbjct: 1 MNSRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R + V+E D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDSMTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFAALAQEKG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV R+ A S YGRL+V Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P P + L +IT EAFGKRR Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYARLPHPVDDIRVLSRITTEAFGKRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTLR SL L + L + I+ LRAEN+S+ +C++ N LT Sbjct: 223 KTLRNSLGHLFSVDALTEMNIDPTLRAENISVAQYCQLANWLT 265 >gi|229548872|ref|ZP_04437597.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200] gi|255971386|ref|ZP_05421972.1| dimethyladenosine transferase [Enterococcus faecalis T1] gi|257421180|ref|ZP_05598170.1| dimethyladenosine transferase dimethyltransferase [Enterococcus faecalis X98] gi|312952797|ref|ZP_07771659.1| dimethyladenosine transferase [Enterococcus faecalis TX0102] gi|229305893|gb|EEN71889.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200] gi|255962404|gb|EET94880.1| dimethyladenosine transferase [Enterococcus faecalis T1] gi|257163004|gb|EEU92964.1| dimethyladenosine transferase dimethyltransferase [Enterococcus faecalis X98] gi|310629313|gb|EFQ12596.1| dimethyladenosine transferase [Enterococcus faecalis TX0102] gi|315153008|gb|EFT97024.1| dimethyladenosine transferase [Enterococcus faecalis TX0031] gi|315155239|gb|EFT99255.1| dimethyladenosine transferase [Enterococcus faecalis TX0043] gi|315157566|gb|EFU01583.1| dimethyladenosine transferase [Enterococcus faecalis TX0312] Length = 295 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKYGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T ++ +++ S D + ++ QKEV +RI A+ + YG LS+ + +A Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S +I P + K+T+ +F RRKTL +L Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|52424685|ref|YP_087822.1| dimethyladenosine transferase [Mannheimia succiniciproducens MBEL55E] gi|62900507|sp|Q65UX3|RSMA_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52306737|gb|AAU37237.1| KsgA protein [Mannheimia succiniciproducens MBEL55E] Length = 288 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 151/291 (51%), Gaps = 33/291 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D N+++ I + G ++EIG G G LT Sbjct: 1 MNSKRH-----LGH---TARKRFGQNFLHDDNVIQGIVAAIYPQKGQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS--- 116 + + R + V+E D+ L+ HP +L +I+ DA++ DF K + Sbjct: 53 EPVADQTDR-LTVVELDRDLAQRLR----HHPFLHQKLNVIETDAMQFDFGKLYEDEHLA 107 Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFW---ESLTLLFQKEVGERITAQKNSPH 170 +R+ NLPYNI T L+F+ + F+ + + + QKEV +R+ A NS Sbjct: 108 EQGQKLRVFGNLPYNISTPLIFHLLK------FYDKIQDMHFMLQKEVVKRLCAAPNSKA 161 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQE 228 YGRL+++T + + + ++ P F P+PKV S V+ IPH P P L L ++T + Sbjct: 162 YGRLTIMTQYFCQVMPVLEVPPTAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVTSQ 221 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 AF +RRKTLR +L L L I+ RAENLSI D+ R+ N L DN Sbjct: 222 AFNQRRKTLRNALSTLFTPEQLTALNIDLTARAENLSIADYARLANWLADN 272 >gi|326789765|ref|YP_004307586.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427] gi|326540529|gb|ADZ82388.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427] Length = 288 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 154/283 (54%), Gaps = 18/283 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+S Y +K GQNFL+D +L KI +++ VIEIG G G +TQ LL A Sbjct: 11 RAIISKYPFAFQKKFGQNFLIDPQVLDKIIDAAEITKEDCVIEIGPGIGCVTQALLE-KA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPY 127 KVI IE D Q PIL++ P+ ++I +D LKVD SP I+++ANLPY Sbjct: 70 GKVISIEIDNQLIPILEEQFGAEPH-FKLIHNDVLKVDLAALIAEESPNRRIKVVANLPY 128 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + D P ES+T++ QKEV +R++++ + YG ++V + + ++ Sbjct: 129 YITTPIIMALLE-DELP--IESITVMVQKEVADRLSSKPGTKQYGAIAVSVNYFSTPELV 185 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ + F PSP V S VI H P+ ++ + +I + AF RRKTL +L G Sbjct: 186 VDVPRNCFMPSPNVDSAVIKLNVHEEPLVKTNNVKQMFRIIKAAFLLRRKTLLNTLAAHG 245 Query: 246 G--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + LL ++GI R E LSIE+F R+++ + +++ Sbjct: 246 DLGIDKERLKELLDESGIGAQTRGETLSIEEFARLSDYIDEHR 288 >gi|329723947|gb|EGG60472.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU144] Length = 296 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 149/278 (53%), Gaps = 22/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69 + +L Y KK +GQNFL+D+NI+ KI E+S +D T VIE+G G G+LT+ L Sbjct: 13 RALLDQYGFNFKKSLGQNFLIDVNIINKIIEAS-HIDCTTGVIEVGPGMGSLTEQLAK-N 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125 A+KV+ E DQ+ P+LKD S + N + II +D LK D K I ++ANL Sbjct: 71 AKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKTDIAKAVATHLQDCDKIMVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L N + D P + ++ QKEVGER+ AQ + YG LS++ + T+ + Sbjct: 130 PYYITTPILLNLMQQDV--PI-DGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETS 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR---QS 240 + + VF P P V S V+ + P+ E K+ + AF +RRKT+ Q+ Sbjct: 187 KVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNNYQN 246 Query: 241 LKRLGGEN------LLHQAGIETNLRAENLSIEDFCRI 272 + G +N L AGI+ R E L+I+DF + Sbjct: 247 FFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATL 284 >gi|90020384|ref|YP_526211.1| dimethyladenosine transferase [Saccharophagus degradans 2-40] gi|119365059|sp|Q21MT0|RSMA_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89949984|gb|ABD79999.1| dimethyladenosine transferase [Saccharophagus degradans 2-40] Length = 268 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 136/257 (52%), Gaps = 7/257 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S G ++EIG G G +T L+ + V+E D+ Sbjct: 15 RKRFGQNFLEDQGIINAIVRSIGPKASDNLVEIGPGKGAITAQLIE-SCPSMQVVELDRD 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL + + N I Q DALK DF + P+R++ NLPYNI T L+F+ +S Sbjct: 74 LIPILLAQFAIY-NDFRIHQTDALKFDFGQLATPERPLRVVGNLPYNISTPLIFHLLS-- 130 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV R+ A +YGRLSV+T + + +F++ P F P PKV Sbjct: 131 -FGELIADMHFMLQKEVVLRLAAGPGDKNYGRLSVMTQYVCQVENLFEVPPECFNPRPKV 189 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ P+ + + L K+ + AF +RRKTLR +LK L E L I+ Sbjct: 190 DSAIVRLTPYRTQPFVAAHPDKLAKLVKTAFAQRRKTLRNNLKNLDEELDLEALDIDLTR 249 Query: 260 RAENLSIEDFCRITNIL 276 RAE+LS+E++ ++N L Sbjct: 250 RAESLSLEEYVNLSNTL 266 >gi|238897970|ref|YP_002923650.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494251|sp|C4K4K9|RSMA_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|229465728|gb|ACQ67502.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 267 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 142/263 (53%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D ++ +I S T+IEIG G G LT + L K++VIE D+ Sbjct: 12 KKRFGQNFLTDEFVIDQIISSIHPSPEQTLIEIGPGLGALT-LPLADQMDKILVIELDRH 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNW 137 L D +QHP ++L + Q D + V+F + P+RI+ NLPYNI T LLF+ Sbjct: 71 ----LADRLNQHPQLKDKLILYQQDVMTVNFSELSATFKQPLRILGNLPYNISTPLLFHL 126 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q+EV R+ A N+ YGRLSV+ + K + ++ P F P Sbjct: 127 FKDIHR---IDDMHFMLQREVVNRLLAAPNTKAYGRLSVMVQYHCKVIPILEVPPDAFTP 183 Query: 198 SPKVTSTVIHFIPHL---NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 PKV S +I +P+ +P P +E L +T++AF +RRKTL SL L + L + Sbjct: 184 IPKVYSAMIRLLPYRSLSHPYPVTDIERLNLVTRQAFNQRRKTLHNSLGALFTDQELAET 243 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 GI LRAEN+S+E +C + N L Sbjct: 244 GICPKLRAENVSVEQYCLLANRL 266 >gi|187732780|ref|YP_001878864.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94] gi|226732626|sp|B2U259|RSMA_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|187429772|gb|ACD09046.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94] Length = 273 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L G++ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGLDPAMRAENISVAQYCQMANYLAEN 267 >gi|148977505|ref|ZP_01814094.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3] gi|145963300|gb|EDK28566.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3] Length = 271 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/265 (35%), Positives = 145/265 (54%), Gaps = 13/265 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G +T+ + L K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA+K DFE+ ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLADKLTIHEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A S YGRL+V+ + K T + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVTPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P P L+ L ++ +E F +RRKT+R K L +++L + GI Sbjct: 184 PKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKDVLEELGIN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 ++R ENL+++ F + N L DN + Sbjct: 244 PSMRPENLTLQQFVDMANWLHDNHN 268 >gi|293364728|ref|ZP_06611445.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] gi|307702974|ref|ZP_07639921.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] gi|291316178|gb|EFE56614.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] gi|307623367|gb|EFO02357.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] Length = 290 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ LT A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTE-FLTERA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 69 AEVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEIKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285 >gi|222031885|emb|CAP74623.1| Dimethyladenosine transferase [Escherichia coli LF82] gi|312944659|gb|ADR25486.1| dimethyladenosine transferase [Escherichia coli O83:H1 str. NRG 857C] Length = 273 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L ++ Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAES 267 >gi|242241578|ref|ZP_04796023.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144] gi|242234959|gb|EES37270.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144] gi|319399650|gb|EFV87904.1| dimethyladenosine transferase [Staphylococcus epidermidis FRI909] Length = 296 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ KI E+S VIE+G G G+LT+ L A Sbjct: 13 RALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCATGVIEVGPGMGSLTEQLAK-NA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +KV+ E DQ+ P+LKD S + N + II +D LK D K I ++ANLP Sbjct: 72 KKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVATHLQDCDKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A + YG LS++ + T+ + Sbjct: 131 YYITTPILLNLMQQDV--PI-DGFVVMMQKEVGERLNAHVGTKAYGSLSIVAQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR---QSL 241 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ Q+ Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEAFFKLAKAAFAQRRKTINNNYQNF 247 Query: 242 KRLGGEN------LLHQAGIETNLRAENLSIEDFCRI 272 + G +N L AGI+ R E L+I+DF + Sbjct: 248 FKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATL 284 >gi|325663734|ref|ZP_08152138.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325470227|gb|EGC73460.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 298 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 153/289 (52%), Gaps = 21/289 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 5 TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V+ +E D+ PIL+D S + N + +I +D LK+D K N P Sbjct: 64 TQ-YLACAAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---VQSITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + K + ++ P+ F P PKV S VI H P P +E K +I + +F +RRK Sbjct: 179 QYYAKPYIAANVPPNCFMPRPKVGSAVIRLECHEEP-PVQVEDEKLMFRIIRASFNQRRK 237 Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL LK R G E + + G ++R E L++E+F ++NI+ Sbjct: 238 TLANGLKNSPEISLSREGIEQAIAELGKGASVRGEALNLEEFATLSNIV 286 >gi|228476972|ref|ZP_04061610.1| dimethyladenosine transferase [Streptococcus salivarius SK126] gi|228250991|gb|EEK10162.1| dimethyladenosine transferase [Streptococcus salivarius SK126] Length = 290 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL+D H N + +I +D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILEDTLRDHDN-VNVINEDVLKADLQTRVKEFKNPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ NS YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNSKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + L ++ + +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREQPLVEVKDEDFLFRVAKASFVHRRKTLWNNLTNH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF +++ L + Sbjct: 245 FGKSEEVKAKLEQALEIADIKPSIRGEALSISDFAHLSDALRE 287 >gi|168333630|ref|ZP_02691890.1| dimethyladenosine transferase [Epulopiscium sp. 'N.t. morphotype B'] Length = 283 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 154/281 (54%), Gaps = 19/281 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +LS Y I KK GQNFL+D ++L KI ++ V+EIG G G++TQ LL A Sbjct: 11 KAVLSKYPFILKKKYGQNFLIDEHVLTKIISAANISKNDCVLEIGPGIGSVTQELLE-HA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++VI +E D++ PIL + + N +I +D LK+D ++ + I+++ANLPY I Sbjct: 70 QEVIAVEIDKELIPILNNQFGSYDN-FALINEDFLKLDLKEVLKGXTNIKVVANLPYYIT 128 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + ++ PF ++T++ QKEV +RITA + YG +S + K ++ ++ Sbjct: 129 TPIIMALLESEL--PFI-NITVMVQKEVADRITALPGTKEYGSISASIAYYAKVRLVANV 185 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL------ 241 H F P P V S VI + NP P L E K+ + AF +RRKT+ +L Sbjct: 186 PMHSFLPRPTVNSAVIELELYRNP-PVDLKNKEVFFKVIRAAFSQRRKTILNTLSNNFNI 244 Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 K+L +NLL A I N+R E L +F ++N++ Q Sbjct: 245 DKKQL--KNLLEVADIAENVRGETLGTSEFAILSNLICSTQ 283 >gi|326336599|ref|ZP_08202768.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691264|gb|EGD33234.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 259 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 106/259 (40%), Positives = 139/259 (53%), Gaps = 10/259 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 PKKY+GQ+FL DLNI ++IA ++ S DG V+EIGAG G LTQ LL L + VIE D Sbjct: 8 PKKYLGQHFLTDLNIAQQIA-NTLSFDGYKIVLEIGAGTGVLTQFLL-LKKTETFVIEID 65 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 ++ L+ Q N II D LK D +F+ +S II N PYNI ++++F + Sbjct: 66 KESVEYLQVHFPQLKNH--IIAKDFLKFDIVSYFSKAS-FAIIGNFPYNISSQIIFKLLE 122 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P +FQKEV ERI + S YG LSVLT +F + +VF P P Sbjct: 123 IRFFVP---EFAGMFQKEVAERICEKAGSKAYGILSVLTQAFYDTEYLFTVPENVFNPPP 179 Query: 200 KVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S VIH N +PC I + FG+RRKTLR SLK E + + Sbjct: 180 KVKSGVIHLKRKENYSLPCDERLFFTIVKTTFGQRRKTLRNSLKSFLSEKEELKVHSVFD 239 Query: 259 LRAENLSIEDFCRITNILT 277 R E LS+E+F +T LT Sbjct: 240 RRPETLSVEEFITLTQWLT 258 >gi|300923999|ref|ZP_07140000.1| dimethyladenosine transferase [Escherichia coli MS 182-1] gi|301330178|ref|ZP_07222840.1| dimethyladenosine transferase [Escherichia coli MS 78-1] gi|300419768|gb|EFK03079.1| dimethyladenosine transferase [Escherichia coli MS 182-1] gi|300843818|gb|EFK71578.1| dimethyladenosine transferase [Escherichia coli MS 78-1] Length = 273 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L + GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVFTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|330955094|gb|EGH55354.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae Cit 7] Length = 268 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R+ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFANKPN-FNLHQGDALKFDFNTLGAEPRSLRVGGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHHVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263 >gi|330898897|gb|EGH30316.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 268 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 +G++ +LR E L + F R + L++ Sbjct: 238 SGVDGSLRPEQLDLAVFVRRADTLSE 263 >gi|323190266|gb|EFZ75542.1| dimethyladenosine transferase [Escherichia coli RN587/1] Length = 273 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F E + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L ++ Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAES 267 >gi|242371677|ref|ZP_04817251.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W1] gi|242350626|gb|EES42227.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W1] Length = 296 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 147/277 (53%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ KI E+S + +IE+G G G+LT+ L A Sbjct: 13 RALLDQYGFNFKKSLGQNFLVDVNIINKIIEASQIDETTGIIEVGPGMGSLTEQLAK-HA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +KV+ E DQ+ P+L D S + N + II +D LK D K + + I ++ANLP Sbjct: 72 KKVMSFEIDQRLIPVLNDTLSPYDN-VTIINEDILKADIGKAVNTYLDDCDKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A + YG LS++ + T+ + Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNASVGTKAYGSLSIVAQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQREEPLVDIDDEEAFFKLAKAAFAQRRKTINNNYQNF 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRI 272 + N L AGI+ R E L+I+DF ++ Sbjct: 248 FKDGKQYKSSILNWLENAGIDPKRRGETLTIQDFAKL 284 >gi|113461695|ref|YP_719764.1| dimethyladenosine transferase [Haemophilus somnus 129PT] gi|170718610|ref|YP_001783811.1| dimethyladenosine transferase [Haemophilus somnus 2336] gi|123132270|sp|Q0I5C3|RSMA_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028810|sp|B0URM7|RSMA_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|112823738|gb|ABI25827.1| dimethyladenosine transferase [Haemophilus somnus 129PT] gi|168826739|gb|ACA32110.1| dimethyladenosine transferase [Haemophilus somnus 2336] Length = 281 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 148/280 (52%), Gaps = 22/280 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT L H +K GQNFL D NI++ I + ++EIG G G LT+ + Sbjct: 4 KTHLGH---TARKRFGQNFLHDNNIIQNIVMAIYPQKEQFLVEIGPGLGALTEPVAE-KV 59 Query: 71 RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NISSP---IRI 121 ++ VIE D+ L+ HP +L +I+ DA++ +FE+ + N++ +R+ Sbjct: 60 ERLTVIELDRDLAERLR----HHPFLHQKLNVIEYDAMQFNFEQLYIDENLAEKNQKLRV 115 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ + + + + QKEV +R+ A NS YGRL+++ + Sbjct: 116 FGNLPYNISTPLMFHLFK---YHAIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYF 172 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ IPH P P L L ++T +AF +RRKTLR Sbjct: 173 CQVLPVLEVPPTAFKPAPKVESAVVRLIPHKELPYPVKDLYWLNRVTTQAFNQRRKTLRN 232 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +L L L I+ RAENLSI D+ R+ N L DN Sbjct: 233 ALSTLFSAEKLTALAIDLEARAENLSIADYARLANYLADN 272 >gi|116871577|ref|YP_848358.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458009|sp|A0AEZ3|RSMA_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116740455|emb|CAK19575.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 295 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 151/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++G VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAGISKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVITQQFSKSELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E + L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|125974582|ref|YP_001038492.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405] gi|256004056|ref|ZP_05429041.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360] gi|281419107|ref|ZP_06250124.1| dimethyladenosine transferase [Clostridium thermocellum JW20] gi|125714807|gb|ABN53299.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405] gi|255991979|gb|EEU02076.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360] gi|281407256|gb|EFB37517.1| dimethyladenosine transferase [Clostridium thermocellum JW20] gi|316941700|gb|ADU75734.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313] Length = 284 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 149/277 (53%), Gaps = 16/277 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + K +GQNFL+D NI+K+I + + + VIEIG G G++T + L A Sbjct: 6 KKLIQKYNLKLTKSLGQNFLIDDNIVKRIVDVAEITEKDLVIEIGPGVGSMT-VELAKRA 64 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 KV+ +E D++ P L+D + N ++II D + V+ +F S ++++ANLPY I Sbjct: 65 GKVVAVEIDKRLIPALEDNLGEFSN-VDIINKDIMDVNINEFRGESGNVKVVANLPYYIT 123 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + + + + + QKEV +R+ A YG LSV + TK FD+ Sbjct: 124 TPIIMKLLEENNDN--IDIMVFMVQKEVAQRMVASPGKKDYGALSVAVQYYTKPEKAFDV 181 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL---KRL 244 PH F P P+V STVI + P P L + + + AFG+RRKTL +L K L Sbjct: 182 PPHCFVPQPEVDSTVIKLKVNETP-PVKLMDKDYFFTVVKAAFGQRRKTLVNALHNFKAL 240 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G + +L + GI+ N R E LSI F ++N+L Sbjct: 241 GKSKEEIKEILKKLGIDENARGETLSITQFAELSNLL 277 >gi|322377595|ref|ZP_08052085.1| dimethyladenosine transferase [Streptococcus sp. M334] gi|321281360|gb|EFX58370.1| dimethyladenosine transferase [Streptococcus sp. M334] Length = 290 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPALPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285 >gi|220935881|ref|YP_002514780.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7] gi|219997191|gb|ACL73793.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7] Length = 267 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 135/257 (52%), Gaps = 7/257 (2%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 IP+K GQ+FL + I++++ + G ++EIG G G LT LL R + V+E D Sbjct: 6 IPRKRFGQHFLHETAIIERMVAAIAPRPGEALVEIGPGLGALTAPLLER-CRVLHVVELD 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P L + Q L + Q DAL+ DF +R++ NLPYNI T L+F+ + Sbjct: 65 RDVIPPLVE-RCQGLGELRVHQADALRFDFATLAPEGGQLRVVGNLPYNISTPLIFHLLK 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P + L QKEV +R+ A N+ YGRLSV+T + +A +F + P F P P Sbjct: 124 SA---PRIRDMHFLLQKEVVDRLAAAPNTRDYGRLSVMTQYHCRAEALFRVGPGAFRPPP 180 Query: 200 KVTSTVIHFIP-HLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S + P P P E+L + +AF +RRKTLR +++ + + + AG++ Sbjct: 181 KVDSAYVRLTPWETLPHPAADEALFASLVNQAFTQRRKTLRNAVRGMADADTIEAAGLDP 240 Query: 258 NLRAENLSIEDFCRITN 274 R E LS+ F + N Sbjct: 241 AARPETLSVAQFVALAN 257 >gi|254517379|ref|ZP_05129436.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3] gi|219674217|gb|EED30586.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3] Length = 270 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 132/257 (51%), Gaps = 7/257 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ ++ + + ++EIG G G LT L+ G ++ IE D+ Sbjct: 13 RKRFGQNFLRDPGIIDRLERAIAPAESQHLVEIGPGLGALTDALVQSGC-QLDAIELDRD 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L S HPN + DAL+ DF +R++ NLPYNI T L+F + Sbjct: 72 LVTPLLAAFSIHPN-FTLHSADALRFDFGSVVRGDEQLRVVGNLPYNISTPLIFRLLEQA 130 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T + + + Q EV +R+T+Q S H+GRL ++ + + ++F++ P F P PKV Sbjct: 131 T---IIKDMHFMLQLEVVQRLTSQPGSKHWGRLGIMAQYLCRTELLFEVPPEAFDPPPKV 187 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S +I PH +P+ C L+K+ + AF +RRKTLR +LK + + GI+ Sbjct: 188 QSAIIRLTPHASPLFPDCNAAVLEKVVKAAFAQRRKTLRNNLKGMLSNEAIEGLGIDPGC 247 Query: 260 RAENLSIEDFCRITNIL 276 RAE L + F + L Sbjct: 248 RAETLELSQFVALAKAL 264 >gi|332686219|ref|YP_004455993.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311] gi|332370228|dbj|BAK21184.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311] Length = 294 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 146/285 (51%), Gaps = 20/285 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL + NILKKI ++ + VIE+G G G LT+ L A Sbjct: 14 KEILKKYDFSLKKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQLAQ-QA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +V+ E D IL D + Q N + I+ D LK D K F + PI+I+ANLP Sbjct: 73 GQVLAFEIDHNLIRILAD-TLQPYNNITIVNQDVLKTDLVKETQAVFQQAYPIKIVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L ++ +D E + ++ QKEV +RI+A+ + YG LS+ + +AT+ Sbjct: 132 YYITTPILMYFLQSDL---IVEEMVVMMQKEVADRISAKPGTKAYGSLSIAVQYFMEATI 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VI PI + + K+T+ AF RRKTL +L Sbjct: 189 AFIVPKTVFVPQPNVDSAVIKLTRRSKPIVDVINEKEFFKLTRAAFQLRRKTLWNNLLHF 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G+ L QA I + R E LS+ +F R++N L N+ Sbjct: 249 YGKEESTKQWLIKSLEQAEIVASRRGETLSLAEFARLSNSLIINR 293 >gi|229917418|ref|YP_002886064.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b] gi|229468847|gb|ACQ70619.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b] Length = 292 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 152/281 (54%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL+DLNIL KI ++ + V+EIG G G+LT+ A Sbjct: 11 KAILERHGFSFKKSLGQNFLIDLNILSKIVGAAELSEVSGVLEIGPGIGSLTEQSAK-RA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNIS-SPIRIIAN 124 +KV+ +E DQ+ PIL D S +P+ +++I DAL++D ++F N I ++AN Sbjct: 70 KKVVALEIDQRLLPILDDTMSPYPH-VKVIHGDALELDLREIVEQEFLNEGIEDISVVAN 128 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY + T ++ + + + SL ++ QKEV ERI A+ + YG LS+ + +A Sbjct: 129 LPYYVTTPIIMRLLESGVK---FRSLVMMIQKEVAERIGAKPGTKAYGSLSIAIQYYAEA 185 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242 + F + +VF P+P V S VI P + + + +F +RRKT+ +L Sbjct: 186 EVSFIVPKNVFIPAPNVDSAVITLRMRKEPAVQVKDEAFFFDVARASFAQRRKTILNNLT 245 Query: 243 RLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E LH+AGI+ R E LS+E+F R+++ + Sbjct: 246 NYIGKEHKVELERSLHEAGIDPKRRGETLSLEEFARLSDTI 286 >gi|331650945|ref|ZP_08351973.1| dimethyladenosine transferase [Escherichia coli M718] gi|331051399|gb|EGI23448.1| dimethyladenosine transferase [Escherichia coli M718] Length = 273 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT +AF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTKAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|225575697|ref|ZP_03784307.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM 10507] gi|225037077|gb|EEG47323.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM 10507] Length = 294 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 149/285 (52%), Gaps = 20/285 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + +K GQNFL+D ++L KI +S V+EIG G G +TQ L AR+ Sbjct: 15 ILKKYDFVFQKRFGQNFLIDTHVLDKIIRASDIQKSDFVLEIGPGIGTMTQYLAD-AARE 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 V+ +E D+ PILKD S + N + +I +D LKVD K N PI+++ANLPY I Sbjct: 74 VVAVEIDKSLIPILKDTLSSYSN-VTVINEDVLKVDIRKIAEERNEGKPIKVVANLPYYI 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ES+T++ QKEV +R+ + YG LS+ + + M+ + Sbjct: 133 TTPIIMGLFEKKVP---IESITIMVQKEVADRMKVGPGTKDYGALSLAVQYYAEPKMIAN 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGG 246 + + F P PKV S VI + H P P ++ + + + +F +RRKTL LK Sbjct: 190 VPSNCFMPRPKVGSAVIQLLRHEKP-PVEVDDESQMFAMIRASFNQRRKTLVNGLKNSRE 248 Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 NL L G+ N+R E L++++F ++N L ++++ Sbjct: 249 LNLQKEEIEEALTACGLSLNVRGEMLTLKEFSDLSNFLVRKRNVS 293 >gi|307705634|ref|ZP_07642485.1| dimethyladenosine transferase [Streptococcus mitis SK597] gi|307620810|gb|EFN99895.1| dimethyladenosine transferase [Streptococcus mitis SK597] Length = 290 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + KI++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDESFFFKISKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285 >gi|312109189|ref|YP_003987505.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1] gi|311214290|gb|ADP72894.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1] Length = 295 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 22/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL+KI + +G IEIG G G LT+ L A Sbjct: 14 REILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPGIGALTEQL-ARRA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E DQ+ PIL+D S + N + II D LK D + F ++ I ++ANLP Sbjct: 73 KKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEFTDAADIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ ++ D P + ++ QKEV +RI+AQ + YG LS+ + T+A Sbjct: 132 YYVTTPIIMKLLT-DNLP--IRGIVVMLQKEVADRISAQPGTKDYGSLSIAIQYYTEAEK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI I P P ++ ++ + +F +RRKT+ +L Sbjct: 189 IMTVPRTVFIPQPNVDSAVIRLIKRKQP-PVDVDDESFFFQVVRASFAQRRKTILNNLIS 247 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 ++ E +L + GI+ R E L++E+F ++N L + Sbjct: 248 NLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291 >gi|88797588|ref|ZP_01113177.1| dimethyladenosine transferase [Reinekea sp. MED297] gi|88779760|gb|EAR10946.1| dimethyladenosine transferase [Reinekea sp. MED297] Length = 262 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 6/261 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D NI+ +I S ++EIG G G +T+ LL + V+E D+ Sbjct: 5 RKRFGQNFLHDQNIIDRIVGSIMPKPDQHMVEIGPGRGAITEPLLEATDGHLDVVELDRD 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+L+ ++ L I + DAL+ DF P+R++ NLPYNI T L+F+ +S Sbjct: 65 LIPMLRAQFFRYEG-LTIHEADALQFDFGSLATDDRPLRLVGNLPYNISTPLMFHLLS-- 121 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV +R+ A YGRL ++ + +A +F + P F P+PKV Sbjct: 122 -YSDVIKDMHFMLQKEVVQRLCAAPGDNAYGRLGIMMQYHCEARYLFTVPPGAFSPAPKV 180 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ P P E K+ + +F +RRKTL+ +LK L + GI+ Sbjct: 181 ESAIVRLTPRKAPKREATNYELFAKVVKASFAQRRKTLKNNLKDLLDGDGFEALGIQPGA 240 Query: 260 RAENLSIEDFCRITNILTDNQ 280 RAE L I+DF RI N + Q Sbjct: 241 RAETLPIDDFVRIANYVDSVQ 261 >gi|125624667|ref|YP_001033150.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493475|emb|CAL98452.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071459|gb|ADJ60859.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 294 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 97/268 (36%), Positives = 144/268 (53%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D NIL KI E++ + VIEIG G G+L+Q LL A +V+ E D+ Sbjct: 27 KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLSQYLLEEAA-EVMAFEIDKS 85 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137 PIL++ + + N ++ D LKVD +KF N + PI+++ANLPY I T +L + Sbjct: 86 LIPILEETMAPYDN-FTLVSADILKVDLLSEIQKFKNPNLPIKVVANLPYYITTPILMHL 144 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + PF E ++ QKEV +RI A + YG LS+ + +A++ F + VF P Sbjct: 145 IESKI--PFSE-FVVMMQKEVADRIAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-------EN 248 +P V S ++ + P+ + K +F RRKTL +++ G E Sbjct: 202 APNVDSAILKMVRREEPLVEVEDEEWFFKTMHSSFVHRRKTLMNNMQAAFGKESKPEIEK 261 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL QA I +R E LSIE+F ++ + L Sbjct: 262 LLAQAEISPTIRGEALSIEEFAKLADAL 289 >gi|116628487|ref|YP_821106.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9] gi|122266918|sp|Q03IR2|RSMA_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116101764|gb|ABJ66910.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9] Length = 290 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI ++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL+D H N +++I +D LK D + +F N PI+++ANLP Sbjct: 69 SEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + + Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTTKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G + L A I+ ++R E LSI DF R+++ L + Sbjct: 245 FGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287 >gi|224826759|ref|ZP_03699859.1| dimethyladenosine transferase [Lutiella nitroferrum 2002] gi|224600979|gb|EEG07162.1| dimethyladenosine transferase [Lutiella nitroferrum 2002] Length = 258 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 97/269 (36%), Positives = 147/269 (54%), Gaps = 19/269 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQNFL D +++ I + G V+EIG G G LT+ LL L V+ I Sbjct: 3 KHIPRKRFGQNFLQDASVIASIVHAVNPQPGDIVVEIGPGLGALTRPLLARLPHLHVVEI 62 Query: 77 EKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 ++D I+ + S+ P RL I + DAL DF +I + ++I NLPYNI T LLF Sbjct: 63 DRD-----IISRLKSEFPPERLTIHEGDALAFDFS---SIGTRFKLIGNLPYNISTPLLF 114 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S + + + QKEV ER+ A+ ++ YGRL+V+ +R + + + P F Sbjct: 115 HLAS---YGDRVVDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFEMEQILHVPPGAF 171 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 +P PKV S V+ IP P C + + L+ + AF +RRKTLR +LK + E Sbjct: 172 WPPPKVESAVVRMIP--APGRCGVATDEAELEALVTLAFSQRRKTLRNNLKGVLDEADFA 229 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 GI++ LR ENL++E + + N+L+ + Sbjct: 230 ALGIDSGLRPENLTVEQYVAMANLLSSRR 258 >gi|114609907|ref|XP_001143221.1| PREDICTED: transcription factor B1, mitochondrial isoform 2 [Pan troglodytes] gi|114609909|ref|XP_001143300.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 3 [Pan troglodytes] Length = 346 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279 RK + L+ L E LL A I+ LR LSI F C + + D Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCEVYRKMCDE 313 >gi|91794239|ref|YP_563890.1| dimethyladenosine transferase [Shewanella denitrificans OS217] gi|123356543|sp|Q12K59|RSMA_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91716241|gb|ABE56167.1| dimethyladenosine transferase [Shewanella denitrificans OS217] Length = 267 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 150/283 (53%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D +I+ +I + + ++EIG G G +T Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAIT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + + K+ V+E D+ L++ HP ++L+I Q DAL+ DF + Sbjct: 53 EPV-AMSIDKLSVVELDRDLVERLQN----HPTLKDKLDIHQGDALQFDFSTLQQAGKKM 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V+ Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEIIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTL 237 + + + ++ PH F P+PKV S V+ +P+ N P PC + L+ + AF RRKTL Sbjct: 165 YYCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYANKPWPCKDVTVLRHLCTTAFNMRRKTL 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R +LK+L + I+ +LR E +S+E + + N+L D Q Sbjct: 225 RNNLKQLISDEEFGLLNIDASLRPEQISVEQYVALANLLCDKQ 267 >gi|330814914|ref|XP_003291474.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum] gi|325078362|gb|EGC32018.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum] Length = 489 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 146/287 (50%), Gaps = 30/287 (10%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ I+ + + K+ + QNFL+D NI KI ++SG TVIE+GAGPG LT+ LLT Sbjct: 10 TLQEIIRTFGLSAKQQLSQNFLIDKNITDKICKTSGGFKDCTVIEVGAGPGGLTRSLLTS 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------NISSP 118 A+KVI +E D +F+P LK + R+++I + L+VD K S Sbjct: 70 EAKKVIAVEMDPRFYPALKMLEDASEGRMKLIMANMLEVDEAKILFENGAEFAPWEEKSK 129 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++II NLP+N+GT L+ WI + E L + +G + Y RLSV+ Sbjct: 130 VKIIGNLPFNVGTHLMLKWIRQISP---REGLYSFGRVPIG--------TADYSRLSVMV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK------ITQEAFGK 232 + + + F P PKV + V+ P +NP+ E LK + +E F Sbjct: 179 QQSAIPRITYQLPGKAFVPPPKVDAAVVEIEPRINPL--GKEPLKNHQYFEFVCRELFAH 236 Query: 233 RRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RRKT+ +K LG G + L + I+ R +N+S++ F +TN D Sbjct: 237 RRKTVSNVIKNLGNGADALLEGIIDPKTRPQNISVDQFVDLTNRYCD 283 >gi|295425701|ref|ZP_06818388.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM 11664] gi|295064717|gb|EFG55638.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM 11664] Length = 292 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D N + I ++ +G VIEIG G G+LT+ LL GA Sbjct: 14 QAIINRYFVKAKKNLGQNFLVDQNAILGIVNAADIQEGDQVIEIGPGIGSLTEQLLLHGA 73 Query: 71 RKVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL++ I Q R ++ D L+ DF+K FF+ S PI+ Sbjct: 74 -KVFAYEVDDSLPKILQNELPAKIGDQPLDQRFHLLLKDVLQADFKKDIGAFFDFSQPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ T Sbjct: 133 VVANLPYYITTPIIFALAESDLR---FASLTLMMQKEVAERLEAKTGSKAYGPLTIATQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 R + + F P PKV S+V+ P P K+ + F +RRKTL Sbjct: 190 RMHVELALQVDHTSFMPRPKVDSSVVVLTPIEHKPDVGRRAHFNKVVKMCFAQRRKTLNN 249 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L L+ G++ +R E+L+I F +I N + Sbjct: 250 NLKNLIPDADKRAELIASLGVDPKIRPEDLTIAQFIKIANAIA 292 >gi|256848354|ref|ZP_05553797.1| dimethyladenosine transferase [Lactobacillus coleohominis 101-4-CHN] gi|256714952|gb|EEU29930.1| dimethyladenosine transferase [Lactobacillus coleohominis 101-4-CHN] Length = 298 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 150/293 (51%), Gaps = 22/293 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + I+ Y I KK GQNFL DLN+L I +++ VIEIG+G G LT+ L Sbjct: 11 SQRTREIIKKYGIHAKKGFGQNFLTDLNVLTGIVDAAQITKQDNVIEIGSGLGALTEQLA 70 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRI 121 A +V+ +E D P+L D+ S + N +++I D LK + E+F + S P+++ Sbjct: 71 K-SAGEVVALEIDTDLLPLLADVLSPYKN-VKVINQDVLKANLPKLIQEEFTDPSRPVKV 128 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I + +L N +++ W ++ ++ QKEV ER+TA+ + YG L++ + Sbjct: 129 VANLPYYITSPILMNLLNSSVQ---WAAICVMMQKEVAERLTAKVGTKQYGALTLAIEYS 185 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLR 238 A + F +S H F P+P V S ++ P L P L + + F RRK L Sbjct: 186 MTAQLAFGVSRHSFVPAPNVDSAIVVLTPRTTALTEQPFDQAKLFSLIKTCFAHRRKNLW 245 Query: 239 QSLKRLGGENLLHQAGIETNL---------RAENLSIEDFCRITNILTDNQDI 282 +LK L +N Q ++ L R E LS+ F ++ N L + Q I Sbjct: 246 NNLKPLMRKNKTKQQAVKDALDHLQIASTDRPETLSLLQFIQLANGLHEKQII 298 >gi|148985565|ref|ZP_01818754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71] gi|147922285|gb|EDK73406.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71] gi|301800746|emb|CBW33394.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141] Length = 290 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAECAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|312134313|ref|YP_004001651.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL] gi|311774364|gb|ADQ03851.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL] Length = 282 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 152/272 (55%), Gaps = 17/272 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L L Y + P K +GQNFL+D N+++KI S + +G VIEIGAGPG LT L + Sbjct: 9 ELLNFLKKYGLSPNKKLGQNFLVDENVVRKIILFSQA-EGKEVIEIGAGPGTLTVYLAEI 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 ARKV+ +E D++ +LK++ PN ++I+ +D LK++ + N + + I+ NLPY Sbjct: 68 -ARKVVAVEIDKKILNVLKEVCQDIPN-IQIVNNDFLKLNVKDLTN-TGRVYIVGNLPYY 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I +++LF + E T++ QKEV +R+ A+ + YG L+V + + F Sbjct: 125 ITSQILFKLFEEREY---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMKFYCEIEDYF 181 Query: 189 DISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR--- 243 +S +VF+P P+V S V+ F L I KI F RRKT+ +L Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKDSLPEIEH--RDFFKIVHACFSTRRKTILNALSNHFD 239 Query: 244 LGGENL---LHQAGIETNLRAENLSIEDFCRI 272 +G + L ++ A ++ NLRAE+LS++D+ R+ Sbjct: 240 IGKDKLKRIINMAEVDENLRAEDLSLDDYIRL 271 >gi|297180114|gb|ADI16337.1| dimethyladenosine transferase (rRNA methylation) [uncultured bacterium HF130_01F24] Length = 277 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 140/258 (54%), Gaps = 7/258 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +++ KI + ++EIG G G +T+ L GA K+ IE D Sbjct: 19 RKRFGQNFLHDKHVISKILGAVSPTKNDHILEIGPGFGAITKQLAQSGA-KLDCIELDAD 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK ++ + + I+Q DALK D + +R++ NLPYNI T L+F+ + + Sbjct: 78 LAASLKTEYREYKS-VNILQADALKFDLNSIATKKNSLRVVGNLPYNISTPLIFHLLKSS 136 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + +T + Q EV +R+ ++ S YGRL ++ + + +F+I+ F P PKV Sbjct: 137 Y---LIKDMTFMLQLEVIQRMVSKVGSKSYGRLGLMVQYYCEIEHLFNIASDAFVPRPKV 193 Query: 202 TSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S + PH +P E LK + Q AF +RRKT+R SL L E+LL + + L Sbjct: 194 VSALARLKPHKSPTVTAKDPECLKTVIQTAFNQRRKTIRNSLSTLVSESLLEEIPVNNKL 253 Query: 260 RAENLSIEDFCRITNILT 277 R ENL+++D+ RI++ ++ Sbjct: 254 RPENLTLQDYVRISDAIS 271 >gi|299820686|ref|ZP_07052575.1| dimethyladenosine transferase [Listeria grayi DSM 20601] gi|299817707|gb|EFI84942.1| dimethyladenosine transferase [Listeria grayi DSM 20601] Length = 295 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 29/284 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NILK+IAE++G +EIG G G LT+ L A++ Sbjct: 14 ILKKYHFLFKKSLGQNFLIDSNILKRIAETAGLNAESNAMEIGPGIGALTEH-LARNAKE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S +PN ++II D LK D E F + +P++++ANLPY Sbjct: 73 VVAFEIDQRLIPILDDTLSPYPN-VKIIHQDVLKADVRAALTENFSDPEAPLKVVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL I D S+T + QKEV +RI+A + YG LS+ + + Sbjct: 132 YVTTPIILKLLHEGIPVD-------SMTFMLQKEVADRISAVPGTKSYGSLSIAIQYYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241 A + F + VF P P V S +IH P+ ++T+ AF +RRKTL +L Sbjct: 185 AELAFIVPKTVFMPQPNVDSAIIHLKRREKPLAHVENETFFFEVTRAAFAQRRKTLWNNL 244 Query: 242 ---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + E L G++ R E +SI +F +++ L Sbjct: 245 VSKFPELKENKEELETELTARGLDLKRRGETMSIPEFAVLSDFL 288 >gi|15672672|ref|NP_266846.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis Il1403] gi|281491189|ref|YP_003353169.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis KF147] gi|27151600|sp|Q9CHN8|RSMA_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|12723599|gb|AAK04788.1|AE006302_6 kasugamycin dimethyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|281374930|gb|ADA64448.1| Dimethyladenosine transferase [Lactococcus lactis subsp. lactis KF147] gi|326406235|gb|ADZ63306.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis CV56] Length = 294 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 98/268 (36%), Positives = 144/268 (53%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D NIL KI +++ + VIEIG G G+LTQ LL A +V+ E D+ Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAA-EVMAFEIDKS 85 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137 PIL++ + + N ++ D LKVD +KF N + PI+++ANLPY I T +L + Sbjct: 86 LIPILEETMAPYDN-FTLVSADILKVDLLSEIQKFKNPNLPIKVVANLPYYITTPILMHL 144 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + PF E ++ QKEV +RI A + YG LS+ + +A++ F + VF P Sbjct: 145 IESKI--PFSE-FVVMMQKEVADRIAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-------EN 248 +P V S ++ + P+ + K +F RRKTL +L+ G E Sbjct: 202 APNVDSAILKMVRREAPLVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIEK 261 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL QA I +R E LSIE+F ++ + L Sbjct: 262 LLAQAEISPTIRGEALSIEEFAKLADAL 289 >gi|213962508|ref|ZP_03390770.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno] gi|213954834|gb|EEB66154.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno] Length = 257 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 106/262 (40%), Positives = 146/262 (55%), Gaps = 14/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL DLNI +KIA++ SL G VIEIGAG G LTQ LL V ++E D+ Sbjct: 7 KKHLGQHFLKDLNIAQKIADTL-SLKGYNKVIEIGAGMGVLTQFLLKKDV-DVHIVEIDK 64 Query: 81 QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L+ + +P + +II DD LK + + I P II N PYNI T+++F + Sbjct: 65 ESVAYLE---THYPELKGKIIADDFLKYNIADY--IGEPFAIIGNFPYNISTQIVFKLLE 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P + +FQKEV ERI + S YG LSVL A+ +F +S VF P P Sbjct: 120 LREYVP---EFSGMFQKEVAERICEHEGSKTYGILSVLVQAFYDASYLFTVSEGVFNPPP 176 Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S VI + N C ESL + + AF +RRKTLR SLK+ + L Q I + Sbjct: 177 KVKSGVIRLVRKTNFHLDCDESLFFTVVKTAFNQRRKTLRNSLKQFLIDENLKQDSI-FD 235 Query: 259 LRAENLSIEDFCRITNILTDNQ 280 R E L +DF RIT ++++ Sbjct: 236 KRPEQLPWQDFVRITKVISEQH 257 >gi|116333120|ref|YP_794647.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367] gi|122270191|sp|Q03T56|RSMA_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116098467|gb|ABJ63616.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367] Length = 296 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 145/279 (51%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ Y+++ KK +GQNFL DLNIL+ I + D VIEIG G G LT+ + A Sbjct: 15 KAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAK-RA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 KV+ E D+ P+L + + N ++II +D LK + F P++++ANLP Sbjct: 74 HKVVAFEIDENLLPVLDETLMDYKN-VKIINEDILKANLPAVVADEFEADRPLKLVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + + +E++ ++ Q EV ER+ A+ + YG LSV+ +R + Sbjct: 133 YYITTPILMGVLQSTVR---FEAIVVMMQAEVAERLVAEPGTKAYGSLSVIMQYRAHVEI 189 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F++ F P P V S +I P L P ++L + F RRK+L +L+ + Sbjct: 190 AFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYEDKALFSFVKGCFAHRRKSLWNNLQGI 249 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E +L+Q GI LR E L++ +F +TN Sbjct: 250 FGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTN 288 >gi|313902246|ref|ZP_07835652.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM 13965] gi|313467476|gb|EFR62984.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM 13965] Length = 320 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 19/280 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ L Y + P + +GQNFL+D N ++I + VIE+G G G LT+ L Sbjct: 25 LRRWLERYGVRPSRRLGQNFLVDDNWAERIVAAVEPGPDDLVIEVGPGLGALTERLAQRA 84 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANL 125 R V +E D++ L++ PN LE+++ D L VD ++ + P+++ +NL Sbjct: 85 GR-VRAVEVDRRLAAALRERLGHLPN-LELVEGDILAVDLDRLASRQDPAGGPVKLASNL 142 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + L W+ A P WE L Q EV +R+ A S YG L+V + + Sbjct: 143 PYAITSPFLVRWLEA---PIRWERAVLTLQAEVVDRLVAAPGSAAYGALTVFVAYHARVE 199 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL- 241 + + F+P P+V S V+ PHL P P + E+L + + AF +RRK L +L Sbjct: 200 RLGTVPAGAFWPRPEVDSAVVRLWPHLRP-PVAVADPEALFALVRAAFSQRRKRLANALA 258 Query: 242 -----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +R+ E AGI+ R EN+ +E F R+ N L Sbjct: 259 AHPAVERVQAEAACRAAGIDPGARPENVDLEGFARLANQL 298 >gi|296199503|ref|XP_002747175.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Callithrix jacchus] Length = 343 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 146/290 (50%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 SIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F ++ P + Sbjct: 77 SVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFPESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWISADTW--PPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ + + PF +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLESMSCRDGPFVYGRTQMTLTFQKEVAERLAATTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P ++P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIHPKIQQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L E LL A ++ LR LSI F + ++ Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLELADVDPTLRPRQLSIPQFKSLCDV 306 >gi|306830179|ref|ZP_07463363.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249] gi|304427705|gb|EFM30801.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249] Length = 290 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLIKALDQAGLSPSVRGEALSLAEFASLADAL 285 >gi|158321677|ref|YP_001514184.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs] gi|166987688|sp|A8MK56|RSMA_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158141876|gb|ABW20188.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs] Length = 287 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 152/280 (54%), Gaps = 19/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ Y+ K +GQNFL+D NIL I + + +G +IE+G G G+LTQ + A Sbjct: 11 KEIVQKYEFKFSKSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAE-RA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPY 127 V+ +E D+ PILK+ +PN +E+I +D LK+D K P +++IANLPY Sbjct: 70 DSVLAVEIDKTLIPILKETLGAYPN-VEVINEDVLKLDLHKLIEEKFPGRNVKVIANLPY 128 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + T ++ ++ + P +SLT++ QKEV +R+ A + YG LS+ + + ++ Sbjct: 129 YVTTPIIMKFLE-EKVP--VKSLTIMIQKEVADRMQAGPGTKDYGALSIAVQYYSNPKIL 185 Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL---- 241 + P VF P PKV STVI I + E L + ++AFGKRRKTL +L Sbjct: 186 LKVPPSVFIPQPKVESTVIRLDILDTPKVSVEREDLFFSLVKDAFGKRRKTLLNALSTGD 245 Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K L E +L + I+ N R E L+IE++ + N L Sbjct: 246 LKLEKSLLRE-VLAASNIDENRRGETLTIEEYGVLANNLA 284 >gi|254283714|ref|ZP_04958682.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B] gi|219679917|gb|EED36266.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B] Length = 265 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 7/258 (2%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL D +++ IA++ G ++EIG G G LTQ L++ IE D+ Sbjct: 13 PRKRFGQNFLRDQSVIDAIAQAINPQPGDHLVEIGPGEGALTQALISTEC-AYDAIELDR 71 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +L S + N + DAL DF + +R++ NLPYNI T L+F + Sbjct: 72 DLTAVLLASFSIYSN-FALHSADALNFDFSQLRVSEEKLRVVGNLPYNISTPLIFKLLEN 130 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + Q EV +R++A S H+GR+ V+ + + T + D+ P F+P+PK Sbjct: 131 ID---IIRDMHFMLQLEVVQRLSAAPGSKHWGRVGVMAQYLCQVTHLIDVPPESFYPAPK 187 Query: 201 VTSTVIHFIP-HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ P H +P C +L+ +T+ AF +RRKTLR + K + ++ L GI+ N Sbjct: 188 VQSAVVSLRPHHSSPYKACDPVALRTVTRHAFAQRRKTLRNNFKGIIDDSALEALGIDPN 247 Query: 259 LRAENLSIEDFCRITNIL 276 RAE+L++ DF + +++ Sbjct: 248 ARAESLALADFVSLASLM 265 >gi|168494774|ref|ZP_02718917.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06] gi|225855474|ref|YP_002736986.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA] gi|254807889|sp|C1CGR5|RSMA_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|183575340|gb|EDT95868.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06] gi|225722617|gb|ACO18470.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA] Length = 290 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLMPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|119944805|ref|YP_942485.1| dimethyladenosine transferase [Psychromonas ingrahamii 37] gi|166221692|sp|A1STS1|RSMA_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119863409|gb|ABM02886.1| dimethyladenosine transferase [Psychromonas ingrahamii 37] Length = 270 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 148/282 (52%), Gaps = 23/282 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K+H L H +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNDKTH-----LGH---TARKRFGQNFLHDDYIIDSIVGAIAPQWEDNIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + + + + VIE D+ L ++HP ++L I Q DAL+ DF K + P+ Sbjct: 53 EPVAS-KVKCLNVIELDRDLAARL----AEHPVLGDKLNITQADALQFDFGKLASTERPL 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ + + + QKEV R+ A N YGRL+V+ Sbjct: 108 RVFGNLPYNISTPLMFHLFE---YADKISDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ---EAFGKRRKT 236 + + + ++ P F P+PKV S V+ P+ P P +SLK +TQ AF +RRKT Sbjct: 165 YYCRIIPVLEVPPTAFKPAPKVDSAVVRLEPYDTP-PFIAKSLKCLTQVCSMAFNQRRKT 223 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +R L+ L L + GI+T RAEN+S+E++ I N + D Sbjct: 224 IRNGLRDLLSIEQLQEIGIDTTKRAENISVEEYVNIANYVFD 265 >gi|304438548|ref|ZP_07398487.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368386|gb|EFM22072.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 292 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 148/273 (54%), Gaps = 14/273 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ILS + + K++GQNFL+D +++ I +++ TV+EIG G G LTQ L GA Sbjct: 15 RHILSAFHLRASKWLGQNFLVDAGVVRAIVDAADLSRSDTVLEIGPGIGTLTQGLAESGA 74 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYN 128 R ++ +E D++ +L + + N + ++ D LK+D + N+ + R ++ANLPY Sbjct: 75 R-IVAVELDKKLPAVLAETLKGYDN-VTVVPGDILKLDILRILNLGAGERFKVVANLPYY 132 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + + P E + + QKEV R+TA+ S YG LS+ + T A ++ Sbjct: 133 ITTPILMALL--EQHLPI-ERMVTMVQKEVAVRMTARPGSKDYGALSIAVQYYTDAHIVM 189 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG- 245 D+ P F P+P+VTS VI P C + ++ + AFG+RRKTL +L G Sbjct: 190 DVPPRAFMPAPEVTSAVIACRMRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAGL 249 Query: 246 ----GENLLHQAGIETNLRAENLSIEDFCRITN 274 L AGI +LR E LS+ DF R+++ Sbjct: 250 TKELCRAGLAAAGIAESLRGEQLSLADFARLSD 282 >gi|291397177|ref|XP_002714996.1| PREDICTED: Dimethyladenosine transferase 1, mitochondrial-like [Oryctolagus cuniculus] Length = 364 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F S P + Sbjct: 77 NVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKLEKAFPESLKRHWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W +S P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIVKWLEHVSCRDGPFVYGRTPMTLTFQKEVAERLAATTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + +F I F P P+V V+ F P + P I + ++K+ Q AF R Sbjct: 197 SIMAQYLCHVEHVFTIPGRAFVPKPEVDVGVVRFTPLIQPRIEQPFKLVEKVVQNAFQFR 256 Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279 RK + L L E LLH A +E LR LSI F C I + D Sbjct: 257 RKYCYRGLGMLFPEAQRLESTERLLHLADVEPTLRPRQLSIAHFRSLCDIYRRMCDG 313 >gi|109072294|ref|XP_001094657.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 2 [Macaca mulatta] Length = 345 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279 RK + L L E LL A I+ LR LSI F C + + D Sbjct: 257 RKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFRSLCEVYRRMCDE 313 >gi|122136705|sp|Q2PG46|TFB1M_MACFA RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|84578981|dbj|BAE72924.1| hypothetical protein [Macaca fascicularis] Length = 345 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279 RK + L L E LL A I+ LR LSI F C + + D Sbjct: 257 RKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCDE 313 >gi|312128457|ref|YP_003993331.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis 108] gi|311778476|gb|ADQ07962.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis 108] Length = 282 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 155/270 (57%), Gaps = 13/270 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L ++L Y + P K +GQNFL+D N+++KI S + +G VIEIGAGPG LT + L Sbjct: 9 ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQT-EGKEVIEIGAGPGTLT-VYLAK 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV+ +E D++ +LKD+ Q+ + ++I+ D L+++ + N ++ + ++ NLPY Sbjct: 67 TAQKVVAVEIDKKILNVLKDVC-QNLSNVQIVNSDFLELNVKNLTN-NNKVYVVGNLPYY 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + +++LF + E T++ QKEV +R+ A+ + YG L+V + + F Sbjct: 125 VTSQILFKLFKERKY---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245 +S +VF+P P+V S V+ + + KI F RRKT+ +L + Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKKFFKIVHACFSTRRKTILNALSNQLDIA 241 Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272 ++L +H AG++ NLRAE+LS++++ R+ Sbjct: 242 KDDLKMIIHMAGLDENLRAEDLSLDNYIRL 271 >gi|307709722|ref|ZP_07646173.1| dimethyladenosine transferase [Streptococcus mitis SK564] gi|307619424|gb|EFN98549.1| dimethyladenosine transferase [Streptococcus mitis SK564] Length = 290 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVVVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285 >gi|225859740|ref|YP_002741250.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585] gi|254807886|sp|C1CA29|RSMA_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225720605|gb|ACO16459.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585] Length = 290 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|86516029|gb|ABC97665.1| KsgA [Shigella boydii] Length = 256 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 138/262 (52%), Gaps = 18/262 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ +G R +++VIE D+ Sbjct: 3 GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLMVIELDRDLA 59 Query: 84 PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P P Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +RAEN+S+ +C++ N L +N Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254 >gi|119899174|ref|YP_934387.1| dimethyladenosine transferase [Azoarcus sp. BH72] gi|119671587|emb|CAL95500.1| dimethyladenosine transferase [Azoarcus sp. BH72] Length = 265 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 144/257 (56%), Gaps = 15/257 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL D NI+++I ++ +G ++EIG G G +T L+ LG V+ I++D Sbjct: 12 RKRFGQNFLSDPNIIRRIIDAIRPKEGDIMVEIGPGLGAMTTPLIERLGHLNVVEIDRDL 71 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 I + + P +L I + DALK DF ++ SP+R++ NLPYNI T +LF+ Sbjct: 72 ----IARLRETWTPEQLTIHEGDALKFDFG---SLGSPLRVVGNLPYNISTPILFHL--- 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 T+ + +T + QKEV R+ A+ + YGRLSV+ +R + +FD+ P F P+PK Sbjct: 122 STFADRVKDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMARVFDVPPGAFRPAPK 181 Query: 201 VTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V S+++ P L P L +I AFG+RRKTLR +LK GE G++ Sbjct: 182 VMSSIVRMAP-LPPEELGARDEALLGQIVTAAFGQRRKTLRNTLKDFLGEADFAALGLDP 240 Query: 258 NLRAENLSIEDFCRITN 274 LR E LS+ +F I N Sbjct: 241 GLRGERLSVAEFVAIAN 257 >gi|116283278|gb|AAH05183.1| TFB1M protein [Homo sapiens] Length = 341 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L+ L E LL A I+ LR LSI F + ++ Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306 >gi|329574115|gb|EGG55692.1| dimethyladenosine transferase [Enterococcus faecalis TX1467] Length = 295 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 152/289 (52%), Gaps = 24/289 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQAFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T ++ +++ S D + ++ QKEV +RI A+ + YG LS+ + +A Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S +I P + K+T+ +F RRKTL +L Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G++ L +A I+++ R E LS+E+F R++N L N+ + Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDSSRRGETLSLEEFARLSNALEKNKPV 295 >gi|111658871|ref|ZP_01409492.1| hypothetical protein SpneT_02000042 [Streptococcus pneumoniae TIGR4] gi|148993153|ref|ZP_01822719.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68] gi|149021935|ref|ZP_01835922.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72] gi|168489990|ref|ZP_02714189.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195] gi|221232709|ref|YP_002511863.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC 700669] gi|225861802|ref|YP_002743311.1| dimethyladenosine transferase [Streptococcus pneumoniae Taiwan19F-14] gi|298230181|ref|ZP_06963862.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255257|ref|ZP_06978843.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503755|ref|YP_003725695.1| dimethyladenosine transferase [Streptococcus pneumoniae TCH8431/19A] gi|27151593|sp|Q97NN5|RSMA_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807887|sp|B8ZNY9|RSMA_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807891|sp|C1CTN9|RSMA_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147928127|gb|EDK79145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68] gi|147929973|gb|EDK80961.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72] gi|183571617|gb|EDT92145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195] gi|220675171|emb|CAR69755.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC 700669] gi|225727338|gb|ACO23189.1| dimethyladenosine transferase [Streptococcus pneumoniae Taiwan19F-14] gi|298239350|gb|ADI70481.1| dimethyladenosine transferase [Streptococcus pneumoniae TCH8431/19A] gi|327389149|gb|EGE87495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375] gi|332072066|gb|EGI82553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570] Length = 290 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|156415992|ref|NP_057104.2| dimethyladenosine transferase 1, mitochondrial [Homo sapiens] gi|74751555|sp|Q8WVM0|TFB1M_HUMAN RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=h-mtTFB; Short=h-mtTFB1; Short=hTFB1M; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|17389500|gb|AAH17788.1| Transcription factor B1, mitochondrial [Homo sapiens] gi|56204607|emb|CAI20506.1| transcription factor B1, mitochondrial [Homo sapiens] gi|119568075|gb|EAW47690.1| transcription factor B1, mitochondrial [Homo sapiens] gi|123982134|gb|ABM82896.1| transcription factor B1, mitochondrial [synthetic construct] gi|123996967|gb|ABM86085.1| transcription factor B1, mitochondrial [synthetic construct] gi|208967957|dbj|BAG73817.1| mitochondrial transcription factor B1 [synthetic construct] gi|311350098|gb|ADP92254.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350100|gb|ADP92255.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350102|gb|ADP92256.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350104|gb|ADP92257.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350106|gb|ADP92258.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350108|gb|ADP92259.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350110|gb|ADP92260.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350112|gb|ADP92261.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350114|gb|ADP92262.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350116|gb|ADP92263.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350118|gb|ADP92264.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350120|gb|ADP92265.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350122|gb|ADP92266.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350124|gb|ADP92267.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350126|gb|ADP92268.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350128|gb|ADP92269.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350130|gb|ADP92270.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350132|gb|ADP92271.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350134|gb|ADP92272.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350136|gb|ADP92273.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350138|gb|ADP92274.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350140|gb|ADP92275.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350142|gb|ADP92276.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350144|gb|ADP92277.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350146|gb|ADP92278.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350148|gb|ADP92279.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350150|gb|ADP92280.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350152|gb|ADP92281.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350154|gb|ADP92282.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350156|gb|ADP92283.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350158|gb|ADP92284.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350160|gb|ADP92285.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350162|gb|ADP92286.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350164|gb|ADP92287.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350166|gb|ADP92288.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350168|gb|ADP92289.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350170|gb|ADP92290.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350172|gb|ADP92291.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350174|gb|ADP92292.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350176|gb|ADP92293.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] Length = 346 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L+ L E LL A I+ LR LSI F + ++ Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306 >gi|120599973|ref|YP_964547.1| dimethyladenosine transferase [Shewanella sp. W3-18-1] gi|146292093|ref|YP_001182517.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32] gi|166221703|sp|A4Y435|RSMA_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221705|sp|A1RMU8|RSMA_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120560066|gb|ABM25993.1| dimethyladenosine transferase [Shewanella sp. W3-18-1] gi|145563783|gb|ABP74718.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32] gi|319425389|gb|ADV53463.1| dimethyladenosine transferase [Shewanella putrefaciens 200] Length = 268 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 27/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH-----LGHTA---RKRFGQNFLTDGNVINRIVGAIAPDNNHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 + + + + V+E D+ P+LKD +L I Q DAL+ DF + Sbjct: 53 EPV-AMAVDNLTVVELDRDLVERLHKHPVLKD-------KLTIHQGDALQFDFSQLVVPG 104 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V Sbjct: 105 KKLKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ PH F P+PKV S V+ +P+ P PC + L+++ AF RR Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRR 221 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR +LK + + Q GI+ + R E +S+E + + N++ D + Sbjct: 222 KTLRNNLKHMLSDAEFEQLGIDQSQRPEQISVEQYVAMANMICDRK 267 >gi|15903841|ref|NP_359391.1| dimethyladenosine transferase [Streptococcus pneumoniae R6] gi|116515767|ref|YP_817204.1| dimethyladenosine transferase [Streptococcus pneumoniae D39] gi|168492040|ref|ZP_02716183.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04] gi|33516933|sp|Q8DND3|RSMA_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122277950|sp|Q04II4|RSMA_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15459484|gb|AAL00602.1| Dimethyladenosine transferase [Streptococcus pneumoniae R6] gi|116076343|gb|ABJ54063.1| dimethyladenosine transferase [Streptococcus pneumoniae D39] gi|183573705|gb|EDT94233.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04] Length = 290 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|312970146|ref|ZP_07784328.1| dimethyladenosine transferase [Escherichia coli 1827-70] gi|310337644|gb|EFQ02755.1| dimethyladenosine transferase [Escherichia coli 1827-70] Length = 273 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKDQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|304438967|ref|ZP_07398890.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372633|gb|EFM26216.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 284 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 148/274 (54%), Gaps = 15/274 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K L IL + K +GQNFL+D NI+++IA+ +G +G V+EIG G G LT+ L Sbjct: 6 KPSVLVQILEEFGFRFTKSLGQNFLIDGNIVRRIADGAGVEEGSNVLEIGPGVGTLTEEL 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIAN 124 L GA V+ +E D+ I K + + +R++II DD L++D E+ + + PI+++AN Sbjct: 66 LLRGA-NVLAVEIDKNLVDIHK--KTLNYDRVKIIYDDFLRLDTEEIKSYLKGPIKVVAN 122 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY + T ++ + +D ES+T++ QKEV R A+ + YG LSV + + Sbjct: 123 LPYYVTTPIITKILESDLE---VESITVMVQKEVANRFAAEAGTKDYGSLSVFINYYAEP 179 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 +F + VF P P V S V+ + + L ++ + AF KRRKT+ +L Sbjct: 180 KYLFSVPKSVFMPKPNVDSAVVKLEIKKHREDIDKDKLFRVVRGAFSKRRKTILNALSTY 239 Query: 245 GGENL--------LHQAGIETNLRAENLSIEDFC 270 G +N+ L +GI+ N R E LS E+F Sbjct: 240 GFKNITKTEIAEALKISGIDANRRGETLSPEEFM 273 >gi|152978411|ref|YP_001344040.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z] gi|150840134|gb|ABR74105.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z] Length = 288 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 148/272 (54%), Gaps = 25/272 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D N+++ I + G ++EIG G G LT+ + R + V+E D+ Sbjct: 13 RKRFGQNFLHDDNVIQSIVAAIYPQKGQFLVEIGPGLGALTEPVADRLER-LTVVELDRD 71 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NISS---PIRIIANLPYNIGTR 132 L+ HP +L +I+ DA++ DF K + N++ +R+ NLPYNI T Sbjct: 72 LAERLR----HHPFLHQKLNVIEADAMQFDFGKLYADANLAEQGQKLRVFGNLPYNISTP 127 Query: 133 LLFNWISADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 L+F+ + F+ + + + QKEV +R+ A NS YGRL+++T + + + + Sbjct: 128 LIFHLLK------FYDKIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMTQYFCQVMPVLE 181 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ IPH P P L L ++T +AF +RRKTLR +L L Sbjct: 182 VPPTAFKPAPKVDSAVVRLIPHKTLPHPAKDLYWLNRVTSQAFNQRRKTLRNALSTLFSP 241 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L G++ RAENL+I D+ R+ + L DN Sbjct: 242 ENLTALGVDLTARAENLTIADYVRLADWLYDN 273 >gi|182684919|ref|YP_001836666.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14] gi|303254092|ref|ZP_07340207.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455] gi|303260358|ref|ZP_07346328.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293] gi|303262506|ref|ZP_07348448.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292] gi|303265137|ref|ZP_07351050.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397] gi|303266001|ref|ZP_07351896.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457] gi|303268067|ref|ZP_07353868.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458] gi|226732631|sp|B2IM67|RSMA_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|182630253|gb|ACB91201.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14] gi|301802662|emb|CBW35428.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200] gi|302598925|gb|EFL65956.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455] gi|302636406|gb|EFL66899.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292] gi|302638524|gb|EFL68989.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293] gi|302642427|gb|EFL72773.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458] gi|302644442|gb|EFL74694.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457] gi|302645354|gb|EFL75588.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397] Length = 290 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -QVMTFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|251778936|ref|ZP_04821856.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083251|gb|EES49141.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 283 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/275 (35%), Positives = 144/275 (52%), Gaps = 12/275 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y K +GQNFLLD ++L I + + + +IEIG G G LT LL A Sbjct: 9 KELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQ-KA 67 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL+ ++ ++ E+I +DALKVDF + ++++ANLPY + Sbjct: 68 KRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYVT 126 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + + +ESLT++ QKEV ERI A+ N YG LSVL + ++ + Sbjct: 127 TPIIVKLLKENHK---FESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRKV 183 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG--G 246 SP F P PKV S VI NP + L I + F RRKTL + K +G Sbjct: 184 SPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLSK 243 Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 E+L I+ RAE LSIE+F + + + D Sbjct: 244 EDLQKAFDYCNIDPKRRAETLSIEEFAVLADSIHD 278 >gi|54307616|ref|YP_128636.1| dimethyladenosine transferase [Photobacterium profundum SS9] gi|46912039|emb|CAG18834.1| putative dimethyladenosine transferase [Photobacterium profundum SS9] Length = 286 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 13/267 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G LT+ + L K VIE D+ Sbjct: 28 RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSVIELDRD 86 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP+ +L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 87 LAKRLR----HHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLF 142 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T+ E + + QKEV R+ A YGRL+V+ + ++ T + ++ P F P+ Sbjct: 143 ---TFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESFTPA 199 Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P PC L+ L ++ +E F +RRKT+R K L L G+ Sbjct: 200 PKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDLGVN 259 Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283 LR EN++++ F ++ N L N A Sbjct: 260 PGLRPENITLQQFVKMANWLDANHQNA 286 >gi|29375520|ref|NP_814674.1| dimethyladenosine transferase [Enterococcus faecalis V583] gi|227517856|ref|ZP_03947905.1| dimethyladenosine transferase [Enterococcus faecalis TX0104] gi|227555047|ref|ZP_03985094.1| dimethyladenosine transferase [Enterococcus faecalis HH22] gi|255974004|ref|ZP_05424590.1| dimethyladenosine transferase [Enterococcus faecalis T2] gi|256617805|ref|ZP_05474651.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200] gi|256761690|ref|ZP_05502270.1| dimethyladenosine transferase [Enterococcus faecalis T3] gi|256957208|ref|ZP_05561379.1| dimethyladenosine transferase [Enterococcus faecalis DS5] gi|257077820|ref|ZP_05572181.1| dimethyladenosine transferase [Enterococcus faecalis JH1] gi|257083847|ref|ZP_05578208.1| dimethyladenosine transferase [Enterococcus faecalis Fly1] gi|257086272|ref|ZP_05580633.1| dimethyladenosine transferase [Enterococcus faecalis D6] gi|257089346|ref|ZP_05583707.1| dimethyladenosine transferase [Enterococcus faecalis CH188] gi|257415498|ref|ZP_05592492.1| dimethyladenosine transferase [Enterococcus faecalis AR01/DG] gi|257418530|ref|ZP_05595524.1| dimethyladenosine transferase [Enterococcus faecalis T11] gi|293383814|ref|ZP_06629721.1| dimethyladenosine transferase [Enterococcus faecalis R712] gi|293388710|ref|ZP_06633203.1| dimethyladenosine transferase [Enterococcus faecalis S613] gi|294780523|ref|ZP_06745886.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1] gi|300859868|ref|ZP_07105956.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11] gi|307268011|ref|ZP_07549399.1| dimethyladenosine transferase [Enterococcus faecalis TX4248] gi|307275353|ref|ZP_07556496.1| dimethyladenosine transferase [Enterococcus faecalis TX2134] gi|307278369|ref|ZP_07559444.1| dimethyladenosine transferase [Enterococcus faecalis TX0860] gi|307286744|ref|ZP_07566830.1| dimethyladenosine transferase [Enterococcus faecalis TX0109] gi|312901521|ref|ZP_07760795.1| dimethyladenosine transferase [Enterococcus faecalis TX0470] gi|312904496|ref|ZP_07763655.1| dimethyladenosine transferase [Enterococcus faecalis TX0635] gi|312906970|ref|ZP_07765966.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512] gi|312978773|ref|ZP_07790500.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516] gi|33516925|sp|Q837A7|RSMA_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29342980|gb|AAO80744.1| dimethyladenosine transferase [Enterococcus faecalis V583] gi|227074699|gb|EEI12662.1| dimethyladenosine transferase [Enterococcus faecalis TX0104] gi|227175834|gb|EEI56806.1| dimethyladenosine transferase [Enterococcus faecalis HH22] gi|255966876|gb|EET97498.1| dimethyladenosine transferase [Enterococcus faecalis T2] gi|256597332|gb|EEU16508.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200] gi|256682941|gb|EEU22636.1| dimethyladenosine transferase [Enterococcus faecalis T3] gi|256947704|gb|EEU64336.1| dimethyladenosine transferase [Enterococcus faecalis DS5] gi|256985850|gb|EEU73152.1| dimethyladenosine transferase [Enterococcus faecalis JH1] gi|256991877|gb|EEU79179.1| dimethyladenosine transferase [Enterococcus faecalis Fly1] gi|256994302|gb|EEU81604.1| dimethyladenosine transferase [Enterococcus faecalis D6] gi|256998158|gb|EEU84678.1| dimethyladenosine transferase [Enterococcus faecalis CH188] gi|257157326|gb|EEU87286.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG] gi|257160358|gb|EEU90318.1| dimethyladenosine transferase [Enterococcus faecalis T11] gi|291078890|gb|EFE16254.1| dimethyladenosine transferase [Enterococcus faecalis R712] gi|291081867|gb|EFE18830.1| dimethyladenosine transferase [Enterococcus faecalis S613] gi|294452350|gb|EFG20789.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1] gi|300850686|gb|EFK78435.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11] gi|306502222|gb|EFM71506.1| dimethyladenosine transferase [Enterococcus faecalis TX0109] gi|306504875|gb|EFM74070.1| dimethyladenosine transferase [Enterococcus faecalis TX0860] gi|306507987|gb|EFM77114.1| dimethyladenosine transferase [Enterococcus faecalis TX2134] gi|306515652|gb|EFM84179.1| dimethyladenosine transferase [Enterococcus faecalis TX4248] gi|310626955|gb|EFQ10238.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512] gi|310632194|gb|EFQ15477.1| dimethyladenosine transferase [Enterococcus faecalis TX0635] gi|311288480|gb|EFQ67036.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516] gi|311291421|gb|EFQ69977.1| dimethyladenosine transferase [Enterococcus faecalis TX0470] gi|315027121|gb|EFT39053.1| dimethyladenosine transferase [Enterococcus faecalis TX2137] gi|315032435|gb|EFT44367.1| dimethyladenosine transferase [Enterococcus faecalis TX0017] gi|315034331|gb|EFT46263.1| dimethyladenosine transferase [Enterococcus faecalis TX0027] gi|315145777|gb|EFT89793.1| dimethyladenosine transferase [Enterococcus faecalis TX2141] gi|315148093|gb|EFT92109.1| dimethyladenosine transferase [Enterococcus faecalis TX4244] gi|315149696|gb|EFT93712.1| dimethyladenosine transferase [Enterococcus faecalis TX0012] gi|315165204|gb|EFU09221.1| dimethyladenosine transferase [Enterococcus faecalis TX1302] gi|315167928|gb|EFU11945.1| dimethyladenosine transferase [Enterococcus faecalis TX1341] gi|315172038|gb|EFU16055.1| dimethyladenosine transferase [Enterococcus faecalis TX1342] gi|315173444|gb|EFU17461.1| dimethyladenosine transferase [Enterococcus faecalis TX1346] gi|315574151|gb|EFU86342.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B] gi|315577282|gb|EFU89473.1| dimethyladenosine transferase [Enterococcus faecalis TX0630] gi|315581706|gb|EFU93897.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A] gi|327534516|gb|AEA93350.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF] Length = 295 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T ++ +++ S D + ++ QKEV +RI A+ + YG LS+ + +A Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S +I P + K+T+ +F RRKTL +L Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|149012426|ref|ZP_01833457.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75] gi|147763482|gb|EDK70418.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75] Length = 290 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFACLADAL 285 >gi|169834364|ref|YP_001695338.1| dimethyladenosine transferase [Streptococcus pneumoniae Hungary19A-6] gi|194397125|ref|YP_002038567.1| dimethyladenosine transferase [Streptococcus pneumoniae G54] gi|237651002|ref|ZP_04525254.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974] gi|237822560|ref|ZP_04598405.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974M2] gi|226732629|sp|B5E2H6|RSMA_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732630|sp|B1I8T7|RSMA_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|168996866|gb|ACA37478.1| dimethyladenosine transferase [Streptococcus pneumoniae Hungary19A-6] gi|194356792|gb|ACF55240.1| dimethyladenosine transferase [Streptococcus pneumoniae G54] Length = 290 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|227532998|ref|ZP_03963047.1| dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189399|gb|EEI69466.1| dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 302 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 141/277 (50%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A + Sbjct: 20 ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 78 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128 V+ +E D + PIL + + +PN + ++ +D LK D + F+ ++++ANLPY Sbjct: 79 VVALEIDDRLLPILDETLADYPNAM-VVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 137 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + + A P S+T++ QKEV ER++A S YG LS+ F Sbjct: 138 ITTPILLHLLRAQ-LP--LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATAF 194 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246 +S H F P+P V S ++ P+ + S ++ + AF RRKTL +L L G Sbjct: 195 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 254 Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + L A I+ RAE LSI DF R+ L Sbjct: 255 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 291 >gi|224048037|ref|XP_002196390.1| PREDICTED: similar to Tfb1m protein [Taeniopygia guttata] Length = 351 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 144/289 (49%), Gaps = 23/289 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ +++ K + QNFLLDL + KI + +G L V E+G GPG +T+ +L+ Sbjct: 17 TIGEIIKLFRLKALKQLSQNFLLDLRLTDKIVKQAGELKNAHVCEVGPGPGGITRSILSA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 G ++++IEKD +F P L+ +S P ++ I+ D L EK F + I Sbjct: 77 GVEQLLLIEKDARFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPKHLKKSWDDEPPDI 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W +S P + +TL FQKEVGER+TA S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSKRDGPFIYGRTQMTLTFQKEVGERLTANPGSSQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ F I F P P+V V+HF P + P I E ++K+ Q F R Sbjct: 197 SIMAQHLCTVENCFIIPGQAFVPKPEVDVAVVHFTPLVQPKIEQPFELVEKVVQSVFQFR 256 Query: 234 RKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITN 274 RK + ++ L EN L+ A ++ LR LS+ F + N Sbjct: 257 RKYCFRGIETLFPENGRLKRTEQLMMTANVDPTLRPFQLSMSQFRNLCN 305 >gi|304311710|ref|YP_003811308.1| Dimethyladenosine transferase [gamma proteobacterium HdN1] gi|301797443|emb|CBL45663.1| Dimethyladenosine transferase [gamma proteobacterium HdN1] Length = 279 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 135/259 (52%), Gaps = 11/259 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D +++ I + ++EIG G G LT LL ++ IE D+ Sbjct: 14 KKRFGQNFLHDPHVIDSIVAAVNPQKSDNLVEIGPGQGALTGALLPY-LDQLQAIELDRD 72 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L S +L I Q DAL+ DF + +R++ NLPYNI T LLF+ + Sbjct: 73 LIPYLL-ASFATTGKLHIHQADALRFDFGTLIHPDKKLRVVGNLPYNISTPLLFHLLD-- 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV +R+ A N YGRL ++ + +FD+ P F P PKV Sbjct: 130 -YASGIQDMHFMLQKEVVDRMAAGANEEAYGRLGIMIQYHCNVEALFDVPPEAFNPPPKV 188 Query: 202 TSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGENLLHQAGIET 257 TS ++ P H+ P ++ L + EAF +RRKT+R +LK RL E+ L GI+ Sbjct: 189 TSAIVRLTPRSAHVTPA-LDVKLLGTLVTEAFTQRRKTVRNALKNRLSPED-LEACGIDL 246 Query: 258 NLRAENLSIEDFCRITNIL 276 LR ENL++ D+ + N L Sbjct: 247 KLRPENLTLNDYVSLANYL 265 >gi|226325806|ref|ZP_03801324.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758] gi|225205930|gb|EEG88284.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758] Length = 294 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 155/293 (52%), Gaps = 19/293 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ IL Y +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTIE-ILQKYNFNFQKKFGQNFLIDEHVLDKIIRAAEITKDDYVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD---FEKFFNISSP 118 TQ L AR+V +E D+ PIL+D ++ N + II +D LKVD K N P Sbjct: 64 TQ-YLACAAREVTAVEIDRALIPILEDTLKEYDN-VSIINEDILKVDIAALAKEKNGGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---LESITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI H P+ E L ++ + +F +RRKT Sbjct: 179 QYYAEPYIVANVPPNCFMPRPAVGSAVIRLTRHQKPPVEVMDEKLMFRLIRASFNQRRKT 238 Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L LK G NL + + G +++R E L +E+F R+TNI+ + + Sbjct: 239 LANGLKNSGELNLSKEVITAAIEKLGKGSSVRGEALDLEEFARLTNIIKEEME 291 >gi|224475635|ref|YP_002633241.1| dimethyladenosine transferase [Staphylococcus carnosus subsp. carnosus TM300] gi|254807884|sp|B9DLD0|RSMA_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|222420242|emb|CAL27056.1| ribosomal RNA adenine dimethylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 296 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 154/281 (54%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y+ KK +GQNFL+D+NI++KI ++S + VIE+G G G+LT+ L A Sbjct: 13 RALLDKYQFDFKKSLGQNFLIDVNIIQKIIDASNIDERTGVIEVGPGMGSLTEQLAK-HA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV+ E DQ+ P+L+D S + N + +I +D LK D + + I ++ANLP Sbjct: 72 KKVVAFEIDQRLIPVLEDTLSDYDN-VTVINEDILKADVVEAVQTHLSDCDKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N +S + P + ++ QKEVGER+ A+ + YG LS++ + T+ + Sbjct: 131 YYITTPILLNLMSK-SLP--IDGYVVMMQKEVGERLNAEIGTKAYGSLSIVAQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR---QSL 241 + + VF P P V S V+ + PI + + K+T+ AF +RRKT+ QSL Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMKRQAPIVAVDDEDQFFKMTKAAFSQRRKTIANNYQSL 247 Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ + L GI+ R E LSI++F + N L Sbjct: 248 FFDGKQKKYIIKTWLEDGGIDPRRRGETLSIKEFANLFNNL 288 >gi|190360597|ref|NP_001121947.1| dimethyladenosine transferase 1, mitochondrial [Sus scrofa] gi|186886356|gb|ACC93577.1| CGI-75 protein [Sus scrofa] Length = 340 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +K+ K + QNFLLDL + KI +GSL V E+G GPG +T+ +L Sbjct: 17 TIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 G +++V+EKD +F P L+ +S P +L I+ D L E+ F S P + Sbjct: 77 GIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ + PF +TL FQKEV ER+ A K S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + + I F P P+V V+HF P P I + ++K+ Q AF R Sbjct: 197 SIMAQYLCGVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQPFKLVEKVVQNAFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L E LL A ++ LR LS+ F + ++ Sbjct: 257 RKYCYRGLGMLFPEAQRMERTGKLLESADVDPTLRPTQLSVSHFQSLCDV 306 >gi|62900532|sp|Q6LV41|RSMA_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 271 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 13/267 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G LT+ + L K VIE D+ Sbjct: 13 RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSVIELDRD 71 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP+ +L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 72 LAKRLR----HHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLF 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T+ E + + QKEV R+ A YGRL+V+ + ++ T + ++ P F P+ Sbjct: 128 ---TFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESFTPA 184 Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P PC L+ L ++ +E F +RRKT+R K L L G+ Sbjct: 185 PKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDLGVN 244 Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283 LR EN++++ F ++ N L N A Sbjct: 245 PGLRPENITLQQFVKMANWLDANHQNA 271 >gi|322391321|ref|ZP_08064791.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780] gi|321145747|gb|EFX41138.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780] Length = 290 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E L +E+F + + L Sbjct: 245 FGKTDEVKDKLTKALDQAGLSPSVRGEALGLEEFASLADAL 285 >gi|229828784|ref|ZP_04454853.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM 14600] gi|229793378|gb|EEP29492.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM 14600] Length = 290 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 151/282 (53%), Gaps = 18/282 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +L Y +K GQNFL+D +IL+ I +++ ++EIG G G LTQ L G R Sbjct: 12 AVLEKYGFSFQKKYGQNFLIDRHILEGIVDAAQISREDFILEIGPGIGTLTQYLCEAG-R 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128 +V+ +E D++ PIL D S + N +E+I D LK+D N S PI+++ANLPY Sbjct: 71 EVLAVELDRKLIPILADTLSSY-NNVEVICHDVLKLDLSGLIAEKNASRPIKLVANLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + + ES+T++ QKE+ +R+ S YG LS+ + K +MF Sbjct: 130 ITTPIIMSLFESHLP---LESITIMVQKELADRMQEGPGSKDYGALSLAVQYYAKPEVMF 186 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLK---- 242 + P F P PKV S VI H + P+ E+ L ++ + +F +RRKTL LK Sbjct: 187 QVPPSAFIPRPKVGSAVIRLTCHKSCPVEVSDEAYLFRVIRASFNQRRKTLTNGLKNAPD 246 Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RL E + + + G+ +R E L+++ F ++N L + + Sbjct: 247 IRLPKEQITEVIEEMGLPATVRGEMLTLKQFAELSNRLRERE 288 >gi|82775456|ref|YP_401803.1| dimethyladenosine transferase [Shigella dysenteriae Sd197] gi|119365843|sp|Q32K43|RSMA_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|81239604|gb|ABB60314.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Shigella dysenteriae Sd197] Length = 273 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+ + NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLHVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKVYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|307128183|ref|YP_003880214.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B] gi|306485245|gb|ADM92114.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B] Length = 290 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|257081179|ref|ZP_05575540.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol] gi|256989209|gb|EEU76511.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol] gi|323480116|gb|ADX79555.1| dimethyladenosine transferase [Enterococcus faecalis 62] Length = 295 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T ++ +++ S D + ++ QKEV +RI A+ + YG LS+ + +A Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S +I P + K+T+ +F RRKTL +L Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAMTVTNEKEFFKLTKASFQLRRKTLWNNLT 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540] gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540] Length = 297 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 22/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 +T + ++IL+ Y + KK GQNFL D IL++I E++ D VIEIG G G Sbjct: 4 LTQIGSRKTTRSILNEYGLHAKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGA 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNI 115 LT+ L A +V+ +E DQ P+L+ + + N + +I D L+ + ++F + Sbjct: 64 LTEKLAQ-AAGQVVAVEIDQDLIPVLEKTLAAYDN-VTVINQDILRANLPELIQQQFTDP 121 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 + PI+++ANLPY I + +L N +++ P W S+T++ QKEV +R+TA+ + YG L+ Sbjct: 122 TKPIKVVANLPYYITSPILMNLLAS---PVEWSSITVMMQKEVAQRLTAKPGTKQYGALT 178 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGK 232 + ++ A + F++S H F P+P V S ++ P+ P + L + F Sbjct: 179 LAIEYQMDAEVAFNVSRHSFIPAPNVDSAIVVLKQRQQPLTTKPFDKQKLMGFIRGCFAH 238 Query: 233 RRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 RRK+L +L+ + G++ +L + I R E L++ F + N L Sbjct: 239 RRKSLWNNLQSVIGKDANIKAKMTKVLEENEISPQFRPEKLTLAQFINLLNAL 291 >gi|148998515|ref|ZP_01825956.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70] gi|168576615|ref|ZP_02722481.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016] gi|307068593|ref|YP_003877559.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200] gi|147755708|gb|EDK62754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70] gi|183577641|gb|EDT98169.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016] gi|306410130|gb|ADM85557.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus pneumoniae AP200] gi|332199299|gb|EGJ13377.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317] Length = 290 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|255020167|ref|ZP_05292236.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756] gi|254970309|gb|EET27802.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756] Length = 282 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/263 (38%), Positives = 144/263 (54%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKD 79 KK GQNFL+ I+++I + G ++EIG G G LT+ LL A VIE D Sbjct: 10 KKRFGQNFLVQPAIVQRIVAAVGPGSSDALVEIGPGRGALTRALLAALAPAQRLRVIELD 69 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWI 138 + PIL++++ P RLEI+ DALKVDF K + + +RI+ NLPYNI T LLF+ + Sbjct: 70 RDLLPILRNLAP--PERLEILAADALKVDFLKIADTAGARLRIVGNLPYNISTPLLFHLL 127 Query: 139 SADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 E++T + Q+EV ERI A+ S YGRLSV+ M+F ++P F Sbjct: 128 GQ------AEAITDMHFMLQREVVERIVARPGSGTYGRLSVMLQAYCLVEMLFPVAPGNF 181 Query: 196 FPSPKVTSTVIHFIP-HLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S + +P H PI ++L ++ + AF +RRKTL + + Q Sbjct: 182 HPVPKVDSAFLRLVPRHPTPIAPARQALFAEVVRLAFAQRRKTLANNFRSRLPAPAWEQL 241 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 I+ RAE LS++DF R+T L Sbjct: 242 AIDPGRRAETLSVDDFFRLTEAL 264 >gi|197301323|ref|ZP_03166408.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC 29176] gi|197299641|gb|EDY34156.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC 29176] Length = 297 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 158/291 (54%), Gaps = 21/291 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ +L Y + +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 11 TLGNPQNTIE-VLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDVVLEIGPGIGTM 69 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A+KVI +E D+ PIL+D S++ N + +I D LKVD K N P Sbjct: 70 TQ-YLACAAKKVIAVEIDKALIPILEDTLSEYEN-VRVINHDVLKVDIAKLAEEENGGKP 127 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + P +S+T++ QKEV +R+ + YG LS+ Sbjct: 128 IKVVANLPYYITTPIIMGLF--ENHVPI-KSITVMVQKEVADRMQVGPGTKDYGALSLAV 184 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + K ++ ++ P+ F P PKV S VI + NP P ++ K ++ + +F +RRK Sbjct: 185 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYENP-PVTVKDEKLMFRLIRASFNQRRK 243 Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL LK + E + G ++R E L++E+F ++ ++L++ Sbjct: 244 TLANGLKNSPELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADLLSE 294 >gi|86516099|gb|ABC97700.1| KsgA [Shigella flexneri] Length = 256 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ +G R ++ VIE D+ Sbjct: 3 GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59 Query: 84 PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P P Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ Sbjct: 173 KVDSAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +RAEN+S+ +C++ N L +N Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254 >gi|301024796|ref|ZP_07188434.1| dimethyladenosine transferase [Escherichia coli MS 196-1] gi|299880286|gb|EFI88497.1| dimethyladenosine transferase [Escherichia coli MS 196-1] Length = 273 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116 + +G R ++ VIE D+ L+ HP +L I Q DA+ +F + + Sbjct: 53 E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+R SL L +L I+ +RAEN+S+ +C++ N L +N Sbjct: 223 KTIRNSLGNLFSVEVLTGMRIDPAMRAENISVAQYCQMANYLAEN 267 >gi|313625508|gb|EFR95235.1| dimethyladenosine transferase [Listeria innocua FSL J1-023] Length = 295 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N + ++ +D LK D E+F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL 241 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 242 K------RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 + E L L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKEELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|295108631|emb|CBL22584.1| dimethyladenosine transferase [Ruminococcus obeum A2-162] Length = 290 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++++ +L Y + +K GQNFL+D ++L +I ++S V+EIG G G +T Sbjct: 6 LGNPKYTIE-VLQKYGFVFQKRFGQNFLIDTHVLDRIIQASEITKDDFVLEIGPGIGTMT 64 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L AR+V +E D PILKD + N + +I D LK D K N PI Sbjct: 65 QYLAD-SAREVTAVEIDDALIPILKDTLKEWDN-VNVIHGDILKTDIRKIADEKNQGRPI 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ S YG LS+ Sbjct: 123 KVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGALSLAVQ 179 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI H NP P + K +I + +F +RRKT Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNP-PVTAKDEKLMFRIIRASFNQRRKT 238 Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L LK + E + + G+ N+R E L++E F ++++I D Sbjct: 239 LANGLKNSQELNYTKEQVEAAITECGLPLNIRGEALTLEQFAKLSDIFFD 288 >gi|258510150|ref|YP_003183584.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476876|gb|ACV57195.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 284 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 17/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +K +L + +I KK GQNFL+D +L I + V+E+G G G LT L Sbjct: 6 AREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVAPDARTVVLEVGPGLGALTAALA 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII-- 122 A++V+ IEKD+ P+L ++ + H N E++ +D LKVD + R++ Sbjct: 66 ER-AKRVVAIEKDESLRPVLDEVLAPHGN-AEVVYEDCLKVDLRALLAPRLDEGDRLVFA 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +LF + +D P ++ ++ Q+EV +R+ A+ YG LS+ +R Sbjct: 124 ANLPYYVTTPILFQVLESDV--PVSRAVVMV-QREVADRMVARPGGKDYGVLSIGVQYRG 180 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS 240 + +F++ P F P P V S V+ P + +L ++ + AFG RRKTL + Sbjct: 181 EVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPAVRAADEAALFRVVRAAFGTRRKTLENA 240 Query: 241 LKRLGG--ENLLHQ----AGIETNLRAENLSIEDFCRITN 274 L G + ++ Q AGI+ RAE LS+ DF R+ + Sbjct: 241 LAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLAD 280 >gi|86516027|gb|ABC97664.1| KsgA [Shigella boydii] gi|86516033|gb|ABC97667.1| KsgA [Shigella boydii] gi|86516035|gb|ABC97668.1| KsgA [Shigella boydii] gi|86516037|gb|ABC97669.1| KsgA [Shigella boydii] gi|86516039|gb|ABC97670.1| KsgA [Shigella boydii] gi|86516043|gb|ABC97672.1| KsgA [Shigella boydii] gi|86516047|gb|ABC97674.1| KsgA [Shigella boydii] gi|86516051|gb|ABC97676.1| KsgA [Shigella boydii] gi|86516055|gb|ABC97678.1| KsgA [Shigella boydii] gi|86516057|gb|ABC97679.1| KsgA [Shigella dysenteriae] gi|86516059|gb|ABC97680.1| KsgA [Shigella dysenteriae] gi|86516061|gb|ABC97681.1| KsgA [Shigella dysenteriae] gi|86516063|gb|ABC97682.1| KsgA [Shigella dysenteriae] gi|86516065|gb|ABC97683.1| KsgA [Shigella dysenteriae] gi|86516067|gb|ABC97684.1| KsgA [Shigella dysenteriae] gi|86516069|gb|ABC97685.1| KsgA [Shigella dysenteriae] gi|86516073|gb|ABC97687.1| KsgA [Shigella dysenteriae] gi|86516075|gb|ABC97688.1| KsgA [Shigella dysenteriae] gi|86516077|gb|ABC97689.1| KsgA [Shigella dysenteriae] gi|86516079|gb|ABC97690.1| KsgA [Shigella dysenteriae] gi|86516081|gb|ABC97691.1| KsgA [Shigella flexneri] gi|86516083|gb|ABC97692.1| KsgA [Shigella flexneri] gi|86516085|gb|ABC97693.1| KsgA [Shigella flexneri] gi|86516087|gb|ABC97694.1| KsgA [Shigella flexneri] gi|86516093|gb|ABC97697.1| KsgA [Shigella flexneri] gi|86516097|gb|ABC97699.1| KsgA [Shigella flexneri] gi|86516101|gb|ABC97701.1| KsgA [Escherichia coli] gi|86516103|gb|ABC97702.1| KsgA [Escherichia coli] gi|86516105|gb|ABC97703.1| KsgA [Escherichia coli] Length = 256 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ +G R ++ VIE D+ Sbjct: 3 GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59 Query: 84 PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P P Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +RAEN+S+ +C++ N L +N Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254 >gi|225869784|ref|YP_002745731.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047] gi|254807885|sp|C0M8P2|RSMA_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225699188|emb|CAW92442.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047] Length = 290 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K+IL Y KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 70 -EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKI 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ F RRKTL +L Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRRKTLWNNLVSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L AGI+ ++R E LSI+DF R+ + L Sbjct: 245 FGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADAL 285 >gi|170725376|ref|YP_001759402.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908] gi|226732625|sp|B1KGH9|RSMA_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169810723|gb|ACA85307.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908] Length = 267 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 149/283 (52%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + K+ V+E D+ L+ +HP ++L+I Q DAL+ DF + + Sbjct: 53 EPVAN-AIDKLTVVELDKDLVARLQ----EHPTLKDKLDIHQGDALQFDFSQLVEEGRQM 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V+ Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237 + + + ++ P F P PKV S V+ +P+ + P PC ++ L+ +T AF RRKTL Sbjct: 165 YHCQVMPVLEVPPGSFTPPPKVDSAVVRLVPYKVKPWPCKDVDQLRHLTTTAFNMRRKTL 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R +LK + + + GI+ LR E +++E + + N + D Q Sbjct: 225 RNNLKHMISDEEFAELGIDATLRPEQITVEQYVAMANFVVDKQ 267 >gi|16799304|ref|NP_469572.1| dimethyladenosine transferase [Listeria innocua Clip11262] gi|27151588|sp|Q92F79|RSMA_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|16412646|emb|CAC95460.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria innocua Clip11262] Length = 295 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N + ++ +D LK D E+F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL 241 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 242 K------RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 + E L L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKEELIEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|326772378|ref|ZP_08231663.1| dimethyladenosine transferase [Actinomyces viscosus C505] gi|326638511|gb|EGE39412.1| dimethyladenosine transferase [Actinomyces viscosus C505] Length = 367 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I P K +GQNF+ D +++I ++G TV+EIG G G+LT LL G Sbjct: 73 VRGLCQALGIRPTKTLGQNFVHDAGTVRRIVRTAGVRPQDTVLEIGPGLGSLTLALLETG 132 Query: 70 ARKVIVIEKD---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIA 123 AR VI +E D + P+ + D RL +IQ DAL + + P R++A Sbjct: 133 AR-VIAVEIDPALARALPVTVADRMPHAAGRLTLIQADALSITGPDSLGEAEPPPTRLVA 191 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + A P ES+T++ Q EV +R+ A+ S YG SV W + Sbjct: 192 NLPYNVAVPVLLTALEAL---PSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAWYAE 248 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242 A IS HVF+P P V S ++ + P E + + AF +RRKTLR++L Sbjct: 249 ARRTLTISRHVFWPVPNVDSALVELMRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALA 308 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L G E+ L A I+ R E L I F + +L Sbjct: 309 KLAGGADAAESALRAADIDPTRRGETLDITAFAALAEVL 347 >gi|22122569|ref|NP_666186.1| dimethyladenosine transferase 1, mitochondrial [Mus musculus] gi|81878249|sp|Q8JZM0|TFB1M_MOUSE RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|21039484|gb|AAM33651.1|AF508971_1 transcription factor b1 [Mus musculus] gi|21410720|gb|AAH32930.1| Transcription factor B1, mitochondrial [Mus musculus] gi|148669697|gb|EDL01644.1| transcription factor B1, mitochondrial [Mus musculus] Length = 345 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 145/290 (50%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ + + K + QNFLLDL + KI +GSL + V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F NI + Sbjct: 77 NVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S + RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISLKDGPFVYGRTKMTLTFQKEVAERLVATTGSKQHSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + +F I F P PKV V+H P + P I + ++K+ Q AF R Sbjct: 197 SIMAQYLCNVEHLFTIPGKAFVPKPKVDVGVVHLTPLIEPKIKQPFKLVEKVVQNAFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L E LL A I+ LR +LS+ F + ++ Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDV 306 >gi|168487122|ref|ZP_02711630.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00] gi|183569963|gb|EDT90491.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00] Length = 290 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|86148123|ref|ZP_01066423.1| dimethyladenosine transferase [Vibrio sp. MED222] gi|218708408|ref|YP_002416029.1| dimethyladenosine transferase [Vibrio splendidus LGP32] gi|254808268|sp|B7VIE2|RSMA_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85834110|gb|EAQ52268.1| dimethyladenosine transferase [Vibrio sp. MED222] gi|218321427|emb|CAV17379.1| Dimethyladenosine transferase [Vibrio splendidus LGP32] Length = 271 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/265 (34%), Positives = 143/265 (53%), Gaps = 13/265 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G +T+ + L K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA+K DFE+ ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLAEKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K T + ++ P F P Sbjct: 127 E---FHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P P L+ L ++ +E F +RRKT+R K L + +L + G+ Sbjct: 184 PKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 +R ENL++E F + N L D+ + Sbjct: 244 PGMRPENLTLEQFVDMANWLHDSHN 268 >gi|329296587|ref|ZP_08253923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Plautia stali symbiont] Length = 274 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 26/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H HY +K GQNFL D I+ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQKGEAMVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 + +G R + V+E D+ L+ HP +L I Q DA+ DF Sbjct: 53 E---PVGERLDALTVVELDRDLAARLQT----HPFLGPKLTIYQQDAMTFDFSALSKEQG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + + QKEV + A S YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNHLVACPGSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +P P P + L +IT EAFG+RR Sbjct: 163 MAQYYCQVIPVLEVPPQSFTPPPKVDSAVVRLLPFTQPPYPVSDVRLLGRITTEAFGQRR 222 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR SL L L + I+ +LRAEN+++ +C++ N L +Q Sbjct: 223 KTLRNSLGHLFTAGALDELNIDASLRAENVTVAQYCQLANWLGHHQ 268 >gi|291238518|ref|XP_002739171.1| PREDICTED: tfb1m protein-like [Saccoglossus kowalevskii] Length = 259 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 15/249 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ Y + +K + QNFLLD+N+ KI +GSL+G V E+G GPG +T+ +L Sbjct: 11 TIGDIIRMYGLRAEKQLSQNFLLDMNLTDKIVRHAGSLNGRYVCEVGPGPGGITRSILHS 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------DFEKFFNISSP-I 119 GA+KVIVIEKDQ+F P L+ ++ RL +I D +K D K + P + Sbjct: 71 GAKKVIVIEKDQRFMPSLELLAEASDGRLGLIHGDVMKYNMRNMFPNDLRKAWEDDPPDV 130 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFWE--SLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS+ + P + +TL FQKEV ER+ A P RL Sbjct: 131 HIIGNLPFSVSTPLIIRWMEAISSHSGPFSYGRVQMTLTFQKEVAERLVAGVGDPQRSRL 190 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S+++ K F I F P P V V+HF P ++P I + ++K+ + F R Sbjct: 191 SIMSQHLCKVKHAFTIPGTAFVPKPDVDVGVVHFTPLIDPLIQQPFKLVEKVVRCLFQFR 250 Query: 234 RKTLRQSLK 242 RK ++ ++ Sbjct: 251 RKYCKRGVE 259 >gi|145630268|ref|ZP_01786049.1| dimethyladenosine transferase [Haemophilus influenzae R3021] gi|144984003|gb|EDJ91440.1| dimethyladenosine transferase [Haemophilus influenzae R3021] Length = 287 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 153/288 (53%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116 + + L + V+E D+ L+ HP +L +I+ DA++ DF++ + N++ Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTKENLA 107 Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L+DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLSDN 272 >gi|90409115|ref|ZP_01217237.1| KsgA [Psychromonas sp. CNPT3] gi|90309789|gb|EAS37952.1| KsgA [Psychromonas sp. CNPT3] Length = 272 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 147/286 (51%), Gaps = 21/286 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK+H L H +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNKTH-----LGH---TARKRFGQNFLHDDYIIDSIVAAISPQYDDNIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPI 119 + + + + VIE D+ L D ++HP +L I Q DAL+ DF + + Sbjct: 53 EPVAE-HVKTLHVIELDRD----LADRLAKHPTLSKKLNITQADALQFDFSLLASKEKQL 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ + + + + QKEV R+ A N YGRL+V+ Sbjct: 108 RVFGNLPYNISTPLMFHLFE---YADKIKDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237 + K + ++ P F P+PKV S V+ P+ P + L++L ++ AF +RRKT+ Sbjct: 165 YYCKIIPVLEVPPSAFIPAPKVDSAVVRLEPYDVPPFVAKSLKALNQVCSMAFNQRRKTI 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 R L+ L L ++ RAEN+S+E++ R+ N +TD ++ A Sbjct: 225 RNGLRELLSVEELQLLNVDHTKRAENVSVEEYVRLANYVTDRKEKA 270 >gi|145633499|ref|ZP_01789228.1| dimethyladenosine transferase [Haemophilus influenzae 3655] gi|144985868|gb|EDJ92476.1| dimethyladenosine transferase [Haemophilus influenzae 3655] Length = 287 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 150/288 (52%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQSNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117 + + L + V+E D+ L + HP +L +I+ DA++ DF++ + + Sbjct: 53 EPVGEL-VDHLTVVELDRD----LAERLHHHPFLHQKLTVIETDAMQFDFDELYTTENLA 107 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|86516089|gb|ABC97695.1| KsgA [Shigella flexneri] gi|86516091|gb|ABC97696.1| KsgA [Shigella flexneri] Length = 256 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ +G R ++ VIE D+ Sbjct: 3 GQNFLNDHFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59 Query: 84 PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ----THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P P Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +RAEN+S+ +C++ N L +N Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254 >gi|15603074|ref|NP_246146.1| dimethyladenosine transferase [Pasteurella multocida subsp. multocida str. Pm70] gi|27151601|sp|Q9CLL5|RSMA_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|12721563|gb|AAK03293.1| KsgA [Pasteurella multocida subsp. multocida str. Pm70] Length = 288 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D N++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDNNVIHGIVSAIYPQKDQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117 + + L + V+E D+ L+ HP +++ +I+ DA++ DF + + ++ Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHHKITVIETDAMQFDFGQLYRDANLA 107 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKKQKMRVFGNLPYNISTPLMFHLFK---YHDCIQDMHFMLQKEVVKRLCAGPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ +PH + P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKVLPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L + L + GI+ RAENLSI D+ R+ N LTDN Sbjct: 225 QRRKTLRNALSTLFSADQLTELGIDLTARAENLSIADYARLANWLTDN 272 >gi|256964244|ref|ZP_05568415.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704] gi|307271936|ref|ZP_07553204.1| dimethyladenosine transferase [Enterococcus faecalis TX0855] gi|256954740|gb|EEU71372.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704] gi|306511442|gb|EFM80444.1| dimethyladenosine transferase [Enterococcus faecalis TX0855] Length = 295 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 150/287 (52%), Gaps = 20/287 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + +A++ Sbjct: 132 YYITTPIMMHFLESSLD---LAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEASV 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S +I P + K+T+ +F RRKTL +L Sbjct: 189 AFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKVSFQLRRKTLWNNLTHF 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 249 YGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|225374814|ref|ZP_03752035.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM 16841] gi|225213383|gb|EEG95737.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM 16841] Length = 288 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 144/277 (51%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y +K GQNFL+D ++L+KI E SG V+EIG G G +TQ L AR+ Sbjct: 13 VLQKYNFNFQKKFGQNFLIDTHVLEKIIEESGITKDDFVLEIGPGIGTMTQYLCE-NARE 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 V +E D+ PIL D S + N +E+I DD LKVD K N PI+++ANLPY I Sbjct: 72 VAAVEIDKNLIPILADTLSAYDN-VEVINDDILKVDINKLAEEKNGGKPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +S+T++ QKEV +R+ + YG LS+ + K ++ Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQVGPGTKEYGALSLAVQYYAKPEIVAI 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGE 247 + P+ F P P V S VI H P+ E L KI + +F +RRKTL L Sbjct: 188 VPPNCFMPRPNVGSAVIRLTRHKEVPVQVNDEKLMFKIIRASFNQRRKTLANGLNNAPDI 247 Query: 248 NL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 +L + + G+ +R E L+++ F +++NI+ Sbjct: 248 HLSKEVIQESIEELGVPVTIRGEALTLQQFAQLSNII 284 >gi|300812073|ref|ZP_07092521.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496912|gb|EFK31986.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 296 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G G+LT+ LL G Sbjct: 15 AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73 Query: 72 KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121 KV E DQ IL + + Q R ++I D LK DF FF++ P+++ Sbjct: 74 KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLGKPVKV 133 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ S YG LS+ + Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240 + ++ F P PKV S V+ P P + ++ + F +RRKTL + Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L E LL ++ R E L+I DF RI+ + + Sbjct: 251 LKTLLPDKEDREKLLDDLDLDPRQRPEQLAIGDFIRISQAIAE 293 >gi|153811992|ref|ZP_01964660.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174] gi|149831891|gb|EDM86977.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174] Length = 290 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 148/290 (51%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++++ +L Y + +K GQNFL+D +L +I E+S V+EIG G G +T Sbjct: 6 LGNPKYTIE-VLQKYGFVFQKRFGQNFLIDTRVLDRIIEASEITKDDFVLEIGPGIGTMT 64 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L AR+V +E D PIL+D + N + +I D LK D K N PI Sbjct: 65 QYLAD-AAREVTAVEIDDALIPILQDTLKEWDN-VSVIHGDILKTDIRKIADEKNQGRPI 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ S YG LS+ Sbjct: 123 KVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGALSLAVQ 179 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI H NP P + K +I + +F +RRKT Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNP-PVQAKDEKLMFRIIRASFNQRRKT 238 Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L LK + E + + G+ N+R E L++E F + +I D Sbjct: 239 LANGLKNSQELQFTKEQVEQAITECGLPLNIRGEALTLEQFAALADIFVD 288 >gi|315163005|gb|EFU07022.1| dimethyladenosine transferase [Enterococcus faecalis TX0645] Length = 295 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T ++ +++ S D + ++ QKEV +RI A+ + YG LS+ + +A Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S +I P + K+T+ +F RRKTL +L Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTCRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|84393695|ref|ZP_00992445.1| dimethyladenosine transferase [Vibrio splendidus 12B01] gi|84375694|gb|EAP92591.1| dimethyladenosine transferase [Vibrio splendidus 12B01] Length = 271 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 141/262 (53%), Gaps = 13/262 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G +T+ + L K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA+K DFE+ ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLADKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K T + ++ P F P Sbjct: 127 E---FHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P P L+ L ++ +E F +RRKT+R K L + +L + G+ Sbjct: 184 PKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTD 278 +R ENL++E F + N L D Sbjct: 244 PGMRPENLTLEQFVDMANWLYD 265 >gi|294139568|ref|YP_003555546.1| dimethyladenosine transferase [Shewanella violacea DSS12] gi|293326037|dbj|BAJ00768.1| dimethyladenosine transferase [Shewanella violacea DSS12] Length = 272 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 149/283 (52%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H KK GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH-----LGH---TAKKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + K+ V+E D+ L +HP ++LEI Q DAL DF + + Sbjct: 53 EPVAE-SIDKLTVVELDKDLVARL----HEHPTLKHKLEIHQGDALNFDFSQLIEEGKEL 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ NLPYNI T L+F+ + + + + QKEV R++A + YGRL+V+ Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEHIKHMHFMLQKEVVLRLSATPGTKAYGRLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237 + + + ++ P F P+PKV S V+ +P+ P PC +E L+++T AF RRKTL Sbjct: 165 YHCQIMPVLEVPPECFTPAPKVNSAVVRLVPYKQKPWPCSDVEFLRRMTTTAFSMRRKTL 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R +LK + + I+++LR E +++E + + N+L D + Sbjct: 225 RNNLKHMITDEEFLALNIDSSLRPEQITVEQYVSMANMLLDKK 267 >gi|315656046|ref|ZP_07908944.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333] gi|315490110|gb|EFU79737.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333] Length = 309 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 147/297 (49%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNI----SSPI 119 LG KVI IE DQ+ L +QH L ++ DAL++ E I ++P Sbjct: 66 ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLEIPAGWAAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPNLESALVMVQAEVADRWVAGVADDAYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF--------------IPHLNPIPCCLESLKK- 224 W + F + +VF+P P V STV+ F + N +E+L++ Sbjct: 182 WWGRTKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLREDLKLDLENLTDEAIETLRQE 241 Query: 225 ---ITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273 AF +RRKTLRQSL G LL AGI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPDAAAVLLESAGIIPGLRAERLSVTDFTKIA 298 >gi|90411944|ref|ZP_01219952.1| dimethyladenosine transferase [Photobacterium profundum 3TCK] gi|90327202|gb|EAS43574.1| dimethyladenosine transferase [Photobacterium profundum 3TCK] Length = 271 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 13/267 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G +T+ + L K VIE D+ Sbjct: 13 RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGRL-VDKFSVIELDRD 71 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP+ +L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 72 LAKRLR----HHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLF 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T+ E + + QKEV R+ A YGRL+V+ + ++ T + ++ P F P+ Sbjct: 128 ---TFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESFTPA 184 Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P PC L+ L ++ +E F +RRKT+R K L L G+ Sbjct: 185 PKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEHLGVN 244 Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283 LR EN++++ F ++ N L N A Sbjct: 245 PGLRPENITLQQFVKMANWLDANHQNA 271 >gi|195977405|ref|YP_002122649.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869264|ref|YP_002745212.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus] gi|226732627|sp|B4U0U9|RSMA_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|259494258|sp|C0MF36|RSMA_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|195974110|gb|ACG61636.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225702540|emb|CAX00496.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus] Length = 290 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 70 -EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKI 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ F RRKTL +L Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRRKTLWNNLVSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L AGI+ ++R E LSI+DF R+ + L Sbjct: 245 FGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADAL 285 >gi|153956353|ref|YP_001397118.1| dimethyladenosine transferase [Clostridium kluyveri DSM 555] gi|219856668|ref|YP_002473790.1| hypothetical protein CKR_3325 [Clostridium kluyveri NBRC 12016] gi|146349211|gb|EDK35747.1| KsgA [Clostridium kluyveri DSM 555] gi|219570392|dbj|BAH08376.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 281 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 147/274 (53%), Gaps = 14/274 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN S K I+ Y K +GQNFL+D ++L+ I E + VIEIG G G LT Sbjct: 1 MNN--LSTKEIVEKYNFRFSKNLGQNFLIDNSVLQDILEGTDINKNDFVIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A+KV IE D ILK+ +PN E+I D LK +F + S I+I+ Sbjct: 59 KELLK-RAKKVCAIELDSDLIAILKEELKHYPN-FELIHKDVLKTNFNEIIKDESSIKIV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ ++ +++LT++ QKEVGER+ ++ N YG LS+L + Sbjct: 117 ANLPYYITTPIISKILNNKYN---FKTLTIMIQKEVGERMISEPNCKRYGALSLLVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQS 240 ++ +SP+ F PSPKV S VI NP + E L +I + +F RRKTL + Sbjct: 174 DVEVLRKVSPYAFIPSPKVESIVIKLTKLNNPRVKIKSEDLFFRIIRCSFNMRRKTLWNA 233 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDF 269 LK L E ++ I+ R E LSIE+F Sbjct: 234 LKALKLSREYIEKAFDKSRIDPKRRGETLSIEEF 267 >gi|327488831|gb|EGF20630.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058] Length = 290 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRGFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKSYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + KI++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKISKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADAL 285 >gi|253681083|ref|ZP_04861886.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873] gi|253562932|gb|EES92378.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873] Length = 281 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 146/273 (53%), Gaps = 15/273 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ Y K +GQNFL D +L I S + VIEIG G G LT+ LL A Sbjct: 7 KEIVQKYNFKFTKSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELLK-KA 65 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +KV +E D PIL++ + N ++I DALK++F++ ++++ANLPY + Sbjct: 66 KKVCAVELDSNLIPILQE-ELKEFNNFQLIHKDALKINFKELIGDEKSVKVVANLPYYVT 124 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + ++SLT++ QKEV ERI ++ N YG LS+L + T++ + Sbjct: 125 TPIIARLLKEGYN---FKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTTIIRKV 181 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG- 246 P F P PKV S +I + LN ++ + KI +++F RRKTLR ++K LG Sbjct: 182 PPTCFIPQPKVDSIIIR-LDRLNEPRVKVQDKELFFKIVRQSFNMRRKTLRNAIKSLGFI 240 Query: 247 -----ENLLHQAGIETNLRAENLSIEDFCRITN 274 E + + A I+ R E L++E+F ++ + Sbjct: 241 SSDKIEKVFNDANIDPRRRGETLTLEEFGKLAD 273 >gi|323340527|ref|ZP_08080782.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644] gi|323092071|gb|EFZ34688.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644] Length = 296 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y + KK +GQNFL DLNILKKI ++ + VIEIG G G LT+ L A Sbjct: 15 RAIMETYGLTFKKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAK-SA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +V+ +E D + P+L + S + N ++I++ D LK D ++ F+ I+++ANLP Sbjct: 74 HQVMALEIDSRLIPVLSETLSPYDN-VKIVEQDVLKADLKELIAQNFDGRHKIKLVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ + + D +E++ ++ QKEV +R+ AQ + YG LSV + A + Sbjct: 133 YYITTPIVMHLLEVDVD---FETIVVMMQKEVADRLAAQPGTKDYGSLSVAVQYEMDAKI 189 Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P PKV S +I +P KK+ + F RRK+L +L+ L Sbjct: 190 AFIVPKTVFMPQPKVDSAIIALNRKDEKPDVPVDEPFFKKMVKGIFLHRRKSLWNNLQGL 249 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E+ L A IE ++RAE LSI R+ + L Sbjct: 250 YGKDPSTREKLEHALKNAEIEKSVRAERLSISQMVRLADNL 290 >gi|293573156|ref|ZP_06684093.1| dimethyladenosine transferase [Enterococcus faecium E980] gi|291606794|gb|EFF36179.1| dimethyladenosine transferase [Enterococcus faecium E980] Length = 294 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 20/285 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L + A Sbjct: 14 KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQL-AMHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E D + P+L D + N + II D LK D + F+ P++++ANLP Sbjct: 73 KQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + +A++ Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S ++ P + + ++T+ AF +RRKTL +L+ Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G++ L AGI+ R E LS+++F ++N +++N+ Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293 >gi|227552435|ref|ZP_03982484.1| dimethyladenosine transferase [Enterococcus faecium TX1330] gi|257888325|ref|ZP_05667978.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733] gi|257896785|ref|ZP_05676438.1| dimethyladenosine transferase [Enterococcus faecium Com12] gi|293378583|ref|ZP_06624746.1| dimethyladenosine transferase [Enterococcus faecium PC4.1] gi|227178447|gb|EEI59419.1| dimethyladenosine transferase [Enterococcus faecium TX1330] gi|257824379|gb|EEV51311.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733] gi|257833350|gb|EEV59771.1| dimethyladenosine transferase [Enterococcus faecium Com12] gi|292642912|gb|EFF61059.1| dimethyladenosine transferase [Enterococcus faecium PC4.1] Length = 294 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 20/285 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L + A Sbjct: 14 KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQL-AMHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E D + P+L D + N + II D LK D + F+ P++++ANLP Sbjct: 73 KQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + +A++ Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S ++ P + + ++T+ AF +RRKTL +L+ Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G++ L AGI+ R E LS+++F ++N +++N+ Sbjct: 249 YGKDDQTKTWLSKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293 >gi|68249146|ref|YP_248258.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP] gi|145635368|ref|ZP_01791070.1| dimethyladenosine transferase [Haemophilus influenzae PittAA] gi|81336447|sp|Q4QMZ9|RSMA_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68057345|gb|AAX87598.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP] gi|145267374|gb|EDK07376.1| dimethyladenosine transferase [Haemophilus influenzae PittAA] Length = 287 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 150/288 (52%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117 + + L + V+E D+ L+ HP +L +I+ DA++ DF++ + + Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|327468444|gb|EGF13929.1| dimethyladenosine transferase [Streptococcus sanguinis SK330] Length = 290 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKSYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSCFGKSEETKDKLTAALERAELSPSVRGEALSLEEFARLADAL 285 >gi|167465157|ref|ZP_02330246.1| dimethyladenosine transferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381202|ref|ZP_08055205.1| dimethyladenosine 16S ribosomal RNA transferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154778|gb|EFX47049.1| dimethyladenosine 16S ribosomal RNA transferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 301 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 29/297 (9%) Query: 3 MNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53 MN+ SHS K I+ + KK +GQNFL+DLNIL++I ++ +E Sbjct: 1 MNSHSHSSRDVATPRKTKEIIQKHGFSFKKSLGQNFLMDLNILRQIVSAAELTSQKGALE 60 Query: 54 IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF- 112 IG G G LTQ L A KV+ +E DQ+ PIL + +P E+I D LK+D ++ Sbjct: 61 IGPGIGALTQQLAK-QAGKVVAVEIDQRLLPILSETLEGYPA--EVIHGDVLKMDLKELL 117 Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 F S + ++ANLPY + T ++ + + P E++ ++ QKEV ER+ A S Sbjct: 118 RDKFQQVSAVTVVANLPYYVTTPIIMKLLE-NKLP--LENIVVMIQKEVAERMAAVPGSK 174 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQ 227 YG LS+ + +A ++ + VF P P V S VI + P+ E+ ++ Q Sbjct: 175 DYGSLSIAVQYYCEARVISIVPRTVFVPQPNVDSAVIKLALRKEPPVRVSDEAFFFEVIQ 234 Query: 228 EAFGKRRKTLRQSL--KRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 +F +RRKT+ +L + EN LL +AGI+ + R E LSIE+F R++ IL Sbjct: 235 ASFAQRRKTIYNNLAARYCSKENKKEMEALLREAGIQPSRRGETLSIEEFARLSEIL 291 >gi|262281831|ref|ZP_06059600.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA] gi|262262285|gb|EEY80982.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA] Length = 290 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-NAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+T+ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVTKASFVHRRK 235 Query: 236 TLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G E L +A + N+R E L + F R+++ L Sbjct: 236 TLWNNLTSYFGKSEEVKTKLERALEKADLAANVRGEALDLAAFARLSDAL 285 >gi|325688925|gb|EGD30933.1| dimethyladenosine transferase [Streptococcus sanguinis SK115] Length = 290 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D S N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-NAAEVMAFEIDDRLVPILADTLSDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKSYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSYFGKSEETKGKLTAALERANLSPSVRGEALSLEEFARLADAL 285 >gi|257899761|ref|ZP_05679414.1| dimethyladenosine transferase [Enterococcus faecium Com15] gi|257837673|gb|EEV62747.1| dimethyladenosine transferase [Enterococcus faecium Com15] Length = 294 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 154/285 (54%), Gaps = 20/285 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L + A Sbjct: 14 KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQL-AMHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E D + P+L D + N + II D LK D + F P++++ANLP Sbjct: 73 KQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFQEELPLKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + +A++ Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S ++ P + + ++T+ AF +RRKTL +L+ Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G++ L AGI+ R E LS+++F ++N +++N+ Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293 >gi|325579206|ref|ZP_08149162.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC 33392] gi|325159441|gb|EGC71575.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC 33392] Length = 287 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 151/288 (52%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVSAIHPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116 + + L + V+E D+ L+ HP RL +I+ DA++ DF + + N++ Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQRLTVIETDAMQFDFGELYTKENLA 107 Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSAEDLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|319946185|ref|ZP_08020425.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641] gi|319747567|gb|EFV99820.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641] Length = 291 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D N + ++ D LKVD ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGALSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243 F + VF P+P V S ++ + P + +++ +F RRKTL +L R Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREEPAVTVKDEDFFFTVSKASFVHRRKTLWNNLTSR 244 Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E + AG++ ++R E LS+EDF R+ + L D Sbjct: 245 FGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLD 287 >gi|314937300|ref|ZP_07844642.1| dimethyladenosine transferase [Staphylococcus hominis subsp. hominis C80] gi|313654596|gb|EFS18346.1| dimethyladenosine transferase [Staphylococcus hominis subsp. hominis C80] Length = 296 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 22/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L+ + KK +GQNFL+D+NI+ KI ++S +IE+G G G+LT+ L A Sbjct: 13 KELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLAK-SA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125 +KV+ E DQ+ P+LK+ + HP + + II +D LK D + N I ++ANL Sbjct: 72 KKVLSFEIDQRLIPVLKE--TLHPYDNVTIINEDILKADIATAVNMYLNDCDKIMVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L N + D P + ++ QKEVGER+ A+ + YG LS++T + T+ + Sbjct: 130 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETS 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S V+ + P+ ++ K+ + AF +RRKT+ + + Sbjct: 187 KVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNNYQN 246 Query: 244 LGGE-----NLLHQ----AGIETNLRAENLSIEDFCRI 272 + + +HQ A I+ R E LSI+DF R+ Sbjct: 247 FFKDGKKYKSQIHQWLENANIDPKRRGETLSIQDFARL 284 >gi|153854785|ref|ZP_01996019.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814] gi|149752692|gb|EDM62623.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814] Length = 292 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 153/289 (52%), Gaps = 19/289 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ +L Y +K GQNFL+D ++L KI +S+ + V+EIG G G + Sbjct: 5 TLGNPQNTIE-VLQKYNFSFQKKFGQNFLIDTHVLDKIIQSANITEDDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KVI +E D+ PIL+D S + N + +I +D LK+D +K N P Sbjct: 64 TQ-YLAQAAGKVIAVEIDKNLIPILEDTLSGYDN-VRVINEDVLKLDLKKLADEENNGKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 VKVVANLPYYITTPIIMGLFENEVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKT 236 + ++ ++ P+ F P PKV S VI H P+ E L I + +F +RRKT Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTCHQEKPVQVQDEKLMFNIIRASFNQRRKT 238 Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L LK E + G ++R E L++E+F R++++L+ Sbjct: 239 LANGLKNAATLDFTKEEVEAAIDALGKGASVRGETLTLEEFARLSDLLS 287 >gi|291542930|emb|CBL16040.1| dimethyladenosine transferase [Ruminococcus bromii L2-63] Length = 284 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 153/282 (54%), Gaps = 18/282 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++K ILS + K +GQNFL++ ++ ++AE SG+ +G+ VIE+G G G LT L +L Sbjct: 9 TIKDILSRHGFTFSKSLGQNFLINPSVCPRMAELSGAGEGVGVIEVGPGIGVLTTELCSL 68 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANL 125 A KV+ +E D++ P+L++ S++ N ++++ DD LK+D K + + ANL Sbjct: 69 -ADKVVAVELDKRLLPVLEETLSEYDN-VKVVNDDILKIDLHKLIEEEFQGMDVVVCANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + ++ + D P ++T++ QKE +RI A+ S G ++V + + Sbjct: 127 PYYITSPVIMKLLE-DRLP--ICAITVMVQKEAAQRICAEVGSRASGAVTVSVNYYAEPE 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242 M+F +S F P+PKV S V+ P P ++ K K+ + AF +RRKTL SL Sbjct: 184 MLFSVSAGSFMPAPKVDSAVLRLNILKEP-PVKVDDEKKFFKVVKAAFSQRRKTLSNSLA 242 Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + +L + + N RAE L +EDF I N L D Sbjct: 243 SGLSLPKAEVNAILDNSSVPLNARAEQLKLEDFANIANNLGD 284 >gi|119775951|ref|YP_928691.1| dimethyladenosine transferase [Shewanella amazonensis SB2B] gi|166221699|sp|A1S9G5|RSMA_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119768451|gb|ABM01022.1| dimethyladenosine transferase [Shewanella amazonensis SB2B] Length = 267 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D NI+ +I + D ++EIG G LT Sbjct: 1 MSNKVH-----LGHTA---RKRFGQNFLTDGNIINRIVGAISPDDDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119 + + +G + + VIE D+ LK HP ++L I Q DA+K DF + + Sbjct: 53 EPV-AMGIKNLTVIELDRDLAERLK----VHPTLKDKLTIHQGDAMKFDFSQLVEPERKL 107 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ NLPYNI T L+F+ + E++ + QKEV R++A + YG+L+V+ Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEHIENMHFMLQKEVVLRLSASPGTKAYGKLTVMAQ 164 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTL 237 + + + ++ P F P PKV S V+ +P+ P PC +E L+K+ AF RRKTL Sbjct: 165 YYCQVVPVLEVPPGCFTPPPKVDSAVVRLVPYAEKPWPCHDVEMLRKVCNTAFNMRRKTL 224 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R +LK L + GI+ LR E++S+ + + N L + + Sbjct: 225 RNNLKPLLQDADFDVLGIDAGLRPEDISVAQYVAMANYLCEKR 267 >gi|322387082|ref|ZP_08060693.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779] gi|321142069|gb|EFX37563.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779] Length = 290 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEIKDKLTKALDQAGLVPSVRGEALSLAEFASLADAL 285 >gi|289577364|ref|YP_003475991.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9] gi|289527077|gb|ADD01429.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9] Length = 272 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 146/267 (54%), Gaps = 16/267 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNF+ D NIL KI +SG + V+EIG G G LT+ L +KVI E D++ Sbjct: 9 KKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAK-RVKKVISFEIDRE 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWI 138 + + K+ + + N + II +D +K D K N P +++ANLPY I + ++ + Sbjct: 68 LYAVAKEKLNIYDNVI-IINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPIIMMLL 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 F + +T+L QKEV ERI A + YG L+V ++ K M+F++ P VF P Sbjct: 127 DCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTVFVPP 182 Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGI 255 PKV S+++ +P+ E + + AFG+RRK L +LK LG + ++ +A Sbjct: 183 PKVDSSLVKLEVLDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIIDKAFT 242 Query: 256 ETNL----RAENLSIEDFCRITNILTD 278 +NL R E LSIE+F + N++ D Sbjct: 243 LSNLSPQRRGETLSIEEFAVLANVIYD 269 >gi|260102234|ref|ZP_05752471.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075] gi|260083975|gb|EEW68095.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075] Length = 291 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 24/281 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QVIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKDI------SSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL++ + +R +++ D LK +F++ FF++S PI+ Sbjct: 74 -KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + +++ + F P PKV S+V+ P N +E+ K + + F +RRKTL Sbjct: 190 EMDVKVALEVNHNSFMPRPKVDSSVVVLTPLKN--KPEIENRKHFVWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L E L+ + G++ +R ENL+IE F I+ Sbjct: 248 NNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIS 288 >gi|191639502|ref|YP_001988668.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus casei BL23] gi|190713804|emb|CAQ67810.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus casei BL23] Length = 302 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A + Sbjct: 20 ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 78 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128 V+ +E D + PIL + + +PN ++ +D LK D + F+ ++++ANLPY Sbjct: 79 VVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 137 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + + A P S+T++ QKEV ER++A S YG LS+ F Sbjct: 138 ITTPILLHLLRAQ-LP--LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATAF 194 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246 +S H F P+P V S ++ P+ + S ++ + AF RRKTL +L L G Sbjct: 195 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 254 Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + L A I+ RAE LSI DF R+ L Sbjct: 255 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 291 >gi|86516023|gb|ABC97662.1| KsgA [Shigella boydii] gi|86516025|gb|ABC97663.1| KsgA [Shigella boydii] gi|86516041|gb|ABC97671.1| KsgA [Shigella boydii] gi|86516045|gb|ABC97673.1| KsgA [Shigella boydii] gi|86516049|gb|ABC97675.1| KsgA [Shigella boydii] gi|86516053|gb|ABC97677.1| KsgA [Shigella boydii] gi|86516071|gb|ABC97686.1| KsgA [Shigella dysenteriae] Length = 256 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ +G R ++ VIE D+ Sbjct: 3 GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59 Query: 84 PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P P Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH P P + L +IT EAF +RRKT+R SL L +L G++ Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGLDP 232 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +RAEN+S+ +C++ N L +N Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254 >gi|307707668|ref|ZP_07644148.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261] gi|307616280|gb|EFN95473.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261] Length = 290 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKV+ + F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVNLAQHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285 >gi|228476220|ref|ZP_04060923.1| dimethyladenosine transferase [Staphylococcus hominis SK119] gi|228269705|gb|EEK11204.1| dimethyladenosine transferase [Staphylococcus hominis SK119] Length = 296 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 22/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L+ + KK +GQNFL+D+NI+ KI ++S +IE+G G G+LT+ L A Sbjct: 13 KELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLAK-SA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125 +KV+ E DQ+ P+LK+ + HP + + II +D LK D + N I ++ANL Sbjct: 72 KKVLSFEIDQRLIPVLKE--TLHPYDNVTIINEDILKADIATAVNMYLNDCDKIMVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L N + D P + ++ QKEVGER+ A+ + YG LS++T + T+ + Sbjct: 130 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETS 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S V+ + P+ ++ K+ + AF +RRKT+ + + Sbjct: 187 KVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNNYQN 246 Query: 244 LGGE-----NLLHQ----AGIETNLRAENLSIEDFCRI 272 + + +HQ A I+ R E LSI+DF R+ Sbjct: 247 FFKDGKKYKSKIHQWLENADIDPKRRGETLSIQDFARL 284 >gi|239630423|ref|ZP_04673454.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067575|ref|YP_003789598.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus casei str. Zhang] gi|239526706|gb|EEQ65707.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439982|gb|ADK19748.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus casei str. Zhang] gi|327383599|gb|AEA55075.1| Dimethyladenosine transferase [Lactobacillus casei LC2W] gi|327386791|gb|AEA58265.1| Dimethyladenosine transferase [Lactobacillus casei BD-II] Length = 298 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A + Sbjct: 16 ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 74 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128 V+ +E D + PIL + + +PN ++ +D LK D + F+ ++++ANLPY Sbjct: 75 VVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 133 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + + A P S+T++ QKEV ER++A S YG LS+ F Sbjct: 134 ITTPILLHLLRAQ-LP--LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATAF 190 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246 +S H F P+P V S ++ P+ + S ++ + AF RRKTL +L L G Sbjct: 191 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 250 Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + L A I+ RAE LSI DF R+ L Sbjct: 251 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 287 >gi|94676936|ref|YP_588992.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|122064282|sp|Q1LSS2|RSMA_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94220086|gb|ABF14245.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 271 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 141/264 (53%), Gaps = 16/264 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K +GQ+FL D NI++ I L ++EIG G G LT+ + + + VIE D Sbjct: 12 RKCLGQHFLHDQNIIESIVAVIHPLPSQALVEIGPGLGALTKYVAKY-VKTITVIELDHN 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137 L + HP ++L I+ D +KV+F +S P+RI NLPYNI L+FN Sbjct: 71 LVAYLAN----HPILQHKLNILSQDVMKVNFSDLAKKLSQPLRIFGNLPYNISIALMFNL 126 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + QKEV R+ A+ N+ +YG+LSV+ + ++ D+ P F P Sbjct: 127 FRHIHM---IRDMHFMLQKEVVSRLLAKPNNKNYGKLSVIAQHYCQIDLVLDVPPESFRP 183 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+V S V+ +P++ P P ++ + K +T AF +RRKT+R SL+ L L G Sbjct: 184 VPQVDSAVVRLVPYVIP-PYPVKDINKLYLLTSLAFQQRRKTIRNSLRNLFSVEQLLTQG 242 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 I + LRAENLS+E +C + + L + Sbjct: 243 IISTLRAENLSVEQYCCLASTLAE 266 >gi|319901130|ref|YP_004160858.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108] gi|319416161|gb|ADV43272.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108] Length = 271 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 138/257 (53%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + GI V+E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPGIPVLEVGPGMGVLTQFLVR-KERPVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q II+DD LK++ ++ FN +P + N PYNI +++ F + Sbjct: 63 DFESVAYLRETYPQLEEH--IIEDDFLKMNLQRLFN-GNPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L K +F + HVF P Sbjct: 120 ENKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K++ + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNETQHLGCNEQLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+++F +TN Sbjct: 237 NKRPEQLSVQEFINLTN 253 >gi|319940004|ref|ZP_08014358.1| ribosomal RNA small subunit methyltransferase A [Streptococcus anginosus 1_2_62CV] gi|319810718|gb|EFW07045.1| ribosomal RNA small subunit methyltransferase A [Streptococcus anginosus 1_2_62CV] Length = 291 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 151/283 (53%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D++ PIL D N + ++ +D LK D + +F N S PI+++ANLP Sbjct: 69 AEVMTFEIDERLVPILADTLRDFDN-VCVVNEDILKSDLQVRIKEFANPSLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ Q+EV +RI+AQ NS YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNSKSYGNLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRRKTLWNNLTSY 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E+ L A + ++R E L++++F R+ + L D Sbjct: 245 FGKSNEVKTKLESALDNAELSPSVRGEALNLQEFARLADSLYD 287 >gi|187933536|ref|YP_001884370.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund 17B] gi|187721689|gb|ACD22910.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund 17B] Length = 283 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 12/271 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y K +GQNFLLD ++L I + + + +IEIG G G LT LL A Sbjct: 9 KELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQ-KA 67 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 + V IE D PIL+ ++ ++ E+I +DALKVDF + ++++ANLPY + Sbjct: 68 KMVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYVT 126 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + + +ESLT++ QKEV ERI A+ N YG LSVL + ++ + Sbjct: 127 TPIIVKLLKENHK---FESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRKV 183 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG--G 246 SP F P PKV S VI NP + L I + F RRKTL + K +G Sbjct: 184 SPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLSK 243 Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITN 274 E+L I+ RAE LSIE+F + + Sbjct: 244 EDLQKAFDSCNIDPKRRAETLSIEEFAALAD 274 >gi|222528417|ref|YP_002572299.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM 6725] gi|222455264|gb|ACM59526.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM 6725] Length = 291 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 150/270 (55%), Gaps = 13/270 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L ++L Y + P K +GQNFL+D N+++KI S + +G VIEIGAGPG LT + L Sbjct: 18 ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQT-EGKEVIEIGAGPGTLT-VYLAK 75 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV+ +E D++ +LKD+ PN ++I+ D L+++ + N + + ++ NLPY Sbjct: 76 TAQKVVAVEIDKKILNVLKDVCQNLPN-VQIVNSDFLELNVKNLTN-GNKVYVVGNLPYY 133 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + +++LF E T++ QKEV +R+ A+ + YG L+V + + F Sbjct: 134 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 190 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245 +S +VF+P P+V S V+ + + KI F RRKT+ +L + Sbjct: 191 YVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNALSNQLDIA 250 Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272 + L + AG++ NLRAE+LS++D+ R+ Sbjct: 251 KDELKKIILMAGLDENLRAEDLSLDDYIRL 280 >gi|157149731|ref|YP_001449514.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis substr. CH1] gi|189028823|sp|A8AUQ4|RSMA_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157074525|gb|ABV09208.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis substr. CH1] Length = 290 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D N + ++ D LKVD ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+T+ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPAVEVQDEKFFFKVTKASFVHRRKTLWNNLTSY 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G EN L +A + N+R E L + F R+++ L Sbjct: 245 FGKSEEVKEKLENALAKANLVANVRGEALDLVAFARLSDAL 285 >gi|297543652|ref|YP_003675954.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841427|gb|ADH59943.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 273 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 146/267 (54%), Gaps = 16/267 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNF+ D NIL KI +SG + V+EIG G G LT+ L +KVI E D++ Sbjct: 9 KKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAK-RVKKVISFEIDRE 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWI 138 + + K+ + + N + II +D +K D K N P +++ANLPY I + ++ + Sbjct: 68 LYAVAKEKLNIYDNVI-IINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPIIMMLL 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 F + +T+L QKEV ERI A + YG L+V ++ K M+F++ P VF P Sbjct: 127 DCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTVFVPP 182 Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGI 255 PKV S+++ +P+ E + + AFG+RRK L +LK LG + ++ +A Sbjct: 183 PKVDSSLVKLEILDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIIDKAFT 242 Query: 256 ETNL----RAENLSIEDFCRITNILTD 278 +NL R E LSIE+F + N++ D Sbjct: 243 LSNLSPQRRGETLSIEEFAVLANVIYD 269 >gi|4929619|gb|AAD34070.1|AF151833_1 CGI-75 protein [Homo sapiens] Length = 346 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ ++ + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLLRLQAANELSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L+ L E LL A I+ LR LSI F + ++ Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306 >gi|312867557|ref|ZP_07727765.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405] gi|311096963|gb|EFQ55199.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405] Length = 291 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 146/279 (52%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D + N + ++ D LKVD ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLREFDN-VTVVNQDILKVDLNQYIAEFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243 F + VF P+P V S ++ + P + +++ +F RRKTL +L R Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRRKTLWNNLTSR 244 Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E + AG++ ++R E LS+EDF R+ + Sbjct: 245 FGKTEEVKAKLEAGIQAAGLKPSVRGEALSLEDFARLAD 283 >gi|205372007|ref|ZP_03224825.1| dimethyladenosine transferase [Bacillus coahuilensis m4-4] Length = 294 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 28/285 (9%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL+D NIL+ I E++G +E+G G G LT+ L A Sbjct: 11 KEILQKHGFSFKKSLGQNFLIDPNILRNITEAAGLTKEFGAVEVGPGIGALTEHL-ARSA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E DQ+ PIL+D S + N +EII D LK D E F+ P+ ++ANLP Sbjct: 70 KKVVSFEIDQRLVPILEDTLSPYDN-VEIILQDFLKADVESVLREQFSPDDPLMLVANLP 128 Query: 127 YNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 Y I T R+L + D + ++ QKEV +RI+A+ + YG LS+ + T Sbjct: 129 YYITTPIIMRVLLERLPID-------RIVVMLQKEVADRISAKPGTKEYGSLSIAIQYYT 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 +A + + VF P P V S VI PI + +T+ +F +RRKT+ + Sbjct: 182 EAETVMIVPKTVFMPQPNVDSAVIRLTKRKEPIARVEDEDFFFTVTRASFAQRRKTILNN 241 Query: 241 LKR--LGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276 L + G+N L G++ R E LSIE+F ++N L Sbjct: 242 LSSQLVEGKNKKDLLVQCLESVGVDPTRRGETLSIEEFAELSNAL 286 >gi|329903504|ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] gi|327548327|gb|EGF33015.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] Length = 259 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 139/260 (53%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + +K GQNFL D +L+ I ++ ++EIG G G +T++LL ++ V+E Sbjct: 2 KHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRLLLDD-LDQLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136 D+ +++ + P +L I DAL+ DF +R++ NLPYNI + LLF+ Sbjct: 61 LDRDL--VVRLQKTFDPKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 S + + + QKEV ER+ A YGRLSV+ WR ++ F + P F Sbjct: 119 LAS---FTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ IP +P+PC ++L+ + +AF RRK LR L + EN L AG++ Sbjct: 176 PPPRVESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDAGVD 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 LR E +S+E + + N L Sbjct: 236 PTLRPETISLEQYVGLANRL 255 >gi|260589447|ref|ZP_05855360.1| dimethyladenosine transferase [Blautia hansenii DSM 20583] gi|331084461|ref|ZP_08333563.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260540192|gb|EEX20761.1| dimethyladenosine transferase [Blautia hansenii DSM 20583] gi|330401324|gb|EGG80911.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 289 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 143/275 (52%), Gaps = 18/275 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y + +K GQNFL+D ++L KI ++ V+EIG G G +TQ L AR+ Sbjct: 15 VLQKYDFVFQKKFGQNFLIDTHVLDKIISAAEITKEDFVLEIGPGIGTMTQ-YLACAARE 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 V+ +E D+ PIL+D + N + ++ +D LKVD +K N PI+++ANLPY I Sbjct: 74 VVAVEIDKALIPILEDTLQDYSN-VTVLNEDILKVDIKKLADEHNNGKPIKVVANLPYYI 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ D ES+T++ QKEV +R+ + YG LS+ + + ++ + Sbjct: 133 TTPIIMGLFEGDVP---IESITVMVQKEVADRMQVGPGTKEYGALSLAVQYYAEPYIVAN 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR---- 243 + P+ F P PKV S VI H P ++ + +I + +F +RRKTL L Sbjct: 190 VPPNCFMPRPKVGSAVIRLTKHAEPPVEVFDTKLMFRIIRASFNQRRKTLANGLNNSPEL 249 Query: 244 -LGGENL---LHQAGIETNLRAENLSIEDFCRITN 274 G E + + G +R E L++E+F +TN Sbjct: 250 SFGKEEIQRAIKACGFPEGIRGEALTLEEFAALTN 284 >gi|218291058|ref|ZP_03495090.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius LAA1] gi|218239012|gb|EED06218.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius LAA1] Length = 284 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 146/280 (52%), Gaps = 17/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +K +L + +I KK GQNFL+D +L I + V+E+G G G LT L Sbjct: 6 AREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVEPDARTVVLEVGPGLGALTAALA 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII-- 122 A++V+ IEKD+ P+L ++ + H N E++ +D LKVD + R++ Sbjct: 66 ER-AKRVVAIEKDESLRPVLDEVLAPHGN-AEVLYEDCLKVDLRALLAPRLDEGDRLVFA 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +LF + +D P ++ ++ QKEV +R+ A+ YG LS+ +R Sbjct: 124 ANLPYYVTTPILFQVLESDL--PVSHAVVMV-QKEVADRMVARPGGKDYGVLSIGVQYRG 180 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS 240 + +F++ P F P P V S V+ P + +L ++ + AFG RRKTL + Sbjct: 181 EVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPALRAADEAALFRVVRAAFGTRRKTLENA 240 Query: 241 LKRLGG--ENLLHQ----AGIETNLRAENLSIEDFCRITN 274 L G + ++ Q AGI+ RAE LS+ DF R+T Sbjct: 241 LAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLTE 280 >gi|322390323|ref|ZP_08063851.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 903] gi|321142971|gb|EFX38421.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D N + ++ D LKVD ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243 F + VF P+P V S ++ + P + +++ +F RRKTL +L R Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRRKTLWNNLTSR 244 Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E + AG++ ++R E LS+EDF R+ + Sbjct: 245 FGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLAD 283 >gi|319897933|ref|YP_004136130.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3031] gi|317433439|emb|CBY81821.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3031] Length = 287 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + L + V+E D+ L+ HP +L +I+ DA++ DF E Sbjct: 53 EPVAEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|332365863|gb|EGJ43620.1| dimethyladenosine transferase [Streptococcus sanguinis SK355] Length = 290 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSYFGKSEETKGKLSAALERADLSPSVRGEALSLEEFARLADAL 285 >gi|188588306|ref|YP_001919554.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska E43] gi|188498587|gb|ACD51723.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska E43] Length = 283 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 98/275 (35%), Positives = 143/275 (52%), Gaps = 12/275 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y K +GQNFLLD ++L I + + +IEIG G G LT LL A Sbjct: 9 KELVKKYNFRFSKSLGQNFLLDESVLNDIVCGAEVNENDFIIEIGPGVGTLTAKLLQ-KA 67 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V IE D PIL+ ++ ++ E+I +DALKVDF + ++++ANLPY + Sbjct: 68 KRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYVT 126 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + + +ESLT++ QKEV ERI A+ N YG LSVL + ++ + Sbjct: 127 TPIIVKLLKENHK---FESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRKV 183 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG--G 246 SP F P PKV S VI NP + L I + F RRKTL + K +G Sbjct: 184 SPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLSK 243 Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 E+L I+ RAE LSIE+F + + + D Sbjct: 244 EDLQKAFDSCNIDPKRRAETLSIEEFAVLADSIHD 278 >gi|158259991|dbj|BAF82173.1| unnamed protein product [Homo sapiens] Length = 346 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II LP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGKLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L+ L E LL A I+ LR LSI F + ++ Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306 >gi|295692081|ref|YP_003600691.1| dimethyladenosine transferase [Lactobacillus crispatus ST1] gi|295030187|emb|CBL49666.1| Dimethyladenosine transferase [Lactobacillus crispatus ST1] Length = 294 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 151/284 (53%), Gaps = 24/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D + I E++G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL K I Q +R +I+ D LK +F++ FF+ + PI+ Sbjct: 74 -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKILLKDVLKANFKEDIGDFFDFTKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ S YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKDYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 K + + + F P PKV S+V+ P L P +E K + + F +RRKTL Sbjct: 190 EMKVKLALQVGRNSFMPRPKVDSSVVVLTP-LKEKP-AIEDRKHFIWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L + L+ + G++ +R E+L+IE F +I + Sbjct: 248 NNNLKSLLPDKTERDKLITELGVDPRIRPEDLTIEQFIKIAKFI 291 >gi|254787084|ref|YP_003074513.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Teredinibacter turnerae T7901] gi|237686969|gb|ACR14233.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Teredinibacter turnerae T7901] Length = 267 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 9/258 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D ++ I + +G ++EIG G G +T +LL + VIE D+ Sbjct: 12 KKRFGQNFLQDQGVINAIVRAVHPQEGDNLVEIGPGQGAITGLLLE-HCPNLQVIELDKD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L ++ +I Q DAL DF ++ P+RI+ NLPYNI T L+F+ +S Sbjct: 71 LIPGLLAQFAKF-RGFKIHQTDALNFDFSSLSSVEHPLRIVGNLPYNISTPLIFHLLSFR 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV ER+ A +YGRLS++ + + +F++ P F P+PKV Sbjct: 130 EQ---VRDMHFMLQKEVVERLAASPGEKNYGRLSIMAQYFCQVENLFEVPPECFIPAPKV 186 Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S ++ +PH +P ++ + + + AF +RRKTLR SLK + I+ Sbjct: 187 DSAIVRLVPH-KELPVKAHNMARFETLVKTAFAQRRKTLRNSLKSFEIDFASIDVKIDLA 245 Query: 259 LRAENLSIEDFCRITNIL 276 RAENLS+E + ++N L Sbjct: 246 QRAENLSLEQYVNLSNAL 263 >gi|22537918|ref|NP_688769.1| dimethyladenosine transferase [Streptococcus agalactiae 2603V/R] gi|76798247|ref|ZP_00780496.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21] gi|33516934|sp|Q8DXR8|RSMA_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|22534816|gb|AAN00642.1|AE014272_13 dimethyladenosine transferase [Streptococcus agalactiae 2603V/R] gi|76586400|gb|EAO62909.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21] Length = 290 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D ++ N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMIQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ AF RRKTL +L Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF + + L + Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|325695462|gb|EGD37362.1| dimethyladenosine transferase [Streptococcus sanguinis SK150] Length = 290 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 155/291 (53%), Gaps = 23/291 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SATEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESRIPFSE-FVVMMQREVADRISAQPNTKSYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRR 234 + A + F + VF P+P V S ++ + P P +++ K K+++ +F RR Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRNQP-PVEVQNEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 KTL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSHFGKSEETKSKLTAALERADLSPSVRGEALSLEEFARLADAL 285 >gi|76787342|ref|YP_330398.1| dimethyladenosine transferase [Streptococcus agalactiae A909] gi|77406268|ref|ZP_00783335.1| dimethyladenosine transferase [Streptococcus agalactiae H36B] gi|119365850|sp|Q3JZA5|RSMA_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|76562399|gb|ABA44983.1| dimethyladenosine transferase [Streptococcus agalactiae A909] gi|77175121|gb|EAO77923.1| dimethyladenosine transferase [Streptococcus agalactiae H36B] Length = 290 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTE-FLAENA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D ++ N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ AF RRKTL +L Sbjct: 185 SFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF + + L + Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|302873237|ref|YP_003841870.1| dimethyladenosine transferase [Clostridium cellulovorans 743B] gi|307688596|ref|ZP_07631042.1| dimethyladenosine transferase [Clostridium cellulovorans 743B] gi|302576094|gb|ADL50106.1| dimethyladenosine transferase [Clostridium cellulovorans 743B] Length = 282 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/277 (35%), Positives = 147/277 (53%), Gaps = 12/277 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++S K I+ Y K +GQNFL D ++L I + + VIEIG G G LT+ LL Sbjct: 3 NNSTKDIVLKYNFKFTKSLGQNFLTDDSVLNDIVNGAEVNENDVVIEIGPGVGTLTKELL 62 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A+KVI IE D PIL++ + N +I DA KVDF + ++I+ANLP Sbjct: 63 G-KAKKVIAIEVDSSLIPILQEELKEFDN-FTLIHKDATKVDFNELIEGEDTVKIVANLP 120 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + ++ + S+T++ QKEV +RI A +S YG L++L + + Sbjct: 121 YYVTTPIITDLLNKKYN---FTSITVMIQKEVADRINANPSSKEYGALTLLVQYYCDTKI 177 Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + + P F P PKV STVI +P + E +I +++F RRKTL +K L Sbjct: 178 VRVVPPSCFIPQPKVDSTVIRLDKLPAPRAVVEDEELFFRIIRDSFNMRRKTLWNGMKGL 237 Query: 245 GGENLLHQ-----AGIETNLRAENLSIEDFCRITNIL 276 G E L + A I+ R E LSIE+F +++N + Sbjct: 238 GLEKELLEKAFADADIDPKRRGETLSIEEFAKLSNCV 274 >gi|161506815|ref|YP_001576769.1| dimethyladenosine transferase [Lactobacillus helveticus DPC 4571] gi|172048354|sp|A8YX55|RSMA_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160347804|gb|ABX26478.1| Dimethyladenosine transferase [Lactobacillus helveticus DPC 4571] Length = 294 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 24/281 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QVIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKDI------SSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL++ + +R +++ D LK +F++ FF++S PI+ Sbjct: 74 -KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + +++ + F P PKV S+V+ P N +E+ K + + F +RRKTL Sbjct: 190 EMDVKVALEVNHNSFMPRPKVDSSVVVLTPLKN--KPEIENRKHFVWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L E L+ + G++ +R ENL+IE F I Sbjct: 248 NNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIA 288 >gi|308066864|ref|YP_003868469.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681] gi|305856143|gb|ADM67931.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681] Length = 294 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 19/282 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ + KK +GQNFL+D NIL KI ++G + +EIG G G LT+ L A Sbjct: 14 KDIIQRHGFSFKKSLGQNFLIDQNILNKIVNAAGLDETKGALEIGPGIGALTEKLAQ-SA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126 + V +E DQ+ PIL+++ + + +++ D LK+D + F S + ++ANLP Sbjct: 73 KAVTAVEIDQRLLPILEEVLAPY-EHVKVRHGDVLKLDLREVFAADFADVSKVSVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + D P E++ ++ QKEV ER+ A + YG LS+ + ++ + Sbjct: 132 YYVTTPILMRLLE-DKLP--LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYSEPEL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLK-- 242 + + VF P P V S VI + P+ E ++ AF +RRKT+ +LK Sbjct: 189 VCIVPNTVFIPQPNVESAVIRLRVREAPPVEVVDEKHFFEVVHAAFAQRRKTISNNLKSR 248 Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R E LL QAGIE + R E LSIE+F R++ +L + Sbjct: 249 FFTKENRDTLEPLLQQAGIEPSRRGETLSIEEFARLSAVLLE 290 >gi|329961933|ref|ZP_08299946.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057] gi|328531156|gb|EGF58006.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057] Length = 264 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + G+ V+E+G G G LTQ L+ R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDACPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEVDF 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + ++ II+DD LK++ ++ F+ +P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPELEDK--IIEDDFLKMNLQRLFD-GNPFVLTGNYPYNISSQIFFKMLEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F + HVF P PK Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K++ + F +RRKTLR S+K + G++ I N Sbjct: 179 VKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+++F +TN Sbjct: 239 RPEQLSVQEFIDLTN 253 >gi|300853385|ref|YP_003778369.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528] gi|300433500|gb|ADK13267.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528] Length = 280 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 152/284 (53%), Gaps = 16/284 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+ S + ++ Y K +GQNFL+D +L I S+ +IEIG G G LT Sbjct: 1 MNDLSTA--DVVKKYGFKFSKSLGQNFLIDNTVLDDIVNSADISKEDFIIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A KV IE D PILK+ N E+I DALK+DF K + ++I+ Sbjct: 59 RELLK-KAGKVCAIELDSDLIPILKEELKDFKN-FELIHKDALKIDFNKIIDDEKNVKIV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ ++ + +++LT++ QKEVGERI+++ N YG LS+L + Sbjct: 117 ANLPYYVTTPIITRLLNENYN---FKTLTIMIQKEVGERISSEPNCKQYGALSILVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239 ++ +SP F P PKV S VI + L+ ++ K K+ + +F RRKTL Sbjct: 174 DVEVIRKVSPLSFIPRPKVESIVIK-LTKLDEPRVKVKDKKLFFKVVRCSFNMRRKTLWN 232 Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 ++K L E +A I+ R E LSIE+F R+++ + D Sbjct: 233 AVKTLKVPKEDMEAAFKKAEIDEKRRGETLSIEEFGRLSDCIYD 276 >gi|119474855|ref|ZP_01615208.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2143] gi|119451058|gb|EAW32291.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2143] Length = 267 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 130/255 (50%), Gaps = 7/255 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ +IA + + D ++EIG G G LT +L G ++ IE D+ Sbjct: 12 RKRFGQNFLQDQGIIHRIARAVHATDKDHIVEIGPGQGALTTDILA-GGCQLDAIELDRD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL+ S+ P R + Q DAL DF +R++ NLPYNI T L+F + Sbjct: 71 LIPILQQQFSEQP-RFHLHQGDALTFDFSSLVKGEEKLRVVGNLPYNISTPLIFRLLDQH 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + Q EV R+ A S YGRLS++ + +F++ P F P PKV Sbjct: 130 EM---IQDMHFMLQLEVVNRLAASPGSKSYGRLSIMAQYYCDIHSLFEVPPEAFSPRPKV 186 Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ P+ P +++L+ + + F +RRKTLR SLK + + I + Sbjct: 187 QSAIVRLTPYKQPPHPAKNIKTLQALLRTCFNQRRKTLRNSLKNDLSSDQMEALDINPSA 246 Query: 260 RAENLSIEDFCRITN 274 R E LS+E F ++N Sbjct: 247 RPETLSLEQFVNMSN 261 >gi|332288954|ref|YP_004419806.1| dimethyladenosine transferase [Gallibacterium anatis UMN179] gi|330431850|gb|AEC16909.1| dimethyladenosine transferase [Gallibacterium anatis UMN179] Length = 282 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 149/287 (51%), Gaps = 22/287 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K+H L H +K GQNFL D I++ I + +IEIG G G LT Sbjct: 1 MNSKTH-----LGH---TARKRFGQNFLHDDQIIQSIVAAINPQANDFLIEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-P 118 + + + VIE D+ L+ HP +L +I+ D ++ DF++ + P Sbjct: 53 EPVAE-QIEHLTVIELDRDLAERLR----HHPFLHQKLTVIEQDVMRFDFQQLAQQAEKP 107 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +RI NLPYNI T L+F+ + + + + QKEV R+ A NS YGRL+++ Sbjct: 108 LRIFGNLPYNISTPLMFHLFQ---YHDVIQDMHFMLQKEVVNRLCAGPNSKAYGRLTIMA 164 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKT 236 + + + ++ P F P+PKV S V+ +PH + P P L L ++ +AF +RRKT Sbjct: 165 QYFCQVIPVLEVPPSAFKPAPKVDSAVVRLVPHKVLPYPVKDLYWLNRVCTQAFNQRRKT 224 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 LR SL L L + I+ RAENL+I D+ R+ N L DN +A Sbjct: 225 LRNSLMDLFTAEQLVELEIKLTDRAENLTIADYARLANWLADNPPLA 271 >gi|319654955|ref|ZP_08009029.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2] gi|317393380|gb|EFV74144.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2] Length = 292 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL++I + + + IEIG G G LT+ L + Sbjct: 12 RAILDKYGFSFKKSLGQNFLIDTNILRRIVDHADLSEESGAIEIGPGIGALTEQ-LARRS 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV+ E DQ+ PIL++ S +P+ + II +D LK D E+ F + I ++ANLP Sbjct: 71 KKVLAFEIDQRLLPILEETLSPYPH-VSIINEDVLKADVKTAIEQEFEGINDIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + D P + + QKEV +RI+A+ + YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-DKLP--IRGIVCMLQKEVADRISARPGTKEYGSLSIAVQYYTEAET 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + VF P P V S VI P + ES K+T+ +F +RRKTL +L Sbjct: 187 AMIVPKTVFVPQPNVDSAVIKLTKRKEPAVAVKSESFFFKVTKASFAQRRKTLLNNLTSQ 246 Query: 245 --GGE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 GG+ + L QA +E R E LSIE+F R+++ L Sbjct: 247 LPGGKQKKEHILSALEQANVEPGRRGETLSIEEFARLSDAL 287 >gi|169642197|gb|AAI60475.1| tfb1m protein [Xenopus (Silurana) tropicalis] Length = 346 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 23/296 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ + + +K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119 G +++V+EKD +F P LK ++ +++I+ D L ++ F ++ P + Sbjct: 77 GVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ AD PF +TL FQKEV ER+TA +S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + F I F P P+V V+HF P + P I + ++K+ + F R Sbjct: 197 SIMAQYLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVFQFR 256 Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RK + L E +L A ++ LR L++ F ++ N+ + D Sbjct: 257 RKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312 >gi|291533505|emb|CBL06618.1| dimethyladenosine transferase [Megamonas hypermegale ART12/1] Length = 287 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 151/283 (53%), Gaps = 14/283 (4%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ NK + + IL + I K +GQNFL+D NI++ I +++ + V+EIG G G L Sbjct: 5 TIANKKVT-RYILQRFGIHMSKRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTL 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 TQ L GA +V +E D++ +L + N + +IQ D LKV+ + P ++ Sbjct: 64 TQALAETGA-EVTCVELDKRLPEVLAHTLDAYDN-VRVIQGDILKVNIPEIMG-DKPFKV 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + + P + + ++ QKEV ER+ AQ YG LSV + Sbjct: 121 VANLPYYITTPIIMALL--EKHLPITD-IVVMVQKEVAERMAAQPGGKTYGALSVAVQYY 177 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQ 239 T + + P F P P+V S V++ P ++ ++ + AFG+RRKTL Sbjct: 178 TVPEIALYVPPRSFMPPPEVDSVVVNCKVRQTPAVELIDEKMFFRVVKAAFGQRRKTLNN 237 Query: 240 SLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK +G + ++L +AGIE R E L++E+F I NIL Sbjct: 238 ALKSMGVDKNIIADVLDKAGIEATRRGETLTMEEFGAIANILA 280 >gi|77409014|ref|ZP_00785733.1| dimethyladenosine transferase [Streptococcus agalactiae COH1] gi|77172355|gb|EAO75505.1| dimethyladenosine transferase [Streptococcus agalactiae COH1] Length = 290 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D ++ N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMIQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ AF RRKTL +L Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVCRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF + + L + Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|150387987|ref|YP_001318036.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF] gi|166987687|sp|A6TJK9|RSMA_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149947849|gb|ABR46377.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF] Length = 287 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 147/282 (52%), Gaps = 17/282 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ YK K +GQNFL+D NIL+ I + + VIEIG G G LTQ + A Sbjct: 11 KAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFIAE-KA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPY 127 KV+ IE D+ PILK + + N +E+I D LKVD + P+++IANLPY Sbjct: 70 HKVVAIEIDRNLIPILKHTLADYQN-VEVINQDVLKVDLHQLIADKFEGKPVKVIANLPY 128 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + T ++ ++ + P +SL ++ QKEV R+ A + YG LS+ + ++ Sbjct: 129 YVTTPIVMRFLE-EKVP--VDSLVIMIQKEVAVRMQAGPGTKDYGALSIAVQYYCNPEIL 185 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRKTLRQSLK--- 242 + P VF P PKV S VI + P + + L + ++AFGKRRKTL +L Sbjct: 186 LKVPPSVFIPQPKVESIVIKLQVYPEPKVKVERDDLMFALVKDAFGKRRKTLLNALSSGL 245 Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L E + L A I+ N R E L+IE++ +T + Q Sbjct: 246 LQLSKEIVRESLEAANIDENRRGETLTIEEYATLTKEVAARQ 287 >gi|46906420|ref|YP_012809.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b str. F2365] gi|226222817|ref|YP_002756924.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria monocytogenes Clip81459] gi|254853694|ref|ZP_05243042.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503] gi|254933027|ref|ZP_05266386.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262] gi|254992659|ref|ZP_05274849.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-064] gi|255519705|ref|ZP_05386942.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-175] gi|300764931|ref|ZP_07074920.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017] gi|62900545|sp|Q724M5|RSMA_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|259494253|sp|C1KYC1|RSMA_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|46879684|gb|AAT02986.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b str. F2365] gi|225875279|emb|CAS03976.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607073|gb|EEW19681.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503] gi|293584586|gb|EFF96618.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262] gi|300514418|gb|EFK41476.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017] gi|328469720|gb|EGF40642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Listeria monocytogenes 220] gi|332310597|gb|EGJ23692.1| Ribosomal RNA small subunit methyltransferase A [Listeria monocytogenes str. Scott A] Length = 295 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E + L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|47092871|ref|ZP_00230654.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b H7858] gi|254825899|ref|ZP_05230900.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194] gi|47018775|gb|EAL09525.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b H7858] gi|293595137|gb|EFG02898.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194] gi|328468506|gb|EGF39512.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Listeria monocytogenes 1816] Length = 295 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 151/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL 241 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 242 K------RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 + ++L L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKDDLVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|73663572|ref|YP_302353.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|119365849|sp|Q49V02|RSMA_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72496087|dbj|BAE19408.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 296 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L+ Y KK +GQNFL+D+NI+ I ++S + +IE+G G G+LT+ L A Sbjct: 13 KALLNQYGFNFKKSLGQNFLIDVNIIHNIIDASDIDEQTGIIEVGPGMGSLTEQLAK-SA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E DQ+ P+LKD + N + +I +D LK D + I ++ANLP Sbjct: 72 KKVMAFEIDQRLIPVLKDTMRPYDN-VTVINEDILKADIAHYITEHLTDCEKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + P + ++ QKEVGER+ AQ + YG LS++ + T+ + Sbjct: 131 YYITTPILLNLMQQ-KLP--IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR---QSL 241 + + VF P P V S V+ + PI + K K+T+ AF +RRKT+ QSL Sbjct: 188 VLTVPKSVFLPPPNVDSIVVKLMKRPTPIVDIDDENKFFKMTKAAFSQRRKTINNNYQSL 247 Query: 242 KRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G N L AGI+ R E LSI++F + N L Sbjct: 248 FVNGKVNKEKILEWLEAAGIDPRRRGETLSIKEFANLYNEL 288 >gi|332877578|ref|ZP_08445322.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684427|gb|EGJ57280.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 258 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 103/254 (40%), Positives = 140/254 (55%), Gaps = 12/254 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL DLNI +KIA++ + V+EIGAG G LTQ LL +V V+E D++ Sbjct: 7 KKHLGQHFLKDLNIAQKIADTLSLANYKKVVEIGAGMGVLTQFLLKKDT-EVYVVEIDKE 65 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + +P R +II DD LK D F + P II N PYNI T+++F + Sbjct: 66 SVAYLE---AHYPELRGKIIADDFLKYDIAGF--LREPFAIIGNFPYNISTQIVFKLLEL 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + P + +FQKEV ERI ++ S YG LSVL +AT +F +S VF P PK Sbjct: 121 RDYVP---EFSGMFQKEVAERICEREGSKTYGILSVLVQAFYEATYLFTVSEGVFNPPPK 177 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S V+ + + C E+L I + AF +RRKTLR SLK L L I + Sbjct: 178 VKSGVLRLVRKSDYHLDCDEALFFTIVKTAFNQRRKTLRNSLKPLLTNEFLKNNSI-FDK 236 Query: 260 RAENLSIEDFCRIT 273 R E L +DF IT Sbjct: 237 RPEQLPWQDFVFIT 250 >gi|323465762|gb|ADX69449.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus helveticus H10] Length = 294 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 151/281 (53%), Gaps = 24/281 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 QAIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPILKDI------SSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL++ + +R +++ D LK +F++ FF++S PI+ Sbjct: 74 -KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + ++ + F P PKV S+V+ P N +E+ K + + F +RRKTL Sbjct: 190 EMDVKVALEVKHNSFMPRPKVDSSVVVLTPLKN--KPEIENRKHFVWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L E L+ + G++ +R ENL+IE F I Sbjct: 248 NNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIA 288 >gi|293391018|ref|ZP_06635352.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951552|gb|EFE01671.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 287 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 145/288 (50%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D N+++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + + V+E D+ L+ HP +L +I+ DA++ DF E+ Sbjct: 53 EPVAE-QVEHLTVLELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFSSLYEQERLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFH---YHHIIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR + L L GI N RAENLSI D+ R+ N L DN Sbjct: 225 QRRKTLRNAFSGLFSAGNLTALGINLNARAENLSIADYARLANWLADN 272 >gi|255025830|ref|ZP_05297816.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-003] Length = 295 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E + L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKAELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|327438098|dbj|BAK14463.1| dimethyladenosine transferase [Solibacillus silvestris StLB046] Length = 295 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL+ I + + IE+G G G LT+ L A Sbjct: 12 KEILEKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHL-AREA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126 +KV+ E DQ+ P+L+D S + N ++I+ D LK D + P I ++ANLP Sbjct: 71 KKVVSFEIDQRLLPVLEDTLSPYDN-VKIVHSDILKADVAQVIEEEMPGIEDIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L ++ D P ++ QKEV +RITA+ + YG LS+ + A + Sbjct: 130 YYVTTPILMKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKAYGSLSIAIQFYVTAEI 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 + VF P P V S VI I H NP ++ L ++++ +F +RRKT+ +L+ Sbjct: 187 AMVVPKTVFMPQPNVDSAVIRLIKHENPPVKVIDEDFLFEVSRASFAQRRKTILNNLQNG 246 Query: 245 ---GGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G +N L +AGIE + R E LSI++F ++ + L Sbjct: 247 LVNGKQNKELILKALEEAGIEPSRRGETLSIQEFGKLADCL 287 >gi|332358479|gb|EGJ36304.1| dimethyladenosine transferase [Streptococcus sanguinis SK49] Length = 290 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADAL 285 >gi|167830454|ref|NP_001108082.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos taurus] gi|124053396|sp|Q2TBQ0|TFB1M_BOVIN RecName: Full=Mitochondrial dimethyladenosine transferase 1; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|296483884|gb|DAA25999.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos taurus] Length = 341 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 G +++V+EKD +F P L+ +S P +L I+ D L E+ F S P + Sbjct: 77 GVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ + PF T L FQKEV ER+TA S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + + I F P P+V S V+HF P P I + ++K+ Q AF R Sbjct: 197 SIMAQYLCDVQHILTIPGQAFVPKPEVDSGVVHFTPLTRPRIKQPFKLVEKVVQNAFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L E LL A ++ LR L++ F + ++ Sbjct: 257 RKYCHRGLGMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDV 306 >gi|312865682|ref|ZP_07725906.1| dimethyladenosine transferase [Streptococcus downei F0415] gi|311098803|gb|EFQ57023.1| dimethyladenosine transferase [Streptococcus downei F0415] Length = 284 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 3 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTTEIDQNVNVIEIGPGIGALTEFLAEQAA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N + +I +D LK D + F N + PI+++ANLP Sbjct: 63 -EVMTFEIDDRLIPILADTLRDFDN-VTVINEDILKSDLQTQIKNFANPNLPIKVVANLP 120 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV RI+A+ N+ YG LS+ + A + Sbjct: 121 YYITTPILMHLIESKI--PFAE-FVVMMQKEVANRISAEPNTKAYGSLSIAVQYYMSAKV 177 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243 F + VF P+P V S ++ P+ + + + +F RRKTL +L R Sbjct: 178 AFIVPRTVFVPAPNVDSAILKMTRRPAPLIAVQDEDFFFDVAKASFVHRRKTLWNNLTNR 237 Query: 244 LGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A ++ N+R E LSI+DF R+ + L D Sbjct: 238 FGKEEATKSKLQAALEMAELKPNIRGEALSIQDFGRLADALLD 280 >gi|149007460|ref|ZP_01831103.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74] gi|147761032|gb|EDK68001.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74] gi|332071962|gb|EGI82450.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545] Length = 290 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QA + ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQADLSPSVRGEALSLAEFAGLADAL 285 >gi|221106688|ref|XP_002161204.1| PREDICTED: similar to transcription factor B1, mitochondrial [Hydra magnipapillata] Length = 328 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 148/286 (51%), Gaps = 23/286 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + ++ Y + KK + QNF+LDLN+ KIA + D VIE+G+GPG+L++ LL G Sbjct: 16 ISDLMRLYGLRAKKQLSQNFILDLNVTDKIARKADVFD-CNVIEVGSGPGSLSRSLLNAG 74 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSP---------I 119 R + +E D++F P L+ + + I D LK D K N+ S I Sbjct: 75 LRHLYAVEIDKRFLPSLELLQDASDGHMSIYHADILKFDMVKPLKNVISAEWESDDLPNI 134 Query: 120 RIIANLPYNIGTRLLFNWISA-DTWPPFWE----SLTLLFQKEVGERITAQKNSPHYGRL 174 R++ NLP+++ L W+ A T + +TL+FQKEVG+ + A+ + RL Sbjct: 135 RLVGNLPFSVSIPLFLQWLEALSTRSGVFSFGRIPMTLVFQKEVGQNMVAEALNYDRSRL 194 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 +++ + +IS VF P PKV + ++HFIP P I ++++ + F KR Sbjct: 195 AIMAQNYCHVSRAMEISSSVFVPEPKVDAWLMHFIPLKKPAIDAPFNVVEQVVKAIFSKR 254 Query: 234 RKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRIT 273 RK ++ L+RL EN LL + ++TNLR L + DF IT Sbjct: 255 RKIIKTPLRRLFPENERLADELLDRIKLDTNLRPHQLELHDFNLIT 300 >gi|290892256|ref|ZP_06555251.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071] gi|290558082|gb|EFD91601.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071] Length = 295 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E + L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|256960062|ref|ZP_05564233.1| dimethyladenosine transferase [Enterococcus faecalis Merz96] gi|256950558|gb|EEU67190.1| dimethyladenosine transferase [Enterococcus faecalis Merz96] Length = 292 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 148/283 (52%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L + A Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ANLP Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131 Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T ++ +++ S D + ++ QKEV +RI A+ + YG LS+ + +A Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S +I P + K+T+ +F RRKTL +L Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G++ L +A I+ + R E LS+E+F R++N L Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNAL 289 >gi|309750045|gb|ADO80029.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae R2866] Length = 287 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 149/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117 + + L + V+E D+ L+ HP +L +I+ DA++ DF++ + + Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L + +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNLVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|116496022|ref|YP_807756.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus casei ATCC 334] gi|116106172|gb|ABJ71314.1| dimethyladenosine transferase [Lactobacillus casei ATCC 334] Length = 298 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 140/277 (50%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A + Sbjct: 16 ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 74 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128 V+ +E D + PIL + + +PN ++ +D LK D + F+ ++++ANLPY Sbjct: 75 VVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 133 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + + A P S+T++ Q+EV ER++A S YG LS+ F Sbjct: 134 ITTPILLHLLRAQ-LP--LHSMTVMMQREVAERLSATPGSKEYGSLSIAVQLVASVATAF 190 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246 +S H F P+P V S ++ P+ + S ++ + AF RRKTL +L L G Sbjct: 191 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 250 Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + L A I+ RAE LSI DF R+ L Sbjct: 251 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 287 >gi|218129242|ref|ZP_03458046.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697] gi|317475217|ref|ZP_07934484.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA] gi|217988620|gb|EEC54940.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697] gi|316908670|gb|EFV30357.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA] Length = 261 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 138/257 (53%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA + + + V+E+G G G LTQ LL G R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIANTVDACPELPVLEVGPGMGVLTQFLLPKG-RTVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLED--HIIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F + HVF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K++ + F +RRKTLR S+K + G++ + Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+++F +TN Sbjct: 237 NKRPEQLSVQEFIELTN 253 >gi|237809113|ref|YP_002893553.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187] gi|259494261|sp|C4L9L4|RSMA_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|237501374|gb|ACQ93967.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187] Length = 268 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 136/261 (52%), Gaps = 13/261 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D + I + ++EIG G G LT+ + K+ V+E D+ Sbjct: 13 RKRFGQNFLHDQYTIDSIVSAIAPRQNDVMVEIGPGLGALTEPVCD-QIDKLHVVELDRD 71 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ +HP ++L + + DA+K +F++ P+RI NLPYNI T L+F+ + Sbjct: 72 LAARLR----EHPRLKDKLIVHEADAMKFNFDELAQPGRPLRIFGNLPYNISTPLIFHLL 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV ER+ A NS YGRL+V+T + + + ++ PH F P+ Sbjct: 128 EKSQ---YITDMYFMLQKEVVERLAAGPNSKDYGRLTVMTQYYCQVMPVLEVGPHAFKPA 184 Query: 199 PKVTSTVIHFIP-HLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P P + L+++ QE FG+RRKT+R + + L + I Sbjct: 185 PKVNSAVVRLAPWKKRPYEALNIADLQRVCQEGFGQRRKTIRNTFRSFITAEQLEEIDIN 244 Query: 257 TNLRAENLSIEDFCRITNILT 277 NLR ENL++ F I N LT Sbjct: 245 PNLRPENLTLAQFVSIANWLT 265 >gi|15901808|ref|NP_346412.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4] gi|14973492|gb|AAK76052.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4] Length = 279 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 20/279 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A + Sbjct: 1 MLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA-Q 59 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128 V+ E D + PIL D N + ++ +D LKVD + F N PI+++ANLPY Sbjct: 60 VMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLPYY 118 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + F Sbjct: 119 ITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAF 175 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246 + VF P+P V S ++ + P + K+++ +F RRKTL +L G Sbjct: 176 IVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFG 235 Query: 247 EN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 + L QAG+ ++R E LS+ +F + + L Sbjct: 236 KTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 274 >gi|217965726|ref|YP_002351404.1| dimethyladenosine transferase [Listeria monocytogenes HCC23] gi|254807872|sp|B8DGN7|RSMA_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|217334996|gb|ACK40790.1| dimethyladenosine transferase [Listeria monocytogenes HCC23] gi|307569727|emb|CAR82906.1| dimethyladenosine transferase [Listeria monocytogenes L99] Length = 295 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAYSN-VQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E + L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|289433536|ref|YP_003463408.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169780|emb|CBH26316.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 295 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 148/286 (51%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241 A + F + VF P P V S VIH P+ + ++T+ +F +RRKTL +L Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDESFFFEVTRASFAQRRKTLWNNL 244 Query: 242 KRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|327462724|gb|EGF09046.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057] Length = 290 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRNFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFVVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L + + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSYFGKSEATKGKLTAALERTDLSPSVRGEALSLEEFARLADAL 285 >gi|324992524|gb|EGC24445.1| dimethyladenosine transferase [Streptococcus sanguinis SK405] gi|324995947|gb|EGC27858.1| dimethyladenosine transferase [Streptococcus sanguinis SK678] gi|327460748|gb|EGF07083.1| dimethyladenosine transferase [Streptococcus sanguinis SK1] gi|327472469|gb|EGF17900.1| dimethyladenosine transferase [Streptococcus sanguinis SK408] gi|328944611|gb|EGG38772.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087] Length = 290 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285 >gi|145640522|ref|ZP_01796106.1| dimethyladenosine transferase [Haemophilus influenzae R3021] gi|145275108|gb|EDK14970.1| dimethyladenosine transferase [Haemophilus influenzae 22.4-21] Length = 287 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + L + V+E D+ L+ HP +L +I+ DA++ DF E Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|160871590|ref|ZP_02061722.1| dimethyladenosine transferase [Rickettsiella grylli] gi|159120389|gb|EDP45727.1| dimethyladenosine transferase [Rickettsiella grylli] Length = 269 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 136/258 (52%), Gaps = 9/258 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL + I+ KI + ++IEIG G G LT+ L+ L +I IE D+ Sbjct: 8 RKRFGQHFLHERTIIDKIIHAIAPKKTDSMIEIGPGLGALTEQLVPL-VHYLIAIELDKN 66 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+L++ I+Q D L VDF I R++ NLPYNI T LLF+ I+ Sbjct: 67 LIPLLEE-KCVGLGEFMILQGDVLNVDFRTLTKIKCRWRVVGNLPYNISTPLLFHCINHV 125 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV +RI AQ YGRLSV+ + + +F++ P F P PKV Sbjct: 126 SN---IQDMHFMLQKEVADRINAQPGQSSYGRLSVMIQYYCQVEKLFNVKPGAFRPPPKV 182 Query: 202 TSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S VI IP+ +P +S +I + AF RRK LR +L E+ Q GI ++ Sbjct: 183 DSAVIRLIPY-RKLPHKAKSSLLFAEIVKNAFNHRRKMLRNNLSYCLQEHDFEQLGIRSS 241 Query: 259 LRAENLSIEDFCRITNIL 276 +R E L++ D+ ++ N + Sbjct: 242 VRPEQLAVNDYVKLANFV 259 >gi|312878167|ref|ZP_07738097.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus 6A] gi|311795057|gb|EFR11456.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus 6A] Length = 282 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 151/270 (55%), Gaps = 13/270 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L ++L Y + P K +GQNFL+D N+++KI S ++G V+EIGAGPG LT + L Sbjct: 9 ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFS-QVEGKEVVEIGAGPGTLT-VYLAK 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV +E D++ +LK++ Q + ++I+ D L+++ + N + + I+ NLPY Sbjct: 67 TAQKVFAVEIDKKILNVLKEVC-QVISNVQIVNSDFLELNVKDLTN-GNKVYIVGNLPYY 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + +++LF E T++ QKEV +R+ A+ + YG L+V + + F Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245 +S +VF+P P+V S V+ + ++ KI F RRKT+ +L + Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNALSNQLDIA 241 Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272 E L +H AG++ NLRAE+LS++D+ R+ Sbjct: 242 KEELKKIIHMAGLDENLRAEDLSLDDYIRL 271 >gi|16272493|ref|NP_438707.1| dimethyladenosine transferase [Haemophilus influenzae Rd KW20] gi|145628930|ref|ZP_01784730.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21] gi|260580996|ref|ZP_05848819.1| dimethyladenosine transferase [Haemophilus influenzae RdAW] gi|1170712|sp|P44749|RSMA_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|1573534|gb|AAC22207.1| dimethyladenosine transferase (ksgA) [Haemophilus influenzae Rd KW20] gi|144979400|gb|EDJ89086.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21] gi|260092355|gb|EEW76295.1| dimethyladenosine transferase [Haemophilus influenzae RdAW] Length = 287 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + L + V+E D+ L+ HP +L +I+ DA++ DF E Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|237749068|ref|ZP_04579548.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes OXCC13] gi|229380430|gb|EEO30521.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes OXCC13] Length = 256 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 141/261 (54%), Gaps = 9/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D ++L I + ++EIG G G +T+ LL + ++ VIE Sbjct: 2 KHIPRKRFGQNFLKDQSVLDDIVSAIAPKPTDHMLEIGPGMGAMTENLLPYLS-QMDVIE 60 Query: 78 KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLF 135 D+ LK + P ++L I Q DAL DF S + RI+ NLPYNI + LLF Sbjct: 61 LDRDLVVYLK---KRFPADKLTIHQGDALSFDFRTIGASSENKWRIVGNLPYNISSPLLF 117 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + ++ + E + Q+EV ER+ A+ + YGRLSV+ W+ ++F + P F Sbjct: 118 HLMNFSSC---IEDQHFMLQREVVERMVAEPGNKAYGRLSVMLQWQYDMELLFIVPPTAF 174 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S ++ IP P C +L+K +AF +RRK LR +L L E+ L + GI Sbjct: 175 DPMPRVDSAIVRMIPRETPEACSSVALEKTVTQAFSQRRKMLRNNLAPLFSESRLIELGI 234 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + R E+L++E F + N L Sbjct: 235 DPTRRPEDLTVEQFILLANHL 255 >gi|145637409|ref|ZP_01793068.1| dimethyladenosine transferase [Haemophilus influenzae PittHH] gi|145269355|gb|EDK09299.1| dimethyladenosine transferase [Haemophilus influenzae PittHH] Length = 287 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + L + V+E D+ L+ HP +L +I+ DA++ DF E Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|168484284|ref|ZP_02709236.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00] gi|172042507|gb|EDT50553.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00] gi|332199410|gb|EGJ13487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368] Length = 290 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + I+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLSIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|152999580|ref|YP_001365261.1| dimethyladenosine transferase [Shewanella baltica OS185] gi|160874199|ref|YP_001553515.1| dimethyladenosine transferase [Shewanella baltica OS195] gi|166221701|sp|A6WK59|RSMA_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028816|sp|A9L438|RSMA_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151364198|gb|ABS07198.1| dimethyladenosine transferase [Shewanella baltica OS185] gi|160859721|gb|ABX48255.1| dimethyladenosine transferase [Shewanella baltica OS195] gi|315266431|gb|ADT93284.1| dimethyladenosine transferase [Shewanella baltica OS678] Length = 268 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 27/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 + + + V+E D+ P+LKD +L I Q DAL+ DF + Sbjct: 53 EPVAE-AVDNLTVVELDRDLVERLHHHPVLKD-------KLTIHQGDALQFDFGQLSVPG 104 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234 + + + + ++ PH F P+PKV S V+ +P+ + P PC + L+ + AF RR Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRR 221 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR +LK + ++ Q GI+++ R E +S++ + + N++ D + Sbjct: 222 KTLRNNLKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267 >gi|296875726|ref|ZP_06899791.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 15912] gi|296433296|gb|EFH19078.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 15912] Length = 291 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D N + ++ D LKVD ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243 F + VF P+P V S ++ + P + +++ +F RRKTL +L R Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREKPAVTVKDEDFFFSVSKASFVHRRKTLWNNLTSR 244 Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E + AG++ ++R E LS+EDF R+ + Sbjct: 245 FGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLAD 283 >gi|291549844|emb|CBL26106.1| dimethyladenosine transferase [Ruminococcus torques L2-14] Length = 304 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 21/291 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ +L Y + +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 19 TLGNPQNTIE-VLQKYNFVFQKKFGQNFLIDTHVLDKIIAAAEITKDDFVLEIGPGIGTM 77 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L ARKV+ +E D+ PIL+D S + N +I +D LKVD K N P Sbjct: 78 TQ-YLACAARKVVAVEIDKALIPILEDTLSDYDN-ARVINNDVLKVDIAKLAEEENGGKP 135 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + P +S+T++ QKEV +R+ + YG LS+ Sbjct: 136 IKVVANLPYYITTPIIMGLF--ENHVPI-KSITVMVQKEVADRMQVGPGTKDYGALSLAV 192 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + K ++ ++ P+ F P PKV S VI + P P ++ K +I + +F +RRK Sbjct: 193 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYEEP-PVKVKDEKLMFRIIRASFNQRRK 251 Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL LK E + G ++R E L++E+F ++ + L D Sbjct: 252 TLANGLKNSAELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADFLYD 302 >gi|270158275|ref|ZP_06186932.1| dimethyladenosine transferase [Legionella longbeachae D-4968] gi|289163469|ref|YP_003453607.1| dimethyladenosine transferase (16S rRNA dimethylase) [Legionella longbeachae NSW150] gi|269990300|gb|EEZ96554.1| dimethyladenosine transferase [Legionella longbeachae D-4968] gi|288856642|emb|CBJ10453.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Legionella longbeachae NSW150] Length = 256 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 141/262 (53%), Gaps = 14/262 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 P+K GQNFL + +I+ +I + ++EIG G G LTQ LL L + I+ D Sbjct: 5 PRKRFGQNFLQNQHIINRIVHAINPQPQDNMLEIGPGLGALTQSLLRYLNHLTAVEIDTD 64 Query: 80 -QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 Q++ L I+ ++L +I DAL +D+ +F +R++ NLPYNI T LL + + Sbjct: 65 LQKYLTELSGIA----DKLHLIAADALTLDYNQF---GPNLRVVGNLPYNISTPLLIHLL 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + E + + QKEV ER+ AQ YGRL+V+ + +FD+ P F P Sbjct: 118 K---FTASIEDMHFMLQKEVVERMAAQPGCKAYGRLTVMLQYHCTVEHLFDVPPEAFDPK 174 Query: 199 PKVTSTVIHFIPH-LNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +PH ++P +E L+ + AF RRKTL +LK L + LH GI+ Sbjct: 175 PKVDSAVVRLVPHRISPFEQIAVERLEYLVAHAFAMRRKTLNNNLKGLITADQLHDLGID 234 Query: 257 TNLRAENLSIEDFCRITNILTD 278 + R E +SI ++ ++ +++ Sbjct: 235 GSRRPEQISISEYVQLAKFISN 256 >gi|239637479|ref|ZP_04678453.1| dimethyladenosine transferase [Staphylococcus warneri L37603] gi|239596924|gb|EEQ79447.1| dimethyladenosine transferase [Staphylococcus warneri L37603] Length = 296 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 146/277 (52%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ KI ++S + +IE+G G G+LT+ L A Sbjct: 13 RALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLAK-HA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANLP 126 +KV+ E D + P+LKD + + N + II +D LK D N I ++ANLP Sbjct: 72 KKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVNEHLKDCDKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ + YG LS++T + T+ + Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNNYQNF 247 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 E H +A I+ R E LSI+DF ++ Sbjct: 248 FKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQL 284 >gi|145638541|ref|ZP_01794150.1| dimethyladenosine transferase [Haemophilus influenzae PittII] gi|145272136|gb|EDK12044.1| dimethyladenosine transferase [Haemophilus influenzae PittII] Length = 287 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 149/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117 + + L + V+E D+ L+ HP +L +I+ DA++ DF++ + + Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ + N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYAHLANWLADN 272 >gi|50513341|pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase gi|50513342|pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/261 (35%), Positives = 136/261 (52%), Gaps = 18/261 (6%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFP 84 QNFL D ++ I + G ++EIG G LT+ +G R ++ VIE D+ Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLAA 57 Query: 85 ILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISA 140 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 58 RLQ----THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS- 112 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PK Sbjct: 113 --YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPK 170 Query: 201 VTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ Sbjct: 171 VDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPA 230 Query: 259 LRAENLSIEDFCRITNILTDN 279 +RAEN+S+ +C++ N L +N Sbjct: 231 MRAENISVAQYCQMANYLAEN 251 >gi|332365155|gb|EGJ42918.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059] Length = 290 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PVKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKSYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + KI++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKISKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285 >gi|217969878|ref|YP_002355112.1| dimethyladenosine transferase [Thauera sp. MZ1T] gi|217507205|gb|ACK54216.1| dimethyladenosine transferase [Thauera sp. MZ1T] Length = 272 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 142/271 (52%), Gaps = 23/271 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL D NI++KI + G ++EIG G G +T L+ LG V+ I++D Sbjct: 12 RKRFGQNFLSDPNIIRKIIDGIRPQPGELMVEIGPGLGAMTDPLIERLGHLHVVEIDRD- 70 Query: 81 QFFPILKDISSQH-PNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGTRLL 134 ++ + ++ P +L + + DALK DF + +RI+ NLPYNI T +L Sbjct: 71 ----LIARLHERYTPAQLTVHEGDALKFDFGSLCAGEEGGVGPRLRIVGNLPYNISTPIL 126 Query: 135 FNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F+ AD + +T + QKEV R+ A+ + YGRLSV+ +R + +FD+ P Sbjct: 127 FHLAGFADQV----KDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMGRLFDVPPG 182 Query: 194 VFFPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 F P+PKV S+++ P L L L +I AFG+RRKTLR +L+ + Sbjct: 183 AFRPAPKVMSSIVRMAPLPAEQLGARDEAL--LGRIVAAAFGQRRKTLRNTLREFIDDAG 240 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L GI+ LR E LS+E + I N + Sbjct: 241 LQALGIDPGLRGEKLSVEQYVAIANACAGRE 271 >gi|16802234|ref|NP_463719.1| dimethyladenosine transferase [Listeria monocytogenes EGD-e] gi|47096181|ref|ZP_00233780.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a F6854] gi|224500359|ref|ZP_03668708.1| dimethyladenosine transferase [Listeria monocytogenes Finland 1988] gi|224503492|ref|ZP_03671799.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-561] gi|254829279|ref|ZP_05233966.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165] gi|254832492|ref|ZP_05237147.1| dimethyladenosine transferase [Listeria monocytogenes 10403S] gi|254901027|ref|ZP_05260951.1| dimethyladenosine transferase [Listeria monocytogenes J0161] gi|254913905|ref|ZP_05263917.1| dimethyladenosine transferase dimethyltransferase [Listeria monocytogenes J2818] gi|254938304|ref|ZP_05270001.1| dimethyladenosine transferase [Listeria monocytogenes F6900] gi|255030001|ref|ZP_05301952.1| dimethyladenosine transferase [Listeria monocytogenes LO28] gi|27151582|sp|Q8YAE2|RSMA_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|16409545|emb|CAC98403.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria monocytogenes EGD-e] gi|47015429|gb|EAL06363.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a F6854] gi|258601690|gb|EEW15015.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165] gi|258610916|gb|EEW23524.1| dimethyladenosine transferase [Listeria monocytogenes F6900] gi|293591922|gb|EFG00257.1| dimethyladenosine transferase dimethyltransferase [Listeria monocytogenes J2818] Length = 295 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E + L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|328956557|ref|YP_004373943.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp. 17-4] gi|328672881|gb|AEB28927.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp. 17-4] Length = 297 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ Y KK +GQNF++D NIL I +S VIE+G G G LT+ L + Sbjct: 14 KEIMEKYGFSVKKSLGQNFIVDPNILNNIVAASNIDKNTNVIEVGPGIGALTEHL-ARAS 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 ++VI E D + P+L D S + N + I+ D LK++ +K ++ P+ ++ANLP Sbjct: 73 KEVIAFEIDNRLLPVLADTLSPYDN-VSIVHSDVLKINLQKTLPEMIDLDEPLVVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ P + LT++ QKEV ERITA S YG LS+ + +A + Sbjct: 132 YYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGSLSIAIQYYMEAEV 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLK-R 243 F + VF P P V S +I P +S + + AF +RRKTL +L R Sbjct: 189 AFIVPKTVFVPQPNVDSAIIKLTRRATPSVTVKNEKSFFALVRSAFVQRRKTLWNNLLIR 248 Query: 244 LGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E+ L A I+ R E LS+E+F R+++ + + Sbjct: 249 YGKEDSTREKLTQALEAASIDPKRRGETLSLEEFGRLSDAIDE 291 >gi|328675684|gb|AEB28359.1| Dimethyladenosine transferase [Francisella cf. novicida 3523] Length = 262 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/268 (37%), Positives = 141/268 (52%), Gaps = 13/268 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDMVVEIGPGLGALTRYLLC-TSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 IE D L + Q I D LK D N+S+ I++I NLPYNI + +L Sbjct: 61 IEFDASVIDTLI-ANCQKYGTPRIYNQDFLKFDISSLENLSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFNCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLL- 250 F+P PKV S ++ P N L++ ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNN--KALLKNYHFFEEIVKQSFAQRRKTLHNNLKYMLKERKID 234 Query: 251 -HQAGIETNLRAENLSIEDFCRITNILT 277 + ++TNLRAENLS+ DF + N L+ Sbjct: 235 PNTLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|226938959|ref|YP_002794030.1| dimethyladenosine transferase [Laribacter hongkongensis HLHK9] gi|254807871|sp|C1D9C2|RSMA_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226713883|gb|ACO73021.1| KsgA [Laribacter hongkongensis HLHK9] Length = 262 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/259 (35%), Positives = 138/259 (53%), Gaps = 13/259 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEK 78 IPKK GQNFL D I+ I + + G V+EIG G G LT+ LL L V+ I++ Sbjct: 5 IPKKRFGQNFLQDAFIIHSIVAAVDARPGDVVVEIGPGLGALTRPLLRALPQLHVVEIDR 64 Query: 79 DQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D I+ ++++ P RL I + DAL DF + P++++ NLPYNI T LLF+ Sbjct: 65 D-----IIARLAAEFPPERLVIHEGDALAFDFGALAH-EQPLKLVGNLPYNISTPLLFHL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 T+ + + QKEV +R+ A YGRL+V+ +R + D+ P F P Sbjct: 119 A---TYADRVTDMHFMLQKEVVDRMVADPGCADYGRLTVMLQYRFAMERLIDVPPESFDP 175 Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ IPH P P E+L + +AF +RRKTLR +L+ ++ GI Sbjct: 176 PPKVDSAVVRMIPHAELPWPADDEENLSALVAQAFAQRRKTLRNNLRGWLDDDDFAALGI 235 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++ +F ++N Sbjct: 236 DPQRRPETLTLREFVLLSN 254 >gi|94985245|ref|YP_604609.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300] gi|118600863|sp|Q1IZ94|RSMA_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94555526|gb|ABF45440.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300] Length = 281 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/267 (34%), Positives = 148/267 (55%), Gaps = 20/267 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L+ + + P K +GQNFL+D NIL+ IA++ G+ G+ V+E+G G G LT+ L G Sbjct: 17 VRDLLTRHGLRPTKSLGQNFLIDGNILRAIAQAGGAAPGVPVLEVGPGLGVLTRELAARG 76 Query: 70 ARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A V +EKD++ P+L + ++ Q ++++ DAL+ D+ ++ + R+IANLPY Sbjct: 77 A-HVTALEKDERLRPVLAETLAGQD---VQVVWGDALEFDYA---SLPAGTRVIANLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I LL ++ A P S T+L QKEV R+ A+ +YG LS L + Sbjct: 130 ITGPLLARFMQA----PGIISATVLVQKEVAGRLAARPGEDNYGFLSALAALYGTVQHVR 185 Query: 189 DISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--RLG 245 D+ F P+P VTS+V+ P P + K + A RRKTLR +L+ G Sbjct: 186 DVPKGAFLPAPDVTSSVVRLDFDRARPAPE--PAFLKFVEAALHHRRKTLRNNLRLAGFG 243 Query: 246 GENL---LHQAGIETNLRAENLSIEDF 269 GE + L AG+ ++RAE++ +ED Sbjct: 244 GEAVGEALMAAGLRPDVRAEDVPLEDL 270 >gi|227497769|ref|ZP_03927955.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434] gi|226832812|gb|EEH65195.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434] Length = 310 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 141/286 (49%), Gaps = 22/286 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D +++I ++G +G TV+E+G G G+LT +L G Sbjct: 21 VRALSQALGVRPTKTLGQNFVHDAGTVRRIVRAAGVRNGETVLEVGPGLGSLTLAILEAG 80 Query: 70 ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS----PI 119 A VI +E D Q P+ ++ + P RL ++ DAL +D ++ P Sbjct: 81 A-SVIAVEIDPPLAQALPVT--VAQRMPEAAGRLRVVGADALSIDGPAALGLADGDPLPT 137 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ +L ++A P ES+T++ Q EV +R+ A S YG SV Sbjct: 138 RLVANLPYNVAVPVLLTLLAAL---PSLESVTVMVQAEVADRLAAGPGSKVYGVPSVKAA 194 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR 238 W A I VF+P P V S ++ + P E++ + AF +RRKTLR Sbjct: 195 WYASARRTITIGRTVFWPVPNVDSALVELVRREPPSTRASREAVFAVVDAAFAQRRKTLR 254 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 Q+L L G + AGI+ R E L + DF + L D Sbjct: 255 QALAGLAGSPQAAEAAIRAAGIDPTRRGETLDVHDFAALAEALEDQ 300 >gi|148825174|ref|YP_001289927.1| dimethyladenosine transferase [Haemophilus influenzae PittEE] gi|148827743|ref|YP_001292496.1| dimethyladenosine transferase [Haemophilus influenzae PittGG] gi|229845712|ref|ZP_04465834.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1] gi|229846634|ref|ZP_04466742.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1] gi|166221669|sp|A5U9U3|RSMA_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221670|sp|A5UH57|RSMA_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|148715334|gb|ABQ97544.1| dimethyladenosine transferase [Haemophilus influenzae PittEE] gi|148718985|gb|ABR00113.1| dimethyladenosine transferase [Haemophilus influenzae PittGG] gi|229810727|gb|EEP46445.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1] gi|229811354|gb|EEP47061.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1] gi|309972298|gb|ADO95499.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae R2846] Length = 287 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + L + V+E D+ L+ HP +L +I+ DA++ DF E Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|313635198|gb|EFS01504.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067] Length = 295 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 21/282 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + T ++ + D P +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 132 YVTTPIILKLLH-DNIP--VDSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAELA 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG 245 F + VF P P V S VIH P+ + ++T+ +F +RRKTL +L Sbjct: 189 FIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNLASKF 248 Query: 246 GE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E L+ GI+ R E L I +F +++N L D Sbjct: 249 PELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|25011861|ref|NP_736256.1| dimethyladenosine transferase [Streptococcus agalactiae NEM316] gi|77414160|ref|ZP_00790325.1| dimethyladenosine transferase [Streptococcus agalactiae 515] gi|33516935|sp|Q8E3D7|RSMA_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24413402|emb|CAD47481.1| Unknown [Streptococcus agalactiae NEM316] gi|77159783|gb|EAO70929.1| dimethyladenosine transferase [Streptococcus agalactiae 515] Length = 290 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D ++ N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I PF E ++ Q+EV +RI+A N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIEGKI--PFAE-FVVMMQREVADRISAMPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ AF RRKTL +L Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF + + L + Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|154482621|ref|ZP_02025069.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC 27560] gi|149736521|gb|EDM52407.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC 27560] Length = 288 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 18/283 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + K I++ Y +K GQNFL+D N+L+ I + V+EIG G G +TQ L Sbjct: 9 ATKEIINKYSFAFQKKFGQNFLIDSNVLESIIRGAEITKDDFVLEIGPGIGTMTQYLCE- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANL 125 AR+V+ +E D+ PIL+D S++ N +E+I D LKVD + N PI+++ANL Sbjct: 68 AARQVVAVEIDKMLIPILEDTLSEYDN-VEVINQDVLKVDIKSLAEEKNNGKPIKVVANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T ++ ++ P +S+T++ QKEV +R+ S YG LS+ + A Sbjct: 127 PYYITTPIIMGLF--ESGVPI-DSITIMVQKEVADRMQTGPGSKDYGALSLAVQYYATAK 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 ++ ++S F P P V S VI H P + E L KI + +F +RRKTL LK Sbjct: 184 VILNVSATCFMPRPNVDSAVIKLTRHKEPTVNVADEKLMFKIIRASFNQRRKTLVNGLKN 243 Query: 244 -----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 E + + + G +R E L++E+F + N T+ Sbjct: 244 SPELSFSKEQIVKAIEKIGKPETIRGEALTLEEFAELANAFTE 286 >gi|91776504|ref|YP_546260.1| dimethyladenosine transferase [Methylobacillus flagellatus KT] gi|118600878|sp|Q1GZB8|RSMA_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91710491|gb|ABE50419.1| dimethyladenosine transferase [Methylobacillus flagellatus KT] Length = 255 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 143/264 (54%), Gaps = 15/264 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K + KK GQNFL D I+ + ++ ++EIG G G +TQ LL L V+ I Sbjct: 2 KHVAKKRFGQNFLTDRAIINSLIDAIAPQPQDCMVEIGPGLGAMTQPLLERLQHLHVVEI 61 Query: 77 EKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 ++D I++ + +P ++L I DALK +F NIS +R++ NLPYNI T +LF Sbjct: 62 DRD-----IIQWMQGHYPQDKLTIYASDALKFNFG---NISDRLRVVGNLPYNISTPILF 113 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + D P + + + QKEV ER+ A +S YGRLSV+ +R + + P F Sbjct: 114 HLL--DNVPHIID-MHFMLQKEVVERMVAAPSSAAYGRLSVMLQYRLHMEYLLTVPPEAF 170 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S + +P+ + P P E+ L +I AF +RRKTLR +LK L + Sbjct: 171 DPAPKVESAFVRAVPYTVLPHPAKDEALLGRIVTAAFAQRRKTLRNTLKGLLDDTGFASL 230 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI+ LRAEN++ F I N L Sbjct: 231 GIDPQLRAENIAPAGFVAIANYLA 254 >gi|126173221|ref|YP_001049370.1| dimethyladenosine transferase [Shewanella baltica OS155] gi|217974469|ref|YP_002359220.1| dimethyladenosine transferase [Shewanella baltica OS223] gi|166221700|sp|A3D188|RSMA_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807883|sp|B8EB35|RSMA_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|125996426|gb|ABN60501.1| dimethyladenosine transferase [Shewanella baltica OS155] gi|217499604|gb|ACK47797.1| dimethyladenosine transferase [Shewanella baltica OS223] Length = 268 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 27/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 + + + V+E D+ P+LKD +L I Q DAL+ DF + Sbjct: 53 EPVAE-AVDNLTVVELDRDLVERLHHHPVLKD-------KLTIHQGDALQFDFGQLSVPG 104 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234 + + + + ++ PH F P+PKV S V+ +P+ + P PC + L+ + AF RR Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRR 221 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR +LK + ++ Q GI+++ R E +S++ + + N++ D + Sbjct: 222 KTLRNNLKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267 >gi|260912726|ref|ZP_05919212.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325] gi|260633104|gb|EEX51269.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325] Length = 288 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D N+++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDDNVIQGIVSAIYPQKDQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS--- 116 + + L + V+E D+ L+ HP +++ +I+ DA++ DF + + + Sbjct: 53 EPVGDL-VDHLTVVELDRDLAERLR----HHPFLHHKITVIETDAMQFDFGQLYQEAKLA 107 Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKNQKMRVFGNLPYNISTPLMFHLFK---YHDCIQDMHFMLQKEVVKRLCAGPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ +PH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L + GI+ RAENLSI D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFTAEQLTELGIDLTARAENLSIADYARLANWLADN 272 >gi|323350567|ref|ZP_08086229.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66] gi|322123249|gb|EFX94934.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66] Length = 290 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD ++ N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285 >gi|86140929|ref|ZP_01059488.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217] gi|85832871|gb|EAQ51320.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217] Length = 285 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/280 (36%), Positives = 151/280 (53%), Gaps = 18/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69 K S + KK++GQ+FL D +I KKIAE+ S DG + V+EIG G G LT+ LL Sbjct: 10 KKTASEDPVKAKKHLGQHFLKDESIAKKIAETL-SYDGYSEVLEIGPGTGVLTKYLLRKD 68 Query: 70 ARKVIVIEKDQQFFPILK-DISSQHPNRLE-----IIQDDALKVDFEKFFNISSPIRIIA 123 + V ++ D + L +HP +E +++ D LK D K F I Sbjct: 69 SN-VTAMDLDSESIVYLNHSFPLEHPQLMEGCTLNVVEADFLKFDLSKLFG-DQAFAITG 126 Query: 124 NLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 N PYNI T+++F + D P F + +FQKEV +RI ++ S YG LSVL Sbjct: 127 NFPYNISTQIVFKMLEWRDQVPEF----SGMFQKEVAQRICEKEGSKAYGILSVLAQAFY 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 A +F + P VF P PKV S V+ P+ + C ++L K+ + AF +RRKTLR S Sbjct: 183 DAEYLFTVPPGVFNPPPKVDSGVLRLTRKPNYKDLACDPDALYKVVKMAFQQRRKTLRNS 242 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK+L + ++ I N+R E LS+E F ++T +T+++ Sbjct: 243 LKQLELSDAFRESEI-FNMRPEQLSVEAFIKLTQDITNDK 281 >gi|301155574|emb|CBW15042.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus parainfluenzae T3T1] Length = 287 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 151/288 (52%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116 + + L + V+E D+ L+ HP +L +I+ DA++ DF + + N++ Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGELYTKENLA 107 Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI N RAENL+I D+ R+ N LTDN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIGLNARAENLAIADYARLANWLTDN 272 >gi|89075559|ref|ZP_01161964.1| dimethyladenosine transferase [Photobacterium sp. SKA34] gi|89048699|gb|EAR54271.1| dimethyladenosine transferase [Photobacterium sp. SKA34] Length = 274 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 137/263 (52%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G +T+ + L K VIE D+ Sbjct: 13 RKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTVIELDRD 71 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I Q DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 72 LAERLEN----HPDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHIF 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + E + + QKEV R+ A S YGRL+V+ + + + ++ P F P+ Sbjct: 128 E---FHKDVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESFVPA 184 Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P PC L+ L ++ +E F +RRKT+R K L L G+ Sbjct: 185 PKVDSAVVRLTPYEVLPFPCTNLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEALGVN 244 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 R EN+++E F + N L N Sbjct: 245 PGHRPENITVEQFVAMANWLDAN 267 >gi|163750059|ref|ZP_02157302.1| dimethyladenosine transferase [Shewanella benthica KT99] gi|161330116|gb|EDQ01098.1| dimethyladenosine transferase [Shewanella benthica KT99] Length = 272 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 143/264 (54%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D N++ +I + + ++EIG G G LT+ + K+ V+E D+ Sbjct: 12 RKRFGQNFLTDHNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAE-SIDKLTVVELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ +HP ++LEI Q DAL DF + ++I NLPYNI T L+F+ Sbjct: 71 LVARLQ----KHPTLKHKLEIHQGDALNFDFSQLIEEGKELKIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +++ + QKEV R++A + YGRL+V+ + + + ++ P F P+ Sbjct: 127 Q---FAEHIKNMHFMLQKEVVLRLSATPGTKAYGRLTVMAQYHCQVMPVLEVPPESFTPA 183 Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P PC ++ L+ +T AF RRKTLR +LK + + I+ Sbjct: 184 PKVDSAVVRLVPYKQKPWPCKDVDFLRHMTTTAFSMRRKTLRNNLKHIISDEEFLSLNID 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 ++LR E +S+E + + N+L D + Sbjct: 244 SSLRPEQISVEQYVAMANMLLDKK 267 >gi|86516095|gb|ABC97698.1| KsgA [Shigella flexneri] Length = 256 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 136/262 (51%), Gaps = 18/262 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ +G R ++ VIE D+ Sbjct: 3 GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59 Query: 84 PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 L+ HP +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ----THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P P Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232 Query: 258 NLRAENLSIEDFCRITNILTDN 279 +RAEN+S+ C++ N L +N Sbjct: 233 AMRAENISVAQDCQMANYLAEN 254 >gi|227877971|ref|ZP_03995975.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01] gi|256844351|ref|ZP_05549837.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN] gi|256849246|ref|ZP_05554679.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US] gi|312978360|ref|ZP_07790102.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05] gi|227862441|gb|EEJ69956.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01] gi|256613429|gb|EEU18632.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN] gi|256714022|gb|EEU29010.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US] gi|310894703|gb|EFQ43775.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05] Length = 294 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 24/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D + I E++G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFE----KFFNISSPIR 120 KV E D IL K I Q +R ++I D LK DF+ FF+ + PI+ Sbjct: 74 -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKVDISDFFDFTKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ S YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + +S + F P PKV S+V+ P L P +E+ K + + F +RRKTL Sbjct: 190 EMNVKLALQVSHNSFMPRPKVDSSVVVLTP-LKEKP-AIENRKHFIWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L + L + G+ +R E L+I+ F +I + + Sbjct: 248 NNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291 >gi|320335301|ref|YP_004172012.1| ribosomal RNA small subunit methyltransferase A [Deinococcus maricopensis DSM 21211] gi|319756590|gb|ADV68347.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus maricopensis DSM 21211] Length = 282 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 150/276 (54%), Gaps = 17/276 (6%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++ ++ + I K +GQNFL+D N+L+ IA++ G+ G++V+E+G G G LT+ + Sbjct: 13 RTVRDLMQRHGIRATKSLGQNFLVDGNVLRSIADAGGAASGVSVLEVGPGLGVLTREVAE 72 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GA V+ +EKD++ P+L + + +E++ DALK D+++ + R+IANLPY Sbjct: 73 RGA-HVVTLEKDERLRPVLAETLAGLD--VEVVWGDALKFDYDR---LPDGTRVIANLPY 126 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T LL ++++ S T+L Q+EV ER+ A+ YG +S L + ++ Sbjct: 127 YISTALLSKFMAS----ARIVSATVLVQREVAERLAAKPGEDAYGFMSALAALHGRVRIV 182 Query: 188 FDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ F P+P VTS+V+ F + L ++ + A RRKT+R +L+ G Sbjct: 183 RDVPKGAFIPAPDVTSSVVRLDFTGFEDSGQKPDARLIRLMEAALHHRRKTMRNNLRMAG 242 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L G+ ++RAE++++ D R L Sbjct: 243 FDAGAVEQALETVGLRADVRAEDVALRDMHRFAQAL 278 >gi|319760270|ref|YP_004124208.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str. BVAF] gi|318038984|gb|ADV33534.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str. BVAF] Length = 269 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 148/270 (54%), Gaps = 14/270 (5%) Query: 16 HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 HYK II KK+ GQ FL D NI+ I T+IEIG G G LTQ +L + + Sbjct: 5 HYKNHIIKKKW-GQIFLTDQNIINSIINIFQPQHKQTIIEIGPGLGALTQPILNV-VDFL 62 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGT 131 IVIE+D Q K + + +L+I D +K++F + S IR+I NLPYNI T Sbjct: 63 IVIERDPQL--TQKLFQNFNTKKLKIFNTDVMKINFFNLIPLKSNQKIRLIGNLPYNIAT 120 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +L+ + + + + QKEVG+RI AQ NS YGRLS++T + + + ++S Sbjct: 121 QLIVHLFK---YTKIIYDMHFMLQKEVGKRIIAQPNSKEYGRLSIMTQYHYQVSSRLEVS 177 Query: 192 PHVFFPSPKVTSTVIHFIPHLN--PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 F P PKV S +I F P+ P P + L +T+ AF +RRK ++ SL L Sbjct: 178 KQSFIPIPKVESMIIQFTPYHAHFPYPIVDIRLLSFLTKIAFHQRRKIIKNSLSSLFNTK 237 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + G++T LR+ENL+I+ FC + IL + Sbjct: 238 EMQKCGLDTTLRSENLTIQQFCMLAEILHN 267 >gi|319745733|gb|EFV98030.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813] Length = 290 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLRDFDN-VQVVNKDILKADLQTQIQAFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ AF RRKTL +L Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF + + L + Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|327262022|ref|XP_003215825.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Anolis carolinensis] Length = 345 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ ++ +K+ K + QNFLLDL + KIA S+G+L V E+G GPG +T+ +L Sbjct: 17 TIGEVIKLFKLKAVKQLSQNFLLDLRLTDKIARSAGNLKDAHVCEVGPGPGGITRAILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 G +++++EKD +F P L+ +S P ++ ++ D L + F + I Sbjct: 77 GVAELLLVEKDPRFIPGLQMLSEAAPGKVRVVHGDILTYKLGQAFPNHLIKNWEDDPPDI 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + LTL FQKEVGER+TA + RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISKRDGPFRYGRTQLTLTFQKEVGERLTASTGTRQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S+++ + F I F P P V TV+HF P + P I + ++K+ Q F R Sbjct: 197 SIMSQYLCTVHKCFTIPGKAFVPKPDVDVTVVHFTPLVQPKIEQPFKLVEKVVQSVFQFR 256 Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNI 275 RK ++ L E +L A ++ LR LS+ F + ++ Sbjct: 257 RKYCHHGIRILFPEATRLEKAEQMLMLADVDPTLRPTQLSMFHFKNLCDV 306 >gi|197101331|ref|NP_001126887.1| dimethyladenosine transferase 1, mitochondrial [Pongo abelii] gi|75054716|sp|Q5R4V9|TFB1M_PONAB RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|55733044|emb|CAH93207.1| hypothetical protein [Pongo abelii] Length = 343 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLLRVQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPI 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S + Sbjct: 77 DVAELLVVEKDTRFVPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPDV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L+ L E LL A ++ LR SI F + ++ Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSLCDV 306 >gi|298345589|ref|YP_003718276.1| putative dimethyladenosine transferase [Mobiluncus curtisii ATCC 43063] gi|298235650|gb|ADI66782.1| possible dimethyladenosine transferase [Mobiluncus curtisii ATCC 43063] Length = 309 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 151/297 (50%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV----DFEKFFNISSPI 119 LG KVI IE DQ+ L +QH L ++ DAL++ D E ++P Sbjct: 66 ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWAAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF---------IPHLNPIPCCL--ESLKKITQE 228 W +A F + +VF+P P V STV+ F L P L E+++ + QE Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKPSAEGLTDEAIETLRQE 241 Query: 229 -------AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 AF +RRKTLRQSL G NLL AGI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298 >gi|251793858|ref|YP_003008590.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700] gi|247535257|gb|ACS98503.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700] Length = 287 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D N+++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQSHQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + ++ V+E D+ L+ HP +L +I+ DA++ DF E Sbjct: 53 EPVAE-QVERLTVLELDRDLAERLR----HHPFLHQKLSVIETDAMQFDFSGLYEQEHLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKMRVFGNLPYNISTPLMFHLFK---YHHIIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH + P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHAILPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L I+ N RAENLSI D+ R+ N L DN Sbjct: 225 QRRKTLRNALSDLFLPENLTALNIDLNARAENLSIADYARLANWLADN 272 >gi|21672424|ref|NP_660491.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090650|sp|Q8KA00|RSMA_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21623034|gb|AAM67702.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 274 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/265 (34%), Positives = 144/265 (54%), Gaps = 9/265 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P K QNFL++ N++KKI + T++EIG G G LT+ + + ++IVIE Sbjct: 7 KHLPLKRFSQNFLINQNLIKKIVKFINPQLKQTLVEIGPGLGALTKPICNI-VDELIVIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFN 136 D LK S ++L + DAL D+ F+ + IRI NLPY+I T LLF Sbjct: 66 IDLNLLNFLKKYSFY--SKLIVFCQDALIFDYLNLFYKKNKLIRIFGNLPYHISTSLLFC 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + + + QKEV ER+ A + YGRLS++ + ++F+++ F Sbjct: 124 FFEKNK---IIQDMNFMLQKEVAERLIAFPGTKSYGRLSIIAQYYCNIKIIFNVASENFR 180 Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PK+ ST ++ +PH ++ L IT AF KRRK LR SL ++ E + + Sbjct: 181 PIPKIDSTFVNLVPHKKSPYFTHDIKVLSYITNLAFQKRRKILRHSLGKIFSEKIFLKLN 240 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 ++ LRAENLSI +C+++N + +N Sbjct: 241 VDPKLRAENLSILQYCQLSNYIIEN 265 >gi|71909268|ref|YP_286855.1| dimethyladenosine transferase [Dechloromonas aromatica RCB] gi|119365019|sp|Q479U6|RSMA_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71848889|gb|AAZ48385.1| dimethyladenosine transferase [Dechloromonas aromatica RCB] Length = 255 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + +K GQNFL+D I+ I + TV+EIG G G +T+ L+ + VIE D Sbjct: 5 VARKRFGQNFLVDQGIIAAIISAVDPKRDETVVEIGPGLGAITEPLMA-RVDHLHVIEID 63 Query: 80 QQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + LK QH P R+ + + DAL DF +I +R++ NLPYNI T LLF+ Sbjct: 64 RDLIARLK---KQHTPERMTVHEGDALAFDFA---SIGKNLRLVGNLPYNISTPLLFHLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV ER+ A+ + +GR+SV+ +R + D+ P F P Sbjct: 118 E---YVDVVHDMHFMLQKEVVERMVAEPGNADFGRMSVMLQYRFYLEWLIDVPPESFDPP 174 Query: 199 PKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 PKV S V+ IP P+ E L ++ AF +RRK LR ++K L + + G Sbjct: 175 PKVQSAVVRLIP--KPVSELNAKSQEKLSQVALTAFSQRRKMLRNTMKTLLSDAAFTELG 232 Query: 255 IETNLRAENLSIEDFCRITNILT 277 I+ R E++S+ED+ RI N L+ Sbjct: 233 IDPTCRPEDVSVEDYVRIANYLS 255 >gi|115529417|ref|NP_001070237.1| dimethyladenosine transferase 1, mitochondrial [Danio rerio] gi|115313290|gb|AAI24403.1| Zgc:153625 [Danio rerio] gi|182891088|gb|AAI65534.1| Zgc:153625 protein [Danio rerio] Length = 269 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 128/248 (51%), Gaps = 15/248 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ Y + +K + QNFLLD + KI +G+L+ V E+G GPG LT+ +L Sbjct: 17 TIGEIIKLYNLKAQKQLSQNFLLDTRLTDKIVRQAGNLNNAHVCEVGPGPGGLTRSILKA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119 GA ++V+EKD +F P L+ +S P R+ I Q D L E+ F NI+ + Sbjct: 77 GAADLLVVEKDMRFIPGLQLLSEAAPGRIRIAQGDILAYKLERRFPANITKTWEDDPPNL 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+N+ T L+ W+ ++ F LTL FQKE ER+TA S RL Sbjct: 137 HIIGNLPFNVSTPLIIKWLEQMSNRTGIFMFGRTRLTLTFQKEAAERLTASTGSRQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + T F I F P P V V+HF P P I + ++KI + AF R Sbjct: 197 SVMAQYLTTVKSCFTIPGQAFVPKPNVDVGVVHFTPLAQPQIQQPFKLVEKIVKNAFQFR 256 Query: 234 RKTLRQSL 241 RK R+ L Sbjct: 257 RKHCRRGL 264 >gi|326794309|ref|YP_004312129.1| ribosomal RNA small subunit methyltransferase A [Marinomonas mediterranea MMB-1] gi|326545073|gb|ADZ90293.1| Ribosomal RNA small subunit methyltransferase A [Marinomonas mediterranea MMB-1] Length = 266 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 140/262 (53%), Gaps = 10/262 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D+ I+++I +G V+EIG G G LT+ +++ + + V+E D+ Sbjct: 10 RKRFGQNFLHDMGIIRRIVACIAPKEGQRVVEIGPGKGALTEGIIS-ATKSMDVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 PILK ++P+ L + + DA+K DF + + IR++ NLPYNI T L+F+ + A Sbjct: 69 LIPILKVNLFKYPD-LRVHEADAMKFDFRQLATEGN-IRVVGNLPYNISTPLIFHLLEQA 126 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + + QKEV +R+ A+ YGRLSV+ + +F + P F P PK Sbjct: 127 DVI----DDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYFCSVESLFIVGPDSFDPPPK 182 Query: 201 VTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S ++ P+ L + L+ L+ + F +RRKTLR + K L I+ Sbjct: 183 VDSAIVRMTPYTTLPVVAHDLKGLEDTVRIGFQQRRKTLRNNYKGTLTAEELESIQIDPT 242 Query: 259 LRAENLSIEDFCRITNILTDNQ 280 LR E L + DF RI N L + + Sbjct: 243 LRPERLDVPDFVRIANYLHEKK 264 >gi|87119768|ref|ZP_01075665.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121] gi|86165244|gb|EAQ66512.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121] Length = 270 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 9/264 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +++ I G ++EIG G G LTQ ++ + V+E D+ Sbjct: 10 RKRFGQNFLHDHGVIRNIVACIAPKKGQRIVEIGPGKGALTQGIIA-ATESMDVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PILK ++P L I + DA+K DF + + IR++ NLPYNI T L+F+ +S Sbjct: 69 LIPILKVNLFRYPE-LRIHEADAMKFDFSQLATEGN-IRVVGNLPYNISTPLIFHLLSQA 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +++ + QKEV +R+ A+ YGRLSV+ + + +F + P F P+PKV Sbjct: 127 N---IIDNMHFMLQKEVVDRLAARPGDNLYGRLSVMAQYYCQVESLFVVGPESFDPAPKV 183 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ P+ + LE+L++ + F +RRKTLR + K + + I+ L Sbjct: 184 DSAIVRMTPYQEKPYLADSLETLERAVRLGFQQRRKTLRNNYKGILNNDDFDALDIDPGL 243 Query: 260 RAENLSIEDFCRITNILTDNQDIA 283 R E L + DF +I N L DN++ + Sbjct: 244 RPERLDVPDFVKIANYL-DNKEAS 266 >gi|329957566|ref|ZP_08298041.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056] gi|328522443|gb|EGF49552.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056] Length = 268 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 138/257 (53%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ LL R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPKLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F +S HVF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K++ + F +RRKTLR S+K + G+ + Sbjct: 177 PKVKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDLLF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+++F +TN Sbjct: 237 NKRPEQLSVQEFIELTN 253 >gi|332072170|gb|EGI82656.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301] Length = 290 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + I+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLSIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRRKTLWNNLTGY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285 >gi|160891201|ref|ZP_02072204.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492] gi|317481090|ref|ZP_07940169.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36] gi|156859422|gb|EDO52853.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492] gi|316902803|gb|EFV24678.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36] Length = 264 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 137/255 (53%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ I ++E+G G G LTQ LL R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVELDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ Q + II+DD LK++ ++ F P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFG-GQPFVLTGNYPYNISSQIFFKMLEY 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F + HVF P PK Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + C E L K++ + F +RRKTLR S+K + G++ + N Sbjct: 179 VKSAVICMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+++F ++TN Sbjct: 239 RPEQLSVQEFIQLTN 253 >gi|89094173|ref|ZP_01167116.1| dimethyladenosine transferase [Oceanospirillum sp. MED92] gi|89081648|gb|EAR60877.1| dimethyladenosine transferase [Oceanospirillum sp. MED92] Length = 268 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 141/259 (54%), Gaps = 8/259 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+++I S + T++EIG G G LT+ LL A ++ IE D+ Sbjct: 11 RKRFGQNFLHDHGIIRRIIRSIAPHETDTMVEIGPGLGALTEELLA-EAGELDAIELDRD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 PIL+ + ++ I + DA+K DF + +RI+ NLPYNI T+L+F+ +S A Sbjct: 70 LPPILRTKFFSYGDKFRIHEADAMKFDFTQLRRSEKRLRIVGNLPYNISTQLIFHLLSHA 129 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D E + + QKEV +R+ A +YGRL ++ + K +F + P F P+PK Sbjct: 130 DD----VEDMHFMLQKEVVDRMAAGPGENNYGRLGIMAQYFCKVESLFVVPPGAFNPAPK 185 Query: 201 VTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S +I P+ L + +E L+ + + AF RRKTLR +LK L + I+ Sbjct: 186 VDSAIIRLTPYRELPYVADEVEQLQTVVRTAFNMRRKTLRNNLKPLLSAEEIEALNIDPG 245 Query: 259 LRAENLSIEDFCRITNILT 277 LR E L I DF I+N L+ Sbjct: 246 LRPEKLPISDFVAISNYLS 264 >gi|127511813|ref|YP_001093010.1| dimethyladenosine transferase [Shewanella loihica PV-4] gi|166221702|sp|A3QBA3|RSMA_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126637108|gb|ABO22751.1| dimethyladenosine transferase [Shewanella loihica PV-4] Length = 269 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 149/286 (52%), Gaps = 27/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDSNVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 + + K+ V+E D+ Q P LKD +LEI Q DALK DF++ Sbjct: 53 EPVAE-SIDKLTVVELDKDLVERLQTHPFLKD-------KLEIHQGDALKFDFKQLVEEG 104 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V Sbjct: 105 KQMKVFGNLPYNISTPLMFHLFE---FAEHIENMHFMLQKEVVLRLSAAPGTKAYGRLTV 161 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +P+ P PC ++ L+ + AF RR Sbjct: 162 MAQYFCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKEKPYPCKDVDLLRHLCTTAFNMRR 221 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR +LK+L ++ GI+ ++R E ++++ + + N L D + Sbjct: 222 KTLRNNLKQLLNDDDFSALGIDASMRPEQITVQQYVAMANHLVDKR 267 >gi|330686078|gb|EGG97700.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU121] Length = 296 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ KI ++S + +IE+G G G+LT+ L A Sbjct: 13 RALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLAK-HA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +KV+ E D + P+LKD + + N + II +D LK D + I ++ANLP Sbjct: 72 KKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVTEHLKDCDKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ + YG LS++T + T+ + Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNNYQNF 247 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 E H +A I+ R E LSI+DF ++ Sbjct: 248 FKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQL 284 >gi|48976087|ref|NP_852139.2| dimethyladenosine transferase 1, mitochondrial [Rattus norvegicus] gi|47718050|gb|AAH70907.1| Transcription factor B1, mitochondrial [Rattus norvegicus] gi|149038492|gb|EDL92822.1| transcription factor B1, mitochondrial [Rattus norvegicus] Length = 345 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ + + K + QNFLLDL + KI +GSL + V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F NI + Sbjct: 77 DIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + +F I F P P+V V+H +P + P I + ++K+ Q F R Sbjct: 197 SIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L E LL A I+ LR +LS+ F + ++ Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDV 306 >gi|281345012|gb|EFB20596.1| hypothetical protein PANDA_016957 [Ailuropoda melanoleuca] Length = 345 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L+I+ D L E+ F S P + Sbjct: 77 NVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+N+ T L+ W +S P + +TL FQKEV ER+TA S RL Sbjct: 137 HIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + + I F P P+V V+ F P + P I + ++K+ + AF R Sbjct: 197 SVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAFQFR 256 Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279 RK + L L E LL A ++ L+ LS+ F C + + D Sbjct: 257 RKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCDE 313 >gi|269302858|gb|ACZ32958.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN] Length = 277 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 151/277 (54%), Gaps = 18/277 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + L +LS + PKK + QNFL+D NI+KKI +S + V+EIG G G Sbjct: 1 MTRSSPAQ-LSRLLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ GA+ VI IEKD F P L+++ P RLEII +D + + R Sbjct: 60 LTEELIAAGAQ-VIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114 Query: 121 IIANLPYNIGTRLLFN-WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPY+I T LL ++ A P FW+++T++ Q EV RI AQ YG L++ Sbjct: 115 VVANLPYHITTPLLTKLFLEA---PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236 + F +S F+P P+V S VIH + +P E + +T+ AF +RRK Sbjct: 172 FFADIHYAFKVSASCFYPKPQVQSAVIH-MKVKETLPLSDEEIPVFFTLTRTAFQQRRKV 230 Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDF 269 L +LK L + + QA G+ N+R E LS+ D+ Sbjct: 231 LANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDY 267 >gi|332638745|ref|ZP_08417608.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Weissella cibaria KACC 11862] Length = 298 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 21/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ + I KK +GQNFL D+NILK I + V+EIG G G LT+ L A Sbjct: 14 QAIMNQFGINTKKSLGQNFLTDINILKNIVAAGDVQKTDNVVEIGPGIGALTEQL-ARAA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANL 125 ++V+ E D + P+L + + N + I+ +D LKVD EK F ++++P++++ANL Sbjct: 73 KQVVAFEIDDRLIPVLDHTMAPYDN-VTIVHNDILKVDLEKEFAKQFEDVTAPLKLVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + + ++++ ++ QKEV +R++A+ + YG L++ +R A Sbjct: 132 PYYITTPILMQVLQSGIH---FDNIVVMMQKEVADRLSAEPGTKDYGSLTLAVQYRMNAK 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + F +S F P+P V S +I P L P + L ++ + F RRKTL +L Sbjct: 189 LAFTVSRTAFVPNPNVDSAIISLTPREPLAIQPRDEKRLFELFKIGFVMRRKTLWNNLTT 248 Query: 244 LGGENLLHQAGIETNL---------RAENLSIEDFCRITNILTD 278 G+ QA + L RAE LS+E F + N L D Sbjct: 249 AFGKGEAMQAKLTAALAAIDLDPRTRAEKLSLERFVELHNALFD 292 >gi|310825990|ref|YP_003958347.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612] gi|308737724|gb|ADO35384.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612] Length = 285 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 149/283 (52%), Gaps = 24/283 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ IL+ Y + K GQNFL+D NI++KI E+ TV+EIG G G +TQ+L Sbjct: 10 IEGILNKYDLHFNKRYGQNFLIDENIVRKIVEAGNVHKNDTVLEIGPGIGTMTQVLAE-A 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLP 126 A KV +E D++ P+L + + N +EIIQ D LK D + +P++I+ANLP Sbjct: 69 AGKVYSVEIDKKLIPVLAK-TLEDCNNVEIIQGDILKTDIPGLLRTNLQKNPLKIVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ ++ ++ P E +T + QKEVGER+ A+ + YG L++ + + + Sbjct: 128 YYVTTPIIMGFLESE-LP--IEQMTFMIQKEVGERLCAEPGTKAYGSLTIAAQFYAETEI 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLK 242 F + VF P PKV S V+ P S KK I + +F RRKTL L+ Sbjct: 185 SFYVPAAVFMPRPKVDSIVVTLKKRAE--PAIRVSDKKLFFQIVKASFLNRRKTLINGLQ 242 Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 RL N L + GI +R E L+ EDF R+ N L+ Sbjct: 243 MNTDYSKERL--LNALEKCGIAPGVRGETLTGEDFARLANTLS 283 >gi|224367389|ref|YP_002601552.1| KsgA [Desulfobacterium autotrophicum HRM2] gi|259494248|sp|C0QFJ2|RSMA_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|223690105|gb|ACN13388.1| KsgA [Desulfobacterium autotrophicum HRM2] Length = 284 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 145/277 (52%), Gaps = 21/277 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L +++ +K +GQNFL D N + I +G D V+EIG G G LT L AR Sbjct: 7 LLKKQQLMARKELGQNFLSDPNAARMIVTKAGISDQDRVLEIGPGLGALTIPAAKL-ARD 65 Query: 73 VIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 ++ +EKD + IL +++ + +E+I +D L D F I +I NLPYNI + Sbjct: 66 LVAVEKDTRLAGILMEELKRESIENVELINNDILHQDLNTLFR-GEKIIVIGNLPYNISS 124 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++LF + + L+FQKE+ ERI+A YGRLSV+ + + + D+ Sbjct: 125 QVLFMLVENRH---LIKRAVLMFQKELTERISASPGGRDYGRLSVVMQYCSTVKKIADLP 181 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGE- 247 PH+FFP P V S VI + P E L K+ + AF KRRKTLR SL GGE Sbjct: 182 PHLFFPKPAVDSRVIE-VNFFETTPYSGERERFLFKVIKAAFSKRRKTLRNSLA--GGEL 238 Query: 248 --------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L A I+ RAE LS+E++ R+++ L Sbjct: 239 DIDTKVSAKILETAEIDPVRRAETLSVEEYSRLSDAL 275 >gi|90580799|ref|ZP_01236602.1| dimethyladenosine transferase [Vibrio angustum S14] gi|90438067|gb|EAS63255.1| dimethyladenosine transferase [Vibrio angustum S14] Length = 274 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S L G ++EIG G G +T+ + L K VIE D+ Sbjct: 13 RKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTVIELDRD 71 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I Q DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 72 LAERLEN----HPDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHIF 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + E + + QKEV R+ A S YGRL+V+ + + + ++ P F P+ Sbjct: 128 E---FHKDVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESFVPA 184 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L G+ Sbjct: 185 PKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEALGVN 244 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 R EN+++E F + N L N Sbjct: 245 PGNRPENITVEQFVAMANWLDAN 267 >gi|82701652|ref|YP_411218.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196] gi|119365040|sp|Q2YBP5|RSMA_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|82409717|gb|ABB73826.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196] Length = 259 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 142/259 (54%), Gaps = 17/259 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKD 79 P++ GQNFL+D + I + ++EIG G G LTQ LL +L V+ I++D Sbjct: 5 PRRRFGQNFLVDSQTVTDIVHALHPRREDVMVEIGPGLGALTQPLLQSLEHLHVVEIDRD 64 Query: 80 QQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 I+K + ++ RL + + DAL+ DF ++ +R++ NLPYNI T LLF+ Sbjct: 65 -----IVKRLRNEFSAKRLTVHEGDALEFDFS---SLGESLRVVGNLPYNISTPLLFHL- 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A+ ++ YGRLSV+ R + +F + P F P Sbjct: 116 --SRFTDHLRDMHFMLQKEVVARMVAKPSTSDYGRLSVMLQCRFEMEQLFIVPPECFHPP 173 Query: 199 PKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLK-RLGGENLLHQAGI 255 PKV S V+ IP P I E L +I AF +RRK LR +L+ L GE+ L + GI Sbjct: 174 PKVQSAVVRMIPLKKPLIEASQEKLFAEIVSAAFSQRRKILRNTLRDYLTGEDYL-KLGI 232 Query: 256 ETNLRAENLSIEDFCRITN 274 ++NLRAENLSI + ITN Sbjct: 233 DSNLRAENLSITQYVAITN 251 >gi|284008564|emb|CBA75122.1| dimethyladenosine transferase [Arsenophonus nasoniae] Length = 241 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 126/230 (54%), Gaps = 14/230 (6%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106 ++EIG G G LT + ++ + V+E D+ L + HP +L IIQ+DA+ Sbjct: 12 AIVEIGPGLGALT-LPVSEHIENMTVVELDRDLAARL----AAHPALSAKLTIIQNDAMT 66 Query: 107 VDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 +DF P+R NLPYNI T L+F+ T+ + + QKEV R+ A Sbjct: 67 IDFGAIAKEKGQPLRAFGNLPYNISTPLMFHLF---TYTNAIADMNFMLQKEVVNRLVAG 123 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLK 223 N+ YGRLSV+ + + + + P F P+PKV S V+ IPH NP P C ++ L Sbjct: 124 PNTKAYGRLSVMAQYYCQIIPILAVPPSAFTPAPKVDSAVVRLIPHQRNPYPICDVKLLS 183 Query: 224 KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 +IT +AF +RRKT+R SL L Q GI+ N RAEN+S+E++C++ Sbjct: 184 RITTQAFNQRRKTIRNSLSDLFSVQDFEQLGIDPNCRAENISVENYCKLA 233 >gi|312792586|ref|YP_004025509.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179726|gb|ADQ39896.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 282 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 151/270 (55%), Gaps = 13/270 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L ++L Y + P K +GQNFL+D N+++KI S ++G V+EIGAGPG LT + L Sbjct: 9 ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFS-QVEGKEVVEIGAGPGTLT-VYLAK 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV +E D++ +LK++ Q + ++I+ D L+++ + N + + I+ NLPY Sbjct: 67 TAQKVFAVEIDKKILNVLKEVC-QVISNVQIVNSDFLELNVKDLTN-GNKVYIVGNLPYY 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + +++LF E T++ QKEV +R+ A+ + YG L+V + + F Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245 +S +VF+P P+V S V+ + ++ KI F RRKT+ +L + Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNALSNQLDIA 241 Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272 + L +H AG++ NLRAE+LS++D+ R+ Sbjct: 242 KDELKKIIHMAGLDENLRAEDLSLDDYIRL 271 >gi|166031341|ref|ZP_02234170.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC 27755] gi|166028746|gb|EDR47503.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC 27755] Length = 292 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 153/289 (52%), Gaps = 21/289 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ IL Y +K GQNFL+D ++L+KI ++G V+EIG G G + Sbjct: 5 TLGNPQNTIE-ILQKYHFNFQKKFGQNFLIDTHVLEKIISAAGITKDDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KV +E D+ PIL+D S++ N + +I DD LKVD N P Sbjct: 64 TQYLAE-AAGKVAAVEIDKNLIPILEDTLSEYDNVM-VINDDVLKVDIRGLVEKENGGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T ++ + P ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 VKVVANLPYYITTPIIMGLFEGNV--PV-ESITVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + ++ ++ P+ F P PKV S VI H P P +++ K I + +F +RRK Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTRHAAP-PVKVDNEKWMFDIIRASFNQRRK 237 Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 TL L +L + + G ++R E+LS+E+F ++N L Sbjct: 238 TLANGLSNSDKIDLPKDVITEAIAKLGKGESVRGESLSLEEFAALSNDL 286 >gi|262275064|ref|ZP_06052875.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886] gi|262221627|gb|EEY72941.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886] Length = 268 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G LT+ + K+ V+E D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPQPGENLVEIGPGLGALTEPV-AREVDKLSVVELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA+K DF + + P+RI NLPYN+ T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIYEGDAMKFDFTQLSSDDKPLRIFGNLPYNVSTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + + + + QKEV R+ A NS YGRL+V+ + K + ++ P F P+ Sbjct: 127 S---FAGKVKDMHFMLQKEVVNRLAAGPNSKAYGRLTVMAQYYCKVVPVLEVPPSAFKPA 183 Query: 199 PKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +PH P P L+ L+++ +E F +RRKT+R K L + + GI+ Sbjct: 184 PKVDSAVVRLVPHKELPHPTTSLKWLERVCREGFNQRRKTVRNCYKSLIDADTMESLGID 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 + R E+L++ F + N + N Sbjct: 244 PSARPESLTLAQFVALANWMDANH 267 >gi|167766021|ref|ZP_02438074.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1] gi|167712101|gb|EDS22680.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1] Length = 285 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 155/289 (53%), Gaps = 19/289 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N ++++ ++ Y +K GQNFL+D +L+KI ++ V+EIG G G Sbjct: 1 MKLGNPKNTIE-VIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+V+ +E D+ PIL D S + N + I+ D LKVD K N Sbjct: 60 MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ + +S+T++ QKEV +R+ + + YG LS+ Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI + + PI E L ++ + +F +RRK Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDAPIKVTNEKLLFQLIRASFNQRRK 234 Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 TL+ +K GG N L + + ++R E L++E F +++NIL Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283 >gi|301783565|ref|XP_002927199.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like [Ailuropoda melanoleuca] Length = 351 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L+I+ D L E+ F S P + Sbjct: 77 NVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+N+ T L+ W +S P + +TL FQKEV ER+TA S RL Sbjct: 137 HIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + + I F P P+V V+ F P + P I + ++K+ + AF R Sbjct: 197 SVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAFQFR 256 Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279 RK + L L E LL A ++ L+ LS+ F C + + D Sbjct: 257 RKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCDE 313 >gi|299536734|ref|ZP_07050044.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1] gi|298727848|gb|EFI68413.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1] Length = 293 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL+ I + + IE+G G G LT+ L A Sbjct: 12 QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHL-ARSA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126 +KV+ E DQ+ P+L+D S + N + II D LK D EK P I ++ANLP Sbjct: 71 KKVVSFEIDQRLLPVLEDTLSPY-NNVSIIHSDILKADVEKVIADEMPGIDDIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L ++ D P ++ QKEV +RITA+ + YG LS+ + KA + Sbjct: 130 YYVTTPILLKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKADI 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK-- 242 + VF P P V S VI I H P ++ L +T+ +F +RRKT+ +L+ Sbjct: 187 AMTVPKTVFMPQPNVDSAVIRLIKHEEPPVKVIDEDFLFVVTRASFVQRRKTIYNNLQSG 246 Query: 243 ----RLGGENLLHQ---AGIETNLRAENLSIEDFCRITNIL 276 + +++L A IE R E LSI++F ++ + L Sbjct: 247 LPNGKAQKDHILQALELANIEPTRRGETLSIQEFGKLADAL 287 >gi|262047261|ref|ZP_06020219.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US] gi|260572506|gb|EEX29068.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US] Length = 294 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 24/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D + I E++G VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFE----KFFNISSPIR 120 KV E D IL K I Q +R ++I D LK DF+ FF+ + PI+ Sbjct: 74 -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDLLKADFKVDISDFFDFTKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ S YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + +S + F P PKV S+V+ P L P +E+ K + + F +RRKTL Sbjct: 190 EMNVKLALQVSHNSFMPRPKVDSSVVVLTP-LKEKP-AIENRKHFIWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L + L + G+ +R E L+I+ F +I + + Sbjct: 248 NNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291 >gi|322386716|ref|ZP_08060340.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100] gi|321268998|gb|EFX51934.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100] Length = 290 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 147/284 (51%), Gaps = 20/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFLAE-SA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D N + ++ D LKVD ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVKDEKFFFKVSKASFVHRRKTLWNNLTSH 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G++ L QA + ++R E L++ DF R+ + L + Sbjct: 245 FGKSEDTKAKLTAALEQAELSPSVRGEALTLADFARLADALKEQ 288 >gi|297582384|ref|YP_003698164.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10] gi|297140841|gb|ADH97598.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10] Length = 298 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 141/278 (50%), Gaps = 19/278 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL++ N+L+KI E++ VIEIG G G LT+ + A Sbjct: 13 KAILERYGFSFKKSLGQNFLIEPNVLRKIVETAELSPDSGVIEIGPGIGALTEQSAKM-A 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 RKV+ E DQ+ PIL D S +P+ +EI D LK D + F + ++ANLP Sbjct: 72 RKVLAYEIDQRLLPILADTLSLYPH-VEIRHGDVLKADVHADVREVFEADQDLAVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + ++ QKEV ERI A S +YG LS+ + +A + Sbjct: 131 YYVTTPIMMKLLE-EKLP--VRVMVMMMQKEVAERIAADPGSKNYGSLSIAVQYYAEAKL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL------- 237 MF + VF P P V S ++ P L+ + Q AF +RRKTL Sbjct: 188 MFTVPKTVFVPQPNVDSAILRLTRRSEPPVDVLDEGFFFDVIQGAFTQRRKTLLNNLSVF 247 Query: 238 -RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + SL + + L I+ RAE +S+ +F RI++ Sbjct: 248 FKDSLSKPEVQAALEALEIDPKRRAETVSMAEFARISD 285 >gi|189468116|ref|ZP_03016901.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM 17393] gi|189436380|gb|EDV05365.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM 17393] Length = 271 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 141/259 (54%), Gaps = 12/259 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ G+ V+E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDVCPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L++ ++P+ LE II+DD LK++ ++ FN P + N PYNI +++ F Sbjct: 63 DYESVAYLRE---EYPS-LEDNIIEDDFLKMNLQRLFN-GQPFVLTGNYPYNISSQIFFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P T + QKEV ERI A S YG LS+L + +F + HVF Sbjct: 118 MLDNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFN 174 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + C E L K++ + F +RRKTLR S+K + G++ + Sbjct: 175 PPPKVKSAVIRMTRNETQDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDV 234 Query: 256 ETNLRAENLSIEDFCRITN 274 N R E LS++ F +TN Sbjct: 235 LFNKRPEQLSVQQFTDLTN 253 >gi|320449691|ref|YP_004201787.1| dimethyladenosine transferase [Thermus scotoductus SA-01] gi|320149860|gb|ADW21238.1| dimethyladenosine transferase [Thermus scotoductus SA-01] Length = 272 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 142/272 (52%), Gaps = 19/272 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L + + K +GQNFL+ L++I E++ G V E+G G G LT+ L G Sbjct: 11 IRELLKRHGLFADKRLGQNFLVSEVHLRRIVEAAKPFTG-PVYEVGPGLGVLTRALAEAG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V IEKD + P+L++ P RL + DAL +E+ S ++ANLPYNI Sbjct: 70 A-QVTAIEKDLRLKPVLEETLKGLPVRL--VFADALAYPWEEVPENSL---LVANLPYNI 123 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+ + + L L QKEV ER+ A+ N+P YG LS+ + +A +FD Sbjct: 124 ATPLVTRLLRTGRF----ARLVFLVQKEVAERMVARPNTPSYGLLSLRVAYHAQAEKLFD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246 + P FFP PKV S+++ P P L L + AF KRRKTL+ +L G Sbjct: 180 LPPGAFFPPPKVVSSLVRLTPRKVPDDPALFQL---LEAAFSKRRKTLKNALTAAGYPKE 236 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L G+ ++RAE L + F R+ ++L Sbjct: 237 EVEEALRSLGLPPDIRAEALDLSHFQRLKDLL 268 >gi|325697392|gb|EGD39278.1| dimethyladenosine transferase [Streptococcus sanguinis SK160] Length = 290 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISS 117 T+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLTQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L ++ + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERSELSPSVRGEALSLEEFARLADAL 285 >gi|292670425|ref|ZP_06603851.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541] gi|292647835|gb|EFF65807.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541] Length = 292 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 145/275 (52%), Gaps = 14/275 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL+ +++ K +GQNFL+D+ +++ I E++ G TV+EIG G G LTQ L GAR Sbjct: 17 ILNAFRLRASKRLGQNFLIDVGVVRGIVEAAELAPGDTVLEIGPGIGTLTQGLAETGAR- 75 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIG 130 V+ +E D++ +L + + N + I+ D LK++ + + R + ANLPY I Sbjct: 76 VVAVEIDKKLPRVLAETLKGYDN-VTIVPGDILKLNIPEILGLKEGERFKVAANLPYYIT 134 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + P E L + QKEV R+TA+ S YG LS+ + T+ ++ D+ Sbjct: 135 TPIIMTLLE-QRLP--IERLVTMVQKEVAVRMTARPGSKDYGALSIAVQYFTEPRIVMDV 191 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 P F P+P+VTS V+ P P + ++ + AFG+RRK L +L G Sbjct: 192 PPRAFMPAPEVTSAVVACRVRETPAAAPADEKLFFRLIRAAFGQRRKMLLNALTGAGLTK 251 Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L AGI N R E LS+ DF R+++ + D Sbjct: 252 EMSRAGLSAAGIAENTRGEQLSLADFARLSDAVGD 286 >gi|194017982|ref|ZP_03056589.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061] gi|194010319|gb|EDW19894.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061] Length = 292 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + + D VIEIG G G LT+ L A Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV E DQ+ PIL D S + N + II D LK D E+ F + ++ANLP Sbjct: 71 KKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV +R+ A +S Y LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVADRMAAVPSSKEYNSLSIAVQYYTEAKT 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSL--- 241 + + VF P P V S VI P E ++ + +FG+RRKTL +L Sbjct: 187 VMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMNN 246 Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++ E L A I+ R E+LSIE+F R+ N+L Sbjct: 247 LPDGKQHKVIIEEALQTADIDGKRRGESLSIEEFARLANVL 287 >gi|33242431|ref|NP_877372.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183] gi|33236942|gb|AAP99029.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183] Length = 277 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 150/277 (54%), Gaps = 18/277 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + L LS + PKK + QNFL+D NI+KKI +S + V+EIG G G Sbjct: 1 MTRSSPAQ-LSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ GA+ VI IEKD F P L+++ P RLEII +D + + R Sbjct: 60 LTEELIAAGAQ-VIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYTTLGKGR 114 Query: 121 IIANLPYNIGTRLLFN-WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPY+I T LL ++ A P FW+++T++ Q EV RI AQ YG L++ Sbjct: 115 VVANLPYHITTPLLTKLFLEA---PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236 + F +S F+P P+V S VIH + +P E + +T+ AF +RRK Sbjct: 172 FFADIHYAFKVSASCFYPKPQVQSAVIH-MKVKETLPLSDEEIPVFFTLTRTAFQQRRKV 230 Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDF 269 L +LK L + + QA G+ N+R E LS+ D+ Sbjct: 231 LANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDY 267 >gi|81871169|sp|Q811P6|TFB1M_RAT RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|28569596|gb|AAO42744.1| mitochondrial transcription factor b1 [Rattus norvegicus] Length = 345 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ + + K + QNFLLDL + KI +GSL + V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F NI + Sbjct: 77 DIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + +F I F P P+V V+H +P + P I + ++K+ Q F R Sbjct: 197 SIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L E LL A I+ LR +LS+ F + ++ Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDV 306 >gi|312085629|ref|XP_003144755.1| ribosomal RNA adenine dimethylase [Loa loa] gi|307760083|gb|EFO19317.1| ribosomal RNA adenine dimethylase [Loa loa] Length = 342 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 151/297 (50%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SLK L Y++ KK + QN+L+D+N+ +KI + +G VIEIG GPG++T+ +L Sbjct: 13 SLKNFLYAYRLQAKKILSQNYLMDMNLTRKIVRQAVVKEGDYVIEIGPGPGSITRAILET 72 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-------- 120 R++ VIE D +F P L+ + R+ I + D LK + E+ ++ + R Sbjct: 73 NCRRLDVIEIDHRFIPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEEDRL 132 Query: 121 ----IIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 II NLP+NI + L+ ++ W L L FQ EV ER+ + +SP Sbjct: 133 PMAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRIPLLLTFQMEVAERLCSPVDSPFR 192 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 R+S+++ + T+ ++F I F PSPKV V+ FIP +P I E ++K+ + F Sbjct: 193 ARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFIPRQDPLIKTSFEVVEKVCRRVF 252 Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+K + + ++ L E +LL + I+ A L +E F I + ++ Sbjct: 253 NYRQKYVVKGIRSLYPEELAKNLADDLLRRCRIDPTTTAICLGVEQFADICYVYEEH 309 >gi|332522163|ref|ZP_08398415.1| dimethyladenosine transferase [Streptococcus porcinus str. Jelinkova 176] gi|332313427|gb|EGJ26412.1| dimethyladenosine transferase [Streptococcus porcinus str. Jelinkova 176] Length = 290 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 145/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +V+ E D + PIL D N +++I D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVINQDILKADLQTQIQGFENPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMVAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++ + F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G EN L AGI+ N+R E L+I +F ++ + L Sbjct: 245 FGKSEETKKKLENALELAGIKANIRGEALTIAEFGKLADAL 285 >gi|93006282|ref|YP_580719.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5] gi|119365050|sp|Q1QAR8|RSMA_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|92393960|gb|ABE75235.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5] Length = 287 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 145/277 (52%), Gaps = 13/277 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + S+ L K P+K GQNFL D +++++I ES +IEIG G G LT+ LL Sbjct: 8 AQSITNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLL 67 Query: 67 T-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIAN 124 + A V+ +++D ++ ++ HPN EII+++A+ VD+ + + + +R++ N Sbjct: 68 AEVDAMTVVELDRDLADSLRIRIGANSHPN-FEIIKNNAMHVDYRELYSDERGKLRVVGN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI T +LF+ +S + E + + QKEV ERITA S YGRLSV+ + Sbjct: 127 LPYNISTPILFHLLS---YADVIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHT 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242 + + F P PKVTS V PH + P+ E + +E F RRKTLR K Sbjct: 184 DYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRKTLRAIFK 243 Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274 + E+ I+ R E LS++DF ++N Sbjct: 244 KSTLLPTLSEDDFAACAIDPQARPETLSVKDFVNLSN 280 >gi|224538112|ref|ZP_03678651.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus DSM 14838] gi|224520240|gb|EEF89345.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus DSM 14838] Length = 271 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 12/259 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + G+ ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPGLPILEVGPGMGVLTQFLVR-KERPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L++ ++P+ LE II+DD LK++ ++ F+ P + N PYNI +++ F Sbjct: 63 DYESVAYLRE---EYPS-LEDNIIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P T + QKEV ERI A S YG LS+L + +F + HVF Sbjct: 118 MLDNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFN 174 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + C E L K++ + F +RRKTLR S+K + G++ + Sbjct: 175 PPPKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDV 234 Query: 256 ETNLRAENLSIEDFCRITN 274 N R E LS+++F +TN Sbjct: 235 LFNKRPEQLSVQEFISLTN 253 >gi|325955928|ref|YP_004286538.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Lactobacillus acidophilus 30SC] gi|325332493|gb|ADZ06401.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Lactobacillus acidophilus 30SC] gi|327182763|gb|AEA31210.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Lactobacillus amylovorus GRL 1118] Length = 294 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 20/280 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D + I ES+ G VIEIG G G+LT+ LL GA Sbjct: 14 RAIINRYFVKAKKNLGQNFLVDQAAILGIVESADIQPGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL K + R ++I D LK +FE+ FF++S PI+ Sbjct: 74 -KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAVFFDMSKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239 + ++ F P PKV S V+ P P + + + F +RRKTL Sbjct: 190 EMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLNN 249 Query: 240 SLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITN 274 +LK L +N L+ + G++ +R E+L+IE F +I + Sbjct: 250 NLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIAS 289 >gi|301169266|emb|CBW28863.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae 10810] Length = 287 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 151/288 (52%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL + ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116 + + L + V+E D+ L+ HP +L +I+ DA++ DF + + N++ Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGELYTKENLA 107 Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|261867179|ref|YP_003255101.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412511|gb|ACX81882.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 287 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 144/288 (50%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D N+++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + + V+E D+ L+ HP + +I+ DA++ DF E+ Sbjct: 53 EPVAE-QVEHLTVLELDRDLAERLR----HHPFLNQKFTVIETDAMQFDFSALYEQEQLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFH---YHHIIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPVPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR + L L GI+ N RAENLSI D+ R+ N L DN Sbjct: 225 QRRKTLRNAFSGLFSAGNLTALGIDLNARAENLSIADYARLANWLADN 272 >gi|326319524|ref|YP_004237196.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376360|gb|ADX48629.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 253 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 133/260 (51%), Gaps = 14/260 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ LG V+ + Sbjct: 2 KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGRLTVVEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP-IRIIANLPYNIGTRLL 134 ++D L H +L++I+ D LKVDF N+ +P IRI+ NLPYNI T +L Sbjct: 62 DRD------LAQRLRGH-GQLDVIESDVLKVDFTAVAANLGTPRIRIVGNLPYNISTPIL 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + E + QKEV +R+ AQ + YGRLSV+ WR + + P Sbjct: 115 FHLLEHVD---VVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPES 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S V+ +PH P P L+++ Q AF +RRK LR +L R E Sbjct: 172 FDPPPRVDSAVVRMVPHATPAPVAPRLLEELVQVAFSQRRKLLRHTLGRW-LEARQFTGT 230 Query: 255 IETNLRAENLSIEDFCRITN 274 +T RAE + + D+ + Sbjct: 231 FDTQRRAEEVPVADYVALAQ 250 >gi|15618967|ref|NP_225253.1| dimethyladenosine transferase [Chlamydophila pneumoniae CWL029] gi|15836590|ref|NP_301114.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138] gi|16753057|ref|NP_445330.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39] gi|27151618|sp|Q9Z6K0|RSMA_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|4377394|gb|AAD19196.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029] gi|7189706|gb|AAF38590.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39] gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138] Length = 277 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 150/277 (54%), Gaps = 18/277 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + L LS + PKK + QNFL+D NI+KKI +S + V+EIG G G Sbjct: 1 MTRSSPAQ-LSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ GA +VI IEKD F P L+++ P RLEII +D + + R Sbjct: 60 LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114 Query: 121 IIANLPYNIGTRLLFN-WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPY+I T LL ++ A P FW+++T++ Q EV RI AQ YG L++ Sbjct: 115 VVANLPYHITTPLLTKLFLEA---PDFWKTVTVMVQDEVARRIVAQPGGRDYGSLTIFLQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236 + F +S F+P P+V S VIH + +P E + +T+ AF +RRK Sbjct: 172 FFADIHYAFKVSASCFYPKPQVQSAVIH-MKVKETLPLSDEEIPVFFTLTRTAFQQRRKV 230 Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDF 269 L +LK L + + QA G+ N+R E LS+ D+ Sbjct: 231 LANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDY 267 >gi|329117503|ref|ZP_08246220.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020] gi|326907908|gb|EGE54822.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020] Length = 290 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 150/283 (53%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL H+ KK GQNFL D NIL+KI +++ + VIEIG G G LT+ + A Sbjct: 10 RAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFIAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PILKD N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILKDTLRDFDN-VQLVNQDILKADLQTQIKAFKNPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I D+ PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--DSKIPFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMDAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + L ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRRDQPLVAVQDEDFLFRVSKASFVHRRKTLWNNLTSH 244 Query: 245 GGE------NL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ NL L + I ++R E LSIE F ++ + L + Sbjct: 245 FGKTEEIKANLTKALEISEISPSIRGEALSIEQFGKLADALKE 287 >gi|167764963|ref|ZP_02437084.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC 43183] gi|167697632|gb|EDS14211.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC 43183] Length = 265 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 137/257 (53%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ LL R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPNLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F +S HVF P Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K++ + F +RRKTLR S+K + G+ Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDPLF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+++F +TN Sbjct: 237 NKRPEQLSVQEFIELTN 253 >gi|77412114|ref|ZP_00788438.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111] gi|77161821|gb|EAO72808.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111] Length = 290 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTE-FLAENA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL ++ N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILAGTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ AF RRKTL +L Sbjct: 185 SFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF + + L + Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|257880094|ref|ZP_05659747.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933] gi|257882326|ref|ZP_05661979.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502] gi|257885523|ref|ZP_05665176.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501] gi|257891185|ref|ZP_05670838.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410] gi|258614573|ref|ZP_05712343.1| dimethyladenosine transferase [Enterococcus faecium DO] gi|260560297|ref|ZP_05832473.1| dimethyladenosine transferase [Enterococcus faecium C68] gi|293563099|ref|ZP_06677565.1| dimethyladenosine transferase [Enterococcus faecium E1162] gi|293567525|ref|ZP_06678870.1| dimethyladenosine transferase [Enterococcus faecium E1071] gi|294623379|ref|ZP_06702238.1| dimethyladenosine transferase [Enterococcus faecium U0317] gi|314940231|ref|ZP_07847404.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04] gi|314941710|ref|ZP_07848589.1| dimethyladenosine transferase [Enterococcus faecium TX0133C] gi|314947646|ref|ZP_07851055.1| dimethyladenosine transferase [Enterococcus faecium TX0082] gi|314950632|ref|ZP_07853712.1| dimethyladenosine transferase [Enterococcus faecium TX0133A] gi|314992501|ref|ZP_07857922.1| dimethyladenosine transferase [Enterococcus faecium TX0133B] gi|314996345|ref|ZP_07861398.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01] gi|257814322|gb|EEV43080.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933] gi|257817984|gb|EEV45312.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502] gi|257821379|gb|EEV48509.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501] gi|257827545|gb|EEV54171.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410] gi|260073642|gb|EEW61968.1| dimethyladenosine transferase [Enterococcus faecium C68] gi|291589768|gb|EFF21571.1| dimethyladenosine transferase [Enterococcus faecium E1071] gi|291597226|gb|EFF28418.1| dimethyladenosine transferase [Enterococcus faecium U0317] gi|291605013|gb|EFF34481.1| dimethyladenosine transferase [Enterococcus faecium E1162] gi|313589488|gb|EFR68333.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01] gi|313592961|gb|EFR71806.1| dimethyladenosine transferase [Enterococcus faecium TX0133B] gi|313597179|gb|EFR76024.1| dimethyladenosine transferase [Enterococcus faecium TX0133A] gi|313599482|gb|EFR78325.1| dimethyladenosine transferase [Enterococcus faecium TX0133C] gi|313640551|gb|EFS05131.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04] gi|313645887|gb|EFS10467.1| dimethyladenosine transferase [Enterococcus faecium TX0082] Length = 294 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 153/284 (53%), Gaps = 20/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L A Sbjct: 14 KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAK-HA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E D + P+L D + N + I+ D LK D + F+ P++++ANLP Sbjct: 73 KQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + +A++ Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S ++ P + + ++T+ AF +RRKTL +L+ Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G++ L AGI+ R E LS+++F ++N +++N Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292 >gi|324989790|gb|EGC21733.1| dimethyladenosine transferase [Streptococcus sanguinis SK353] gi|325686620|gb|EGD28646.1| dimethyladenosine transferase [Streptococcus sanguinis SK72] Length = 290 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFLAE-SA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D N + ++ D LKVD ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRKTLWNNLTSC 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G++ L +A + ++R E LS+E+F R+ + L Sbjct: 245 FGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285 >gi|320530094|ref|ZP_08031164.1| dimethyladenosine transferase [Selenomonas artemidis F0399] gi|320137527|gb|EFW29439.1| dimethyladenosine transferase [Selenomonas artemidis F0399] Length = 291 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL+ + + K +GQNFL+D +++ I E++ TV+EIG G G LTQ L GAR Sbjct: 17 ILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGAR- 75 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIG 130 V+ +E D++ +L + + N + ++ D LK++ + + R ++ANLPY I Sbjct: 76 VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPYYIT 134 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + P E L + QKEV R+TAQ S YG LS+ + T M+ D+ Sbjct: 135 TPIIMTLLE-QRLP--IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMVMDV 191 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 P F P+P+VTS V+ I +P P + ++ + AFG+RRKTL +L G Sbjct: 192 PPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAGLTK 251 Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + L AGI + R E LS+EDF RI++ + D Sbjct: 252 DAAQAALRAAGIAGSTRGEQLSLEDFARISDAVGD 286 >gi|33519600|ref|NP_878432.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus] gi|62900575|sp|Q7VQK3|RSMA_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33517263|emb|CAD83647.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus] Length = 271 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/268 (36%), Positives = 144/268 (53%), Gaps = 15/268 (5%) Query: 16 HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +YK +I KK+ GQ FL D NI+ I VIEIG G G LT+ + + + Sbjct: 5 YYKNHVIQKKW-GQIFLKDQNIIHSIISILNLKKYQNVIEIGPGLGALTKPISDI-IDFL 62 Query: 74 IVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGT 131 I+IE+D +L +S+ +++I DA+ +DF K N + IR+I NLPYNI T Sbjct: 63 ILIERDPNLVNRLLHTFTSK---KVKIFNKDAMTIDFSKLLTNPNQKIRLIGNLPYNIST 119 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +L+ I + + + QKEV +RI AQ N+ YGRLS+ + K + ++ Sbjct: 120 KLI---IHLYKYINIIHDMHFMLQKEVAQRIVAQPNNKAYGRLSIFAQYYCKVQALLEVP 176 Query: 192 PHVFFPSPKVTSTVIHFIPHL--NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 F P PKV S ++ FIP+ NP P + L +T+ AF +RRK + SL L Sbjct: 177 KKSFIPIPKVESMIVQFIPYHTNNPYPTVNISLLSLLTKFAFHQRRKIIHNSLSSLLNST 236 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 + Q GI T RAENL+I+ FC++T IL Sbjct: 237 EIIQCGINTESRAENLTIQQFCKLTTIL 264 >gi|315635079|ref|ZP_07890359.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393] gi|315476200|gb|EFU66952.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393] Length = 287 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D N+++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQANQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS--- 116 + + + V+E D+ L+ HP +L +I+ DA++ DF + Sbjct: 53 EPVAE-QVEHLTVLELDRDLAERLR----HHPFLHQKLNVIETDAMQFDFSSLYEQEHLA 107 Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHHIIQDMHFMLQKEVVKRLCASPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHTTLPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L I+ N RAENLSI D+ R+ N L DN Sbjct: 225 QRRKTLRNALSGLFLPENLTALNIDLNARAENLSIADYARLANWLADN 272 >gi|62858143|ref|NP_001016494.1| dimethyladenosine transferase 1, mitochondrial [Xenopus (Silurana) tropicalis] gi|123893272|sp|Q28HM1|TFB1M_XENTR RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|89272950|emb|CAJ83142.1| transcription factor B1, mitochondrial [Xenopus (Silurana) tropicalis] gi|213624236|gb|AAI70821.1| transcription factor B1, mitochondrial [Xenopus (Silurana) tropicalis] gi|213624254|gb|AAI70849.1| transcription factor B1, mitochondrial [Xenopus (Silurana) tropicalis] Length = 346 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 147/296 (49%), Gaps = 23/296 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ + + +K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119 G +++V+EKD +F P LK ++ +++I+ D L ++ F ++ P + Sbjct: 77 GVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ AD PF +TL FQKEV ER+TA +S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ F I F P P+V V+HF P + P I + ++K+ + F R Sbjct: 197 SIMAQNLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVFQFR 256 Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RK + L E +L A ++ LR L++ F ++ N+ + D Sbjct: 257 RKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312 >gi|284803073|ref|YP_003414938.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578] gi|284996214|ref|YP_003417982.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923] gi|284058635|gb|ADB69576.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578] gi|284061681|gb|ADB72620.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923] Length = 295 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 149/286 (52%), Gaps = 29/286 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TTNE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239 A + F + VF P P V S VIH P+ E ++T+ +F +RRKTL Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244 Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E + L+ GI+ R E L I +F +++N L D Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|319775528|ref|YP_004138016.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3047] gi|329122429|ref|ZP_08251016.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116] gi|317450119|emb|CBY86333.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3047] gi|327473711|gb|EGF19130.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116] Length = 287 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL + ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113 + + L + V+E D+ L+ HP +L +I+ DA++ DF E Sbjct: 53 EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IPH P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ R+ N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|91227108|ref|ZP_01261592.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01] gi|254229739|ref|ZP_04923147.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|262392439|ref|YP_003284293.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|269964664|ref|ZP_06178902.1| dimethyladenosine transferase [Vibrio alginolyticus 40B] gi|91188760|gb|EAS75047.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01] gi|151937706|gb|EDN56556.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|262336033|gb|ACY49828.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|269830563|gb|EEZ84784.1| dimethyladenosine transferase [Vibrio alginolyticus 40B] Length = 269 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 15/264 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLR----THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ +P+ +PC + L+ ++ +E F +RRKT+R K L +L + G+ Sbjct: 184 PKVDSAVVRLVPY-EELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSTEVLEELGV 242 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 ++R ENL++E F + N L DN Sbjct: 243 NPSMRPENLTLEQFVAMANWLADN 266 >gi|325954121|ref|YP_004237781.1| ribosomal RNA small subunit methyltransferase A [Weeksella virosa DSM 16922] gi|323436739|gb|ADX67203.1| Ribosomal RNA small subunit methyltransferase A [Weeksella virosa DSM 16922] Length = 254 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 143/257 (55%), Gaps = 9/257 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK++GQ+FL D + +KIAE + V+EIG G G LT+ +L +K+ V+E Sbjct: 2 KVRAKKHLGQHFLNDEQVAQKIAEGLTWDNYQQVLEIGPGMGVLTKYILQ-ANKKISVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L++ L I ++D LK+DF +F + + ++ N PYNI ++++F Sbjct: 61 IDTESVAYLEENYVPFYPDLIIYEEDFLKMDFSRF---TDDLAVLGNFPYNISSQIIFKI 117 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + +FQKEV ERI A K S YG LSVL + +F +S +VF P Sbjct: 118 LEEKNKVP---EVVGMFQKEVAERIAAPKGSRVYGILSVLAQAFYQVDYLFTVSENVFTP 174 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + +P E L + + AF +RRKTLR +LK LG + + + + Sbjct: 175 PPKVKSGVIRMKRYRSTLPEVDEKLFFTVVKTAFNQRRKTLRNALKSLGIPDTMKENEL- 233 Query: 257 TNLRAENLSIEDFCRIT 273 NLRAE LS+EDF +T Sbjct: 234 LNLRAEQLSVEDFLELT 250 >gi|58336557|ref|YP_193142.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM] gi|227903108|ref|ZP_04020913.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796] gi|62900454|sp|Q5FMG3|RSMA_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58253874|gb|AAV42111.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM] gi|227869094|gb|EEJ76515.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796] Length = 294 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 149/281 (53%), Gaps = 24/281 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y + KK +GQNFL+D + + I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 KAIINRYFVKAKKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQHPN-RLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL K I Q N R +++ D LK DF+ FF++ PI+ Sbjct: 74 -KVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 133 VVANLPYYITTPIIFALSESDLH---FSSLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + ++ F P PKV S+V+ P L P +E+ K + + F +RRKTL Sbjct: 190 EMNVKIALEVKSTSFMPRPKVDSSVVVLTP-LQERP-KIENRKHFIWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L E L+ + G++ +R E+L+I+ F I Sbjct: 248 NNNLKALIPNAKEREALISKLGVDPRVRPEDLTIDQFIEIA 288 >gi|317126783|ref|YP_004093065.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522] gi|315471731|gb|ADU28334.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522] Length = 292 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 22/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D N+LK+I ++ VIEIG G G LT+ L A Sbjct: 13 KAILDKYGFSFKKSLGQNFLIDTNVLKRIVAAANVSQSTGVIEIGPGIGALTEQLAK-EA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 ++V+ E DQ+ PILK+ S + + +II D LK D +K F + + ++ANLP Sbjct: 72 KRVVAFEIDQRLLPILKETLSAYEH-TKIIHQDVLKADVQKVIKDEFEENEELAVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + + P ++ ++ QKEV ERI A+ NS +YG LS+ + A Sbjct: 131 YYVTTPILMKLLE-EKLP--VRTIVVMIQKEVAERIAAKPNSKNYGSLSIAAQYYADAET 187 Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLR------ 238 +F + VF P P V S ++ I PI E+ +I + +F +RRKT+ Sbjct: 188 VFTVPKTVFVPQPNVDSAILRLSIREKPPITVKDEAFFFEIIRASFAQRRKTILNNLAHH 247 Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +L + E +L I+ R E LS+E+F +L+DN Sbjct: 248 FSTLSKQTIEEILQSINIDPRRRGEALSMEEF----GVLSDN 285 >gi|326804008|ref|YP_004321826.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a] gi|326650269|gb|AEA00452.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a] Length = 294 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 148/284 (52%), Gaps = 24/284 (8%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL+ Y++ KK +GQNFL++ IL+K+ +++ VIEIG G G LT+ L A Sbjct: 14 AILNRYQLDAKKSLGQNFLMEPQILEKMVDAADIDQDTDVIEIGPGIGALTEFLCE-SAG 72 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPY 127 +V+ E D + P+L + H + L ++ D L+ D ++F S + ++ANLPY Sbjct: 73 RVLAFEVDDRLLPVL-EAELGHYDNLTVLHQDILEADLNASVSQYFPDSKRLAVVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++F+++ +D L+ Q EV ER+TAQ + Y L+++ + ++ + Sbjct: 132 YITTPIIFHFLESDLE---VSDFALMMQYEVAERLTAQAGTKAYSALTIVLNYYCQSEIA 188 Query: 188 FDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + VF P PKV S V+H P + P L K+ + AF RRKTL +LK Sbjct: 189 VKVPKTVFKPRPKVDSAVLHLKRRQAPPVKPQNEAL--FFKVVKGAFAHRRKTLWNNLKS 246 Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L E + AGI+ +RAE L+IEDF +++ L + Sbjct: 247 LFAGQYQEPSDLEAAIEAAGIDPKVRAEQLTIEDFSHLSDALNE 290 >gi|149182822|ref|ZP_01861284.1| dimethyladenosine transferase [Bacillus sp. SG-1] gi|148849489|gb|EDL63677.1| dimethyladenosine transferase [Bacillus sp. SG-1] Length = 292 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 146/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL+ I E +G + IEIG G G LT+ L A Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDPNILRNITEYAGLTEKTAAIEIGPGIGALTEH-LARTA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 KV+ E DQ+ PIL D S + N + I+ +D LK D EK I ++ANLP Sbjct: 71 GKVLAFEIDQRLLPILADTLSPY-NNITIVNEDVLKADVQEMIEKELADYEDIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ ++ + P + + ++ QKEVG+RI A+ + YG LS+ + T A Sbjct: 130 YYVTTPIILKLLT-EGLP--IKGICVMLQKEVGDRIAAKPGTKEYGSLSIAIQYYTTAET 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241 + + VF P P V S VI + P + K+T+ +F +RRKT+ +L Sbjct: 187 VMIVPKTVFMPQPNVDSAVIRLMKRDKPAAEVDDEDFFFKVTRASFAQRRKTILNNLTSQ 246 Query: 242 ----KRLGGENL--LHQAGIETNLRAENLSIEDFCRITNIL 276 K+ E L L +AG++ R E LSI++F ++N L Sbjct: 247 LPDGKQKKEEILASLEKAGVDPGRRGETLSIQEFALLSNEL 287 >gi|154498148|ref|ZP_02036526.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC 29799] gi|150273138|gb|EDN00295.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC 29799] Length = 290 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 146/289 (50%), Gaps = 32/289 (11%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + +K +L + K MGQNFL++ ++ + IA +SG+ V+EIG G G LT L Sbjct: 7 NDIKALLGRHGFRFSKSMGQNFLIEDHVPRDIAAASGADKDCGVLEIGPGIGPLTVRLAE 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRII 122 R V+ +E D+ P+L + + N +EI+ D +K+D EK + P+ Sbjct: 67 RAGR-VVSVELDKALLPVLAETLAGRDN-VEIVPGDIMKLDIPALVAEKMDGLK-PL-AC 122 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYNI T +L I A + +++T++ Q+EV RI A S YG SV + T Sbjct: 123 ANLPYNITTPVLTALIEAGCF----QAITVMIQREVALRICAAPGSGDYGAFSVYCQYHT 178 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------KITQEAFGKRRKT 236 ++FD+ P F P+PKVTS+VI +P P E +K ++ + AF +RRKT Sbjct: 179 TPELLFDVPPECFIPAPKVTSSVIRLVPRPAP-----EEVKDEKQFFRLVRAAFAQRRKT 233 Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILT 277 L +L G L + G+ ++R E L I +F + + L Sbjct: 234 LLNALSSAYGSQLSKDELRDAIAACGLPADVRGERLGIPEFAALADALA 282 >gi|328676628|gb|AEB27498.1| Dimethyladenosine transferase [Francisella cf. novicida Fx1] Length = 262 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + VIEIG G G LT+ LL+ + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDANVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|157690824|ref|YP_001485286.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032] gi|166987691|sp|A8F909|RSMA_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157679582|gb|ABV60726.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032] Length = 292 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 143/281 (50%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + + D VIEIG G G LT+ L A Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV E DQ+ PIL D S + N + II D LK D E+ F + ++ANLP Sbjct: 71 KKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV +R+ A +S Y LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVADRMAAIPSSKEYNSLSIAVQYYTEAKT 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S VI P E ++ + +FG+RRKTL +L Sbjct: 187 VMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMNN 246 Query: 245 GGENLLHQAGIETNL---------RAENLSIEDFCRITNIL 276 + H+A IE L R E+LSIE+F R++N+L Sbjct: 247 LPDGKQHKAIIEEALQTADIDGKRRGESLSIEEFARLSNVL 287 >gi|223044398|ref|ZP_03614431.1| dimethyladenosine transferase [Staphylococcus capitis SK14] gi|222442187|gb|EEE48299.1| dimethyladenosine transferase [Staphylococcus capitis SK14] Length = 296 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 145/277 (52%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ KI ++S D VIE+G G G+LT+ L A Sbjct: 13 RALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLAK-NA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLP 126 +KV+ E DQ+ P+L+D + + N + II +D LK + K + I ++ANLP Sbjct: 72 KKVMSFEIDQRLIPVLEDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A + YG LS++ + T+ + Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQREEPLVQVDNEEAFFKLAKAAFAQRRKTINNNYQNF 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRI 272 + N L A I+ R E L+I+DF + Sbjct: 248 FKDGKKHKASILNWLESAEIDPKRRGETLTIQDFANL 284 >gi|118497159|ref|YP_898209.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida U112] gi|194323457|ref|ZP_03057234.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida FTE] gi|166221666|sp|A0Q5E0|RSMA_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118423065|gb|ABK89455.1| dimethyladenosine transferase [Francisella novicida U112] gi|194322312|gb|EDX19793.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida FTE] Length = 262 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + VIEIG G G LT+ LL+ + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|28897110|ref|NP_796715.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD 2210633] gi|153838977|ref|ZP_01991644.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810] gi|260361684|ref|ZP_05774711.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030] gi|260878023|ref|ZP_05890378.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034] gi|260896918|ref|ZP_05905414.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466] gi|260903390|ref|ZP_05911785.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037] gi|31340184|sp|Q87ST6|RSMA_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28805319|dbj|BAC58599.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD 2210633] gi|149747565|gb|EDM58497.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810] gi|308088709|gb|EFO38404.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466] gi|308090066|gb|EFO39761.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034] gi|308109049|gb|EFO46589.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037] gi|308115492|gb|EFO53032.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030] gi|328471908|gb|EGF42785.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio parahaemolyticus 10329] Length = 269 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 15/264 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ +P+ +PC + L+ ++ +E F +RRKT+R K L +L + G+ Sbjct: 184 PKVDSAVVRLVPY-EELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSAEVLEELGV 242 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 ++R ENL+++ F + N L DN Sbjct: 243 NPSMRPENLTLQQFVAMANWLADN 266 >gi|253998288|ref|YP_003050351.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4] gi|253984967|gb|ACT49824.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4] Length = 254 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/264 (36%), Positives = 140/264 (53%), Gaps = 15/264 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K + KK GQNFL D I+ + + ++EIG G G LTQ LL L V+ I Sbjct: 2 KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLENLHVVEI 61 Query: 77 EKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 ++D I+ + + P ++ I DALK DF +I+S +R++ NLPYNI T +LF Sbjct: 62 DRD-----IIAWMEKHYAPGKVTIHNIDALKFDFA---SIASRLRVVGNLPYNISTPILF 113 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + D + + + QKEV ER+ A+ +S YGRLSV+ + +F + P F Sbjct: 114 HLL--DNVDHIID-MHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAF 170 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S + +PH P P +L ++ AFG+RRKTLR +LK L + Sbjct: 171 DPAPKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEAL 230 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI++ RAENL + F I N L Sbjct: 231 GIDSQWRAENLPLSAFVSIANYLV 254 >gi|197118669|ref|YP_002139096.1| dimethyladenosine transferase [Geobacter bemidjiensis Bem] gi|197088029|gb|ACH39300.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase [Geobacter bemidjiensis Bem] Length = 275 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 148/278 (53%), Gaps = 17/278 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK GQNFL+D ++L +I ++E+G G G L+++L GAR + +E Sbjct: 3 KIRAKKEFGQNFLVDDSVLTRIVACVAPTKDDCILEVGPGRGALSRLLAESGAR-FLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLL 134 D++ P+LK + +PN +EI D L+VD + ++ ANLPYNI +++L Sbjct: 62 WDRELLPLLKAEFATNPN-VEIGHGDILRVDLPLLLGSRAEGKKWKVAANLPYNISSQVL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F ++ +E L L+ QKEVG+R+TA YG L+VL F + P Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177 Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ F+P P + E L +++ + AF +RRKTL SL+ G ++ Sbjct: 178 FRPVPKVDSAVLSFLPLSGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L ++GI+ R E LS+E+F +T L+ + +A Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFACLTRELSAGKTLA 275 >gi|325283380|ref|YP_004255921.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus proteolyticus MRP] gi|324315189|gb|ADY26304.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus proteolyticus MRP] Length = 282 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 149/273 (54%), Gaps = 18/273 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K +++ + I P K +GQNFL+D NIL+ IA++ G+ +G+ V+E+G G G LT+ L G Sbjct: 19 VKDLMARHGIRPTKSLGQNFLIDGNILRAIADAGGAAEGVRVLEVGPGLGVLTRELAERG 78 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V +EKDQ P+L++ + + I+ DAL+ D+ ++ + R+IANLPY I Sbjct: 79 A-QVTTLEKDQGLRPVLEETLAGL--DVNIVWGDALEFDYA---SLPAGTRVIANLPYYI 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LL ++ A P S T+L QKEV +R+ +Q +YG L+ L + D Sbjct: 133 TGPLLSRFMRA----PSIVSATVLVQKEVAQRLASQPGDDNYGFLTALAHLYGTVRPVRD 188 Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 + F P+P VTS+V+ P P E+ ++ A RRKTLR +LK G Sbjct: 189 VPKGSFIPAPAVTSSVVRLDFDRERPQPS--EAYIRLIDAALHHRRKTLRNNLKMAGHPV 246 Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L AG+ ++RAE++ + ++ + L Sbjct: 247 DRIEAALEAAGLRPDVRAEDVPLAQMRQLADAL 279 >gi|295694738|ref|YP_003587976.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912] gi|295410340|gb|ADG04832.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912] Length = 293 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 18/283 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S +L Y PKK +GQ+FL+D IL++I ++ V+EIG G G LT + L Sbjct: 10 SAAELLRRYAFHPKKSLGQHFLVDDRILERIVAAADLSGREAVLEIGPGLGALT-LRLAQ 68 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIAN 124 A +V+ +EKD+ P+L ++ N +++ D L+VD E+ F + +R++AN Sbjct: 69 AAWRVLAVEKDRSLQPVLSEVLRDFGN-VQVCWGDVLEVDLPRMCEEAFGPRT-VRVVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW-RTK 183 LPY + T ++ + P + + L+ Q+EV +R+TA+ + YG L+V W K Sbjct: 127 LPYYVTTPVMMKLLEEG---PVMDRMVLMVQREVADRLTARPGTKTYGALTVAVQWFAEK 183 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK- 242 + + F+P P+V S V+ P P L ++ + FG+RRKTL +L Sbjct: 184 VESVARVPASCFWPRPEVDSVVVRLDLRPRPDPEVTRRLSRVVRAGFGQRRKTLLNALSH 243 Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R E L A + + RAE LS+E+F R+ L D Sbjct: 244 ALAGRDRASIEQALRHARVAPDRRAETLSLEEFTRLAQALADG 286 >gi|260582745|ref|ZP_05850532.1| dimethyladenosine transferase [Haemophilus influenzae NT127] gi|260094195|gb|EEW78096.1| dimethyladenosine transferase [Haemophilus influenzae NT127] Length = 287 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 149/288 (51%), Gaps = 27/288 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H L H +K GQNFL D ++++ I + ++EIG G G LT Sbjct: 1 MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117 + + L + V+E D+ L+ HP +L +I+ DA++ DF++ + + Sbjct: 53 EPVGEL-VEHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R+ NLPYNI T L+F+ + + + + QKEV +R+ A NS YGR Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231 L+++ + + + ++ P F P+PKV S V+ IP+ P P L L ++ +AF Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPNKELPHPVKDLYWLNRVCSQAFN 224 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTLR +L L L GI+ N RAENL+I D+ + N L DN Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYAHLANWLADN 272 >gi|253752653|ref|YP_003025794.1| dimethyladenosine transferase [Streptococcus suis SC84] gi|253754479|ref|YP_003027620.1| dimethyladenosine transferase [Streptococcus suis P1/7] gi|253756412|ref|YP_003029552.1| dimethyladenosine transferase [Streptococcus suis BM407] gi|251816942|emb|CAZ52591.1| dimethyladenosine transferase [Streptococcus suis SC84] gi|251818876|emb|CAZ56719.1| dimethyladenosine transferase [Streptococcus suis BM407] gi|251820725|emb|CAR47487.1| dimethyladenosine transferase [Streptococcus suis P1/7] Length = 290 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D + N + ++ D LK D + F N PI+++ANLP Sbjct: 69 AEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTSILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ L A +E ++R E LS+ DF R+++ L + Sbjct: 245 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|189425372|ref|YP_001952549.1| dimethyladenosine transferase [Geobacter lovleyi SZ] gi|189421631|gb|ACD96029.1| dimethyladenosine transferase [Geobacter lovleyi SZ] Length = 271 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 146/266 (54%), Gaps = 16/266 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQNFL D NI++KI ++ V+E+G G G LT+ LL AR ++ +E D+ Sbjct: 8 PRKALGQNFLSDHNIIRKILTTAHLQPTDRVLEVGPGRGALTE-LLAAQARHLVAVEFDR 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +L++ + P + I + D L+VDFE+ S +++ANLPYNI T +LF ++ Sbjct: 67 DLAALLRERFAGQPQVM-IHEQDILQVDFEQLLG-SHTYKVVANLPYNISTPVLFRFLEE 124 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + L ++ QKEVGER+ AQ + YG L+VL + F + P FFP PK Sbjct: 125 RQR---FSRLVVMLQKEVGERLAAQPDCSDYGILTVLFRQWFEVKREFLVPPGCFFPPPK 181 Query: 201 VTSTVIHFIPHL-NPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG-------ENLLH 251 V S VI P + + + ++L +++ + AFG RRKTL LK GG E LL Sbjct: 182 VDSVVISLTPLVASRVEVGNQALFERLVKAAFGMRRKTLWNCLKS-GGLAEPEQLEQLLL 240 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 I+ R E L+IE+F ++ L+ Sbjct: 241 SCSIDGRRRGETLAIEEFALLSRTLS 266 >gi|330448803|ref|ZP_08312450.1| dimethyladenosine transferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492994|dbj|GAA06947.1| dimethyladenosine transferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 274 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 137/263 (52%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + L G ++EIG G G +T+ + L K VIE D+ Sbjct: 13 RKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTVIELDRD 71 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I Q DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 72 LAERLEN----HPDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHIF 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A S YGRL+V+ + + + ++ P F P+ Sbjct: 128 E---FHKDVQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESFVPA 184 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L GI Sbjct: 185 PKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEALGIN 244 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 + R EN+++E F + N L N Sbjct: 245 PSHRPENITVEQFVAMANWLDAN 267 >gi|167760646|ref|ZP_02432773.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704] gi|167661771|gb|EDS05901.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704] Length = 291 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 154/289 (53%), Gaps = 21/289 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ IL Y+ +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTIE-ILQKYQFTFQKKFGQNFLIDTHVLDKIIRAADIGKDDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KVI +E D+ PIL D S + N ++II +D LK+D ++ N P Sbjct: 64 TQYLAE-AAGKVIAVEIDKNLIPILTDTLSGYEN-VQIINEDVLKLDIQRLVEEENAGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + P + S+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHV--PLY-SVTVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI + P P +E L I + +F +RRK Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRYEKP-PVEVEDERLLFDIIRASFNQRRK 237 Query: 236 TL--------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL R + + + Q G ++R E L++E+F +++N L Sbjct: 238 TLANGLNNSDRLDVPKEAITEAIQQLGKGPSVRGETLTLEEFAKLSNSL 286 >gi|283797637|ref|ZP_06346790.1| dimethyladenosine transferase [Clostridium sp. M62/1] gi|291074750|gb|EFE12114.1| dimethyladenosine transferase [Clostridium sp. M62/1] Length = 310 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 20/280 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D+++L KI ++G V+EIG G G +TQ L A++ Sbjct: 37 IIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE-SAKQ 95 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 V+ +E D PIL + + + N + +I D LKVD +K +N PI+++ANLPY I Sbjct: 96 VVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPIKVVANLPYYI 154 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +++T++ QKEV +R+ S YG LS+ + + ++ + Sbjct: 155 TTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYAEPYIVAN 211 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243 + P+ F P P V S VI H P P +++ + K+ + +F +RRKTL L Sbjct: 212 VPPNCFIPRPNVGSAVIRLTRHKKP-PVEVKNRDLMFKLIRASFNQRRKTLLNGLNNSPE 270 Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 +G E + + Q G+ ++R E L++E F R++++L + Sbjct: 271 IPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310 >gi|315656078|ref|ZP_07908969.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493080|gb|EFU82680.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 309 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 150/297 (50%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV----DFEKFFNISSPI 119 LG KVI IE DQ+ L +QH L ++ DAL++ D E ++P Sbjct: 66 ELGC-KVIAIEIDQRLATALPVTVAQHGANSADLCVMTQDALEIAGEADLELPTGWAAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP-----------HLNPIPCCLESLKKITQE 228 W +A F + +VF+P P V STV+ F L+ E+++ + QE Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241 Query: 229 -------AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 AF +RRKTLRQSL G NLL AGI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298 >gi|270290912|ref|ZP_06197136.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4] gi|304386409|ref|ZP_07368742.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284] gi|270280972|gb|EFA26806.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4] gi|304327766|gb|EFL94993.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284] Length = 297 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 149/279 (53%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y + KK +GQNFL D N+L I +++ DG VIE+G G G+LT+ + A Sbjct: 14 RAILEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPGIGSLTEQIAK-RA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +V+ E DQ P+L + + + N + II +D LKV+ + F+ PI+++ANLP Sbjct: 73 HQVLAFEIDQNLIPVLDETLAPYDN-ITIINEDVLKVNVNEVVAEHFDGQHPIKLVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L +++ A + P + ++ QKEV +R+TAQ YG LSV+ +R + + Sbjct: 132 YYITTPILKSFM-ASSLP--IAKMVVMMQKEVADRLTAQPGDKEYGSLSVVVQYRMQTQV 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLN-PI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P PKV S ++ P + P+ P K F RRK L +++ L Sbjct: 189 EFTVPARVFVPQPKVDSAIVSLTPRKDWPVYPADDRDFFKTVHGCFMHRRKNLWNNMQGL 248 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITN 274 G +++L + I+ ++R E L++ DF + N Sbjct: 249 YGKAPETKEKIQSVLDELEIDPHIRPERLTVVDFINLHN 287 >gi|146319655|ref|YP_001199367.1| dimethyladenosine transferase [Streptococcus suis 05ZYH33] gi|146321852|ref|YP_001201563.1| dimethyladenosine transferase [Streptococcus suis 98HAH33] gi|145690461|gb|ABP90967.1| Dimethyladenosine transferase [Streptococcus suis 05ZYH33] gi|145692658|gb|ABP93163.1| Dimethyladenosine transferase [Streptococcus suis 98HAH33] gi|292559272|gb|ADE32273.1| Dimethyladenosine transferase [Streptococcus suis GZ1] Length = 302 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 22 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTE-FLAENA 80 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D + N + ++ D LK D + F N PI+++ANLP Sbjct: 81 AEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 139 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 140 YYITTSILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 196 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 197 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 256 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ L A +E ++R E LS+ DF R+++ L + Sbjct: 257 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 299 >gi|332360011|gb|EGJ37825.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056] Length = 290 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M HS+ + IL + KK GQNFL D NIL+KI +++ + VIEIG G G L Sbjct: 1 MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117 T+ L A +V+ E D + PIL D N + ++ D LKV+ ++ N Sbjct: 61 TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPDL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + A + F + VF P+P V S ++ + P + K+++ +F RRK Sbjct: 176 VQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRK 235 Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L G++ L +A + ++R E LS+E+F R+ + L Sbjct: 236 TLWNNLTSYFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285 >gi|311085884|gb|ADP65966.1| dimethyladenosine transferase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 308 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 36 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 85 LTKPMCEL-LEELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141 Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 RI NLPYNI T L LF I + + + QKEV ER+ + + YGRLS+ Sbjct: 142 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 195 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234 ++ + ++ ++SP F P PKV S I+ PH N + L IT++AF RR Sbjct: 196 ISQYYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 255 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K LR SLK L E L + I +NLRAEN+S+ +C++ N L Sbjct: 256 KILRHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYL 297 >gi|219682072|ref|YP_002468456.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621805|gb|ACL29961.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 273 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 1 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 50 LTKPMCEL-LEELIVIEIDQDLLFLLKKRSFY--SKLIVFYQNALSFNFLNLFHKKKQLI 106 Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 RI NLPYNI T L LF I + + + QKEV ER+ + + YGRLS+ Sbjct: 107 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 160 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234 ++ + ++ ++SP F P PKV S I+ PH N + L IT++AF RR Sbjct: 161 ISQYYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 220 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K LR SLK L E L + I +NLRAEN+S+ +C++ N L Sbjct: 221 KILRHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYL 262 >gi|261208234|ref|ZP_05922907.1| dimethyladenosine transferase [Enterococcus faecium TC 6] gi|289565965|ref|ZP_06446404.1| dimethyladenosine transferase [Enterococcus faecium D344SRF] gi|294615973|ref|ZP_06695800.1| dimethyladenosine transferase [Enterococcus faecium E1636] gi|294617634|ref|ZP_06697262.1| dimethyladenosine transferase [Enterococcus faecium E1679] gi|260077491|gb|EEW65209.1| dimethyladenosine transferase [Enterococcus faecium TC 6] gi|289162249|gb|EFD10110.1| dimethyladenosine transferase [Enterococcus faecium D344SRF] gi|291591159|gb|EFF22841.1| dimethyladenosine transferase [Enterococcus faecium E1636] gi|291596098|gb|EFF27363.1| dimethyladenosine transferase [Enterococcus faecium E1679] Length = 294 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 152/284 (53%), Gaps = 20/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L A Sbjct: 14 KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAK-HA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E D + P+L D + N + I+ D LK D + F+ P++++ANLP Sbjct: 73 KQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + +A + Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEANL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S ++ P + + ++T+ AF +RRKTL +L+ Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G++ L AGI+ R E LS+++F ++N +++N Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292 >gi|163855067|ref|YP_001629365.1| dimethyladenosine transferase [Bordetella petrii DSM 12804] gi|226729759|sp|A9I5F2|RSMA_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|163258795|emb|CAP41094.1| dimethyladenosine transferase [Bordetella petrii] Length = 262 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 135/260 (51%), Gaps = 17/260 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D ++++ I + G V+EIG G LTQ LL G + V+E D+ Sbjct: 7 RKRFGQHFLTDDSVVEAIVRAIAPARGDRVVEIGPGLSALTQPLLR-GLDHLTVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA- 140 L++ + P RL +I+ DAL VDF ++ +R++ NLPYNI + LLF+ ++A Sbjct: 66 LAARLRN--AHAPGRLTVIEADALTVDFA---SLGERLRVVGNLPYNISSPLLFHLMAAA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 DT + Q+EV +R+ A S YGRLSV+ R + +FD+ P F P P+ Sbjct: 121 DTV----RDQHFMLQREVIDRMVAAPGSADYGRLSVMLQSRYRMDKLFDVPPEAFDPPPR 176 Query: 201 VTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 V S V+ +P L P +L+ + AF +RRK LR+ L I Sbjct: 177 VVSAVVRMVPLPADRLR--PASEAALQAVVARAFAQRRKMLRRGLGDWAALVPWDALDIA 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE +S+E F R+T+ L Sbjct: 235 PTARAEEISVEKFIRLTDAL 254 >gi|325510393|gb|ADZ22029.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018] Length = 287 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 12/276 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ Y K +GQNFL D +L I E++ +IEIG G G LT+ L Sbjct: 13 KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 72 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A+KV IE D+ PI+ + ++ N +I +DALKVDF ++++ANL Sbjct: 73 LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ ++SLT++ QKEVG+RI A+ ++ YG L++L + Sbjct: 131 PYYVTTPIISKLLNEGYN---FKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLK- 242 ++ + P F P PKV S VI P + E L + + AF RRKTL ++K Sbjct: 188 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 247 Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITN 274 +L E+L AGI++ R E LSIE+F ++++ Sbjct: 248 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSD 283 >gi|255657480|ref|ZP_05402889.1| dimethyladenosine transferase [Clostridium difficile QCD-23m63] gi|296449075|ref|ZP_06890865.1| dimethyladenosine transferase [Clostridium difficile NAP08] gi|296879898|ref|ZP_06903871.1| dimethyladenosine transferase [Clostridium difficile NAP07] gi|296262168|gb|EFH08973.1| dimethyladenosine transferase [Clostridium difficile NAP08] gi|296429187|gb|EFH15061.1| dimethyladenosine transferase [Clostridium difficile NAP07] Length = 289 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ K ++ Y K +GQNFL+D NI+ KI + G +IE+G G G LT+ + Sbjct: 8 NATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITGGDNIIEVGPGIGTLTREMGK 67 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIAN 124 + A KV+ IE D+ PILKD S N E++ D LKVD ++ P++++AN Sbjct: 68 I-AEKVVAIEIDRNLIPILKDTLSDLEN-TEVVNQDILKVDIQELVKDKLNGGPVKLVAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T ++ ++ D P + + ++ QKEV +R+ A + YG LS+ + Sbjct: 126 LPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAIPGTKDYGALSIAVQYYCDT 182 Query: 185 TMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ H+F P P V STVI H E K + +FG+RRKTL SL Sbjct: 183 EIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEEIFFKTVKASFGQRRKTLLNSLG 242 Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 LG N +L +A I+ R E LSIE+F ++NI+ Sbjct: 243 GLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282 >gi|241248269|ref|XP_002402915.1| dimethyladenosine transferase, putative [Ixodes scapularis] gi|215496424|gb|EEC06064.1| dimethyladenosine transferase, putative [Ixodes scapularis] Length = 382 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 144/291 (49%), Gaps = 26/291 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ +L Y+I + + QNFL+D + +++ +++G + VIE+G GPG LT+ LL L Sbjct: 73 TVRDLLRMYRIRAMRQLSQNFLMDPKLTRRLVKAAGKIRDHHVIEVGPGPGCLTRPLLEL 132 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 GAR+V+VIEKD +F P L+ ++ NRL+II D E P+ Sbjct: 133 GARQVVVIEKDPRFLPSLQLLAEAADNRLKIIMGDVFNYSMEDLIPQELGVPWEGPPPPV 192 Query: 120 RIIANLPYNIGTRLLFNWI--SADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRL 174 ++ NLP+++ T LL W+ ++ PF LTL FQKEV ERI A RL Sbjct: 193 HVVGNLPFSVSTPLLVRWLRMASQRKGPFLHGRVPLTLTFQKEVAERIVAPVMHVQRCRL 252 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFG 231 SV+ +S FFP P V V+ +P + P+ P + ++K+ F Sbjct: 253 SVMCQAYCSVQHQLTLSGGSFFPKPDVDVGVVRLVPLVEPVIQQP--FDLVEKVCNCLFN 310 Query: 232 KRRKTLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNI 275 R+K L LK L ++L+ I+ R L++E+ RI + Sbjct: 311 GRQKYLSNGLKNLFPSRHLDLAKDLVKLVEIDPQTRVVQLTVEEVGRICQV 361 >gi|15896238|ref|NP_349587.1| dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824] gi|27151592|sp|Q97EX0|RSMA_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15026041|gb|AAK80927.1|AE007795_6 Dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824] Length = 276 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 12/276 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ Y K +GQNFL D +L I E++ +IEIG G G LT+ L Sbjct: 2 KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A+KV IE D+ PI+ + ++ N +I +DALKVDF ++++ANL Sbjct: 62 LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 119 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ ++SLT++ QKEVG+RI A+ ++ YG L++L + Sbjct: 120 PYYVTTPIISKLLNEGYN---FKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 176 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLK- 242 ++ + P F P PKV S VI P + E L + + AF RRKTL ++K Sbjct: 177 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 236 Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITN 274 +L E+L AGI++ R E LSIE+F ++++ Sbjct: 237 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSD 272 >gi|315037470|ref|YP_004031038.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112] gi|312275603|gb|ADQ58243.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112] Length = 294 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 20/280 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D + I ES+ G VIEIG G G+LT+ LL GA Sbjct: 14 RAIINRYFVKAKKNLGQNFLVDQAAILGIVESAYIQPGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL K + R ++I D LK +FE+ FF++S PI+ Sbjct: 74 -KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAGFFDMSKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239 + ++ F P PKV S V+ P P + + + F +RRKTL Sbjct: 190 EMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLNN 249 Query: 240 SLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITN 274 +LK L +N L+ + G++ +R E+L+IE F +I + Sbjct: 250 NLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIAS 289 >gi|295089979|emb|CBK76086.1| dimethyladenosine transferase [Clostridium cf. saccharolyticum K10] Length = 310 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 20/280 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D+++L KI ++G V+EIG G G +TQ L A++ Sbjct: 37 IIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE-SAKQ 95 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 V+ +E D PIL + + + N + +I D LKVD +K +N PI+++ANLPY I Sbjct: 96 VVAVEIDTNLIPILSETLAVYDN-VTVINQDILKVDIKKLAEEYNGGRPIKVVANLPYYI 154 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +++T++ QKEV +R+ S YG LS+ + + ++ + Sbjct: 155 TTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYAEPYIVAN 211 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243 + P+ F P P V S VI H P P +++ + K+ + +F +RRKTL L Sbjct: 212 VPPNCFIPRPNVGSAVIRLTRHKKP-PVEVKNRDLMFKLIRASFNQRRKTLLNGLNNSPE 270 Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 +G E + + Q G+ ++R E L++E F R++++L + Sbjct: 271 IPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310 >gi|208778952|ref|ZP_03246298.1| dimethyladenosine transferase [Francisella novicida FTG] gi|208744752|gb|EDZ91050.1| dimethyladenosine transferase [Francisella novicida FTG] Length = 262 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + VIEIG G G LT+ LL+ + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKRHDIVIEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|223934090|ref|ZP_03626038.1| dimethyladenosine transferase [Streptococcus suis 89/1591] gi|223897236|gb|EEF63649.1| dimethyladenosine transferase [Streptococcus suis 89/1591] Length = 290 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D + N + ++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ L A +E ++R E LS+ DF R+++ L + Sbjct: 245 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|323359389|ref|YP_004225785.1| dimethyladenosine transferase [Microbacterium testaceum StLB037] gi|323275760|dbj|BAJ75905.1| dimethyladenosine transferase [Microbacterium testaceum StLB037] Length = 279 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 23/282 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K +GQNF++D N ++KI + +G V+EIG G G+LT +L Sbjct: 8 AAEIRRLATELDVTPTKKLGQNFVVDANTVRKIVQVAGVSASDRVVEIGPGLGSLTLAIL 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 GA V+ +E D + L + ++ H RL +I DAL+VD P ++A Sbjct: 68 ETGA-SVVAVEIDHRLAARLPETAAAHEVPAERLMVIDADALRVDELP----GEPSVLVA 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L +++ +T+ P+ S ++ Q EVGER+ A S YG SV W Sbjct: 123 NLPYNVSVPVLLHFL--ETF-PYLRSGVVMVQAEVGERLAAPPGSKVYGAPSVKAAWYGS 179 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQ 239 + +S VF+P P V S ++ F + P E ++ I AF +RRK LRQ Sbjct: 180 WRLAGTVSRQVFWPVPNVDSVLVAF--DRDAEPRGTEEHRRRTFQIVDAAFQQRRKMLRQ 237 Query: 240 SLKR-LGGENL-----LHQAGIETNLRAENLSIEDFCRITNI 275 +L LGG L +AG++ LR E L+++D+ RI + Sbjct: 238 ALSGVLGGTAAEASARLERAGVDPTLRGEQLTVDDYARIAAL 279 >gi|302384604|ref|YP_003820426.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1] gi|302195232|gb|ADL02803.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1] Length = 289 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 151/293 (51%), Gaps = 19/293 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ I+ Y+ +K GQNFL+D ++L KI ++G V+EIG G G + Sbjct: 3 TLGNPQKTIE-IIQKYEFAFQKKFGQNFLIDTHVLDKIITAAGVTKDDCVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L AR V+ +E D PILK+ + + N + +I DD LKVD + +N P Sbjct: 62 TQYLAE-NARHVVAVEIDSNLIPILKETLTDYEN-VTVIHDDILKVDINQIAEQYNGGRP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +++T++ QKEV +R+ S YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFENNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI H P ++ + ++ + +F +RRKT Sbjct: 177 QYYAQPYIVANVPPNCFMPRPNVGSAVIRLTRHKEPAVKAEDAGLMFRLIRASFNQRRKT 236 Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L+ L R + G+ ++R E L++E F ++N T +D Sbjct: 237 LQNGLNNSPEIPYSREQIAEAVESLGLGPSIRGEALTLEQFASLSNYFTKMKD 289 >gi|73946166|ref|XP_533459.2| PREDICTED: similar to transcription factor B1, mitochondrial [Canis familiaris] Length = 345 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLHAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSP-------I 119 +++V+EKD +F P L+ +S P +L I+ D L E+ F + P + Sbjct: 77 NVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPEILKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W +S P + +TL FQKEV ER+TA S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + + I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SIMAQYLCNVQHILTIPGQAFVPKPEVDVGVVHFTPLVRPRIEQPFKLVEKVVQNTFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L + LL A ++ LR LS+ F + ++ Sbjct: 257 RKYCYRGLGMLFPQIHRVESTGKLLELADVDPTLRPSQLSVSHFKSLCDV 306 >gi|319759070|gb|ADV71012.1| dimethyladenosine transferase [Streptococcus suis JS14] Length = 290 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D + N + ++ D LK D + F N PI+++ANLP Sbjct: 69 GEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTSILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ L A +E ++R E LS+ DF R+++ L + Sbjct: 245 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|194227549|ref|XP_001493452.2| PREDICTED: similar to transcription factor B1, mitochondrial [Equus caballus] Length = 348 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 142/290 (48%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLHAVKQLSQNFLLDLRLTDKIVRKAGTLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 G +++V+EKD +F P L+ +S P +L I+ D L E+ F S P + Sbjct: 77 GVAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRHWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ + PF +TL FQKEV ER+TA S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSRRDGPFAYGRTQMTLTFQKEVAERLTATTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + + I F P P+V V+ F P P I + ++K+ Q F R Sbjct: 197 SIMAQYLCSVQHVLTIPGRAFVPKPEVDVGVVRFTPLTQPRIEQPFQLVEKVVQNVFQFR 256 Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275 RK + L L E LL A ++ LR LS+ F + ++ Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGKLLQLADVDPTLRPSQLSVSHFKSLCDV 306 >gi|310639501|ref|YP_003944259.1| ribosomal RNA small subunit methyltransferase a [Paenibacillus polymyxa SC2] gi|309244451|gb|ADO54018.1| Ribosomal RNA small subunit methyltransferase A [Paenibacillus polymyxa SC2] Length = 294 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 147/282 (52%), Gaps = 19/282 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ + KK +GQNFL+D NIL KI ++G D +EIG G G LT+ L A Sbjct: 14 KEIIQRHGFSFKKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLAQ-SA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126 + V +E DQ+ PIL+++ + + +++ D LK+D + F S + ++ANLP Sbjct: 73 KAVTAVEIDQRLLPILEEVLAPY-EHVKVRHGDVLKLDLREVFAADFADVSKVSVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + D P E++ ++ QKEV ER+ A + YG LS+ + ++ + Sbjct: 132 YYVTTPILMRLLE-DKLP--LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYSEPEL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK-- 242 + + VF P P V S VI P ++ ++ AF +RRKT+ +LK Sbjct: 189 VCTVPNTVFIPQPNVDSAVIRLRVREVPPVEVVDEKHFFEVVHAAFAQRRKTISNNLKSR 248 Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R E LL QA IE + R E LSIE+F R++ +L + Sbjct: 249 FFTKENRDTLEPLLQQADIEPSRRGETLSIEEFARLSAVLLE 290 >gi|301299614|ref|ZP_07205875.1| dimethyladenosine transferase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852801|gb|EFK80424.1| dimethyladenosine transferase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 297 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y + KK +GQNFL D+NILK I ++ + VIEIG G G LT+ L A Sbjct: 16 RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAK-RA 74 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 KV+ +E D + P+L D S + N +E+I D LK D E F ++++ANLP Sbjct: 75 NKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHKLKLVANLP 133 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + + + +E++ ++ QKEV ER+ A + YG LSV + + + Sbjct: 134 YYITTPILMHLLDSGIE---FETIVVMMQKEVAERLAANSGTKAYGSLSVAVQYEMDSEI 190 Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S +I + P P + KK+ + +F RRK+L +L+ L Sbjct: 191 AFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKSLWNNLQSL 250 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G++ L A I+ ++RAE L++ DF +++ L Sbjct: 251 YGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDAL 291 >gi|89256872|ref|YP_514234.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica LVS] gi|115315251|ref|YP_763974.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica OSU18] gi|134302453|ref|YP_001122423.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis WY96-3418] gi|156503047|ref|YP_001429112.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009234|ref|ZP_02274165.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FSC200] gi|187932059|ref|YP_001892044.1| dimethyladenosine transferase [Francisella tularensis subsp. mediasiatica FSC147] gi|254368148|ref|ZP_04984168.1| dimethyladenosine transferase, kasugamycin resistance [Francisella tularensis subsp. holarctica 257] gi|254369747|ref|ZP_04985757.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FSC022] gi|290953903|ref|ZP_06558524.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica URFT1] gi|295312728|ref|ZP_06803470.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica URFT1] gi|119365026|sp|Q2A218|RSMA_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122324752|sp|Q0BKP7|RSMA_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221665|sp|A7NDV3|RSMA_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221667|sp|A4IZF1|RSMA_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732583|sp|B2SDQ1|RSMA_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89144703|emb|CAJ80034.1| dimethyladenosine transferase , kasugamycin resistance [Francisella tularensis subsp. holarctica LVS] gi|115130150|gb|ABI83337.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica OSU18] gi|134050230|gb|ABO47301.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134253958|gb|EBA53052.1| dimethyladenosine transferase, kasugamycin resistance [Francisella tularensis subsp. holarctica 257] gi|156253650|gb|ABU62156.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122706|gb|EDO66835.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FSC022] gi|187712968|gb|ACD31265.1| dimethyladenosine transferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 262 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL+ + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|114609911|ref|XP_001143057.1| PREDICTED: transcription factor B1, mitochondrial isoform 1 [Pan troglodytes] Length = 288 Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 91/271 (33%), Positives = 136/271 (50%), Gaps = 19/271 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119 +++V+EKD +F P L+ +S P +L I+ D L EK F+ S P + Sbjct: 77 DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+ A S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + +F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256 Query: 234 RK----TLRQSLKRLGGENLLHQAGIETNLR 260 RK LR+ LKR +N + N R Sbjct: 257 RKYCHRGLREELKRRKSKNEEKEEDDAENYR 287 >gi|114564241|ref|YP_751755.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400] gi|122298930|sp|Q07YJ8|RSMA_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|114335534|gb|ABI72916.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400] Length = 268 Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 148/287 (51%), Gaps = 27/287 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D ++ I + + ++EIG G G LT Sbjct: 1 MSNKVH-----LGHTA---RKRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 + + + + V+E D+ Q+ P+LKD +L I Q DAL+ DF + Sbjct: 53 EPVADM-IDNLTVVELDRDLVKRLQYHPVLKD-------KLTIHQGDALQFDFGQLQQPG 104 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTV 161 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPC-CLESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S VI +P + P PC ++ L+ + AF RR Sbjct: 162 MAQYYCQVVPVLEVPPTSFTPAPKVDSAVIRLLPFEVKPWPCKNVDVLRHLVTTAFNMRR 221 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 KTLR +LK L + + I+ +LR E +S+ + + N+L D +D Sbjct: 222 KTLRNNLKTLLSDEDFAELQIDASLRPEQISVPQYVAMANMLCDKKD 268 >gi|210617032|ref|ZP_03291367.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787] gi|210149555|gb|EEA80564.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787] Length = 290 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 152/287 (52%), Gaps = 21/287 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ IL Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 5 TLGNPQNTIE-ILQKYDFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L AR+V+ +E D+ PIL+D + N + +I DD LKVD K +N + P Sbjct: 64 TQ-YLACAARQVVAVEIDKALIPILEDTLQAYDN-VTVINDDVLKVDIPKLAKEYNDNKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---IESITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI H P P +E+ K +I + +F +RRK Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRHKEP-PVQVENEKLMFQIIRASFNQRRK 237 Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274 TL L +L + G ++R E L++++F +++ Sbjct: 238 TLANGLNNSPEIHLPKEVITTAIESLGKGPSVRGEALTLQEFAVLSD 284 >gi|290581127|ref|YP_003485519.1| dimethyladenosine transferase [Streptococcus mutans NN2025] gi|254998026|dbj|BAH88627.1| dimethyladenosine transferase [Streptococcus mutans NN2025] Length = 291 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + IL D N ++++ +D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVSILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++ + AF RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFRVGKAAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L A I+ ++R E L+I DF R+ + L Sbjct: 245 FGKSKEVKVKLEQALEAADIKPSIRGEALTITDFARLADAL 285 >gi|227824447|ref|ZP_03989279.1| dimethyladenosine transferase [Acidaminococcus sp. D21] gi|226904946|gb|EEH90864.1| dimethyladenosine transferase [Acidaminococcus sp. D21] Length = 287 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 95/270 (35%), Positives = 145/270 (53%), Gaps = 12/270 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + + KK GQNFL++ ++++ IAE + G V+E+G G G LTQ L GA Sbjct: 19 RYILDTFGLHTKKRFGQNFLINESVVRGIAEKAKIGPGDLVLEVGPGIGTLTQALAETGA 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V +E D+ PIL+ + N +EII D LKVD K P + ANLPY I Sbjct: 79 -NVKSVEIDESLLPILRKTLEGYDN-VEIIHGDILKVDL-KDITGGKPFTVAANLPYYIT 135 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++F+ + A+ P + + ++ QKEV ER+ A+ + YG LS+ + ++ + + Sbjct: 136 TPIIFSLLEANL--PL-KRIVVMVQKEVAERMAARPGTKAYGPLSLALQYYSEPQLAIPV 192 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRL----- 244 H F P+PKV S V+ +PI SL K+ + AF +RRK LR LK + Sbjct: 193 PAHDFMPAPKVDSMVVVCEKRESPIVNVDASLYVKVVRAAFSQRRKMLRTCLKSMVRPGD 252 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITN 274 E + +AGIE R E+L+IE+F ++ Sbjct: 253 TAEAWMARAGIEPTRRGESLTIEEFGKLAE 282 >gi|89101161|ref|ZP_01173994.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911] gi|89084129|gb|EAR63297.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911] Length = 293 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 145/282 (51%), Gaps = 22/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL +I + + +G IEIG G G LT+ L + Sbjct: 12 RAILEKYGFSFKKSLGQNFLIDTNILNRIVDHAELREGSGAIEIGPGIGALTEQLAKR-S 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 KV+ E DQ+ PILK+ + +PN E+I D LK D E+ F + ++ANLP Sbjct: 71 EKVVAFEIDQRLLPILKETLAPYPN-AEVIHQDVLKADVKTTIEERFAPGQDLMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + QKEV +RI+A+ S YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-EKLP--IRGIVCMLQKEVADRISAKPGSKDYGSLSIAVQYYTEAET 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI P P ++ ++T+ +F +RRKT+ +L Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLTRREQP-PVLVKDEAFFFQVTKASFAQRRKTILNNLTS 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ L AGIE + R E LSI +F R+++ L Sbjct: 246 QLHEGKQKKEAILAALETAGIEPSRRGETLSIGEFGRLSDEL 287 >gi|295115506|emb|CBL36353.1| dimethyladenosine transferase [butyrate-producing bacterium SM4/1] Length = 310 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 151/280 (53%), Gaps = 20/280 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D+++L KI ++G V+EIG G G +TQ L A++ Sbjct: 37 IIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE-SAKQ 95 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 V+ +E D PIL + + + N + +I D LKVD +K +N PI+++ANLPY I Sbjct: 96 VVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPIKVVANLPYYI 154 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +++T++ QKEV +R+ S YG LS+ + + ++ + Sbjct: 155 TTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYAEPYIVAN 211 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243 + P+ F P P V S VI H P P +++ + K+ + +F +RRKTL L Sbjct: 212 VPPNCFIPRPNVGSAVIRLTRHKKP-PVEVKNRDLMFKLIRASFNQRRKTLLNGLNNSPE 270 Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 +G E + + Q G+ ++R E +++E F R++++L + Sbjct: 271 IPIGKEKIAAAIEQLGVPASVRGEAMTLEQFARLSDLLEE 310 >gi|313896764|ref|ZP_07830312.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974681|gb|EFR40148.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 291 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL+ + + K +GQNFL+D +++ I E++ TV+EIG G G LTQ L GAR Sbjct: 17 ILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGAR- 75 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIG 130 V+ +E D++ +L + + N + ++ D LK++ + + R ++ANLPY I Sbjct: 76 VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPYYIT 134 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + P E L + QKEV R+TAQ S YG LS+ + T M+ D+ Sbjct: 135 TPIIMTLLE-QRLP--IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMVMDV 191 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 P F P+P+VTS V+ I +P P + ++ + AFG+RRKTL +L G Sbjct: 192 PPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAGLTK 251 Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + L AGI + R E LS++DF RI++ + D Sbjct: 252 DAAQAALRAAGIAGSTRGEQLSLQDFARISDAVGD 286 >gi|29349451|ref|NP_812954.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron VPI-5482] gi|253570180|ref|ZP_04847589.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6] gi|298384949|ref|ZP_06994508.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14] gi|33516931|sp|Q8A0H8|RSMA_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29341360|gb|AAO79148.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron VPI-5482] gi|251840561|gb|EES68643.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6] gi|298262093|gb|EFI04958.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14] Length = 267 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 136/257 (52%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + V+E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPVLEVGPGMGVLTQFLVK-KDRLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 ENKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K++ + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNDTKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+E+F +TN Sbjct: 237 NKRPEQLSVEEFISLTN 253 >gi|238797489|ref|ZP_04640987.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969] gi|238718630|gb|EEQ10448.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969] Length = 232 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 133/235 (56%), Gaps = 18/235 (7%) Query: 51 VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDAL 105 ++EIG G G LT+ + AR ++ VIE D+ L + HP ++L I Q DA+ Sbjct: 1 MVEIGPGLGALTE---PVAARMDRMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAM 53 Query: 106 KVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 KV+F + ++ P+R+ NLPYNI T L+F+ S + + + QKEV R+ A Sbjct: 54 KVNFAELAELAGQPLRVFGNLPYNISTPLMFHLFS---YTNAIRDMHFMLQKEVVNRLVA 110 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESL 222 NS YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + L Sbjct: 111 GPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRML 170 Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +IT +AF +RRKT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 171 TRITTQAFNQRRKTVRNSLGDLFTAEQLIELGIDPILRAENISVAQYCKLANWLS 225 >gi|163802665|ref|ZP_02196556.1| dimethyladenosine transferase [Vibrio sp. AND4] gi|159173553|gb|EDP58373.1| dimethyladenosine transferase [Vibrio sp. AND4] Length = 270 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + L G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIHEGDAMRFDFSQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYFCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P L L+++ +E F +RRKT+R K L +L + G+ Sbjct: 184 PKVDSAVVRLMPYDVLPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 ++R ENL+++ F + N L DN Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266 >gi|311087037|gb|ADP67117.1| dimethyladenosine transferase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 308 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 143/282 (50%), Gaps = 26/282 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H P K GQNFL++ + +K I + T++EIG G Sbjct: 36 MTKNFKKH-----------FPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 85 LTKPMCEL-LEELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141 Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 RI NLPYNI T L LF I + + + QKEV ER+ + + YGRLS+ Sbjct: 142 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 195 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234 ++ + ++ ++SP F P PKV S I+ PH N + L IT++AF RR Sbjct: 196 ISQYYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 255 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K LR SLK L E L + I +NLRAEN+S+ +C++ N L Sbjct: 256 KILRHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYL 297 >gi|46200223|ref|YP_005890.1| dimethyladenosine transferase [Thermus thermophilus HB27] gi|62900548|sp|Q72GC7|RSMA_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|46197851|gb|AAS82263.1| dimethyladenosine transferase [Thermus thermophilus HB27] Length = 271 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 19/281 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ S++ +L + + K GQNFL+ L++I E++ G V E+G G G Sbjct: 1 MSKLASPQSVRALLERHGLFADKRFGQNFLVSEVHLRRIVEAARPFTG-PVFEVGPGLGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V IEKD + P+L++ S P RL + DAL +E+ S Sbjct: 60 LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLPVRL--VFQDALLYPWEEVPQGSL--- 113 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T L+ + + L L QKEV ER+TA+ +P YG L++ Sbjct: 114 LVANLPYHIATPLVTRLLKTGRF----ARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 A +FD+ P FFP PKV S+++ P P L ++ + AFGKRRKTL + Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGAPDDP---GLFRLVEAAFGKRRKTLLNA 226 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G E L G+ +RAE L +E F R+ L Sbjct: 227 LAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267 >gi|238755736|ref|ZP_04617069.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473] gi|238706028|gb|EEP98412.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473] Length = 236 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 130/237 (54%), Gaps = 12/237 (5%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 + G V+EIG G G LT+ + AR + VIE D+ L Q ++L I Q D Sbjct: 1 MPGEAVVEIGPGLGALTE---PVAARMDHMTVIELDRDLAARLA-CHPQLKDKLTIHQQD 56 Query: 104 ALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 A+KV+F + S P+R+ NLPYNI T L+F+ S + + + QKEV R+ Sbjct: 57 AMKVNFAELAEQSGKPLRVFGNLPYNISTPLMFHLFS---YTQAILDMHFMLQKEVVNRL 113 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LE 220 A NS YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + Sbjct: 114 VAGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHINMPNPVGDVR 173 Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L +IT +AF +RRKT+R SL L L + G+ LRAEN+S+ +C++ N L+ Sbjct: 174 MLSRITTQAFNQRRKTVRNSLGDLFTPEQLTELGVNPTLRAENISVAQYCKLANWLS 230 >gi|153815218|ref|ZP_01967886.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756] gi|317502323|ref|ZP_07960492.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089927|ref|ZP_08338819.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 3_1_46FAA] gi|145847477|gb|EDK24395.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756] gi|316896279|gb|EFV18381.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403159|gb|EGG82720.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 292 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 21/291 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y I +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTI-AVLQKYNFIFQKKFGQNFLIDTHVLDKIIRAAEIGKDDLVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L+ A KVI +E D+ PIL+D + N + +I +D LKVD K N P Sbjct: 64 TQ-YLSCAAGKVIAVEIDRALIPILEDTLDGYDN-VRVINEDVLKVDIRKLVEEENEGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + P +S+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLF--ENHVPI-KSITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + K ++ ++ P+ F P PKV S VI H +P P + K ++ + +F +RRK Sbjct: 179 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERHEHP-PVEVRDEKLMFRVIRASFNQRRK 237 Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL LK + E + + G ++R E L++ +F ++ N D Sbjct: 238 TLANGLKNSPEIDFSKEEIEGAIEKLGKGASVRGEALTLAEFAQLANYFCD 288 >gi|313680695|ref|YP_004058434.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977] gi|313153410|gb|ADR37261.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977] Length = 273 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 18/281 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K +++ +L Y + + +GQNFL+D +L I ++ G V E+G G G Sbjct: 1 MPSLTKPSTVRALLERYGLAADRRLGQNFLVDAGLLDVIVRTADVRPGQEVWEVGPGLGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L GAR V IEKD + P+L++ + P +E+ DAL D+ + S Sbjct: 61 LTRALALAGAR-VHAIEKDTRLEPVLRETLAGLP--VELSFADALDCDWSEVPPGSL--- 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++NLPYN+ T LL + + L +L Q+EV ER+ A +P YG LS+ Sbjct: 115 FVSNLPYNVATPLLSELLRQGRF----GRLVVLLQREVAERLAAAPGTPAYGLLSLRAAH 170 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + + D P F+P PKVTST++ + H P E L ++ + AF RRKTLR++ Sbjct: 171 HARVRKVRDFPPEAFYPRPKVTSTLVE-LEHTG-APDDPE-LFRLIEAAFAARRKTLRKN 227 Query: 241 LKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276 L++ G L +AG+E +RAE L IEDF ++ L Sbjct: 228 LEQAGWPRDRVLAALAEAGLEPMVRAERLGIEDFRKLHAAL 268 >gi|227891849|ref|ZP_04009654.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741] gi|227866312|gb|EEJ73733.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741] Length = 296 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 148/281 (52%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y + KK +GQNFL D+NILK I ++ + VIEIG G G LT+ L A Sbjct: 15 RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAK-RA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 KV+ +E D + P+L D S + N +E+I D LK D E F ++++ANLP Sbjct: 74 NKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHKLKLVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + + + +E++ ++ QKEV ER+ A + YG LSV + + + Sbjct: 133 YYITTPILMHLLDSGIE---FETIVVMMQKEVAERLAANPGTKAYGSLSVAVQYEMDSEI 189 Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S +I + P P + KK+ + +F RRK+L +L+ L Sbjct: 190 AFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKSLWNNLQSL 249 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G++ L A I+ ++RAE L++ DF +++ L Sbjct: 250 YGKDSETKEKMLQALEVADIKQSIRAEKLTVADFINLSDAL 290 >gi|304410422|ref|ZP_07392040.1| dimethyladenosine transferase [Shewanella baltica OS183] gi|307304514|ref|ZP_07584264.1| dimethyladenosine transferase [Shewanella baltica BA175] gi|304350906|gb|EFM15306.1| dimethyladenosine transferase [Shewanella baltica OS183] gi|306911916|gb|EFN42340.1| dimethyladenosine transferase [Shewanella baltica BA175] Length = 268 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 148/286 (51%), Gaps = 27/286 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H L H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH-----LGH---TARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 + + + V+E D+ P+LKD +L I Q DAL+ DF + Sbjct: 53 EPVAE-AVDNLTVVELDRDLVERLHHHPVLKD-------KLTIHQGDALQFDFGQLSVPG 104 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234 + + + + ++ PH F P+PKV S V+ +P+ + P C + L+ + AF RR Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFSCKDVTVLRHLCTTAFNMRR 221 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTLR +LK + ++ Q GI+++ R E +S++ + + N++ D + Sbjct: 222 KTLRNNLKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267 >gi|270294487|ref|ZP_06200689.1| dimethyladenosine transferase [Bacteroides sp. D20] gi|270275954|gb|EFA21814.1| dimethyladenosine transferase [Bacteroides sp. D20] Length = 264 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 138/255 (54%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ I ++E+G G G LTQ LL R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVELDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ Q + II+DD LK++ ++ F + + + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFGGQAFV-LTGNYPYNISSQIFFKMLEY 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F + HVF P PK Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + C E L K++ + F +RRKTLR S+K + G++ + N Sbjct: 179 VKSAVIRMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+++F ++TN Sbjct: 239 RPEQLSVKEFIQLTN 253 >gi|312623284|ref|YP_004024897.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis 2002] gi|312203751|gb|ADQ47078.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis 2002] Length = 282 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 147/270 (54%), Gaps = 13/270 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L +L Y + P K +GQNFL+D N+++KI S + +G VIEIGAGPG LT + L Sbjct: 9 DLLNLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQA-EGKEVIEIGAGPGTLT-VYLAK 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV +E D++ +LKD+ N ++I+ D L+++ + N + + +I NLPY Sbjct: 67 TAQKVFAVEIDKKILNVLKDVCQSLSN-VQIVNSDFLELNVKNLTN-GNKVYVIGNLPYY 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + +++LF E T++ QKEV +R+ A+ + YG L+V + + F Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245 +S +VF+P P+V S V+ + + KI F RRKT+ +L + Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNALSNQLDIA 241 Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272 + L + AG++ NLRAE+LS++D+ R+ Sbjct: 242 KDELKKIILMAGLDENLRAEDLSLDDYIRL 271 >gi|313200361|ref|YP_004039019.1| dimethyladenosine transferase [Methylovorus sp. MP688] gi|312439677|gb|ADQ83783.1| dimethyladenosine transferase [Methylovorus sp. MP688] Length = 254 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/264 (35%), Positives = 137/264 (51%), Gaps = 15/264 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K + KK GQNFL D I+ + + ++EIG G G LTQ LL L V+ I Sbjct: 2 KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLENLHVVEI 61 Query: 77 EKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 ++D I+ + + P ++ I DALK DF +I+ +R++ NLPYNI T +LF Sbjct: 62 DRD-----IIAWMEKHYAPGKVTIHNIDALKFDFA---SIAPRLRVVGNLPYNISTPILF 113 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV ER+ A+ +S YGRLSV+ + +F + P F Sbjct: 114 HLLDNVA---HIIDMHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAF 170 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S + +PH P P +L ++ AFG+RRKTLR +LK L + Sbjct: 171 DPAPKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEAL 230 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI++ RAENL + F I N L Sbjct: 231 GIDSQWRAENLPLSSFVSIANYLV 254 >gi|295698578|ref|YP_003603233.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA] gi|291157440|gb|ADD79885.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA] Length = 263 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 11/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D + +I ++IEIG G GNLT + + + I IE D Sbjct: 4 KKRFGQNFLSDSIVQDRIVTYFAPKSDQSIIEIGTGLGNLTIPIYHVIKKSFITIEIDAD 63 Query: 82 FFPILKDISSQHPNRLEIIQ---DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 ++K + S +P+ ++++ D +K+DF+ S RII +LPYNI ++ + Sbjct: 64 ---LIKHLLSFYPDIFQVVKILNSDIMKLDFDLIMKKSLKYRIIGSLPYNIAIPIMVRFF 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + + QKE+ +R+ A N YGR SVL + +F ISP+ F P Sbjct: 121 SYHKQ---LIDMHFVLQKEIVDRLIASPNIKLYGRTSVLFQYHFSINPIFHISPYSFRPI 177 Query: 199 PKVTSTVIHFIPHLNPI-PCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV ST + F P+ N I P C + LK IT+ AF +RRK + SLK Q I+ Sbjct: 178 PKVNSTFVRFKPYKNRIYPICEVNLLKLITRVAFHQRRKKILNSLKEFFNIEDYSQLCID 237 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 N+RAENL+I ++C++TN L+ + Sbjct: 238 YNMRAENLTILEYCKLTNWLSKKE 261 >gi|24378846|ref|NP_720801.1| dimethyladenosine transferase [Streptococcus mutans UA159] gi|27151562|sp|P59156|RSMA_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24376723|gb|AAN58107.1|AE014882_10 dimethyladenosine transferase [Streptococcus mutans UA159] Length = 291 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKLFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ +D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+AQ ++ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAQPSTKAYGSLSIAVQYYMTAKI 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + + + AF RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFCVGKAAFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L A I+ ++R E L+I DF R+ + L Sbjct: 245 FGKSEEVKVKLEQALEAADIKPSIRGEELTITDFARLADAL 285 >gi|315222376|ref|ZP_07864281.1| dimethyladenosine transferase [Streptococcus anginosus F0211] gi|315188537|gb|EFU22247.1| dimethyladenosine transferase [Streptococcus anginosus F0211] Length = 291 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFLAENTA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LK D + +F N + PI+++ANLP Sbjct: 70 -EVMAFEIDDRLVPILADTLRDFDN-VRVVNEDILKSDLQARIKEFANPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ Q+EV +RI+AQ NS YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNSKSYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRRKTLWNNLTSY 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E+ L A + ++R E L +++F + + L D Sbjct: 245 FGKSNEVKTKLESALDNAELSPSVRGEALDLQEFAHLADSLYD 287 >gi|254372526|ref|ZP_04988015.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570253|gb|EDN35907.1| dimethyladenosine transferase [Francisella novicida GA99-3549] Length = 262 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL+ + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|71065521|ref|YP_264248.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4] gi|119365049|sp|Q4FT44|RSMA_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71038506|gb|AAZ18814.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4] Length = 287 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 13/277 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + S+ L K P+K GQNFL D +++++I ES +IEIG G G LT+ LL Sbjct: 8 AQSISNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLL 67 Query: 67 T-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIAN 124 + A V+ +++D ++ ++ HPN II+D+A+ VD+ + ++ +R++ N Sbjct: 68 AEVDAMTVVELDRDLADSLRIRIGANSHPN-FTIIKDNAMHVDYRELYSEERGKLRVVGN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI T +LF+ +S + E + + QKEV ERITA S YGRLSV+ + Sbjct: 127 LPYNISTPILFHLLS---YADVIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHT 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242 + + F P PKVTS V PH + P+ E + +E F RRKTLR K Sbjct: 184 DYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRKTLRAIFK 243 Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274 + E+ I+ R E L+++DF ++N Sbjct: 244 KSTLLPTLSEDDFAACAIDPQARPETLNVKDFVNLSN 280 >gi|88859121|ref|ZP_01133762.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2] gi|88819347|gb|EAR29161.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2] Length = 268 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 15/265 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D I+ KI + ++EIG G G +T+ + + + V+E D+ Sbjct: 12 KKRFGQNFLNDAMIIDKIVTAIDPKPEDCLVEIGPGLGAITEPVTDIAGH-LTVVELDKD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L HP +L + Q DA++ DF + +++ NLPYNI T LLF+ Sbjct: 71 LVERL----IHHPFLGPKLTVHQGDAMRFDFSTLVEENKKLKVFGNLPYNISTPLLFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + E + + QKEV +R+ A + YGRLSV+T + A + ++ P F P+ Sbjct: 127 D---YAEHIEHMHFMLQKEVVKRMVASPDCKAYGRLSVMTQYYCHAIPVIEVPPECFKPA 183 Query: 199 PKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ IP P C + L + EAF +RRKT+R SL L + + + G+ Sbjct: 184 PKVDSAVVRLIPK-KPEQLRAKCTKILNTVCLEAFNQRRKTIRNSLSNLLTTDDMIELGL 242 Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280 ++ RAENLS++ + I N L DN+ Sbjct: 243 DSKARAENLSLDQYIDIANWLYDNK 267 >gi|150014951|ref|YP_001307205.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052] gi|149901416|gb|ABR32249.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052] Length = 281 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 12/283 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ K + ++ Y K +GQNFL+D ++L I + + +IEIG G G LT Sbjct: 1 MDLKDIKTQELVKKYNFKFSKSLGQNFLVDDSVLDDIVNGAEVNNEDFIIEIGPGVGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + A+KV IE D PIL+ +H N +I DALKVDF + ++++ Sbjct: 61 AQLL-MKAKKVTSIELDNDLIPILEQELGEHKN-FSLIHKDALKVDFNELIGDEKSVKLV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + ++SLT++ QKEV ERI A+ N YG LSVL + Sbjct: 119 ANLPYYVTTPIIVKLLKGGYN---FKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQS 240 ++ + P F P PKV S VI P + + +I + F RRKTL + Sbjct: 176 NTDIIRKVPPTCFIPRPKVESIVIRLDRLDEPRVKTKDINIMFEIVRAGFNMRRKTLWNA 235 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K L E ++GI+ RAE L++E+F +++ + D Sbjct: 236 AKTLKVDKEKLEEAFKKSGIDPKRRAETLTLEEFAALSDCIYD 278 >gi|257471197|ref|ZP_05635196.1| dimethyladenosine transferase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 308 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 36 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 85 LTKPMCEL-LEELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141 Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 RI NLPYNI T L LF I + + + QKEV ER+ + + YGRLS+ Sbjct: 142 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 195 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234 ++ + ++ ++SP F P PKV S I+ PH N + L IT++AF RR Sbjct: 196 ISQYYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 255 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K LR SLK L E L + I +NLRAEN+S+ +C++ N L Sbjct: 256 KILRHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYL 297 >gi|332994415|gb|AEF04470.1| dimethyladenosine transferase [Alteromonas sp. SN2] Length = 275 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 141/277 (50%), Gaps = 22/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT L H +K GQNFL D ++ +I + ++EIG G G LT + Sbjct: 3 KTHLGHTA---RKRFGQNFLHDDYVIGQIVSAINPQHEQNLVEIGPGLGALTDPVCD-EV 58 Query: 71 RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI----SSPIRIIA 123 + VIE D+ L+ +HP ++L +I+ DA+ +DF + +R+ Sbjct: 59 EALTVIELDRDLAKRLR----EHPFNGDKLTVIEQDAMTMDFTELAKTMPVKDKGLRVFG 114 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYNI T L+F+ S + + + QKEV R+ A S YGRLSV+ + K Sbjct: 115 NLPYNISTPLMFHLFSHAAC---VDDMHFMLQKEVVNRLAAGHGSKSYGRLSVMAQYYCK 171 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQS 240 + ++ P F P PKV S V+ IPH P P + +L+++ +AF +RRKT+R S Sbjct: 172 VMPVLNVPPGAFKPPPKVDSAVVRLIPHKTP-PVDVVSVATLERVCAQAFNQRRKTIRNS 230 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK E + + GI +RAE LS++DF I N ++ Sbjct: 231 LKESLTETQISELGINPTVRAEVLSLQDFATIANAVS 267 >gi|293381472|ref|ZP_06627467.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1] gi|290921942|gb|EFD98949.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1] Length = 294 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 24/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D + I E++ VIEIG G G+LT+ LL GA Sbjct: 14 QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAARIKKDDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFE----KFFNISSPIR 120 KV E D IL K I Q +R ++I D LK DF+ FF+ + PI+ Sbjct: 74 -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKVDISDFFDFTKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ S YG L++ Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + +S + F P PKV S+V+ P L P +E+ K + + F +RRKTL Sbjct: 190 EMNVKLALQVSHNSFMPRPKVDSSVVVLTP-LKEKP-AIENRKHFIWVVKMCFSQRRKTL 247 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L + L + G+ +R E L+I+ F +I + + Sbjct: 248 NNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291 >gi|160886818|ref|ZP_02067821.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483] gi|156107229|gb|EDO08974.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483] Length = 266 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 136/255 (53%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R + V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ + F+ +P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GTPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F +S HVF P PK Sbjct: 122 KDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K++ + F +RRKTLR S+K + G++ I N Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+ +F +TN Sbjct: 239 RPEQLSVAEFIDLTN 253 >gi|331701953|ref|YP_004398912.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus buchneri NRRL B-30929] gi|329129296|gb|AEB73849.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus buchneri NRRL B-30929] Length = 296 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + KK +GQNFL+DL +L I ++ VIEIG G G LT+ L A Sbjct: 14 QAILNRYHLSAKKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQLAK-AA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 KV+ E D P+L + + + N +EII D LK + K F+ P++++ANLP Sbjct: 73 NKVVAFEIDANLLPVLDETLAPYDN-IEIINQDILKANLPKIIDDVFDTEKPLKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ + I+ +T ++++ ++ QKEV ER+ A+ ++ YG LSV+ + + Sbjct: 132 YYITTPIVMDLITGETQ---FDAIVVMMQKEVAERLNAEPSTKPYGSLSVIVQELNQVEI 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + F P PKV S ++ P + P ++ + F +RKTL +L+ + Sbjct: 189 SFVVPKTAFIPQPKVDSAIVKLTPRVKRAVEPFDQKAFISFVRGCFMHQRKTLWNNLQGI 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274 G+ +L I+ +R ENL+++ F + N Sbjct: 249 FGKTPEVKGNIKEVLASVNIDAGVRPENLTVDQFVTLAN 287 >gi|326915765|ref|XP_003204183.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Meleagris gallopavo] Length = 350 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 27/291 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ + + +K + QNFLLDL + KI +G L V E+G GPG +T+ +L Sbjct: 17 TVGEIIKLFSLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 G ++++++EKD +F P L+ +S P ++ I+ D L E+ F + I Sbjct: 77 GVQQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMERAFPNHLKKNWEDEPPNI 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+N+ T L+ W +S P + +TL FQKEV ER+TA RL Sbjct: 137 HIIGNLPFNVSTPLIIKWLENVSKRDGPFVYGRTQMTLTFQKEVAERLTANTGGKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S+++ F I F P P V V+HF P + P I E ++K+ Q F R Sbjct: 197 SIMSQHLCTVENCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVFQFR 256 Query: 234 RKTL----------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 RK R+ LK+ E L+ A ++ LR L++ F + N Sbjct: 257 RKYCCRGVEILFPERERLKK--TEQLMMAADVDPTLRPVQLTMSHFRNLCN 305 >gi|219681516|ref|YP_002467901.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624359|gb|ACL30514.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 273 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 1 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 50 LTKPMCEL-LEELIVIEIDQDLLFLLKKRSFY--SKLIVFYQNALSFNFLNLFHKKKQLI 106 Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 RI NLPYNI T L LF I + + + QKEV ER+ + + YGRLS+ Sbjct: 107 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 160 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234 ++ + ++ ++SP F P PKV S I+ PH N + L IT++AF RR Sbjct: 161 ISQYYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 220 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K LR SLK L E L + I +NLRAEN+S+ +C++ N L Sbjct: 221 KILRHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYL 262 >gi|254373987|ref|ZP_04989469.1| dimethyladenosine transferase [Francisella novicida GA99-3548] gi|151571707|gb|EDN37361.1| dimethyladenosine transferase [Francisella novicida GA99-3548] Length = 262 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL+ + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHNIVVEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|302024552|ref|ZP_07249763.1| dimethyladenosine transferase [Streptococcus suis 05HAS68] gi|330833629|ref|YP_004402454.1| dimethyladenosine transferase [Streptococcus suis ST3] gi|329307852|gb|AEB82268.1| dimethyladenosine transferase [Streptococcus suis ST3] Length = 290 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI ++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D + N + ++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ L A +E ++R E LS+ DF R+++ L + Sbjct: 245 FGKSDEVKDKLTRALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|237714484|ref|ZP_04544965.1| dimethyladenosine transferase [Bacteroides sp. D1] gi|262408316|ref|ZP_06084863.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] gi|293373592|ref|ZP_06619940.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f] gi|294646638|ref|ZP_06724267.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a] gi|294805896|ref|ZP_06764766.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b] gi|299148382|ref|ZP_07041444.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23] gi|229445648|gb|EEO51439.1| dimethyladenosine transferase [Bacteroides sp. D1] gi|262353868|gb|EEZ02961.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] gi|292631417|gb|EFF50047.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f] gi|292638021|gb|EFF56410.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a] gi|294446925|gb|EFG15522.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b] gi|295086621|emb|CBK68144.1| dimethyladenosine transferase [Bacteroides xylanisolvens XB1A] gi|298513143|gb|EFI37030.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23] Length = 266 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K++ + F +RRKTLR S+K + G++ I Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+ +F +TN Sbjct: 237 NKRPEQLSVAEFIDLTN 253 >gi|83588925|ref|YP_428934.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073] gi|119365033|sp|Q2RME8|RSMA_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83571839|gb|ABC18391.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073] Length = 288 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 144/275 (52%), Gaps = 24/275 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVI 76 ++P+K GQNFL+D NI++KIA ++ G TV+EIG G G LTQ L AR VI I Sbjct: 19 LVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQ---ELAARAGLVIAI 75 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIRIIANLPYN 128 E D++ F L++ + N + ++ DALKVDF++ +++ANLPY Sbjct: 76 EIDRELFAALEETLAGRDN-VRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVANLPYY 134 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + +++ L L+ Q EVG R+ A+ YG LSV+ + T+ ++ Sbjct: 135 ITTPILMHLLTSRFR---IAELVLMVQAEVGYRMLARPGGKDYGALSVVVQYYTEPAVVL 191 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246 + VF+P P+V S V+ P+ + ++ + AF +RRKT+ +L LG Sbjct: 192 KVPRTVFYPRPEVDSLVLKLTCRTRPVVQVEDEDFFFRVVRAAFNQRRKTILNALGSLGF 251 Query: 247 E-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L AGI+ R E L +E+F I+ L Sbjct: 252 EKSKIMEALAGAGIDPRRRGETLGMEEFASISRTL 286 >gi|315127732|ref|YP_004069735.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913] gi|315016246|gb|ADT69584.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913] Length = 268 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 138/267 (51%), Gaps = 19/267 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +I+ KI + ++EIG G G +T+ + L + V+E D Sbjct: 12 RKRFGQNFLFDESIIDKIVTAIDPKPQDNLVEIGPGLGAITEPVADLSGH-LTVVELD-- 68 Query: 82 FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 KD++ +HP +L + Q DA+K DF +++ NLPYNI T LLF Sbjct: 69 -----KDLAQRLIEHPFLGPKLTVNQGDAMKFDFASLVKDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV +R+ A S +GRLSV+T + A + ++ P F Sbjct: 124 HLFE---FADHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCHAMPVVEVPPECF 180 Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S VI IP ++ L + EAF +RRKTLR SL L + L Sbjct: 181 KPAPKVDSAVIRLIPKKAQQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTADELTSI 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ LRAE+LS++ F I N + DN+ Sbjct: 241 GIDITLRAESLSLQQFIDIANWIYDNK 267 >gi|148264355|ref|YP_001231061.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4] gi|146397855|gb|ABQ26488.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4] Length = 275 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 144/267 (53%), Gaps = 16/267 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK MGQNFL+D N+L +I ++ ++E+G G G LT +L+ A +V+ +E Sbjct: 3 KIRAKKSMGQNFLVDRNVLTRIVDAVNISAEDRILEVGPGKGALTALLVERAA-QVLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLF 135 D+Q P L + N +E +Q D LKV+ + S ++ ANLPYNI +++LF Sbjct: 62 LDRQLVPFLAREFAPQKN-VEFVQGDILKVNLSELLMDRWSGAWKVAANLPYNISSQVLF 120 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ P + L L+ QKEVG+R+ A YG LSV + + + P F Sbjct: 121 KFLDN---PKLFSLLILMLQKEVGDRLIAAPGCKDYGILSVFCRLHFDISRVLIVKPGSF 177 Query: 196 FPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLK--RLGGE---- 247 P PKV S V+ F+P P + ES +K+ + AF +RRKTL LK LG + Sbjct: 178 TPVPKVDSVVLKFVPLPAPRVDVEDESFFRKVVKAAFSQRRKTLWNCLKSSELGVDGDVL 237 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRIT 273 +LL + GI+ + R E LS+++F +T Sbjct: 238 LSLLTKCGIDGSRRGETLSLDEFAVLT 264 >gi|170575593|ref|XP_001893303.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi] gi|158600773|gb|EDP37864.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi] Length = 364 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 26/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SLK+ L Y++ KK + QN+L+D+N+ +KI + G V+EIG GPG++T+ +L + Sbjct: 13 SLKSFLYAYQLQAKKILSQNYLMDMNLTRKIVRQAEMKKGDYVVEIGPGPGSITRAILEM 72 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-------- 120 R++ VIE D +F P L+ + R+ I + D LK + E+ ++ + R Sbjct: 73 DCRRLDVIEIDHRFVPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEEDRL 132 Query: 121 ----IIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 II NLP+NI + L+ ++ W L L FQ EV ER+ + +SP Sbjct: 133 PTAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRVPLLLTFQMEVAERLCSPIDSPFR 192 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 R+S+++ + T+ ++F I F PSPKV V+ F+P +P I E ++K+ + F Sbjct: 193 ARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFVPRQDPLIKTSFEVVEKVCRRIF 252 Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+K + + ++ L ++LL + I+ A L +E F I + ++ Sbjct: 253 NYRQKYVIKGVRTLYPKELAKHLADDLLKRCRIDPTTTAICLGVEQFADICYVYEEH 309 >gi|21909726|ref|NP_663994.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS315] gi|28895107|ref|NP_801457.1| dimethyladenosine transferase [Streptococcus pyogenes SSI-1] gi|27151566|sp|Q8K8N6|RSMA_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21903910|gb|AAM78797.1| putative dimethyladenosine transferase [Streptococcus pyogenes MGAS315] gi|28810352|dbj|BAC63290.1| putative dimethyladenosine transferase [Streptococcus pyogenes SSI-1] Length = 290 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 149/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMMRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I++++R E LSI+DF ++ + L + Sbjct: 245 FGKSEDIKAKLEKGLALADIKSSIRGEALSIQDFGKLADALKE 287 >gi|317499422|ref|ZP_07957689.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893294|gb|EFV15509.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 285 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 154/289 (53%), Gaps = 19/289 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N ++++ ++ Y +K GQNFL+D +L+KI ++ V+EIG G G Sbjct: 1 MKLGNPKNTIE-VIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+V+ +E D+ PIL D S + N + I+ D LKVD K N Sbjct: 60 MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ + +S+T++ QKEV +R+ + + YG LS+ Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI + + I E L ++ + +F +RRK Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDALIKVTNEKLLFQLIRASFNQRRK 234 Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 TL+ +K GG N L + + ++R E L++E F +++NIL Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283 >gi|238917939|ref|YP_002931456.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750] gi|238873299|gb|ACR73009.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750] Length = 293 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 154/289 (53%), Gaps = 19/289 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N ++++ +L+ Y KK GQNFL+D N+++KI +G V+E+G G G Sbjct: 10 MHLGNPTNTI-AVLNRYGFDFKKKFGQNFLIDENVVEKIVREAGVTKDDFVVEVGPGIGT 68 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ+L AR+V+ +E D++ PIL + + + + + +I +D LK+D +K N Sbjct: 69 MTQILCE-NAREVVAVEIDKKLIPILTEDTLSYYDNVTVINEDILKLDIKKLADEKNEGR 127 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 128 PIKVVANLPYYITTPIIMGLFESHVP---LDSITIMVQKEVADRMQCGPGTKDYGALSLA 184 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRR 234 + K ++ ++ F P P V S VI P P +++ + KI + +F +RR Sbjct: 185 VQFYAKPKVVLNVPASCFMPRPNVDSAVIRLERFKTP-PVDVKNEHLMFKIIRASFNQRR 243 Query: 235 KTLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 KT+ S+ G N L G+ +R E L++E F +++N+L Sbjct: 244 KTMLNSVGNSGIGITKEALTNALETMGLPLTIRGEALTLEQFAQLSNLL 292 >gi|325569335|ref|ZP_08145491.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC 12755] gi|325157335|gb|EGC69496.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC 12755] Length = 295 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 150/280 (53%), Gaps = 21/280 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ + KK +GQNFL + NIL+KI E++G + VIE+G G G LT+ L A Sbjct: 14 KEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLAK-QA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 ++V+ E D + P+L D + N ++II D L+ D +F + ++ ++++ANL Sbjct: 73 KQVLAFEIDDRLIPVLADTMQPYAN-VKIIHQDVLQADLSTTIRSEFSDTAASLKVVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T ++ +++ + P E + ++ QKEV +RI+A + YG LS+ + +A Sbjct: 132 PYYITTPIMMHFLESQV--PVDE-MVVMMQKEVADRISAVPGTKAYGSLSIAVQYYMEAK 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243 + F + VF P P V S ++ P + + K+T+ AF RRKTL +L+ Sbjct: 189 LAFIVPKTVFVPQPNVDSAILKLTRRPQPAVAVTDEKEFFKLTKAAFQLRRKTLWNNLQN 248 Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 G+ + L +GI+ R E LS+ +F +++N Sbjct: 249 SYGKDEETKQWLADSLEASGIDPKRRGETLSLAEFAKLSN 288 >gi|222056012|ref|YP_002538374.1| dimethyladenosine transferase [Geobacter sp. FRC-32] gi|221565301|gb|ACM21273.1| dimethyladenosine transferase [Geobacter sp. FRC-32] Length = 275 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 146/266 (54%), Gaps = 15/266 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK MGQNFL+D N+L +I E+ V+EIG G G LT +L+ A +V+ +E Sbjct: 3 KIRAKKSMGQNFLVDGNVLSRIVEAVVLEPSDRVLEIGPGRGALTSLLVK-RAEQVLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135 D+Q P+L+ S N +E IQ D LK++ + + ++ ANLPYNI ++++F Sbjct: 62 LDRQLVPLLEKEFSGADN-VEFIQGDILKIELPEVLGSRWNGRWKVAANLPYNISSQVIF 120 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ + + SL L+ QKEVG+R+ A + YG LSV + + + P F Sbjct: 121 KFLDNVS---LFSSLILMLQKEVGDRLIASPGTKEYGILSVFCNLHFNISRVLIVKPGSF 177 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR-LGGEN---- 248 P PKV S V+ F+P P + +++ + +F +RRKTL L+ L +N Sbjct: 178 RPIPKVDSVVLKFVPLAAPRQDVGDETLFRQVVKASFSQRRKTLANCLRSALIADNDDLN 237 Query: 249 -LLHQAGIETNLRAENLSIEDFCRIT 273 +L QAGI+ R E L++E++ ++T Sbjct: 238 LILSQAGIDGGRRGETLTLEEYAQLT 263 >gi|332828677|gb|EGK01369.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas gadei ATCC BAA-286] Length = 266 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 140/259 (54%), Gaps = 13/259 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL DL+I ++IA++ + VIE+G G G LTQ L+ R++ V+E D+ Sbjct: 7 KKFLGQHFLKDLDIARRIADTLDDFPDVPVIEVGPGMGVLTQFLIE-KKRELTVVELDRD 65 Query: 82 FFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 P L ++H L+ II+DD LK+D K ++ + +I N PYNI +++ F + Sbjct: 66 SVPYL----NEHYPALQGHIIEDDFLKLDLLKIYD--NQFCVIGNYPYNISSQIFFKVLD 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + QKEV ERI A+ YG LSVL +F +S VF P P Sbjct: 120 YKNHIP---CCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPPP 176 Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S V+ + + C E L K + + F +RRKTLR S+K L G++ N Sbjct: 177 KVKSAVVKLVRNKRQSLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCDAYTDPIFN 236 Query: 259 LRAENLSIEDFCRITNILT 277 R E LS+ DF ++TNI+ Sbjct: 237 ERPERLSVADFEKLTNIVA 255 >gi|126701147|ref|YP_001090044.1| dimethyladenosine transferase [Clostridium difficile 630] gi|254977148|ref|ZP_05273620.1| dimethyladenosine transferase [Clostridium difficile QCD-66c26] gi|255094477|ref|ZP_05323955.1| dimethyladenosine transferase [Clostridium difficile CIP 107932] gi|255316228|ref|ZP_05357811.1| dimethyladenosine transferase [Clostridium difficile QCD-76w55] gi|255518890|ref|ZP_05386566.1| dimethyladenosine transferase [Clostridium difficile QCD-97b34] gi|255652069|ref|ZP_05398971.1| dimethyladenosine transferase [Clostridium difficile QCD-37x79] gi|260685043|ref|YP_003216328.1| dimethyladenosine transferase [Clostridium difficile CD196] gi|260688701|ref|YP_003219835.1| dimethyladenosine transferase [Clostridium difficile R20291] gi|306521805|ref|ZP_07408152.1| dimethyladenosine transferase [Clostridium difficile QCD-32g58] gi|118600854|sp|Q181C1|RSMA_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115252584|emb|CAJ70427.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) [Clostridium difficile] gi|260211206|emb|CBA66699.1| dimethyladenosine transferase [Clostridium difficile CD196] gi|260214718|emb|CBE07385.1| dimethyladenosine transferase [Clostridium difficile R20291] Length = 289 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ K ++ Y K +GQNFL+D NI+ KI + G +IE+G G G LT+ + Sbjct: 8 NATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMGK 67 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIAN 124 + A KV+ IE D+ PILKD S N E++ D LKVD ++ P++++AN Sbjct: 68 I-AEKVVAIEIDRNLIPILKDTLSDLDN-TEVVNQDILKVDIQELVKDKLNGGPVKLVAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T ++ ++ D P + + ++ QKEV +R+ A + YG LS+ + Sbjct: 126 LPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAIPGTKDYGALSIAVQYYCDT 182 Query: 185 TMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ H+F P P V STVI H + K + +FG+RRKTL SL Sbjct: 183 EIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRKTLLNSLG 242 Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 LG N +L +A I+ R E LSIE+F ++NI+ Sbjct: 243 GLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282 >gi|257868862|ref|ZP_05648515.1| dimethyladenosine transferase [Enterococcus gallinarum EG2] gi|257803026|gb|EEV31848.1| dimethyladenosine transferase [Enterococcus gallinarum EG2] Length = 300 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ + KK +GQNFL + NIL+KI ++ D VIE+G G G LT+ L A Sbjct: 14 KEILAKHGFTFKKSLGQNFLTEPNILRKIVATAAIDDQTNVIEVGPGIGALTEQLAK-HA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 R+V+ E D + P+L+D + + N +++I D L+ D + F PI+++ANLP Sbjct: 73 RQVLAFEIDDRLIPVLQDTLAPYSN-IQVIHQDVLQADLSTMIREAFTDERPIKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ ++ P E + ++ QKEV +RI+A + YG LS+ + +A + Sbjct: 132 YYITTPIMMHFL--ESQAPIQE-MVVMMQKEVADRISAVPGTKAYGSLSIAVQYYMEAEL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S ++ P + + K+T+ AF RRKTL +L+ Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRATPAVEVTDEKEFFKLTKAAFQLRRKTLWNNLQNS 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274 G++ L + I+ R E LS+ +F R++N Sbjct: 249 YGKDEKTKEWLKASLAASEIDPTRRGETLSLAEFARLSN 287 >gi|325981519|ref|YP_004293921.1| dimethyladenosine transferase [Nitrosomonas sp. AL212] gi|325531038|gb|ADZ25759.1| dimethyladenosine transferase [Nitrosomonas sp. AL212] Length = 254 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 133/261 (50%), Gaps = 15/261 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL D I+ KI +IEIG G G LT+ LL + V+E D+ Sbjct: 5 PRKRFGQNFLFDQYIINKIITEFYPRKDDRIIEIGPGLGALTRPLLQ-AIDHLHVVEIDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 LK I H N L I DAL+ DF N +RII NLPYNI T LLF+ Sbjct: 64 DIVDKLK-IEFSHEN-LTIHAADALQFDFSALGN---QMRIIGNLPYNISTPLLFHL--- 115 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + + QKEV ER+ + YGRLSV+ +R +FD+ F P PK Sbjct: 116 SQFSEHILDMHFMLQKEVVERMVGVPGTSDYGRLSVMLQYRFDMEYVFDVPAESFRPQPK 175 Query: 201 VTSTVIHFIPHLNPIPCCL---ESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 V S ++ IP PIP + E+L +I AF +RRKTLR +L++ I+ Sbjct: 176 VESAIVRMIP--RPIPLSMTVDETLFSQIVLAAFSQRRKTLRNALQQYLTVEDFSALNID 233 Query: 257 TNLRAENLSIEDFCRITNILT 277 + LRAENL +E F IT+ LT Sbjct: 234 SGLRAENLPVEKFVAITHFLT 254 >gi|313889811|ref|ZP_07823453.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN 20026] gi|313121856|gb|EFR44953.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN 20026] Length = 290 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 144/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFLAEQAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +V+ E D + PIL + N + +I D LK D + F N PI+++ANLP Sbjct: 70 -EVMAFEIDDRLLPILAETLRDFDN-IRVINQDILKADLQTQIQGFKNPELPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAKPNTKAYGSLSIAVQYYMAAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++ + F RRKTL +L Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFIHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L AGI+ N+R E L+IE+F ++ + L Sbjct: 245 FGKSEETKKKLEEALELAGIKANIRGEALTIEEFGKLADAL 285 >gi|71891913|ref|YP_277643.1| dimethyladenosine transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|122064283|sp|Q493R7|RSMA_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71796019|gb|AAZ40770.1| dimethyladenosine transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 267 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 143/276 (51%), Gaps = 17/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I +I KK+ Q FL D N++ I ++ ++EIG G G LT+ +L + Sbjct: 1 MKKIYYKNHLIKKKW-SQVFLKDQNVIDTIVKTINPKKHQKILEIGPGLGALTKQILNIA 59 Query: 70 -ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIAN 124 +I+IE+D L + ++ ++ I+ D + +F F++S + R+I N Sbjct: 60 DLDSLILIERDSNLVNRLVQMFNK---KINILHQDIMTTNF---FDLSHKVGQKLRLIGN 113 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI T L+ + + + +FQKEV R+ A N YGRLS++T + K Sbjct: 114 LPYNIATELI---VYLFQYTNVIYDMHFMFQKEVATRLYANPNKKEYGRLSIITQYHCKV 170 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLK 242 + I FFP PKV S V+ +PH N P P + L +T+ AF +RRKTLR SL Sbjct: 171 VPLLTIPATSFFPIPKVESMVMRLLPHTNTPYPIVNIGKLSSLTKLAFRQRRKTLRNSLS 230 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E + Q GI LRAEN++I +C + N+L + Sbjct: 231 TFFNETEITQKGINPALRAENITINQYCTLANMLNN 266 >gi|319891446|ref|YP_004148321.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius HKU10-03] gi|317161142|gb|ADV04685.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius HKU10-03] gi|323465384|gb|ADX77537.1| dimethyladenosine transferase [Staphylococcus pseudintermedius ED99] Length = 296 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 152/278 (54%), Gaps = 22/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69 + +L+ Y KK +GQNFL+D+NI+ +I ++SG +D +T VIEIG G G+LT+ L Sbjct: 13 RALLNQYGFNFKKSLGQNFLIDVNIINRIIDASG-IDHMTGVIEIGPGMGSLTEQLAK-N 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+ V+ E DQ+ P+L D S + N + +I +D LK + ++ + I ++ANL Sbjct: 71 AQHVLAFEIDQRLIPVLDDTLSPY-NNVTVINEDILKANVAEAIQQHLSHCEKIMVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + D + ++ QKEVGER+ AQ + YG LS++ + T+ + Sbjct: 130 PYYITTPILLTLLEQDLN---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETS 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S V+ + +PI + K+T+ AF +RRKT+ + + Sbjct: 187 RVLTVPKTVFMPPPNVDSIVVKLMKRESPIVDVDNPNAFFKMTKGAFSQRRKTIYNNYQN 246 Query: 244 L---GGE------NLLHQAGIETNLRAENLSIEDFCRI 272 L G E L +A I+ R E LSI+++ R+ Sbjct: 247 LFENGKEQKETIMQWLERADIDPKRRGETLSIQEYARL 284 >gi|239628929|ref|ZP_04671960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519075|gb|EEQ58941.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 288 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 21/291 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N H+++ I+ Y+ +K GQNFL+D ++L KI ++G V+EIG G G +T Sbjct: 4 LGNPKHTIE-IIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITKEDCVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L R V+ +E D PIL + + N + +I +D LK+D K +N PI Sbjct: 63 QYLAEHAGR-VVAVEIDTNLLPILDETLKGYDN-VTVINNDILKLDINKLVDEYNGGRPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ D +++T++ QKEV +R+ S YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFEGDVP---IDNVTVMVQKEVADRMQVGPGSKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI + P P +E K K+ + +F +RRKT Sbjct: 178 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRYKEP-PVKVEDPKLMFKLVRASFNQRRKT 236 Query: 237 LRQSLKRLGGENLLHQAGIET--------NLRAENLSIEDFCRITNILTDN 279 L+ L + +E ++R E L++E F R++N T+N Sbjct: 237 LQNGLNNSPDIPYTKEQIVEAIESLQVSPSVRGEALTLEQFARLSNYFTEN 287 >gi|302390854|ref|YP_003826674.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501] gi|302202931|gb|ADL11609.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501] Length = 290 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 149/281 (53%), Gaps = 18/281 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL I KK +GQNFL+D NI+ KI S+ VIEIG G G+LTQ L GA Sbjct: 12 REILEENGIQLKKSLGQNFLVDRNIIDKIIVSADLTSYDHVIEIGPGIGSLTQRLAE-GA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYN 128 + V IE D++F IL++ S + N + IQ DAL+ DFE+ S I+++ANLPY Sbjct: 71 KAVWAIELDERFIKILEENLSNY-NNVNFIQADALEYDFEQLLTKLSGESIKVVANLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMM 187 I T ++ + PF E + ++ QKEV ERI A ++ YG LS+ + ++ + Sbjct: 130 ITTPIIMRLLEEKL--PF-ERVVVMVQKEVAERIVATPEDGKKYGSLSLAVRYYSQPEIT 186 Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG 245 + VF P PKV S ++ I P+ E L K+ Q AF +RRKT+R SL + Sbjct: 187 GTVPRTVFMPQPKVDSAIVKMEIRDKPPVEVKDEELLFKVIQAAFQQRRKTIRNSLSKAA 246 Query: 246 GENL--------LHQAGIETNLRAENLSIEDFCRITNILTD 278 +L L + IE+ R E L +E F ++N + D Sbjct: 247 NLDLKRDLVDQALDKVDIESRRRGEKLDLERFTALSNSIFD 287 >gi|298480326|ref|ZP_06998524.1| dimethyladenosine transferase [Bacteroides sp. D22] gi|298273607|gb|EFI15170.1| dimethyladenosine transferase [Bacteroides sp. D22] Length = 266 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R + V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F +S HVF P PK Sbjct: 122 KDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K++ + F +RRKTLR S+K + G++ I N Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+ +F +TN Sbjct: 239 RPEQLSVAEFIDLTN 253 >gi|138893714|ref|YP_001124167.1| dimethyladenosine transferase [Geobacillus thermodenitrificans NG80-2] gi|166221668|sp|A4IJB8|RSMA_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|134265227|gb|ABO65422.1| Dimethyladenosine transferase [Geobacillus thermodenitrificans NG80-2] Length = 293 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ Y KK +GQNFL+D NIL+KI +++G IEIG G G LT+ L A Sbjct: 12 KEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQ-LARRA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E D + PIL D S + N + II D LK D E+F +S + ++ANL Sbjct: 71 KKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRM-VVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ + P + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 129 PYYVTTPIIMKLLT-ERLP--IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL- 241 ++ + VF P P V S VI +P P +E + ++ + +F +RRKTL +L Sbjct: 186 VVMTVPRTVFMPQPNVDSAVIRLTKRSHP-PVAVEDEEVFFQVVRASFAQRRKTLLNNLL 244 Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ E L GI+ R E L + +F ++N L Sbjct: 245 NNLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 287 >gi|238795194|ref|ZP_04638781.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909] gi|238725481|gb|EEQ17048.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909] Length = 232 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 132/235 (56%), Gaps = 18/235 (7%) Query: 51 VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDAL 105 ++EIG G G LT+ + AR + VIE D+ L + HP ++L I Q DA+ Sbjct: 1 MVEIGPGLGALTE---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAM 53 Query: 106 KVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 KV+F + ++ P+R+ NLPYNI T L+F+ S + + + QKEV R+ A Sbjct: 54 KVNFSELAELAGQPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVA 110 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESL 222 NS YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + L Sbjct: 111 GPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRML 170 Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++T +AF +RRKT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 171 SRVTTQAFNQRRKTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 225 >gi|255102733|ref|ZP_05331710.1| dimethyladenosine transferase [Clostridium difficile QCD-63q42] gi|255308554|ref|ZP_05352725.1| dimethyladenosine transferase [Clostridium difficile ATCC 43255] Length = 289 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ K ++ Y K +GQNFL+D NI+ KI + G +IE+G G G LT+ + Sbjct: 8 NATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMGK 67 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIAN 124 + A KV+ IE D+ PILKD S N E++ D LKVD ++ P++++AN Sbjct: 68 I-AEKVVAIEIDRNLIPILKDTLSDLDN-TEVVNQDILKVDIQELVKDKLNGGPVKLVAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T ++ ++ D P + + ++ QKEV +R+ A + YG LS+ + Sbjct: 126 LPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAIPGTKDYGALSIAVQYYCDT 182 Query: 185 TMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ H+F P P V STVI H + K + +FG+RRKTL SL Sbjct: 183 EIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRKTLLNSLG 242 Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 LG N +L +A I+ R E LSIE+F ++NI+ Sbjct: 243 GLGFLNKDEIREVLKEANIDEKRRGETLSIEEFSVLSNII 282 >gi|15616761|ref|NP_239973.1| dimethyladenosine transferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386908|sp|P57241|RSMA_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|25286065|pir||C84946 dimethyladenosine transferase [imported] - Buchnera sp. (strain APS) gi|10038824|dbj|BAB12859.1| dimethyladenosine transferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 273 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 15/265 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P K GQNFL++ + +K I + T++EIG G LT+ + L ++IVIE Sbjct: 7 KHLPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAALTKPMCEL-LEELIVIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRL--- 133 DQ +LK S ++L + +AL +F F+ IRI NLPYNI T L Sbjct: 66 IDQDLLFLLKKRSFY--SKLIVFYQNALNFNFLNLFHKKKQLIRIFGNLPYNISTSLIIF 123 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF I + + + QKEV ER+ + + YGRLS+++ + ++ ++SP Sbjct: 124 LFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKILLNVSPE 177 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S I+ PH N + L IT++AF RRK LR SLK L E L Sbjct: 178 DFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLFSEKELI 237 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 + I +NLRAEN+S+ +C++ N L Sbjct: 238 KLEINSNLRAENVSVSHYCKLANYL 262 >gi|260171826|ref|ZP_05758238.1| dimethyladenosine transferase [Bacteroides sp. D2] gi|315920138|ref|ZP_07916378.1| dimethyladenosine transferase [Bacteroides sp. D2] gi|313694013|gb|EFS30848.1| dimethyladenosine transferase [Bacteroides sp. D2] Length = 266 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R + V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F +S HVF P PK Sbjct: 122 KDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K++ + F +RRKTLR S+K + G++ I N Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+ +F +TN Sbjct: 239 RPEQLSVAEFIDLTN 253 >gi|55980052|ref|YP_143349.1| dimethyladenosine transferase [Thermus thermophilus HB8] gi|62900482|sp|Q5SM60|RSMA_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226192685|pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 gi|226192686|pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P43212 gi|226192687|pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P43212 gi|226192688|pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P43212 gi|226192689|pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|226192690|pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|226192691|pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|226192692|pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|55771465|dbj|BAD69906.1| dimethyladenosine transferase [Thermus thermophilus HB8] Length = 271 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 144/283 (50%), Gaps = 23/283 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ S++ +L + + K GQNFL+ L++I E++ G V E+G G G Sbjct: 1 MSKLASPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V IEKD + P+L++ S P RL + DAL +E+ S Sbjct: 60 LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLPVRL--VFQDALLYPWEEVPQGSL--- 113 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T L+ + + L L QKEV ER+TA+ +P YG L++ Sbjct: 114 LVANLPYHIATPLVTRLLKTGRF----ARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238 A +FD+ P FFP PKV S+++ P L+ L ++ + AFGKRRKTL Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPT-----GALDDPGLFRLVEAAFGKRRKTLL 224 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L G E L G+ +RAE L +E F R+ L Sbjct: 225 NALAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267 >gi|308179573|ref|YP_003923701.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045064|gb|ADN97607.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y + KK +GQNFL D N+L I ++ VIEIG G G LT+ L A Sbjct: 15 RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL-ARAA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 V+ E D + PIL + + + N + ++ D LK D + + P++++ANLP Sbjct: 74 HHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKLVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N ++ D +E++ ++ QKEV +R+ A+ + YG L++ +R A M Sbjct: 133 YYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYRMAAEM 189 Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + VF PSP V S ++ +P +P + K+ + F RRK L +L+ L Sbjct: 190 AMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRRKNLWNNLQSL 249 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G + L A I+ +RAE L++++F +T+ L Sbjct: 250 FGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290 >gi|269960921|ref|ZP_06175291.1| dimethyladenosine transferase [Vibrio harveyi 1DA3] gi|269834361|gb|EEZ88450.1| dimethyladenosine transferase [Vibrio harveyi 1DA3] Length = 269 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L L+++ +E F +RRKT+R K L +L + GI Sbjct: 184 PKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEELGIN 243 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 ++R ENL+++ F + N L DN Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266 >gi|302871038|ref|YP_003839674.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis OB47] gi|302573897|gb|ADL41688.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis OB47] Length = 282 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 151/270 (55%), Gaps = 13/270 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L +L Y++ P K +GQNFL+D N+++KI S + +G VIEIGAGPG LT + L Sbjct: 9 ELLNLLKKYELSPNKKLGQNFLIDENVVRKIILFSQT-EGKEVIEIGAGPGTLT-IYLAK 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV +E D++ +LK++ Q+ + ++I+ D L+++ K + I ++ NLPY Sbjct: 67 TAQKVFAVEIDKKILNVLKEVC-QNLSNVQIVNSDFLELNV-KNLTKGNKIYVVGNLPYY 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + +++LF E T++ QKEV +R+ A+ + YG L+V + + F Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAEPGTKEYGNLTVAMNFYCEIEDYF 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------K 242 +S +VF+P P+V STV+ + + KI F RRKT+ +L + Sbjct: 182 YVSKNVFYPKPEVDSTVLRARFKIEKPNIDEKKFFKIVHACFSTRRKTILNALSNHFDIE 241 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRI 272 + + +++ A ++ NLRAE+LS++D+ R+ Sbjct: 242 KDKLKRIINMAEVDENLRAEDLSLDDYIRL 271 >gi|190572863|ref|YP_001970708.1| dimethyladenosine transferase [Stenotrophomonas maltophilia K279a] gi|190010785|emb|CAQ44394.1| putative dimethyladenosine transferase [Stenotrophomonas maltophilia K279a] Length = 267 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 10/256 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL D + + KI + DG ++EIG G G +T LL + K+ VIE D+ Sbjct: 17 KKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +++ L I+ D L+VDF + PIR++ NLPYNI + +LF+ + Sbjct: 76 LIAPLT-AAAEPLGELTIVHRDVLRVDFTEL-AAGQPIRLVGNLPYNISSPILFHALEHA 133 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PKV Sbjct: 134 A---VIRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPKV 190 Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S V+ +P +P + K+ + + AFG+RRKTLR +L + AG+ + Sbjct: 191 DSAVVRLVPR-DPATISISDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFVAAGVRPD 249 Query: 259 LRAENLSIEDFCRITN 274 RAE L + +F + N Sbjct: 250 ARAEQLDVAEFIALAN 265 >gi|19745394|ref|NP_606530.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS8232] gi|209558786|ref|YP_002285258.1| dimethyladenosine transferase [Streptococcus pyogenes NZ131] gi|306828033|ref|ZP_07461298.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782] gi|27151569|sp|Q8P2N8|RSMA_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|19747502|gb|AAL97029.1| putative dimethyladenosine transferase [Streptococcus pyogenes MGAS8232] gi|209539987|gb|ACI60563.1| Dimethyladenosine transferase [Streptococcus pyogenes NZ131] gi|304429749|gb|EFM32793.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782] Length = 290 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 245 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|323128061|gb|ADX25358.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 290 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQIQIKQFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 245 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|126662912|ref|ZP_01733911.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38] gi|126626291|gb|EAZ96980.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38] Length = 268 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 105/265 (39%), Positives = 143/265 (53%), Gaps = 17/265 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVI 76 K+ KK++GQ+FL D +I K IA++ SL+G ++EIG G G LT+ LL + VI Sbjct: 12 KVTAKKHLGQHFLKDESIAKDIADTL-SLEGYDKILEIGPGMGVLTKYLLD-KPTETFVI 69 Query: 77 EKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D++ L H +LE II D LK D + FN P II N PYNI T+++ Sbjct: 70 EIDKESVEYL----GVHYPKLENHIISKDFLKYDLNEVFN-KEPFAIIGNFPYNISTQIV 124 Query: 135 FNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + D P F +FQKEV +RI +K S YG LSVLT +A +F + P Sbjct: 125 FKTLEMRDQIPEFAG----MFQKEVAQRICEKKGSKVYGILSVLTQAFYEAEYLFTVPPE 180 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S V+ N +PC + ++ + AF +RRKTLR SLK + L Sbjct: 181 VFNPPPKVDSGVLRLRRKENYSLPCDEKMFFRVVKTAFQQRRKTLRNSLKSFNFSDNLKL 240 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 I +LR E L++E F IT +T Sbjct: 241 DTI-FDLRPEQLTVEQFIDITQKIT 264 >gi|15674442|ref|NP_268616.1| dimethyladenosine transferase [Streptococcus pyogenes M1 GAS] gi|71910036|ref|YP_281586.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005] gi|27151597|sp|Q9A1I0|RSMA_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13621537|gb|AAK33337.1| putative dimethyladenosine transferase [Streptococcus pyogenes M1 GAS] gi|71852818|gb|AAZ50841.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005] Length = 290 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 245 FGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|118088399|ref|XP_426165.2| PREDICTED: similar to transcription factor B1, mitochondrial [Gallus gallus] Length = 350 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 27/291 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ +++ +K + QNFLLDL + KI +G L V E+G GPG +T+ +L Sbjct: 17 TVGEIIKLFRLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 G +++++EKD +F P L+ +S P ++ I+ D L EK F + I Sbjct: 77 GVEQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPNHLKKNWEDEPPNI 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W +S P + +TL FQKEV ER+TA RL Sbjct: 137 HIIGNLPFSVSTPLIVKWLENVSKRDGPFIYGRTQMTLTFQKEVAERLTANTGGKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S+++ F I F P P V V+HF P + P I E ++K+ Q F R Sbjct: 197 SIMSQHLCTVDNCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVFQFR 256 Query: 234 RKTL----------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 RK R+ LK+ E L+ A ++ LR L++ F + N Sbjct: 257 RKYCYRGVEILFPERERLKKT--EQLMMAADVDPTLRPFQLTMAHFRNLCN 305 >gi|254555556|ref|YP_003061973.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1] gi|300767100|ref|ZP_07077013.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|254044483|gb|ACT61276.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1] gi|300495638|gb|EFK30793.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 296 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y + KK +GQNFL D N+L I ++ VIEIG G G LT+ L A Sbjct: 15 RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL-ARAA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 V+ E D + PIL + + + N + ++ D LK D + + P++++ANLP Sbjct: 74 HHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKLVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N ++ D +E++ ++ QKEV +R+ A+ + YG L++ +R A M Sbjct: 133 YYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYRMAAEM 189 Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + VF PSP V S ++ +P +P + K+ + F RRK L +L+ L Sbjct: 190 AMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRRKNLWNNLQSL 249 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G + L A I+ +RAE L++++F +T+ L Sbjct: 250 FGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290 >gi|295099321|emb|CBK88410.1| dimethyladenosine transferase [Eubacterium cylindroides T2-87] Length = 289 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 147/275 (53%), Gaps = 17/275 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I Y + KK GQNF+++ +++KIA+++ V EIG G G LTQ L T+ + Sbjct: 12 KEIQEKYNVFTKKSYGQNFIIEPRVVEKIADAAIKSKDELVFEIGPGIGALTQYL-TMKS 70 Query: 71 RKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANL 125 +VI E D + +L+ +I H L+I+ D LKVD +K+ I +NL Sbjct: 71 NQVIAFEIDDRLPEVLENEIGYDH---LKIVLKDILKVDINEEIKKYRKPDQKIVFASNL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +LF A T P E +T++ QKEV +R A +N Y LSV+T +R Sbjct: 128 PYYITTPILFKLFEA-TEP--IERITVMMQKEVADRFLASQNDKEYNALSVITQYRCDIK 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + D+S HVF+PSP V S V+ F H E K+ + F +RRKT+ + + L Sbjct: 185 KVMDVSRHVFWPSPNVDSAVLQFTFHHKYNLKDEELFFKMVKACFVQRRKTIYNNFQTLF 244 Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 + LL +A +++++RA+ ++EDF R+ + Sbjct: 245 KDKEEALQLLEKAQLKSSIRAQQCTLEDFIRLYEV 279 >gi|253700557|ref|YP_003021746.1| dimethyladenosine transferase [Geobacter sp. M21] gi|251775407|gb|ACT17988.1| dimethyladenosine transferase [Geobacter sp. M21] Length = 275 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 145/278 (52%), Gaps = 17/278 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK GQNFL+D ++L +I ++E+G G G L+++L GAR + +E Sbjct: 3 KIRAKKEFGQNFLVDDSVLTRIVACVAPTADDCILEVGPGRGALSRLLAESGAR-FLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134 D++ P+LK + N +EI D L+VD ++ ANLPYNI +++L Sbjct: 62 WDRELLPLLKAEFATAQN-VEIGHGDILRVDLPLLLGSRVEGKKWKVAANLPYNISSQVL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F ++ +E L L+ QKEVG+R+TA YG L+VL F + P Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177 Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ F+P P + E L +++ + AF +RRKTL SL+ G ++ Sbjct: 178 FRPVPKVDSAVLSFLPLPGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L ++GI+ R E LS+E+F R+T L + +A Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFARLTRELLAGKTLA 275 >gi|28377358|ref|NP_784250.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1] gi|33516929|sp|Q88Z93|RSMA_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28270190|emb|CAD63089.1| dimethyladenosine transferase (putative) [Lactobacillus plantarum WCFS1] Length = 296 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y + KK +GQNFL D N+L I ++ VIEIG G G LT+ L A Sbjct: 15 RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL-ARAA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 V+ E D + PIL + + + N + ++ D LK D + + P++++ANLP Sbjct: 74 HHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKLVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N ++ D +E++ ++ QKEV +R+ A+ + YG L++ +R A M Sbjct: 133 YYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYRMAAEM 189 Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + VF PSP V S ++ +P +P + K+ + F RRK L +L+ L Sbjct: 190 AMVVPRTVFVPSPNVDSAIVKLTALPLRTHVPFDEAAFFKVVKAGFAHRRKNLWNNLQSL 249 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G + L A I+ +RAE L++++F +T+ L Sbjct: 250 FGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290 >gi|197294383|ref|YP_001798924.1| dimethyladenosine transferase [Candidatus Phytoplasma australiense] gi|226732607|sp|B1V9I5|RSMA_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171853710|emb|CAM11607.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) [Candidatus Phytoplasma australiense] Length = 284 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/267 (37%), Positives = 145/267 (54%), Gaps = 24/267 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK GQNFL D+N+LKKI S +L G VIEIG G G+LT L+T A ++ E D Sbjct: 5 PKKKYGQNFLKDVNLLKKIV-SKANLKGKNVIEIGPGKGSLTN-LITKEANLLLAYEID- 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 P LK +++II DD LK DF+ +F+I+ + +I+NLPY I T +LF Sbjct: 62 ---PTLKPFLVFDTTKIKIIYDDFLKRDLVKDFDNYFSINCQLSLISNLPYYITTTILFK 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I P TL+ QKEVG R+ AQ NS +Y LSV+T + + ++ H+FF Sbjct: 119 IIQT----PQIVDATLMMQKEVGMRLMAQPNSKNYNALSVITQYFFNIEKIQEVKSHMFF 174 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRL----GGEN 248 P PKV S V+ H + S +K + AF ++RKTL +L + E Sbjct: 175 PQPKVDSVVLKLSKHKSDFNTFSTSSQKNFITFVKAAFKQKRKTLLNNLSSVFLLPKTEI 234 Query: 249 LL--HQAGIETNLRAENLSIEDFCRIT 273 +L Q + T +RAE +++++F +I+ Sbjct: 235 ILFFEQNKLLTKIRAEEITLKEFQKIS 261 >gi|90416846|ref|ZP_01224775.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2207] gi|90331193|gb|EAS46437.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2207] Length = 266 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 143/264 (54%), Gaps = 12/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL+D +I+ +I + G +IEIG G +T+ L+ + V+E D+ Sbjct: 8 RKRFGQNFLVDQHIIGQIVAAIGPSADDNLIEIGPGTAAITEHLIQ-RCPTMKVVELDRD 66 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + + +P+ I DALK DF +F + +R++ NLPYNI T +LF+ + Sbjct: 67 LVGFLTEKFADYPD-FSIYSGDALKTDFAQFHD-GRQLRLVGNLPYNISTPILFHLLKNR 124 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T + + + Q+EV +R++A S YGRLS++ + + + + P F P+PKV Sbjct: 125 T---LIKDMHFMLQREVVDRLSAAPGSKTYGRLSIMVQYHCRVMPLIPVPPSAFRPAPKV 181 Query: 202 TSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S ++ PH + PC E+ L +I AF +RRKTLR ++ + +A ++ + Sbjct: 182 QSAIVRLKPH-STKPCLAENEELLSQIVSLAFQQRRKTLRNGIRAYAEHLVGVEAVVDLS 240 Query: 259 LRAENLSIEDFCRITNILTDNQDI 282 RAE+LS+ DF ++N + NQ I Sbjct: 241 RRAEDLSVADFVALSNYI--NQRI 262 >gi|260584339|ref|ZP_05852086.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633] gi|260157857|gb|EEW92926.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633] Length = 306 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ + I KK +GQNFL++ NIL K+ + + VIEIG G G LTQ L A Sbjct: 25 REIMERHGIKVKKSLGQNFLIEPNILTKMLDVADVNKETNVIEIGPGIGALTQRL-ARAA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +KV+ E D + P+L+D S H N + +I +D LKVD E + F++ + ++ANLP Sbjct: 84 KKVLAFEIDGRLIPVLEDTLSDHDN-VTVIHEDILKVDLETVIQEHFDVEERLLVVANLP 142 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ + + + P + ++ QKEV ER+TAQ NS YG L+V + A + Sbjct: 143 YYITTPIIMDLLESGL--PI-DGFAMMMQKEVAERMTAQPNSKAYGSLTVAIQYWCHAKI 199 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241 F + VF P+P V S ++ P+ + + + +F +RRKTL +L Sbjct: 200 GFIVPKTVFNPAPNVDSAILVLERREEPLVTVKDEAFFFDLVKNSFVQRRKTLWNNLVKA 259 Query: 242 ---KRLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 +L E + L IE N RAE L+IE+F ++N L Sbjct: 260 YVPGKLTKEQIQEALDSVSIEPNRRAETLTIEEFAALSNQL 300 >gi|71902882|ref|YP_279685.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180] gi|94989731|ref|YP_597831.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10270] gi|251783338|ref|YP_002997643.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|118600903|sp|Q1JIN6|RSMA_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365851|sp|Q48VC6|RSMA_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71801977|gb|AAX71330.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180] gi|94543239|gb|ABF33287.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10270] gi|242391970|dbj|BAH82429.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 298 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 18 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 77 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 252 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 253 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|94987854|ref|YP_595955.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429] gi|94991737|ref|YP_599836.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS2096] gi|118600901|sp|Q1JDL6|RSMA_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600902|sp|Q1JNI8|RSMA_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94541362|gb|ABF31411.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429] gi|94545245|gb|ABF35292.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS2096] Length = 298 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 18 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 77 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 252 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 253 FGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|239825621|ref|YP_002948245.1| dimethyladenosine transferase [Geobacillus sp. WCH70] gi|259494250|sp|C5D363|RSMA_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|239805914|gb|ACS22979.1| dimethyladenosine transferase [Geobacillus sp. WCH70] Length = 291 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 22/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL+KI + + D IEIG G G LT+ L A Sbjct: 12 REILEKYGFSFKKSLGQNFLIDTNILRKIVDFAELSDETGAIEIGPGIGALTEQ-LARRA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E DQ+ PIL+D S + N + II D LK D + F + I ++ANLP Sbjct: 71 KKVVAFEIDQRLLPILEDTLSPYGN-IRIIHQDVLKADIHRVISEEFTGMTDIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ ++ D P + ++ QKEV +R+ A+ + YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLT-DRLP--IRGMVVMLQKEVADRLAAKPGTKDYGSLSIAIQYYTEAET 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S VI I P P +E ++ + +F +RRKT+ +L Sbjct: 187 VMTVPRTVFIPQPNVDSAVIRLIKRKQP-PVKVEDEAFFFQVVRASFAQRRKTILNNLVN 245 Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E +L + I+ R E L++E+F ++N L Sbjct: 246 NLPNGKAMKEQIERVLTETDIDPRRRGETLTMEEFAALSNAL 287 >gi|188992955|ref|YP_001904965.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. B100] gi|226732640|sp|B0RUI3|RSMA_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|167734715|emb|CAP52925.1| Dimethyladenosine transferase [Xanthomonas campestris pv. campestris] Length = 262 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 138/265 (52%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLLRKHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L D ++ +L+II D L VDF + +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + + QKEV +R+ A S YGRLSV+ + T +F + P Sbjct: 119 LFHALDHASA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P + ++ K+ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 AG+ + RAE L + DF R+ N+ Sbjct: 235 EAAGVRPDARAEQLEVADFIRLANV 259 >gi|156973129|ref|YP_001444036.1| dimethyladenosine transferase [Vibrio harveyi ATCC BAA-1116] gi|166221714|sp|A7MWC6|RSMA_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|156524723|gb|ABU69809.1| hypothetical protein VIBHAR_00808 [Vibrio harveyi ATCC BAA-1116] Length = 269 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L L+++ +E F +RRKT+R K L +L + G+ Sbjct: 184 PKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 ++R ENL+++ F + N L DN Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266 >gi|160882017|ref|YP_001560985.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg] gi|189028804|sp|A9KL97|RSMA_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160430683|gb|ABX44246.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg] Length = 290 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 149/280 (53%), Gaps = 19/280 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L+ Y+ I +K GQNFL+D ++L+KI S+ V+EIG G G +TQ L AR+ Sbjct: 13 VLNRYRFIFQKKFGQNFLIDTHVLEKIIRSAEITKDDLVLEIGPGIGTMTQYLCE-NARE 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 V+ +E D+ PIL+ + + + II +D LKVD + N PI+++ANLPY I Sbjct: 72 VVAVEIDKNLIPILEQDTLSSYDNVTIINEDILKVDINQIVKEKNGGKPIKVVANLPYYI 131 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ A +++T++ QKEV +R+ + S YG LS+ + ++ + Sbjct: 132 TTPIIMGLFEAHVP---IDNITVMVQKEVADRMQSGPGSKDYGALSLAVQYYADPYIVAN 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSL------ 241 + P+ F P P V S VI H + P+ E+L K+ + +F +RRKTL L Sbjct: 189 VPPNCFMPRPNVGSAVIRLTLHQDAPVKVKNENLLFKLIRASFNQRRKTLANGLNNSPEI 248 Query: 242 ---KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K + E + + G+ +R E L++E F ++ +I+ + Sbjct: 249 SLPKEMISE-AIEELGVVATIRGEALTLEQFAKLADIIDE 287 >gi|154505613|ref|ZP_02042351.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149] gi|153794052|gb|EDN76472.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149] Length = 307 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 21/291 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y + +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 21 TLGNPQNTI-AVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTM 79 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KV +E D+ PIL+D + N +++I +D LKVD + N P Sbjct: 80 TQ-YLACAAGKVAAVEIDKALIPILEDTLDGYDN-VQVINEDVLKVDIAELAKQENEGKP 137 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + P +S+T++ QKEV +R+ + YG LS+ Sbjct: 138 IKVVANLPYYITTPIIMGLFE-NHVP--MKSITVMVQKEVADRMQVGPGTKDYGALSLAV 194 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + K ++ ++ P+ F P PKV S VI + P P ++ K +I + +F +RRK Sbjct: 195 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLDRYEEP-PVQVKDEKLMFRIIRASFNQRRK 253 Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL LK + E + G ++R E L++E+F + N L+D Sbjct: 254 TLANGLKNSPELDFTKEQIEAAIGHLGRGASIRGEALTLEEFAELANYLSD 304 >gi|94993613|ref|YP_601711.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10750] gi|118600904|sp|Q1J8J4|RSMA_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94547121|gb|ABF37167.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10750] Length = 298 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 18 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 77 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVEDEDFFFRVSRLSFVHRRKTLWNNLTSH 252 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 253 FGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|255658924|ref|ZP_05404333.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544] gi|260848874|gb|EEX68881.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544] Length = 292 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 147/278 (52%), Gaps = 17/278 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + + K +GQNFL+D I++ I E++ G V+EIG G G LTQ L GA Sbjct: 22 ILKAFGLRMSKKLGQNFLIDARIVQGIVEAAEIEPGDRVLEIGPGIGTLTQGLAEAGA-D 80 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V +E D++ +LK+ + N + I+ D LKV+ + +P ++ ANLPY I T Sbjct: 81 VTAVELDKKLPTVLKETLKAYDN-VRIVPGDILKVNIPEIMG-DAPFKVAANLPYYITTP 138 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + + P +T++ Q+EV ER+TA+ S YG LSV + T+ ++ D+ P Sbjct: 139 ILMTLL--ERRLPITHMVTMV-QREVAERMTAKPGSRIYGALSVAVQYYTEPQIVLDVPP 195 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P+V S V+ P + ++ + AFG+RRKTL +LK GG Sbjct: 196 RSFIPAPEVMSVVVSCRVRKEPAVAVQDEKLFFRVVKAAFGQRRKTLMNALK--GGGFSK 253 Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + L Q+GI+ R E L++E+F R+ + ++ Sbjct: 254 EAVRDALEQSGIDPTRRGETLTLEEFGRLADAFAAEEN 291 >gi|148652714|ref|YP_001279807.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1] gi|148571798|gb|ABQ93857.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1] Length = 296 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/273 (34%), Positives = 142/273 (52%), Gaps = 18/273 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 P+K GQNFL D +I+ +I ++ G ++EIG G G LT+ LL + A VI +++D Sbjct: 23 PRKRFGQNFLHDASIISEIVDAIGLNRDDNLVEIGPGMGALTEPLLEQVDAMTVIELDRD 82 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNIGTRLLF 135 ++ ++ HPN I+ +A++ D+ ++ S +R++ NLPYNI T LLF Sbjct: 83 LAGSLRIRIGANSHPN-FTIVNANAMQFDYHSLYDADSETPKKLRVVGNLPYNISTPLLF 141 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV ERITA+ S YGRLSV+ + + + F Sbjct: 142 TLLE---YADIIEDMHFMLQKEVVERITAEVGSKIYGRLSVIMQYFCDTQYLLTVPRGAF 198 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR------LGGE 247 P PKVTS V PH + P+ E L + +E F RRKTLR K+ L E Sbjct: 199 NPPPKVTSAVFRLRPHQVKPVQADDEKLFALVVRETFNHRRKTLRAIFKQSSLMPTLTDE 258 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L GI+ N R E L + DF ++N++ Q Sbjct: 259 DLA-SIGIDGNARPETLDVNDFVALSNLVIAKQ 290 >gi|293557287|ref|ZP_06675834.1| dimethyladenosine transferase [Enterococcus faecium E1039] gi|291600574|gb|EFF30879.1| dimethyladenosine transferase [Enterococcus faecium E1039] Length = 294 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 153/284 (53%), Gaps = 20/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L A Sbjct: 14 KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAK-HA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E D + P+L D + N + I+ D LK D + F+ P++++ANLP Sbjct: 73 KQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ ++ + L ++ QKEV +RI+A+ + YG LS+ + +A++ Sbjct: 132 YYITTPIMMHFLESNL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S ++ P + + ++T+ AF +RRKTL +L+ Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G++ L AGI+ R E LS+++F ++N +++N Sbjct: 249 YGKDDQTKAWLAKSLGTAGIDPKRRGETLSLQEFAALSNAMSEN 292 >gi|255691159|ref|ZP_05414834.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565] gi|260623254|gb|EEX46125.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565] Length = 262 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 136/255 (53%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F +S HVF P PK Sbjct: 122 KDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + + C + K++ + F +RRKTLR S+K + G++ N Sbjct: 179 VKSAVIRMTRNEVQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDSLFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+E+F +TN Sbjct: 239 RPEQLSVEEFIDLTN 253 >gi|254522856|ref|ZP_05134911.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14] gi|219720447|gb|EED38972.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14] Length = 267 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 10/256 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL D + + KI + DG ++EIG G G +T LL + K+ VIE D+ Sbjct: 17 KKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +++ L I+ D L+VDF + PIR++ NLPYNI + +LF+ + Sbjct: 76 LIAPLT-AAAEPLGELTIVHRDVLRVDFTEL-AAGQPIRLVGNLPYNISSPILFHALEHA 133 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PKV Sbjct: 134 A---VVRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPKV 190 Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S V+ +P +P + K+ + + AFG+RRKTLR +L + AG+ + Sbjct: 191 DSAVVRLVPR-DPASIGINDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFIAAGVRPD 249 Query: 259 LRAENLSIEDFCRITN 274 RAE L + +F + N Sbjct: 250 ARAEQLDVAEFVALAN 265 >gi|153807426|ref|ZP_01960094.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185] gi|149129788|gb|EDM21000.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185] Length = 266 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 133/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + ++E+G G G LTQ L+ R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDPFPELPILEVGPGMGVLTQFLVK-KERPVKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL K +F +S HVF P PK Sbjct: 122 KDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K++ + F +RRKTLR S+K + G+ N Sbjct: 179 VKSAVIRMTRNDTQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDTLFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+E+F +TN Sbjct: 239 RPEQLSVEEFIDLTN 253 >gi|332971060|gb|EGK10030.1| dimethyladenosine transferase [Desmospora sp. 8437] Length = 294 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 150/280 (53%), Gaps = 19/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L+ + KK +GQ+FL D IL K+ E++G V+EIG G G LT+ L + A Sbjct: 14 RQLLAERGLRLKKSLGQHFLTDRRILDKMMEAAGLGPEAGVLEIGPGIGALTERL-AVEA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ +E D++ P+L + S P+ + I+Q D + +D + S I ++ANLP Sbjct: 73 GQVVAVELDERLIPVLSSLFSDQPH-VRIVQGDVMSLDLSRLLQDHLGDCSRISVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + + P + + ++ QKEV ER+TA S YG ++V T + + Sbjct: 132 YYVTTPILMRLLE-EKLP--LDRIVIMIQKEVAERLTASPGSKAYGSITVATRYYAETEW 188 Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLK-- 242 + + HVF P P+V S VI I P+ E+L ++ + AFG+RRKTL +L Sbjct: 189 VTKVPAHVFVPRPQVDSAVIRLKIRQRPPVEVRDEALLFRVIRAAFGQRRKTLLNALSTG 248 Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 + GE +L + GI+ R E LS+E+F ++N L Sbjct: 249 AVDGEGKETISRVLSETGIDPKRRGETLSLEEFALLSNRL 288 >gi|314932715|ref|ZP_07840085.1| dimethyladenosine transferase [Staphylococcus caprae C87] gi|313654545|gb|EFS18297.1| dimethyladenosine transferase [Staphylococcus caprae C87] Length = 296 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 145/278 (52%), Gaps = 22/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ KI ++S D VIE+G G G+LT+ L A Sbjct: 13 RALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLAK-NA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLP 126 +KV+ E DQ+ P+LKD + + N + II +D LK + K + I ++ANLP Sbjct: 72 KKVMSFEIDQRLIPVLKDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A + YG LS++ + T+ + Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S V+ + HL + E+ K+ + AF +RRKT+ + + Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQREEHLVQVDNE-EAFFKLAKAAFAQRRKTINNNYQN 246 Query: 244 LGGENLLHQAG---------IETNLRAENLSIEDFCRI 272 + H+A I+ R E L+I DF + Sbjct: 247 FFKDGKKHKASILDWLESAEIDPKRRGETLTIHDFANL 284 >gi|50913600|ref|YP_059572.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10394] gi|50902674|gb|AAT86389.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10394] Length = 298 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 18 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 77 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRRKTLWNNLTSH 252 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 253 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|306834382|ref|ZP_07467499.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338] gi|304423555|gb|EFM26704.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338] Length = 290 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N +++I +D LK D + +F N PI+I+ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKIVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFVVPRTVFIPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI +F ++ + L + Sbjct: 245 FGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|196250755|ref|ZP_03149442.1| dimethyladenosine transferase [Geobacillus sp. G11MC16] gi|196209705|gb|EDY04477.1| dimethyladenosine transferase [Geobacillus sp. G11MC16] Length = 478 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ Y KK +GQNFL+D NIL+KI +++G IEIG G G LT+ L A Sbjct: 197 KEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARR-A 255 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E D + PIL D S + N + II D LK D E+F +S + ++ANL Sbjct: 256 KKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRM-VVANL 313 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ + P + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 314 PYYVTTPIIMKLLT-ERLP--IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 370 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL- 241 ++ + VF P P V S VI +P P +E + ++ + +F +RRKTL +L Sbjct: 371 VVMTVPRTVFMPQPNVDSAVIRLTKRSHP-PVAVEDEEVFFQVVRASFAQRRKTLLNNLL 429 Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ E L GI+ R E L + +F ++N L Sbjct: 430 NNLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 472 >gi|293375923|ref|ZP_06622184.1| dimethyladenosine transferase [Turicibacter sanguinis PC909] gi|325838710|ref|ZP_08166625.1| dimethyladenosine transferase [Turicibacter sp. HGF1] gi|292645445|gb|EFF63494.1| dimethyladenosine transferase [Turicibacter sanguinis PC909] gi|325490760|gb|EGC93067.1| dimethyladenosine transferase [Turicibacter sp. HGF1] Length = 291 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 145/280 (51%), Gaps = 20/280 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ + KK GQNFL D NIL KI ++ D + VIEIG G G LT+ + A Sbjct: 11 KEIIEKHGFTFKKSFGQNFLTDTNILNKIVNAADLNDEVGVIEIGPGIGALTE-FIARKA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV+ E D + PIL + + + N +++I D LK D E+ F I ++ANLP Sbjct: 70 KKVVAYEIDPRLIPILAETLAPYDN-VKVIHQDILKADVASMIEEEFKDVKHIAVVANLP 128 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L I P W + QKEV ER++A S Y LS+ + T+A + Sbjct: 129 YYITTPILMGLIE-KKLPIDW--YVTMMQKEVAERLSANPGSKDYNALSIAVQYYTEAKI 185 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243 ++ VF P+P V S+V+ P +E+ +I AF +RRKT++ +L + Sbjct: 186 ALNVPKTVFIPAPNVDSSVVKLTKREQP-AVAVENEDFFLEIVHAAFKQRRKTIQNNLNQ 244 Query: 244 ----LGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276 L E+ LL +AGI + R E L+IE+F ++N+ Sbjct: 245 HFNDLAKEDVTKLLEEAGIVPSRRGETLTIEEFGHLSNVF 284 >gi|257865533|ref|ZP_05645186.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30] gi|257871870|ref|ZP_05651523.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10] gi|257875149|ref|ZP_05654802.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20] gi|257799467|gb|EEV28519.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30] gi|257806034|gb|EEV34856.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10] gi|257809315|gb|EEV38135.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20] Length = 295 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 148/280 (52%), Gaps = 21/280 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ + KK +GQNFL + NIL+KI E++G + VIE+G G G LT+ L A Sbjct: 14 KEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLAK-HA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 ++V+ E D + P+L D + N ++II D L+ D F + ++ ++++ANL Sbjct: 73 KQVLAFEIDDRLIPVLADTMQPYQN-VKIIHQDVLQADLATTIQSAFSDTAASLKVVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T ++ +++ + + + ++ QKEV +RI+A + YG LS+ + +A Sbjct: 132 PYYITTPIMMHFLESQVK---VDEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYYMEAK 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243 + F + VF P P V S ++ P + + K+T+ AF RRKTL +L+ Sbjct: 189 LAFIVPKTVFVPQPNVDSAILKLTRRSQPAVAVTDEKEFFKLTKAAFQLRRKTLWNNLQN 248 Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 G+ + L +GI+ R E LS+ +F +++N Sbjct: 249 SYGKDETTKQWLADSLEASGIDPKRRGETLSLAEFAKLSN 288 >gi|139473080|ref|YP_001127795.1| dimethyladenosine transferase [Streptococcus pyogenes str. Manfredo] gi|62900490|sp|Q5XDX4|RSMA_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221708|sp|A2RCH2|RSMA_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|134271326|emb|CAM29544.1| dimethyladenosine transferase [Streptococcus pyogenes str. Manfredo] Length = 290 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 245 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|322412722|gb|EFY03630.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 290 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMAAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ ++++ +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKNEDFFFRVSRLSFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 245 FGKSEDIKAKLEKGLALANIKPSIRGEALSIQDFGKLADALKE 287 >gi|52078537|ref|YP_077328.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580] gi|52783899|ref|YP_089728.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580] gi|319648566|ref|ZP_08002780.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2] gi|62900505|sp|Q65PH9|RSMA_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52001748|gb|AAU21690.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580] gi|52346401|gb|AAU39035.1| KsgA [Bacillus licheniformis ATCC 14580] gi|317389333|gb|EFV70146.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2] Length = 292 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ Y KK +GQNFL+D NIL +I + +G + VIEIG G G LT+ L A Sbjct: 12 KEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV E DQ+ PIL+D S + N + +I D LK D ++ F + ++ANLP Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDN-VTVIHQDVLKADVRAVMDEQFQDCDEVMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV +R+ A+ +S YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVADRMAAKPSSKEYGSLSIAVQFYTEAKT 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241 + ++ VF P P V S VI P ++ ++ + +F +RRKTL +L Sbjct: 187 VMNVPKTVFVPQPNVDSAVIRLTLRKEPAVAVQDAAFFFQVVKASFAQRRKTLFNNLVNN 246 Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + E L + I+ R E+LSIE+F +++ L + Sbjct: 247 LPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLRE 289 >gi|221135222|ref|ZP_03561525.1| dimethyladenosine transferase [Glaciecola sp. HTCC2999] Length = 267 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 141/262 (53%), Gaps = 16/262 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ +I + + ++EIG G G LT+ + + + V+E D+ Sbjct: 11 RKRFGQNFLNDDYVIDQIVSAIAPNNDDIMVEIGPGLGALTEPVCDV-VEHLNVVELDRD 69 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ +HP ++L +I+ DAL+ DF + P+++ NLPYNI T L+F+ Sbjct: 70 LAKRLR----EHPFMSSKLNVIEADALQFDFTELAK-QGPLKVFGNLPYNISTPLMFHLF 124 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T+ + + + QKEV R+ A+ +YGRLSV+ + + ++ P F P Sbjct: 125 ---TFTNQIKDMHFMLQKEVVNRLAARPGHKNYGRLSVMAQYYCTVVPVIEVPPEAFTPP 181 Query: 199 PKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ IPH P P L++L+K+T AF +RRKT+R SLK + ++L GI Sbjct: 182 PKVDSAVVRLIPHQTP-PVEVNELKALEKVTALAFNQRRKTIRNSLKSVIDADVLTSIGI 240 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + RAE LS+ F I N T Sbjct: 241 DPVWRAEGLSLAQFALIANHAT 262 >gi|289551708|ref|YP_003472612.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01] gi|315660340|ref|ZP_07913193.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590] gi|289181239|gb|ADC88484.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01] gi|315494629|gb|EFU82971.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590] Length = 296 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L+ + KK +GQNFL+D+NI+ KI ++S + VIEIG G G+LT+ L A Sbjct: 13 KELLTRFGFNFKKSLGQNFLVDVNIIHKIIDASDIDERTGVIEIGPGMGSLTEQLAK-KA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 ++VI E DQ+ P+L + + N + +I +D LK D + N I ++ANLP Sbjct: 72 KQVIAFEIDQRLIPVLDYTLAPYEN-VTVINEDILKADIAAAVHTYLNDCEKIMVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A + YG LS++T + T+ + Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNATVGTKAYGSLSIVTQYYTETSK 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ + + K+ + AF +RRKT+ + + Sbjct: 188 VVTVPKSVFMPPPNVDSIVVKLMQRSQPLVDIDDETAFFKLAKAAFAQRRKTINNNYQNH 247 Query: 245 GGENLLHQ---------AGIETNLRAENLSIEDFCRI 272 + H+ A I+ R E LSI+DF R+ Sbjct: 248 FKDGKKHKEAILSWLNAAEIDPKRRGETLSIQDFARL 284 >gi|269103551|ref|ZP_06156248.1| dimethyladenosine transferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163449|gb|EEZ41945.1| dimethyladenosine transferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 270 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 134/263 (50%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + L VIE D+ Sbjct: 12 RKRFGQNFLTDPFIIDGIVSAINPRSGQNLVEIGPGLGAITEEVGKL-VDHFNVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA++ DF K + +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLGPKLTINEGDAMRFDFTKLIREDAKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T+ + + + QKEV R+ A YGRL+V+ + K + ++ P F P+ Sbjct: 127 ---TYHKDVQDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYCKVMPVLEVPPESFVPA 183 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L + G+ Sbjct: 184 PKVDSAVVRLTPYETLPFPCTNLKWLDRVCREGFNQRRKTVRNCFKALMTAEQIEALGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 + R EN+S+E F + N L N Sbjct: 244 PSDRPENISVEKFVALANWLDAN 266 >gi|229823539|ref|ZP_04449608.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271] gi|229786983|gb|EEP23097.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271] Length = 296 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/274 (36%), Positives = 148/274 (54%), Gaps = 22/274 (8%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGAR 71 I+ + I KK +GQNFL++ +L+K+ E+ G +D TVIEIG G G LTQ L A+ Sbjct: 16 IMRRFDIQMKKSLGQNFLIEPRMLEKMIEA-GQVDADTTVIEIGPGIGALTQ-YLAHHAK 73 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPY 127 +V+ E DQ+F IL++ + N ++++ D L VDF + S + ++ANLPY Sbjct: 74 QVLAFEIDQRFVGILQETLADCDN-VQVVHQDILSVDFSSPEYAWLQDQSRLVVVANLPY 132 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ I ++ PF +SL ++ QKEV ER+TA + YG LSV ++ + Sbjct: 133 YITTPIIMRLIESNL--PF-QSLVMMMQKEVAERMTAAVGTKAYGSLSVAIQLEMESEIA 189 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245 F + +VF P P V S V+ P+ E+ + Q F +RRKTL +LK Sbjct: 190 FIVPKNVFIPKPNVDSAVLKLTRRPAPLVQVSDKEAFQAFVQAGFKQRRKTLWNNLKSAY 249 Query: 246 GENLL---------HQAGIETNLRAENLSIEDFC 270 +LL QAGIE N RAE+LS+ +F Sbjct: 250 VPDLLSEDSLRQVFDQAGIEPNRRAESLSLMEFA 283 >gi|92113048|ref|YP_572976.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM 3043] gi|119365016|sp|Q1QZ31|RSMA_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91796138|gb|ABE58277.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM 3043] Length = 282 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 +K GQNFL D ++ +I +IEIG G G LT+ LL +GA +VI +++D Sbjct: 22 RKRFGQNFLRDTGVIDRIVRVIAPRSDQRLIEIGPGQGALTEPLLDAVGALEVIELDRD- 80 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFN 136 P L+ +P+ I + DAL+ DF P+R+I NLPYNI T L+F+ Sbjct: 81 -LIPGLRVQFFNYPD-FVIHEGDALQFDFAALAAEGETPGKPLRVIGNLPYNISTPLIFH 138 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++A + + Q+EV ER+ A S +GRLSV+T + + +F + F Sbjct: 139 LLTARGA---IADMHFMLQREVVERLAATPGSAAWGRLSVMTQYHCRVDNLFVVPAEAFT 195 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ IPH P + I +EAFG+RRKTLR +LK + Sbjct: 196 PRPKVESAIVRLIPHDEPPHVAHDEALFGDIVREAFGQRRKTLRNNLKTRLDDTAWAALD 255 Query: 255 IETNLRAENLSIEDFCRITN 274 I+ R + LS+E+ RI N Sbjct: 256 IDPGRRPQTLSVEELVRIAN 275 >gi|27151614|sp|Q9RU68|RSMA_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 292 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 144/273 (52%), Gaps = 18/273 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+ G V+EIG G G LT+ + + G Sbjct: 28 VRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRG 87 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V +EKD++ P+L + + + +I DAL D+ + + R+IANLPY I Sbjct: 88 AR-VTALEKDERLRPVLAETLAGL--DVNVIWGDALDFDYAA---LPAGTRVIANLPYYI 141 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LL ++ A P S T+L QKEV +R+ AQ +YG LS + + D Sbjct: 142 TGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVKHVRD 197 Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--G 246 + FFP+P VTS+V+ P P + A RRKTLR +L+ +G G Sbjct: 198 VPKGAFFPAPDVTSSVVRLDFDRTRPQPD--PAFVSFVDNALRYRRKTLRNNLRMMGHSG 255 Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 E + L G+ ++RAE++ + + L Sbjct: 256 EAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 288 >gi|320547549|ref|ZP_08041834.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812] gi|320447624|gb|EFW88382.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812] Length = 290 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N +++I +D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++ + +F RRKTL +L Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREEPLVKVKDEDFFFRVAKISFVHRRKTLWNNLISH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF ++ + L + Sbjct: 245 FGKAEETKAKLEKALEIAEIKPSIRGEALSIADFAKLADALKE 287 >gi|228473773|ref|ZP_04058518.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC 33624] gi|228274794|gb|EEK13617.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC 33624] Length = 258 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 140/260 (53%), Gaps = 12/260 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL +L+I ++IA + + V+EIG G G LTQ LL +V VIE D Sbjct: 8 PKKHLGQHFLTNLSIAQQIANTLSEVGYDRVLEIGPGTGVLTQFLLGKNI-EVFVIEIDT 66 Query: 81 QFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + L+ QH ++L+ I+ +D LK D F+ P II N PYNI ++++F + Sbjct: 67 ESVTYLE----QHFSKLKGHILGEDFLKFDIVSHFS-KKPFAIIGNFPYNISSQIVFKLL 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + +FQKEV ERI + S YG LSVLT +F +S HVF P Sbjct: 122 EIRDFVP---EFSGMFQKEVAERICEKAGSKTYGILSVLTQAFYDTEYLFTVSEHVFNPP 178 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI N +PC + +I + AFG+RRKTLR SLK E ++ Sbjct: 179 PKVKSGVIRLKRKENYSLPCEEKLFFQIVKTAFGQRRKTLRNSLKSFLIEKESLKSDPLF 238 Query: 258 NLRAENLSIEDFCRITNILT 277 + R E LS+E+F + L Sbjct: 239 DKRPEMLSVEEFITLAQWLA 258 >gi|54295765|ref|YP_128180.1| dimethyladenosine transferase [Legionella pneumophila str. Lens] gi|62900486|sp|Q5WSM3|RSMA_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53755597|emb|CAH17099.1| hypothetical protein lpl2855 [Legionella pneumophila str. Lens] gi|307611813|emb|CBX01526.1| hypothetical protein LPW_32131 [Legionella pneumophila 130b] Length = 256 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 12/261 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 P+K GQNFL D I+ +I + L ++EIG G G LTQ LL L I I+ D Sbjct: 5 PRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLLQKLNRLTAIEIDTD 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 Q + +S +L +I DAL VDF +F +R++ NLPYNI T LL + Sbjct: 65 LQSYLTCLPVSQ---GKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYLLK 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 T + + + QKEV ERI A + YGRLSV+ + + +FD+ P F P P Sbjct: 119 FITC---IDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRP 175 Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S ++ PH ++P E L+ I +AF RRKTL +LK + + L+ GI+ Sbjct: 176 KVDSAIVRLTPHRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGIDG 235 Query: 258 NLRAENLSIEDFCRITNILTD 278 R E +S+ ++ ++ +++ Sbjct: 236 GKRPEQISVAEYVQLAKFISN 256 >gi|325917326|ref|ZP_08179544.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937] gi|325536460|gb|EGD08238.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937] Length = 262 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L + ++ L II D L VDF N +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTEAAAPI-GELSIIHRDVLSVDFTDVAN-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ + T +F + P Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVMINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 AG+ + RAE L + DF R+ N+ Sbjct: 235 EAAGVRPDARAEQLEVADFIRLANV 259 >gi|324517882|gb|ADY46945.1| Dimethyladenosine transferase 1 [Ascaris suum] Length = 362 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 148/283 (52%), Gaps = 30/283 (10%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ + YK+ K+ + QNFL+D+N+ +KI ++G +G V+EIG GPG +T+ +L Sbjct: 13 ALRDFIHMYKLNAKRILSQNFLMDMNLTRKIVRAAGIEEGDRVVEIGPGPGGITRAILEA 72 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPI 119 G ++ VIE D++F P L+ ++ +RL I DALK D + + +P Sbjct: 73 GCERLDVIEIDKRFIPPLQHLAEASGSRLHIHHADALKTDIGAIWQANATEGTSWDDAPP 132 Query: 120 R--IIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 R ++ NLP++I + L+ ++ W LTL FQ EV RI +S Sbjct: 133 RLHVVGNLPFHIASPLIIKYLREMHTRKSAWSYGRVPLTLTFQMEVARRICGPIDSEVRA 192 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFG 231 R+S+++ + ++ ++F+I F P PK+ V+ FIP + P I E ++KI + F Sbjct: 193 RISIMSTFVSEPKILFEIPGSCFVPKPKINVGVVRFIPRIEPLIKSAFEVVEKICRHIFH 252 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE--DFCRI 272 R+K + + ++ L E+L AE+LS E CRI Sbjct: 253 YRQKYVIKCVRTLYPESL-----------AESLSHELLSVCRI 284 >gi|319765025|ref|YP_004128962.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC] gi|330827220|ref|YP_004390523.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601] gi|317119586|gb|ADV02075.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC] gi|329312592|gb|AEB87007.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601] Length = 255 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 138/264 (52%), Gaps = 16/264 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ LG ++ VI Sbjct: 2 KHIPRKRFGQHFLSDPGIIDAIVRAIAPRPGQHMVEIGPGLAALTQPLVERLG--RLTVI 59 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSP-IRIIANLPYNIGTRLL 134 E D+ L+ QH +L++I+ D LKVDF + +++P IR++ NLPYNI T +L Sbjct: 60 ELDRDLAARLR----QH-GQLDVIESDVLKVDFTQVAQTLAAPKIRVVGNLPYNISTPIL 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ E + QKEV +R+ A + YGRLSV+ WR + + P Sbjct: 115 FHLMAHVQ---IIEDQHFMLQKEVIDRMVAAPATAAYGRLSVMLQWRYAMEDVLFVPPGS 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQA 253 F P P+V S V+ +PH P L ++ Q AF +RRK LR +L R L G + Sbjct: 172 FDPPPRVDSAVVRMLPHARPAAVDEALLSELVQVAFSQRRKLLRHTLGRWLEGHG--YAG 229 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 G +T RAE + + + + L Sbjct: 230 GFDTQRRAEEVPVAHYVALAQELA 253 >gi|241896677|ref|ZP_04783973.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC 33313] gi|241870158|gb|EER73909.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC 33313] Length = 298 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 147/282 (52%), Gaps = 21/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ + I KK +GQNFL D+NILK I + VIEIG G G LT+ L A Sbjct: 14 QAIMNSFGINTKKSLGQNFLTDINILKNIVAAGNVQPTDNVIEIGPGIGALTEQL-ARAA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANL 125 ++V+ E D + P+L+ + + N + ++ D L VD E+ F + +P++++ANL Sbjct: 73 KQVVAFEIDDRLIPVLEHTMAPYDN-VTVVNQDILTVDLEQAIKEHFTDPEAPLKLVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + +D + ++ ++ QKEV R++A+ + YG L++ +R AT Sbjct: 132 PYYITTPILMQVLQSDVK---FANIVVMMQKEVASRLSAEVGTKDYGALTLAVQYRMNAT 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + F +S F P+P V S +I P L +P + L + + F RRKTL +L Sbjct: 189 LAFTVSRTAFVPNPNVDSAIISLTPREPLKVLPHNEKQLFNLFKIGFTMRRKTLWNNLIT 248 Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G++ L ++ +RAE LS+E F + N L Sbjct: 249 AFGKDDAMKAKLTAALADIDLDPRIRAEKLSLEKFIDLHNAL 290 >gi|302332206|gb|ADL22399.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JKD6159] Length = 297 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 14 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 73 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI++ R E LSI+DF ++ Sbjct: 249 FKDGKQHKEVILQWLEQAGIDSRRRGETLSIQDFAKL 285 >gi|15605077|ref|NP_219862.1| dimethyladenosine transferase [Chlamydia trachomatis D/UW-3/CX] gi|76789080|ref|YP_328166.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13] gi|166154566|ref|YP_001654684.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu] gi|166155441|ref|YP_001653696.1| dimethyladenosine transferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335829|ref|ZP_07224073.1| dimethyladenosine transferase [Chlamydia trachomatis L2tet1] gi|27151560|sp|O84358|RSMA_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365015|sp|Q3KM04|RSMA_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729770|sp|B0B7S3|RSMA_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729771|sp|B0BBY8|RSMA_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|3328775|gb|AAC67949.1| Dimethyladenosine Transferase [Chlamydia trachomatis D/UW-3/CX] gi|76167610|gb|AAX50618.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13] gi|165930554|emb|CAP04049.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu] gi|165931429|emb|CAP07003.1| dimethyladenosine transferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|296435873|gb|ADH18047.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768] gi|296436799|gb|ADH18969.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222] gi|296437733|gb|ADH19894.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074] gi|297140232|gb|ADH96990.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301] gi|297748484|gb|ADI51030.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC] gi|297749364|gb|ADI52042.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC] Length = 277 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 141/265 (53%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK + QNFL+D NIL+KI ++ G V+EIG G G L+++LL+ GA VI +EKD Sbjct: 21 KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 P+ ++ SQ P +EI DA K + RI+ANLPY+I T LL + Sbjct: 78 --PMFEESLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P W+++T++ Q EV RITA+ YG L+V + F +SP+ F+P P Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191 Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253 V S V+H H +E +T+ AFG+RRK L SLK L ++ +L Q Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G R E + +E++ +I ++L D Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|311028973|ref|ZP_07707063.1| dimethyladenosine transferase [Bacillus sp. m3-13] Length = 296 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 143/282 (50%), Gaps = 22/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL+ I E + IEIG G G LT+ + A Sbjct: 12 KEILDKYGFSFKKSLGQNFLIDTNILRNIVEYGEVSEKTAAIEIGPGIGALTEQIAKR-A 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 KV E DQ+ PIL+D S + N + +I D LK D + +R+IANLP Sbjct: 71 GKVFAFEIDQRLLPILEDTLSPYDN-VTVIHKDILKADVTELIGEELKAYEEVRVIANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P +S+T++ QKEV ER+ A+ + YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLQ-EGLP--LKSITVMLQKEVAERMAAKPGTKEYGSLSIAVQYFTQAET 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI + P P ++ ++ + +FG+RRKT+ +L Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLVVREEP-PVRVKDEDFFFEVVRASFGQRRKTILNNLQS 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ G E L I+ R E LSIE+F +++ L Sbjct: 246 NLPDGKAKKQGIEAALATTSIDPKRRGETLSIEEFGALSDEL 287 >gi|325922418|ref|ZP_08184187.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865] gi|325547115|gb|EGD18200.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865] Length = 262 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 12/258 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + VIE D+ Sbjct: 10 KKSLGQHFLADRYYIDRIVQAVAPRAGQHLVEIGPGQGAITFPLLRKHGA--LTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L D ++ L II D L VDF N +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTDAAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V S V+ +P +P ++ ++ + + FG+RRKTLR +L + A + Sbjct: 183 VDSAVVRLVPR-DPATVLIKDRRRFADVVRAGFGQRRKTLRNALSEVCEPAHFEAAQVRP 241 Query: 258 NLRAENLSIEDFCRITNI 275 + RAE L + DF R+ N+ Sbjct: 242 DARAEQLEVADFIRLANV 259 >gi|121534378|ref|ZP_01666202.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1] gi|121307148|gb|EAX48066.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1] Length = 283 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 19/278 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + I K +GQNFL+D ++ I ++ G V+EIG G G LTQ L GA Sbjct: 15 ILKTFGIQMSKKLGQNFLVDEQVVDGIVAAAAVKPGEAVLEIGPGIGTLTQGLAEAGA-N 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V +E D+Q +L + + N + II D L++D + + ++IANLPY I T Sbjct: 74 VTAVELDRQLLDVLAKTLAGYDN-VRIIHGDILRIDISREIR-AEKFKVIANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + P E + + QKEV ER+ A S YG LSV + T+ +MF + P Sbjct: 132 IIMRLLE-ERLP--VELMVTMVQKEVAERMVAAPGSKDYGALSVAVQFYTQPEIMFVVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG--- 246 F P+P V S VI P P + K ++ + AF +RRKTL +LK GG Sbjct: 189 QAFIPAPAVESAVIRCRVRSAP-PVSVTDEKAFFRVVKAAFAQRRKTLANALK--GGGIA 245 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L Q GI+ R E L++ +F + N T Q Sbjct: 246 QEVVDAMLRQTGIDGGRRGETLTLAEFAALANAWTSRQ 283 >gi|323706303|ref|ZP_08117869.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534355|gb|EGB24140.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum LX-11] Length = 273 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/270 (34%), Positives = 142/270 (52%), Gaps = 22/270 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNF+ D IL KI + SG VIEIGAG G LT+ +L A V+ E D++ Sbjct: 10 KKRLGQNFIFDEGILSKIVDLSGITKNDNVIEIGAGLGTLTRKILE-KANMVVSYEIDKE 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137 + ILK N L ++ DD +KVD + +F +++ANLPY I + ++ Sbjct: 69 AYEILKADFKGRDN-LIVLNDDIMKVDLRETVDAYFG-GEKCKVVANLPYYITSPIIMKL 126 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + +T++ QKEV ERI A+ YG L+V + +K ++ ++ P VF P Sbjct: 127 LES----RLMKDITIMVQKEVAERICAKPGGKDYGVLTVAVNYYSKPEILLNLPPEVFSP 182 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----N 248 PKV+S++I H+ P +K I + +FG+RRK + SLK L + + Sbjct: 183 KPKVSSSLIKL--HVLDKPSVFVKDEKLFFRIVKSSFGQRRKVITNSLKSLSIDQSIIAD 240 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + GI+ R E LSIE F + N + D Sbjct: 241 ALTKCGIDLKQRGETLSIEKFAELANTIYD 270 >gi|15806536|ref|NP_295249.1| dimethyladenosine transferase [Deinococcus radiodurans R1] gi|6459288|gb|AAF11091.1|AE001996_6 dimethyladenosine transferase [Deinococcus radiodurans R1] Length = 336 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 26/277 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+ G V+EIG G G LT+ + + G Sbjct: 72 VRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRG 131 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR V +EKD++ P+L + + + +I DAL D+ + + R+IANLPY I Sbjct: 132 AR-VTALEKDERLRPVLAETLAGL--DVNVIWGDALDFDYAA---LPAGTRVIANLPYYI 185 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LL ++ A P S T+L QKEV +R+ AQ +YG LS + + D Sbjct: 186 TGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVKHVRD 241 Query: 190 ISPHVFFPSPKVTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + FFP+P VTS+V+ P +P + A RRKTLR +L+ + Sbjct: 242 VPKGAFFPAPDVTSSVVRLDFDRTRPQPDP------AFVSFVDNALRYRRKTLRNNLRMM 295 Query: 245 G--GENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 G GE + L G+ ++RAE++ + + L Sbjct: 296 GHSGEAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 332 >gi|29840068|ref|NP_829174.1| dimethyladenosine transferase [Chlamydophila caviae GPIC] gi|33301245|sp|Q823V2|RSMA_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29834416|gb|AAP05052.1| dimethyladenosine transferase [Chlamydophila caviae GPIC] Length = 278 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 145/278 (52%), Gaps = 17/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L L+ + PKK + QNFL+D NIL+KI S G V+EIG G G LT++L+ G Sbjct: 9 LTRFLAQVQGRPKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127 A V+ +EKD P+ ++ Q P LEI DA K + R++ANLPY Sbjct: 69 AH-VVALEKD----PMFEETLKQLPIDLEIT--DACKYPLSQLEEKGWQGKGRVVANLPY 121 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I T LL P W+++T++ Q EV RITAQ YG L++ + Sbjct: 122 HITTPLLTKLFLE--VPNQWKTVTVMMQDEVARRITAQPGGKEYGSLTIFLQFFADVRYA 179 Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLG 245 F +SP FFP P+V+S V+H + P+ L + +T+ AFG+RRK L +LK L Sbjct: 180 FKVSPGCFFPKPQVSSAVVHMTVKETFPLETSLHQKFFSLTRAAFGQRRKLLANALKDLY 239 Query: 246 GENL----LHQAGIETNLRAENLSIEDFCRITNILTDN 279 + L L+Q R E LS+ ++ ++ ++L+ N Sbjct: 240 PKELVFSALNQLNFSEKTRPETLSLNEYLQLFHLLSSN 277 >gi|199597856|ref|ZP_03211282.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus rhamnosus HN001] gi|258509566|ref|YP_003172317.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG] gi|199591292|gb|EDY99372.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus rhamnosus HN001] gi|257149493|emb|CAR88466.1| Dimethyladenosine transferase [Lactobacillus rhamnosus GG] gi|259650833|dbj|BAI42995.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG] Length = 294 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 139/278 (50%), Gaps = 18/278 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ + VIEIG G G LTQ L A Sbjct: 13 AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLAD-QAH 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN ++ +D LK + + F+ + ++++ANLPY Sbjct: 72 QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A P S+T++ QKEV R++A S YG LS+ Sbjct: 131 YITTPILLHLLRAH-LP--LHSMTVMMQKEVAARLSAVPGSKDYGSLSIAVQLVADVATA 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ ES ++ + AF RRKTL +L L Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRSEPLATVQSPESFDRLVRGAFASRRKTLWNNLVALF 247 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L A I RAE L+I DF R+ L Sbjct: 248 GKPNKDAIRTALSVAEIAPETRAEQLAIADFARLDEAL 285 >gi|167748007|ref|ZP_02420134.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662] gi|167652584|gb|EDR96713.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662] Length = 286 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D ++L+KI +++ + V+EIG G G +TQ L+ AR+ Sbjct: 13 IIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITEDDFVLEIGPGIGTMTQ-YLSEHARE 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 V+ +E D PILK+ + + N +E++ +D LKVD K N PI+++ANLPY I Sbjct: 72 VMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGRPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + SLT++ QKEV +R+ A + YG LS+ + + ++ + Sbjct: 131 TTPIIMGLFEKNVP---MNSLTVMVQKEVAQRMQAGPGTKDYGALSLAVQFYAEPYIVAN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLK----- 242 + P+ F P PKV S VI + + P+ E L I + +F +RRKTL+ + Sbjct: 188 VPPNCFMPRPKVGSAVIRLTRYKDMPVKVKNEQLMFSIIRASFNQRRKTLQNGINNSSTL 247 Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 E + L + G+ +R E LS+E F R++++L Sbjct: 248 HFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLL 284 >gi|18311499|ref|NP_563433.1| dimethyladenosine transferase [Clostridium perfringens str. 13] gi|110799025|ref|YP_697204.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124] gi|110801894|ref|YP_699773.1| dimethyladenosine transferase [Clostridium perfringens SM101] gi|168213441|ref|ZP_02639066.1| dimethyladenosine transferase [Clostridium perfringens CPE str. F4969] gi|169343266|ref|ZP_02864277.1| dimethyladenosine transferase [Clostridium perfringens C str. JGS1495] gi|182624345|ref|ZP_02952130.1| dimethyladenosine transferase [Clostridium perfringens D str. JGS1721] gi|27151580|sp|Q8XHG8|RSMA_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600857|sp|Q0TMD6|RSMA_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600859|sp|Q0SQ34|RSMA_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|18146183|dbj|BAB82223.1| dimethyladenosine transferase [Clostridium perfringens str. 13] gi|110673672|gb|ABG82659.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124] gi|110682395|gb|ABG85765.1| dimethyladenosine transferase [Clostridium perfringens SM101] gi|169298564|gb|EDS80645.1| dimethyladenosine transferase [Clostridium perfringens C str. JGS1495] gi|170715038|gb|EDT27220.1| dimethyladenosine transferase [Clostridium perfringens CPE str. F4969] gi|177910563|gb|EDT72936.1| dimethyladenosine transferase [Clostridium perfringens D str. JGS1721] Length = 285 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 14/279 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K K ++ Y K +GQNFL+D ++ + I + + VIEIG G G LT L Sbjct: 7 KDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A++V+ IE D PIL +P + ++I +DALKVDF + ++++ANL Sbjct: 67 LK-RAKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGDEKSVKLVANL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ N + ++SLT++ QKEV ER+ A+ N YG LS+L + Sbjct: 125 PYYVTTPIIVNLLKGGYN---FKSLTIMIQKEVAERMNAEPNCKDYGALSILVQYYCNTK 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242 ++ + P F P PKV S VI + L +++ K +I + AF RRKTL + K Sbjct: 182 IVRKVPPSCFIPRPKVDSIVIR-LERLEEPSVKVKNEKLFFEIVRHAFNMRRKTLWNATK 240 Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + E +AGI+ R E LS+ +F +++ + Sbjct: 241 NVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279 >gi|227894433|ref|ZP_04012238.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047] gi|227863803|gb|EEJ71224.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047] Length = 294 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 150/287 (52%), Gaps = 24/287 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL GA Sbjct: 14 RAIINRYFVKAKKNLGQNFLVDQNAILGIVEAANIQSGDQVIEIGPGIGSLTEQLLLAGA 73 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV E D IL K I + R ++ D LK +FEK FF++ PI+ Sbjct: 74 -KVFAYEVDDSLPEILHNELPKKIDGEPLEARFKLTLKDVLKANFEKDLTGFFDMGKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 133 VVANLPYYITTPIIFVLAESDLH---FTSLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237 + ++ F P P+V S+V+ P L P +E+ K + + F +RRKTL Sbjct: 190 EMNVRLALEVKNTSFMPRPRVDSSVVVLTP-LKDKP-AIENRKHFIWVVKMCFSQRRKTL 247 Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +LK L + +L+ + ++ +R E+LSIE F I + N Sbjct: 248 NNNLKTLIPDTDQRADLIKKLDVDPRIRPEDLSIEQFIEIARNIPSN 294 >gi|330878396|gb|EGH12545.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 268 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ V+E D+ Sbjct: 10 RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLGSGA-QLDVVELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PIL + PN + Q DALK DF +R++ NLPYNI T L+F+ + Sbjct: 69 LIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV ER+ A +GRLS++ + + +F++ P F P PKV Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184 Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S ++ +P+ P P L+++ +EAF +RRKTLR +L+ L + + +G++ +L Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLRLLLSSDEITASGVDGSL 244 Query: 260 RAENLSIEDFCRITNILTD 278 R E L + F R+ + L++ Sbjct: 245 RPEQLDLAAFVRLADTLSE 263 >gi|82750200|ref|YP_415941.1| dimethyladenosine transferase [Staphylococcus aureus RF122] gi|82655731|emb|CAI80130.1| dimethyladenosine transferase [Staphylococcus aureus RF122] Length = 303 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 145/278 (52%), Gaps = 20/278 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 19 MRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARH 77 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANL 125 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANL Sbjct: 78 AKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANL 136 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 137 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETS 193 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 194 KVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQN 253 Query: 244 LGGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 254 YFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 291 >gi|229542292|ref|ZP_04431352.1| dimethyladenosine transferase [Bacillus coagulans 36D1] gi|229326712|gb|EEN92387.1| dimethyladenosine transferase [Bacillus coagulans 36D1] Length = 295 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 151/281 (53%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ Y KK +GQNFL+D NIL+ I +++ + V+EIG G G LT+ L + Sbjct: 12 KAILNRYGFSFKKSLGQNFLIDPNILRNITDTADLTEESGVVEIGPGIGALTEH-LARRS 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126 +KV+ E D++ PILKD + +PN + +I +D LK D K + I ++ANLP Sbjct: 71 KKVVAFEIDKRLAPILKDTLAPYPN-VNVIYEDVLKADVGKVLETEFAGINDIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ +++ +P + ++ QKEV +RI+A + +YG LS+ + A + Sbjct: 130 YYVTTPIILKFVTG-LYP--IRGMVVMLQKEVADRISAVPGTKNYGTLSIAIQYYMTAEV 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKR- 243 + VF P P V S V+ + P + E+ ++ + +F +RRKTL +L Sbjct: 187 AMIVPKTVFMPQPNVDSAVVKLVKRDKPKVEVKDEAFFFQVAKASFAQRRKTLINNLTAG 246 Query: 244 -LGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276 GG++ +L Q IE + R E LS+E+F ++N L Sbjct: 247 LPGGKDKKETLLSVLEQLKIEPSRRGETLSLEEFAALSNAL 287 >gi|325288376|ref|YP_004264557.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM 8271] gi|324963777|gb|ADY54556.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM 8271] Length = 297 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 157/302 (51%), Gaps = 33/302 (10%) Query: 3 MNNKSHSLK---TILSHYKII------PKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53 MNN S LK T+L + K + +K +GQNFL+ +++ I + G V+E Sbjct: 1 MNNSSKDLKRKETLLQYTKRVLRGGKTIRKSLGQNFLVSAEVVESIVAAIGENHFWPVVE 60 Query: 54 IGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 IG+GPG LT+ L A KV +E DQ+ IL++ P +++I+Q DALK++ E Sbjct: 61 IGSGPGGLTRAL----AEKVDQLWAVELDQENVEILRE--EMPPEKVKILQADALKLNLE 114 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 + + ++ NLPY I LL +++ + + ++ QKEV ER+TA+ Sbjct: 115 ELWGKQKGW-LVGNLPYYITNPLLMHFLEQSS---NLFGMIVMVQKEVAERMTAKPGGKE 170 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQ 227 YG LS+ A ++F++ P F P PKVTS V+ + P P C + +I + Sbjct: 171 YGILSIAVQLAADARILFEVPPTSFHPQPKVTSAVVRL--DIRPFPDFDCERDEFFRIVK 228 Query: 228 EAFGKRRKTLRQSLK---RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AF +RRKTL +L + E + L +AG+E RAE LSI DF +T +T + Sbjct: 229 AAFAQRRKTLANALSAGLHISKEEVITALGKAGLEGKRRAETLSIADFQEVTRQMTGRKQ 288 Query: 282 IA 283 ++ Sbjct: 289 VS 290 >gi|163791033|ref|ZP_02185454.1| dimethyladenosine transferase [Carnobacterium sp. AT7] gi|159873678|gb|EDP67761.1| dimethyladenosine transferase [Carnobacterium sp. AT7] Length = 297 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ Y KK +GQNF++D NIL I +S VIE+G G G LT+ L + Sbjct: 14 KEIMEKYGFSVKKSLGQNFIVDPNILSNIVAASDIDKNTNVIEVGPGIGALTEHL-ARAS 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 ++VI E D + P+L D S + N + ++ D LKV+ ++ ++ P+ ++ANLP Sbjct: 73 KEVIAFEIDNRLLPVLADTLSPYDN-ISVVHSDVLKVNLQESLPEMIDLDEPLVVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ P + LT++ QKEV ERITA S YG LS+ + +A + Sbjct: 132 YYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGSLSIAIQYYMEAEV 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLK-R 243 F + VF P P V S +I P +S + + AF +RRKTL +L R Sbjct: 189 AFIVPKTVFIPQPNVDSAIIKLTRRATPSVTVNNEKSFFALVRSAFVQRRKTLWNNLLIR 248 Query: 244 LGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E+ L A I+ R E LS+ +F +++ + + Sbjct: 249 YGKEDETREKLIQALEAANIDPKRRGETLSLAEFALLSDAIDE 291 >gi|311070689|ref|YP_003975612.1| dimethyladenosine transferase [Bacillus atrophaeus 1942] gi|310871206|gb|ADP34681.1| dimethyladenosine transferase [Bacillus atrophaeus 1942] Length = 292 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + +G + VIEIG G G LT+ L A Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 ++V+ E DQ+ PILKD S + N + +I D LK D E+ F+ I ++ANLP Sbjct: 71 KQVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVRTVIEEQFHDCDEIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241 + + VF P P V S VI + P + ++ + +F +RRKTL +L Sbjct: 187 VMTVPKTVFVPQPNVDSAVIRLLLREGPAVDVVNEAFFFQLIKASFAQRRKTLLNNLVNN 246 Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 K+ E +L + I+ R E LSI++F ++N Sbjct: 247 LPQGKEKKSIIEEVLKETQIDGKRRGEALSIDEFAALSN 285 >gi|260818308|ref|XP_002604325.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae] gi|229289651|gb|EEN60336.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae] Length = 1177 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 120/216 (55%), Gaps = 14/216 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ Y++ K + QNFL D N+ KI +S+G+L+G V E+G GPG +T+ +L Sbjct: 25 TIRDIVKLYRLNAAKQLSQNFLFDTNLTDKIVKSAGNLEGAYVCEVGPGPGGITRSILKA 84 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSP-------I 119 GA KV+V+E D++F L+ +S+ P R+EI+ D L + K +++ P + Sbjct: 85 GAAKVVVVELDKRFNAGLRLLSAAAPGRVEIVNADILTYNLAKALPLDLAVPWEGDPPNV 144 Query: 120 RIIANLPYNIGTRLLFNWISA---DTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+N+ T L+ W+ A T P + LTL FQKEV ERI A S RL Sbjct: 145 HIIGNLPFNVSTPLIIRWLEALALRTGPFVYGRTQLTLTFQKEVCERICAPPRSSQRSRL 204 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 S+++ + + F I F P P V V+HF P Sbjct: 205 SIMSQYLCRVKHCFRIPGKCFVPKPDVDVGVVHFTP 240 >gi|16077110|ref|NP_387923.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. 168] gi|221307851|ref|ZP_03589698.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. 168] gi|221312173|ref|ZP_03593978.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317106|ref|ZP_03598400.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321369|ref|ZP_03602663.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. SMY] gi|585375|sp|P37468|RSMA_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|467431|dbj|BAA05277.1| high level kasgamycin resistance [Bacillus subtilis] gi|2632309|emb|CAB11818.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis subsp. subtilis str. 168] gi|291482413|dbj|BAI83488.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto BEST195] Length = 292 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 144/279 (51%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + + + VIEIG G G LT+ L A Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV+ E DQ+ PILKD S + N + +I D LK D E+ F I ++ANLP Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYEN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTL------- 237 + + VF P P V S VI I P + ES ++ + +F +RRKTL Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLILRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVNN 246 Query: 238 --RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 ++ E +L + I+ R E+LSIE+F ++N Sbjct: 247 LPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSN 285 >gi|306832261|ref|ZP_07465415.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425700|gb|EFM28818.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 290 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N +++I +D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI +F ++ + L + Sbjct: 245 FGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|288906214|ref|YP_003431436.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34] gi|325979187|ref|YP_004288903.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732940|emb|CBI14519.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34] gi|325179115|emb|CBZ49159.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 290 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N +++I +D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLHDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ +F RRKTL +L Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI +F ++ + L + Sbjct: 245 FGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|90961211|ref|YP_535127.1| dimethyladenosine transferase [Lactobacillus salivarius UCC118] gi|119365028|sp|Q1WV73|RSMA_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|90820405|gb|ABD99044.1| Dimethyladenosine transferase [Lactobacillus salivarius UCC118] gi|300214137|gb|ADJ78553.1| Ribosomal RNA small subunit methyltransferase A (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S ribosomal RNA dimethyladenosine transferase) (16S ribosomal RNA dimethylase) [Lactobacillus salivarius CECT 5713] Length = 296 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 148/282 (52%), Gaps = 20/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ Y + KK +GQNFL D+NILK I ++ + VIEIG G G LT+ L A Sbjct: 15 RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAK-RA 73 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 KV+ +E D + P+L D S + N +E++ D LK D + F ++++ANLP Sbjct: 74 NKVMALEIDDRLLPVLADTLSPYEN-VEVVHQDILKADLKALIAEHFEPGHKLKLVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + + + +E++ ++ QKEV ER+ A + YG LSV + + + Sbjct: 133 YYITTPILMHLLDSGIE---FETIVVMMQKEVAERLAANPGTKAYGSLSVAVQYEMDSEI 189 Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S +I + P P + KK+ + +F RRK+L +L+ L Sbjct: 190 AFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKSLWNNLQSL 249 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277 G++ L A I+ ++RAE L++ DF +++ L Sbjct: 250 YGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALV 291 >gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 1/124 (0%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 LDLN +IA ++G LDG TVIEIG GPG LT+ LLT GARKVI IE+DQ+ L++I+ Sbjct: 1 LDLNFTGRIARAAGPLDGATVIEIGPGPGGLTRALLTEGARKVIAIERDQRAIAALEEIA 60 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 HP RL I+ DAL+ D + S P+RI+ANLPYNI T L +W++A+ WPP+++ L Sbjct: 61 EHHPGRLTIVAGDALEFDPKPLLE-SGPVRIVANLPYNIATALPVSWLTAEPWPPWYDRL 119 Query: 151 TLLF 154 L+ Sbjct: 120 VLML 123 >gi|21230265|ref|NP_636182.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769742|ref|YP_244504.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. 8004] gi|27151570|sp|Q8PCE3|RSMA_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|81304304|sp|Q4UR39|RSMA_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21111810|gb|AAM40106.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575074|gb|AAY50484.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. 8004] Length = 262 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 137/265 (51%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLLRKHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L D ++ +L+II D L VDF + +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ + T +F + P Sbjct: 119 LFHALDHAGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P + ++ K+ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 AG+ + RAE L + DF R+ N+ Sbjct: 235 EAAGVRPDARAEQLEVADFIRLANV 259 >gi|227509274|ref|ZP_03939323.1| dimethyladenosine transferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512287|ref|ZP_03942336.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577] gi|227084462|gb|EEI19774.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577] gi|227191272|gb|EEI71339.1| dimethyladenosine transferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 301 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y++ KK +GQNFL+DLNIL I E++ VIEIG G G LT+ L A Sbjct: 19 QAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAK-AA 77 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D++ P+L + S + N +EII D LK + K F P++++ANLP Sbjct: 78 NQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKVVANLP 136 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ + ++ P +ES+ ++ QKEV ER+ A+ + YG LSV+ + + Sbjct: 137 YYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQNDVDI 193 Query: 187 MFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + F P PKV S ++ P ++ P + + F +RKTL +L + Sbjct: 194 SFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWNNLLGV 253 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274 G+ +L I R E L +E F +TN Sbjct: 254 FGKQESVKGQIKKVLDDLSINAANRPEQLQVEQFVALTN 292 >gi|319940876|ref|ZP_08015215.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B] gi|319805758|gb|EFW02539.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B] Length = 265 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 135/251 (53%), Gaps = 9/251 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D + +++IA S G +IEIG G LT+ +++L + V E D+ Sbjct: 12 RKRFGQNFLHDRHWIERIARSIDPKPGDELIEIGPGQAALTREVVSLAGHETAV-EIDRD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + P L +I+ DAL +D++ +R++ NLPYNI + LLF + A Sbjct: 71 LAAFLR--TQFTPEELTLIEADALTLDWKTVLP-GKRLRVLGNLPYNISSPLLFALLPAA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + QKEV +R+TA S YGRLSV+ +R +FD+ P F P+PKV Sbjct: 128 GR---IIDQHFMLQKEVVDRMTAVPGSKTYGRLSVMLQYRYVMHKLFDVPPGAFVPAPKV 184 Query: 202 TSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 TS+++ +P + +P + +I AF +RRK LR SL E+ + AG+E Sbjct: 185 TSSIVRMVPKPVENLPAVDMSVFSEIVAAAFQQRRKMLRGSLSAFLDESSIISAGVEPTA 244 Query: 260 RAENLSIEDFC 270 RAE LS++DF Sbjct: 245 RAETLSVDDFV 255 >gi|259048129|ref|ZP_05738530.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175] gi|259035190|gb|EEW36445.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175] Length = 289 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 152/281 (54%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ + + KK +GQNFL++ NIL ++ E +G VIEIG G G LT+ L A Sbjct: 14 REIMERHGLTVKKSLGQNFLIEPNILTRMLEVAGVDKTTNVIEIGPGIGALTERL-AREA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 ++V+ E D + P+L + + + N + ++ D L VD E+ F+I+ P+ ++ANLP Sbjct: 73 KQVLAFEIDGRLLPVLDETLAPYDN-VTVVHSDILDVDLEQVIGEHFDINEPLLVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ N + + P + ++ QKEV +R+TA+ NS YG L++ + +A++ Sbjct: 132 YYITTPIIMNLLESK-LP--IDGFAMMMQKEVAQRMTAEPNSKAYGSLTIAIQYFCEASI 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + K + + +F +RRKTL +L + Sbjct: 189 GFIVPKTVFNPAPNVDSAILVLKRREKPLVEVKDEAKFFALVKNSFVQRRKTLWNNLAKA 248 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 N L AGI+ RAE L+IE+F R+++ L Sbjct: 249 YVGNSHTKESLAAALEVAGIDPTRRAETLTIEEFARLSDAL 289 >gi|194364446|ref|YP_002027056.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3] gi|194347250|gb|ACF50373.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3] Length = 267 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 134/256 (52%), Gaps = 10/256 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL D + + KI + DG ++EIG G G +T LL + K+ VIE D+ Sbjct: 17 KKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +++ L I+ D L+VDF + + PIR++ NLPYNI + +LF+ + Sbjct: 76 LIAPLT-AAAEPLGELTIVHRDVLRVDFTELAD-GQPIRLVGNLPYNISSPILFHALEHA 133 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV +R+ A S +GRLSV+ + T +F + P F P PKV Sbjct: 134 A---VIRDMHFMLQKEVVDRMAAGPGSKVFGRLSVMLQAYCEVTSLFVVPPGAFRPPPKV 190 Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S V+ +P +P + K+ + + AFG+RRKTLR +L + AG+ + Sbjct: 191 DSAVVRLVPR-DPATINIRDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFAAAGVRPD 249 Query: 259 LRAENLSIEDFCRITN 274 RAE L + +F + N Sbjct: 250 ARAEQLDVAEFIALAN 265 >gi|307701523|ref|ZP_07638541.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16] gi|307613315|gb|EFN92566.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16] Length = 303 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 143/299 (47%), Gaps = 28/299 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ + I P K GQNF+ D +++IA + V+EIG G G+ Sbjct: 1 MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVDFEKFFNISS 117 LT LL GAR VI +E D + L H +E + DAL +D + Sbjct: 61 LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+ ++ANLPYN+ T +L + + P ++ Q EV +R+ A+ YG Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF---IPHLNPI-----PCCLESLKKI 225 SV W A F +S VF P P V STV+ F P L P +E+L++ Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236 Query: 226 TQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 + E AFG RRKTLRQSL RL G LL +AGI+ LRAENL + DF + + Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295 >gi|62258206|gb|AAX77774.1| unknown protein [synthetic construct] Length = 297 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 140/271 (51%), Gaps = 9/271 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL+ + V V Sbjct: 28 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 86 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 87 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 145 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS GRLSV+ + +M+ I P V Sbjct: 146 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 202 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 203 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 262 Query: 254 G--IETNLRAENLSIEDFCRITNILTDNQDI 282 ++TNLRAENLS+ DF + N L+ D+ Sbjct: 263 TLPVDTNLRAENLSVGDFVSLANFLSYPYDV 293 >gi|321476312|gb|EFX87273.1| hypothetical protein DAPPUDRAFT_307097 [Daphnia pulex] Length = 332 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 23/287 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ +L+ Y++ K + QNFL+D + K+ ++G + V E+G G G+LT+++L+ Sbjct: 15 AVRDLLNLYRLQAVKQLSQNFLIDPKLTSKLVSAAGKITNGYVCEVGPGAGSLTRVILSR 74 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---------I 119 K++V+EKD++F P L+ ++ +R+ I+ D L + F S I Sbjct: 75 NVNKLVVVEKDKRFQPPLEMLAEASGDRMSIVWGDVLSHNLTNAFPEESKRDWTDQPPNI 134 Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+NI T L+ W+ A + W +TL FQKEV ER+ A+ S RL Sbjct: 135 HIIGNLPFNIATPLIIRWLKAISERSNAWVHGRVPMTLTFQKEVAERMVAKIGSRERCRL 194 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ F I F P P V V+HF P P I + ++K+ + F R Sbjct: 195 SVMVQHLCYVEHKFTIPGKAFVPKPNVDVGVVHFTPLATPKIQAPFKLVEKVARNTFSFR 254 Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272 +K R+ L+ L LL A ++ LR LSIE+F RI Sbjct: 255 QKYCRRGLETLFPSSMRDEQTHKLLQLADVDGTLRPFELSIEEFNRI 301 >gi|206900710|ref|YP_002251201.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12] gi|206739813|gb|ACI18871.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12] Length = 279 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 153/279 (54%), Gaps = 15/279 (5%) Query: 3 MNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 MN S S L IL I KK +GQNFL+D NILKKI ++ T++E+G G G L Sbjct: 1 MNLTSRSELIEILQKNNIFLKKSLGQNFLVDKNILKKIIDALEISKEDTILEVGCGVGTL 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 T + L +++VI +E D++F PIL+++ +PN EII +D +K+D K ++ P ++ Sbjct: 61 T-LELAKRSKRVIGVEIDKRFKPILENLLKDYPNT-EIIFEDIMKIDLSKI--VTPPYKL 116 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPY I L + P+ + ++ QKE+ ER+T+ + Y LS+L Sbjct: 117 AGNLPYYISGSFLGEYFQKG---PYASLMVIMLQKEMAERLTSSPGNKKYSPLSILLHIT 173 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 ++ + P FFP+P+V S ++ P L+ I E K+ +E+F +RRK L Sbjct: 174 YSYEVISKVPPSCFFPAPEVESVILRLKLNPKLDKIHNK-ELFFKLLKESFSQRRKFLLN 232 Query: 240 SLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITN 274 +L+R E L + I++ +RAE+LS ED+ ++N Sbjct: 233 NLQRAFPEIDWKTLFTELNIDSKIRAEDLSPEDYITLSN 271 >gi|227876332|ref|ZP_03994445.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243] gi|269976092|ref|ZP_06183091.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1] gi|227843105|gb|EEJ53301.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243] gi|269935685|gb|EEZ92220.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1] Length = 303 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 143/299 (47%), Gaps = 28/299 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ + I P K GQNF+ D +++IA + V+EIG G G+ Sbjct: 1 MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVDFEKFFNISS 117 LT LL GAR VI +E D + L H +E + DAL +D + Sbjct: 61 LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+ ++ANLPYN+ T +L + + P ++ Q EV +R+ A+ YG Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF---IPHLNPI-----PCCLESLKKI 225 SV W A F +S VF P P V STV+ F P L P +E+L++ Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236 Query: 226 TQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 + E AFG RRKTLRQSL RL G LL +AGI+ LRAENL + DF + + Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295 >gi|226192683|pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 gi|226192684|pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 23/276 (8%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S++ +L + + K GQNFL+ L++I E++ G V E+G G G LT+ LL Sbjct: 8 QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLE 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GA +V IEKD + P+L++ S P RL + DAL +E+ S ++ANLPY Sbjct: 67 AGA-EVTAIEKDLRLRPVLEETLSGLPVRL--VFQDALLYPWEEVPQGSL---LVANLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I T L+ + + L L QKEV ER TA+ +P YG L++ A + Sbjct: 121 HIATPLVTRLLKTGRF----ARLVFLVQKEVAERXTARPKTPAYGVLTLRVAHHAVAERL 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLG 245 FD+ P FFP PKV S+++ P L+ L ++ + AFGKRRKTL +L G Sbjct: 177 FDLPPGAFFPPPKVWSSLVRLTPT-----GALDDPGLFRLVEAAFGKRRKTLLNALAAAG 231 Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L G+ +RAE L +E F R+ L Sbjct: 232 YPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267 >gi|27262374|gb|AAN87468.1| Dimethyladenosine transferase [Heliobacillus mobilis] Length = 283 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 149/285 (52%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S L+ ++ Y I KK +GQNFL D + +I +++ G V+EIG GP LT L Sbjct: 2 SKELRQRIAQYGIRAKKGLGQNFLSDSEYVYRIVDAAELSSGDVVVEIGPGPATLTPHLA 61 Query: 67 -TLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRI 121 +G KV+ IE D+ P+L D+ ++P +EI+ DALKVD++ + P + Sbjct: 62 EAVGPEGKVLAIEVDESLRPLLMDLCREYPQ-VEILWQDALKVDYDAVTAPYRGDKPFTL 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + + ++ QKEV +R+ A+ + YG LSV + Sbjct: 121 VANLPYYITTPIMMGLLEGRFN---LSHMVIMVQKEVADRMLARAGTKDYGALSVAVQYH 177 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLR 238 + ++ + P F P PKV+S V+ P P + ++ ++ + AF +RRKTL Sbjct: 178 CEVKLVTKVPPGAFIPPPKVSSAVVRLNRRRQP-PVHVFDEKAFFRVVRAAFNQRRKTLL 236 Query: 239 QSLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L LG E L QAGI+ R E L++++F R+T+ L Sbjct: 237 NALGGLGLEMTKTEMSERLAQAGIDPGRRGETLNLDEFARVTDAL 281 >gi|308171933|ref|YP_003918638.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus amyloliquefaciens DSM 7] gi|307604797|emb|CBI41168.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus amyloliquefaciens DSM 7] gi|328551743|gb|AEB22235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus amyloliquefaciens TA208] gi|328910003|gb|AEB61599.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus amyloliquefaciens LL3] Length = 293 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 150/293 (51%), Gaps = 24/293 (8%) Query: 3 MNNKSHSL----KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MNNK + K IL Y KK +GQNFL+D NIL +I + + D VIEIG G Sbjct: 1 MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114 G LT+ L A+KV+ E DQ+ PIL D S + N + II D LK D E+ F Sbjct: 61 GALTEQLAK-RAKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHHDVLKADVKSVIEEQFQ 118 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I + ANLPY + T ++ + + P + + ++ QKEV ER+ A +S YG L Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGK 232 S+ + T+A + + VF P P V S VI + P + ES ++ + +F + Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNESFFFQLIKASFAQ 235 Query: 233 RRKTLRQSLKRL--GG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKTL +L GG E +L + I+ R E+LSIE+F ++N L Sbjct: 236 RRKTLLNNLVNNLPGGKEKKPQIEEVLQETNIDGKRRGESLSIEEFALLSNGL 288 >gi|317132589|ref|YP_004091903.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3] gi|315470568|gb|ADU27172.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3] Length = 284 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 146/290 (50%), Gaps = 17/290 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT +K +L+ + K +GQNFL++ ++ ++A G+ + V+EIG G G Sbjct: 1 MTDLANPAQIKALLARHGFHFSKALGQNFLINPSVCPRMAALCGAEEAAGVLEIGPGIGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP 118 LT L A+KV+ +E D + P+L + Q N + ++Q DA++ D P Sbjct: 61 LTAEL-ARRAKKVVALELDTRLLPVLAETLDQFSN-VRVVQGDAMEADLAALIREEFGGP 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 + + ANLPY I + LL + ++ P ++T++ QKE RI A S G +S+ Sbjct: 119 VAVCANLPYYITSPLLMRLL--ESHLPVT-AVTVMVQKEAAARICAAPGSRDTGAVSLAV 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRK 235 + ++FD+S F P P+V S VI H P P + + L ++ + AF +RRK Sbjct: 176 RYYASPRVLFDVSAGSFLPRPQVDSCVIRLDLHQEP-PVAVRNEALLFRVVRAAFAQRRK 234 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 LR +L G L +AG++ +LR E L++ DF R+ + L + Sbjct: 235 MLRSALPAGLGLPRERVAAALRKAGVDESLRGERLTLADFARVADALAEE 284 >gi|253576891|ref|ZP_04854216.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843758|gb|EES71781.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 298 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 144/280 (51%), Gaps = 19/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ + KK +GQNFL+D NIL KI ++ +EIG G G LT+ L A Sbjct: 14 KEIIQRHGFSFKKSLGQNFLIDQNILGKIVAAAELEKTQGALEIGPGIGALTEKLAQ-EA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126 KV +E DQ+ PIL+++ +P+ + +I D LK+D + F S + ++ANLP Sbjct: 73 GKVAAVEIDQRLLPILQEVLEPYPH-VHVIHGDVLKLDLKALFAAEFSGVSGVSVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV ER+ A YG LS+ + + M Sbjct: 132 YYVTTPIMMKLLE-EKLP--LKHIVVMIQKEVAERMAATPGGKDYGSLSIAVQYYSTPEM 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK-- 242 + + VF P P V S VI P + ++ Q +F +RRKT+ +LK Sbjct: 189 ICTVPHSVFIPQPNVESAVIRLTVREKPAVAVQDEAFFFEVVQASFAQRRKTISNNLKSR 248 Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 R E LL +AGI+ + RAE LS+++F ++++ L Sbjct: 249 FFPKEGRERLEQLLEEAGIQPSRRAETLSLDEFAKLSDTL 288 >gi|118600900|sp|Q2YVV2|RSMA_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 297 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 145/278 (52%), Gaps = 20/278 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 13 MRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARH 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANL 125 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANL Sbjct: 72 AKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 131 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETS 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 188 KVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQN 247 Query: 244 LGGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 248 YFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285 >gi|27364120|ref|NP_759648.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio vulnificus CMCP6] gi|37678662|ref|NP_933271.1| dimethyladenosine transferase [Vibrio vulnificus YJ016] gi|320157505|ref|YP_004189884.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O] gi|31340188|sp|Q8DED2|RSMA_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900560|sp|Q7MP86|RSMA_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27360238|gb|AAO09175.1| dimethyladenosine transferase [Vibrio vulnificus CMCP6] gi|37197402|dbj|BAC93242.1| dimethyladenosine transferase [Vibrio vulnificus YJ016] gi|319932817|gb|ADV87681.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O] Length = 268 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 137/264 (51%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLR----THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L+ L+++ +E F +RRKT+R K L E +L + G+ Sbjct: 184 PKVDSAVVRLVPYETLPHPANNLQWLERVCREGFNQRRKTVRNCYKSLMSEQVLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 +R ENL+++ F + N L N Sbjct: 244 PGMRPENLTLQQFVAMANWLDANH 267 >gi|77361550|ref|YP_341125.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis TAC125] gi|119365048|sp|Q3IFD1|RSMA_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|76876461|emb|CAI87683.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, Kasugamycin dimethyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 268 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 97/269 (36%), Positives = 138/269 (51%), Gaps = 23/269 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ KI + ++EIG G G +T+ + L + V+E D Sbjct: 12 RKRFGQNFLFDDMIIGKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTVVELD-- 68 Query: 82 FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 KD++ +HP +L + Q DA+ DF +++ NLPYNI T LLF Sbjct: 69 -----KDLAQRLIEHPFLGPKLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + AD E + + QKEV +R+ A S +GRLSV+T + A + ++ P Sbjct: 124 HLFEFADNI----EHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPEC 179 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S VI IP P +S+K + EAF +RRKTLR SL L + L Sbjct: 180 FKPAPKVDSAVIRLIPK-KPEQRTAKSVKILNNVCLEAFNQRRKTLRNSLSNLLTADELT 238 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ LRAE LS++ F I N + DN+ Sbjct: 239 SIGIDVTLRAERLSLQQFIDIANWIYDNK 267 >gi|323342302|ref|ZP_08082534.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463414|gb|EFY08608.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 270 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 145/279 (51%), Gaps = 17/279 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N S S++ +L Y+ KK+ GQNF++D ++++ IA SG+ G TV+EIG G G L Sbjct: 3 TIANYSVSME-LLRRYERRAKKHFGQNFIIDPSVVRNIASQSGA--GGTVLEIGPGLGAL 59 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 TQ L KVI E D IL + ++ N + +I D LK D + + PI + Sbjct: 60 TQQLAE-TYDKVIAYEIDPHMVEILNETLEEYDN-VNVIHQDFLKADLSMY---TEPITV 114 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ANLPY I T +LF + D ++T++ QKE+ +R+ A + Y LS+ + Sbjct: 115 CANLPYYITTPILFRLMELDIV-----AMTIMVQKEIADRLGASPQTKDYSSLSIQMQYY 169 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + +S F P P V S VI P +P ++ + ++ F RRKTL +L Sbjct: 170 FDVKTVLKVSKESFHPRPGVESIVIKLTPKHQTMPYDEKTFFEFVKKCFQFRRKTLVNNL 229 Query: 242 KRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 K + + +L G+ETN+RA+ L+ +D+ R+ L Sbjct: 230 KTIDKDVDYATVLESLGLETNIRADYLTFDDYIRLYGAL 268 >gi|258452826|ref|ZP_05700821.1| dimethyladenosine transferase [Staphylococcus aureus A5948] gi|257859512|gb|EEV82365.1| dimethyladenosine transferase [Staphylococcus aureus A5948] Length = 297 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 14 RALLDKYGFNLKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 73 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285 >gi|171779142|ref|ZP_02920113.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282198|gb|EDT47625.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 290 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N +++I +D LK D + +F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ QKEV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ P+ + ++++ F RRKTL +L Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKIGFVHRRKTLWNNLTSH 244 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI +F ++ + L + Sbjct: 245 FGKADEIKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|331092538|ref|ZP_08341360.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330400759|gb|EGG80362.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 292 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 149/286 (52%), Gaps = 19/286 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ IL Y+ +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 7 TLGNPQNTIE-ILQKYQFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 65 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L + AR+V+ +E D+ PIL D S N + II +D LKVD N P Sbjct: 66 TQYLAS-AAREVVAVEIDKALIPILSDTLSGFDN-VTIINNDVLKVDIGALAQEHNNGRP 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ ++ ES+T++ QKEV ER+ + YG LS+ Sbjct: 124 IKVVANLPYYITTPIIMGLFESNVP---IESITVMVQKEVAERMQVGPGTKDYGALSLAV 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI H P ++ + KI + +F +RRKT Sbjct: 181 QYYAKPYIVANVPPNCFMPRPKVASAVIRLERHKEPPVSVVDEKLMFKIIRASFNQRRKT 240 Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274 L L +L + + G +R E L++++F +++ Sbjct: 241 LANGLNNSPEIHLPKDVITEAIKELGKGAGVRGEVLTLQEFATLSD 286 >gi|153834241|ref|ZP_01986908.1| dimethyladenosine transferase [Vibrio harveyi HY01] gi|148869429|gb|EDL68435.1| dimethyladenosine transferase [Vibrio harveyi HY01] Length = 269 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L+++ +E F +RRKT+R K L +L + G+ Sbjct: 184 PKVDSAVVRLVPYEELPHPAKDFRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 ++R ENL+++ F + N L DN Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266 >gi|332534338|ref|ZP_08410181.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis ANT/505] gi|332036248|gb|EGI72721.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis ANT/505] Length = 268 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 95/268 (35%), Positives = 137/268 (51%), Gaps = 21/268 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +I+ KI + ++EIG G G +T+ + L + V+E D Sbjct: 12 RKRFGQNFLFDESIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVADLSGH-LTVVELD-- 68 Query: 82 FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 KD++ +HP +L + Q DA+ DF +++ NLPYNI T LLF Sbjct: 69 -----KDLAQRLIEHPFLGPKLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV +R+ A S +GRLSV+T + A + ++ P F Sbjct: 124 HLFE---FSDHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVVEVPPECF 180 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P+PKV S VI IP P +S+K + EAF +RRKTLR SL L L Sbjct: 181 KPAPKVDSAVIRLIPK-KPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEELTS 239 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ LRAE LS++ F I N + DN+ Sbjct: 240 IGIDITLRAERLSLQQFIDIANWIYDNK 267 >gi|254496674|ref|ZP_05109537.1| dimethyladenosine transferase [Legionella drancourtii LLAP12] gi|254354102|gb|EET12774.1| dimethyladenosine transferase [Legionella drancourtii LLAP12] Length = 256 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 136/260 (52%), Gaps = 10/260 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL +++ I S ++EIG G G LT+ LL +++ IE D Sbjct: 5 PRKRFGQNFLQSRHVIDDILRSINPQLEDNLLEIGPGLGALTEPLLR-RLKRMTAIEIDT 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L ++ +L +I DAL VD+ +F + +R+I NLPYNI T LL + + Sbjct: 64 DLQKYLSELPIAQ-GKLNLIAADALTVDYSQF---GAKLRVIGNLPYNISTPLLIHLLR- 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + PF E + + QKEV ER+ AQ + YGRL+V+ + +F + P F P PK Sbjct: 119 --FAPFIEDMHFMLQKEVVERMAAQPGTKDYGRLTVMLQYHCDVDYLFAVPPEAFEPRPK 176 Query: 201 VTSTVIHFIPH-LNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P+ +P +E L+++ AF RRKTL +LK + L GI+ Sbjct: 177 VDSAVVRLVPYEKSPFESVAVEQLERLVASAFAMRRKTLNNNLKGIISAEQLLDLGIDGG 236 Query: 259 LRAENLSIEDFCRITNILTD 278 R E +S+ ++ ++ +++ Sbjct: 237 RRPEQISVAEYVQLAKFVSN 256 >gi|315639886|ref|ZP_07895017.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952] gi|315484311|gb|EFU74776.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952] Length = 295 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 154/287 (53%), Gaps = 23/287 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69 + IL+ + KK +GQNFL D NIL+ I ++G +D T VIE+G G G LT+ L Sbjct: 14 REILAKHGFTFKKSLGQNFLTDPNILRNIV-AAGDIDQDTNVIEVGPGIGALTE-YLARA 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124 A +V+ E D + P+L D S + N + +I D L+ E+F N P++++AN Sbjct: 72 AHQVVAFEIDDRLLPVLADTLSPYDN-VSVIHQDILQARIDHVLQEQFTNDGRPVKVVAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T ++ +++ + + ++ QKEV +RI+A+ + YG LS+ + +A Sbjct: 131 LPYYITTPIMMHFLDSKVE---IAEMIVMMQKEVADRISAKPGTKAYGSLSIAVQYYMEA 187 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLK 242 ++ F + VF P P V S ++ P + ++ +T+ AF +RRKT +L+ Sbjct: 188 SVAFIVPKTVFVPQPNVDSAILKLTRRPQPAVDVINEKAFFGLTKAAFLQRRKTFWNNLQ 247 Query: 243 RLGGENLLHQAGIETNL---------RAENLSIEDFCRITNILTDNQ 280 G++ +A ++ +L R E LS+E+F R++N++ N+ Sbjct: 248 SYYGKDEATKAWLQQSLKEAEIDPIRRGETLSLEEFARLSNVMEANK 294 >gi|212693622|ref|ZP_03301750.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855] gi|237708782|ref|ZP_04539263.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA] gi|237724220|ref|ZP_04554701.1| dimethyladenosine transferase [Bacteroides sp. D4] gi|265755952|ref|ZP_06090419.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA] gi|212663875|gb|EEB24449.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855] gi|229437408|gb|EEO47485.1| dimethyladenosine transferase [Bacteroides dorei 5_1_36/D4] gi|229457208|gb|EEO62929.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA] gi|263234030|gb|EEZ19631.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA] Length = 280 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E D Sbjct: 6 PKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQ-KNRAVKVVELDY 64 Query: 80 ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 ++ FP L+D II+DD LK++ EK F+ P + N PYNI +++ Sbjct: 65 ESVTYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + QKEV ERI A S YG LS+L K +F + H Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251 VF P PKV S VI + C E L K I + F +RRKTLR S+ L EN L Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPL- 230 Query: 252 QAGIETNLRAENLSIEDFCRITN 274 A + N R E LS+ +F +TN Sbjct: 231 SADLIFNKRPEQLSVSEFIELTN 253 >gi|295094395|emb|CBK83486.1| dimethyladenosine transferase [Coprococcus sp. ART55/1] Length = 287 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 152/290 (52%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N +++TI Y+ +K GQNFL+D +++ KI ++ V+EIG G G +T Sbjct: 4 LSNPQVTIETI-KKYEFAFQKKFGQNFLIDAHVINKIISAADITKDDCVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L A +V+ +E D+ PIL + +++ N + II DD LKVD K N PI Sbjct: 63 QYLAE-SAGQVVAVEIDKNLLPILDETLAEYDN-VTIINDDILKVDINKIVEERNGGRPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ P S+T++ QKEV +R+ + YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFEKHV--PLL-SVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI + P P ++ + ++ + +F +RRKT Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLNRYQEP-PVKVKDEQLMFRLIRASFNQRRKT 236 Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ + G L GI N+R E+LS+ +F +++ILTD Sbjct: 237 LQNGIANSGELSFTKEQIAKALESLGISANIRGESLSLAEFAALSDILTD 286 >gi|321313712|ref|YP_004205999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus subtilis BSn5] gi|320019986|gb|ADV94972.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus subtilis BSn5] Length = 292 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 144/279 (51%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + + + VIEIG G G LT+ L A Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV+ E DQ+ PILKD S + N + +I D LK D E+ F I ++ANLP Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTL------- 237 + + VF P P V S VI + P + ES ++ + +F +RRKTL Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLVLRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVNN 246 Query: 238 --RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 ++ E +L + I+ R E+LSIE+F ++N Sbjct: 247 LPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSN 285 >gi|282931722|ref|ZP_06337210.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] gi|297205158|ref|ZP_06922554.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16] gi|281304165|gb|EFA96279.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] gi|297149736|gb|EFH30033.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16] Length = 293 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 20/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y KK +GQNFL+ LN + I +++ V+EIG G G+LT+ +L GA Sbjct: 14 KAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRGA 73 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV+ E DQ IL + + ++H + +++ D LK DF++ FF+++ PI+ Sbjct: 74 -KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPIK 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D +ESLTL+ QKEV ER+ A + YG L++ Sbjct: 133 VVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQT 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQ 239 + M + F P PKV S V+ P + E+ + + + F +RRKTL Sbjct: 190 QMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLNN 249 Query: 240 SLKRL--GGE---NLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L GE NLL + R E L+I F + L Sbjct: 250 NLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKAL 291 >gi|257794266|ref|ZP_05643245.1| dimethyladenosine transferase [Staphylococcus aureus A9781] gi|258407216|ref|ZP_05680361.1| dimethyladenosine transferase [Staphylococcus aureus A9763] gi|258420817|ref|ZP_05683753.1| dimethyladenosine transferase [Staphylococcus aureus A9719] gi|258424472|ref|ZP_05687351.1| dimethyladenosine transferase [Staphylococcus aureus A9635] gi|257788238|gb|EEV26578.1| dimethyladenosine transferase [Staphylococcus aureus A9781] gi|257841174|gb|EEV65623.1| dimethyladenosine transferase [Staphylococcus aureus A9763] gi|257843209|gb|EEV67622.1| dimethyladenosine transferase [Staphylococcus aureus A9719] gi|257845341|gb|EEV69376.1| dimethyladenosine transferase [Staphylococcus aureus A9635] Length = 299 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 16 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 74 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 75 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 133 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 134 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 190 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 191 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 250 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 251 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 287 >gi|241668930|ref|ZP_04756508.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877462|ref|ZP_05250172.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843483|gb|EET21897.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 262 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 140/263 (53%), Gaps = 9/263 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ +L + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILKC-SDNVNV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134 +E D L + Q ++ +D LK D + + ++++ NLPYNI + +L Sbjct: 61 VEFDASVIDTLLQ-NCQKYGEPKVFNEDFLKFDLDIVRADSQQKLKLVGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI +Q NS YGRLSV+ + +M+ +I P V Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P ++ + + I +++F +RRKTL +LK + E ++ + Sbjct: 177 FYPQPKVDSAILRLKPKVDKLVVNDYVFFENIVKQSFAQRRKTLHNNLKGILKEFDINPS 236 Query: 254 G--IETNLRAENLSIEDFCRITN 274 ++T LRAENLS+EDF + N Sbjct: 237 ALPVDTKLRAENLSVEDFVSLAN 259 >gi|78043122|ref|YP_361409.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans Z-2901] gi|119365012|sp|Q3A8X5|RSMA_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77995237|gb|ABB14136.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans Z-2901] Length = 291 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 148/283 (52%), Gaps = 23/283 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +LK IL+ + + +GQ+FL D IL KI E + V+EIG G G LT+ LL Sbjct: 8 TLKEILARHNLTLSHGLGQHFLTDFGILAKIVEKAEITKDDAVLEIGPGAGVLTR-LLAQ 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPI 119 A+ V+ IE D++ P+L + + N + ++ DA +++F++ F P Sbjct: 67 AAKYVVAIEIDKKLLPVLAETTGDLGNVV-VVNADAREINFDRVMAEQTGGEFGFEGKPY 125 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 I+ANLPY + L+F S+TL+ QKEV ERITA+ S YG LSV Sbjct: 126 LIVANLPYYATSPLIFKVFEEGYK---VSSMTLMMQKEVAERITAKPGSKIYGSLSVACQ 182 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237 + ++ ++ + VFFP P+V S V+ F N + E LK +I + AF RRKT+ Sbjct: 183 YFSEPRIVLKVPRTVFFPPPEVESAVVRFTLKENSL-TSEERLKFFQIVRAAFATRRKTI 241 Query: 238 RQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 +S LKR E +L + GI+ +LRAE + E F R++ Sbjct: 242 AKSLSGALNLKRNYVEEVLLKVGIKPDLRAEQIPPESFYRLSQ 284 >gi|306817223|ref|ZP_07450970.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239] gi|304650025|gb|EFM47303.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239] Length = 303 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 143/299 (47%), Gaps = 28/299 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ + I P K GQNF+ D +++IA + V+EIG G G+ Sbjct: 1 MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSPAEVVLEIGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVDFEKFFNISS 117 LT LL GAR VI +E D + L H +E + DAL +D + Sbjct: 61 LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+ ++ANLPYN+ T +L + + P ++ Q EV +R+ A+ YG Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF---IPHLNPI-----PCCLESLKKI 225 SV W A F +S VF P P V STV+ F P L P +E+L++ Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236 Query: 226 TQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 + E AFG RRKTLRQSL RL G LL +AGI+ LRAENL + DF + + Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295 >gi|255311159|ref|ZP_05353729.1| dimethyladenosine transferase [Chlamydia trachomatis 6276] gi|255317460|ref|ZP_05358706.1| dimethyladenosine transferase [Chlamydia trachomatis 6276s] Length = 277 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK + QNFL+D NIL+KI ++ G V+EIG G G L+++LL+ GA VI +EKD Sbjct: 21 KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 P+ + SQ P +EI DA K + RI+ANLPY+I T LL + Sbjct: 78 --PMFEGSLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P W+++T++ Q EV RITA+ YG L+V + F +SP+ F+P P Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191 Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253 V S V+H H +E +T+ AFG+RRK L SLK L ++ +L Q Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G R E + +E++ +I ++L D Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|237802779|ref|YP_002887973.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT] gi|231274013|emb|CAX10806.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT] Length = 277 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK + QNFL+D NIL+KI ++ G V+EIG G G L+++LL+ GA VI +EKD Sbjct: 21 KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 P+ ++ SQ P +EI DA K + RI+ANLPY+I T LL + Sbjct: 78 --PMFEESLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P W+++T++ Q EV RITA+ YG L+V F +SP+ F+P P Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSLFADVQYAFKVSPNCFYPKP 191 Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253 V S V+H H +E +T+ AFG+RRK L SLK L ++ +L Q Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G R E + +E++ +I ++L D Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|291537682|emb|CBL10794.1| dimethyladenosine transferase [Roseburia intestinalis M50/1] gi|291537815|emb|CBL10926.1| dimethyladenosine transferase [Roseburia intestinalis XB6B4] Length = 290 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +L Y +K GQNFL+D ++L+KI E++G V+EIG G G +TQ L AR Sbjct: 12 AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCE-NAR 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128 +V +E D PIL+D S + N + +I D LK+D K N PI+++ANLPY Sbjct: 71 EVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKPIKVVANLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + +S+T++ QKEV +R+ + YG LS+ + K ++ Sbjct: 130 ITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAVQFYAKPQIVA 186 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK--- 242 ++ P+ F P P V S VI H +P ++ K I + +F +RRKTL L Sbjct: 187 NVPPNCFMPRPNVGSAVIRLTRH-EEVPVQVDDEKLMFHIIRASFNQRRKTLANGLSNAP 245 Query: 243 --RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L E + + + G +R E L++E F ++NI+ + Q Sbjct: 246 QVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288 >gi|256851971|ref|ZP_05557358.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN] gi|260661459|ref|ZP_05862372.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN] gi|256615383|gb|EEU20573.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN] gi|260547914|gb|EEX23891.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN] Length = 297 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 20/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y KK +GQNFL+ LN + I +++ V+EIG G G+LT+ +L GA Sbjct: 18 KAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRGA 77 Query: 71 RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120 KV+ E DQ IL + + ++H + +++ D LK DF++ FF+++ PI+ Sbjct: 78 -KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPIK 136 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++F +D +ESLTL+ QKEV ER+ A + YG L++ Sbjct: 137 VVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQT 193 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQ 239 + M + F P PKV S V+ P + E+ + + + F +RRKTL Sbjct: 194 QMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLNN 253 Query: 240 SLKRL--GGE---NLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L GE NLL + R E L+I F + L Sbjct: 254 NLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKAL 295 >gi|253730960|ref|ZP_04865125.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735227|ref|ZP_04869392.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH130] gi|297207404|ref|ZP_06923843.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910363|ref|ZP_07127816.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH70] gi|304380509|ref|ZP_07363186.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253725310|gb|EES94039.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726787|gb|EES95516.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH130] gi|296887967|gb|EFH26861.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888352|gb|EFK83539.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH70] gi|302750383|gb|ADL64560.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340954|gb|EFM06877.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320139421|gb|EFW31299.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144198|gb|EFW35966.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MRSA177] Length = 303 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 20 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 79 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 137 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 138 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 194 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 195 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 254 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 255 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 291 >gi|56707611|ref|YP_169507.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670082|ref|YP_666639.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis FSC198] gi|224456681|ref|ZP_03665154.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370128|ref|ZP_04986134.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis FSC033] gi|254874431|ref|ZP_05247141.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis MA00-2987] gi|62900471|sp|Q5NHI5|RSMA_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600868|sp|Q14IY7|RSMA_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56604103|emb|CAG45102.1| dimethyladenosine transferase , kasugamycin resistance [Francisella tularensis subsp. tularensis SCHU S4] gi|110320415|emb|CAL08485.1| dimethyladenosine transferase , kasugamycin resistance [Francisella tularensis subsp. tularensis FSC198] gi|151568372|gb|EDN34026.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis FSC033] gi|254840430|gb|EET18866.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158768|gb|ADA78159.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis NE061598] Length = 262 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 138/266 (51%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL+ + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS GRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|298693823|gb|ADI97045.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ED133] Length = 297 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 14 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + +K I ++ANLP Sbjct: 73 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKKAVENHLQDCEKIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285 >gi|154684561|ref|YP_001419722.1| dimethyladenosine transferase [Bacillus amyloliquefaciens FZB42] gi|154350412|gb|ABS72491.1| KsgA [Bacillus amyloliquefaciens FZB42] Length = 293 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 148/297 (49%), Gaps = 32/297 (10%) Query: 3 MNNKSHSL----KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MNNK + K IL Y KK +GQNFL+D NIL +I + + D VIEIG G Sbjct: 1 MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114 G LT+ L A+KV+ E DQ+ PIL D S + N + II D LK D E+ F Sbjct: 61 GALTEQLAK-RAKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVKSVIEEQFQ 118 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I + ANLPY + T ++ + + P + + ++ QKEV ER+ A +S YG L Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQE 228 S+ + T+A + + VF P P V S VI + P P + +K Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNEPFFFQLIKA---- 231 Query: 229 AFGKRRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +F +RRKTL +L K+ E +L + I+ R E+LSIE+F ++N L Sbjct: 232 SFAQRRKTLLNNLVNNLPGGKEKKAQIEEVLQETNIDGKRRGESLSIEEFALLSNGL 288 >gi|332978369|gb|EGK15092.1| dimethyladenosine transferase [Psychrobacter sp. 1501(2011)] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 150/293 (51%), Gaps = 22/293 (7%) Query: 1 MTMNNKS-HSLKTILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MT ++ S H L + L K P+K GQNFL D +I+ +I +S G ++EIG G Sbjct: 1 MTHSDASKHPLHSTLQKAAKHQPRKRFGQNFLHDDSIIIQIVDSIGLNRDDNLVEIGPGM 60 Query: 59 GNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115 G LT+ LL + A VI +++D ++ ++ HPN I+ +A++ D+ +N Sbjct: 61 GALTEPLLEQVDAMTVIELDRDLASSLRIRIGANSHPN-FHIVNTNAMQFDYSTLYNKEG 119 Query: 116 ----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + +RI+ NLPYNI T LLF + + E + + QKEV ERITA S Y Sbjct: 120 EGAETKKLRIVGNLPYNISTPLLFTLLD---YSDIIEDMHFMLQKEVVERITADVGSKIY 176 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEA 229 GRLSV+ + + + + F P PKVTS V PHL P+ E L + +E Sbjct: 177 GRLSVIMQYHCETEYLLTVPRGAFNPPPKVTSAVFRLRPHLTKPVQAEDEKLFALVVRET 236 Query: 230 FGKRRKTLRQSLKR------LGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 F RRKTLR K+ L E+ GIE R E L ++DF ++N++ Sbjct: 237 FNHRRKTLRAIFKQSSLMATLTDED-FDSIGIEGTARPETLDVKDFVALSNLV 288 >gi|149191630|ref|ZP_01869874.1| dimethyladenosine transferase [Vibrio shilonii AK1] gi|148834530|gb|EDL51523.1| dimethyladenosine transferase [Vibrio shilonii AK1] Length = 268 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 139/265 (52%), Gaps = 13/265 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYVIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA++ DF + N ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLGDKLTIHEGDAMRFDFTQLVNPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L+ L ++ ++ F +RRKT+R K L L + G+ Sbjct: 184 PKVDSAVVRLVPYEELPYPATSLKWLDRVCRDGFNQRRKTVRNCYKSLMSAETLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 ++R ENL+++ F + N L +N + Sbjct: 244 PSMRPENLTLQQFVAMANWLDENHN 268 >gi|312898803|ref|ZP_07758191.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359] gi|310619965|gb|EFQ03537.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359] Length = 285 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 139/272 (51%), Gaps = 13/272 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I+ + + K GQNFL+ +++K IA ++ +G V+EIG G G LTQ L Sbjct: 13 VRYIVKRFNLRMSKKWGQNFLIRPDVVKNIAIAADIGEGDEVLEIGPGIGTLTQALAETK 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +E D + PIL + N + II D LK+D K N S + ANLPY I Sbjct: 73 A-SVTAVEIDDRLLPILDKTLEDYEN-VRIIHGDILKIDINKEMNERS-FTVCANLPYYI 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + + P + ++ QKEV ER+TA+ S YG LSV + TK FD Sbjct: 130 TTPIIMRLLE-ERLP--IRKMVVMVQKEVAERMTAKPGSRIYGALSVAVQYYTKPRCEFD 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-- 245 ISP F P P VTSTV+ P + ++ + AF +RRKTL +LK G Sbjct: 187 ISPQSFLPPPAVTSTVVSMEVRTEPAVAVKDEKLFFRVVKFAFAQRRKTLLNALKGGGVP 246 Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITN 274 +L +GI+ + R E LS+++F I + Sbjct: 247 TEEASCMLETSGIDGSRRGETLSLQEFASIAD 278 >gi|240145093|ref|ZP_04743694.1| dimethyladenosine transferase [Roseburia intestinalis L1-82] gi|257202765|gb|EEV01050.1| dimethyladenosine transferase [Roseburia intestinalis L1-82] Length = 290 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +L Y +K GQNFL+D ++L+KI E++G V+EIG G G +TQ L AR Sbjct: 12 AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCE-NAR 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128 +V +E D PIL+D S + N + +I D LK+D K N PI+++ANLPY Sbjct: 71 EVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKPIKVVANLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + +S+T++ QKEV +R+ + YG LS+ + K ++ Sbjct: 130 ITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAVQFYAKPEIVA 186 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK--- 242 ++ P+ F P P V S VI H +P ++ K I + +F +RRKTL L Sbjct: 187 NVPPNCFMPRPNVGSAVIRLTRH-EEVPVQVDDEKLMFHIIRASFNQRRKTLANGLSNAP 245 Query: 243 --RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L E + + + G +R E L++E F ++NI+ + Q Sbjct: 246 QVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288 >gi|15926170|ref|NP_373703.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus N315] gi|21282177|ref|NP_645265.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MW2] gi|49485357|ref|YP_042578.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MSSA476] gi|57634617|ref|NP_371017.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu50] gi|57651375|ref|YP_185424.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus COL] gi|87160474|ref|YP_493179.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194251|ref|YP_499043.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266951|ref|YP_001245894.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH9] gi|150392997|ref|YP_001315672.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH1] gi|156978821|ref|YP_001441080.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu3] gi|161508739|ref|YP_001574398.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142315|ref|ZP_03566808.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316230|ref|ZP_04839443.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005286|ref|ZP_05143887.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258429609|ref|ZP_05688283.1| ksgA protein [Staphylococcus aureus A9299] gi|258446120|ref|ZP_05694281.1| dimethyladenosine transferase [Staphylococcus aureus A6300] gi|258448028|ref|ZP_05696158.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224] gi|258453825|ref|ZP_05701798.1| dimethyladenosine transferase [Staphylococcus aureus A5937] gi|262049978|ref|ZP_06022837.1| dimethyladenosine transferase [Staphylococcus aureus D30] gi|262052522|ref|ZP_06024719.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3] gi|269202113|ref|YP_003281382.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ED98] gi|282895100|ref|ZP_06303320.1| dimethyladenosine transferase [Staphylococcus aureus A8117] gi|282915811|ref|ZP_06323579.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus D139] gi|282925567|ref|ZP_06333220.1| dimethyladenosine transferase [Staphylococcus aureus A9765] gi|283768928|ref|ZP_06341837.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus H19] gi|284023502|ref|ZP_06377900.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 132] gi|294850352|ref|ZP_06791085.1| dimethyladenosine transferase [Staphylococcus aureus A9754] gi|295407382|ref|ZP_06817179.1| dimethyladenosine transferase [Staphylococcus aureus A8819] gi|296276552|ref|ZP_06859059.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MR1] gi|297246462|ref|ZP_06930302.1| dimethyladenosine transferase [Staphylococcus aureus A8796] gi|47606760|sp|Q932G1|RSMA_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54037709|sp|P66663|RSMA_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54041550|sp|P66662|RSMA_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900458|sp|Q5HII3|RSMA_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900527|sp|Q6GBZ5|RSMA_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365846|sp|Q2FJE9|RSMA_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365847|sp|Q2G0T0|RSMA_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221707|sp|A7WYP0|RSMA_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028820|sp|A6TYW7|RSMA_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028821|sp|A5IQ45|RSMA_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028822|sp|A8Z0Y8|RSMA_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13700383|dbj|BAB41681.1| ksgA [Staphylococcus aureus subsp. aureus N315] gi|21203613|dbj|BAB94313.1| ksgA [Staphylococcus aureus subsp. aureus MW2] gi|46395517|dbj|BAB56655.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu50] gi|49243800|emb|CAG42225.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus MSSA476] gi|57285561|gb|AAW37655.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus COL] gi|87126448|gb|ABD20962.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201809|gb|ABD29619.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740020|gb|ABQ48318.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH9] gi|149945449|gb|ABR51385.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH1] gi|156720956|dbj|BAF77373.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu3] gi|160367548|gb|ABX28519.1| possible dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257849668|gb|EEV73635.1| ksgA protein [Staphylococcus aureus A9299] gi|257855097|gb|EEV78039.1| dimethyladenosine transferase [Staphylococcus aureus A6300] gi|257858718|gb|EEV81591.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224] gi|257863996|gb|EEV86751.1| dimethyladenosine transferase [Staphylococcus aureus A5937] gi|259159569|gb|EEW44616.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3] gi|259161913|gb|EEW46496.1| dimethyladenosine transferase [Staphylococcus aureus D30] gi|262074403|gb|ACY10376.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ED98] gi|269940064|emb|CBI48440.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus TW20] gi|282320302|gb|EFB50644.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus D139] gi|282592471|gb|EFB97483.1| dimethyladenosine transferase [Staphylococcus aureus A9765] gi|282762518|gb|EFC02658.1| dimethyladenosine transferase [Staphylococcus aureus A8117] gi|283461109|gb|EFC08195.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus H19] gi|283469785|emb|CAQ48996.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ST398] gi|285816192|gb|ADC36679.1| Dimethyladenosine transferase [Staphylococcus aureus 04-02981] gi|294822776|gb|EFG39212.1| dimethyladenosine transferase [Staphylococcus aureus A9754] gi|294967739|gb|EFG43771.1| dimethyladenosine transferase [Staphylococcus aureus A8819] gi|297176649|gb|EFH35911.1| dimethyladenosine transferase [Staphylococcus aureus A8796] gi|312828988|emb|CBX33830.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128619|gb|EFT84622.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196174|gb|EFU26530.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus CGS01] gi|329313211|gb|AEB87624.1| Ribosomal RNA small subunit methyltransferase A [Staphylococcus aureus subsp. aureus T0131] gi|329725046|gb|EGG61541.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 21172] gi|329729797|gb|EGG66194.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 21189] gi|329731076|gb|EGG67448.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 21193] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 14 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 73 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285 >gi|313639861|gb|EFS04574.1| dimethyladenosine transferase [Listeria seeligeri FSL S4-171] Length = 284 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 144/280 (51%), Gaps = 29/280 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLPY 131 Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 + T +LL + I AD S+T + QKEV +RI+A ++ YG L++ + + Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241 A + F + VF P P V S VIH P+ + ++T+ +F +RRKTL +L Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNL 244 Query: 242 KRLGGE---------NLLHQAGIETNLRAENLSIEDFCRI 272 E L+ GI+ R E L I +F ++ Sbjct: 245 ASKFPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKL 284 >gi|189461759|ref|ZP_03010544.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136] gi|189431519|gb|EDV00504.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136] Length = 262 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 134/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + K IA++ + + ++E+G G G LTQ L+ G R V V+E D Sbjct: 6 PKKFLGQHFLKDLQVAKDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RPVKVVELDF 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ ++ + II+ D LK+D FN +P + N PYNI +++ F + Sbjct: 65 ESVAYLRENFAELGDN--IIEQDFLKMDLSALFN-GNPFVLTGNYPYNISSQIFFKMLDY 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A + YG LSVL K +F + HVF P PK Sbjct: 122 KDLIP---CCTGMIQKEVAERIAACPGNKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K+I + F +RRKTLR S+ + + A N Sbjct: 179 VKSAVIRMTRNETKELGCNEKLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+EDF +TN Sbjct: 239 RPEQLSVEDFIELTN 253 >gi|168205777|ref|ZP_02631782.1| dimethyladenosine transferase [Clostridium perfringens E str. JGS1987] gi|168209755|ref|ZP_02635380.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC 3626] gi|168217634|ref|ZP_02643259.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239] gi|170662648|gb|EDT15331.1| dimethyladenosine transferase [Clostridium perfringens E str. JGS1987] gi|170712059|gb|EDT24241.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC 3626] gi|182380335|gb|EDT77814.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239] Length = 285 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 14/279 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K K ++ Y K +GQNFL+D ++ + I + + VIEIG G G LT L Sbjct: 7 KDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A++V+ IE D PIL +P + ++I +DALKVDF + ++++ANL Sbjct: 67 LK-RAKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGAEKSVKLVANL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ N + ++SLT++ QKEV ER+ A+ N YG LS+L + Sbjct: 125 PYYVTTPIIVNLLKGGYN---FKSLTIMIQKEVAERMNAEPNCKDYGALSILVQYYCNTK 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242 ++ + P F P PKV S VI + L +++ K +I + AF RRKTL + K Sbjct: 182 IVRKVPPSCFIPRPKVDSIVIR-LERLEEPSVKVKNEKLFFEIVRHAFNMRRKTLWNATK 240 Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + E + GI+ R E LS+ +F +++ + Sbjct: 241 NVKLPKELMEKAYEEVGIDPKRRGETLSLAEFGALSDAI 279 >gi|309390027|gb|ADO77907.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 23/282 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LG 69 K IL+ Y + KK +GQNFL+D NI++ I+ S+ +IEIG G G+LTQ +L L Sbjct: 12 KKILNKYNLNLKKSLGQNFLVDQNIIEIISSSAAIKGDEFIIEIGPGIGSLTQSILNKLK 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 ++ +EKD +L DI ++ N+L +I DALK+D EK+ ++++ANL Sbjct: 72 TGNLLAVEKDAAMVEVLNDIFAEE-NKLTLINQDALKIDWPEILEKYNPEKKKVKLLANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + ++ E++ + QKEVGERI A + +G LSV + + Sbjct: 131 PYYVTTPIIMGVLESEIE---LENMVFMVQKEVGERICAGPETKKFGSLSVAVQYYMQPE 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-----KITQEAFGKRRKTLRQS 240 ++ + +VF P P V S ++ P+ I E L +I + F +RRKTLR S Sbjct: 188 IIHQVPANVFIPQPNVDSVIVGLAPYPENI-YQKEVLNQDFFFQIVKSIFQQRRKTLRNS 246 Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274 L R NL L+ GI R E LSI + I+N Sbjct: 247 LSRSAIINLDRDLVTQALNDEGIGIKKRGEKLSILEMISISN 288 >gi|78222518|ref|YP_384265.1| dimethyladenosine transferase [Geobacter metallireducens GS-15] gi|118600869|sp|Q39W34|RSMA_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78193773|gb|ABB31540.1| dimethyladenosine transferase [Geobacter metallireducens GS-15] Length = 275 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 136/269 (50%), Gaps = 16/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I +K +GQNFL+D ++L +IA+ ++E+G G G LT+ML AR ++ +E Sbjct: 6 IRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCAR-LVAVEL 64 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFN 136 D + P+L+ +P R+EI+ D L++D R + ANLPYNI T +LF Sbjct: 65 DTRLVPVLRQAFRDNP-RVEIVHGDILEIDLRDLLAYEGGERWKVAANLPYNISTPVLFA 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + L L+ QKEVG+R+ A + YG LSV T + P F Sbjct: 124 FLDNRD---LFSRLVLMLQKEVGDRLAASPGTKDYGILSVFFQLHFDVTREMIVRPGSFH 180 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG----GENL- 249 P PKV S V+ F+P P + +++ + AF RRKTL LK G GE L Sbjct: 181 PVPKVDSAVLSFVPLEKPRVAVGDEQYFRRLVKGAFSMRRKTLWNCLKNAGLGLSGEQLS 240 Query: 250 --LHQAGIETNLRAENLSIEDFCRITNIL 276 L GIE R E LS+++F ++ + Sbjct: 241 EALAVCGIEPGRRGETLSLDEFAALSRAM 269 >gi|317473695|ref|ZP_07932982.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA] gi|316898816|gb|EFV20843.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA] Length = 286 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 18/277 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D ++L+KI +++ V+EIG G G +TQ L+ AR+ Sbjct: 13 IIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITKDDFVLEIGPGIGTMTQ-YLSEHARE 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 V+ +E D PILK+ + + N +E++ +D LKVD K N PI+++ANLPY I Sbjct: 72 VMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGRPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +SLT++ QKEV +R+ A + YG LS+ + + ++ + Sbjct: 131 TTPIIMGLFEKNVP---MDSLTVMVQKEVAQRMQAGPGTKDYGALSLAVQFYAEPYIVAN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLK----- 242 + P+ F P PKV S VI + + P+ E L I + +F +RRKTL+ + Sbjct: 188 VPPNCFMPRPKVGSAVICLTRYKDMPVKVKNEQLMFSIIRASFNQRRKTLQNGINNSSTL 247 Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 E + L + G+ +R E LS+E F R++++L Sbjct: 248 HFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLL 284 >gi|255506936|ref|ZP_05382575.1| dimethyladenosine transferase [Chlamydia trachomatis D(s)2923] gi|289525395|emb|CBJ14872.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2] gi|296434947|gb|ADH17125.1| dimethyladenosine transferase [Chlamydia trachomatis E/150] gi|296438667|gb|ADH20820.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023] Length = 277 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK + QNFL+D NIL+KI ++ G V+EIG G G L+++LL+ GA VI +EKD Sbjct: 21 KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 P+ ++ SQ P +EI DA + + RI+ANLPY+I T LL + Sbjct: 78 --PMFEESLSQLPMDIEIT--DACEYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P W+++T++ Q EV RITA+ YG L+V + F +SP+ F+P P Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191 Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253 V S V+H H +E +T+ AFG+RRK L SLK L ++ +L Q Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G R E + +E++ +I ++L D Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|160947751|ref|ZP_02094918.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270] gi|158446885|gb|EDP23880.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270] Length = 280 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/272 (34%), Positives = 142/272 (52%), Gaps = 14/272 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I + K GQNFL D NIL+KI E S VIEIG G G LT+ LL Sbjct: 9 IKEICDKFGFSFSKNFGQNFLTDRNILEKIVEVSAVGKDYGVIEIGPGFGVLTKFLLE-K 67 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126 A KV+ IE D + +L S++ N E +Q DALK+D +K I ++ANLP Sbjct: 68 AGKVVSIEIDTRLKEVLDYTLSEYDN-FEFVQSDALKIDLKKLIEEKFTQKKIVVVANLP 126 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + +D ES+T++ QKEV +R+ A +NS +S+ + A + Sbjct: 127 YYVTTPIITKLLESDLD---LESITIMVQKEVAQRLVADENSKDNSSISLFVKYYADANI 183 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 F +S +VF P+P V S+V++ +++ K+ + F RRKT+ S + G Sbjct: 184 AFSVSRNVFVPAPNVDSSVVNMKLKKEKFEYE-KTMFKLIKNGFENRRKTILNSFCKSGI 242 Query: 247 E-----NLLHQAGIETNLRAENLSIEDFCRIT 273 E +L + I+T +RAE LS++DF I Sbjct: 243 EKEKIIKILEKLDIDTRIRAEKLSLKDFKNIA 274 >gi|294778235|ref|ZP_06743661.1| dimethyladenosine transferase [Bacteroides vulgatus PC510] gi|294447863|gb|EFG16437.1| dimethyladenosine transferase [Bacteroides vulgatus PC510] Length = 280 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E D Sbjct: 6 PKKFLGQHFLKDLSIAKDIADTVNVCPDLPILEVGPGMGVLTQFIMQ-KNRPVKVVELDY 64 Query: 80 ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 ++ FP L+D II+DD LK++ EK F+ P + N PYNI +++ Sbjct: 65 ESVAYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + QKEV ERI A S YG LS+L K +F + H Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251 VF P PKV S VI + C E L K I + F +RRKTLR S+ L EN L Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLS 231 Query: 252 QAGIETNLRAENLSIEDFCRITN 274 I N R E LS+++F +TN Sbjct: 232 TDPI-FNKRPEQLSVQEFIELTN 253 >gi|229551483|ref|ZP_04440208.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1] gi|258540770|ref|YP_003175269.1| dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705] gi|229315166|gb|EEN81139.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1] gi|257152446|emb|CAR91418.1| Dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705] Length = 294 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 139/278 (50%), Gaps = 18/278 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ + VIEIG G G LTQ L A Sbjct: 13 AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLAD-QAH 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN ++ +D LK + + F+ + ++++ANLPY Sbjct: 72 QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A P S+T++ QKEV R++A S YG LS+ Sbjct: 131 YITTPILLHLLRAH-LP--LHSMTVMMQKEVAARLSATPGSKDYGSLSIAVQLVADVATA 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ +S ++ + AF RRKTL +L L Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRPEPLAAVKNPDSFDRLVRGAFASRRKTLWNNLVALF 247 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L A I RAE L+I DF R+ L Sbjct: 248 GKPNKAAIRTALSVAEIAPETRAEQLAITDFARLDEAL 285 >gi|238928059|ref|ZP_04659819.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531] gi|238884019|gb|EEQ47657.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531] Length = 292 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 149/273 (54%), Gaps = 14/273 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ + + K +GQNFL+D +++ I +++ TV+EIG G G LTQ L GA Sbjct: 15 RHILNAFHLRASKRLGQNFLVDAGVVRAIVDAADLSPADTVLEIGPGIGTLTQGLAESGA 74 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYN 128 R V+ +E D++ +L + + N + I+ D LK+D + N+ + +++ANLPY Sbjct: 75 R-VVAVELDKKLPAVLAETLKGYDN-VAIVPGDILKLDILRILNLGAGEQFKVVANLPYY 132 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + + P +T++ QKEV R+TA+ S YG LS+ + T A ++ Sbjct: 133 ITTPILMALL--EQHLPIARMVTMV-QKEVAVRMTARPGSKDYGALSIAVQYYTDAHIVM 189 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246 D+ P F P+P+VTS VI P C + ++ + AFG+RRKTL +L G Sbjct: 190 DVPPRAFMPAPEVTSAVIACRVRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAGL 249 Query: 247 ENLLHQ-----AGIETNLRAENLSIEDFCRITN 274 L + AG+ ++R E LS+ DF R+++ Sbjct: 250 TKELCRAGLAAAGLAASIRGEQLSLADFARLSD 282 >gi|237719828|ref|ZP_04550309.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4] gi|229451097|gb|EEO56888.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4] Length = 266 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 T + QKEV ERI A S YG LSVL K +F +S HVF P PK Sbjct: 122 KD---IVLCCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K++ + F +RRKTLR S+K + G++ I N Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+ +F +TN Sbjct: 239 RPEQLSVAEFIDLTN 253 >gi|150004476|ref|YP_001299220.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482] gi|166221645|sp|A6L1N4|RSMA_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149932900|gb|ABR39598.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482] Length = 280 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E D Sbjct: 6 PKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQ-KNRPVKVVELDY 64 Query: 80 ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 ++ FP L+D II+DD LK++ EK F+ P + N PYNI +++ Sbjct: 65 ESVAYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + QKEV ERI A S YG LS+L K +F + H Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251 VF P PKV S VI + C E L K I + F +RRKTLR S+ L EN L Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLS 231 Query: 252 QAGIETNLRAENLSIEDFCRITN 274 I N R E LS+++F +TN Sbjct: 232 ADPI-FNKRPEQLSVQEFIELTN 253 >gi|282907815|ref|ZP_06315653.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910131|ref|ZP_06317937.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282325979|gb|EFB56285.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328291|gb|EFB58566.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WW2703/97] Length = 299 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 16 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 74 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 75 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 133 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 134 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYTETSK 190 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 191 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 250 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 251 FKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKL 287 >gi|313884585|ref|ZP_07818346.1| dimethyladenosine transferase [Eremococcus coleocola ACS-139-V-Col8] gi|312620369|gb|EFR31797.1| dimethyladenosine transferase [Eremococcus coleocola ACS-139-V-Col8] Length = 296 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 150/279 (53%), Gaps = 26/279 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ +Y I KK +GQNFL++ NIL K+ ++ TVIEIG G G LT+ L L A++ Sbjct: 16 IMKYYDIAMKKSLGQNFLIEPNILDKMVAAADIDSDTTVIEIGPGIGALTE-FLALSAKQ 74 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR--IIANLPYN 128 V+ E D +F IL++ + + N +++I D LKVDF+ ++ ++ R ++ANLPY Sbjct: 75 VLAFEIDARFVSILENTLAAYDN-VKVIHQDILKVDFQAPEYASLKDLDRLVVVANLPYY 133 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + I D+ PF + L ++ QKEV ER+TAQ + Y L++ + +A + F Sbjct: 134 ITTPIIMHLI--DSHLPF-DRLVMMMQKEVAERMTAQVGTKAYNSLTIAIQLQMQARLDF 190 Query: 189 DISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + +VF P P V S V+ P L+ L + Q AF RRKTL + K Sbjct: 191 IVPKNVFIPKPNVDSAVLVLERLATPRLD--LADLSDFQNFVQAAFVYRRKTLWNNYKNA 248 Query: 245 GGENL-----------LHQAGIETNLRAENLSIEDFCRI 272 NL QA ++ R E+LS+E+F ++ Sbjct: 249 MSTNLADLSADQWEAIFDQAELDRQRRGESLSLEEFGQL 287 >gi|255348718|ref|ZP_05380725.1| dimethyladenosine transferase [Chlamydia trachomatis 70] gi|255503258|ref|ZP_05381648.1| dimethyladenosine transferase [Chlamydia trachomatis 70s] Length = 277 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK + QNFL+D NIL+KI ++ G V+EIG G G L+++LL+ GA VI +EKD Sbjct: 21 KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 P+ ++ SQ P +EI DA + + RI+ANLPY+I T LL + Sbjct: 78 --PMFEESLSQLPMDIEIT--DACEYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P W+++T++ Q EV RITA+ YG L+V + F +SP+ F+P P Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191 Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253 V S V+H H +E +T+ AFG+RRK L SLK L ++ +L Q Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G R E + +E++ +I ++L D Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|254882792|ref|ZP_05255502.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA] gi|319643892|ref|ZP_07998475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A] gi|254835585|gb|EET15894.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA] gi|317384509|gb|EFV65475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A] Length = 280 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E D Sbjct: 6 PKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQ-KNRPVKVVELDY 64 Query: 80 ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 ++ FP L+D II+DD LK++ EK F+ P + N PYNI +++ Sbjct: 65 ESVAYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + QKEV ERI A S YG LS+L K +F + H Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251 VF P PKV S VI + C E L K I + F +RRKTLR S+ L EN L Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLS 231 Query: 252 QAGIETNLRAENLSIEDFCRITN 274 I N R E LS+++F +TN Sbjct: 232 TDPI-FNKRPEQLSVQEFIELTN 253 >gi|151220668|ref|YP_001331490.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. Newman] gi|172048766|sp|A6QEE6|RSMA_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150373468|dbj|BAF66728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. Newman] Length = 297 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 14 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGIGSLTEQL-ARHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 73 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285 >gi|297591597|ref|ZP_06950234.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MN8] gi|297575466|gb|EFH94183.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MN8] gi|312436418|gb|ADQ75489.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH60] Length = 303 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 20 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 79 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 137 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 138 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYTETSK 194 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 195 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 254 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 255 FKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKL 291 >gi|257458323|ref|ZP_05623471.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580] gi|257444258|gb|EEV19353.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580] Length = 289 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N +L +L + +K GQNFL++ I +++ + G G +V E+G G G++T + Sbjct: 9 NAPSALAAVLDEHGFGMQKKFGQNFLINAYIRQELVSALGLSAGNSVWEVGPGLGSMTSL 68 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL GA V V E D+ F +L H +I+ D LK ++ ++ P N Sbjct: 69 LLETGA-DVTVFEIDRGFVQLLTSYFGPH-QSFHLIEGDVLKT-WKAEYDRQVPDAFFGN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI +L+ I + F+ + + QKEVG R+TA S Y SVL W Sbjct: 126 LPYNIAAKLIAATIETEC---FFNRMVITVQKEVGLRMTAAPGSADYSSFSVLCQWAYDV 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR 243 T + DI+P F+P P V S + FI +P P L + + FG RRKT++ +L Sbjct: 183 TPIRDIAPAAFWPKPNVESRALRFIKKRSPQPVRDARLFLTLVRGLFGARRKTVKNNLST 242 Query: 244 L---------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L E LL +A I+ RAE+L++ DF R+++I+ Sbjct: 243 LLAARGKKTPSAEALLKEASIDPVDRAESLTVYDFIRLSDIVA 285 >gi|227522373|ref|ZP_03952422.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290] gi|227090431|gb|EEI25743.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290] Length = 301 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y++ KK +GQNFL+DLNIL I E++ VIEIG G G LT+ L A Sbjct: 19 QAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAK-AA 77 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D++ P+L + S + N +EII D LK + K F P++++ANLP Sbjct: 78 NQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKVVANLP 136 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ + ++ P +ES+ ++ QKEV ER+ A+ + YG LSV+ + + Sbjct: 137 YYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQNDVDI 193 Query: 187 MFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + F P PKV S ++ P ++ P + + F +RKTL +L + Sbjct: 194 SFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWNNLLGV 253 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274 G+ +L I R E L +E F +TN Sbjct: 254 FGKQESVKGQIKKVLDDLSINAANRPEQLLVEQFVALTN 292 >gi|119470580|ref|ZP_01613283.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7] gi|119446281|gb|EAW27558.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7] Length = 268 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/269 (35%), Positives = 138/269 (51%), Gaps = 23/269 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ KI + ++EIG G G +T+ + L + V+E D Sbjct: 12 RKRFGQNFLFDEMIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTVVELD-- 68 Query: 82 FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 KD++ +HP +L + Q DA+K DF +++ NLPYNI T LLF Sbjct: 69 -----KDLAKRLIEHPFLGPKLTVNQGDAMKYDFASLVKDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + AD E + + QKEV +R+ A S +GRLSV+T + A + ++ P Sbjct: 124 HLFEFADNI----EHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPEC 179 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S VI IP P +S+K + EAF +RRKTLR SL L + Sbjct: 180 FKPAPKVDSAVIRLIPK-KPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEEMA 238 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 G++ LRAE+LS++ F I N + D + Sbjct: 239 SIGVDATLRAESLSLQQFIDIANWIYDKE 267 >gi|209693971|ref|YP_002261899.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238] gi|226729749|sp|B6EL48|RSMA_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|208007922|emb|CAQ78053.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238] Length = 277 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 137/265 (51%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKD 79 KK GQNFL D ++ I + L G ++EIG G G +T+ +G K VIE D Sbjct: 14 KKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITE---PVGREIDKFTVIELD 70 Query: 80 QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + L+ HP ++L I + DA++ DF + + +RI NLPYNI T L+F+ Sbjct: 71 RDLAARLR----THPELGSKLTIYEGDAMRFDFTQLIQEGNKLRIFGNLPYNISTPLMFH 126 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 127 LFE---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVMPVLEVPPTAFV 183 Query: 197 PSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ +P+ + P P L+ L ++ +E F +RRKT+R K L + L G Sbjct: 184 PPPKVDSAVVRLVPYEVLPFPAKNLKWLDRVCREGFNQRRKTVRNCFKALLTKEQLEALG 243 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 + + R ENL++E F + N L DN Sbjct: 244 VNPSHRPENLTLEQFVIMANWLNDN 268 >gi|169825672|ref|YP_001695830.1| dimethyladenosine transferase [Lysinibacillus sphaericus C3-41] gi|226732594|sp|B1HS82|RSMA_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|168990160|gb|ACA37700.1| Dimethyladenosine transferase [Lysinibacillus sphaericus C3-41] Length = 293 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL+ I + + IE+G G G LT+ L A Sbjct: 12 QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHAKLTENSGAIEVGPGIGALTEHL-ARSA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126 +KV+ E DQ+ P+L+D S + N + I+ D LK D K P I ++ANLP Sbjct: 71 KKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEMPGIEDIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L ++ D P ++ QKEV +RITA+ + YG LS+ + KA + Sbjct: 130 YYVTTPILMKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKADI 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKR 243 + VF P P V S VI I H P P + + L +T+ +F +RRKT+ +L+ Sbjct: 187 AMTVPKTVFMPQPNVDSAVIRLIKHDEP-PVKVINEDFLFVVTRASFVQRRKTIYNNLQA 245 Query: 244 LGGEN----------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G N L A IE R E L+I++F ++ + L Sbjct: 246 -GLPNGKTQKDFILEALAAANIEPTRRGETLTIQEFGKLADAL 287 >gi|255007603|ref|ZP_05279729.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12] gi|313145296|ref|ZP_07807489.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12] gi|313134063|gb|EFR51423.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12] Length = 280 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 136/257 (52%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KERLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ ++ F P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFG-GHPFALTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL +F +S HVF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYHVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C + K++ + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNEVQDLGCDPKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+++F +TN Sbjct: 237 NKRPEQLSVQEFIELTN 253 >gi|242023243|ref|XP_002432045.1| Dimethyladenosine transferase, putative [Pediculus humanus corporis] gi|212517403|gb|EEB19307.1| Dimethyladenosine transferase, putative [Pediculus humanus corporis] Length = 350 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 23/288 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ +L Y++ K + QNFLL+L I +I +++G + V E+G GPG +T+ +L Sbjct: 10 TIRELLKLYQVHALKRLSQNFLLNLRITDRIVKAAGKIKDGEVCEVGPGPGAITRSILMR 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 +KV+VIEKDQ+F P+L+++ + +II D + D K F +++ I Sbjct: 70 NPQKVVVIEKDQRFEPMLENLETSSYCDFKIIYADIMDYDLSKLFDESLKKNWNDVTPNI 129 Query: 120 RIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 +I NLP+N+ T L+ W++ + W +TL FQ+EV ERI S + RL Sbjct: 130 HLIGNLPFNVSTPLIVRWLNDISLRRNAWSLGRVKMTLTFQEEVAERIIGIPGSKNRCRL 189 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 SV+ + F I F P PKV V+HF P + P I E ++K+ + F R Sbjct: 190 SVMCQNWCDVHLKFKIPGTAFLPKPKVDVGVVHFEPLIEPFIKMDFEIVEKVLRIMFNYR 249 Query: 234 RKTLRQSLKRLGGENLLHQAGIE--------TNLRAENLSIEDFCRIT 273 +K +++ L + L + +E LR+ ++++D+ R+ Sbjct: 250 QKYCNRAVANLFPKELSDKLSVELFQRSELNPKLRSYQMTMDDWNRLC 297 >gi|49482720|ref|YP_039944.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257424604|ref|ZP_05601032.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427270|ref|ZP_05603671.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429907|ref|ZP_05606293.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 68-397] gi|257432610|ref|ZP_05608972.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus E1410] gi|257435514|ref|ZP_05611564.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M876] gi|282903078|ref|ZP_06310970.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C160] gi|282904868|ref|ZP_06312728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282913320|ref|ZP_06321111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M899] gi|282918274|ref|ZP_06326014.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C427] gi|282923025|ref|ZP_06330711.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C101] gi|283957282|ref|ZP_06374740.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500369|ref|ZP_06666221.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 58-424] gi|293509307|ref|ZP_06668023.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M809] gi|293515896|ref|ZP_06670586.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M1015] gi|295427027|ref|ZP_06819664.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|62900528|sp|Q6GJH8|RSMA_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49240849|emb|CAG39516.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272631|gb|EEV04751.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275921|gb|EEV07389.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279423|gb|EEV10018.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 68-397] gi|257282475|gb|EEV12608.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus E1410] gi|257285151|gb|EEV15268.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M876] gi|282314544|gb|EFB44931.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C101] gi|282317840|gb|EFB48209.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C427] gi|282322791|gb|EFB53111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M899] gi|282331985|gb|EFB61494.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596504|gb|EFC01464.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C160] gi|283791206|gb|EFC30016.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus A017934/97] gi|290921304|gb|EFD98362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M1015] gi|291096329|gb|EFE26589.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 58-424] gi|291467852|gb|EFF10362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M809] gi|295129030|gb|EFG58659.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193854|gb|EFU24248.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus CGS00] Length = 297 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 14 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 73 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYTETSK 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 249 FKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKL 285 >gi|332531189|ref|ZP_08407102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Hylemonella gracilis ATCC 19624] gi|332039296|gb|EGI75709.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Hylemonella gracilis ATCC 19624] Length = 254 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 136/258 (52%), Gaps = 21/258 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I+ I + G G V+EIG G +TQ L+ LG ++ VI Sbjct: 2 KHIPRKRFGQHFLADDGIIDAIVRAIGPQPGQCVVEIGPGLAAMTQPLVERLG--RMTVI 59 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLF 135 E D+ L+ +HP LE+I+ D LKVDF ++ +R++ NLPYNI T +LF Sbjct: 60 ELDRDLAARLR----KHPQ-LEVIESDVLKVDFSALAALARQKLRVVGNLPYNISTPILF 114 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + QKEV +R+ AQ ++ Y RLSV+ WR + + + P F Sbjct: 115 HLLEHVEA---VEDQHFMLQKEVVDRMVAQPSTADYSRLSVMLQWRYEMEDVLFVPPESF 171 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S V+ +P P+ L+++ Q AF +RRK LR +L R L + G+ Sbjct: 172 DPPPRVDSAVVRMVPRSAPVALNARLLEEMVQVAFSQRRKLLRHTLGR-----WLEEKGV 226 Query: 256 ----ETNLRAENLSIEDF 269 + RAE + + ++ Sbjct: 227 ADPFDLQRRAEEVPVSEY 244 >gi|255283478|ref|ZP_05348033.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469] gi|255265935|gb|EET59140.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469] Length = 298 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 24/281 (8%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++ Y+ +K GQNFL+D ++L KI ++ V+EIG G G +TQ L + A Sbjct: 12 AVIQKYEFAFQKKFGQNFLIDGHVLDKIIAAADITKEDFVLEIGPGIGTMTQYL-SEAAG 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128 +V+ +E D+ PIL + + + N +EI+ +D LKVD N PI+++ANLPY Sbjct: 71 RVLAVEIDKMLIPILHETLAGYEN-VEILNEDILKVDIAALVEEKNGGKPIKVVANLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + +S+T++ QKEV +R+ AQ S YG LS+ + + + Sbjct: 130 ITTPIIMGLLEQHVP---VKSITVMVQKEVAQRMQAQPGSKDYGALSLAVQYYCEPYIAA 186 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL---- 241 ++ P+ F P PKV S VI H P P E K + + +F +RRKTL L Sbjct: 187 NVPPNCFIPRPKVGSAVIRLTAHREP-PVKTEHEKLMFALIRASFNQRRKTLANGLSNAP 245 Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + G + + G+ +R E L++E F ++ NIL Sbjct: 246 ELTFTKEEITGA--IEKLGVPAGVRGETLALEQFAQLANIL 284 >gi|227432115|ref|ZP_03914127.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352142|gb|EEJ42356.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 303 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 152/284 (53%), Gaps = 23/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + KK GQNFL DLN+L I E++ VIEIG G G LT+ L A Sbjct: 22 QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQ-LARSA 80 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E D Q +L D + N +++I++D LKVD K F ++ ++I+ANLP Sbjct: 81 KKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKIISEEFGDNAHVKIVANLP 139 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + ++ W+++ ++ Q+EV +R+ A + YG L++ + +AT+ Sbjct: 140 YYITTPILIQLLRSNI---NWDNIVVMMQREVADRLNAAVGTKSYGVLTLTIQYFAQATL 196 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKR 243 + F PSP V S V+ P L P +E++ K + + +F RRK+L ++ + Sbjct: 197 AIKVPASSFNPSPNVDSAVVKLTP-LKP-TTIVENVGKLFGVIKGSFSHRRKSLWNNMLQ 254 Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ L A I+ +RAE L++E F ++ +L D Sbjct: 255 TYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLVLRD 298 >gi|91216107|ref|ZP_01253075.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755] gi|91185624|gb|EAS71999.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755] Length = 288 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/272 (35%), Positives = 145/272 (53%), Gaps = 15/272 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ KK++GQ+FL+D +I K+IAE+ + +V+EIG G G LT+ LL ++ + ++ Sbjct: 24 EVKAKKHLGQHFLIDEDISKRIAETLQKDNYSSVLEIGPGMGVLTKYLLGKYSQ-FVAMD 82 Query: 78 KDQQFFPIL-KDISSQH-----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D++ L +H L +I+ D LKVD +F + II N PYNI T Sbjct: 83 LDRESIAFLNSSFKKEHHIEEDSKALTVIEADFLKVDLSDYFR-DTQFAIIGNFPYNIST 141 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F + P + +FQKEV +RI A + S YG LSVL KA +F + Sbjct: 142 QIVFKTLEYKEQIP---EFSGMFQKEVAQRICASEGSKTYGILSVLVQAFYKAEYLFTVP 198 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P F P PK+ S V+ N +PC + L+ + + AF +RRKTLR SLK+ L Sbjct: 199 PEAFDPPPKIHSGVLRLQRKENYELPCEEKKLRDVVKTAFQQRRKTLRNSLKKFNLSPEL 258 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + I T R E LS+E F +T L +QD+ Sbjct: 259 REDPIFTK-RPEQLSVEQFIDLT--LKISQDV 287 >gi|59710893|ref|YP_203669.1| dimethyladenosine transferase [Vibrio fischeri ES114] gi|197334233|ref|YP_002155045.1| dimethyladenosine transferase [Vibrio fischeri MJ11] gi|62900449|sp|Q5E865|RSMA_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732638|sp|B5FGG5|RSMA_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|59478994|gb|AAW84781.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Vibrio fischeri ES114] gi|197315723|gb|ACH65170.1| dimethyladenosine transferase [Vibrio fischeri MJ11] Length = 272 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ I + L G ++EIG G G +T+ + K VIE D+ Sbjct: 14 RKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 72 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 73 LAERLRN----HPELGSKLTIHEGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHLF 128 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 129 E---FHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPTAFVPP 185 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L+ L ++ +E F +RRKT+R K L + L + GI Sbjct: 186 PKVDSAVVRLVPYETLPYPATNLKWLDRVCREGFNQRRKTVRNCYKALLTKEQLEELGIN 245 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 ++R ENL++E F + N L N Sbjct: 246 PSMRPENLTLEQFVNMANWLDANH 269 >gi|198282486|ref|YP_002218807.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|226729745|sp|B5EL84|RSMA_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|198247007|gb|ACH82600.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 268 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 134/256 (52%), Gaps = 10/256 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+ I+++I + G ++EIG GPG LT+ LL L + V+E D+ Sbjct: 11 KKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRL-LPQFTVVELDRD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ P +L ++Q DAL+VDF + +RI+ NLPYN+ T L+F+ + Sbjct: 70 MIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILEHA 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV +R+ A S YGRLSV+ +F ++P FFP PKV Sbjct: 128 EQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVPKV 184 Query: 202 TSTVIHFIPHLNP--IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S + IPH P +P L++ +I +F +RRKTL +L+ + + L I+ Sbjct: 185 DSAFMRLIPH-RPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDPG 243 Query: 259 LRAENLSIEDFCRITN 274 RAE L F R+ Sbjct: 244 SRAETLDQAAFFRLAE 259 >gi|156358457|ref|XP_001624535.1| predicted protein [Nematostella vectensis] gi|156211322|gb|EDO32435.1| predicted protein [Nematostella vectensis] Length = 325 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 142/279 (50%), Gaps = 23/279 (8%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y + +K QNF+LDLNI KIA+ S D V E+GAGPG+LT+ +L GAR Sbjct: 14 LLRLYGLTAQKQFSQNFILDLNITDKIAKVSDVFD-CYVCEVGAGPGSLTRSILNAGARH 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----------IRII 122 V +E D++F P L+ + R+ + D +K + F +SP +R++ Sbjct: 73 VAAVEIDRRFLPSLQLLEDAAKGRMTLHHADIMKFNIPSAFPRASPTGWESGDIPGVRMV 132 Query: 123 ANLPYNIGTRLLFNWISA--DTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 NLP+ + LL W+ A + PF + L+FQKEV E I A + S + RL+V+ Sbjct: 133 GNLPFGVSIPLLLQWLEAIPERSGPFAFGRTPMALVFQKEVAENIVASEGSYNRSRLAVM 192 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKT 236 + +A + + VF P PKV ++++ P + P I ++++ + F RRK Sbjct: 193 VQYLCEAKRRYSLPSSVFVPKPKVDASLVVLTPRVTPLIDAPFIVVEQVVKAVFAMRRKF 252 Query: 237 LRQSLKRL--GGE----NLLHQAGIETNLRAENLSIEDF 269 + LK + G E +LL + + RA L++ +F Sbjct: 253 IHTPLKLMFPGKEELVGDLLRLSSVNPEQRAHELAMTEF 291 >gi|260773617|ref|ZP_05882533.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14] gi|260612756|gb|EEX37959.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14] Length = 271 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 136/260 (52%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + L G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELSSKLTIHEGDAMRFDFQQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHKE---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L+ L ++ +E F +RRKT+R K L + Q I+ Sbjct: 184 PKVDSAVVRLLPYEELPHPATSLKWLDRVVREGFNQRRKTVRNCYKGLLDDETFAQLAID 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 + +R ENL+++ F + N L Sbjct: 244 STMRPENLTLQQFVSMANWL 263 >gi|218666666|ref|YP_002424676.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|254807853|sp|B7J3R3|RSMA_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218518879|gb|ACK79465.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 267 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 130/255 (50%), Gaps = 8/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+ I+++I + G ++EIG GPG LT+ LL L + V+E D+ Sbjct: 10 KKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRL-LPQFTVVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ P +L ++Q DAL+VDF + +RI+ NLPYN+ T L+F+ + Sbjct: 69 MIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILEHA 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV +R+ A S YGRLSV+ +F ++P FFP PKV Sbjct: 127 EQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVPKV 183 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S + IPH + P +I +F +RRKTL +L+ + + L I+ Sbjct: 184 DSAFMRLIPHRPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDPGS 243 Query: 260 RAENLSIEDFCRITN 274 RAE L F R+ Sbjct: 244 RAETLDQAAFFRLAE 258 >gi|297537784|ref|YP_003673553.1| dimethyladenosine transferase [Methylotenera sp. 301] gi|297257131|gb|ADI28976.1| dimethyladenosine transferase [Methylotenera sp. 301] Length = 259 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/272 (34%), Positives = 144/272 (52%), Gaps = 26/272 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K I KK GQNFL D ++ + ++ ++EIG G G LT+ LL L V+ + Sbjct: 2 KHIAKKRFGQNFLTDQGVISSLVDAISPKADDLMVEIGPGLGALTKPLLQRLKLLHVVEV 61 Query: 77 EKDQQFFPILKDISSQHPNR------LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++D I+ + +++ R + I DALK DF+ ++ +R+ NLPYNI Sbjct: 62 DRD-----IIAWMQAEYGKRAYASSAISIHNADALKFDFK---SLGDNLRVTGNLPYNIS 113 Query: 131 TRLLFNW---ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 T +LF+ +SA T + + QKEV ER+ A ++ YGRLSV+ +R + + Sbjct: 114 TPILFHLLDNVSAIT------DMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMDYL 167 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG 245 + P F P+PKV S + +PH + P E++ K+ AFG+RRKTLR +LK L Sbjct: 168 ITVPPEAFEPAPKVESAFVRCVPHAVLPFVAKDEAIFAKVVLAAFGQRRKTLRNTLKELL 227 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + I++ RAENL++ DF I N L+ Sbjct: 228 NDEGFTALNIDSQQRAENLAVSDFVAIANYLS 259 >gi|320179612|gb|EFW54561.1| Dimethyladenosine transferase [Shigella boydii ATCC 9905] gi|333010543|gb|EGK29976.1| dimethyladenosine transferase [Shigella flexneri VA-6] Length = 249 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 18/240 (7%) Query: 48 GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102 G ++EIG G LT+ +G R ++ VIE D+ L+ HP +L I Q Sbjct: 14 GQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQ 66 Query: 103 DALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 DA+ +F + + P+R+ NLPYNI T L+F+ S + + + QKEV R Sbjct: 67 DAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNR 123 Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-L 219 + A NS YGRLSV+ + + ++ P F P PKV S V+ +PH P P + Sbjct: 124 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 183 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L +IT EAF +RRKT+R SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 184 RVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 243 >gi|289423351|ref|ZP_06425159.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L] gi|289156282|gb|EFD04939.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L] Length = 293 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 141/265 (53%), Gaps = 16/265 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL+D NI+ KI + S + G VIE+G G G LT+ L + + KV+V+E D++ Sbjct: 24 KSLGQNFLIDDNIIDKIVDGSLAGQGDKVIEVGPGIGTLTRELAS-RSEKVMVVEIDKKL 82 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWIS 139 PIL D S N + I+ +D +K D + + + P++++ANLPY I T ++ ++ Sbjct: 83 IPILGDTLSDFDN-VTIVNEDIMKADIKDLIDKNLDGGPVKLVANLPYYITTPIIMRFLE 141 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + ++ QKEV ER+ A +G LSV + ++ + H+F P P Sbjct: 142 EDIN---VTDIVVMVQKEVAERMNANPGKKDFGALSVAVQFYCDTEIVAKVPRHLFVPQP 198 Query: 200 KVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN------LLH 251 V S VI P + KI + +FG+RRKTL SL +G + +L Sbjct: 199 NVDSIVIALRVRPERKYKVEDEDLFFKIVKASFGQRRKTLLNSLTSMGILDKTDISAVLS 258 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 AGI+ R E LS+E+F R+++ + Sbjct: 259 VAGIDEKRRGETLSLEEFARLSDCM 283 >gi|125718907|ref|YP_001036040.1| dimethyladenosine transferase [Streptococcus sanguinis SK36] gi|166221709|sp|A3CQN5|RSMA_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|125498824|gb|ABN45490.1| Dimethyladenosine transferase, putative [Streptococcus sanguinis SK36] Length = 290 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 146/281 (51%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFLAE-SA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126 +V+ E D + PIL D N + ++ D LKV+ ++ N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I ++ PF E ++ Q+EV +RI+AQ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 185 AFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRKTLWNNLTSY 244 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G++ L +A + ++R E LS+E+F + + L Sbjct: 245 FGKSEETKGKLTAALERAELSPSVRGEALSLEEFACLADAL 285 >gi|167626494|ref|YP_001676994.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189028809|sp|B0TZ54|RSMA_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|167596495|gb|ABZ86493.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 262 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/265 (35%), Positives = 139/265 (52%), Gaps = 9/265 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ +L + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILKC-SDNVNV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134 +E D L + Q ++ +D LK D + + +++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLLQ-NCQKYGEPKVFNEDFLKFDLDIVRADSQQKLKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI +Q NS YGRLSV+ + +M+ +I P V Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLL--H 251 F+P PKV S ++ P N + + I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKANKLVINDYIFFENIVKQSFAQRRKTLHNNLKGILKELDIDPN 236 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 ++T LRAENLS+EDF + N L Sbjct: 237 TLPVDTKLRAENLSMEDFVSLVNFL 261 >gi|220927630|ref|YP_002504539.1| dimethyladenosine transferase [Clostridium cellulolyticum H10] gi|219997958|gb|ACL74559.1| dimethyladenosine transferase [Clostridium cellulolyticum H10] Length = 290 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 25/292 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NN S I+ +++ K +GQNFL D +++K+I ++S IEIG G G+ Sbjct: 1 MIKNNTSE----IIKKHRLKLTKALGQNFLTDFSVVKRIVDASDIDKDTLAIEIGPGVGS 56 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115 +T+ L A V IE D++ P L D S + N + II +D +K D + N Sbjct: 57 MTRELAARSA-GVAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDTIINKYREVY 114 Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 + ++++ANLPY I T ++ ++ + + + Q+EV ER+ + + YG L Sbjct: 115 NAKSVKVVANLPYYITTPIIMRFLEEVKG---VDKMVFMVQREVAERMVSGPGTKDYGAL 171 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGK 232 SV + +K ++FD+ PH F P P+V ST+I I P+ +L KI + +FG+ Sbjct: 172 SVAVQFYSKPEIIFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVIDRNLYFKIVKASFGQ 231 Query: 233 RRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKTL +L G N +L + G N+R E L++ F +++N++ Sbjct: 232 RRKTLVNALSNSGFFNKTKEQIKQILKEMGKSENIRGEVLTVAQFAQLSNLM 283 >gi|78046456|ref|YP_362631.1| dimethyladenosine transferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|119365862|sp|Q3BX82|RSMA_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78034886|emb|CAJ22531.1| Dimethyladenosine transferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 262 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T LL GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRRHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L ++++ L II D L VDF N +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTEVAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ + T +F + P Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 235 DAAQVRPDARAEQLEVADFIRLANV 259 >gi|126643017|ref|YP_001086001.1| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC 17978] Length = 187 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 5/184 (2%) Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 HP RL I++ DALK DF + P+R++ NLPYNI T LLF+ + + + + Sbjct: 3 HPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLEFGSQ---VKDMHF 59 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH- 211 + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P PKVTS V +P+ Sbjct: 60 MLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKVTSAVFRLVPYE 119 Query: 212 LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFC 270 PI E +L ++ F +RRKTLR SLK + E+ +AG++ R E L++ +F Sbjct: 120 QKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMARPETLTLAEFV 179 Query: 271 RITN 274 + + Sbjct: 180 ALAD 183 >gi|261209782|ref|ZP_05924087.1| dimethyladenosine transferase [Vibrio sp. RC341] gi|260841172|gb|EEX67685.1| dimethyladenosine transferase [Vibrio sp. RC341] Length = 271 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 133/260 (51%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L GI Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLECLDRVVREGFNQRRKTVRNCYKGLAEPETLEALGIN 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 +R ENL++ F + N L Sbjct: 244 PGMRPENLTLAQFVALANWL 263 >gi|170043732|ref|XP_001849529.1| mitochondrial dimethyladenosine transferase 1 [Culex quinquefasciatus] gi|167867055|gb|EDS30438.1| mitochondrial dimethyladenosine transferase 1 [Culex quinquefasciatus] Length = 345 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 148/291 (50%), Gaps = 25/291 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ ++ YK+ K + QNFL+D + KI +++G++ V+E+G GPG++T+ ++ Sbjct: 22 TIRDLVRLYKLRAIKQLSQNFLMDERLTNKIVKAAGNITDHHVLEVGPGPGSITRSIIRK 81 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFF---------NISS 117 R ++V+EKD++F P L+ +S R++I++ D L+ E+ F + + Sbjct: 82 APRHLVVVEKDRRFLPTLELLSEASAGFLRMDIVRGDILQFQTEQAFPDCPRQEWHDKRA 141 Query: 118 PIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 P+ II NLP+ I TRLL NW+ + W SLTL FQKEV ERI A S Sbjct: 142 PVHIIGNLPFAISTRLLINWLHEMSTRSGAWSFGRSSLTLTFQKEVAERIVAPILSERRC 201 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFG 231 RLSV+ ++ + F I F P P V V+ +P NP+ ++K+ + F Sbjct: 202 RLSVMNQIWSRPELKFIIPGKAFVPKPDVDVGVVTIVPLKNPLTTVPFPVVEKVVRHIFS 261 Query: 232 KRRKTLRQSLKRLGGENLLHQ--------AGIETNLRAENLSIEDFCRITN 274 R+K R+ + L L + A ++ R+ LS E+ RI Sbjct: 262 MRQKYCRRGVANLYPPELRDELTELTFKIADVDPLARSFQLSTEECLRIVE 312 >gi|322419457|ref|YP_004198680.1| dimethyladenosine transferase [Geobacter sp. M18] gi|320125844|gb|ADW13404.1| dimethyladenosine transferase [Geobacter sp. M18] Length = 277 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 143/278 (51%), Gaps = 17/278 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I KK GQNFL+D N+L +I ++E+G G G L+++L GAR + +E Sbjct: 5 RIKAKKEFGQNFLVDDNVLTRIVSCVAPGTEDCILEVGPGRGALSRLLAASGAR-FVAVE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGTRLL 134 D+ P L + + +R+EI D L+VD + +P R + ANLPYNI +++L Sbjct: 64 WDRDLIPFLNSEFAGN-DRVEIGHGDILRVDLHQILTTRAPGRKWKVAANLPYNISSQVL 122 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F ++ +E L L+ QKEVG+R+TA YG L+VL F + P Sbjct: 123 FKFMED---CDLFEGLVLMLQKEVGDRLTAPPGCKDYGALTVLLRLHFDIRREFIVKPGS 179 Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ F P P + E L +++ + AF +RRKTL SL+ G ++ Sbjct: 180 FRPIPKVDSAVLSFTPLPAPRVEVGDEELFRRLVKGAFNQRRKTLLNSLRSAGFDDSDGS 239 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L + I+ R E LS+E+F ++ L + +A Sbjct: 240 LSAALSRCNIDGLRRGETLSLEEFAALSRDLYPGKSLA 277 >gi|126311223|ref|XP_001381331.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 344 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 23/290 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ + + +K + QNFLLDL + KI +G L V E+G GPG T+ +L Sbjct: 17 TVGEIIKLFGLRAQKQLSQNFLLDLRLTDKIVRKTGDLKNAHVYEVGPGPGAFTRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 ++V+EKD +F P L+ +S P +L I+ D L E+ F + + Sbjct: 77 QVADLLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERMFPEHLKRRWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W IS P + +TL FQKEV ER+TA + RL Sbjct: 137 YIIGNLPFSVSTPLIIKWLENISKRDGPFVYGRTQMTLTFQKEVAERLTAGTGNKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + K F I F P P+V V+HF P + P I + ++K+ Q F R Sbjct: 197 SIMAQYLCKVDNSFIIPGRAFVPKPEVDVGVVHFTPLVQPQINQPFKLVEKVVQSTFQFR 256 Query: 234 RKTLR--------QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 RK Q+ + E +L A ++ LR LSI F + ++ Sbjct: 257 RKYCHHGIGILFPQAERSKNTEKMLMLADVDPTLRPSQLSILHFKNLCDV 306 >gi|256820807|ref|YP_003142086.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271] gi|256582390|gb|ACU93525.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271] Length = 257 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 142/260 (54%), Gaps = 12/260 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL DLNI +KIA++ + V+EIGAG G LTQ LL G V ++E D++ Sbjct: 7 KKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKGV-DVHIVEIDKE 65 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + +P R +II DD LK D + ++ P II N PYNI T+++F + Sbjct: 66 SVDYLE---ANYPALRGKIIADDFLKYDVAGY--LAEPFAIIGNFPYNISTQIVFKLLEL 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + +FQKEV ERI + S YG LSVL + + +F +S VF P PK Sbjct: 121 REY---VSEFSGMFQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPPPK 177 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + C E L + + AF +RRKTLR SLK L + L Q I + Sbjct: 178 VKSGVIRLVRKAHFHLDCDERLFFTVVKTAFNQRRKTLRNSLKPLLTDENLKQDPI-FDK 236 Query: 260 RAENLSIEDFCRITNILTDN 279 R E L ++F IT +++ Sbjct: 237 RPEQLPWQEFVFITKKISNQ 256 >gi|237804701|ref|YP_002888855.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273001|emb|CAX09913.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT] Length = 277 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 140/265 (52%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK + QNFL+D NIL+KI ++ G V+EIG G G L+++LL+ GA VI +EKD Sbjct: 21 KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 P+ ++ SQ P +EI DA K + RI+ANLPY+I T LL + Sbjct: 78 --PMFEESLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P W+++T++ Q EV RITA+ Y L+V + F +SP+ F+P P Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYSSLTVFLSFFADVQYAFKVSPNCFYPKP 191 Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253 V S V+H H +E +T+ AFG+RRK L SLK L ++ +L Q Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G R E + +E++ +I ++L D Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|51894384|ref|YP_077075.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM 14863] gi|62900510|sp|Q67JB9|RSMA_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51858073|dbj|BAD42231.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM 14863] Length = 285 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 141/278 (50%), Gaps = 14/278 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +LK +++ Y + P+ +GQNFL+D +L I ++G V+EIG G G LTQ L Sbjct: 8 ALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAAK 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIAN 124 R V+ +E D+ +L D + + +E+I DA ++D K +++AN Sbjct: 68 AGR-VVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLHKLLGERLAPGQKAKVVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T L+ + + P + ++ QKEV +R+ + S YG LSV + T+ Sbjct: 127 LPYYITTPLVMRLLE-EELP--LSHVVVMVQKEVADRMVSPPGSKAYGALSVAVQYYTEP 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ +S F P P+V S V+ P+ E+ ++ + AFG+RRK+L +L Sbjct: 184 RIVLRVSRASFMPQPEVDSAVVSLRYRERPPVDAPPEAFFRVVRAAFGQRRKSLVNALTS 243 Query: 244 LGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276 LG E L AGI+ R E+LS+E+F + L Sbjct: 244 LGVEKAAVHAALEAAGIDPGRRGESLSLEEFAAVARTL 281 >gi|315223958|ref|ZP_07865802.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287] gi|314946062|gb|EFS98067.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287] Length = 257 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/260 (37%), Positives = 142/260 (54%), Gaps = 12/260 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL DLNI +KIA++ + V+EIGAG G LTQ LL V ++E D++ Sbjct: 7 KKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKDV-DVHIVEIDKE 65 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + +P R +II +D LK D + ++ P II N PYNI T+++F + Sbjct: 66 SVAYLE---ANYPALRGKIIANDFLKYDVAGY--LAEPFAIIGNFPYNISTQIVFKLLEL 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + P + +FQKEV ERI + S YG LSVL + + +F +S VF P PK Sbjct: 121 REYVP---EFSGMFQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPPPK 177 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + C E L + + AF +RRKTLR SLK L + L Q I + Sbjct: 178 VKSGVIRLVRKTDFHLDCDEGLFFTVVKTAFNQRRKTLRNSLKSLLTDENLKQDPI-FDK 236 Query: 260 RAENLSIEDFCRITNILTDN 279 R E L ++F IT +++ Sbjct: 237 RPEQLPWQEFVFITKKISNQ 256 >gi|313905501|ref|ZP_07838865.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6] gi|313469685|gb|EFR65023.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6] Length = 299 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 19/286 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N +++++ IL Y +K GQNFL+D ++L+KI ++ + V+EIG G G LT Sbjct: 14 LGNPANTIE-ILQKYGFRFQKKFGQNFLIDPHVLEKIVRAADISEDDCVMEIGPGIGTLT 72 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L AR+V +E D+ PIL + + + + + +I +D LKVD ++ N P+ Sbjct: 73 QYLARY-AREVFAVEIDKNLIPILTEDTLKDWDNVTVINEDCLKVDMKQLVEEHNGGKPV 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T +L + PF ES+T++ QKEV +R+ A S YG LS+ Sbjct: 132 KVVANLPYYITTPILMELLEKHV--PF-ESITVMVQKEVADRMQAGPGSKDYGALSLAVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLK-KITQEAFGKRRKT 236 + T +M ++ P+ F P P V S VI N + E L ++ + +F +RRKT Sbjct: 189 YYTVPEIMANVPPNCFIPRPNVGSAVIRLKGRTEENRVQVQDEHLMFRLIRASFAQRRKT 248 Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 L L+ + E ++ G+ +R E L++E F ++ + Sbjct: 249 LMNGLRNSQELDFSKEEIEKVIQDCGLPAAVRGEALTLEQFAQLAD 294 >gi|260893941|ref|YP_003240038.1| dimethyladenosine transferase [Ammonifex degensii KC4] gi|260866082|gb|ACX53188.1| dimethyladenosine transferase [Ammonifex degensii KC4] Length = 297 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 152/285 (53%), Gaps = 21/285 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++K +L+ + I P+K GQ+FL+ +L KI E++ TV+E+G G G LT LL Sbjct: 13 AVKAVLAEWGIKPRKRWGQHFLVRREVLAKIVEAAELSPADTVVEVGPGLGVLTARLLE- 71 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANL 125 A KV+ IE D + L+ +HP RL +++ DAL+ DF+ + P +++ANL Sbjct: 72 KAGKVVAIELDPRLEAFLRARFGEHP-RLTLVRGDALECDFDLLVQEARGFFPYKVVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWE--SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 PY + + LL +++ W L L+ QKEV R+ A + YG LS+L +RT Sbjct: 131 PYYLTSPLLLRLLTSP-----WRISLLVLMLQKEVALRLLASPGTKEYGSLSLLVQYRTL 185 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSL 241 +++ +S H F+P P+V S V+ P + ES+ + + AF KRRKTL +L Sbjct: 186 PSLVTFVSRHSFYPPPEVDSAVVRLEVRTRPSVEVGDESVFFGVVRAAFAKRRKTLLNAL 245 Query: 242 --KRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 LG + LL AGI+ R E LS+E+F RI L N Sbjct: 246 TSSSLGLSKEEWQRLLLDAGIDPGRRGETLSLEEFARIARRLQSN 290 >gi|296329543|ref|ZP_06872029.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672740|ref|YP_003864411.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153286|gb|EFG94149.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410983|gb|ADM36101.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 292 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 22/280 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + + + VIEIG G G LT+ + A Sbjct: 12 KEILKKYCFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV+ E DQ+ PILKD S + N + +I D LK D E+ F I ++ANLP Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + P + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 130 YYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTL------ 237 + + VF P P V S VI I P +E+ ++ + +F +RRKTL Sbjct: 187 VMTVPKTVFVPQPNVDSAVIRLILRDGP-AVDVENEAFFFQLIKASFAQRRKTLLNNLVN 245 Query: 238 ---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 ++ E +L + I+ R E+LSIE+F ++N Sbjct: 246 NLPEGKAQKSTIEQVLEKTNIDGKRRGESLSIEEFAALSN 285 >gi|323493620|ref|ZP_08098741.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio brasiliensis LMG 20546] gi|323312143|gb|EGA65286.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio brasiliensis LMG 20546] Length = 268 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ N P P L+ L ++ +E F +RRKT+R K L L + G+ Sbjct: 184 PKVDSAVVRLVPYENLPHPATSLKWLDRVCREGFNQRRKTVRNCYKALLSTETLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 +R ENL++E F + N L N Sbjct: 244 PGMRPENLTLEQFVAMANWLDANH 267 >gi|323438725|gb|EGA96465.1| dimethyladenosine transferase [Staphylococcus aureus O11] gi|323442063|gb|EGA99698.1| dimethyladenosine transferase [Staphylococcus aureus O46] Length = 303 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L A Sbjct: 20 RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 ++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ANLP Sbjct: 79 KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 137 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L N + D P + ++ QKEVGER+ A+ S YG LS++ + T+ + Sbjct: 138 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 194 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + + Sbjct: 195 VLTVPKSVFMPPPNVDSIVVKQMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 254 Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272 + H QAGI+ R E LSI+DF ++ Sbjct: 255 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 291 >gi|297566999|ref|YP_003685971.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946] gi|296851448|gb|ADH64463.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946] Length = 276 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 142/277 (51%), Gaps = 18/277 (6%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 S +++ +L Y + K GQNFL++ L++I + G G V E+G G G LT+ Sbjct: 11 TSSRAVRELLERYGLRADKRFGQNFLVEAGYLQRIVAAVGFKPGERVYEVGPGLGTLTRA 70 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 L GA KV +E D++ P+ + + P +E+I DAL+ D+ +I N Sbjct: 71 LAEAGA-KVTAVEMDRRLEPVHAETLAHLP--VEVIWGDALEFDWR---SIPPGSLFAGN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI T L+ + + + + +L QKEV R+ A +P YG LS+ ++A Sbjct: 125 LPYNIATPLITKLLLSRRF----RCIVVLVQKEVALRMVAAPGTPEYGVLSLRIQHHSQA 180 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 +FD+ P VF P PKVTS+++ P+ NP L ++ + AF +RRKTL +LK Sbjct: 181 RRLFDLPPGVFLPPPKVTSSLVRLEPNANPDD---PELFRLIEAAFAQRRKTLSNALKAA 237 Query: 245 -----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L Q G+ +R E LS+E F + ++L Sbjct: 238 EYPPQAVTAALVQMGLPPQIRGEALSLEQFRTLHSLL 274 >gi|81429267|ref|YP_396268.1| dimethyladenosine transferase [Lactobacillus sakei subsp. sakei 23K] gi|119365029|sp|Q38V22|RSMA_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78610910|emb|CAI55962.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus sakei subsp. sakei 23K] Length = 297 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 20/284 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL ++ ILK+I E+ VIEIG G G+LT+ + A Sbjct: 11 KKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQI-ARKA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + P+LKD + H + + ++ D L+ D K F+ ++I+ANLP Sbjct: 70 HQVLSFEIDDRLIPVLKD-TLNHYHNVTVLNQDILEADLPTLIAKHFDGQHNLKIVANLP 128 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ + + A P + + L+ QKEV ERI A S YG LS+ ++ + Sbjct: 129 YYITTPIMLHLLEAGL--PI-DRMVLMMQKEVAERIDAAPGSKAYGSLSIAVQLHSEVKL 185 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + F P P V S ++ F+ P+ ++ + AF +RRKTL +L+ Sbjct: 186 AFIVPKTAFVPQPNVDSAIVEFVGRQEPLVTVQNQQLFDQLVRGAFAQRRKTLWNNLQNQ 245 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G+ L QA I + RAE LSI+ F ++++ L + Sbjct: 246 FGKQEEVKAGLVAALDQADIAPSTRAEQLSIQQFAQLSDCLNEQ 289 >gi|260775525|ref|ZP_05884422.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450] gi|260608706|gb|EEX34871.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450] Length = 268 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ HP +L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLR----THPELAEKLTIHEGDAMRFDFTQLVKPNNRLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 E---YHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L L ++ ++ F +RRKT+R K L +L Q GI Sbjct: 184 PKVDSAVVRLVPYETLPYPATSLNWLDRVCRDGFNQRRKTVRNCYKSLVNAEILEQLGIN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 +R ENL++E F + N L N Sbjct: 244 PGMRPENLTLEQFVDLANWLDANH 267 >gi|332140204|ref|YP_004425942.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550226|gb|AEA96944.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 275 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 138/277 (49%), Gaps = 22/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT L H +K GQNFL D ++ KI + + ++EIG G G LT + Sbjct: 3 KTHLGHTA---RKRFGQNFLHDDYVIGKIVAAIAPKNEQNLVEIGPGLGALTDPVCE-EV 58 Query: 71 RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN----ISSPIRIIA 123 + VIE D+ L+ HP +L +I+ DA+ +DF +R+ Sbjct: 59 DALTVIELDRDLAKRLR----HHPFNGEKLTVIEQDAMTMDFGALSKEMPLKDKKLRVFG 114 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYNI T L+F+ E + + QKEV R+ A S +YGRLSV+ + Sbjct: 115 NLPYNISTPLMFHLFDHAHC---IEDMHFMLQKEVVNRLAAGPGSKNYGRLSVMAQYYCH 171 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQS 240 + ++ P F P PKV S V+ +PH +P P + +L+++ +AF +RRKT+R S Sbjct: 172 VIPVLNVPPGAFKPPPKVDSAVVKLVPHQSP-PVDVVSVSTLERVCAQAFNQRRKTIRNS 230 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK E + + GI+ RAE LS+ DF I N ++ Sbjct: 231 LKDSLSEEEIRELGIDPTCRAEVLSLNDFATIANAVS 267 >gi|315651949|ref|ZP_07904951.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986] gi|315485778|gb|EFU76158.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986] Length = 297 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 143/283 (50%), Gaps = 22/283 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D ++L KI SG IEIG G G LTQ L + A+ Sbjct: 20 IIKKYDFNFQKKFGQNFLIDTHVLDKICSESGLGKNDLAIEIGPGIGALTQYL-AITAKA 78 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SPIRIIANL 125 V+ +E D+ PIL D + N E+I D LKVD EK + IRIIANL Sbjct: 79 VVAVEIDKNLLPILGDTLKDYKNT-ELINADFLKVDLEKLIDECIQKYGEFDNIRIIANL 137 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T ++ N + + T +S+T++ QKEV +R+ A S +YG LS+ + + Sbjct: 138 PYYITTPIIMNVLESHTH---IDSITVMIQKEVADRMQAAPGSKNYGALSLAVQYYSDPY 194 Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 ++ + + F P PKV S+VI I PI E L +I + F +RRKTL SL Sbjct: 195 VVAFVPQNCFIPRPKVGSSVIRLDIYKDKPIKTVNEKLMFQIIRAGFNQRRKTLVNSLIN 254 Query: 244 LGG-----ENLLHQ---AGIETNLRAENLSIEDFCRITNILTD 278 G ++H G +R E LS+++F ++ L + Sbjct: 255 FEGLQFSKNKIIHALSLLGKSEKIRGEALSLDEFAQLAEYLQE 297 >gi|154509599|ref|ZP_02045241.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC 17982] gi|153799233|gb|EDN81653.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC 17982] Length = 328 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 138/278 (49%), Gaps = 21/278 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I I P K +GQNF+ D ++KI + G G VIE+G G G+LT LL +G Sbjct: 37 VKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVIEVGPGLGSLTLALLEVG 96 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIA 123 AR V +E D L + S+ +RL ++ DA ++ F + +P +++A Sbjct: 97 AR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLVA 155 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L N + A P + + ++ Q EV +R+ A S YG SV W Sbjct: 156 NLPYNVAVPVLLNMLEAF---PSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYGS 212 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239 I VF+P P V S ++ L P + L++ T E AFG+RRKTLR Sbjct: 213 VERAGTIGRSVFWPVPGVDSALVRLT-RLE-TPRGDDELRRATFEATDVAFGQRRKTLRA 270 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 +LK G E LL AGI+ R E LSI++F + Sbjct: 271 ALKNWAGGPEASEALLSAAGIDPTRRGETLSIDEFVEL 308 >gi|256545786|ref|ZP_05473142.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170] gi|256398482|gb|EEU12103.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170] Length = 282 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 142/275 (51%), Gaps = 15/275 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++KTI Y K +GQNFL+D N + KI + S + G ++EIG G G ++Q + Sbjct: 8 KTIKTIQDLYGFKFSKSLGQNFLVDKNFVDKIIDLS-EVKGENILEIGPGIGTISQEMAK 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIA 123 +K++VIE D+ PIL D + N +EII D LK D +K F+ ++++ Sbjct: 67 -TCKKLVVIEIDKTLIPILNDNLGEFSN-VEIINADILKTDLKKIAKEKFD-GEDFKVVS 123 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I T ++ D + +T++ QKEV +R+ A + S Y LSV + + Sbjct: 124 NLPYYITTPIIEKLFEEDLS---CKDMTIMVQKEVADRMKADEKSKDYSSLSVFIKYYAE 180 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 F + VF P PK+ S V+ L +L + + F KRRKT+ SL Sbjct: 181 IIGQFKVPKSVFMPQPKIDSQVLKLNLRLYDENVNTNTLFNVVRAGFNKRRKTILNSLSS 240 Query: 244 -LGGENL---LHQAGIETNLRAENLSIEDFCRITN 274 + ENL L ++ NLRAENLS++DF +I N Sbjct: 241 VIEKENLKEILENLSLKENLRAENLSLDDFIKIAN 275 >gi|196005549|ref|XP_002112641.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens] gi|190584682|gb|EDV24751.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens] Length = 319 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 152/297 (51%), Gaps = 25/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ ++ + + K + QNFLL+ NI KI G ++ V E+GAGPG LT+ ++ Sbjct: 9 TIRDLIKLHNLSASKQLSQNFLLNSNITNKIVLLDGGVENHQVCEVGAGPGCLTRSIIAG 68 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-I 119 GA K++ +EKD++F P L +++ R+ I+ D L + K F N SP + Sbjct: 69 GASKIVAVEKDRRFLPALDILANAVDGRMVIVYADILNYEMIKAFDPVDKKAWNDESPKM 128 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRL 174 +II NLP++I T LL W++ + PF +TL FQ+EV +RI A+ + RL Sbjct: 129 KIIGNLPFSISTPLLIQWLNLISQNAGPFSLGRIKMTLTFQEEVAQRILAEPKTSQRSRL 188 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++T F I F P+PKV S V+ F P + P I +L+ I + F R Sbjct: 189 SIMTQNYCHVKPGFLIKGSSFVPAPKVNSVVLTFTPRITPLIDIDFTTLEVIAKSLFRHR 248 Query: 234 RKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRIT----NILTDNQ 280 RK + + K L + L +A ++ LR + LS E+ R+ +L D+Q Sbjct: 249 RKFVIKGTKYLFPTDVDLSLKLFEEADVDWKLRPQQLSTEEIQRLCAAYKKVLLDHQ 305 >gi|303229693|ref|ZP_07316481.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a] gi|302515818|gb|EFL57772.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a] Length = 284 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I +++ +G V+EIG G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGA-N 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D + +L +Q+ N + I+ D LK+D N + P +++ANLPY I T Sbjct: 74 VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMN-NEPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + P E L ++ QKEV R+ A+ + YG LSV + TK ++ D+ P Sbjct: 132 IIMSLLES-RLP--IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTKPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P VTS+VI + P+ E L ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277 >gi|116618707|ref|YP_819078.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271093|sp|Q03VR7|RSMA_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116097554|gb|ABJ62705.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 295 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 151/284 (53%), Gaps = 23/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + KK GQNFL DLN+L I E++ VIEIG G G LT+ L A Sbjct: 14 QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQ-LARSA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E D Q +L D + N +++I++D LKVD K F ++ ++I+ANLP Sbjct: 73 KKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKVISEEFGDNAHVKIVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + ++ W+++ ++ Q+EV +R+ A + YG L++ + +AT+ Sbjct: 132 YYITTPILIQLLRSNI---NWDNIVVMMQREVADRLNAAVGTKSYGVLTLTIQYFAQATL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKR 243 + F PSP V S V+ P L P +E++ K + + +F RRK+L ++ + Sbjct: 189 AIKVPASSFNPSPNVDSAVVKLTP-LKP-TTVVENVGKLFGVIKGSFSHRRKSLWNNMLQ 246 Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ L A I+ +RAE L++E F ++ L D Sbjct: 247 TYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLALRD 290 >gi|330444319|ref|YP_004377305.1| dimethyladenosine transferase [Chlamydophila pecorum E58] gi|328807429|gb|AEB41602.1| dimethyladenosine transferase [Chlamydophila pecorum E58] Length = 280 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 142/276 (51%), Gaps = 16/276 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L L+ + PKK + QNFL+D NI++KI S +G V+EIG G G LT+ L++ G Sbjct: 11 LTRFLAEIRESPKKGLSQNFLIDGNIIRKILSESQVQEGEWVLEIGPGFGALTEGLVSSG 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPY 127 A VI +EKD +F L ++ H LEI DA +K + R+IANLPY Sbjct: 71 AH-VIALEKDPKFATTLSELPLSH---LEIT--DARTYPLQKLSELGWEGKGRMIANLPY 124 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I T LL S P W+S+T++ Q EV RI AQ + YG L++ + Sbjct: 125 HITTPLLIKIFSEA--PHMWKSVTVMVQDEVARRIIAQPGNKDYGSLTIFLQFFAHVRYA 182 Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 F + F+P P+V S V+H + P+P + +T+ AF +RRK L +LK L Sbjct: 183 FKVRASCFYPQPQVHSAVVHMEVKEHFPLPETVFKDFFTLTRTAFQQRRKYLTNTLKDLF 242 Query: 246 GENL----LHQAGIETNLRAENLSIEDFCRITNILT 277 + L L Q I R E LS+ED+ + +L+ Sbjct: 243 PKELLLSALQQLRISDKARPETLSLEDYLALFKLLS 278 >gi|161611309|ref|YP_007394.2| dimethyladenosine transferase [Candidatus Protochlamydia amoebophila UWE25] gi|62900537|sp|Q6ME80|RSMA_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 284 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 150/287 (52%), Gaps = 21/287 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K L+ L+ I PKK + QNFL+D NI++KI +S G V+EIG GPG+LTQ + Sbjct: 5 KPSELRLFLNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAM 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISS-QHPNR-LEIIQDDALKVDFEKFFNISSPIR--- 120 L + A V+ +EKD F + +++ Q P++ LEI +D L E+ + S +R Sbjct: 65 LEVEAH-VVAVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEE--ELQSRLRDDQ 118 Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +IANLPY++ T +L + + SLT++ Q+EV R+TA Y ++ Sbjct: 119 KAKVIANLPYHLTTPILAEMVVRRK---LFSSLTVMVQEEVARRMTALPGQSDYSSFTIF 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + +K F +S + F+P+PKV S ++ P + KIT+ AF +RRK L Sbjct: 176 LNFYSKPRYGFTVSRNCFYPAPKVDSAIVVLELKEPPPNIDAQVFFKITRTAFEQRRKML 235 Query: 238 RQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 R SLK L N L G R E LS+EDF ++ + L ++ Sbjct: 236 RASLKSLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYHELYSSE 282 >gi|238758993|ref|ZP_04620164.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236] gi|238702804|gb|EEP95350.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236] Length = 232 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 130/235 (55%), Gaps = 18/235 (7%) Query: 51 VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDAL 105 ++EIG G G LT+ + AR + VIE D+ L + HP ++L I Q+DA+ Sbjct: 1 MVEIGPGLGALTE---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQEDAM 53 Query: 106 KVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 K++F + +R+ NLPYNI T L+F+ S + + + QKEV R+ A Sbjct: 54 KINFSELAEQAGQSLRVFGNLPYNISTPLMFHLFS---YTNAIHDMHFMLQKEVVNRLVA 110 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESL 222 NS YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + L Sbjct: 111 GPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRML 170 Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +IT +AF +RRKT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 171 TRITTQAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 225 >gi|54298928|ref|YP_125297.1| dimethyladenosine transferase [Legionella pneumophila str. Paris] gi|148361259|ref|YP_001252466.1| dimethyladenosine transferase [Legionella pneumophila str. Corby] gi|296108598|ref|YP_003620299.1| dimethyladenosine transferase [Legionella pneumophila 2300/99 Alcoy] gi|62900488|sp|Q5X0V1|RSMA_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221673|sp|A5IIC0|RSMA_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53752713|emb|CAH14148.1| hypothetical protein lpp2995 [Legionella pneumophila str. Paris] gi|148283032|gb|ABQ57120.1| dimethyladenosine transferase [Legionella pneumophila str. Corby] gi|295650500|gb|ADG26347.1| dimethyladenosine transferase [Legionella pneumophila 2300/99 Alcoy] Length = 256 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 136/261 (52%), Gaps = 12/261 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 P+K GQNFL D I+ +I + L ++EIG G G LTQ LL L I I+ D Sbjct: 5 PRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLLQKLNRLTAIEIDTD 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 Q + +S +L +I DAL VDF +F +R++ NLPYNI T LL + Sbjct: 65 LQNYLTRLPVSQ---GKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYLLK 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 T + + + QKEV ERI A + YGRLSV+ + + +FD+ P F P P Sbjct: 119 FITC---IDDMHFMLQKEVVERIAATHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKP 175 Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S ++ P+ ++P E L+ I +AF RRKTL +LK + + L+ GI+ Sbjct: 176 KVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGIDG 235 Query: 258 NLRAENLSIEDFCRITNILTD 278 R E +S+ ++ ++ +++ Sbjct: 236 GKRPEQISVAEYVQLAKFISN 256 >gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss] gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14] gi|27151610|sp|Q9PK40|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] Length = 277 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/265 (35%), Positives = 142/265 (53%), Gaps = 17/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK + QNFL+D NIL+KI ++ G V+EIG G G L+++L++ GA VI +EKD Sbjct: 21 KKALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFGALSEVLVSQGA-NVIALEKD-- 77 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 P+ ++ SQ P +EI DA K + RI+ANLPY+I T LL + Sbjct: 78 --PMFEESLSQLPIDIEIT--DACKYPLASLDDKGWKGKGRIVANLPYHITTPLLTKFFL 133 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P W+++T++ Q EV RITA Y L+V + F +SP+ F+P P Sbjct: 134 --ECPNRWKTVTVMIQDEVARRITANPGDKDYSSLTVFLRFFADVQYAFKVSPNCFYPKP 191 Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253 V+S V+H H + P+ ++ +T+ AFG+RRK L SLK L ++ +L Sbjct: 192 SVSSAVVHMRVHEDFPLSGSEIDEFFALTRAAFGQRRKLLANSLKNLYPKDKVFQVLEHL 251 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G R E +S+E++ +I +L D Sbjct: 252 GFSEKTRPETISLEEYLKIFRLLKD 276 >gi|217967874|ref|YP_002353380.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724] gi|217336973|gb|ACK42766.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724] Length = 279 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 153/280 (54%), Gaps = 15/280 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +KS L IL I KK +GQNFL+D NILKKI ++ ++E+G G G Sbjct: 1 MDLTSKSK-LIEILRRNNIFLKKSLGQNFLIDKNILKKIIDALEISKEDNILEVGCGVGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT + L A+KVI +E D++F IL+++ + N +EI+ +D LK+D + N+ P + Sbjct: 60 LT-LELAKKAKKVIGVEIDKRFKSILEELLKDY-NNVEILFEDVLKLDLSRIINL--PYK 115 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPY I L + P+ + ++ QKE+ ER+T+ S Y LS+L Sbjct: 116 LVGNLPYYISGSFLGEYFQKG---PYAHLMVIMLQKEMAERLTSSPGSKKYSPLSILLHI 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 ++ +SP FFP+P+V S V + F P L+ I E K+ +E+F +RRK L Sbjct: 173 TYSYEIISKVSPSCFFPAPEVESVVLKLKFNPKLDKI-YNKEFFFKLIKESFNQRRKFLL 231 Query: 239 QSLKR----LGGENLLHQAGIETNLRAENLSIEDFCRITN 274 +L+R + + + + I+ +RAE LS E + ++N Sbjct: 232 NNLERAFPSIDWKYVFTELNIDGKIRAEELSPEGYITLSN 271 >gi|325848863|ref|ZP_08170373.1| dimethyladenosine transferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480507|gb|EGC83569.1| dimethyladenosine transferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 282 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 93/274 (33%), Positives = 143/274 (52%), Gaps = 13/274 (4%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++K I Y K +GQNFL+D N + KI + S + G ++EIG G G ++Q + Sbjct: 8 KTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLS-EVSGENILEIGPGIGTISQEMAK 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NIS-SPIRIIAN 124 +K++VIE D+ PILKD + N ++II D LK D +K N S ++++N Sbjct: 67 -TCKKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGEDFKVVSN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T ++ D P + +T++ QKEV +R+ A + Y LSV + ++ Sbjct: 125 LPYYITTPIIEKLFEED-LP--CKDMTIMVQKEVADRMKADEKEKDYSSLSVFIKYYSEI 181 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL--- 241 T F + VF P PK+ S V+ L + SL I + F KRRKT+ SL Sbjct: 182 TGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEDVDVNSLFNIVRAGFNKRRKTILNSLSSV 241 Query: 242 -KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 ++ + + ++ NLRAENLS++DF I N Sbjct: 242 IEKEDLKKIFENLSLKENLRAENLSLDDFINIAN 275 >gi|293189141|ref|ZP_06607867.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309] gi|292821986|gb|EFF80919.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309] Length = 328 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 21/278 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I I P K +GQNF+ D ++KI + G G V+E+G G G+LT LL +G Sbjct: 37 VKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVVEVGPGLGSLTLALLEVG 96 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIA 123 AR V +E D L + S+ +RL ++ DA ++ F + +P +++A Sbjct: 97 AR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLVA 155 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L N + A P + + ++ Q EV +R+ A S YG SV W Sbjct: 156 NLPYNVAVPVLLNMLEAF---PSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYGS 212 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239 I VF+P P V S ++ L P + L++ T E AFG+RRKTLR Sbjct: 213 VERAGTIGRSVFWPVPGVDSALVRLT-RLE-TPRGDDELRRATFEVTDVAFGQRRKTLRA 270 Query: 240 SLKR-LGG----ENLLHQAGIETNLRAENLSIEDFCRI 272 +LK +GG E LL AGI+ R E LSI++F + Sbjct: 271 ALKNWVGGPEASEALLSAAGIDPTRRGETLSIDEFVEL 308 >gi|326202941|ref|ZP_08192808.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782] gi|325987018|gb|EGD47847.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782] Length = 285 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 153/293 (52%), Gaps = 27/293 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NN S I+ + + K +GQNFL D ++++I ++S IEIG G G+ Sbjct: 1 MIKNNTSE----IIKKHGLKLTKALGQNFLTDFGVVQRIVDASDIDKDTLAIEIGPGVGS 56 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFF 113 +T+ L A V IE D++ P L D S + N + II +D +K D +++ + Sbjct: 57 MTRELAERSA-GVAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDAIIKKYKELY 114 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 N S ++++ANLPY I T ++ ++ + + + QKEV ER+ + + YG Sbjct: 115 NAKS-VKVVANLPYYITTPIIMRFLEEVKG---VDKMVFMVQKEVAERMVSGPGTKDYGA 170 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFG 231 LSV + + ++FD+ PH F P P+V ST+I I P+ ++L KI + +FG Sbjct: 171 LSVAVQFYSNPKIVFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVADKNLYFKIVKASFG 230 Query: 232 KRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 +RRKTL +L G N ++ + G+ N+R E L++ F ++TN++ Sbjct: 231 QRRKTLVNALSNSGFFNKNKEQIKQIIAEMGLNENIRGEVLTVAQFAQLTNLI 283 >gi|307091890|gb|ADN28280.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 58/124 (46%), Positives = 89/124 (71%), Gaps = 1/124 (0%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 LDLN+ +IA ++G L+G+TV+E+G GPG LT+ L L A +V+ IE+D + L+ ++ Sbjct: 1 LDLNLTARIARAAGPLEGVTVVEVGPGPGGLTRAPLALSASRVVAIERDPRCVAALQTVA 60 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 ++P RL +I+ DAL++D + P RI+ANLPYNI T LL +W++A+ WPP+++SL Sbjct: 61 ERYPGRLTVIEGDALQIDASAYAQ-EGPARIVANLPYNIATALLVSWLTAEPWPPWYDSL 119 Query: 151 TLLF 154 TLLF Sbjct: 120 TLLF 123 >gi|52843122|ref|YP_096921.1| dimethyladenosine transferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|62900493|sp|Q5ZRF4|RSMA_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52630233|gb|AAU28974.1| dimethyladenosine transferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 256 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 135/261 (51%), Gaps = 12/261 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 P+K GQNFL D I+ +I + L ++EIG G G LTQ LL L I I+ D Sbjct: 5 PRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLLQKLNQLTAIEIDTD 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 Q + S +L +I DAL VDF +F +R++ NLPYNI T LL + Sbjct: 65 LQSYLTCLPASQ---GKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYLLK 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 T + + + QKEV ERI A + YGRLSV+ + + +FD+ P F P P Sbjct: 119 FITC---IDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRP 175 Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S ++ P+ ++P E L+ I +AF RRKTL +LK + + L+ GI+ Sbjct: 176 KVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGIDG 235 Query: 258 NLRAENLSIEDFCRITNILTD 278 R E +S+ ++ ++ +++ Sbjct: 236 GKRPEQISVAEYVQLAKFISN 256 >gi|298505979|gb|ADI84702.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase [Geobacter sulfurreducens KN400] Length = 276 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 20/271 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I +K +GQNFL D ++L +IA + G ++EIG G G LT L L A +++ +E Sbjct: 6 IRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEL-AGQLVAVEL 64 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLFN 136 D + P+L+ S +P+ + II+ D L +D + + P ++ ANLPYNI T +LF Sbjct: 65 DNRLVPLLRGSFSGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLFR 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + A + L L+ QKEVG R+ A S YG LSVL T + P F Sbjct: 124 LLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSFH 180 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-------- 246 P PKV S V+ F+P P + E +++ + +F RRKTL LK GG Sbjct: 181 PVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLK--GGALGVPTDG 238 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++L + GI+ R E LS+ +F +T L Sbjct: 239 IRDVLARCGIDEGRRGETLSLHEFASLTKEL 269 >gi|225012229|ref|ZP_03702666.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A] gi|225003784|gb|EEG41757.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A] Length = 261 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 98/253 (38%), Positives = 138/253 (54%), Gaps = 9/253 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL DL+I +KIA++ V+EIG G G LTQ L+ + + +IE D + Sbjct: 7 KKKLGQHFLNDLSIAQKIADTLVFDHYKKVLEIGPGMGVLTQFLVP-KTKNLHLIEIDSE 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S+ + I + D LK+ +K F P II N PYNI T+++F + Sbjct: 66 SVNYLRNNYSEIDTK--ITEGDFLKIKLKKIFG-DHPFAIIGNFPYNISTQIVFKTLEYR 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 PF+ + FQKEV ERI S YG LSVL T +F + PHVF P PKV Sbjct: 123 EQIPFFVGM---FQKEVAERICEPPGSKKYGILSVLAQIFYNTTYLFSVPPHVFSPPPKV 179 Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ + + C E L KI + +F +RRKTLR SLK L ++L + I +LR Sbjct: 180 DSAVMQMVRKEDFNLDCDEGLLFKIVKLSFQQRRKTLRNSLKTLNLPDILREDTI-FDLR 238 Query: 261 AENLSIEDFCRIT 273 E LS +DF ++T Sbjct: 239 PEKLSGDDFIQLT 251 >gi|30248888|ref|NP_840958.1| dimethyladenosine transferase [Nitrosomonas europaea ATCC 19718] gi|33516924|sp|Q82W15|RSMA_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|30138505|emb|CAD84795.1| ksgA; dimethyladenosine transferase [Nitrosomonas europaea ATCC 19718] Length = 257 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 15/264 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKD 79 P+K GQ+FL+D +++ +I + G +IEIG G G LT+ LL L +VI I++D Sbjct: 5 PRKRFGQHFLVDTSVIAEIIHIIHPVPGDRMIEIGPGLGALTKPLLNVLDELQVIEIDRD 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 I+ +S +P +L I DALK DF + + +RII NLPYNI T LLF+ Sbjct: 65 -----IVDYLSRTYPGKLVIHNIDALKFDFSE---LGEGLRIIGNLPYNISTPLLFHL-- 114 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + Q EV ER+ A ++P YGRLS++ R + M + F P P Sbjct: 115 -SRFSSLITDMYFMLQLEVVERMVALPSTPDYGRLSIMLQNRFEMEQMLVVPAESFDPPP 173 Query: 200 KVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 +V S ++ P P IP E L ++ AF +RRKTLR +L+ + + I++ Sbjct: 174 RVQSAIVCMRPKAEPTIPLKHERLFAELVSAAFSQRRKTLRNTLRHYLTADDFERLEIDS 233 Query: 258 NLRAENLSIEDFCRIT-NILTDNQ 280 LRAENLS+ + I + D Q Sbjct: 234 GLRAENLSLAQYAAIVRQVYEDRQ 257 >gi|330998260|ref|ZP_08322085.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT 11841] gi|329568649|gb|EGG50450.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT 11841] Length = 283 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 139/276 (50%), Gaps = 26/276 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL I + IA++ + GI V+E+G G G +TQ L+ G R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLVGKG-RPVKVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D F + + + +P E II+DD LK+ E+ F P + N PYNI +++ F Sbjct: 63 D---FESVAYLRANYPQLEENIIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKM 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P T + QKEV ERI A S YG LSVL +F + HVF P Sbjct: 119 LDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYSVEYLFTVHEHVFNP 175 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + C E L K++ + F +RRK LR S++ + + H+A E Sbjct: 176 PPKVKSAVIRMTRNSTTDLGCNERLFKQVVKTTFNQRRKVLRNSIRPVLA-DADHKARQE 234 Query: 257 TNL---------------RAENLSIEDFCRITNILT 277 L R E LS+ DF +TN +T Sbjct: 235 GRLPKDHAEFLSAEIFGRRPEQLSVADFINLTNAIT 270 >gi|331002316|ref|ZP_08325834.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str. F0167] gi|330410132|gb|EGG89566.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str. F0167] Length = 292 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 145/284 (51%), Gaps = 22/284 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D ++L KI +SG IEIG G G+LTQ L A+ Sbjct: 13 IIKKYDFSFQKKFGQNFLIDTHVLDKICLASGLGGNDLAIEIGPGIGSLTQYLANT-AKA 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-------FNISSPIRIIANL 125 V+ IE D+ PIL + + + N + II D LK+D +K + IRI+ANL Sbjct: 72 VVAIEIDKNLLPILNETLANYKN-ISIINADFLKIDLKKLIEDCRQKYGEFENIRIVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T ++ N + + +S+T++ QKEV +R+ A YG LS+ + + Sbjct: 131 PYYITTPIIMNVLESHIH---IDSITVMIQKEVADRMQALPGGKDYGALSLAVQYYSDPY 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 ++ + P+ F P PK+ S+VI I PI E L +I + F +RRKTL S+ Sbjct: 188 VVAFVPPNCFIPRPKIGSSVIRLDIYKEKPIKADNEKLMFQIIRAGFNQRRKTLVNSIGN 247 Query: 244 LG-----GENLLHQ---AGIETNLRAENLSIEDFCRITNILTDN 279 G E ++H G +R E LS+E+F ++ L D+ Sbjct: 248 FGEFNFSKEKIIHALSLLGKSEKIRGEALSLEEFAKLAGYLKDS 291 >gi|225571219|ref|ZP_03780217.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM 15053] gi|225160050|gb|EEG72669.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM 15053] Length = 291 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 149/289 (51%), Gaps = 21/289 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ IL Y +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTIE-ILQKYDFSFQKKFGQNFLIDTHVLDKIIRAADITKEDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KV+ +E D+ PIL D + N + +I +D LK+D + N P Sbjct: 64 TQYLAE-AAGKVVAVEIDKNLIPILTDTLHDYDN-VTVINEDVLKLDVRELAREENGGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T ++ D ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 LKVVANLPYYITTPIIMGLFENDVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + + ++ ++ P+ F P P+V S VI H P P ++ K I + +F +RRK Sbjct: 179 QYYAEPYIVANVPPNCFMPRPRVGSAVIRLTRHEKP-PVEVKDEKLMFDIIRASFNQRRK 237 Query: 236 TLRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 TL L L E L + + G +R E+L++E+F ++N + Sbjct: 238 TLANGLNNSDKLSLAKEELIEAIERLGKGPGVRGESLTLEEFAELSNYI 286 >gi|121596391|ref|YP_988287.1| dimethyladenosine transferase [Acidovorax sp. JS42] gi|226729746|sp|A1WD86|RSMA_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120608471|gb|ABM44211.1| dimethyladenosine transferase [Acidovorax sp. JS42] Length = 253 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 24/265 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ LG ++ V+ Sbjct: 2 KHIPRKRFGQHFLSDQGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLG--RLTVV 59 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 E D+ L+ QH +L++I+ D LKVDF + +S IR++ NLPYNI T +L Sbjct: 60 ELDRDLAARLR----QH-GQLDVIESDVLKVDFAQVAQALNASKIRVVGNLPYNISTPIL 114 Query: 135 FNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 F+ ++ AD + QKEV +R+ A + YGRLSV+ WR + Sbjct: 115 FHLLAHVRVIADQ--------HFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLF 166 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P P+V S V+ +PH P + L+++ Q AF +RRK LR +L R E Sbjct: 167 VPPESFDPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRW-LEAR 225 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 +T RAE + + ++ + Sbjct: 226 QFAGTFDTQRRAEEVPVSEYVALAQ 250 >gi|225026666|ref|ZP_03715858.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353] gi|224956036|gb|EEG37245.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353] Length = 293 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 147/278 (52%), Gaps = 18/278 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +L Y +K GQNFL+D ++L KI ++ V+EIG G G +TQ L AR Sbjct: 19 AVLQRYGFNFQKKYGQNFLIDTHVLDKIIGAAEIGKDDFVLEIGPGIGTMTQYLAE-AAR 77 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128 +V+ +E D + PIL+D ++ N + ++ +D LKVD K N PI+++ANLPY Sbjct: 78 EVVAVEIDTKLIPILEDTLKEYDN-VTVLNEDILKVDIRKIAEEKNGGKPIKVVANLPYY 136 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ ++ +S+T++ QKEV +R+ + YG LS+ + + ++ Sbjct: 137 ITTPIIMGLFESEVP---LDSITVMVQKEVADRMQVGPGTKDYGALSLAVQYYAEPYIVA 193 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLK---- 242 ++ P+ F P P V S VI + P+ + KI + +F +RRKTL+ L Sbjct: 194 NVPPNCFIPRPAVGSAVIRLTRYQEKPVKVNDSAFMFKIIRASFNQRRKTLQNGLYNSSE 253 Query: 243 -RLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276 R+ E L + G+ +R E LS+E+F ++++IL Sbjct: 254 LRIPKEKTVAALEEMGLTPTIRGEKLSLEEFAKLSDIL 291 >gi|220933005|ref|YP_002509913.1| dimethyladenosine transferase [Halothermothrix orenii H 168] gi|254807869|sp|B8D0I2|RSMA_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|219994315|gb|ACL70918.1| dimethyladenosine transferase [Halothermothrix orenii H 168] Length = 301 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 19/278 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y + K +GQNFL+D NI+ KI ++ + VIEIG G G+LTQ ++ R Sbjct: 14 IIRKYNLKLHKGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGR- 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS-PIRIIANLPYN 128 V EKD++ +L+++ + + N LE+I D L+VD++ FF+ IS ++++ANLPY Sbjct: 73 VFAFEKDKRLVKVLRELFNGY-NHLEVIGQDVLEVDWKHFFDSRGISDRSVKVLANLPYY 131 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + ++ + + L+ QKEV +R+ A S YG LSV + + + Sbjct: 132 ITTPVIMGLLESNIT---FSLMVLMVQKEVADRMAAAPGSKDYGALSVAVQYYGEVEIFH 188 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246 + P VF P P+V S++I PH P+ K+ + F +RRKTL+ SL + Sbjct: 189 KVPPTVFIPRPRVYSSIIKIKPHSEPVYRVKNEGFFFKMVRAIFQQRRKTLKNSLTKSSE 248 Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 L + + G++ +R E L+I+ ++N L Sbjct: 249 IKLDKGIVTEAIRELGLDPRIRGEKLTIKQMAILSNTL 286 >gi|261417535|ref|YP_003251217.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61] gi|319765192|ref|YP_004130693.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52] gi|261373992|gb|ACX76735.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61] gi|317110058|gb|ADU92550.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52] Length = 293 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 144/284 (50%), Gaps = 24/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL+KI + + IEIG G G LT+ L A Sbjct: 12 KEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQ-LARRA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E D + PIL D S + N + I D LK D E+ ++S + ++ANL Sbjct: 71 KKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDRM-VVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ D P + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 129 PYYVTTPIIMKLLT-DRLP--IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242 ++ + VF P P V S VI + +P P ++ ++ + +F +RRKTL +L Sbjct: 186 VIMTVPRTVFMPQPNVDSAVIRLVKRQHP-PVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244 Query: 243 R--LGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 GG E +L GI+ R E L I +F ++N L Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288 >gi|308272694|emb|CBX29298.1| Dimethyladenosine transferase [uncultured Desulfobacterium sp.] Length = 304 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 147/277 (53%), Gaps = 15/277 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S +T+LS + + PKK GQNFL D + + I S L ++E+G+G G LT + L Sbjct: 25 SPRTLLSAWNLSPKKQYGQNFLADPSTAEMIIFRSKILPEDIILEVGSGLGALT-IPLAA 83 Query: 69 GARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLP 126 A +V +EKD +L+ +I S+ + +EI+ ++ LK+D I + NLP Sbjct: 84 AAHQVYAVEKDPNLVQVLQNEILSKSIDNVEILNENILKLDINGLAAKHDRKIIVFGNLP 143 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI +++L I + L+FQKE+ +RI + S YGR+SV+ + Sbjct: 144 YNISSQILIKLIKERSC---VSRAILMFQKELAQRICGKPGSKDYGRISVMLKYCADTAK 200 Query: 187 MFDISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL--K 242 + D+ +F+P PK+ S + I F H + + + + AFGKRRKTL+ SL Sbjct: 201 IADVKASLFYPKPKIDSEILEIRFKEHQDVVADDETFFFSVIKAAFGKRRKTLKNSLSAS 260 Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274 LG E+ L+ AGI+ + R+E L+IE+F ++ N Sbjct: 261 ELGISAQNAESALNSAGIDPSRRSETLNIEEFVKLGN 297 >gi|319786166|ref|YP_004145641.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1] gi|317464678|gb|ADV26410.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1] Length = 257 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 12/258 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKD 79 PKK +GQNFL D + +++I ++ G V+EIG G G LT LL GA + VIE D Sbjct: 7 PKKSLGQNFLHDASYIERIVQAIDPRPGDRVVEIGPGQGALTLPLLRRHGA--LTVIEFD 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L ++++ +LEII D L+VD I++ NLPYNI + +LF+ + Sbjct: 65 RDLVGPLAEMAAPV-GQLEIIHRDVLQVDLAAL-AAGGKIKLAGNLPYNISSPILFHALD 122 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEV +R+ A S YGRLSV+ + +F + P F P+P Sbjct: 123 HAAA---ITDMVFMLQKEVVDRMGAGPGSKVYGRLSVMLQAYCQVQPLFVVPPGAFRPAP 179 Query: 200 KVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 KV S V+ +P +P + + + + AFG+RRKTLR +L+ + AG+ Sbjct: 180 KVDSAVVRLVPR-DPATIHIADRDRFAHVVRAAFGQRRKTLRNALRDVCSPEQFEAAGVS 238 Query: 257 TNLRAENLSIEDFCRITN 274 + RAE + + F R+ N Sbjct: 239 ADDRAEQVDVAGFVRLAN 256 >gi|296131650|ref|YP_003638897.1| dimethyladenosine transferase [Thermincola sp. JR] gi|296030228|gb|ADG80996.1| dimethyladenosine transferase [Thermincola potens JR] Length = 292 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 155/291 (53%), Gaps = 27/291 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I+ Y KK +GQNFL+D N++ I +++ V+EIG G G LT+ L Sbjct: 10 VKNIIEKYGFRFKKALGQNFLIDRNVVTNICKTADLKKSDLVVEIGPGIGTLTEQLAHY- 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-------DFEKFFNIS-SPIRI 121 A VI +E D+ IL++ + N + IIQ+D LKV DF K +++ P ++ Sbjct: 69 AGHVIAVELDKDLIGILEENLRAYGN-VTIIQNDILKVNLDKVVGDFRKEHDLAEGPYKV 127 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T +L ++ + + + ++ QKEV ERI AQ S YG LS+ + Sbjct: 128 VANLPYYITTPVLM-YLMENNFN--ISEIVVMIQKEVAERIAAQPGSKDYGALSLAVRYY 184 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLR 238 T+ ++ + VF P P+V S VI + L+ P + E L +I + AFG+RRKTL Sbjct: 185 TEPALVMRVPRTVFIPKPEVDSAVIK-LKRLSRPPVEVKDEELLFRIIRAAFGQRRKTLL 243 Query: 239 QSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL+ GG + L Q GI R E L++++F ++NI ++ D Sbjct: 244 NSLR--GGLGCDKEVIKKALTQVGINPERRGETLTLQEFAALSNIFSNLLD 292 >gi|160894460|ref|ZP_02075236.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50] gi|156863771|gb|EDO57202.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50] Length = 287 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N +++TI Y+ +K GQNFL+D +++ KI ++ V+EIG G G +T Sbjct: 4 LSNPQVTIQTI-KKYEFAFQKKFGQNFLIDDHVITKIINAAEITKDDLVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L A KVI +E D+ PIL + +++ N + II +D LK+D + N PI Sbjct: 63 QYLAE-SAGKVIAVEIDKNLIPILGETLAEYDN-VTIINEDILKLDINRLVEEENDGKPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ S YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---LQSITVMVQKEVADRMQVGPGSKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLK-KITQEAFGKRRKT 236 + K + ++ P+ F P P V S VI + P P + ESL K+ + +F +RRKT Sbjct: 178 YYAKPYIAANVPPNCFIPRPGVGSAVIRLTRYEEP-PVMVKDESLMFKLIRASFNQRRKT 236 Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ + + E L + G+ N+R E+L++ +F ++++ +++ Sbjct: 237 LQNGIANSPELPYSKAQVEKALEKMGLAANVRGESLTLAEFAKLSDTISE 286 >gi|153827422|ref|ZP_01980089.1| dimethyladenosine transferase [Vibrio cholerae MZO-2] gi|149738665|gb|EDM53008.1| dimethyladenosine transferase [Vibrio cholerae MZO-2] Length = 282 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 21/280 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 TM N H L H +K GQNFL D I+ I + G ++EIG G G + Sbjct: 11 TMRNDVH-----LGHKA---RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAI 62 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSP 118 T+ + K VIE D+ L++ HP ++L I + DA++ DF++ ++ Sbjct: 63 TEPV-GREVDKFTVIELDRDLAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNK 117 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +R+ NLPYNI T L+F+ + + + QKEV R+ A + YGRL+V+ Sbjct: 118 LRVFGNLPYNISTPLMFHLFEFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMA 174 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKT 236 + K + ++ P+ F P PKV S V+ +P+ + P P LE L ++ +E F +RRKT Sbjct: 175 QYYCKVVPVLEVPPNAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKT 234 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +R K L L GI +R ENL++ F + N L Sbjct: 235 VRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274 >gi|315604977|ref|ZP_07880031.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313256|gb|EFU61319.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 329 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 21/287 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I I P K +GQNF+ D +++I + G V+E+G G G+LT LL +G Sbjct: 38 VRAISEALGIRPTKVLGQNFVHDAGTVRRIVAAGDVRAGDEVVEVGPGLGSLTLALLEVG 97 Query: 70 ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIA 123 AR V +E D L + + R ++ DA ++ + F + P +++A Sbjct: 98 AR-VRAVEIDPPLASALPETIRSRMGEASGRFHVVTMDATEITGNEDFGVDWPPPTKLVA 156 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L N + A P E++ ++ Q EV +R+ A+ S YG SV W + Sbjct: 157 NLPYNVAVPVLLNMLDAF---PTIEAVVVMVQAEVADRLAAEPGSRTYGVPSVKASWYGE 213 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239 I VF+P P V S ++ P P E+L++ T E AFG+RRKTLR Sbjct: 214 VQRAGTIGRTVFWPVPGVDSALVRLT--RLPSPRGDEALRRATFEVTDVAFGQRRKTLRA 271 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +LK G E LL AGI+ R E LSI++F + + + ++ Sbjct: 272 ALKNWAGGPEASEALLCDAGIDPTRRGETLSIDEFVALGRAVLEARE 318 >gi|325298753|ref|YP_004258670.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides salanitronis DSM 18170] gi|324318306|gb|ADY36197.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides salanitronis DSM 18170] Length = 263 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 134/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ G R++ V+E D Sbjct: 6 PKKFLGQHFLKDLQVAQDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RQLKVVELDF 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ +Q + II+ D LK+D F P + N PYNI +++ F + Sbjct: 65 ESVAYLRENFAQLGD--NIIEKDFLKMDLSGLFG-GKPFVLTGNYPYNISSQIFFKMLDY 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LS+L K +F + HVF P PK Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAAPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L K+I + F +RRKTLR S+ + ++ A + Sbjct: 179 VKSAVIRMTRNDTTDLGCNEKLFKQIVKTTFNQRRKTLRNSISTILDKSHPLSADALFDK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS++DF +TN Sbjct: 239 RPEQLSVQDFISLTN 253 >gi|54113937|gb|AAV29602.1| NT02FT1085 [synthetic construct] Length = 262 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 136/265 (51%), Gaps = 9/265 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 Y KK +GQNFL D NI++KI + + V+EIG G G LT+ LL+ + V V Sbjct: 2 QYMTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D L + Q I D LK D N S+ I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS GRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P + + ++I +++F +RRKTL +LK + E + + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 254 G--IETNLRAENLSIEDFCRITNIL 276 ++TNLRAENLS+ DF + N L Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFL 261 >gi|261250207|ref|ZP_05942783.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891] gi|260939323|gb|EEX95309.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891] Length = 268 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 135/263 (51%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I S G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSSINPKPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L+ L ++ +E F +RRKT+R K L +L + GI Sbjct: 184 PKVDSAVVRLVPYEEIPHPVSDLKYLDRVCREGFNQRRKTVRNCYKGLLSAEVLEELGIN 243 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 ++R ENL++ F + N L N Sbjct: 244 PSMRPENLTLVQFVEMANWLAAN 266 >gi|89898507|ref|YP_515617.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56] gi|119365014|sp|Q253R6|RSMA_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89331879|dbj|BAE81472.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56] Length = 284 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 98/270 (36%), Positives = 143/270 (52%), Gaps = 23/270 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK + QNFL+D NIL+KI S G V+EIG G G LT++L+ GA V+ +EKD Sbjct: 26 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAH-VVALEKD- 83 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWI 138 P+ ++ Q P LEI DA K + R++ANLPY+I T LL Sbjct: 84 ---PMFEETLKQLPIDLEIT--DACKYPLSQLQEKGWQGKGRVVANLPYHITTPLLTKLF 138 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P W+++T++ Q EV RITAQ YG L++ + F +S FFP Sbjct: 139 LE--VPNQWKTITVMMQDEVARRITAQPGGKEYGSLTIFLQFFADVRYAFKVSSGCFFPK 196 Query: 199 PKVTSTVIHF-IPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGENL---- 249 P+V+S V+H + P+ ESL K +T+ AFG+RRK L +LK L ++L Sbjct: 197 PQVSSAVVHMTVKDTFPLE---ESLHKKFFSLTRAAFGQRRKLLANALKNLYPKDLVFSA 253 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q R E LS++++ ++ +L+ N Sbjct: 254 LNQLNFSEKTRPETLSLDEYLKLFQLLSLN 283 >gi|313204313|ref|YP_004042970.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4] gi|312443629|gb|ADQ79985.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4] Length = 281 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 98/255 (38%), Positives = 134/255 (52%), Gaps = 14/255 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KKY+GQ+FL D+ I +IA+S LDG T V+EIG G G LTQ LL + +E D+ Sbjct: 28 KKYLGQHFLKDMGIAGRIADSL-ILDGKTSVLEIGPGMGVLTQFLLQNPLIDLTAVELDK 86 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-S 139 + L QH +L +I+ D LK+D + F +I N PYNI +++ F + + Sbjct: 87 ESVEYL----HQHYPQLNVIEADFLKLDLKTIF--PDKFCVIGNFPYNISSQIFFKMLDN 140 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D+ P L + QKEV ERI A S YG LSVL K +F + HVF P P Sbjct: 141 KDSIP----CLAGMIQKEVAERIAAPAGSKTYGILSVLMQAYYKIEYLFTVHEHVFDPPP 196 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S VI F + ++ I C + K + + +F +RRKTLR SLK L A + Sbjct: 197 KVKSAVIRFTRNEVSKIDCDEQLFKAVVKTSFNQRRKTLRNSLKPLVEAGHPMYADPIFD 256 Query: 259 LRAENLSIEDFCRIT 273 LR E L + F +T Sbjct: 257 LRPERLDVAAFIDLT 271 >gi|297568597|ref|YP_003689941.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2] gi|296924512|gb|ADH85322.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2] Length = 287 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 140/287 (48%), Gaps = 18/287 (6%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N+S +K +L+ + P K +GQNFL+ + ++I + G TV+E+G G G LT+ Sbjct: 2 NQSE-IKKLLTERGLAPSKQLGQNFLIQPVLAERIVTAGGITPDDTVVELGVGLGALTRP 60 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 L AR VI +E D ++ P +E+ D L+ DF + + ++I+A Sbjct: 61 LAATAAR-VIGLEIDAGIIKYHRE-HQGLPANVELRHQDLLRADFAALAAEVGTRLKIMA 118 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY + LLF + L+ QKEV +R+TA+ S YG L+VL G Sbjct: 119 NLPYAVTNPLLFKLVEQRRA---IRQAVLMIQKEVAQRLTARPGSKEYGVLTVLLGTCAT 175 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQS 240 + ++ P F+P PKV S VI H P L+++ AF +RRKTL S Sbjct: 176 VQRLLEVGPGNFYPRPKVDSVVIAINFHEQPAALTEVDFALLRRVVDSAFRQRRKTLLNS 235 Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L G L L AGI+ RAENL EDF R+T +++ Sbjct: 236 LSAGAGLGLDRNQTAAALAAAGIDPRFRAENLDTEDFLRLTKAVSEQ 282 >gi|320166640|gb|EFW43539.1| dimethyladenosine transferase 1 [Capsaspora owczarzaki ATCC 30864] Length = 412 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 23/280 (8%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y + K + QNF+LDLN+ ++ + D I VIE+G+GPG LT+ +L G +KV I Sbjct: 18 YGLSAKSQLSQNFILDLNVTNRLIAPAKLKDAI-VIEVGSGPGALTRSILEAGPKKVFAI 76 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------NISSPIRIIANLP 126 EKD++F P L+ ++ R++++ D L +D+ K S+ + II NLP Sbjct: 77 EKDRRFLPSLQLLAEAAEGRMQVVHHDILTLDYTKLLAPLVKPQPWSEPSNGVYIIGNLP 136 Query: 127 YNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +NI TRLL + + + L FQ EV ERI A+ + RLS+L Sbjct: 137 FNISTRLLVDLVHDCRLKRGVFGFGRTHLLFTFQHEVAERIVAKPGTSDRSRLSLLVQHA 196 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240 A + + VF P PKV ++F P P+ + S++ + Q +R K + Sbjct: 197 FAARYHYHMPNTVFVPPPKVQVGGVYFAPLEQPMTAAPIASVELVAQHILNQRGKFISNG 256 Query: 241 LKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITN 274 + RL G N LL QA I R N+S E F + + Sbjct: 257 VGRLVGGNADIALQLLEQAKIPPTTRVSNVSTEQFAALVD 296 >gi|265765406|ref|ZP_06093681.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16] gi|263254790|gb|EEZ26224.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16] gi|301161792|emb|CBW21332.1| putative dimethyladenosine transferase [Bacteroides fragilis 638R] Length = 272 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL + +F ++ VF P PK Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPPPK 178 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + C + K+I + F +RRKTLR S+K + G++ N Sbjct: 179 VKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDTLFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+++F +TN Sbjct: 239 RPEQLSVQEFIHLTN 253 >gi|21241633|ref|NP_641215.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri str. 306] gi|294625753|ref|ZP_06704372.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664835|ref|ZP_06730156.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|27151571|sp|Q8PP25|RSMA_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21106994|gb|AAM35751.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri str. 306] gi|292599923|gb|EFF44041.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605391|gb|EFF48721.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 262 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L + ++ L II D L VDF + +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTEAAAPI-GALRIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ + T +F + P Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVLINDRRRFADVVRAGFGQRRKTLRNALSAICEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 235 DAAQVRPDARAEQLEVADFIRLANV 259 >gi|53712071|ref|YP_098063.1| dimethyladenosine transferase [Bacteroides fragilis YCH46] gi|60680265|ref|YP_210409.1| dimethyladenosine transferase [Bacteroides fragilis NCTC 9343] gi|253563890|ref|ZP_04841347.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5] gi|62900503|sp|Q64Y97|RSMA_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|81316665|sp|Q5LHC9|RSMA_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52214936|dbj|BAD47529.1| dimethyladenosine transferase [Bacteroides fragilis YCH46] gi|60491699|emb|CAH06452.1| putative dimethyladenosine transferase [Bacteroides fragilis NCTC 9343] gi|251947666|gb|EES87948.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5] Length = 272 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E D Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEVDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L++ + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 65 ESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + QKEV ERI A S YG LSVL + +F ++ VF P PK Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPPPK 178 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + C + K+I + F +RRKTLR S+K + G++ N Sbjct: 179 VKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDALFNK 238 Query: 260 RAENLSIEDFCRITN 274 R E LS+++F +TN Sbjct: 239 RPEQLSVQEFIHLTN 253 >gi|262403931|ref|ZP_06080488.1| dimethyladenosine transferase [Vibrio sp. RC586] gi|262349893|gb|EEY99029.1| dimethyladenosine transferase [Vibrio sp. RC586] Length = 272 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L GI Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEALGIN 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 + +R ENL++ F + N L Sbjct: 244 SGMRPENLTLAQFVALANWL 263 >gi|295702279|ref|YP_003595354.1| dimethyladenosine transferase [Bacillus megaterium DSM 319] gi|294799938|gb|ADF37004.1| dimethyladenosine transferase [Bacillus megaterium DSM 319] Length = 292 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 144/282 (51%), Gaps = 22/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + + + IEIG G G LT+ L A Sbjct: 12 KEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E DQ+ PIL D S + N ++I D LK D ++F NI + ++ANL Sbjct: 71 KKVLAFEIDQRLLPILADTLSPYSN-AKVIHQDVLKADLKGMLEQEFENIED-LMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L + + P + ++ QKEV ERI A+ + YG LS+ + T+A Sbjct: 129 PYYVTTPILMKLLE-EQIP--VRGIVVMLQKEVAERIAAKPGTKEYGSLSIAIQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI + P + ++ + +FG+RRKT+ +L Sbjct: 186 TVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNNLVN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ E L A I+ R E LSI++F ++++ L Sbjct: 246 NLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287 >gi|291295556|ref|YP_003506954.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279] gi|290470515|gb|ADD27934.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279] Length = 276 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 139/266 (52%), Gaps = 20/266 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L Y + K GQNFL++ + L++I E+ G G TV+E+G G G LT+ L G Sbjct: 17 VRDLLERYGLKADKRFGQNFLVERSYLQQIVEAVGLTPGQTVVEVGPGLGTLTRALAEAG 76 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA-NLPYN 128 AR V+ IE D++ + + + P ++II DAL D+ P + A NLPYN Sbjct: 77 AR-VVSIEMDRRLEAVYAETLAGLP--VQIIWADALSFDWSSL----PPQSLFAGNLPYN 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+ + ++ + + L QKEV R+ A+ +P YG LS+ + A + Sbjct: 130 IATPLITQLLLSNRF----RRIVALVQKEVALRMVARPATPAYGLLSLRVQYHAAARRIV 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 D+ P FFP PKVTS+VI P+ P L ++ + AF +RRKTL +LK G Sbjct: 186 DVPPGAFFPPPKVTSSVICLQPNNRP---DHPGLFRLIEAAFAQRRKTLVNALKAAGYPP 242 Query: 247 ---ENLLHQAGIETNLRAENLSIEDF 269 + L G+ N+RAE L + F Sbjct: 243 ERVKRGLEAMGLPDNVRAEALGLPQF 268 >gi|225011219|ref|ZP_03701678.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C] gi|225004633|gb|EEG42596.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C] Length = 286 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 102/266 (38%), Positives = 137/266 (51%), Gaps = 20/266 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D + +KIAE+ L+G VIEIG G G LTQ LL ++ ++ Sbjct: 22 VRAKKHLGQHFLKDQVVARKIAETL-LLNGYDNVIEIGPGTGVLTQYLLEQDIN-ILALD 79 Query: 78 KDQQFFPILK-DISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D++ LK D H E+ D LK D FN +P I N PYNI Sbjct: 80 LDRESIEYLKTDFEINHLKLLQRKKSFEVRNADFLKEDLSTLFN-GAPFGITGNFPYNIS 138 Query: 131 TRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T+++F + D P F T +FQKEV +RI ++ S YG LSVL +A +F Sbjct: 139 TQIVFKMLEYKDRVPEF----TGMFQKEVAQRICEKEGSKAYGILSVLVQAFYEAEYLFT 194 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GE 247 + P VF P PKV S V+ N I C LK + + AF +RRKTLR SLK L E Sbjct: 195 VHPEVFNPPPKVQSGVLRLTRKENQSIDCSETLLKTVVKAAFNQRRKTLRNSLKTLQLSE 254 Query: 248 NLLHQAGIETNLRAENLSIEDFCRIT 273 NL A + R E +S+ DF +T Sbjct: 255 NLTKDAIFDK--RPEQISVADFIALT 278 >gi|251773184|gb|EES53737.1| dimethyladenosine transferase [Leptospirillum ferrodiazotrophum] Length = 284 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/268 (36%), Positives = 139/268 (51%), Gaps = 16/268 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P +Y+GQ+FL D I ++I +S + L+ +EIG G LT+ L R +I++EK Sbjct: 14 PARYLGQHFLTDDRIAQRIVDSLPTELLESTPTLEIGPGRMILTRHLARRSPR-LILVEK 72 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ P L++ + ++EI + DAL+ E SP +I+NLPYNI LL I Sbjct: 73 DERLIPHLEESLREFGEKIEIRRGDALE---ENLVLEGSPYLVISNLPYNISVPLLLKII 129 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T PP L+FQKEV ERITA S YG LSV + +FDI P F P Sbjct: 130 GG-TPPPLMA--VLMFQKEVAERITAPAGSKDYGSLSVAARLLSTPRHLFDIRPGSFTPP 186 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGE------NLLH 251 PKV S+V+ F+P L + + AF RRKTL+ +LK+ L E L+ Sbjct: 187 PKVQSSVLSFVPAETRADPSLPGAFHLARAAFAYRRKTLKNALKQGLSPEIVEAVSPLVE 246 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 ++ R ENLS ED+ + L ++ Sbjct: 247 ALPQGSDCRPENLSPEDWLFLARTLREH 274 >gi|206972590|ref|ZP_03233533.1| dimethyladenosine transferase [Bacillus cereus AH1134] gi|206732492|gb|EDZ49671.1| dimethyladenosine transferase [Bacillus cereus AH1134] Length = 292 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68 K I+ Y KK +GQNFL+D N+L +I + + GS G IEIG G G LT+ L Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIAN 124 A+KV+ E DQ+ PIL + + + N + +I D LK D + FN + ++AN Sbjct: 68 RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242 + + VF P P V ST+I + P+ + ++ + +F +RRKTL +L Sbjct: 184 ETVMTVPRTVFVPQPNVDSTIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286 >gi|251794062|ref|YP_003008793.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2] gi|247541688|gb|ACS98706.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 142/278 (51%), Gaps = 22/278 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I++ Y KK +GQNFL+D NIL KI ++G +EIG G G LTQ L A Sbjct: 18 KEIIAKYGFSFKKSLGQNFLIDQNILHKIVSAAGLDKTKGALEIGPGIGALTQH-LAAAA 76 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 V IE D + PIL DI + ++++ D LK+D FE+ F + + ++ANLP Sbjct: 77 GTVTAIEIDNRLIPILGDILAGE-EHVKVVHGDVLKLDLKKLFEERFADVAGVSVVANLP 135 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + + P E++ ++ QKEV ER+ A+ YG LSV + + + Sbjct: 136 YYVTTPILMKLLE-ERLP--LENIVVMIQKEVAERMAAKPGGKEYGSLSVAVQYYCEPQL 192 Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242 + I PH VF P P V S VI P P +E +I Q +F +RRKTL +L Sbjct: 193 VC-IVPHTVFIPQPNVDSAVIKLAVREKP-PVEVEDEAHFFRIVQASFAQRRKTLANNLT 250 Query: 243 RLGGE-------NLLHQAGIETNLRAENLSIEDFCRIT 273 G+ LL I+ R E LS+++F RI+ Sbjct: 251 AFVGKERREEMTQLLISCEIDPVRRGETLSLDEFARIS 288 >gi|311065151|ref|YP_003971877.1| dimethyladenosine transferase [Bifidobacterium bifidum PRL2010] gi|310867471|gb|ADP36840.1| Dimethyladenosine transferase [Bifidobacterium bifidum PRL2010] Length = 313 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 18/283 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L G Sbjct: 29 IRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILETG 88 Query: 70 ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRI 121 A + +E D Q P I + P NRL +I DAL + F+ P + Sbjct: 89 A-TMTAVEIDPPVAQRLP--HTIDTYMPDARNRLTVINKDALALTSADLPEFSDDEPFTL 145 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ T ++ + S ++ QKEV +R+TA S YG SV W Sbjct: 146 VANLPYNVATPIILTLLERFD---MLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWY 202 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLK-KITQEAFGKRRKTL 237 A + +I HVF+P+P V S + F H P L L ++ AF +RRKTL Sbjct: 203 GSAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTL 262 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LKR+ + + H AGI+ R E L+I++F + L +Q Sbjct: 263 HAALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305 >gi|288941310|ref|YP_003443550.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180] gi|288896682|gb|ADC62518.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180] Length = 263 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/266 (34%), Positives = 135/266 (50%), Gaps = 27/266 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL D ++ +I + + G ++EIG G G +TQ LLT GA VI +++D Sbjct: 6 RKRFGQNFLHDPLVIDRIHAAIDARPGERLVEIGPGQGAITQGLLTRAGALDVIELDRDL 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 P+ + + L I DAL D + +R++ NLPYNI T LLF+++ Sbjct: 66 -IEPLRQRLGGL--GELRIHNADALDFDLRTLADSEGTLRLVGNLPYNISTPLLFHFLD- 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + L+ QKEV ERI A+ YGRLSV+ R A +F I P F P+PK Sbjct: 122 --QLDALQDMHLMLQKEVVERIAAEPGDKTYGRLSVMIQSRCAAASLFRIGPGAFKPAPK 179 Query: 201 VTST---------VIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 V S + H I P L+ +I AFG+RRKTLR SL + ++ Sbjct: 180 VESAFLRLRPLRPLPHPIDDPRLH---------GRIVAAAFGQRRKTLRNSLSGVVDLDI 230 Query: 250 LHQAGIETNLRAENLSIEDFCRITNI 275 + AGI+ RAE L + + R+ N+ Sbjct: 231 IEAAGIDPKRRAEELDVASYTRLANL 256 >gi|313141088|ref|ZP_07803281.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313133598|gb|EFR51215.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium bifidum NCIMB 41171] Length = 313 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 18/283 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L G Sbjct: 29 IRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILETG 88 Query: 70 ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRI 121 A + +E D Q P I + P NRL +I DAL + F+ P + Sbjct: 89 A-TMTAVEIDPPVAQRLP--HTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTL 145 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ T ++ + S ++ QKEV +R+TA S YG SV W Sbjct: 146 VANLPYNVATPIILTLLERFD---MLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWY 202 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLK-KITQEAFGKRRKTL 237 A + +I HVF+P+P V S + F H P L L ++ AF +RRKTL Sbjct: 203 GSAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTL 262 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LKR+ + + H AGI+ R E L+I++F + L +Q Sbjct: 263 HAALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305 >gi|291521141|emb|CBK79434.1| dimethyladenosine transferase [Coprococcus catus GD/7] Length = 287 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 143/278 (51%), Gaps = 20/278 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 ++ Y+ +K GQNFL+D ++L KI +G V+EIG G G +TQ L A K Sbjct: 13 VIKKYEFCFQKKFGQNFLIDGHVLDKIIAGAGVTKDDMVLEIGPGIGTMTQYLAE-AAGK 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 V+ +E D+ PIL++ + + N +++I D L +D EK N PI+++ANLPY I Sbjct: 72 VVAVEIDRNLLPILQETLADYDN-VKVIHADVLSLDLEKLVQEENGGRPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ++T++ QKEV R+ + S YG LS+ + + ++ + Sbjct: 131 TTPIIMALFEQHVP---LANVTVMVQKEVAARMKSGPGSKDYGALSLAVQYYAEPYIVAN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG 246 + + F P P V S VI + P P ++ K KI + +F +RRKTL+ L Sbjct: 188 VPCNCFMPRPNVDSAVIRLTRYEEP-PVQVKDEKMLFKIIRASFNQRRKTLQNGLNNSSE 246 Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 N + +AG ++R E L++E F ++T+IL Sbjct: 247 LNFTKDQIAAAIAEAGFSPSVRGEALTLEQFAKLTDIL 284 >gi|224283936|ref|ZP_03647258.1| dimethyladenosine transferase [Bifidobacterium bifidum NCIMB 41171] gi|310288290|ref|YP_003939549.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17] gi|309252227|gb|ADO53975.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17] Length = 316 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 18/283 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L G Sbjct: 32 IRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILETG 91 Query: 70 ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRI 121 A + +E D Q P I + P NRL +I DAL + F+ P + Sbjct: 92 A-TMTAVEIDPPVAQRLP--HTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTL 148 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ T ++ + S ++ QKEV +R+TA S YG SV W Sbjct: 149 VANLPYNVATPIILTLLERFD---MLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWY 205 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLK-KITQEAFGKRRKTL 237 A + +I HVF+P+P V S + F H P L L ++ AF +RRKTL Sbjct: 206 GSAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTL 265 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LKR+ + + H AGI+ R E L+I++F + L +Q Sbjct: 266 HAALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 308 >gi|212637885|ref|YP_002314405.1| dimethyladenosine transferase [Anoxybacillus flavithermus WK1] gi|226729751|sp|B7GFH0|RSMA_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|212559365|gb|ACJ32420.1| Dimethyladenosine transferase (rRNA methylation) [Anoxybacillus flavithermus WK1] Length = 295 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 143/282 (50%), Gaps = 22/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL++ NIL +I + + + VIEIG G G LT+ L A Sbjct: 12 KEILEKYGFSFKKSLGQNFLIEPNILHRIVDFAQLSERTGVIEIGPGIGALTEQ-LARRA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E DQ+ PIL D S + N + II +D LK D E+F ++ I ++ANL Sbjct: 71 KKVVAFEIDQRLLPILADTLSPYTN-VSIIHEDILKADVQQVIAEQFTDVDD-IMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ D P + ++ QKEV +R+ A+ + YG L++ + T A Sbjct: 129 PYYVTTPIIMKLLT-DRLP--IRGMVVMLQKEVADRMAAKPGTKDYGSLTIAVQYYTHAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI + P + + +FG+RRKT+ +L Sbjct: 186 TVMHVPRTVFVPKPNVDSAVIRLLKREQPAVSVSNEDFFFAVVRASFGQRRKTILNNLLN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ EN L AGI+ R E L+I +F ++ L Sbjct: 246 QLPNGKEKKEQIENALANAGIDPKRRGETLAIAEFATLSEQL 287 >gi|15640470|ref|NP_230097.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121729955|ref|ZP_01682375.1| dimethyladenosine transferase [Vibrio cholerae V52] gi|153830829|ref|ZP_01983496.1| dimethyladenosine transferase [Vibrio cholerae 623-39] gi|227080654|ref|YP_002809205.1| dimethyladenosine transferase [Vibrio cholerae M66-2] gi|254292213|ref|ZP_04962980.1| dimethyladenosine transferase [Vibrio cholerae AM-19226] gi|297580583|ref|ZP_06942509.1| dimethyladenosine transferase [Vibrio cholerae RC385] gi|298501025|ref|ZP_07010826.1| dimethyladenosine transferase [Vibrio cholerae MAK 757] gi|9654867|gb|AAF93616.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628295|gb|EAX60805.1| dimethyladenosine transferase [Vibrio cholerae V52] gi|148873688|gb|EDL71823.1| dimethyladenosine transferase [Vibrio cholerae 623-39] gi|150421870|gb|EDN13850.1| dimethyladenosine transferase [Vibrio cholerae AM-19226] gi|227008542|gb|ACP04754.1| dimethyladenosine transferase [Vibrio cholerae M66-2] gi|227012297|gb|ACP08507.1| dimethyladenosine transferase [Vibrio cholerae O395] gi|297534999|gb|EFH73834.1| dimethyladenosine transferase [Vibrio cholerae RC385] gi|297540273|gb|EFH76333.1| dimethyladenosine transferase [Vibrio cholerae MAK 757] Length = 282 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 21/280 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 TM N H L H +K GQNFL D I+ I + G ++EIG G G + Sbjct: 11 TMRNDVH-----LGHKA---RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAI 62 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSP 118 T+ + K VIE D+ L++ HP ++L I + DA++ DF++ ++ Sbjct: 63 TEPV-GREVDKFTVIELDRDLAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNK 117 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +R+ NLPYNI T L+F+ + + + QKEV R+ A + YGRL+V+ Sbjct: 118 LRVFGNLPYNISTPLMFHLFEFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMA 174 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKT 236 + K + ++ P F P PKV S V+ +P+ + P P LE L ++ +E F +RRKT Sbjct: 175 QYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKT 234 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +R K L L GI +R ENL++ F + N L Sbjct: 235 VRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274 >gi|320120297|gb|EFE28598.2| dimethyladenosine transferase [Filifactor alocis ATCC 35896] Length = 286 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 148/277 (53%), Gaps = 14/277 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +LK I Y K +GQNFL+D NIL+KI +S+ + VIE+G G G LT+ L Sbjct: 10 TLKEITKKYGFQFTKSLGQNFLVDTNILQKIVDSADIQEEDIVIEVGTGIGTLTRELAK- 68 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127 A+KV IE D++ PI+K+ +S + N ++ + D L+V E I++IAN+PY Sbjct: 69 RAKKVYAIEIDKKLIPIVKETTSNY-NNIDFVNMDFLEVVLEDLIQEKDRKIKVIANIPY 127 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + + ++ L+ QKEV +R++A+ ++ YG LSV + + + Sbjct: 128 YITTPIIMKCLESSLD---ISTILLMIQKEVADRLSAEPSTKAYGSLSVAVQYYSDVEFV 184 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL----K 242 +S F+P PKV S ++ I L ++ + AF KRRKT+ S+ + Sbjct: 185 GKVSKSCFYPQPKVDSGIVKLSKKHEYIFVRDRKLFSQVVKSAFAKRRKTISNSMIGFCE 244 Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 + +N+ L ++G + R E L++E+F ++N + Sbjct: 245 QFTKDNVMKALEKSGTDAKRRGETLTVEEFAHLSNCM 281 >gi|147904625|ref|NP_001079850.1| dimethyladenosine transferase 1, mitochondrial [Xenopus laevis] gi|82188081|sp|Q7T0W5|TFB1M_XENLA RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|33417098|gb|AAH56010.1| MGC68924 protein [Xenopus laevis] Length = 344 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 23/296 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I+ + + +K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIGEIVKLFNLRAEKQLSQNFLLDLKLTDKIVRRAGNLQNAYVCEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-I 119 G +++V+EKD +F P LK ++ ++ + D L ++ F + P + Sbjct: 77 GVEELLVVEKDTRFIPGLKMLNEASGGKVRTVHGDILTYRMDRAFPKHLIKSWDDEPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ AD PF +TL FQ+EV ER+TA + RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLEQVADRTGPFTYGRTQMTLTFQQEVAERLTASTKNKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S+++ + F I F P PKV V+H P + P I + ++K+ + F R Sbjct: 197 SIMSQYLCNVKNCFTIPGRAFIPKPKVDVGVVHLTPFVQPKIEQPFKLVEKVVRCIFQFR 256 Query: 234 RKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RK + L E +L A ++ LR L++ F ++ N+ + D Sbjct: 257 RKYCHHGVSILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312 >gi|262189700|ref|ZP_06048068.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93] gi|262034420|gb|EEY52792.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93] Length = 271 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L GI Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGIN 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 +R ENL++ F + N L Sbjct: 244 PGMRPENLTLAQFVALANWL 263 >gi|305665472|ref|YP_003861759.1| dimethyladenosine transferase [Maribacter sp. HTCC2170] gi|88710228|gb|EAR02460.1| dimethyladenosine transferase [Maribacter sp. HTCC2170] Length = 289 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 141/266 (53%), Gaps = 14/266 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D +I K+IAE+ + VIEIG G G LT+ LL ++ ++ D + Sbjct: 28 KKHLGQHFLKDESIAKQIAETLSFVGYKNVIEIGPGTGVLTKYLLQ-NEIDLVAMDLDSE 86 Query: 82 FFPILKD-ISSQHP------NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 L + + +HP + L++++ D LK + F+ S P I N PYNI T+++ Sbjct: 87 SIVYLNNNFALEHPEILGKKSSLKVVEADFLKYNLGLLFD-SEPFAITGNFPYNISTQIV 145 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + P + +FQKEV ERI A + + YG LSVLT A +F + P V Sbjct: 146 FKMLELKAQVP---EFSGMFQKEVAERICASEGNKTYGILSVLTQAFYNADYLFTVEPEV 202 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S V+ + + C E L ++ + AF +RRKTLR SLK N+L + Sbjct: 203 FDPPPKVHSGVMRLVRKDDFELGCDERLFFRVVKTAFNQRRKTLRNSLKSFDLSNILKED 262 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I + R E L++ +F + + D+ Sbjct: 263 AI-FDQRPEQLTVSEFIELAKKIADD 287 >gi|302388630|ref|YP_003824451.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM 16646] gi|302199258|gb|ADL06828.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM 16646] Length = 282 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 148/278 (53%), Gaps = 15/278 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ + I P K +GQ+FL+D L K+ E++ + V+EIG G G LT + L A Sbjct: 4 RAIMREFGIRPSKRLGQHFLIDEAPLYKMLEAARLNESDEVLEIGPGLGVLT-LELCRRA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYN 128 +KV+ +EKD P+L+ ++ + N + ++++D LK+D EK + +++ANLPY Sbjct: 63 KKVVAVEKDPNLIPVLEKLTKSY-NNICLLREDVLKLDMEKLWREYFDGKFKVVANLPYY 121 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + ++ I+ E ++ QKEV R+ A + YG LSV ++ Sbjct: 122 ITSPVIMKIINNRH---LIEMAVIMIQKEVAHRLVAAPGNKDYGILSVAVQLYADVDLVC 178 Query: 189 DISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLK-RLG 245 + F P PKV S V+ + + +P E L K+ + AFG+RRKT++ SL+ RL Sbjct: 179 HVGRSAFLPPPKVDSAVVRLVLKEGSAVPLEDERLFFKVVEAAFGERRKTVKNSLRSRLS 238 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E L +AGI+ + RAE L+IE+F + + D Sbjct: 239 LFAGDVEEALERAGIDGSRRAETLTIEEFAALAREIKD 276 >gi|83025311|gb|ABB95748.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 64 GARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + L FQKEV ERI AQ + R Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|167038515|ref|YP_001666093.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751385|ref|ZP_05492264.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus CCSD1] gi|320116911|ref|YP_004187070.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857349|gb|ABY95757.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749767|gb|EEU62792.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus CCSD1] gi|319930002|gb|ADV80687.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 273 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 16/263 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNF+ D NIL KI +SG V+EIG G G LT+ L +KV+ E D++ + Sbjct: 13 GQNFIFDKNILAKIVIASGVAPEDFVLEIGTGLGTLTEELAK-RVKKVVSFEIDRELYEA 71 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142 K+ + + N + I+ +D +K D + N P +++ANLPY I + ++ + Sbjct: 72 TKEKLNIYNNVI-IMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 F + +T+L QKEV ERI A + YG L+V ++ K ++F++ P VF P PKV Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKVD 186 Query: 203 STVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259 S+++ P+ + + + AFG+RRK L +LK LG + ++ +A +NL Sbjct: 187 SSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246 Query: 260 ----RAENLSIEDFCRITNILTD 278 R E LSIE+F + N++ D Sbjct: 247 SHQRRGETLSIEEFTALANVIYD 269 >gi|121591750|ref|ZP_01678961.1| dimethyladenosine transferase [Vibrio cholerae 2740-80] gi|147673129|ref|YP_001218711.1| dimethyladenosine transferase [Vibrio cholerae O395] gi|153217221|ref|ZP_01950985.1| dimethyladenosine transferase [Vibrio cholerae 1587] gi|153803545|ref|ZP_01958131.1| dimethyladenosine transferase [Vibrio cholerae MZO-3] gi|153820212|ref|ZP_01972879.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457] gi|229507082|ref|ZP_04396588.1| dimethyladenosine transferase [Vibrio cholerae BX 330286] gi|229508763|ref|ZP_04398255.1| dimethyladenosine transferase [Vibrio cholerae B33] gi|229512627|ref|ZP_04402096.1| dimethyladenosine transferase [Vibrio cholerae TMA 21] gi|229519750|ref|ZP_04409193.1| dimethyladenosine transferase [Vibrio cholerae RC9] gi|229519987|ref|ZP_04409416.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80] gi|229525136|ref|ZP_04414541.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426] gi|229530287|ref|ZP_04419675.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)] gi|229606262|ref|YP_002876910.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236] gi|254850674|ref|ZP_05240024.1| dimethyladenosine transferase [Vibrio cholerae MO10] gi|255743826|ref|ZP_05417783.1| dimethyladenosine transferase [Vibrio cholera CIRS 101] gi|262147179|ref|ZP_06027985.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1] gi|262167593|ref|ZP_06035297.1| dimethyladenosine transferase [Vibrio cholerae RC27] gi|27151608|sp|Q9KUS2|RSMA_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732637|sp|A5F8N2|RSMA_VIBC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121546388|gb|EAX56639.1| dimethyladenosine transferase [Vibrio cholerae 2740-80] gi|124113744|gb|EAY32564.1| dimethyladenosine transferase [Vibrio cholerae 1587] gi|124120912|gb|EAY39655.1| dimethyladenosine transferase [Vibrio cholerae MZO-3] gi|126509241|gb|EAZ71835.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457] gi|146315012|gb|ABQ19551.1| dimethyladenosine transferase [Vibrio cholerae O395] gi|229332060|gb|EEN97548.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)] gi|229338717|gb|EEO03734.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426] gi|229342936|gb|EEO07925.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80] gi|229344439|gb|EEO09414.1| dimethyladenosine transferase [Vibrio cholerae RC9] gi|229350304|gb|EEO15255.1| dimethyladenosine transferase [Vibrio cholerae TMA 21] gi|229354166|gb|EEO19097.1| dimethyladenosine transferase [Vibrio cholerae B33] gi|229355827|gb|EEO20747.1| dimethyladenosine transferase [Vibrio cholerae BX 330286] gi|229368917|gb|ACQ59340.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236] gi|254846379|gb|EET24793.1| dimethyladenosine transferase [Vibrio cholerae MO10] gi|255738575|gb|EET93963.1| dimethyladenosine transferase [Vibrio cholera CIRS 101] gi|262023929|gb|EEY42626.1| dimethyladenosine transferase [Vibrio cholerae RC27] gi|262031384|gb|EEY49992.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1] gi|327483299|gb|AEA77706.1| Dimethyladenosine transferase [Vibrio cholerae LMA3894-4] Length = 271 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L GI Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGIN 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 +R ENL++ F + N L Sbjct: 244 PGMRPENLTLAQFVALANWL 263 >gi|312883920|ref|ZP_07743637.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368378|gb|EFP95913.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 268 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP+ +L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPDLGEKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPSAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P+ + P P L+ L ++ +E F +RRKT+R K L ++L + GI Sbjct: 184 PKVDSAVVRLTPYEDLPHPVADLKWLDRVCREGFNQRRKTVRNCYKGLLDTDVLEELGIN 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 ++R ENL++E F + N L Sbjct: 244 PSMRPENLTLEQFVSMANWL 263 >gi|309787289|ref|ZP_07681901.1| dimethyladenosine transferase [Shigella dysenteriae 1617] gi|308924867|gb|EFP70362.1| dimethyladenosine transferase [Shigella dysenteriae 1617] Length = 249 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 130/253 (51%), Gaps = 18/253 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 ++ I + G ++EIG G LT+ +G R ++ VIE D+ L+ Sbjct: 1 MIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLAARLQT---- 53 Query: 93 HP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 HP +L I Q DA+ +F + + P+ + NLPYNI T L+F+ S + Sbjct: 54 HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLHVFGNLPYNISTPLMFHLFS---YTDAIA 110 Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV S V+ Sbjct: 111 DMHFMLQKEVVNRLVAGPNSKVYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL 170 Query: 209 IPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI 266 +PH P P + L +IT EAF +RRKT+R SL L +L GI+ +RAEN+S+ Sbjct: 171 VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISV 230 Query: 267 EDFCRITNILTDN 279 +C++ N L +N Sbjct: 231 AQYCQMANYLAEN 243 >gi|303241033|ref|ZP_07327543.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2] gi|302591458|gb|EFL61196.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2] Length = 279 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 143/277 (51%), Gaps = 19/277 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y I K +GQNFL D ++ +I +++ V+EIG G G++T L + A Sbjct: 6 KELIKKYGIKLTKSLGQNFLTDDKVVTRIVDTAEITYDDLVMEIGPGIGSMTGELASR-A 64 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYN 128 KV+ +E D+ P LK+ + N LEII +D +KV+ + + +++ ANLPY Sbjct: 65 GKVVAVEIDKYLIPALKENLKEFSN-LEIINEDIMKVNVKDITVNGQNMRVKVAANLPYY 123 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + + E + + QKEV +R+ A+ YG LSV + + +F Sbjct: 124 ITTPIIMKLLEEEND---IELMVFMVQKEVAQRMVAKPGGKDYGALSVAVQYYAQPEKVF 180 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLG 245 D+ PH F P P+V ST++ + P P L+ K+ + +FG+RRKTL +L G Sbjct: 181 DVPPHCFVPQPEVDSTIVKLKKNKMP-PVDLKDKDMFFKVVKASFGQRRKTLLNALTNFG 239 Query: 246 GEN--------LLHQAGIETNLRAENLSIEDFCRITN 274 G N +L + I N R E LSIE F ++N Sbjct: 240 GFNKSKEEIREILIKLNINENARGETLSIEQFASLSN 276 >gi|325478267|gb|EGC81386.1| dimethyladenosine transferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 280 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 143/274 (52%), Gaps = 13/274 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I Y K +GQNFL+D N + KI +++ + G VIEIG G G +T + + Sbjct: 10 VKEITDLYSFRFSKSLGQNFLVDKNFVDKIVDAA-DVSGENVIEIGPGIGTITYEMAKV- 67 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126 A+KV+ IE D PI+++ + N ++I +D LK D EK ++++NLP Sbjct: 68 AKKVVAIEIDDSLIPIIEENMVEFDN-FDLIHEDILKADLEKIVAEEFAGESFKVVSNLP 126 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ ++++ P + +T++ QKEV +R+ A + Y LSV + + A Sbjct: 127 YYITTPIIEKLVTSN-LP--CKDMTIMVQKEVADRMLATEKDKEYSSLSVFVKYYSDAKK 183 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + ++ VF P PK+ STV+ L + F KRRKT+ SL + Sbjct: 184 VTNVPKSVFMPQPKIDSTVLKLELRKYTDDVDEAKLFSLIHAGFNKRRKTILNSLSDVVE 243 Query: 247 ENLLHQA----GIETNLRAENLSIEDFCRITNIL 276 ++ L A GI+ NLRAENLS++DF + I+ Sbjct: 244 KDKLRLAFEKLGIKNNLRAENLSLDDFINLAKII 277 >gi|323690920|ref|ZP_08105212.1| ribosomal RNA small subunit methyltransferase A [Clostridium symbiosum WAL-14673] gi|323505045|gb|EGB20815.1| ribosomal RNA small subunit methyltransferase A [Clostridium symbiosum WAL-14673] Length = 292 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 143/279 (51%), Gaps = 20/279 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D ++L KI ++G V+EIG G G +TQ L A + Sbjct: 14 IIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAE-NAGR 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 V+ +E D PIL++ + N + II +D LK+D K +N PI+++ANLPY I Sbjct: 73 VVAVEIDSNLIPILEETLKDYDN-ITIINEDILKLDINKLAQEYNGGRPIKVVANLPYYI 131 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +++T++ QKEV +R+ + YG LS+ + + ++ + Sbjct: 132 TTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQYYAEPYIVAN 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGG 246 + P+ F P P V S VI H P P + E + K+ + +F +RRKTL L Sbjct: 189 VPPNCFIPRPNVGSAVIRLTRHRTP-PVEVDDRELMFKLIRASFNQRRKTLLNGLNNSPE 247 Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNILT 277 N+ + G+ ++R E L+++ F + N+L+ Sbjct: 248 INISKEKIAEAIEALGVSASVRGEALTLKQFAELANLLS 286 >gi|222112630|ref|YP_002554894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY] gi|254807865|sp|B9MIF6|RSMA_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221732074|gb|ACM34894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY] Length = 253 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 24/265 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ LG ++ V+ Sbjct: 2 KHIPRKRFGQHFLSDSGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLG--RLTVV 59 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSP-IRIIANLPYNIGTRLL 134 E D+ L+ QH +L++I+ D LKVDF + +++P IR++ NLPYNI T +L Sbjct: 60 ELDRDLAARLR----QH-GQLDVIESDVLKVDFAQVAQALNAPKIRVVGNLPYNISTPIL 114 Query: 135 FNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 F+ ++ AD + QKEV +R+ A + YGRLSV+ WR + Sbjct: 115 FHLLAHVRVIADQ--------HFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLF 166 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P P+V S V+ +PH P + L+++ Q AF +RRK LR +L R E Sbjct: 167 VPPESFDPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRW-LEAR 225 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 +T RAE + + ++ + Sbjct: 226 QFAGTFDTQRRAEEVPVSEYVALAQ 250 >gi|293603517|ref|ZP_06685938.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553] gi|292817953|gb|EFF77013.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553] Length = 261 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 15/263 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++ I + V+EIG G LT+ LL + +E D+ Sbjct: 7 RKRFGQNFLTDESVVESIVRAVAPARDDAVVEIGPGLSALTRPLLE-RLDHLTAVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ +RL +++ DAL VDF +F S +R++ NLPYNI + LLF+ + Sbjct: 66 LAARLR--KQFEASRLTVVEADALTVDFSQF---GSALRVVGNLPYNISSPLLFHLM--- 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 TW + Q+EV +R+ AQ S + RLSV+ R + +FD+ P F P PKV Sbjct: 118 TWADHIRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDPPPKV 177 Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 S ++ +P L P+ + + + + AF +RRK LR+ L + I Sbjct: 178 VSAIVRMVPLPADRLQPV--SVRAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDIAP 235 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 RAE++S++ + R+++ L + + Sbjct: 236 TARAEDISVDRYIRLSDALVEAK 258 >gi|260437839|ref|ZP_05791655.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876] gi|292809864|gb|EFF69069.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876] Length = 287 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++N +++L I H KK+ GQNFL+D I+ KI +G V+EIG G G Sbjct: 1 MYLSNPTNTLAVINKHEFAFQKKF-GQNFLIDEGIVNKIVREAGVTKDDFVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ LL A V +E D PILK+ +++ N + II +D LKVD +K N Sbjct: 60 MTQ-LLCEQAGGVAAVEIDTNLIPILKETLAEYDN-VTIINEDILKVDIKKLAEEKNGGK 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 118 PIKVVANLPYYITTPIIMGLFESNVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLA 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRR 234 + +K ++ ++ P F P P V S VI + P P ++ K K+ + +F +RR Sbjct: 175 VQYYSKPQVVINVPPECFIPRPNVGSAVIRLTRYKEP-PVKVKDEKLMFKLIRASFNQRR 233 Query: 235 KTLRQSLKRLGGENLLHQ---AGIET-----NLRAENLSIEDFCRITNILTD 278 KTL L N + A IE+ ++R E L++ +F +++ ++ Sbjct: 234 KTLANGLNNSPEINFSKEEITAAIESLHKGPSIRGEALTLSEFAALSDYFSN 285 >gi|258623405|ref|ZP_05718409.1| dimethyladenosine transferase [Vibrio mimicus VM573] gi|262172456|ref|ZP_06040134.1| dimethyladenosine transferase [Vibrio mimicus MB-451] gi|258584371|gb|EEW09116.1| dimethyladenosine transferase [Vibrio mimicus VM573] gi|261893532|gb|EEY39518.1| dimethyladenosine transferase [Vibrio mimicus MB-451] Length = 272 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 133/260 (51%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L GI Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEALGIN 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 +R ENL++ F + N L Sbjct: 244 PGMRPENLTLAQFVALANWL 263 >gi|332884271|gb|EGK04539.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas mossii DSM 22836] Length = 265 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 136/260 (52%), Gaps = 9/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL+I ++IA++ + VIE+G G G LTQ L+ + + V+E Sbjct: 4 VKPKKFLGQHFLKDLDIARRIADTLDDFTDVPVIEVGPGMGVLTQFLIE-KEKGLTVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P L D R I++ D L +D + S +I N PYNI +++ F + Sbjct: 63 DRDSVPYLNDHYPALHGR--IVEGDFLTLDLSAIY--SDKFCVIGNYPYNISSQIFFKVL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV ERI A+ YG LSVL +F +S VF P Sbjct: 119 E---YKNKVLCCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPP 175 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + C E L K + + F +RRKTLR S+K L G++ A Sbjct: 176 PKVKSAVVKLVRNKRGHLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCEAYADPIF 235 Query: 258 NLRAENLSIEDFCRITNILT 277 + R E LS+ DF ++TNI++ Sbjct: 236 DERPERLSVADFEKLTNIVS 255 >gi|289663557|ref|ZP_06485138.1| dimethyladenosine transferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 262 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L + ++ L II D L VDF + +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ + T +F + P Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 235 EAAQVRPDARAEQLEVADFIRLANV 259 >gi|258627053|ref|ZP_05721851.1| dimethyladenosine transferase [Vibrio mimicus VM603] gi|258580727|gb|EEW05678.1| dimethyladenosine transferase [Vibrio mimicus VM603] Length = 272 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 133/260 (51%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELASKLTIHEGDAMRFDFKQLVRPNNKLRVFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L GI Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEALGIN 243 Query: 257 TNLRAENLSIEDFCRITNIL 276 +R ENL++ F + N L Sbjct: 244 PGMRPENLTLAQFVALANWL 263 >gi|238855589|ref|ZP_04645891.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3] gi|260664781|ref|ZP_05865632.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US] gi|282932725|ref|ZP_06338133.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] gi|238831806|gb|EEQ24141.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3] gi|260561264|gb|EEX27237.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US] gi|281303135|gb|EFA95329.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] Length = 294 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 146/283 (51%), Gaps = 22/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69 K I++ Y KK +GQNFL+ LN + I +++ +DG V+EIG G G+LT+ +L G Sbjct: 14 KAIMNRYLGFAKKNLGQNFLISLNKINDILDAA-EIDGDDQVLEIGPGIGSLTEQMLLRG 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDFE----KFFNISSPI 119 A KV+ E DQ IL + Q + +++ D LK DF+ FF+++ P+ Sbjct: 73 A-KVLAYEIDQDLPEILHNELPQKIGDKYLDDVFKLVMKDILKADFKADIGNFFDLNKPV 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D +ESLTL+ QKEV ER+ A + YG L++ Sbjct: 132 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLR 238 + M + F P PKV S V+ P + + ++ + + F +RRKTL Sbjct: 189 TQMSVKMAVMVDHTNFNPQPKVDSAVVVLKPLVQKVDVGDTDNFDHVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK L ++ LL + +R E LSI+ F + L Sbjct: 249 NNLKSLVKDSEERKKLLQMLDLPEKVRPEELSIDQFIGLAKAL 291 >gi|291457904|ref|ZP_06597294.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419448|gb|EFE93167.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str. F0262] Length = 291 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/271 (34%), Positives = 142/271 (52%), Gaps = 26/271 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL+D ++L+ I +S V+EIG G G LTQ L ARKVI +E D++ Sbjct: 22 QKRFGQNFLIDESVLRDILAASEITREDCVLEIGPGIGTLTQALCE-SARKVIAVELDKK 80 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNIGTRLLFNWI 138 PIL++ S + N L +IQ DAL++D K N PI++ ANLPY I + +L + + Sbjct: 81 LIPILEENLSAYDN-LRLIQGDALRLDLTKLIGEENDGHPIKVAANLPYYITSPILMSLL 139 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ P S+T++ Q+EV +R+ A + YG LS+ + K ++ ++ F P Sbjct: 140 --ESRAPI-RSITIMVQREVADRMRALPGTKSYGALSLAVQYYAKIDLIRTVASSCFLPR 196 Query: 199 PKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------- 246 P V S V+ P NP L ++ + AF RRKTL +L GG Sbjct: 197 PNVDSAVVKLTLRSETPE-NPEEKAF--LFRLIRSAFATRRKTLANALS--GGLSLPKER 251 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L + G+ N+R E LS+ F ++ +L Sbjct: 252 TEEALRELGLSENIRGEALSLSQFSALSALL 282 >gi|332704211|ref|ZP_08424299.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio africanus str. Walvis Bay] gi|332554360|gb|EGJ51404.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio africanus str. Walvis Bay] Length = 265 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 139/271 (51%), Gaps = 20/271 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K K+ +GQNFL D NI +KI + +G TV+EIG G G LT+ L A++V+ +E Sbjct: 7 KPFAKRSLGQNFLQDENIARKIVAALELQEGDTVVEIGPGRGALTRWLDESPAQRVLALE 66 Query: 78 KDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 KD KD++ Q HP R+EI+ DAL+ +E+ + S ++ I NLPYNI + L Sbjct: 67 KD-------KDLAQQLGMVHP-RVEIVVADALRYSWEELAGVES-LKYIGNLPYNIASPL 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 ++ +S P + + Q EVG R+TA + YG LS +F + P Sbjct: 118 MWEIVSRS---PRYSRAVFMVQHEVGLRLTACPGNKSYGALSAWIQSFANVRYLFRVPPQ 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S V+ F P I P L K+ F KRRK LR L+ GE + Sbjct: 175 VFRPKPKVDSAVLCFEPLAKEIRPTHPALLAKLLHICFQKRRKQLRNILRDWWGERVGTS 234 Query: 253 AGIETNL---RAENLSIEDFCRITNILTDNQ 280 AG L R E L+ ++F R+ ++ ++ Sbjct: 235 AGEFIKLAEARPEELTPKEFQRLALLIWGDE 265 >gi|163814787|ref|ZP_02206176.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759] gi|158450422|gb|EDP27417.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759] Length = 287 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 150/290 (51%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N +++TI Y+ +K GQNFL+D +++ KI ++ V+EIG G G +T Sbjct: 4 LSNPQVTIETI-KKYEFAFQKKFGQNFLIDSHVINKIISAADITKDDCVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L A +V+ +E D+ PIL + +++ N + +I DD LKVD K N PI Sbjct: 63 QYLAE-SAGQVVAVEIDKNLLPILDETLAEYDN-VTVINDDILKVDINKIVEERNGGRPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ P S+T++ QKEV +R+ + YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFEKHV--PLL-SVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI P P ++ + ++ + +F +RRKT Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLTRFQEP-PVKVKDEQLMFRLIRASFNQRRKT 236 Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ + G L GI N+R E+L + +F +++IL+D Sbjct: 237 LQNGIANSGELSFTKEEVAKALESLGISANIRGESLGLAEFAALSDILSD 286 >gi|184154665|ref|YP_001843005.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956] gi|227514301|ref|ZP_03944350.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931] gi|183226009|dbj|BAG26525.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956] gi|227087349|gb|EEI22661.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931] Length = 295 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 148/287 (51%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y I KK GQNFL + ++L I ++G VIEIG G G LT+ L A Sbjct: 12 RAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQ-AA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANL 125 +V+ +E D+ P+L D+ + + N + ++ D LK + F + + P++++ANL Sbjct: 71 GEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVKVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +LF +++ W ++ ++ QKEV +R+ A+ + YG L++ +R Sbjct: 130 PYYITSPILFALLASQVE---WAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDYRMDVK 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQSLK 242 + F++S F P+P V S ++ +P + L + + F RRK+L +LK Sbjct: 187 VAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSLWNNLK 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + G++ +L + I++ R E LS+ DF + N + + + Sbjct: 247 TIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293 >gi|254520467|ref|ZP_05132523.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA] gi|226914216|gb|EEH99417.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA] Length = 281 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 14/270 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 ++ Y K +GQNFL+D ++ + I + + VIEIG G G LT LL A+K Sbjct: 11 LVKKYNFKFSKSLGQNFLIDDSVPRDIVAGAEVDENDLVIEIGPGVGTLTAQLLN-KAKK 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V+ IE D PIL +P + +I DALKV+F + ++++ANLPY + T Sbjct: 70 VVAIELDNDLIPILNQEIGDNP-KFTLIHKDALKVNFNEIIGEEKSVKLVANLPYYVTTP 128 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + ++SLT++ QKEV ER+ A + YG LS+L + ++ + P Sbjct: 129 IIVKLLKEGYN---FKSLTIMIQKEVAERMNANPGNKDYGSLSLLVQYYCNTKIVRRVPP 185 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLG--GE 247 F P PKV S VI + L+ +E+ K I + +F RRKTL +K +G E Sbjct: 186 QCFIPRPKVDSIVIR-LDKLSEPKVKVENEKLFFDIIRNSFNMRRKTLWNGVKNIGLSKE 244 Query: 248 NL---LHQAGIETNLRAENLSIEDFCRITN 274 NL ++A I+ R E L+IE+F +++ Sbjct: 245 NLELAFNEANIDPKRRGETLTIEEFATLSD 274 >gi|83025313|gb|ABB95749.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFXLDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 64 GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + L FQKEV ERI AQ + R Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L +N L +A I+ N A +L + DF +I D D Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIQPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|218283941|ref|ZP_03489809.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989] gi|218215520|gb|EEC89058.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989] Length = 289 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 141/275 (51%), Gaps = 17/275 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I YK+ KK GQNF+++ +++KIA ++ V EIG G G LTQ L + Sbjct: 12 KEIQEKYKVFTKKSFGQNFIIEPGVVEKIANAAIQSRDELVFEIGPGIGALTQFLCE-KS 70 Query: 71 RKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDF-EKFFNISSP---IRIIANL 125 +V+ E D++ +L+ +I H L+I+ +D LKVD EK P + +NL Sbjct: 71 DQVVAFEIDERLPVVLENEIGFDH---LQIVLEDILKVDIDEKIREFRKPGQKVVFASNL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +LF A+ E +T++ QKEVGER A +N Y LSV+T +R Sbjct: 128 PYYITTPILFKLFEANEE---IERITVMMQKEVGERFLAHENDKEYNALSVITQYRCDVK 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--- 242 + D+S VF+PSP V S VI F H + + F +RRKT+ + + Sbjct: 185 KVMDVSRRVFWPSPNVDSMVIQFSFHHKYHLEDENYFFDLVKACFTQRRKTIYNNFQNFV 244 Query: 243 --RLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 + + LL Q I+ + RA+ ++EDF R+ + Sbjct: 245 KDKTLAKQLLEQVNIDPSTRAQQCTLEDFIRLYGV 279 >gi|83025307|gb|ABB95746.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + P R+ I D LKV+ KF + SP Sbjct: 64 GARQVVVIEKDARFLGPLRLLQEAAPGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWESLTLL-FQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + +L FQKEV ERI A + R Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAPPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|297621735|ref|YP_003709872.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044] gi|297377036|gb|ADI38866.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044] Length = 283 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 144/276 (52%), Gaps = 19/276 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 + ++N S L+ L I PKK + QNFL+D NI+ KI + V+EIG GPG Sbjct: 10 LRLSNPSQ-LRQYLEILGISPKKSLSQNFLIDGNIIDKIISLAEINAQDQVLEIGPGPGA 68 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L GAR V+ +EKD+ IL + + +I +D LKVD EK +S Sbjct: 69 LTDALHQHGAR-VLAVEKDR----ILAKALQERGGDIRVICEDVLKVDLEK--ELSERAT 121 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +IANLPYNI + +L + + ++ + ++ Q EV ER+TA + YG L+V + Sbjct: 122 VIANLPYNITSPILTSLLPKTH---VFKRIVVMVQLEVAERLTASPGNKTYGSLTVFSNL 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLR 238 + F +S FFP P V S V+ F L+P P + E+ ++ + AFG+RRK L+ Sbjct: 179 FSTPQWGFKVSRRCFFPEPNVDSAVVRF--DLSPPPKEVEDEAFFQLIRTAFGQRRKMLK 236 Query: 239 QSLKRLGGENLLHQA----GIETNLRAENLSIEDFC 270 SLK+L + + QA G + R E LS F Sbjct: 237 SSLKKLYPSSSVMQALAGIGFQETARPEELSSNQFV 272 >gi|118602555|ref|YP_903770.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567494|gb|ABL02299.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 250 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 134/251 (53%), Gaps = 13/251 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQNFL+D I+ +I + ++EIG G G +T LL ++ VIE D+ Sbjct: 6 KRFGQNFLVDHRIIDRIIATIAPKRDDNLLEIGPGQGAITLPLLDY-VDQLNVIEIDRNL 64 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 IL+ S +H N L + Q D LK D + PIR+I NLPYNI + +LF + Sbjct: 65 ISILE--SLKHSN-LIVHQGDVLKFDLNV---VPIPIRVIGNLPYNISSHVLFYLLKNLN 118 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + +T + QKEV ERI A S YGRLSV+ M+F + P F P+P+V Sbjct: 119 K---IKDMTFMLQKEVVERIAANNGSKIYGRLSVMMQAFFDVQMIFIVPPESFNPAPRVE 175 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S V+H P P ++ L+K+ + AF +RRKTL+ LK + + Q I+ + RAE Sbjct: 176 SAVVHLKPLTQPKTKDIKILEKVVKLAFSQRRKTLKNCLKSILTQK---QTNIDLSQRAE 232 Query: 263 NLSIEDFCRIT 273 L+I++F +T Sbjct: 233 MLTIDNFITLT 243 >gi|323483571|ref|ZP_08088956.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum WAL-14163] gi|323403127|gb|EGA95440.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum WAL-14163] Length = 292 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 143/279 (51%), Gaps = 20/279 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y +K GQNFL+D ++L KI ++G V+EIG G G +TQ L A + Sbjct: 14 IIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAE-NAGR 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 V+ +E D PIL++ + N + +I +D LK+D K +N PI+++ANLPY I Sbjct: 73 VVAVEIDSNLIPILEETLKDYDN-ITVINEDILKLDINKLAQEYNGGRPIKVVANLPYYI 131 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +++T++ QKEV +R+ + YG LS+ + + ++ + Sbjct: 132 TTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQYYAEPYIVAN 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGG 246 + P+ F P P V S VI H P P + E + K+ + +F +RRKTL L Sbjct: 189 VPPNCFIPRPNVGSAVIRLTRHRTP-PVEVDDRELMFKLIRASFNQRRKTLLNGLNNSPE 247 Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNILT 277 N+ + G+ ++R E L+++ F + N+L+ Sbjct: 248 INISKEKIAEAIEALGVSASVRGEALALKQFAELANLLS 286 >gi|303231892|ref|ZP_07318601.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6] gi|302513421|gb|EFL55454.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6] Length = 284 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/269 (32%), Positives = 141/269 (52%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I +++ +G V+EIG G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGA-N 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D + +L +Q+ N + I+ D LK+D + P +++ANLPY I T Sbjct: 74 VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMH-HEPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + ++ P E L ++ QKEV R+ A+ + YG LSV + TK ++ D+ P Sbjct: 132 IIMSLL--ESRLPI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTKPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P VTS+VI + P+ E L ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277 >gi|325928235|ref|ZP_08189440.1| dimethyladenosine transferase [Xanthomonas perforans 91-118] gi|325541395|gb|EGD12932.1| dimethyladenosine transferase [Xanthomonas perforans 91-118] Length = 262 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T LL GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRRHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L + ++ L II D L VDF + +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ + T +F + P Sbjct: 119 LFHALDHAAA---VTDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 235 DAAQVRPDARAEQLEVADFIRLANV 259 >gi|291562910|emb|CBL41726.1| dimethyladenosine transferase [butyrate-producing bacterium SS3/4] Length = 288 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 146/279 (52%), Gaps = 18/279 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y+ + +K GQNFL+D ++L+KI ++G V+EIG G G +TQ L A Sbjct: 13 IIQKYEFMFQKKFGQNFLIDTHVLEKIISAAGITKNDCVLEIGPGIGTMTQYLAE-NAGH 71 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129 V+ +E D+ PILK+ + + N + +I +D L+VD + +N PI+++ANLPY I Sbjct: 72 VVAVEIDRNLIPILKETLADYDN-VTVINEDILRVDIKALAEEYNGGKPIKVVANLPYYI 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +++T++ QKEV +R+ S YG LS+ + + ++ + Sbjct: 131 TTPIIMGLFESGVP---IDNITVMVQKEVADRMKEGPGSKDYGALSLAVQYYAEPEIVAN 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG- 246 + P+ F P P V S VI H P+ +L KI + +F +RRKTL+ L Sbjct: 188 VPPNCFIPRPNVGSAVIRLTRHKEMPVEVKDPALMFKIIRASFNQRRKTLQNGLGNAPEL 247 Query: 247 -------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + G+ +R E LS+ F ++++IL + Sbjct: 248 PYTKEQIAAAIAEMGLTPTIRGEALSLAQFAQLSDILGE 286 >gi|166710725|ref|ZP_02241932.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 262 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 133/265 (50%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L + ++ L II D L VDF + +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ T +F + P Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 235 EAAQVRPDARAEQLEVADFIRLANV 259 >gi|325264298|ref|ZP_08131029.1| dimethyladenosine transferase [Clostridium sp. D5] gi|324030369|gb|EGB91653.1| dimethyladenosine transferase [Clostridium sp. D5] Length = 303 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 147/290 (50%), Gaps = 21/290 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 14 TLGNPQNTI-AVLHRYNFAFQKKFGQNFLIDTHVLDKIIRSAEISRDDMVLEIGPGIGTM 72 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KVI +E D+ PIL+D N + ++ +D LKVD + N P Sbjct: 73 TQ-YLACAAGKVIAVEIDRALIPILEDTLDGFDN-VTVLNEDILKVDIAELAERENGGRP 130 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ +S+T++ QKEV ER+ + YG LS+ Sbjct: 131 IKVVANLPYYITTPIIMGLFEKHVP---VKSITVMVQKEVAERMQVGPGTKDYGALSLAV 187 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235 + K ++ ++ P+ F P PKV S VI + P P ++ + +I + +F +RRK Sbjct: 188 QYYAKPYIVANVPPNCFMPRPKVGSAVICLERYEKP-PVQVDDERLMFRIIRASFNQRRK 246 Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL +K + E + G +R E L++E+F +TN L+ Sbjct: 247 TLANGMKNSPELDYTKEQIEAAIESLGRGAGVRGEALTLEEFAALTNALS 296 >gi|83025305|gb|ABB95745.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 64 GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNI----GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + L FQKEV ERI AQ + R Sbjct: 124 IRLVSNLPFNITMPFXVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|290974683|ref|XP_002670074.1| predicted protein [Naegleria gruberi] gi|284083629|gb|EFC37330.1| predicted protein [Naegleria gruberi] Length = 318 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 25/250 (10%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y + K + QNFLL+L++ KI G + TVIEIG GPG LT+ +L +++IV+ Sbjct: 2 YGLQASKQLSQNFLLNLHVTDKIVRVCGDISNKTVIEIGPGPGCLTRSILQANPKRLIVV 61 Query: 77 EKDQQFFPILKDI-SSQHPNRLEIIQDDALKVD-----------FEKFFNIS---SPIRI 121 EKD++F P L+++ S ++ I+Q D LKVD EK S + + Sbjct: 62 EKDERFMPALQNLQQSVDDGKMHIVQGDILKVDQFKLVDHFLEKDEKVLKNSDELANVVF 121 Query: 122 IANLPYNIGTRLLFNWI--SADTWPPFWES----LTLLFQKEVGERITAQKNSPHYGRLS 175 I NLP+ I T LL NW+ A+ F + L+FQKEVG R++A+ ++ +GRLS Sbjct: 122 IGNLPFGIATPLLINWLKDCANGTGAFAFGKKIPMVLMFQKEVGLRMSAKNSTKEFGRLS 181 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP----CCLESLKKITQEAFG 231 V + MF ++ F P+PKV ++V+ IP P+ E L++ + F Sbjct: 182 VSSQSVCDVEHMFVVNAKSFVPAPKVDASVMRLIPKTTPLIDNSLVQFEDLEQFCRIIFN 241 Query: 232 KRRKTLRQSL 241 +RK L +L Sbjct: 242 GKRKQLNTNL 251 >gi|85057928|ref|YP_456844.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] gi|122064281|sp|Q2NIH8|RSMA_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|84790033|gb|ABC65765.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 268 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 143/262 (54%), Gaps = 19/262 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D+N+L KI + S+ V+EIG G G LT++++ A+ V+ E D Sbjct: 6 KKKYGQNFLTDVNLLNKIV-TKASITDKNVLEIGPGKGALTKIIVP-QAKNVLAYEIDAT 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 P L + ++ N + II DD LK DF+ +F+ +S + +I NLPY I + +LF Sbjct: 64 LKPFL---NFENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I P T++ QKEVG R+ AQ N+ +Y LSV+ + + ++ H+FFP Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLH--- 251 +PKV S VI + N +P L+ K + +F ++RKTL +L L E ++ Sbjct: 177 TPKVDSIVIKLTKNNNILPTFLKQFIKFVKNSFKQKRKTLLNNLSCQFLLSKETIIPFFL 236 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 Q I +RAE +++E F ++T Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258 >gi|307243374|ref|ZP_07525533.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM 17678] gi|306493244|gb|EFM65238.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM 17678] Length = 292 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 16/265 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL+D NI+ KI +G G +IE+G G G LT+ + + A ++ +E D+ Sbjct: 24 KSLGQNFLIDDNIVDKIVAGAGIGPGDKIIEVGPGIGTLTREMASR-AEALMAVEIDKNL 82 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWIS 139 PIL D + N ++I+ +D +K D + + P++++ANLPY I T ++ ++ Sbjct: 83 IPILADTLGDYDN-VKIVNEDIIKADIRGLIDENLGGGPVKLVANLPYYITTPIIMRFLE 141 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + ++ QKEV ER+ AQ +G LSV + ++ + H+F P P Sbjct: 142 ENIN---VTDIVVMVQKEVAERMNAQPGGKDFGALSVAVQYYCDTEIVAKVPRHLFVPQP 198 Query: 200 KVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG------ENLLH 251 V S VI + E L K+ + AFG+RRKTL S+ +G + L Sbjct: 199 NVDSIVIALRVRPERKYKVDDEDLYFKVVKAAFGQRRKTLLNSISSMGNLAKDQVKEALE 258 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 +AGI+ R E LS+++F ++N++ Sbjct: 259 EAGIDPKRRGETLSLDEFAILSNVI 283 >gi|187477205|ref|YP_785229.1| dimethyladenosine transferase [Bordetella avium 197N] gi|122064284|sp|Q2KXA2|RSMA_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115421791|emb|CAJ48302.1| dimethyladenosine transferase [Bordetella avium 197N] Length = 262 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 15/259 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKD 79 +K GQ+FL D +++ I + ++EIG G LT L+ AR ++ V+E D Sbjct: 7 RKRFGQHFLTDESVIDAIVRAIAPARDDAIVEIGPGLSALTAPLI---ARLNRLSVVEID 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L+ P +L +++ DAL VDF +F + +R++ NLPYNI + LLF+ + Sbjct: 64 RDLAARLR--KKYPPEQLSVVEADALTVDFRQF---GAGMRVVGNLPYNISSPLLFHLMG 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A + Q+EV +R+ A+ S YGRLSV+ R + +FD+ P F P P Sbjct: 119 AAD---LVRDQHFMLQREVIDRMVAEPRSADYGRLSVMLQSRYRMEKLFDVPPEAFDPPP 175 Query: 200 KVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 +V S V+ +P P P + + + AF +RRK LR+ L G+ Sbjct: 176 RVVSAVVRMVPLGPDRPQPASEAAFEAVVARAFSQRRKMLRRGLGDWAAHVPWDDIGVPP 235 Query: 258 NLRAENLSIEDFCRITNIL 276 RAE + + F R+T+ L Sbjct: 236 TARAEEVGVAQFIRLTDAL 254 >gi|146295340|ref|YP_001179111.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408916|gb|ABP65920.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 250 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 143/252 (56%), Gaps = 19/252 (7%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 ++D NI++KI + +D V+EIGAGPG LT L+ A+KV +E D++ +LK++ Sbjct: 1 MIDENIVRKIV-NFAKIDQKEVLEIGAGPGTLT-TFLSQKAKKVFAVEIDKKILNVLKEV 58 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFNWISADTWPPFW 147 Q+ + +EII D L+++ + N++S + ++ NLPY + +++LF + Sbjct: 59 C-QNLSNVEIINQDFLELNVK---NLTSTQKLCVVGNLPYYVTSQILFKLFEERNY---I 111 Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207 ES T++ QKEV +R+ A+ S YG L+V + K F +S +VFFP P+V STV+ Sbjct: 112 ESFTIMVQKEVAQRLLAKPGSKDYGILTVAMNFYCKVEDFFYVSKNVFFPRPEVDSTVLK 171 Query: 208 FIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKR-LGGE-----NLLHQAGIETNLR 260 + IP E KI F RRKT+ SL LG E ++L + ++ NLR Sbjct: 172 -VSFKEDIPDVDEKKFFKIVHACFSTRRKTILNSLSNSLGIEKAELKHILEKTSLQENLR 230 Query: 261 AENLSIEDFCRI 272 AE+LS+E F R+ Sbjct: 231 AEDLSLEHFVRL 242 >gi|58583371|ref|YP_202387.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625195|ref|YP_452567.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575373|ref|YP_001912302.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|62900457|sp|Q5GWB9|RSMA_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365863|sp|Q2NZI4|RSMA_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732641|sp|B2SPT3|RSMA_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58427965|gb|AAW77002.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369135|dbj|BAE70293.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519825|gb|ACD57770.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 262 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 133/265 (50%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73 S + KK +GQ+FL D + +I ++ G ++EIG G G +T +L GA + Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D+ L + ++ L II D L VDF + +PIR++ NLPYNI + + Sbjct: 61 TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + QKEV +R+ A S YGRLSV+ T +F + P Sbjct: 119 LFHALDHAA---VVADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 235 EAAQVRPDARAEQLEVADFIRLANV 259 >gi|299782801|gb|ADJ40799.1| Dimethyladenosine transferase [Lactobacillus fermentum CECT 5716] Length = 295 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 148/287 (51%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y I KK GQNFL + ++L I ++G VIEIG G G LT+ L A Sbjct: 12 RAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQ-AA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANL 125 +V+ +E D+ P+L D+ + + N + ++ D LK + F + + P++++ANL Sbjct: 71 GEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVKVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +LF +++ W ++ ++ QKEV +R+ A+ + YG L++ +R Sbjct: 130 PYYITSPILFALLASQVE---WAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDYRMDVK 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQSLK 242 + F++S F P+P V S ++ +P + L + + F RRK+L +LK Sbjct: 187 VAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFCLIRGCFAHRRKSLWNNLK 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + G++ +L + I++ R E LS+ DF + N + + + Sbjct: 247 TIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293 >gi|27904634|ref|NP_777760.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839464|sp|P59524|RSMA_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27904031|gb|AAO26865.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 260 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 132/256 (51%), Gaps = 13/256 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL+D ++ +I +IEIG G G LT + + K+ VIE D Sbjct: 11 KNLGQNFLVDSEVINRIINVINPKSHDFMIEIGPGLGALTYPICKI-LHKLFVIEHDNNL 69 Query: 83 FP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISA 140 +LKDIS+ +E+ +D LK +F N S +RII NLPYNI +LF Sbjct: 70 GTRLLKDISN-----IEVFVEDVLKFNFLNLINNSFKSVRIIGNLPYNISIPILFYLFKF 124 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + +FQKEV ++ A + Y RLS++ + +FD+ F+P PK Sbjct: 125 HNN---IIDMNFMFQKEVASKLLAIPGTKSYSRLSIIAQYYCDIDFLFDVVAQSFYPIPK 181 Query: 201 VTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 VTS+ + +P N + L +T AF +RRK ++ SL L ++ L + GI+ Sbjct: 182 VTSSFVRLVPRKVFNLYVRDINQLSNVTALAFQQRRKIVKNSLSSLFNDDALRKLGIDPL 241 Query: 259 LRAENLSIEDFCRITN 274 LRAENLS++ +C ++N Sbjct: 242 LRAENLSVKQYCLLSN 257 >gi|126654253|ref|ZP_01726041.1| dimethyladenosine transferase [Bacillus sp. B14905] gi|126589286|gb|EAZ83444.1| dimethyladenosine transferase [Bacillus sp. B14905] Length = 294 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 144/284 (50%), Gaps = 26/284 (9%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL Y KK +GQNFL+D NIL+ I + + IE+G G G LT+ L A Sbjct: 13 QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHADLTENSGAIEVGPGIGALTEHL-ARSA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E DQ+ P+L+D S + N + I+ D LK D E+ I I ++ANL Sbjct: 72 KKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEMLGIED-IMVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L ++ D P ++ QKEV +RITA+ + YG LS+ + KA Sbjct: 130 PYYVTTPILMKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKAE 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLK 242 + + VF P P V S VI I + P P + + L +T+ +F +RRKT+ +L+ Sbjct: 187 IAMTVPKTVFMPQPNVDSAVIRLIKYDEP-PVKVINEDFLFVVTRASFVQRRKTIYNNLQ 245 Query: 243 RLGGEN----------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G N L A IE R E L+I++F ++ + L Sbjct: 246 S-GLPNGKAQKDFILEALTAASIEPTRRGETLTIQEFGKLADAL 288 >gi|39996962|ref|NP_952913.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA] gi|62900555|sp|Q74C12|RSMA_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39983850|gb|AAR35240.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA] Length = 276 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 139/271 (51%), Gaps = 20/271 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I +K +GQNFL D ++L +IA + G ++EIG G G LT L A +++ +E Sbjct: 6 IRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQ-AGQLVAVEL 64 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLFN 136 D + P+L+ + +P+ + II+ D L +D + + P ++ ANLPYNI T +LF Sbjct: 65 DDRLVPLLRGSFAGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLFR 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + A + L L+ QKEVG R+ A S YG LSVL T + P F Sbjct: 124 LLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSFH 180 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-------- 246 P PKV S V+ F+P P + E +++ + +F RRKTL LK GG Sbjct: 181 PVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLK--GGALGVPTDG 238 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++L + GI+ R E LS+++F +T L Sbjct: 239 IRDVLARCGIDEGRRGETLSLQEFASLTKGL 269 >gi|157123560|ref|XP_001660203.1| dimethyladenosine transferase [Aedes aegypti] gi|108874371|gb|EAT38596.1| dimethyladenosine transferase [Aedes aegypti] Length = 339 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 148/291 (50%), Gaps = 25/291 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ ++ YK+ K + QNFL+D + KI ++G++ V+E+G GPG +T+ ++ Sbjct: 22 TIRDLVRLYKLRALKQLSQNFLMDERLTNKIVRAAGNIKDNYVLEVGPGPGGITRSIIRK 81 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFF---------NISS 117 +++V+EKD++F P L+ ++ + +++I++ D L+ E F + + Sbjct: 82 FPHQLVVVEKDRRFLPTLELLAEASKDFLQMDIVRGDILEYRTEMAFPDCPKTEWNDKRA 141 Query: 118 PIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 P+ +I NLP+ I TRLL NWI + W SLTL FQKEV ERI A S + Sbjct: 142 PVHLIGNLPFAISTRLLINWIREMSLRSGAWSYGRSSLTLTFQKEVAERIVAPILSEYRC 201 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFG 231 RLSV+ +KA + F I F P P V V+ IP P+ + ++K+ + F Sbjct: 202 RLSVMNQVWSKAELKFIIPGKAFVPKPDVDVGVVTIIPLKTPLTTVHFDVVEKVIRHIFS 261 Query: 232 KRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274 R+K R+ + L ++ A ++ R+ LS E+ RI Sbjct: 262 MRQKYCRRGVSNLYPPDVREDLTQLTFRMADVDPLARSFQLSTEECLRIAE 312 >gi|83025301|gb|ABB95743.1| mitochondrial transcription factor B1 [Tigriopus californicus] gi|83025303|gb|ABB95744.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 64 GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + L FQKEV ERI AQ + R Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|83583584|gb|ABC24676.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 365 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 14 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 73 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 74 GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 133 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + L FQKEV ERI AQ + R Sbjct: 134 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 193 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 194 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 253 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 254 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 310 >gi|167038742|ref|YP_001661727.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514] gi|300913673|ref|ZP_07130990.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561] gi|307723312|ref|YP_003903063.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513] gi|166852982|gb|ABY91391.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514] gi|300890358|gb|EFK85503.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561] gi|307580373|gb|ADN53772.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513] Length = 273 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 16/263 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNF+ D NIL KI +SG V+EIG G G LT+ L +KV+ E D++ + Sbjct: 13 GQNFIFDKNILAKIVIASGVALEDFVLEIGTGLGTLTEELAK-RVKKVVSFEIDRELYEA 71 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142 K+ + + N + I+ +D +K D + N P +++ANLPY I + ++ + Sbjct: 72 TKEKLNIYNNVI-IMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 F + +T+L QKEV ERI A + YG L+V ++ K ++F++ P VF P PKV Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKVD 186 Query: 203 STVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259 S+++ P+ + + + AFG+RRK L +LK LG + ++ +A +NL Sbjct: 187 SSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246 Query: 260 ----RAENLSIEDFCRITNILTD 278 R E LSIE+F + N++ D Sbjct: 247 SHQRRGETLSIEEFTALANVIYD 269 >gi|56418570|ref|YP_145888.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426] gi|297528410|ref|YP_003669685.1| dimethyladenosine transferase [Geobacillus sp. C56-T3] gi|62900466|sp|Q5L3V8|RSMA_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56378412|dbj|BAD74320.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426] gi|297251662|gb|ADI25108.1| dimethyladenosine transferase [Geobacillus sp. C56-T3] Length = 293 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 24/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL+KI + + IEIG G G LT+ L A Sbjct: 12 KEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQ-LARRA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E D + PIL D S + N + I D LK D E+ ++S + ++ANL Sbjct: 71 KKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDRM-VVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ + P + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 129 PYYVTTPIIMKLLT-ERLP--IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242 ++ + VF P P V S VI + +P P ++ ++ + +F +RRKTL +L Sbjct: 186 VIMTVPRTVFMPQPNVDSAVIRLVKRQHP-PVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244 Query: 243 R--LGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 GG E +L GI+ R E L I +F ++N L Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288 >gi|237756245|ref|ZP_04584806.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691603|gb|EEP60650.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 258 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I PKK++GQ+FL+ N+++KI + ++EIG G G LT+ +L + + +E Sbjct: 3 RIKPKKHLGQHFLISKNVIEKIVDEIDISQEDIIVEIGPGTGALTEEILLRNPKILYAVE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D +P+L++ S++ N ++I+ D V+ + + I+++ NLPYN+ + ++ Sbjct: 63 IDTTVYPVLEEKFSKYSN-FKLIKSDFFDVNLYELISDKEKIKLVGNLPYNVSSLMI--- 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I E + QKEV E++ A+ + Y LSV + + F P Sbjct: 119 IDCGFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDVKYIMSVPARFFNP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS V+ P N + ++ K F RRK ++ ++ E +L++AG+ Sbjct: 179 PPKVTSAVVKLTPKQNIVINNVKKYKNFVSHLFQNRRKMIKSKIE----EGMLNKAGVSP 234 Query: 258 NLRAENLSIEDFCRITNILTDN 279 NLRAE LS+EDF RI ++ ++ Sbjct: 235 NLRAEELSVEDFIRIFEVVEND 256 >gi|294496912|ref|YP_003560612.1| dimethyladenosine transferase [Bacillus megaterium QM B1551] gi|294346849|gb|ADE67178.1| dimethyladenosine transferase [Bacillus megaterium QM B1551] Length = 292 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 22/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL +I + + + IEIG G G LT+ L A Sbjct: 12 KEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAK-RA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125 +KV+ E DQ+ PIL D S + N ++I D LK D ++F NI + ++ANL Sbjct: 71 KKVLAFEIDQRLLPILADTLSPYSN-AKVIHQDVLKADLKGTLEQEFENIED-LMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L + + P + ++ QKEV +RI A+ + YG LS+ + T+A Sbjct: 129 PYYVTTPILMKLLE-EQIP--VRGIVVMLQKEVADRIAAKPGTKEYGSLSIAIQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI + P + ++ + +FG+RRKT+ +L Sbjct: 186 TVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNNLVN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ E L A I+ R E LSI++F ++++ L Sbjct: 246 NLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287 >gi|238782671|ref|ZP_04626701.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970] gi|238716331|gb|EEQ08313.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970] Length = 214 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 120/212 (56%), Gaps = 13/212 (6%) Query: 72 KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127 ++ VIE D+ L + HP ++L I Q DA+KV+F + ++ P+R+ NLPY Sbjct: 3 RMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFAELAELAGQPLRVFGNLPY 58 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T L+F+ S + + + QKEV R+ A NS YGRL+V+ + + Sbjct: 59 NISTPLMFHLFS---YTNAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPV 115 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245 ++ P F P+PKV S V+ IPH+N P P + L +IT +AF +RRKT+R SL L Sbjct: 116 LEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLF 175 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 176 TAEQLIELGIDPILRAENISVAQYCKLANWLS 207 >gi|328950176|ref|YP_004367511.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus hydrothermalis DSM 14884] gi|328450500|gb|AEB11401.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus hydrothermalis DSM 14884] Length = 277 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 143/278 (51%), Gaps = 26/278 (9%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++ +L Y + K GQNFL+D N+L I ++ G V E+G G G LT+ L Sbjct: 12 RTVRALLERYGLRADKRFGQNFLVDGNLLGVIVRTAQVRPGERVYEVGPGLGTLTRALAE 71 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GA KV IEKDQ+ P+L++ + + ++ DAL +++ S +ANLPY Sbjct: 72 AGA-KVTAIEKDQRLLPVLEETLAGL--NVTVVPGDALAYPWDEVPPDSL---FVANLPY 125 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T LL + A+ + L +L QKEV +R+ A+ + YG L++ + + + Sbjct: 126 NISTPLLTAVLRANRF----RRLVVLVQKEVADRLAARPATEAYGLLTLRAQYHARVERV 181 Query: 188 FDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 D P F+P P VTST++ +P +P +L ++ + AF +RRKTLR++L+ Sbjct: 182 RDFPPQAFYPQPNVTSTLVRLESKGVPD-DP------ALFRLVEAAFAQRRKTLRKNLEA 234 Query: 244 LGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276 G L G++ +R E L +E F R+ L Sbjct: 235 AGYARERVLAALSALGLDPRVRGEALDLEAFQRLKAAL 272 >gi|227873154|ref|ZP_03991445.1| dimethyladenosine transferase [Oribacterium sinus F0268] gi|227840985|gb|EEJ51324.1| dimethyladenosine transferase [Oribacterium sinus F0268] Length = 312 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 16/264 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L I + VIEIG G G LT+ L A +VI IE D + Sbjct: 35 KKQFGQNFLIDASVLDHIISYAKIQKEDLVIEIGPGIGTLTEALCE-HAGQVIAIEIDDK 93 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PIL++ + N ++ D LKVDF + S ++++ANLPY I T +L + + Sbjct: 94 LIPILEENLAAKEN-FRLLHQDVLKVDFTELLKEYPGFSSVKVVANLPYYITTPILLSLL 152 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P S+T++ QKEV ER+ A + YG LS+ + +K ++ ++ PH F P Sbjct: 153 E-KKLP--LSSITVMVQKEVAERMQAGPGTKDYGALSLAVQYYSKPEIVQEVPPHCFIPR 209 Query: 199 PKVTSTVIHF-IPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ------SLKRLGGENLL 250 PKV+S VIH I +P+ C E L K + +F +RRKTL SL + +++L Sbjct: 210 PKVSSMVIHLSIYKESPVECENPEYLFKTIKASFMQRRKTLVNALSAGLSLDKEVIKSVL 269 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 N+R E LS+++F I++ Sbjct: 270 SALSYPENVRGETLSLDEFAEISD 293 >gi|308051068|ref|YP_003914634.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799] gi|307633258|gb|ADN77560.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799] Length = 269 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 138/260 (53%), Gaps = 9/260 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D++++ +I + + ++EIG G G LT+ + + V+E D+ Sbjct: 12 RKRFGQNFLHDMSVIDRIVAAIRPDNDHIMVEIGPGLGALTEPVAD-QVEHLNVVELDRD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-SA 140 L+ + +L I + DALK DF + +++ NLPYNI T L+F+ + Sbjct: 71 LAERLRH-QPRWGQKLTIHEGDALKFDFNQLAEPGKRMKVFGNLPYNISTPLMFHLFETV 129 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D+ ES+ + QKEV ER+ A +YGRLSV+ + + + ++ P F P PK Sbjct: 130 DSV----ESMHFMLQKEVVERLCAGPGHKNYGRLSVMAQYYCQCIPVLEVPPGCFTPPPK 185 Query: 201 VTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +PH+ P P + +L+K+ AF RRKTLR + K ++ GI+ Sbjct: 186 VDSAVVRLVPHVEKPYPATNVATLEKVVATAFTMRRKTLRNNFKGQLNDDDFAALGIDPT 245 Query: 259 LRAENLSIEDFCRITNILTD 278 LR E +S+ ++ + N +++ Sbjct: 246 LRPERISLPEYVAMANYISE 265 >gi|213029736|ref|ZP_03344183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 212 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 115/211 (54%), Gaps = 13/211 (6%) Query: 75 VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIG 130 VIE D+ L+ HP +L I Q DA+ ++F E + P+R+ NLPYNI Sbjct: 3 VIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRVFGNLPYNIS 58 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T L+F+ S + + + QKEV R+ A NS YGRLSV+ + + + ++ Sbjct: 59 TPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEV 115 Query: 191 SPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R SL L Sbjct: 116 PPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVE 175 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 176 TLTEMGIDPAMRAENISVAQYCQMANYLSEN 206 >gi|323697933|ref|ZP_08109845.1| dimethyladenosine transferase [Desulfovibrio sp. ND132] gi|323457865|gb|EGB13730.1| dimethyladenosine transferase [Desulfovibrio desulfuricans ND132] Length = 260 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 135/257 (52%), Gaps = 23/257 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI +KI ++ G ++IEIG G G LT+ L+ GAR + V+E D Sbjct: 11 KKSLGQNFLTDRNICRKIVDALAPTPGASIIEIGPGQGALTEHLVETGAR-LRVVEMDDD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 L D + LE+I+ DALK + + N P+RII NLPYN+G++L+++ +S Sbjct: 70 ----LADRLEERWPDLEVIRADALKFPWAE-LNAEGPVRIIGNLPYNVGSKLIWDIVSRV 124 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 +T E + Q EV R+TA+ S YG L+ + +F + P VF P PK Sbjct: 125 ET----LERAVFMVQHEVALRLTAEPGSKAYGGLTAWVRNFSDTRYLFKVPPTVFRPRPK 180 Query: 201 VTSTVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQ 252 V S V+ F +P+P + L ++ + F +RRK + LK+ E + Sbjct: 181 VDSAVVRF----DPLPAGARPEDPDRLAELIKLLFQQRRKQISTILKKRMTPAVEQWFRE 236 Query: 253 AGIETNLRAENLSIEDF 269 G+ +LR ENL+ F Sbjct: 237 EGVSPSLRPENLTPTQF 253 >gi|30018312|ref|NP_829943.1| dimethyladenosine transferase [Bacillus cereus ATCC 14579] gi|75759603|ref|ZP_00739689.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218232555|ref|YP_002364891.1| dimethyladenosine transferase [Bacillus cereus B4264] gi|218895177|ref|YP_002443588.1| dimethyladenosine transferase [Bacillus cereus G9842] gi|296500873|ref|YP_003662573.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171] gi|33516920|sp|Q81JA5|RSMA_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729753|sp|B7ISV1|RSMA_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729754|sp|B7HIK9|RSMA_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29893852|gb|AAP07144.1| Dimethyladenosine transferase [Bacillus cereus ATCC 14579] gi|74492894|gb|EAO56024.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218160512|gb|ACK60504.1| dimethyladenosine transferase [Bacillus cereus B4264] gi|218541640|gb|ACK94034.1| dimethyladenosine transferase [Bacillus cereus G9842] gi|296321925|gb|ADH04853.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171] gi|326937833|gb|AEA13729.1| dimethyladenosine transferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 292 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68 K I+ Y KK +GQNFL+D N+L +I + + GS G IEIG G G LT+ L Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIAN 124 A+KV+ E DQ+ PIL + + + N + +I D LK D + FN + ++AN Sbjct: 68 RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242 + + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286 >gi|307265678|ref|ZP_07547231.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919322|gb|EFN49543.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 273 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 142/263 (53%), Gaps = 16/263 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNF+ D NIL KI +SG V+EIG G G LT+ L + +KVI E D++ + Sbjct: 13 GQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKM-VKKVISFEIDRELYEA 71 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142 K+ N + II +D +KVD K N P +++ANLPY I + ++ + Sbjct: 72 TKE-KLNIYNNVIIINEDIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 F + +T+L QKEV ERI A + YG L+V ++ K +F++ P VF P PKV Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKVD 186 Query: 203 STVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259 S+++ I + + E L + + AFG+RRK L +LK LG + ++ +A +NL Sbjct: 187 SSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246 Query: 260 ----RAENLSIEDFCRITNILTD 278 R E LSIE+F + N++ D Sbjct: 247 SPQRRGETLSIEEFAALANVIYD 269 >gi|269797689|ref|YP_003311589.1| dimethyladenosine transferase [Veillonella parvula DSM 2008] gi|269094318|gb|ACZ24309.1| dimethyladenosine transferase [Veillonella parvula DSM 2008] Length = 284 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ KI ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDKIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGA-D 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L D + N + II D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVL-DTTLASYNNVRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + P E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P VTS+VI + P+ E L ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277 >gi|312372402|gb|EFR20370.1| hypothetical protein AND_20209 [Anopheles darlingi] Length = 353 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 26/292 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ ++ Y++ K + QNFL+D + KI ++G + V+E+G GPG +T+ ++ Sbjct: 23 TIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGKIRDHHVLEVGPGPGGITRSIIRQ 82 Query: 69 GARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFF----------NIS 116 R ++V+EKD++F P ++ ++ SQ R++I++ D L E F + Sbjct: 83 HPRHLVVVEKDRRFMPTMEMLAEVSQPFMRMDIVRGDILDYRIEGAFPDCEPHDWMDPVP 142 Query: 117 SPIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 +P+ +I NLP+ I TRLL NW + W SLTL FQKEV ERI A S Sbjct: 143 APVHLIGNLPFAISTRLLINWLRDMSLRTGAWHYGRASLTLTFQKEVAERIVAPILSDQR 202 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAF 230 RLSV+ +K + F IS F P P+V V+ +P P+ ++++K+ + F Sbjct: 203 CRLSVMNQIWSKPDLRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVIRHIF 262 Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274 R+K R+ + L E ++ ++ R+ LS+++ RI Sbjct: 263 SMRQKYCRRGVSNLYPPTVRDELTELTFRKSSVDPLSRSFQLSVDECLRIVE 314 >gi|171060583|ref|YP_001792932.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6] gi|226732592|sp|B1Y7L9|RSMA_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170778028|gb|ACB36167.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6] Length = 269 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 15/259 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D ++L +I + G ++EIG G G +T ++ +++ V+E Sbjct: 2 KHIPRKRFGQHFLADQSVLDRIVQLIDPQPGEALVEIGPGLGAMTDPVVE-RCKRLTVVE 60 Query: 78 KDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 D +D++++ R L +I+ D LKVDF + P+R+I NLPYNI + +L Sbjct: 61 LD-------RDLAARLRKRPELTVIESDVLKVDFTALAQAAGRPVRVIGNLPYNISSPIL 113 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV +R+ + S YGRLSV+ WR + + D+ P Sbjct: 114 FHLLEQVAS---VQDQHFMLQKEVVDRMASAPGSKDYGRLSVMLQWRYQIESLLDVPPES 170 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S ++ +P P + L ++ AF +RRK LR +L R E H Sbjct: 171 FDPPPRVDSAIVRMLPLAQPPAVDPKLLGELVTVAFSQRRKMLRNTLGRW-LEAREHGGA 229 Query: 255 IETNLRAENLSIEDFCRIT 273 + RAE + + +F +T Sbjct: 230 FDLTRRAEEVPVAEFVALT 248 >gi|163938049|ref|YP_001642933.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4] gi|226729756|sp|A9VN54|RSMA_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|163860246|gb|ABY41305.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4] Length = 292 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68 K I+ Y KK +GQNFL+D N+L +I + + GS G IEIG G G LT+ L Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIAN 124 A+KV+ E DQ+ PIL + + + N + +I D LK D F + F + ++AN Sbjct: 68 RAKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242 + + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286 >gi|118475813|ref|YP_892964.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al Hakam] gi|196047365|ref|ZP_03114578.1| dimethyladenosine transferase [Bacillus cereus 03BB108] gi|225862093|ref|YP_002747471.1| dimethyladenosine transferase [Bacillus cereus 03BB102] gi|166221644|sp|A0R8B4|RSMA_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807859|sp|C1ESX0|RSMA_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118415038|gb|ABK83457.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al Hakam] gi|196021767|gb|EDX60461.1| dimethyladenosine transferase [Bacillus cereus 03BB108] gi|225788520|gb|ACO28737.1| dimethyladenosine transferase [Bacillus cereus 03BB102] Length = 292 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 24/284 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68 K I+ Y KK +GQNFL+D N+L +I + + GS G IEIG G G LT+ L Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIAN 124 A+KV+ E DQ+ PIL + + + N + +I D LK D F + F + ++AN Sbjct: 68 RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL--KKITQEAFGKRRKTLRQSLK 242 + + VF P P V S +I + P+ + + ++ + +F +RRKTL +L Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLS 243 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + +L + GI+ R E LSIE+F ++N L Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287 >gi|74318358|ref|YP_316098.1| dimethyladenosine transferase [Thiobacillus denitrificans ATCC 25259] gi|119365860|sp|Q3SGF7|RSMA_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|74057853|gb|AAZ98293.1| ribosomal RNA 16S rRNA dimethylase [Thiobacillus denitrificans ATCC 25259] Length = 255 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 132/259 (50%), Gaps = 11/259 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNFL+D I+ I + G TV+EIG G G LT+ LL + +E D+ Sbjct: 4 PRKRFGQNFLIDDGIVHAIVNAIHPQAGETVVEIGPGLGALTRPLLE-RLPHLHAVELDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + P RL + DALK DF ++ +RI+ NLPYNI T LLF+ + Sbjct: 63 DIIARLR--RAWPPERLTLHAGDALKFDFG---SLGDDLRIVGNLPYNISTPLLFHLLE- 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + P + + QKEV ER+ A + YGRLS++ R + D+ P F P PK Sbjct: 117 --FAPRIRDMHFMLQKEVVERMVASPATADYGRLSIMLQRRFHMEWLLDVPPTAFDPPPK 174 Query: 201 VTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ IP +P E+L ++ AF +RRKTLR +L L GI+ Sbjct: 175 VESAVVRLIPKSTAEVPSVDEALFARVVAAAFAQRRKTLRNTLSALMRPEDFVALGIDPG 234 Query: 259 LRAENLSIEDFCRITNILT 277 LRAE L + D+ IT L Sbjct: 235 LRAEALHVADYEAITAYLA 253 >gi|308505052|ref|XP_003114709.1| hypothetical protein CRE_28029 [Caenorhabditis remanei] gi|308258891|gb|EFP02844.1| hypothetical protein CRE_28029 [Caenorhabditis remanei] Length = 363 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 148/294 (50%), Gaps = 28/294 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG GPG +T+ +L Sbjct: 10 ALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVHENDWVIEIGPGPGGITRAILEA 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----------- 117 GA ++ V+E D +F P L+ ++ +R+ I DAL+ + + + Sbjct: 70 GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKAETQRPKSVDWNDS 129 Query: 118 ---PIRIIANLPYNIGTRLLFNWISADTWP-PFWE----SLTLLFQKEVGERITAQKNSP 169 P+ +I NLP+NI + L+ ++ ++ W+ LTL FQ EV +R+ + Sbjct: 130 SLPPMHVIGNLPFNIASPLIIKYLRDMSYQRGVWQYGRVPLTLTFQLEVAKRLCSPIACD 189 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228 R+S++ + T+ M+F IS F P P+V V+ F+P P + E L+K+ ++ Sbjct: 190 TRSRISIMAQYVTEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 249 Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274 F R+K + + LK L + LL + ++ + L +E F + Sbjct: 250 VFHYRQKYVEKGLKTLYPPEMEDEMADELLKKCRVDPTTTSIRLGMEQFADLAE 303 >gi|196228205|ref|ZP_03127072.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428] gi|196227608|gb|EDY22111.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428] Length = 460 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 143/280 (51%), Gaps = 13/280 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K +++ L+ + P K +GQNFL D N+ + I +E+G G G LT+ Sbjct: 2 KLSTIQASLNQLGMQPTKSLGQNFLHDQNLAEWIVAQLDIQPEEAWVELGPGLGALTEFA 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L R +VIEKD + L++ + P LEII DA + D + F PI+++ NL Sbjct: 62 LARSPRG-LVIEKDGRLAGFLRE---RFPA-LEIIHGDASEFDVRELF-ARGPIKVLGNL 115 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + +++LF + P +L QKE+ ER++A + YG L++L G R K Sbjct: 116 PYYVSSQILFAFTGE---PSPVSALIFTLQKELAERLSAGPWTKEYGALTLLVGRRWKVK 172 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSL-- 241 + + VF P+PKV S ++ P +P C E ++ ++ F +RRK LR++L Sbjct: 173 YLRTLPGSVFMPAPKVDSAIVLLTPRPAGEVPACDGELFTRLVKQGFAQRRKQLRKNLAG 232 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + L L G+E RAE LS+E + +TN +T + D Sbjct: 233 RNLDWPALCQHLGVEETTRAEELSLEQWIALTNFVTKSSD 272 >gi|221633286|ref|YP_002522511.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159] gi|221155685|gb|ACM04812.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159] Length = 297 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 146/281 (51%), Gaps = 18/281 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L I P+K +GQ+FL D I+++I E++ V+EIG G G LT+ L Sbjct: 27 VRQVLRELGIRPRKALGQHFLHDRAIVRRIVETAQLPPDALVVEIGPGLGILTEE-LARW 85 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI +E D + L + H + I+ DAL+VD P ++ANLPYN+ Sbjct: 86 ARSVIAVELDARLAEQLAE--RFHGTNVRIVHGDALEVDLAALTG-QCPYFVVANLPYNV 142 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +L +++D P E L ++ Q+EV ER+ A+ + Y L VL + + F Sbjct: 143 ATPILERLLTSDHPP---ERLVVMVQREVAERMAARPPAMSY--LGVLVQFFALPRVAFR 197 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 I P F P PKV S V+ P+P +S + + F +RRK L +L G + Sbjct: 198 IGPGAFTPPPKVESAVVVLDRRTPPLPKHHWDSFFALVRAGFAQRRKMLLNALATATGMD 257 Query: 249 ------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 LL +AGIE + RAE L++E++ R+ +L ++D+A Sbjct: 258 KEMLRALLQRAGIEPSRRAETLTVEEWLRLWRVL--HEDVA 296 >gi|30260231|ref|NP_842608.1| dimethyladenosine transferase [Bacillus anthracis str. Ames] gi|42779120|ref|NP_976367.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987] gi|47525294|ref|YP_016643.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47569890|ref|ZP_00240557.1| dimethyladenosine transferase [Bacillus cereus G9241] gi|49183075|ref|YP_026327.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne] gi|49477600|ref|YP_034395.1| dimethyladenosine transferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145175|ref|YP_081654.1| dimethyladenosine transferase [Bacillus cereus E33L] gi|65317501|ref|ZP_00390460.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Bacillus anthracis str. A2012] gi|165872549|ref|ZP_02217181.1| dimethyladenosine transferase [Bacillus anthracis str. A0488] gi|167635072|ref|ZP_02393389.1| dimethyladenosine transferase [Bacillus anthracis str. A0442] gi|167641541|ref|ZP_02399789.1| dimethyladenosine transferase [Bacillus anthracis str. A0193] gi|170688890|ref|ZP_02880092.1| dimethyladenosine transferase [Bacillus anthracis str. A0465] gi|170707547|ref|ZP_02898000.1| dimethyladenosine transferase [Bacillus anthracis str. A0389] gi|177655321|ref|ZP_02936850.1| dimethyladenosine transferase [Bacillus anthracis str. A0174] gi|190568974|ref|ZP_03021875.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I] gi|196036349|ref|ZP_03103746.1| dimethyladenosine transferase [Bacillus cereus W] gi|196041767|ref|ZP_03109057.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99] gi|206977937|ref|ZP_03238824.1| dimethyladenosine transferase [Bacillus cereus H3081.97] gi|217957617|ref|YP_002336159.1| dimethyladenosine transferase [Bacillus cereus AH187] gi|218901242|ref|YP_002449076.1| dimethyladenosine transferase [Bacillus cereus AH820] gi|222093811|ref|YP_002527860.1| dimethyladenosine transferase [Bacillus cereus Q1] gi|227812714|ref|YP_002812723.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684] gi|229601390|ref|YP_002864692.1| dimethyladenosine transferase [Bacillus anthracis str. A0248] gi|254682332|ref|ZP_05146193.1| dimethyladenosine transferase [Bacillus anthracis str. CNEVA-9066] gi|254724182|ref|ZP_05185967.1| dimethyladenosine transferase [Bacillus anthracis str. A1055] gi|254733577|ref|ZP_05191298.1| dimethyladenosine transferase [Bacillus anthracis str. Western North America USA6153] gi|254744655|ref|ZP_05202334.1| dimethyladenosine transferase [Bacillus anthracis str. Kruger B] gi|254756360|ref|ZP_05208389.1| dimethyladenosine transferase [Bacillus anthracis str. Vollum] gi|254762416|ref|ZP_05214258.1| dimethyladenosine transferase [Bacillus anthracis str. Australia 94] gi|300119136|ref|ZP_07056837.1| dimethyladenosine transferase [Bacillus cereus SJ1] gi|301051777|ref|YP_003789988.1| dimethyladenosine transferase [Bacillus anthracis CI] gi|33516921|sp|Q81W00|RSMA_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900500|sp|Q63HJ1|RSMA_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900530|sp|Q6HPX5|RSMA_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900550|sp|Q73FG7|RSMA_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729752|sp|B7JK47|RSMA_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729755|sp|B7HPV2|RSMA_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807857|sp|C3P9I6|RSMA_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807858|sp|C3LJ13|RSMA_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807860|sp|B9IZC4|RSMA_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|30253552|gb|AAP24094.1| dimethyladenosine transferase [Bacillus anthracis str. Ames] gi|42735035|gb|AAS38975.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987] gi|47500442|gb|AAT29118.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47553424|gb|EAL11808.1| dimethyladenosine transferase [Bacillus cereus G9241] gi|49177002|gb|AAT52378.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne] gi|49329156|gb|AAT59802.1| dimethyladenosine transferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978644|gb|AAU20194.1| dimethyladenosine transferase [Bacillus cereus E33L] gi|164711677|gb|EDR17222.1| dimethyladenosine transferase [Bacillus anthracis str. A0488] gi|167510526|gb|EDR85924.1| dimethyladenosine transferase [Bacillus anthracis str. A0193] gi|167529546|gb|EDR92296.1| dimethyladenosine transferase [Bacillus anthracis str. A0442] gi|170127543|gb|EDS96417.1| dimethyladenosine transferase [Bacillus anthracis str. A0389] gi|170667114|gb|EDT17875.1| dimethyladenosine transferase [Bacillus anthracis str. A0465] gi|172080162|gb|EDT65255.1| dimethyladenosine transferase [Bacillus anthracis str. A0174] gi|190559898|gb|EDV13882.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I] gi|195990979|gb|EDX54950.1| dimethyladenosine transferase [Bacillus cereus W] gi|196027387|gb|EDX66004.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99] gi|206743843|gb|EDZ55263.1| dimethyladenosine transferase [Bacillus cereus H3081.97] gi|217065788|gb|ACJ80038.1| dimethyladenosine transferase [Bacillus cereus AH187] gi|218538262|gb|ACK90660.1| dimethyladenosine transferase [Bacillus cereus AH820] gi|221237858|gb|ACM10568.1| dimethyladenosine transferase [Bacillus cereus Q1] gi|227006542|gb|ACP16285.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684] gi|229265798|gb|ACQ47435.1| dimethyladenosine transferase [Bacillus anthracis str. A0248] gi|298723458|gb|EFI64199.1| dimethyladenosine transferase [Bacillus cereus SJ1] gi|300373946|gb|ADK02850.1| dimethyladenosine transferase [Bacillus cereus biovar anthracis str. CI] gi|324324031|gb|ADY19291.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 292 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68 K I+ Y KK +GQNFL+D N+L +I + + GS G IEIG G G LT+ L Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIAN 124 A+KV+ E DQ+ PIL + + + N + +I D LK D F + F + ++AN Sbjct: 68 RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242 + + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286 >gi|226309677|ref|YP_002769571.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599] gi|226092625|dbj|BAH41067.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599] Length = 297 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 21/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D NIL I + IEIG G G LT+ L A Sbjct: 16 KEILEKYGFAFKKSLGQNFLIDTNILHNIVSEADLTKEKGAIEIGPGIGALTEQ-LGRAA 74 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126 +KV+ IE DQ+ PIL+D S + N +E++ D L +D +K + ++ANLP Sbjct: 75 KKVMAIEIDQRLLPILQDTLSPYEN-IEVVHGDVLGLDLKKLIEEKMTGVEKLSVVANLP 133 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + + P E++ ++ QKEV ERI A+ + YG LSV + + Sbjct: 134 YYVTTPILMKLLE-ERLP--LENIVVMIQKEVAERIAAKPGTKDYGSLSVAAQFYADTEV 190 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241 + VF P P V S VI P P ++ ++ + +F +RRKTL +L Sbjct: 191 AMIVPASVFIPRPNVDSAVIRLKVRDRP-PVEVDDQDVFFRVVRCSFAQRRKTLLNNLMN 249 Query: 242 ----KRLGGE--NLLHQAGIETNLRAENLSIEDFCRITN 274 K E +L GI+ R E LS+++F R+ N Sbjct: 250 GLFPKTQKDEVIQMLTDIGIDPTRRGETLSLDEFARLAN 288 >gi|118792585|ref|XP_320403.3| AGAP012129-PA [Anopheles gambiae str. PEST] gi|116116968|gb|EAA00207.3| AGAP012129-PA [Anopheles gambiae str. PEST] Length = 424 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 146/292 (50%), Gaps = 26/292 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ ++ Y++ K + QNFL+D + KI ++G++ V+E+G GPG +T+ ++ Sbjct: 107 TIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGNIRDHYVLEVGPGPGGITRSIIRQ 166 Query: 69 GARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFF----------NIS 116 R ++V+EKD++F P ++ ++ +Q R++I+Q D L + F Sbjct: 167 NPRHLVVVEKDRRFMPTMEMLAEVAQPFMRMDIVQGDILDYRVAEAFPDCPPHDWMDRKR 226 Query: 117 SPIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 +P+ +I NLP+ I TRLL NW + W SLTL FQKEV ERI A S Sbjct: 227 APVHLIGNLPFAISTRLLINWLRDMSLRTGAWSYGRASLTLTFQKEVAERIVAPILSDQR 286 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAF 230 RLSV+ + + F IS F P P+V V+ +P P+ ++++K+ + F Sbjct: 287 CRLSVMNQIWSTPELRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVVRHIF 346 Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274 R+K R+ + L E +A ++ R+ LS+ + RI Sbjct: 347 SMRQKYCRRGVANLYPPAVREELTEQTFKRADVDPLARSFQLSVAECLRIVE 398 >gi|114331217|ref|YP_747439.1| dimethyladenosine transferase [Nitrosomonas eutropha C91] gi|122313917|sp|Q0AGQ8|RSMA_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|114308231|gb|ABI59474.1| dimethyladenosine transferase [Nitrosomonas eutropha C91] Length = 256 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 137/257 (53%), Gaps = 14/257 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78 IP++ GQ+FL+D +I+ +I L G +IEIG G G LTQ LL L + I +++ Sbjct: 4 IPRRRFGQHFLVDHHIIAEIIHIICPLPGDRMIEIGPGLGALTQPLLNNLDTLQAIELDR 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D I+ +S + +L I DALK DF + +RI+ NLPYNI T LLF+ Sbjct: 64 D-----IVDYLSRNYAEKLVIHNVDALKFDFSA---LGEGLRIVGNLPYNISTPLLFHL- 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + Q EV ER+ AQ ++P YGRLS++ R + M + F P Sbjct: 115 --SRFSNLIIDMHFMLQLEVVERMVAQPSTPDYGRLSLMLQNRFEMEQMLIVPAEAFNPP 172 Query: 199 PKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S ++ P + P IP LE L ++ AF +RRKTLR +L+ Q I+ Sbjct: 173 PRVQSAIVCMRPRVVPVIPFGLEKLFGEMVLAAFSQRRKTLRNTLRHYLTIKDFDQLRID 232 Query: 257 TNLRAENLSIEDFCRIT 273 LRAENLS+E + IT Sbjct: 233 PGLRAENLSLEQYSAIT 249 >gi|320159790|ref|YP_004173014.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1] gi|319993643|dbj|BAJ62414.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1] Length = 305 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 154/289 (53%), Gaps = 20/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 +N + +L + + P+K +GQNFL D IL++I ES+ V+EIG G G+LT Sbjct: 23 LNLPPLPVAALLRSHGLAPRKSLGQNFLTDPAILRRIVESAELPPQAEVLEIGPGLGSLT 82 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 ++L + AR+V+ +E D P+L ++ S + N +E++ D L+ D + + S+ ++ Sbjct: 83 RVLAQV-ARRVVAVELDSTLIPLLDEVVSPYGN-VEVLHGDILQFDPARLMS-SAGYFVV 139 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 AN+PY I + ++ + + A P + + L Q+EV ERI A LSV Sbjct: 140 ANIPYYITSAVMRHLLEASIRP---QRVVLTIQREVAERICAVPGEMSLLALSVQVYGAP 196 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLR 238 + T+ I F+P PKV S V+ L+P P LE ++ + F ++RKTLR Sbjct: 197 RVTLR--IPAGAFYPPPKVDSAVVRV--DLSPQPRIPAEQLEIFFRLIRAGFSQKRKTLR 252 Query: 239 QSLKR-LG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +L LG E+LL QAGI+ N RAE+L++E++ + + ++ Sbjct: 253 NALSSGLGWKGERAESLLRQAGIDPNRRAESLALEEWALLVDAYVKAEE 301 >gi|319778500|ref|YP_004129413.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9] gi|317108524|gb|ADU91270.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9] Length = 259 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 19/264 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D ++ +I V+EIG G LT +LL+ + VIE D+ Sbjct: 6 RKRFGQHFLTDQSVPDEIVRKLSLNASDCVVEIGPGLSALTNVLLS-KLNHLYVIEIDRD 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + ++L +I+ D L VDF F +P+RI+ NLPYNI + +LF+ + Sbjct: 65 LAAKLR--KTHDESKLTVIESDVLDVDFSIF---PTPLRIVGNLPYNISSPILFHLLK-- 117 Query: 142 TWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +S+ + QKEV +R+ A+ S YGRLSV+ R K + D+ P F P Sbjct: 118 ----YADSVVDQHFMLQKEVVDRMVAKPGSSEYGRLSVMLQERYKMHSILDVPPEAFTPP 173 Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P + P P + K+ Q+AF +RRK LR LK + I Sbjct: 174 PKVDSAVVKMLPLASDRPKPKSYDVFSKVVQQAFSQRRKMLRGVLKSYDID--WEFLNIN 231 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 LRAE+L ++D+ ++++ + + + Sbjct: 232 EALRAEDLGVDDYIKLSDFILEKR 255 >gi|260888713|ref|ZP_05899976.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] gi|330839885|ref|YP_004414465.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] gi|260861582|gb|EEX76082.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] gi|329747649|gb|AEC01006.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] Length = 288 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 144/278 (51%), Gaps = 15/278 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + + K +GQNFL+D +++K I ++ +G V+EIG G G LTQ LL GA Sbjct: 13 RHILKAFGLRASKRLGQNFLVDGSVVKDIVAAAEIEEGDRVLEIGPGIGTLTQGLLEAGA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V +E D++ +L + + + + L I+ D LK D + P ++ ANLPY I Sbjct: 73 H-VTAVELDKKLPAVLAETLAAY-DHLRIVPGDILKTDIRALME-NQPFKVAANLPYYIT 129 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +L + + P +T++ QKEV ER+ A S YG LSV + T+ ++ ++ Sbjct: 130 TPILLALL--EQHLPITHIVTMV-QKEVAERMIAAPGSKIYGALSVAVQYHTEPRIVREV 186 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG- 246 +P F P+P+V S+VI P P + + ++ + +FG+RRKTL +L G Sbjct: 187 APRSFIPAPEVASSVIACKKRGKP-PVEVTDERMFFRVARASFGQRRKTLANALLGTGAS 245 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L A I+ R E LS+ +F R+ + + Q Sbjct: 246 KDAVRRALDAAAIDEKRRGETLSLAEFARLADAFSAMQ 283 >gi|260663712|ref|ZP_05864600.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN] gi|260551763|gb|EEX24879.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN] Length = 295 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 147/287 (51%), Gaps = 22/287 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y I KK GQNFL + ++L I ++G VIEIG G G LT+ L A Sbjct: 12 RAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQ-AA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANL 125 +V+ +E D+ P+L D+ + + N + ++ D LK + F + + P++++ANL Sbjct: 71 GEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVKVVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +LF +++ W ++ ++ QKEV +R+ A+ + YG L++ +R Sbjct: 130 PYYITSPILFALLASQVE---WAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDYRMDVK 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQSLK 242 + F++S F P+P V S ++ +P + L + + F RRK+L +LK Sbjct: 187 VAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSLWNNLK 246 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + G++ +L + I+ R E LS+ DF + N + + + Sbjct: 247 TIVGKDEDRLGKVKEVLDRLEIDPQTRPERLSLVDFINLANAMHEKK 293 >gi|332283296|ref|YP_004415207.1| dimethyladenosine transferase [Pusillimonas sp. T7-7] gi|330427249|gb|AEC18583.1| dimethyladenosine transferase [Pusillimonas sp. T7-7] Length = 261 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 129/260 (49%), Gaps = 11/260 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+FL D ++ I V+EIG G LT LL + + V+E D+ Sbjct: 6 RKRFGQHFLTDDGVVDAIVRGIDPRHDDAVVEIGPGLSALTGPLLNV-LDHLTVVEIDRD 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ P RL +I+ DAL VDF ++ S +RI+ NLPYNI + LLF+ +++ Sbjct: 65 LAARLR--QGHKPERLTVIEGDALTVDFS---SLGSGLRIVGNLPYNISSPLLFHLMASA 119 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + Q+EV +R+ AQ +S YGRLSV+ R + +FD+ P F P P+V Sbjct: 120 E---HVRDQHFMLQREVIDRMVAQPSSGDYGRLSVMLQSRYRMHKLFDVPPEAFDPPPRV 176 Query: 202 TSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S V+ +P P ++ +++ AF +RRK LR+ L GI Sbjct: 177 VSAVVRMAPLPDTRQKPKSGKAFEQVVARAFAQRRKMLRRGLADWAPSIDWDALGIPETA 236 Query: 260 RAENLSIEDFCRITNILTDN 279 RAE LS+ F +T+ L D Sbjct: 237 RAEELSVSQFMALTDHLLDK 256 >gi|160939614|ref|ZP_02086962.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC BAA-613] gi|158437405|gb|EDP15169.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC BAA-613] Length = 292 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 150/290 (51%), Gaps = 21/290 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++++ I+ Y+ +K GQNFL+D ++L KI ++G V+EIG G G + Sbjct: 3 TLGNPKNTIE-IIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITGDDCVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L A KV+ +E D PIL + + N + +I D LK+D + +N P Sbjct: 62 TQYLAE-HAGKVVAVEIDTNLLPILDETLKGYSN-VTVINSDILKLDMNQLVDEYNDGRP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ ++ +++T++ QKEV +R+ S YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFESNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRK 235 + K ++ ++ P+ F P P V S VI + P P ++ + ++ + +F +RRK Sbjct: 177 QYYAKPYIVANVPPNCFIPRPNVGSAVIRLTRYKEP-PVQVDEPGVMFRLIRASFNQRRK 235 Query: 236 TLRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277 TL+ L E + + G+ ++R E L++E F ++N T Sbjct: 236 TLQNGLNNSPEVPYTKEQIAVAIESLGVPASVRGEALTLEQFAGLSNYFT 285 >gi|326333241|ref|ZP_08199488.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1] gi|325948885|gb|EGD40978.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1] Length = 299 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 19/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++++ S + P K GQNF++D N +++I SG V+E+G G G+LT +L G Sbjct: 15 VRSLASELDLRPTKQRGQNFVIDANTVRRIVRESGVDASDVVVEVGPGLGSLTLAILETG 74 Query: 70 ARKVIVIEKDQ---QFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 AR V IE D+ + P +++ + + +I+ DAL+VD P ++ANL Sbjct: 75 AR-VTAIEIDEVLAERLPRTIEEYAPDQADAFSLIRADALRVD---SVPGPPPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + +S P L ++ Q EV +R+ A+ S YG SV W Sbjct: 131 PYNVSVPVLLHLMS--LLPSLRHGL-VMVQAEVADRLAAKPGSKVYGVPSVKAAWYADVR 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR 243 I +VF+P+P V S ++++ H P E + + AF +RRK LR LK Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVYW-SHREPPSTEVSREEVFAVVDAAFAQRRKALRGVLKP 246 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G E L AGI+ R E+L+I DF RIT L Sbjct: 247 LAGSADAAEKALVAAGIDPLARGESLTIADFVRITESL 284 >gi|39939217|ref|NP_950983.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] gi|62900544|sp|Q6YPJ4|RSMA_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39722326|dbj|BAD04816.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] Length = 268 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 142/262 (54%), Gaps = 19/262 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D+N+L KI + S+ V+EIG G G LT++++ A+ V+ E D Sbjct: 6 KKKYGQNFLTDVNLLNKIV-TKASITDKNVLEIGPGKGALTKIIVP-QAKHVLAYEIDAT 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 P L + ++ N + II DD LK DF+ +F+ +S + +I NLPY I + +LF Sbjct: 64 LKPFL---NFENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I P T++ QKEVG R+ AQ N+ +Y LSV+ + + ++ H+FFP Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLH--- 251 +PKV S VI + N P L+ K + +F ++RKTL +L L E ++ Sbjct: 177 APKVDSIVIKLTKNNNICPTFLQQFIKFVKASFKQKRKTLLNNLSCQFLLSKETIIPFFL 236 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 Q I +RAE +++E F ++T Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258 >gi|152973889|ref|YP_001373406.1| dimethyladenosine transferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189028800|sp|A7GJV3|RSMA_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|152022641|gb|ABS20411.1| dimethyladenosine transferase [Bacillus cytotoxicus NVH 391-98] Length = 292 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 20/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K I+ Y KK +GQNFL+D N+L +I + + IEIG G G LT+ L A Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDYAEIGPKGGAIEIGPGIGALTEQLAK-RA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 +KV+ E DQ+ PIL + + + N + II D LK + F++ F + ++ANLP Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYDN-VTIINKDVLKANVHEVFQEQFEEGQDVMVVANLP 128 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ Sbjct: 129 YYVTTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKDYGSLSIAIQYYTEVET 185 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S+VI + PI ++ ++ + +F +RRKTL +L Sbjct: 186 VMTVPRTVFVPQPNVDSSVIRLLKRPKPIVEVIDEKFFFEVVRASFAQRRKTLMNNLSNN 245 Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E +L + GI+ R E LSIE+F ++N L Sbjct: 246 LNDFPKDKELLERILTEIGIDPKRRGETLSIEEFAMLSNALV 287 >gi|195016027|ref|XP_001984325.1| GH15074 [Drosophila grimshawi] gi|193897807|gb|EDV96673.1| GH15074 [Drosophila grimshawi] Length = 415 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 155/292 (53%), Gaps = 23/292 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 +++ ++ YK+ K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 104 TIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRSILR 163 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 +++I++EKD +F +L++ +S +++I +D L+ + EK + + + +I Sbjct: 164 RQPQRLILVEKDARFTETLQLLRECASPLQMQVDIYHEDILRFNIEKHVPDTAQRLHLIG 223 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP++I TRLL NW A F + +TL FQKEV ERI AQ S RLSV++ Sbjct: 224 NLPFSISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAQLGSEQRCRLSVMS 283 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ + F I F P P+V V+ +P P +P L ++++ + F R+K Sbjct: 284 QIWTQPLLKFIIPGKAFVPKPQVDVGVVKVMPLKQPKTQLPFAL--VERVVRHIFSMRQK 341 Query: 236 TLRQSLKRL----GGE----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L G E NL A ++ LR LS+ + R+ ++ ++ Sbjct: 342 YCRRGFGTLLPPDGREEITHNLFQLADVQDTLRPFELSVAECLRLADVYAEH 393 >gi|121611713|ref|YP_999520.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2] gi|166221713|sp|A1WS95|RSMA_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121556353|gb|ABM60502.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2] Length = 284 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 135/260 (51%), Gaps = 24/260 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 P+K +GQ+FL D I+ I ++ G ++EIG G LTQ L+ LG ++ VIE D Sbjct: 16 PRKRLGQHFLTDQRIIDAIVQAIAPQPGQPMVEIGPGLAALTQPLVERLG--RLTVIELD 73 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSP------IRIIANLPYNIGT 131 + L+ + L++IQ D L+VDF ++P +R++ NLPYNI T Sbjct: 74 RDLALRLRRHAH-----LQVIQADVLRVDFTALAQTLRATPPTPPTRLRVVGNLPYNIST 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +LF+ ++ + E + QK+V ER+ A+ YGRLSV+ WR + + Sbjct: 129 PILFHLLAHGS---AIEDQHFMLQKQVVERMVAKPGGSDYGRLSVMLQWRYAMEKLLHVP 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P F P P+V S V+ +PH P L+++ Q AF +RRK L +L R H Sbjct: 186 PASFAPPPRVDSAVVRMLPHAQPAAVSRPMLEELVQLAFSQRRKLLHHTLGRWLDA---H 242 Query: 252 Q-AG-IETNLRAENLSIEDF 269 Q AG +T RAE + ++++ Sbjct: 243 QYAGRFDTRRRAEEVPVQEY 262 >gi|291547608|emb|CBL20716.1| dimethyladenosine transferase [Ruminococcus sp. SR1/5] Length = 291 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 21/293 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++++ +L Y + +K GQNFL+D ++L+KI ESSG ++EIG G G +T Sbjct: 6 LGNPKYTIE-VLQKYHFVFQKRFGQNFLIDEHVLEKIIESSGITKDDFILEIGPGIGTMT 64 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L AR+V +E D PILKD N + +I +D LK D +K N P+ Sbjct: 65 QYLAEA-AREVAAVEIDSSLIPILKDTLKDWDN-VSVINNDILKTDIKKIADEKNGGKPV 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 123 KVVANLPYYITTPIIMGLFEKNVP---VDSITVMVQKEVADRMQVGPGTKDYGALSLAVQ 179 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI + P P ++ + ++ + +F +RRKT Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIKLTRYEKP-PVDVKDEGLMFRLIRASFNQRRKT 238 Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L ++ G E++ ++ + N+R E L++E F + N + D ++ Sbjct: 239 LVNGIRNSGDFSLSKEEIEDVFNRCDLPLNIRGEALTLEQFAMLANCIYDEKN 291 >gi|220904363|ref|YP_002479675.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868662|gb|ACL48997.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 279 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 135/278 (48%), Gaps = 12/278 (4%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 H K I++H KK +GQ+FL + +IA +IEIG GPG LT+ + Sbjct: 7 HMKKNIVTHTPRA-KKSLGQHFLRREDTCCRIAALIAPAAQDRIIEIGPGPGALTRAIEA 65 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 +++++EKD+ + + + + + I DALK + + + P +II NLPY Sbjct: 66 TPHSRLLLLEKDRHWAAERQRLGGANTQAVLI---DALKFAWRRI-SPEEPWKIIGNLPY 121 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ + L+++ S T W+ + QKEVG+R+ A + HYG LSV + M Sbjct: 122 NVASPLIWDIFSRST---GWQRAAFMVQKEVGQRLAAHPGTGHYGALSVWVQSYARPRME 178 Query: 188 FDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-- 244 F + P F P PKV S V+ F P N P E L ++ + F +RRK L +R Sbjct: 179 FVVGPGAFSPPPKVDSAVLSFEPLPANERPAHPELLSRLLRICFQQRRKQLGGVFRRAAQ 238 Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 G E LH A I+ LR E L+ DF RI D Sbjct: 239 PGLEKSLHDACIDPALRPEALTCSDFQRIAAFWASQLD 276 >gi|323495829|ref|ZP_08100897.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio sinaloensis DSM 21326] gi|323319045|gb|EGA71988.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio sinaloensis DSM 21326] Length = 268 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 E---YHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L L ++ +E F +RRKT+R K L L I Sbjct: 184 PKVDSAVVRLVPYEELPYPATSLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESLDIN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 +R ENL+++ F + N L N+ Sbjct: 244 PGMRPENLTLKQFVDLANWLDANR 267 >gi|198276988|ref|ZP_03209519.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135] gi|198270513|gb|EDY94783.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135] Length = 267 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 133/257 (51%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + V+E+G G G LTQ LL R + V+E Sbjct: 4 VKPKKFLGQHFLKDLQVAQDIADTVDACPALPVLEVGPGMGVLTQYLLK-KDRPLKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+ D LK+D + F+ P + N PYNI +++ F + Sbjct: 63 DFESVAYLRENFPQLGDH--IIEQDFLKMDLRQLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A+ + YG LSVL +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAARPGNKTYGILSVLIQAWYSVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K+I + F +RRKTLR S+ + + A Sbjct: 177 PKVKSAVIRMTRNETKELGCNEQLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS++DF +TN Sbjct: 237 NKRPEQLSVQDFIDLTN 253 >gi|325141930|gb|EGC64370.1| dimethyladenosine transferase [Neisseria meningitidis 961-5945] gi|325197917|gb|ADY93373.1| dimethyladenosine transferase [Neisseria meningitidis G2136] Length = 259 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF NI +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E++ ++N L Sbjct: 236 QDRAEHIAPEEYVALSNYLA 255 >gi|310657782|ref|YP_003935503.1| dimethyladenosine transferase [Clostridium sticklandii DSM 519] gi|308824560|emb|CBH20598.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Clostridium sticklandii] Length = 289 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 146/286 (51%), Gaps = 19/286 (6%) Query: 3 MNN-KSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MNN SH + K I+S Y K +GQNFL+D ++L +I +S+ TVIEIG G G Sbjct: 1 MNNLASHKITKDIVSKYGFRFTKSLGQNFLVDEHVLSQIVDSAEIDSEDTVIEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118 LT+ L+ A++VI IE D+ PIL + + N ++II D LK D + N SP Sbjct: 61 LTRE-LSYRAKQVISIEIDKNLIPILSETLADRDN-IKIINQDILKTDLHELVNEFSPDR 118 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++ANLPY I T ++ ++ + P +++ ++ QKEV RI A ++ YG LSV Sbjct: 119 KVKVVANLPYYITTPIIMRFLE-EKVP--LKTMVIMIQKEVANRINAVPSTKDYGSLSVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRK 235 + ++ F P P V S VI + I E L ++ + AF KRRK Sbjct: 176 VQYYCDTDIVAKAPKGAFIPEPGVDSAVIKLEVKEDKGIELIDEDLFFEVVKAAFSKRRK 235 Query: 236 TLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITN 274 TL +L G + L A I+ LR E L ++ F + N Sbjct: 236 TLLNALSTFGNIGGKQEAKMALEIANIDAQLRGETLDMKQFASLAN 281 >gi|254509385|ref|ZP_05121470.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16] gi|219547693|gb|EED24733.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16] Length = 268 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 E---YHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ P P L L ++ +E F +RRKT+R K L L I Sbjct: 184 PKVDSAVVRLVPYEELPYPATNLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESLDIN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 +R ENL+++ F + N L N+ Sbjct: 244 PGMRPENLTLKQFVDLANWLDANR 267 >gi|163753725|ref|ZP_02160848.1| dimethyladenosine transferase [Kordia algicida OT-1] gi|161325939|gb|EDP97265.1| dimethyladenosine transferase [Kordia algicida OT-1] Length = 260 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 96/258 (37%), Positives = 137/258 (53%), Gaps = 11/258 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK++GQ+FL D + ++IA++ V+EIG G G LT+ LL V E Sbjct: 4 KVRAKKHLGQHFLKDEEVAQRIADTLTLNHYKNVLEIGPGMGVLTKYLLEKPV-TTYVCE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + LK Q N+ I+++D LK D +K F P II N PYNI T+++F Sbjct: 63 IDTESVAYLKAHYLQLSNK--ILEEDFLKYDLKKTFK-DEPFAIIGNFPYNISTQIVFKT 119 Query: 138 ISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + D P F + +FQKEV +RI A + YG LSVLT A +F + P+VF Sbjct: 120 LEMRDQIPEF----SGMFQKEVAQRICAPHGNKTYGILSVLTQAFYDAEYLFTVPPNVFK 175 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S V+ I N +PC + ++ + AF +RRKTLR SLK + L + I Sbjct: 176 PPPKVDSGVMRLIRKENYTLPCEEKLFFRVVKTAFQQRRKTLRNSLKTFNLSDNLKEDTI 235 Query: 256 ETNLRAENLSIEDFCRIT 273 LR E +S++ F +T Sbjct: 236 -FGLRPEQVSVQGFVDLT 252 >gi|89898917|ref|YP_521388.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118] gi|119365053|sp|Q223E6|RSMA_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89343654|gb|ABD67857.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118] Length = 261 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 22/273 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K I +K GQ+FL D +++ I ++ G G ++EIG G LTQ L+ LG VI + Sbjct: 2 KHIARKRFGQHFLTDGAMIEAIVDAIGPRPGQAMVEIGPGLAALTQPLVERLGQLTVIEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLL 134 ++D L HP +L +I+ D LKVDF + ++ +R++ NLPYNI T +L Sbjct: 62 DRD------LAARLRAHP-QLVVIESDVLKVDFAQVAQALTTTKLRVVGNLPYNISTPIL 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + E + QKEV +R+ A + YGRLSV+ WR + + P Sbjct: 115 FHLLN---FIDVIEDQHFMLQKEVIDRMVAGPCTAAYGRLSVMLQWRYAMENVLLVPPES 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S V+ +PH+NP L ++ Q AF +RRK LR +L + L Q G Sbjct: 172 FEPPPRVNSAVVRMVPHVNPAAVDGHLLSELVQVAFSQRRKLLRHTLGQ-----WLQQKG 226 Query: 255 ----IETNLRAENLSIEDFCRITNILTDNQDIA 283 + RAE + + ++ + L + A Sbjct: 227 YADEFDVQRRAEEVPVAEYLALALKLATHSQAA 259 >gi|116492073|ref|YP_803808.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745] gi|122266463|sp|Q03HF6|RSMA_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116102223|gb|ABJ67366.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745] Length = 297 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 146/289 (50%), Gaps = 21/289 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N + + + IL Y + KK +GQNFL D N+L I +++ VIE+G G G+ Sbjct: 5 MDIGNPTRT-RAILEKYGLSAKKSLGQNFLTDPNVLLNIVDAAEVSPEDDVIEVGPGIGS 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNIS 116 LT+ + A V+ E D+ +L + S + N + ++ D LK + E + Sbjct: 64 LTEQIAK-RAHHVLAFEIDRNLMNVLDETLSPYDN-ITVVNQDVLKANVNEEVENHLDGK 121 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++++ANLPY I T +L ++ A T P + + ++ QKEV ER+TAQ YG LSV Sbjct: 122 RRLKLVANLPYYITTPILKTFM-ASTLP--IDKMVVMMQKEVAERLTAQPGDKEYGSLSV 178 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRR 234 + +R + FD+S VF P PKV S ++ P +P + K F RR Sbjct: 179 VVQYRMNTQIEFDVSSKVFVPRPKVDSAIVSLTPRAGWEVMPEDDKDFFKTVHGCFMHRR 238 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITN 274 K + +++ L G +N+L GI+ +R E L++ DF ++ N Sbjct: 239 KNIWNNMQGLYGKEPEIKAKIQNVLDDLGIDPQVRPERLTVLDFIKLHN 287 >gi|326436805|gb|EGD82375.1| dimethyladenosine transferase 1 [Salpingoeca sp. ATCC 50818] Length = 321 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 145/308 (47%), Gaps = 37/308 (12%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S+ +L Y + K + QNFLLD +I K +G L VIE+G GPG+LT+ +L Sbjct: 8 SVAQLLRLYGVRALKDLSQNFLLDPSITDKFVRHAGKLKDKVVIEVGGGPGSLTRSILKA 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------------- 113 RK+ VIEKD + P+L ++ EII DAL +D+E+ Sbjct: 68 QPRKLYVIEKDTRMLPMLDLVAEASGGVAEIIPGDALHIDYEQLITQANVATQPTAAEGA 127 Query: 114 --NISSP----IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERI 162 + ++P + II NLP+ I T L+ +++ + +LTL FQ+EVGERI Sbjct: 128 DSSAAAPAETDLHIIGNLPFGIATPLILSYLRQLSRRDSAFARSRPTLTLCFQREVGERI 187 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL 222 A + R+SV++ F I F P+PKV + V+ F P +P LE L Sbjct: 188 CAPPRTKPRSRISVISQLYADVRPAFVIPSTAFVPAPKVEAMVVSFRPR-EQLPEGLEQL 246 Query: 223 -----KKITQEAFGKRRKTLRQSL-KRLGG----ENLLHQAGIETNLRAENLSIEDFCRI 272 +++ + +G R K LR K +GG +++L AG RA LS + + Sbjct: 247 TFDQMERVLRIGYGSRLKRLRHVFSKHVGGLQAADDMLASAGFPAETRAFFLSTRQWIDL 306 Query: 273 TNILTDNQ 280 +Q Sbjct: 307 ATAFYQHQ 314 >gi|332798095|ref|YP_004459594.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter sp. Re1] gi|332695830|gb|AEE90287.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter sp. Re1] Length = 276 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 138/278 (49%), Gaps = 22/278 (7%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--AR 71 + Y I K +GQ+FL+D L + E++ V+EIG G G LT L LG A+ Sbjct: 1 MKKYNIKADKRLGQHFLIDSRPLLSMIEAAQLSPEDEVLEIGPGLGVLT---LELGTRAK 57 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNI 129 +V+ +EKD+Q P+L D++ N + I+++D LK+D EK ++IANLPY I Sbjct: 58 RVVAVEKDRQLIPVLDDLTRDFKN-ICILEEDVLKLDLEKMSESLFGGRFKVIANLPYYI 116 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 ++ I L+ QKEV +R+TA YG LS+ M+ Sbjct: 117 TNPIIMKIIENRNMVTLA---VLMVQKEVAQRLTACPGKKDYGILSIAVKLYADVNMICT 173 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKR---L 244 I F P PKV S V+ P + ES K+ + AFG+RRKT++ SLK L Sbjct: 174 IGRESFLPPPKVESAVVRLTLRQEPRVQLKDESFFFKVVEAAFGERRKTIKNSLKSRLAL 233 Query: 245 GGENL------LHQAGIETNLRAENLSIEDFCRITNIL 276 G +L L AGI+ R E LSIE++ R+ L Sbjct: 234 AGTDLDIIDKALEAAGIDALRRGETLSIEEYARLAEEL 271 >gi|164688862|ref|ZP_02212890.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM 16795] gi|164602066|gb|EDQ95531.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM 16795] Length = 288 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 146/280 (52%), Gaps = 17/280 (6%) Query: 7 SH-SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 SH + K +++ + K +GQNFL+D N++ +I E + + +IE+G G G LT+ + Sbjct: 6 SHRATKEVVNKHNFKFSKSLGQNFLIDDNVIDRILEGARLSETDRIIEVGPGIGTLTREM 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRII 122 + A V+ IE D+ PILK+ + N +E++ +D LKVD + N P++++ Sbjct: 66 GKV-AENVVAIEIDKTLIPILKETLADLDN-VEVVNEDILKVDVQGLINEKLNGGPVKLV 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ ++ D P + + ++ QKEV +R+ A+ ++ YG LSV + Sbjct: 124 ANLPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAKPSTKDYGALSVAVQYYC 180 Query: 183 KATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 ++ H+F P P V S VI H + + K + +FG+RRKTL S Sbjct: 181 DTEIVAKAPRHMFVPQPNVDSIVIGLHVRDEKKYVVDNEDIFFKTVKASFGQRRKTLLNS 240 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITN 274 L LG L A I+ R E LSI++F ++N Sbjct: 241 LGGLGFLSKDEIREALQAANIDEKRRGETLSIDEFANLSN 280 >gi|225386275|ref|ZP_03756039.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme DSM 15981] gi|225047554|gb|EEG57800.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme DSM 15981] Length = 303 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 20/281 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y+ + +K GQNFL+D ++L KI ++G V+EIG G G +TQ L AR+ Sbjct: 28 IIQKYQFVFQKKFGQNFLIDPHVLDKIITAAGIGPEDCVLEIGPGIGTMTQYLAE-HARQ 86 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 VI +E D PIL + + N + +I DD LKVD + N PI+++ANLPY I Sbjct: 87 VIAVEIDANLIPILGETLKDYSN-VTVINDDILKVDINRLVDEHNGGKPIKVVANLPYYI 145 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + +++T++ QKEV +R+ S YG LS+ + ++ + Sbjct: 146 TTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYASPYIVAN 202 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243 + P+ F P P V S VI + P P + + ++ + +F +RRKTL+ L Sbjct: 203 VPPNCFIPRPNVGSAVIRLTRYKEP-PVRVTDPALMFRLIRASFNQRRKTLQNGLNNSPE 261 Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDN 279 EN+ + G+ ++R E L++E F + N T++ Sbjct: 262 LAYTKENIAEAIAGLGLPASVRGEALTLEQFAALANYFTEH 302 >gi|269468227|gb|EEZ79917.1| dimethyladenosine transferase, rRNA methylation [uncultured SUP05 cluster bacterium] Length = 254 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 135/253 (53%), Gaps = 13/253 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ +I + ++EIG G G +T LL ++ VIE D Sbjct: 9 RKRFGQNFLTDARIVDRIIATIAPKKNDNLLEIGPGKGAMTLPLLE-ELNQLHVIEIDTD 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L+ ++ L I Q DALK D K + +P+R++ NLPYNI + +LF+ ++ Sbjct: 68 LIALLQSFGKEN---LIIHQGDALKFDVSK---LPAPLRVVGNLPYNISSPILFHLLNNR 121 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + QKEV ER+ A + YGRLSV+ + M+F + P F P+PKV Sbjct: 122 EY---IQDMIFMLQKEVVERMVASNGNKTYGRLSVMIQAFFEVEMIFVVPPESFEPAPKV 178 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S +++ P + + +KI + +F +RRKTLR LK L + Q I+ + RA Sbjct: 179 DSAIVYLKPLEKNLIDDITVFEKIVKASFAQRRKTLRNCLKSLLTQ---EQTSIDLSQRA 235 Query: 262 ENLSIEDFCRITN 274 E LS+ +F +T+ Sbjct: 236 EMLSVNEFITLTS 248 >gi|114565628|ref|YP_752782.1| rRNA (adenine-N(6)-)-methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336563|gb|ABI67411.1| dimethyladenosine transferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 294 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 19/291 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ ++ Y I P+K GQNFL+D NIL+KIA ++EIG G G Sbjct: 1 MKRTDSLSGIRYYMNKYGIHPRKKWGQNFLVDGNILRKIAHLCNPGCEKLLVEIGPGLGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116 LT+ L + ++ V+ IE D L + S Q N + ++ D L++D E+ + + Sbjct: 61 LTRELAGI-SKGVLAIEIDFGLREALAE-SLQGLNNIRLLFADILQIDLEEELSKAFGGE 118 Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 S ++ AN+PYNI T ++F + + ES TL+ QKEV RI A +S YG L Sbjct: 119 DISGYKVCANIPYNITTPIIFKLLETCSQ---MESATLMMQKEVASRILASPDSKEYGLL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLES-LKKITQEAFGK 232 +++T + +A + +S + F+P P+V S+VI P + ES KK+ + +F K Sbjct: 176 TLMTAYYAEAEYLMPVSRNCFYPRPEVDSSVIQLRPIKGKRVQVKDESNFKKLLRVSFQK 235 Query: 233 RRKTLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 RRKT+ S+++ ++L+ GI+ R ENLSIE F I++ L Sbjct: 236 RRKTILNICVDLFSVEKAEIHSILNSLGIDPKSRPENLSIEQFALISDTLV 286 >gi|329942659|ref|ZP_08291438.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10] gi|332287254|ref|YP_004422155.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] gi|254574590|gb|ACT68006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] gi|313847840|emb|CBY16834.1| dimethyladenosine transferase [Chlamydophila psittaci RD1] gi|325506928|gb|ADZ18566.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] gi|328814919|gb|EGF84908.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10] gi|328914500|gb|AEB55333.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] Length = 278 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 139/268 (51%), Gaps = 23/268 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK + QNFL+D NIL+KI S G V+EIG G G LT++L+ GA V+ +EKD Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAH-VVALEKD- 77 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWI 138 P+ ++ Q P LEI DA K + + R++ANLPY++ T LL Sbjct: 78 ---PMFEETLKQLPIHLEIT--DACKYPLSQLQDKGWQGKGRVVANLPYHVTTPLLTKLF 132 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P W+++T++ Q EV RI AQ YG L++ + F +SP F P Sbjct: 133 L--EVPNQWKTVTVMIQDEVARRIKAQPGGKEYGSLTIFLQFFVDVRYAFKVSPGCFLPK 190 Query: 199 PKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+V+S V+H P P+ SL T+ AFG+RRK L +LK L + + +A Sbjct: 191 PQVSSAVVHMTVKDRFPLEEPLRTKFFSL---TRAAFGQRRKLLANALKDLYPKERVFEA 247 Query: 254 GIETNL----RAENLSIEDFCRITNILT 277 + N R E LS++D+ ++ +L+ Sbjct: 248 LSQLNFSDKTRPETLSLDDYLKLFELLS 275 >gi|257066995|ref|YP_003153251.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548] gi|256798875|gb|ACV29530.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548] Length = 280 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 15/272 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTL 68 +K I+ Y K +GQNFL+D N ++KI +++ +D V+EIG G G +T +M T Sbjct: 10 VKDIIDLYNFRFSKSLGQNFLIDKNFVEKIVDAA-DVDSSNVLEIGPGIGTITYEMAKT- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANL 125 A+KV+ IE D PI+ + + N ++I +D LK D + ++++NL Sbjct: 68 -AKKVVAIEIDSSLIPIIGENMEEFDN-FKLIHEDILKADLGRIIEEEFAGEDFKVVSNL 125 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T ++ I D P +T++ QKEV +R+ A + S Y LSV + + A Sbjct: 126 PYYITTPIIEKLIETD-LP--CRDMTIMVQKEVADRMLADEKSKDYSSLSVFIKYYSDAE 182 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + ++ VF P PK+ STV+ + L + F KRRKT+ SL Sbjct: 183 KITNVPKSVFMPQPKIDSTVLKLNLRKYRDDVDEKKLFALVHAGFNKRRKTILNSLSDAC 242 Query: 246 GENLLHQA----GIETNLRAENLSIEDFCRIT 273 + L A GI+ NLRAENLS++DF +T Sbjct: 243 EKEKLRLAFDKLGIKNNLRAENLSLDDFINLT 274 >gi|297624761|ref|YP_003706195.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093] gi|297165941|gb|ADI15652.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093] Length = 264 Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 141/267 (52%), Gaps = 20/267 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L + + K GQNFL+D +L+ I ++ TV+E+G G G LT+ L Sbjct: 1 MRELLERHGLRADKGFGQNFLVDEGVLRSIVAAAELGPQSTVLEVGPGLGVLTRELAARA 60 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 R VI +E D++ P+L++ + N + ++ D L D S+ ++ANLPYN+ Sbjct: 61 GR-VISVELDRRLLPVLQETLAGLGN-VTLVHGDGLTFDLSCLPEGSA---MVANLPYNV 115 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT +L + + + + +L Q+EV ER++A +P YG LSV+ +A + Sbjct: 116 GTPILVRALESGRF----ARVVVLLQREVAERLSATPGTPAYGALSVVVAHFGRARSVRL 171 Query: 190 ISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-- 245 + P F P P+VTS+V+ P P P +L ++ + AF RRKTL+++L G Sbjct: 172 VKPSAFSPPPEVTSSVVRLDLTPGRAPDP----ALFRLVRHAFAHRRKTLKKNLLMAGYP 227 Query: 246 GENL---LHQAGIETNLRAENLSIEDF 269 E + L G+E +RAE LS+E F Sbjct: 228 AERVARALQTLGLEAQVRAERLSVEQF 254 >gi|238786684|ref|ZP_04630485.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641] gi|238725052|gb|EEQ16691.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641] Length = 222 Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 15/210 (7%) Query: 75 VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIG 130 VIE D+ L + HP ++L I Q+DA+KV+F + ++ P+R+ NLPYNI Sbjct: 14 VIELDRDLAARL----ASHPQLKDKLTIHQEDAMKVNFSELAKLAGQPLRVFGNLPYNIS 69 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T L+F+ S + + + QKEV R+ A NS YGRL+V+ + + ++ Sbjct: 70 TPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEV 126 Query: 191 SPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 P F P+PKV S V+ IPH+ NP+ + L +IT +AF +RRKT+R SL L Sbjct: 127 PPTAFTPAPKVDSAVVRLIPHVQMPNPV-GDVRMLSRITTQAFNQRRKTVRNSLGDLFTP 185 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 186 EQLIELGIDPILRAENISVAQYCKLANWLS 215 >gi|154494071|ref|ZP_02033391.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC 43184] gi|154086331|gb|EDN85376.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC 43184] Length = 290 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 137/267 (51%), Gaps = 23/267 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 PKK +GQ+FL DL I ++IA++ + V+EIG G G LTQ LL G + V+E D Sbjct: 35 PKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVELDM 93 Query: 80 ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +Q FP+L+ +I+ +D L++D K F +I N PYNI +++ Sbjct: 94 ESVDYLEQNFPVLEG---------KILAEDFLRLDLGKLF--PDQFCVIGNYPYNISSQI 142 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P + + QKEV ER+ A S YG LSVL + +F +S + Sbjct: 143 FFKVLDYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSEN 199 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S VI + + C E L K + + +F +RRKTLR S+K L G++ Sbjct: 200 VFDPPPKVKSAVIRMVRNDRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDY 259 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 + N R E LS+E F +T I N Sbjct: 260 SLPIFNKRPEQLSVEQFVELTLITERN 286 >gi|218132712|ref|ZP_03461516.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC 43243] gi|217992438|gb|EEC58441.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC 43243] Length = 296 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 24/292 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N +++L+ I+ Y +K GQNFL+D N+++KI +G V+EIG G G +TQ+ Sbjct: 9 NPTNTLE-IIKKYGFGFQKRFGQNFLIDGNVVEKIVREAGITKDDFVLEIGPGIGTMTQI 67 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRI 121 L AR+V +E D+ PIL + + + N + +I +D LKVD K N PI++ Sbjct: 68 LCE-NAREVAAVEIDKNLIPILAETLAPYDN-VSVINEDILKVDVRKLAEEKNDGRPIKV 125 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ + Sbjct: 126 VANLPYYITTPIIMGLFESHVP---LESITIMVQKEVAQRMQVGPGTKDYGALSLAVQFY 182 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQ 239 A ++ + F P P V S VI + H + P+ E ++ + AF +RRKTL Sbjct: 183 ADAQIVLKVPASCFMPRPNVDSAVIKLVRHEDAPVKVKDEQFMFRVIRAAFNQRRKTLAN 242 Query: 240 SL---KRLGGEN----------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 SL L G L G+ +R E L++ F + + L + Sbjct: 243 SLANSSELNGSGHACTREDVTTALEAMGLPAGIRGEALTLAQFGELADRLIE 294 >gi|329947570|ref|ZP_08294729.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328523885|gb|EGF50965.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 367 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/270 (34%), Positives = 131/270 (48%), Gaps = 16/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P K +GQNF+ D +++I S+G TV+EIG G G+LT LL GAR V +E Sbjct: 81 IRPTKTLGQNFVHDAGTVRRIVRSAGVRPDDTVLEIGPGLGSLTLALLETGAR-VSAVEI 139 Query: 79 D---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNIGTR 132 D + P+ + D + RL +I+ DAL + E P R++ANLPYN+ Sbjct: 140 DPVLARALPVTVADRMPEAAGRLGVIEADALSITAEALSGAEQPPPTRLVANLPYNVAVP 199 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + A P E++T++ Q EV +R+ A S YG SV W A IS Sbjct: 200 VLLTVLEAL---PSLETVTVMVQAEVADRLAAAPGSRTYGVPSVKAAWYAAARRTLTISR 256 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 HVF+P P V S ++ + P E + + AF +RRKTLR++L G Sbjct: 257 HVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALAEAAGGADAA 316 Query: 252 QA-----GIETNLRAENLSIEDFCRITNIL 276 +A GI+ R E L I F + L Sbjct: 317 EAALRATGIDPTRRGETLDITAFAALAEAL 346 >gi|326389221|ref|ZP_08210789.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW 200] gi|325994584|gb|EGD53008.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW 200] Length = 273 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 141/263 (53%), Gaps = 16/263 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNF+ D NIL KI +SG V+EIG G G LT+ L +KVI E D++ + Sbjct: 13 GQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAK-RVKKVISFEIDRELYEA 71 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142 K+ N + II +D +KVD K N P +++ANLPY I + ++ + Sbjct: 72 TKE-KLNIYNNVIIINEDIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 F + +T+L QKEV ERI A + YG L+V ++ K +F++ P VF P PKV Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKVD 186 Query: 203 STVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259 S+++ I + + E L + + AFG+RRK L +LK LG + ++ +A +NL Sbjct: 187 SSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246 Query: 260 ----RAENLSIEDFCRITNILTD 278 R E LSIE+F + N++ D Sbjct: 247 SPQRRGETLSIEEFAALANVIYD 269 >gi|304405864|ref|ZP_07387522.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9] gi|304345107|gb|EFM10943.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9] Length = 303 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 144/282 (51%), Gaps = 20/282 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69 + I+ Y KK +GQNFL+D NIL KI ++ LDG +EIG G G LTQ L Sbjct: 22 RDIVKKYGFEFKKSLGQNFLIDQNILHKIV-AAAELDGTKGALEIGPGIGALTQHL-ARS 79 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A +V +E D + PIL+D + N +E++ D LK++ F + F S I ++ANL Sbjct: 80 AGRVTAVEIDNRLIPILRDTLAGEAN-VEVVHADVLKLNLHELFAERFEGLSGISVVANL 138 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L + + P E + ++ QKEV +R+ A+ YG LSV + + + Sbjct: 139 PYYVTTPILMKLLE-ERLP--LEHIVVMIQKEVADRMAAKPGGKEYGSLSVAVQYYCEPS 195 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243 ++ + VF P P V S VI P + + Q +F +RRKTL ++ Sbjct: 196 IVCTVPHTVFIPQPNVDSAVIKLSLREKPAVETRDEAHFFRTVQASFAQRRKTLMNNMSS 255 Query: 244 LGGEN-------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G++ ++ GI+ + R E LS+E+F +++ L D Sbjct: 256 WIGKDHRETLTSIMEGCGIQPSRRGETLSLEEFAKLSAALYD 297 >gi|328954033|ref|YP_004371367.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca acetoxidans DSM 11109] gi|328454357|gb|AEB10186.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca acetoxidans DSM 11109] Length = 287 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 17/283 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S K + +++ P + +GQ+FLL + +++ + V+EIGAG G LT L Sbjct: 5 SPKVLCRRHRLTPNRSLGQHFLLHPDQARRLVAALELRGQEVVVEIGAGLGALTYFLAES 64 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127 G R VI +E D++ PIL + + ++ DALK D+ + + NLPY Sbjct: 65 GGR-VIALELDRRLIPILTTEVLPGFSNVMVVSQDALKFDYLALSREEGQSLTVAGNLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + LLF + T + + Q+EVG R+ AQ YG LSVL + + Sbjct: 124 QITSPLLFKLMGVKTA---IRIMLFMVQQEVGLRLMAQPGGKDYGILSVLIQYHFHLRRL 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245 F + P F+P+PKV S V+ F P L P P + + L ++ + AF RRKTLR +L Sbjct: 181 FLLKPSNFYPAPKVDSVVLGFRPRL-PEPSAINEDFLAQVVKAAFSTRRKTLRNTLTAQS 239 Query: 246 G---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +LH I+ RAE LS++DF R++N L + Sbjct: 240 SLLRASPAVILAILHDLRIDPGRRAETLSVDDFVRLSNRLAEK 282 >gi|306820341|ref|ZP_07453980.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551670|gb|EFM39622.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 287 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 140/273 (51%), Gaps = 17/273 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ Y K +GQNFL++ NIL KI ES+ V+EIG G G LTQ L A+K Sbjct: 14 IIKKYGFKMTKSLGQNFLINENILDKIIESADISSDDVVLEIGTGIGTLTQRLCE-NAKK 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPYNI 129 VI +E D+ PIL + S + N + II D LK D K +I+ I+++ANLPY I Sbjct: 73 VIAVEIDRNLIPILNETLSNYDN-ITIINKDILKTDINEELKNLSINQKIKVVANLPYYI 131 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + + + L+ QKEV +R+ A ++ YG LS+ + ++ Sbjct: 132 TTPIIMKVLEDKVN---VDCMVLMLQKEVADRMNASPSTKDYGSLSIAVQYYCDTAIVCK 188 Query: 190 ISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSL---KRL 244 + F P P V S V+ + + + E L KI + +F KRRKT+ SL + L Sbjct: 189 VPKSSFIPEPNVDSLVLKLVVNEKRNVDISNEDLFFKIVRGSFSKRRKTILNSLSNYEDL 248 Query: 245 GGEN----LLHQAGIETNLRAENLSIEDFCRIT 273 G ++ LL +GI++ R E LSI +F + Sbjct: 249 GDKDKIQKLLEISGIDSKRRGETLSIYEFANLA 281 >gi|169824244|ref|YP_001691855.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328] gi|167831049|dbj|BAG07965.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328] Length = 283 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 18/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K IL + K +GQNFL+D N+++ I + S + VIEIG G G LT+ L+ Sbjct: 11 IKEILDKFGFKFSKSLGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVD-K 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + + IE D + +LK N +II +D LKVD + + +++ANLPY I Sbjct: 70 CKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKFKVVANLPYYI 128 Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 T + LFN+ ES+T++ QKEV R+ A S Y LS+ + A + Sbjct: 129 TTPIIEHLFNY------RDIIESITVMVQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242 + + VF P PKV S V++ E L+++ + F KRRKT+ S Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILNSFTSGFV 242 Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277 + E L L + G++ NLRAENLS+ED+ I L+ Sbjct: 243 NVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280 >gi|303234855|ref|ZP_07321480.1| dimethyladenosine transferase [Finegoldia magna BVS033A4] gi|302493973|gb|EFL53754.1| dimethyladenosine transferase [Finegoldia magna BVS033A4] Length = 283 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 18/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K IL + K +GQNFL+D N+++ I + S + VIEIG G G LT+ L+ Sbjct: 11 IKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVD-K 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + + IE D + +LK N +II +D LKVD + + +++ANLPY I Sbjct: 70 CKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKFKVVANLPYYI 128 Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 T + LFN+ ES+T++ QKEV R+ A S Y LS+ + A + Sbjct: 129 TTPIIEHLFNY------RDIIESITVMVQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242 + + VF P PKV S V++ E L+++ + F KRRKT+ S Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILNSFTSGFV 242 Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277 + E L L + G++ NLRAENLS+ED+ I L+ Sbjct: 243 NVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280 >gi|288554650|ref|YP_003426585.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4] gi|288545810|gb|ADC49693.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4] Length = 302 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 19/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y KK +GQNFL+D N+L+ I +++ + IEIG G G LT+ L Sbjct: 22 KEILKKYGFNFKKSLGQNFLIDTNVLRNIVDAANLDETSGAIEIGPGIGALTEQLAK-RV 80 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +V+ E DQ+ P+LKD S + N ++II D LK D + F + ++ANLP Sbjct: 81 DQVVAFEIDQRLLPVLKDTLSPYDN-VQIIHSDVLKADINEAIKAHFKDGQDLMVVANLP 139 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + P + ++ Q EV ERI A+ + YG LS+ + +A Sbjct: 140 YYVTTPILMKLLEL-KLP--IRGIVVMIQAEVAERIAAKPGTKDYGSLSIAAQYYAEAEK 196 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241 + + VF P P+V S V+ P ++ K+ +F RRKT+ +L Sbjct: 197 VLTVPASVFVPQPRVDSAVLRLTIRQKPAVEVIDEQYFFKVFHASFANRRKTILNNLVHN 256 Query: 242 -----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++ E L +A I+ R E LSIE+F ++++ L Sbjct: 257 LASKSQKAEIEQALAEADIDPKRRGETLSIEEFAKLSDSL 296 >gi|195174159|ref|XP_002027848.1| GL16283 [Drosophila persimilis] gi|194115524|gb|EDW37567.1| GL16283 [Drosophila persimilis] Length = 337 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 153/291 (52%), Gaps = 23/291 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 +++ ++ YK+ K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 20 TIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRSILR 79 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 +++I++EKD++F +L++ +S +++I DD L+ + E+ +++ I +I Sbjct: 80 RQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDMTQRIHLIG 139 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP++I TRLL NW + A F + +TL FQKEV ERI A S RLSV++ Sbjct: 140 NLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLSVMS 199 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ M F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 200 QIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSL--VERVVRHIFSMRQK 257 Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R+ L + L +A + LR+ LS+ R+ + + Sbjct: 258 YCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308 >gi|169335103|ref|ZP_02862296.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM 17244] gi|169257841|gb|EDS71807.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM 17244] Length = 287 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 18/286 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NK +++ I + Y KK +GQNFL D NI+ KI +S D V+E+G G G+ Sbjct: 1 MKATNK-NTISEITNKYDFRFKKDLGQNFLTDENIVLKIVDSLELTDDEVVLEVGPGMGS 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNIS 116 LTQ L A KV +E D + +L++ S++ N +EII D LK D E + Sbjct: 60 LTQKLAE-RAYKVYAVEIDTRAVNMLEETLSEY-NNIEIINKDILKTDLREILEDAIKEN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I+ I+NLPY I + +L + +E++ ++ QKEV R+ A+ N+ Y ++ Sbjct: 118 RKIKFISNLPYYITSPILMKVLEDKVM---FENIVVMLQKEVATRLNAKVNTKDYSSFTI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234 + + +F++ VF P PKV STV+ +P + K+ + AF RR Sbjct: 175 AVDYYAEVERLFNVPKTVFVPMPKVDSTVLRVVPRKESKVDVDNQDMFFKVVKAAFMNRR 234 Query: 235 KTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITN 274 K + SL +N L +G++ +RAEN++IE F +++N Sbjct: 235 KMVFNSLANGLAVNKDLLKNALLNSGLDEKVRAENITIEQFAKLSN 280 >gi|115611397|ref|XP_001177234.1| PREDICTED: similar to transcription factor B1, mitochondrial [Strongylocentrotus purpuratus] gi|115613229|ref|XP_791286.2| PREDICTED: similar to transcription factor B1, mitochondrial [Strongylocentrotus purpuratus] Length = 259 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 15/249 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ Y + +K++ QNFLLDL + KI +G+L G V E+G GPG +T+ ++ Sbjct: 11 TIREIIRLYGLRAEKHLAQNFLLDLKLTDKIVRQAGNLQGAHVCEVGPGPGGITRSIINR 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 G + ++VIEKD +F P L+ ++ R+ + DD L+V+ F + + Sbjct: 71 GVQDLLVIEKDTRFIPSLEMLTEATEGRVRVACDDILRVNLADAFPHHIKKDWKDDPPNL 130 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174 I+ NLP+N+ L+ W+ AD PF + L FQKEV ER+TA RL Sbjct: 131 HIVGNLPFNVSLPLMLRWLESVADRTGPFSFGRTRMLLTFQKEVAERLTAPPGDDQRSRL 190 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233 S++ + F I F P P++ V+H P +P I + ++K+ + F R Sbjct: 191 SIMAQHLCQVKQCFVIPGAAFVPKPQIDVGVVHLTPLRDPEIDAPFKLVEKLVRSVFHFR 250 Query: 234 RKTLRQSLK 242 +K ++ ++ Sbjct: 251 KKYCKRGVE 259 >gi|307184319|gb|EFN70777.1| Dimethyladenosine transferase 1, mitochondrial [Camponotus floridanus] Length = 348 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 142/292 (48%), Gaps = 26/292 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S++ IL Y++ K + QNFLLD ++ KI SG L G V+E+G GPG LT+ +L Sbjct: 11 SIRDILKLYRLNAIKRLSQNFLLDQRLIDKIISKSGHLTGSQVLEVGPGPGGLTRSILKQ 70 Query: 69 GARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP------- 118 ++++V+EKD++F P +L D +++II DD K++ E F + Sbjct: 71 VPKRLVVVEKDRRFKPTLDMLADSFGAINGQMDIIYDDITKINLENLFPMEEKRDWDDKN 130 Query: 119 --IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I II NLP+N+ T L+ W+ A W +TL FQKEV ER+ A + Sbjct: 131 PDIYIIGNLPFNVSTPLIIKWLHAIAERRGPWAFGRTKMTLTFQKEVAERLVADVSHHQR 190 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ T + F I F P P V V+ F P + P + +KIT+ F Sbjct: 191 CRLSVMAQTWTFPVLRFIIPGSAFVPKPDVDVGVVSFTPLVKPRTQHDFKFFEKITRHVF 250 Query: 231 GKRRKTLRQSLKRLGGENLLHQAG--------IETNLRAENLSIEDFCRITN 274 R+K + ++ L + + G ++ LRA L++ D R+ Sbjct: 251 SFRQKYSIRCIETLFPLDCRKELGLMMYKLSDLDPKLRAFQLTVHDIDRLAT 302 >gi|332524712|ref|ZP_08400911.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rubrivivax benzoatilyticus JA2] gi|332108020|gb|EGJ09244.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rubrivivax benzoatilyticus JA2] Length = 254 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 129/261 (49%), Gaps = 17/261 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQ+FL D I+ I ++ G ++EIG G G +T LL ++ V+E D+ Sbjct: 5 PRKRFGQHFLADDAIIDAIVDAIDPQPGEAMVEIGPGLGAMTMPLLER-IERLTVVELDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWIS 139 L+ + LE+++ D LKVDF + P+R++ NLPYNI T +LF+ + Sbjct: 64 DLAARLRRVKG-----LEVVEADVLKVDFAALAAAAGRPLRVVGNLPYNISTPILFHLLD 118 Query: 140 ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 A E + + QKEV +R+ A S YGRLSV+ WR + D+ P F Sbjct: 119 A------VEHVVDQHFMLQKEVVDRMAAGPGSKDYGRLSVMLQWRYDIESVLDVPPEAFD 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ +P P L ++ AF +RRK LR +L R E + G + Sbjct: 173 PPPRVDSAIVRMLPLPAPEGVDAALLGELVTVAFSQRRKLLRHTLGRW-MEQRGAEVGFD 231 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE + + D+ + + Sbjct: 232 LQRRAEEVPVADYLALARAVA 252 >gi|293399847|ref|ZP_06643993.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306247|gb|EFE47490.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 285 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 14/279 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + + KK GQNFL + ++++KIA S+ D V EIG G G LTQ L A Sbjct: 12 KEILETHDLFAKKNYGQNFLTEPSVVEKIARSAIVSDHCVVFEIGPGIGALTQYLCEY-A 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126 ++V+ E D++ +L D S++ N + ++ D L +D ++ N + I ANLP Sbjct: 71 KEVVCFEIDERLPHVLADTLSEYTN-VSVVLQDFLTIDLREWVNRYREKGMDVVIAANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +LF ++ ++T++ QKEV +R A+ N+ Y LS++T +R Sbjct: 130 YYITTPILFKIFESNAD---IAAITVMMQKEVADRFHAKVNTKEYNALSIITQYRCDVRA 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + + +VF P P V S V+ F + ES + + F +RRKT+ + + Sbjct: 187 VMKVPKNVFHPKPNVDSAVLQFTFRKHYANLKEESFFAMVKACFKQRRKTILNNFQEYCS 246 Query: 247 EN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + L +A I+ RAE+L++++F + ++ D++ Sbjct: 247 DKETAKAYLEKADIDAKRRAESLTLDEFLHLYEVMQDDR 285 >gi|325206459|gb|ADZ01912.1| dimethyladenosine transferase [Neisseria meningitidis M04-240196] Length = 259 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF NI +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|77919444|ref|YP_357259.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380] gi|118600881|sp|Q3A3G8|RSMA_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77545527|gb|ABA89089.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380] Length = 264 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 17/264 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKD 79 PKK GQNFL D ++ I ++ V+EIG G G LT LL AR VI I++D Sbjct: 5 PKKRFGQNFLQDRQVVDGIFAAADLQPEDRVLEIGPGLGALTDRLLPEVARLHVIEIDRD 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + ++ ++L + DALK+D+ P ++IANLPYNI ++++F + Sbjct: 65 -----LGAGLQARDEDKLVVHLGDALKLDWTALLT-DPPYKLIANLPYNISSQIVFKILD 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + L L+FQ+EVGER+ A S +YG LSVL + + P F+P P Sbjct: 119 HRH---LFSRLVLMFQQEVGERLCAGPGSKNYGILSVLCQVWFDIRRVLRVPPGAFYPPP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--KRLGGENL---LHQ 252 KV S V+ F P + +++ + AF +RRKTLR SL LG + L L Sbjct: 176 KVHSAVLCFDALAQPRIVVEDQQFFRRVVKAAFAQRRKTLRNSLTGAGLGFDGLEVSLLD 235 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 AGI+ RAE LS+E+F ++ ++ Sbjct: 236 AGIDPGRRAETLSLEEFGKLAQLI 259 >gi|83025309|gb|ABB95747.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 64 GARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + L FQKEV ERI AQ + R Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNFAQARLKYTLKGGXXVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L + LL I N A +L + DF +I D D Sbjct: 244 KQKTVRKTIGHLFPNXNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|222153745|ref|YP_002562922.1| dimethyladenosine transferase [Streptococcus uberis 0140J] gi|254807888|sp|B9DVT4|RSMA_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|222114558|emb|CAR43508.1| dimethyladenosine transferase [Streptococcus uberis 0140J] Length = 290 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 RAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126 +V+ E D + PIL D N +++I D LK D + +F N P++++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLRDFDN-VQVINQDILKSDLQSQIKQFKNPDLPLKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + I + PF E ++ Q+EV +RI+A+ N+ YG LS+ + A + Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 F + VF P+P V S ++ + P+ + ++ + F RRKTL +L Sbjct: 185 AFIVPKTVFVPAPNVDSAILKMVRRPEPLIEVTDEDFFFRVAKVGFIHRRKTLWNNLTSH 244 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ L A I+ ++R E L+I + ++ + L + Sbjct: 245 FGKTEEIKTKLTQALELADIKPSIRGEALTIPQYGKLADALKE 287 >gi|304388007|ref|ZP_07370178.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091] gi|304337955|gb|EFM04094.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091] gi|325127795|gb|EGC50703.1| dimethyladenosine transferase [Neisseria meningitidis N1568] Length = 259 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF NI +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|78189160|ref|YP_379498.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3] gi|119365013|sp|Q3ARC0|RSMA_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78171359|gb|ABB28455.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3] Length = 263 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 138/262 (52%), Gaps = 12/262 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H ++ KK +GQNFL D NI +K SG+ V+EIG G G LT+ L+ + V Sbjct: 8 HTQVAAKKKLGQNFLTDRNITRKTVLLSGAKPDDQVVEIGPGFGALTRELVE-ECHNLTV 66 Query: 76 IEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 IEKD P L I +++P ++++I+ D L ++F P++I+ N+PY+I + +L Sbjct: 67 IEKD----PTLATFIRNEYP-QIKVIEGDVLTINFSAMAQAGKPLQILGNIPYSITSPIL 121 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + S TL+ Q EV R+ A+ + YG L+V K +F +S V Sbjct: 122 FHLLEHRRA---FRSATLMMQHEVALRLAAKPATKEYGILAVQMQAFCKVEYLFKVSRKV 178 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P PKV S VI PH + ++ + AF +RRKTL +LK L+ Sbjct: 179 FKPQPKVESAVIKLTPHATDPALDADGFRRFVRIAFHQRRKTLLNNLKESYNLELVDSNK 238 Query: 255 IETNLRAENLSIEDFCRITNIL 276 ++ LRAE LSIE+ + +++ Sbjct: 239 LQ--LRAEALSIEELLELFSLI 258 >gi|311104078|ref|YP_003976931.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8] gi|310758767|gb|ADP14216.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8] Length = 263 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++ I + TV+EIG G LT+ LL + +E D+ Sbjct: 7 RKRFGQNFLTDESVVESIVRAVSPARDDTVVEIGPGLSALTRPLLE-RLDHLTAVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ +RL +++ DAL VDF +F +R++ NLPYNI + LLF+ + Sbjct: 66 LAARLR--KQFDASRLTVVEADALTVDFSQF---GPALRVVGNLPYNISSPLLFHLM--- 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 TW + Q+EV +R+ AQ S + RLSV+ R + +FD+ P F P PKV Sbjct: 118 TWAGHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDPPPKV 177 Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 S ++ +P L P+ + + + AF +RRK LR+ L + I Sbjct: 178 VSAIVRMVPLPADRLRPV--SERAFETVVARAFSQRRKMLRRVLADWAAQVPWEALDIAP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE++S++ + R+ + L Sbjct: 236 TARAEDISVDRYIRLADALV 255 >gi|188591258|ref|YP_001795858.1| dimethyladenosine transferase [Cupriavidus taiwanensis LMG 19424] gi|226729776|sp|B2AH89|RSMA_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170938152|emb|CAP63138.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase (kasugamycin resistance) [Cupriavidus taiwanensis LMG 19424] Length = 277 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 24/276 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74 H + +K GQNFL+D I+ I + G ++EIG G G LT LL + +V+ Sbjct: 6 HQGHVARKRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERIPQMQVV 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +++D +++ + ++ RL++ DAL DF+K P+RI+ NLPYNI + LL Sbjct: 66 ELDRD-----LVERLRRRYGERLQVHAGDALDFDFDKLAVPGRPLRIVGNLPYNISSPLL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV ER+ A+ S +GRLS++ R + D+ P Sbjct: 121 FHLME---FADHVHDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGA 177 Query: 195 FFPSPKVTSTVIHFI------------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F P PKV S V+ I PH + C + L + AF +RRK LR +L Sbjct: 178 FNPPPKVDSAVVRMIPWPRHGDGRLRSPHAD---CDITVLGDVVTAAFSQRRKVLRNTLS 234 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + G + RAE + + ++ + L D Sbjct: 235 FLRDQVDFDAMGFDLGRRAEEVPVGEYVELARRLGD 270 >gi|120602408|ref|YP_966808.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4] gi|166221661|sp|A1VD65|RSMA_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120562637|gb|ABM28381.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4] Length = 266 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 6 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 65 Query: 82 F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + P+ +Q ++ DAL +E+ + + P ++I NLPYN+ + L++ Sbjct: 66 WAREHHLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 118 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S P + + QKEVGERI A S YG LSV TK F + PHVF Sbjct: 119 DICSRA---PGLVRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 175 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251 P PKV S V+ F P + P + L + + F +RRK L+ L+ +GG+ LL Sbjct: 176 TPRPKVDSAVLAFTPRTDRPDAVQSKRLAHVLRLCFQQRRKQLQGILRPHVGGDASALLA 235 Query: 252 QAGIETNLRAENLSIEDF 269 + GI+ R E LS E F Sbjct: 236 ELGIDPAARPETLSPERF 253 >gi|297587466|ref|ZP_06946110.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516] gi|297574155|gb|EFH92875.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516] Length = 283 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 18/279 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K IL + K +GQNFL+D N+++ I + S + VIEIG G G LT+ L+ Sbjct: 11 IKEILDKFGFKFSKALGQNFLIDGNLIENIIDFSDITEDDYVIEIGPGFGTLTERLVD-K 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + + IE D + +LK N +II +D LKVD + + + +++ANLPY I Sbjct: 70 CKFLYSIEIDSRLMDVLKYTVGDRDN-FQIINEDVLKVDLNELNHGAKKFKVVANLPYYI 128 Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 T + LFN+ ES+T++ QKEV R+ A S Y LS+ + A + Sbjct: 129 TTPIIEHLFNY------RDIIESITVMIQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------ 240 + + VF P PKV S V++ E L+++ + F KRRKT+ S Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTIVNSFTSGFV 242 Query: 241 -LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + + +L + G++ NLRAENLS+ED+ I L + Sbjct: 243 NVDKDKLKAILQELGLKENLRAENLSLEDYKNIVKKLNN 281 >gi|317402409|gb|EFV82981.1| dimethyladenosine transferase [Achromobacter xylosoxidans C54] Length = 263 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 15/261 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++++ I + G TV+EIG G LT+ LL + +E D+ Sbjct: 7 RKRFGQNFLTDESVVESIVRAVNPARGDTVVEIGPGLSALTRPLLE-RLDHLTAVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + RL +++ DAL VDF +F + +R++ NLPYNI + LLF+ ++ Sbjct: 66 LAARLRKQFEE--GRLTVVEADALTVDFSQF---GAGLRVVGNLPYNISSPLLFHLMA-- 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 W + Q+EV +R+ AQ S + RLSV+ R + +FD+ P F P PKV Sbjct: 119 -WADHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDPPPKV 177 Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 S ++ +P L P+ + + + AF +RRK LR+ L + I Sbjct: 178 VSAIVRMVPLPAERLRPVSA--RAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDIAP 235 Query: 258 NLRAENLSIEDFCRITNILTD 278 RAE++S++ + +++ L + Sbjct: 236 TARAEDISVDRYIHLSDALVE 256 >gi|254447589|ref|ZP_05061055.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015] gi|198262932|gb|EDY87211.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015] Length = 226 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 +EIG G G LT L + +E D+ P L+ + H RL I + DALK DF Sbjct: 1 MEIGPGLGALTAPALE-RVEHMDAVELDRDLIPKLQTLD--HAERLTIHECDALKFDFAA 57 Query: 112 FFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 + P+R+I NLPYNI + L+F+ + + + + QKEV ER+ A + Sbjct: 58 LGKLRDKPLRVIGNLPYNISSPLIFHLLHNAEC---IQDMHFMLQKEVVERLAASPGTGD 114 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLES-LKKITQE 228 YGRLSV + + +F + P F P+PKV S ++ P P+ P L+ L+ + + Sbjct: 115 YGRLSVAVQAQCRVRYLFTVPPGCFTPAPKVDSAIVRLEPLDEPLCPKALQGPLEDLLRT 174 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 AF +RRKTLR +LK L + GI+ +LR E L +EDF R+ LT Sbjct: 175 AFHQRRKTLRNNLKGLLSSEAIEACGIDPSLRPERLCVEDFVRLVKALT 223 >gi|83025299|gb|ABB95742.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 149/297 (50%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 64 GARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWESLTLL-FQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + +L FQKEV ERI A+ + R Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIARPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|25141369|ref|NP_491242.2| hypothetical protein T03F1.7 [Caenorhabditis elegans] gi|74961647|sp|P91424|TFB1M_CAEEL RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|20451250|gb|AAB42235.2| Hypothetical protein T03F1.7 [Caenorhabditis elegans] Length = 367 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 145/289 (50%), Gaps = 28/289 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ + Y++ KK + QN+L+D+NI +KIA+ + ++ VIEIG GPG +T+ +L Sbjct: 12 ALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGITRAILEA 71 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----------- 117 GA ++ V+E D +F P L+ ++ +R+ I DAL+ + + + Sbjct: 72 GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKNETARPESVDWHDS 131 Query: 118 ---PIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + +I NLP+NI + L+ ++ W LTL FQ EV +R+ + Sbjct: 132 NLPAMHVIGNLPFNIASPLIIKYLRDMSYRRGVWQYGRVPLTLTFQLEVAKRLCSPIACD 191 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228 R+S+++ + + M+F IS F P P+V V+ F+P P + E L+K+ ++ Sbjct: 192 TRSRISIMSQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVLEKVCRQ 251 Query: 229 AFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF 269 F R+K + + LK L E +LL + I+ + L IE F Sbjct: 252 VFHYRQKYVTKGLKTLYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQF 300 >gi|160914684|ref|ZP_02076898.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991] gi|158433224|gb|EDP11513.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991] Length = 285 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 141/277 (50%), Gaps = 14/277 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ + + KK GQNFL++ ++++KIA S+ EIG G G LTQ L A Sbjct: 12 KEILAKHDVFAKKNYGQNFLIEPSVVEKIARSAIGEKKCVAFEIGPGIGALTQYLCEY-A 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +KV+ E D++ +LKD ++ N EI+ D L +D EK+ + + ANLP Sbjct: 71 QKVVSFEIDERLPEVLKDTLQEYDN-FEIVLQDFLTIDLNAWVEKYRQEGYEVVVAANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +LF A+ S+T++ QKEV +R A+ N+ Y LSV+T +R + + Sbjct: 130 YYITTPILFKIFEAEAN---ISSITVMMQKEVADRFYAKVNTKDYNALSVITQYRCEVSP 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL----- 241 + + +VF P P V S V+ F E ++ + F +RRKT+ + Sbjct: 187 VMKVPKNVFMPKPNVDSAVLQFRFKQRNENIEEEVFFEMVKACFKQRRKTMLNNFGEYLQ 246 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + LL QA I+ R E++S+ +F + ++ + Sbjct: 247 DKAKAMALLEQANIDPKRRGESVSLAEFLVLYEVMRN 283 >gi|313893343|ref|ZP_07826917.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442112|gb|EFR60530.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str. F0412] Length = 284 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGA-D 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + I+ D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + P E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P VTS+VI + P+ E L ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLSKDR 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277 >gi|238019586|ref|ZP_04600012.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748] gi|237863784|gb|EEP65074.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748] Length = 284 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGA-D 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + I+ D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + P E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P VTS+VI + P+ E L ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277 >gi|261377894|ref|ZP_05982467.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685] gi|269145748|gb|EEZ72166.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685] Length = 261 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 133/264 (50%), Gaps = 15/264 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE D+ Sbjct: 7 RKRFGQNFLQDTRIINDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVATPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILTDNQD 281 RAE+++ E + ++N LT D Sbjct: 236 QDRAEHVAPEKYVALSNYLTGKAD 259 >gi|241888685|ref|ZP_04775992.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379] gi|241864708|gb|EER69083.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379] Length = 286 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 135/268 (50%), Gaps = 16/268 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + KK +GQNFL+D NIL +I + +G + VIEIG G G+LT+ L A+K Sbjct: 11 ILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNGNVGVIEIGPGIGSLTEALAK-KAKK 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128 VI E D + PIL + + +PN +EII +D LKVD +K + I ++ANLPY Sbjct: 70 VISFEIDGRLLPILSETLADYPN-VEIINNDILKVDVDKIIAEKMSDCEKIMVVANLPYY 128 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + I + ++ QKEV R+ A+ + Y L++L + T +F Sbjct: 129 ITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILLNYYTNVEYLF 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241 + VF P+P V S V+ + K + F +RRKTL +L Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLLNNLISSYGKD 245 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269 K+ +N + IE R+E LS+ +F Sbjct: 246 KKQDLQNACVDSDIEPGRRSETLSLVEF 273 >gi|84490322|ref|YP_448554.1| dimethyladenosine transferase [Methanosphaera stadtmanae DSM 3091] gi|119365032|sp|Q2NE42|RSMA_METST RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|84373641|gb|ABC57911.1| KsgA [Methanosphaera stadtmanae DSM 3091] Length = 271 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 129/238 (54%), Gaps = 15/238 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y I QN+L+D N L I E++ D T++EIGAG G LT + + A Sbjct: 5 KEILEKYNIKLDTNKSQNYLIDDNKLNIILENADIQDNETILEIGAGIGTLT-LPMAKKA 63 Query: 71 RKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +KVI IEKD ILK I + +EII+DDALKVDF KF ++++NLPY I Sbjct: 64 KKVIAIEKDPIIVDILKQQIIKEKLTNIEIIKDDALKVDFPKFD------KVVSNLPYQI 117 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + PF +++ L++Q E +R+ A+ ++ Y RLSV +R ++ Sbjct: 118 SSPVTFKLLEY----PFKKAI-LMYQLEFAKRMQAKPDTHEYSRLSVALSYRADTKIIDT 172 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLG 245 + P F P PK+ S VI IP N PI L+ +++ + Q K +K L QS LG Sbjct: 173 LPPEAFIPKPKIKSAVIELIPKNNKPIDKLLDNTIRALFQHRNKKAKKALIQSAHELG 230 >gi|118580905|ref|YP_902155.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379] gi|118503615|gb|ABL00098.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379] Length = 271 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 134/266 (50%), Gaps = 14/266 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K +GQNFL+D NI+++I + V+E+G G G LT L AR ++++E D Sbjct: 7 PLKSLGQNFLVDRNIVERIIRGAALEPDDQVLEVGPGRGALTAHLSERVAR-LLLVEYDH 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS 139 L + ++ R+ +I D L VD E +++ANLPYNI T++LF ++ Sbjct: 66 ALADELSERYREN-QRVRVIDGDILAVDLEALLEDGDKRWKVVANLPYNISTQVLFRFLE 124 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + L+ QKEVG+R+TA + YG +V+ G F + P F P P Sbjct: 125 LRSR---LSRMLLMLQKEVGDRLTALPDCSDYGVTTVILGLWFDIRREFVVPPGCFHPRP 181 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL------GGENLLH 251 +V S V+ F P P E +++ + AF RRKTL LKR G LL Sbjct: 182 RVDSVVLSFTPLDAPRAQVGDEEIFRRVVKCAFATRRKTLFNCLKRGELVAPDGVAELLE 241 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 GI+ R E LS+E+F R++ L+ Sbjct: 242 SCGIDGRRRGETLSLEEFARLSRHLS 267 >gi|62184932|ref|YP_219717.1| dimethyladenosine transferase [Chlamydophila abortus S26/3] gi|81312896|sp|Q5L6H5|RSMA_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62147999|emb|CAH63750.1| dimethyladenosine transferase [Chlamydophila abortus S26/3] Length = 278 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 140/266 (52%), Gaps = 19/266 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK + QNFL+D NIL+KI S G V+EIG G G LT++L+ GA V+ +EKD Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAH-VVALEKDS 78 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFN-W 137 +L++ Q P LEI DA K + + R++ANLPY+I T LL + Sbjct: 79 ----MLEETLKQLPIHLEIT--DACKYPLSQLQDQGWQGKGRVVANLPYHITTPLLRKLF 132 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + A P W+++T++ Q EV RITAQ YG L++ + F +SP F P Sbjct: 133 LEA---PNQWKTVTVMIQDEVARRITAQPGGKEYGSLTIFLQFFVDVHYAFKVSPGCFLP 189 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGE----NLLH 251 P+V S V+H N P+ L + +T+ AFG+RRK L +LK L + L Sbjct: 190 KPQVASAVVHMTVKENFPLEEPLRTKFFSLTRAAFGQRRKLLANALKDLYPKERVFEALS 249 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 Q R E LS++D+ ++ +L+ Sbjct: 250 QLHFSDKTRPETLSLDDYLKLFYLLS 275 >gi|294786234|ref|ZP_06751488.1| dimethyladenosine transferase [Parascardovia denticolens F0305] gi|315225768|ref|ZP_07867556.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105] gi|294485067|gb|EFG32701.1| dimethyladenosine transferase [Parascardovia denticolens F0305] gi|315119900|gb|EFT83032.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105] Length = 291 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 145/279 (51%), Gaps = 15/279 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++IA VIE+G G G+LT LL Sbjct: 14 AADIRRIAASTGINPTKRFGQNFVVDPGTVRRIARLGDLGPDSRVIEVGPGLGSLTLALL 73 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNI-SSPI-- 119 GA +V+ +E D + +L + +Q P +R +I++DAL++ ++ I SP+ Sbjct: 74 ETGA-QVLAVEIDPRLADLLPSTVRAQMPQAMSRFHLIREDALQLGLDQVEEIFGSPLPQ 132 Query: 120 -RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +++NLPYN+ T ++ + P S T++ QKEV +R+TAQ S YG SV Sbjct: 133 LTLMSNLPYNVATPIILTLLERF---PSLASFTVMVQKEVADRLTAQPGSKIYGVPSVKL 189 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRK 235 W +A + VF+P+P V S ++ F + P E + AF +RRK Sbjct: 190 AWYGQAKPAGIVGASVFWPAPHVDSALVAFTRYDQGQGPRTDLRERTFTLVDAAFSQRRK 249 Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 TL +LK++ +AGI+ R E L++E+F R+ + Sbjct: 250 TLHAALKKMVPTAAFEKAGIDPTRRGETLTMEEFTRLAS 288 >gi|198466094|ref|XP_001353894.2| GA20255 [Drosophila pseudoobscura pseudoobscura] gi|224471856|sp|Q2LZ79|TFB1M_DROPS RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|198150443|gb|EAL29629.2| GA20255 [Drosophila pseudoobscura pseudoobscura] Length = 337 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 152/291 (52%), Gaps = 23/291 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 +++ ++ YK+ K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 20 TIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRSILR 79 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 +++I++EKD++F +L++ +S +++I DD L+ + E+ + + I +I Sbjct: 80 RQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDTTQRIHLIG 139 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP++I TRLL NW + A F + +TL FQKEV ERI A S RLSV++ Sbjct: 140 NLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLSVMS 199 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ M F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 200 QIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSL--VERVVRHIFSMRQK 257 Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R+ L + L +A + LR+ LS+ R+ + + Sbjct: 258 YCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308 >gi|86134822|ref|ZP_01053404.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152] gi|85821685|gb|EAQ42832.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152] Length = 267 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/266 (35%), Positives = 139/266 (52%), Gaps = 14/266 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D +I K IA++ V+EIG G G LT+ LL K V+E D++ Sbjct: 6 KKHLGQHFLTDESIAKDIADALTEEGYNHVLEIGPGMGVLTKYLLQ-KKPKTTVLELDRE 64 Query: 82 FFPILKDISS-QHPN------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 LK++ +H N +II+ D LK D + FN + II N PYNI T+++ Sbjct: 65 SVSYLKEVFPIEHLNLNTTSDNFQIIEGDFLKKDLQTLFN-KEQVAIIGNFPYNISTQIV 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + P + + FQKEV +RI ++ S YG LSVLT +F + P V Sbjct: 124 FKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGILSVLTQAFFDVEYLFTVPPTV 180 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S VI I + +P + ++ + AF +RRK LR SLK + L + Sbjct: 181 FNPPPKVDSGVIRLIRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSFKLSDSLKED 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I R E LS+++F +T + +N Sbjct: 241 PIFAR-RPEQLSVQEFISLTQKIANN 265 >gi|187927497|ref|YP_001897984.1| dimethyladenosine transferase [Ralstonia pickettii 12J] gi|309779801|ref|ZP_07674556.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA] gi|187724387|gb|ACD25552.1| dimethyladenosine transferase [Ralstonia pickettii 12J] gi|308921378|gb|EFP67020.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA] Length = 281 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 128/263 (48%), Gaps = 11/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL+D ++ I + ++EIG G G LT L+ R + V+E D+ Sbjct: 15 RKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQVVELDRD 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ + + +RL + DAL DF P+RI+ NLPYNI + LLF+ Sbjct: 74 ---LVARLQQRFGDRLIVHAGDALAFDFGSLQEAGRPLRIVGNLPYNISSPLLFHLA--- 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T+ + QKEV +R+ A S + RLSV+ R ++ D+ P F P PKV Sbjct: 128 TFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPPKV 187 Query: 202 TSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 S V+ IP +P P L +L + AF +RRK LR +L L G + Sbjct: 188 DSAVVRMIPWPADKSPYAPVDLRALGTVVTMAFSQRRKVLRNTLGALRDVIDFEALGFDL 247 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 RAE +S+EDF + N L N+ Sbjct: 248 GRRAEEVSVEDFVAVANALPANR 270 >gi|294793453|ref|ZP_06758590.1| dimethyladenosine transferase [Veillonella sp. 3_1_44] gi|294455023|gb|EFG23395.1| dimethyladenosine transferase [Veillonella sp. 3_1_44] Length = 284 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGA-D 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + II D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + P E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P VTS+VI + P+ E L ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277 >gi|32490769|ref|NP_871023.1| hypothetical protein WGLp020 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340186|sp|Q8D3I1|RSMA_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|25165975|dbj|BAC24166.1| ksgA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 261 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 143/257 (55%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K +GQNFL D I+KKI +IEIG G G LT + ++ ++ + IE D+ Sbjct: 4 PIKKLGQNFLKDKKIIKKIINFINPKYKDKIIEIGPGLGALT-IPISKISKSITAIEIDK 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 + + N L II D +K++ +KFF+ P+RI +LPYNI L+FN+I Sbjct: 63 NLV-YFLNKNKNIKNNLNIINIDIMKLNLKKFFSSFCDPVRIFGSLPYNISVSLMFNFI- 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + + + QKEV +RI A+ N+ HYG +SV+ + + DIS F P P Sbjct: 121 -ENYNKIID-MHFVIQKEVAQRILARPNNKHYGYISVIMQYYFYVEKLIDISNCAFKPIP 178 Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S++I PH + P P C ++ +K + + AF +RRK L+ SLK+ + I Sbjct: 179 KVQSSLIRMRPHKVCPFPFCDIDKMKVLLKSAFNQRRKMLKNSLKKYFSVEQIILYKINP 238 Query: 258 NLRAENLSIEDFCRITN 274 LRAENLSIE++C ++N Sbjct: 239 KLRAENLSIENYCNLSN 255 >gi|315924856|ref|ZP_07921073.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621755|gb|EFV01719.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 295 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 137/280 (48%), Gaps = 16/280 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ ++ +++ K GQNFL+D +IL KIA + TVIEIG G G LT+ L + Sbjct: 9 VEALMQRHELHFNKRFGQNFLIDDHILDKIARAGDLTPTDTVIEIGPGIGTLTREL-SAR 67 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125 A +VI +E D + P L + + N + ++ D LK D ++P ++++ANL Sbjct: 68 AGQVIAVEIDHKLIPALGETLADCGN-VHVVNADVLKTDLAALVAEAAPGTARLKVVANL 126 Query: 126 PYNIGTRLLFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 PY I T ++ + WP + L Q+EVGERI A YG LS+ + + Sbjct: 127 PYYITTPIMMQLLET-RWPDGVALAQMVFLVQREVGERICAAPGGKIYGSLSIACQYYAR 185 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL- 241 + F + VF P PKV S VI P P + ++ + AF RRKTL SL Sbjct: 186 PEIAFAVPATVFMPRPKVDSVVIAMKKATPPYAPSDPDQFFRVVKAAFMNRRKTLINSLT 245 Query: 242 --KRLGGENLL---HQAGIETNLRAENLSIEDFCRITNIL 276 + LL +AGI+ +RAE L FC + N L Sbjct: 246 TNTAYTKDQLLAAMAEAGIDPKVRAEKLDGTGFCALANAL 285 >gi|62900547|sp|Q72B41|RSMA_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|46449624|gb|AAS96274.1| dimethyladenosine transferase [Desulfovibrio vulgaris str. Hildenborough] Length = 266 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 6 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 65 Query: 82 F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + P+ +Q ++ DAL +E+ + + P ++I NLPYN+ + L++ Sbjct: 66 WAREHRLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 118 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S P + + QKEVGERI A S YG LSV TK F + PHVF Sbjct: 119 DICSRA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 175 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251 P PKV S V+ F P + P + L ++ + F +RRK L+ L+ +GG+ LL Sbjct: 176 TPRPKVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLA 235 Query: 252 QAGIETNLRAENLSIEDF 269 GI+ R E LS E F Sbjct: 236 GLGIDPAARPETLSPERF 253 >gi|326692423|ref|ZP_08229428.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Leuconostoc argentinum KCTC 3773] Length = 295 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 142/276 (51%), Gaps = 19/276 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + KK GQNFL DL++L I E++ VIEIG G G LT+ L A Sbjct: 14 QAILTQYGLHAKKKFGQNFLTDLSVLHGIVETAEITADDYVIEIGPGIGALTEQL-ARRA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 ++V+ E D Q +L + + N + +++ D LKVD + F + + ++++ANLP Sbjct: 73 KRVLAFEIDPQMVAVLAETLQPYDN-VTVVEQDILKVDLAQMIATEFGVGARVKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + ++ W+++ ++ Q+EV +R+ A + YG L++ + +AT+ Sbjct: 132 YYITTPILMQLLRSNIA---WDNIVVMMQREVADRLNAAVGTKAYGVLTLTVAYFAQATL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLG 245 ++ F PSP V S V+ PH I E L + + +F RRK+L ++ + Sbjct: 189 AINVPATSFNPSPNVDSAVVKLTPHTPEIVVDQPERLFGVIKRSFSHRRKSLWNNMIQTY 248 Query: 246 GEN---------LLHQAGIETNLRAENLSIEDFCRI 272 G++ L I ++RAE L + F ++ Sbjct: 249 GKDAETKEKITAALAATDIAPSIRAERLDLTQFTQL 284 >gi|297572123|ref|YP_003697897.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM 20595] gi|296932470|gb|ADH93278.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM 20595] Length = 301 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 33/289 (11%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + I P K +GQNF+ D +++I +G G V+E+G G G+LT +L G Sbjct: 14 IRELAATFGIRPTKTLGQNFVHDAGTVRRIVRDAGVQAGDHVVEVGPGLGSLTLAILETG 73 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKV----------------DF 109 A + IE D L ++ + R + DA+++ D Sbjct: 74 A-VLSAIEIDPPLADALPGTIAEVQPESSERFAVTNRDAMEIHSVADLAVPRVVGEGGDS 132 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 +F +P ++ANLPYN+ +L + + P E++T++ Q EV +R+ A+ S Sbjct: 133 AEF----TPKHLVANLPYNVAVPVLLTLLESL---PTLETVTVMVQLEVADRLAAEPGSK 185 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 YG SV W IS +VF+P P V S ++H H P E++ + A Sbjct: 186 VYGVPSVKANWYADVWRGAKISRNVFWPVPNVDSALVHMRRHPEPESVDREAVFGVVDAA 245 Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 F +RRKTLR +L G E +L AG++ +LR E L+IE+F I Sbjct: 246 FAQRRKTLRAALGAWAGSPARAEEILRAAGVDPSLRGERLTIENFIAIA 294 >gi|254670514|emb|CBA06283.1| dimethyladenosine transferase [Neisseria meningitidis alpha153] Length = 259 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF NI +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE++ E + ++N L Sbjct: 236 QDRAEHIVPEKYVALSNYLA 255 >gi|189500122|ref|YP_001959592.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1] gi|226729769|sp|B3EQT0|RSMA_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189495563|gb|ACE04111.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1] Length = 262 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 13/255 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +I KK +GQNFL D NI +KI ES+ + V+EIG G G LT +L + R Sbjct: 8 HTEIAVKKKLGQNFLTDQNICRKIVESAQLQENDHVLEIGPGFGALTTAILEVVPR-FTA 66 Query: 76 IEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +EKD+ IL + I +++P+ + +I+ D LK+D E+ + +RI+ N+PY+I T +L Sbjct: 67 VEKDR----ILAEFIRNEYPS-VRVIEMDFLKIDLEELAS-EGRLRIMGNIPYSITTPIL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + D + S TL+ Q EV R+ A S YG L+V T +F ++ V Sbjct: 121 FKLL--DNRRNIF-SETLMMQHEVARRLVASPGSKEYGILAVQLQTFCDVTYLFKVNRTV 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S V+ IP + + +FG+RRKTL +LK+ +++ Sbjct: 178 FKPRPEVDSAVVSIIPKTAIFDADETGFRNFVRTSFGQRRKTLHNNLKKYYDLSMV--TS 235 Query: 255 IETNLRAENLSIEDF 269 I+ LRAE+LS+E F Sbjct: 236 IDLKLRAESLSVEQF 250 >gi|241662027|ref|YP_002980387.1| dimethyladenosine transferase [Ralstonia pickettii 12D] gi|240864054|gb|ACS61715.1| dimethyladenosine transferase [Ralstonia pickettii 12D] Length = 281 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 11/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL+D ++ I + ++EIG G G LT L+ R + V+E D+ Sbjct: 15 RKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQVVELDRD 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ + + +RL + DAL DF + P+RI+ NLPYNI + LLF+ Sbjct: 74 ---LVARLQKRFGDRLVVHAGDALAFDFGALQEVDRPLRIVGNLPYNISSPLLFHLA--- 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T+ + QKEV +R+ A S + RLSV+ R ++ D+ P F P PKV Sbjct: 128 TFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPPKV 187 Query: 202 TSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 S V+ IP +P P + +L + AF +RRK LR +L L G + Sbjct: 188 DSAVVRMIPWPADKSPYAPVDMRALGTVVTMAFSQRRKVLRNTLGALRDVVDFDALGFDL 247 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 + RAE + +EDF + N L N+ Sbjct: 248 SRRAEEVPVEDFVAVANALPANR 270 >gi|311233807|gb|ADP86661.1| dimethyladenosine transferase [Desulfovibrio vulgaris RCH1] Length = 300 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 40 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 99 Query: 82 F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + P+ +Q ++ DAL +E+ + + P ++I NLPYN+ + L++ Sbjct: 100 WAREHRLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 152 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S P + + QKEVGERI A S YG LSV TK F + PHVF Sbjct: 153 DICSRA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 209 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251 P PKV S V+ F P + P + L ++ + F +RRK L+ L+ +GG+ LL Sbjct: 210 TPRPKVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLA 269 Query: 252 QAGIETNLRAENLSIEDF 269 GI+ R E LS E F Sbjct: 270 GLGIDPAARPETLSPERF 287 >gi|15644188|ref|NP_229237.1| dimethyladenosine transferase [Thermotoga maritima MSB8] gi|27151616|sp|Q9X1F1|RSMA_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|4982002|gb|AAD36507.1|AE001795_10 dimethyladenosine transferase [Thermotoga maritima MSB8] Length = 279 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/267 (34%), Positives = 140/267 (52%), Gaps = 20/267 (7%) Query: 4 NNKSHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 + + LKT L Y + KK++GQ FL D I K+I +++ V+EIGAG G L Sbjct: 14 DGEGCDLKTSDYLKKYGVRLKKHLGQVFLSDDRIAKRIVKAAELTPEDVVVEIGAGAGTL 73 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 T+ L GAR VI E D+ PIL++ S++PN +E+ +D LK N+ Sbjct: 74 TEELAKTGAR-VIAYEIDESLAPILQERLSKYPN-VELRFEDFLKAK-----NVPEGAIC 126 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ++N+PYNI L+ I W ++ ++ QKEVGERI A+ YG LSV+ Sbjct: 127 VSNIPYNITGPLMEKIIE---WK--FKRAIVMIQKEVGERILAKPGKKTYGYLSVVVQTF 181 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + +FD+S F P+P+V STV+ P+ E KK F K+RKTL+ +L Sbjct: 182 YEVKKLFDVSRSCFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNL 239 Query: 242 KRLGGENLLHQAGIETNLRAENLSIED 268 + L G++ + RAE L++E+ Sbjct: 240 RPF----LSIFEGVDLSRRAEQLTVEE 262 >gi|329767929|ref|ZP_08259441.1| dimethyladenosine transferase [Gemella haemolysans M341] gi|328838592|gb|EGF88195.1| dimethyladenosine transferase [Gemella haemolysans M341] Length = 286 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 135/268 (50%), Gaps = 16/268 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + KK +GQNFL+D NIL +I + +G + I VIEIG G G+LT+ L A+K Sbjct: 11 ILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNENIGVIEIGPGIGSLTEALAK-KAKK 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128 VI E D + PIL + + + N +EII +D LKVD +K + I ++ANLPY Sbjct: 70 VISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIAEKMSDCEKIMVVANLPYY 128 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + I + ++ QKEV R+ A+ + Y L++L + T +F Sbjct: 129 ITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILLNYYTDVEYLF 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241 + VF P+P V S V+ + K + F +RRKTL +L Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLLNNLISSYGKD 245 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269 K+ +N + IE R+E LS+ +F Sbjct: 246 KKQDLQNACVDSDIEPGRRSETLSLAEF 273 >gi|304569709|ref|YP_011015.2| dimethyladenosine transferase [Desulfovibrio vulgaris str. Hildenborough] Length = 291 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 31 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 90 Query: 82 F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + P+ +Q ++ DAL +E+ + + P ++I NLPYN+ + L++ Sbjct: 91 WAREHRLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 143 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S P + + QKEVGERI A S YG LSV TK F + PHVF Sbjct: 144 DICSRA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 200 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251 P PKV S V+ F P + P + L ++ + F +RRK L+ L+ +GG+ LL Sbjct: 201 TPRPKVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLA 260 Query: 252 QAGIETNLRAENLSIEDF 269 GI+ R E LS E F Sbjct: 261 GLGIDPAARPETLSPERF 278 >gi|255015789|ref|ZP_05287915.1| dimethyladenosine transferase [Bacteroides sp. 2_1_7] gi|256841738|ref|ZP_05547244.1| dimethyladenosine transferase [Parabacteroides sp. D13] gi|262384068|ref|ZP_06077204.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B] gi|298377078|ref|ZP_06987032.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19] gi|256736632|gb|EEU49960.1| dimethyladenosine transferase [Parabacteroides sp. D13] gi|262294966|gb|EEY82898.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B] gi|298266062|gb|EFI07721.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19] Length = 266 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 131/265 (49%), Gaps = 23/265 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + + V+EIG G G LTQ LL G + V+E Sbjct: 4 VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62 Query: 79 D-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D Q FP LK II +D LK+D K F +I N PYNI + Sbjct: 63 DMESVDYLNQNFPDLKG---------RIIAEDFLKLDLSKLF--PGQFCVIGNYPYNISS 111 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ F + P + QKEV ER+ A S YG LSVL +F +S Sbjct: 112 QIFFKVLDYKDQIPCCSG---MLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVS 168 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S V+ + C E L K + + +F +RRKTLR S+K L G++ Sbjct: 169 EKVFDPPPKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCP 228 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + R E LS+E F +T I Sbjct: 229 DYALPIFDKRPEQLSVEQFVELTLI 253 >gi|206891185|ref|YP_002249355.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743123|gb|ACI22180.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 263 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/256 (37%), Positives = 139/256 (54%), Gaps = 14/256 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+FL + IL+KI + S V+EIGAG G+LT++LL A++VI IE D + Sbjct: 12 LGQHFLRNAEILEKIVKVSEINSNDKVVEIGAGMGDLTEILLK-NAKEVIAIEIDPVLYK 70 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 ILK+ N L +I ++ALK +E+ +++AN+PY I ++F + Sbjct: 71 ILKERFYGKEN-LVLINENALKFPYEEI----GQFKVVANIPYYITKPIIFKLLKLKNLI 125 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 S+TL QKEV ER+ A+ ++ Y LS++ + T+A + F I F P P+V S Sbjct: 126 ----SMTLTIQKEVAERLAAKPSTKAYSALSIIAQYYTQAEIKFYIPASFFNPPPEVESA 181 Query: 205 VIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLR 260 VI +P+ E L KI + AFG+RRK + SLK + E L + GI R Sbjct: 182 VIKMDRRDKSPVEVIDEKLFFKIIKSAFGQRRKMISNSLKSIIDEPKEFLIKIGINPIKR 241 Query: 261 AENLSIEDFCRITNIL 276 E LSIEDF I+N L Sbjct: 242 PEELSIEDFAFISNEL 257 >gi|194869297|ref|XP_001972426.1| GG15524 [Drosophila erecta] gi|190654209|gb|EDV51452.1| GG15524 [Drosophila erecta] Length = 502 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 151/292 (51%), Gaps = 23/292 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 +++ ++ Y++ +K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 192 TIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDSRDLVLEVGPGPGGITRSILR 251 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 ++++++EKD +F +LK+ +S + +I DD L+ + E+ + S I +I Sbjct: 252 RHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHLIG 311 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP+ I TRLL NW+ A F +TL FQ+EV ERI A RLSV++ Sbjct: 312 NLPFAISTRLLINWLEDLAGRRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMS 371 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ M F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 372 QVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPL--VERVVRHIFSMRQK 429 Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L + L +A ++ +R L++E R+ + +++ Sbjct: 430 YCRRGFGTLLPPEDREEVAQKLFQRAEVQDTMRPFELTVEQCLRLAEVYSEH 481 >gi|240016023|ref|ZP_04722563.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA6140] Length = 259 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 131/260 (50%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+SP F P+PK Sbjct: 121 DDVA----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVSPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|302035917|ref|YP_003796239.1| dimethyladenosine transferase [Candidatus Nitrospira defluvii] gi|300603981|emb|CBK40313.1| Dimethyladenosine transferase [Candidatus Nitrospira defluvii] Length = 267 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 131/256 (51%), Gaps = 19/256 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL+D NI++KI + TV+EIG G G LT L R VI +E D Q Sbjct: 10 KRLGQNFLIDPNIIRKIVSLAALGPEDTVLEIGPGRGALTAGLCAEAGR-VIAVEIDPQL 68 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFNWISA 140 P L+D S H L++ DAL FE P+R ++ANLPY + T +LF + A Sbjct: 69 QPHLQD-SLGHCRNLDLRIGDALAFPFETL-----PLRTVVVANLPYYVSTPILFALLDA 122 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + L L+ Q EV R+ A+ NS YG LSVLT + + F +S + F P P Sbjct: 123 RAR---LDRLVLMLQTEVALRLAAKPNSEDYGVLSVLTQEAAEVDLAFRVSANCFRPRPT 179 Query: 201 VTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLH---QA 253 V S V+H P E +++ + +F RRKTL SL+ G E + +A Sbjct: 180 VGSAVVHLRIKTQEGFEPVRHERFRRLVRASFAHRRKTLVNSLRDEGYPPEQIARATAEA 239 Query: 254 GIETNLRAENLSIEDF 269 G+ RAE L+++D+ Sbjct: 240 GVPPQARAEMLTLDDY 255 >gi|170289118|ref|YP_001739356.1| dimethyladenosine transferase [Thermotoga sp. RQ2] gi|226732634|sp|B1LBH5|RSMA_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170176621|gb|ACB09673.1| dimethyladenosine transferase [Thermotoga sp. RQ2] Length = 260 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 136/259 (52%), Gaps = 18/259 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + KK++GQ FL D I K+I +++ V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELTKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ PIL++ S++PN +E+ +D LK ++ ++N+PYNI L Sbjct: 66 IAYEIDESLAPILQERLSKYPN-VELRFEDFLKAK-----DVPEGAICVSNIPYNITGPL 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I W ++ ++ QKEVGERI A+ YG LSV+ + +FD+S Sbjct: 120 MEKIIE---WK--FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V STV+ P+ E KK F K+RKTL+ +LK L Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPF----LSIFE 228 Query: 254 GIETNLRAENLSIEDFCRI 272 G++ + RAE L++E+ + Sbjct: 229 GVDLSRRAEQLTVEEIVEL 247 >gi|282848961|ref|ZP_06258350.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745] gi|282581236|gb|EFB86630.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745] Length = 284 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 139/269 (51%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTAGEPVLEVGPGIGTLTQGLAQSGA-D 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + II D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + P E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFI-PHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P VTS+VI + + P+ E L ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRNKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGLRRGETFTLQEFADVAN 277 >gi|21357273|ref|NP_648499.1| mitochondrial transcription factor B1 [Drosophila melanogaster] gi|74870888|sp|Q9VTM5|TFB1M_DROME RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; AltName: Full=d-mtTFB1; Flags: Precursor gi|17862606|gb|AAL39780.1| LD40326p [Drosophila melanogaster] gi|23093638|gb|AAF50022.2| mitochondrial transcription factor B1 [Drosophila melanogaster] gi|220946184|gb|ACL85635.1| mtTFB1-PA [synthetic construct] gi|220955884|gb|ACL90485.1| mtTFB1-PA [synthetic construct] Length = 330 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 151/292 (51%), Gaps = 23/292 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 +++ ++ Y++ +K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 20 TIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPGGITRSILR 79 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 ++++++EKD +F +LK+ +S + +I DD L+ + E+ + S I +I Sbjct: 80 RHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIG 139 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP+ I TRLL NW+ A F +TL FQ+EV ERI A RLSV++ Sbjct: 140 NLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMS 199 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ M F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 200 QVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHL--VERVVRHIFSMRQK 257 Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L E L +A ++ LR L++E R+ + +++ Sbjct: 258 YCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCLRLAEVYSEH 309 >gi|239818231|ref|YP_002947141.1| dimethyladenosine transferase [Variovorax paradoxus S110] gi|259494262|sp|C5CS95|RSMA_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|239804808|gb|ACS21875.1| dimethyladenosine transferase [Variovorax paradoxus S110] Length = 255 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 15/258 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78 I +K GQ+FL D I+ I + G ++EIG G LTQ L+ LG VI +++ Sbjct: 4 IARKRFGQHFLSDGGIIDAIVQEIAPQPGDAMVEIGPGLAALTQPLVERLGRLTVIELDR 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137 D L +HP LE+I+ D LKVDF ++P+R++ NLPYNI T +LF+ Sbjct: 64 D------LAKRLREHPQ-LEVIESDVLKVDFAALATRFAAPLRVVGNLPYNISTPILFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV +R+ A+ + Y RLSV+ WR + + + P F P Sbjct: 117 LG---FAHLIADQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYRMENVLFVPPESFDP 173 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-IE 256 P+V S V+ +P P L +I Q AF +RRK +R +L + E+ AG + Sbjct: 174 PPRVDSAVVRMVPLAEPPAVDAARLGEIVQVAFSQRRKIMRHTLGKWLDEHGF--AGQFD 231 Query: 257 TNLRAENLSIEDFCRITN 274 RAE + + ++ + Sbjct: 232 AQRRAEEVPVAEYVALAQ 249 >gi|325106005|ref|YP_004275659.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145] gi|324974853|gb|ADY53837.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145] Length = 283 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 136/264 (51%), Gaps = 12/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D NI +KI +S D V+E+G G G L+ LL + +I+ D Sbjct: 26 KKHLGQHFLTDKNIAQKIVDSLIHTDKYKKVLEVGPGMGVLSDFLLQKTDYETYLIDIDT 85 Query: 81 QFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + F L Q+PN + +I D L+++F F P II N PYNI +++LF + Sbjct: 86 ESFEFL---HKQYPNLGDKLINADFLQLNFRDIF--LEPFAIIGNFPYNISSQILFKVLE 140 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + +FQKEV ER A+ S YG LSV K +F + VF P P Sbjct: 141 NRNHVP---EVVGMFQKEVAERCVAKAGSKEYGILSVFLQAYYKCEYLFTVKAGVFNPPP 197 Query: 200 KVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S VI + C E L +I + F +RRKTL +L + + L + + T Sbjct: 198 KVLSAVIRLTRNETETLECNEKLFWQIVKAGFNQRRKTLSNALSGIIKKELQGEEEVWT- 256 Query: 259 LRAENLSIEDFCRITNILTDNQDI 282 LRAE L+++DF +TN++ N+ + Sbjct: 257 LRAERLTVKDFVDLTNLIEQNKSL 280 >gi|121634495|ref|YP_974740.1| dimethyladenosine transferase [Neisseria meningitidis FAM18] gi|166221682|sp|A1KSW0|RSMA_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120866201|emb|CAM09941.1| putative dimethyladenosine transferase [Neisseria meningitidis FAM18] gi|316983672|gb|EFV62653.1| dimethyladenosine transferase [Neisseria meningitidis H44/76] gi|325131849|gb|EGC54549.1| dimethyladenosine transferase [Neisseria meningitidis M6190] gi|325133788|gb|EGC56444.1| dimethyladenosine transferase [Neisseria meningitidis M13399] gi|325137899|gb|EGC60474.1| dimethyladenosine transferase [Neisseria meningitidis ES14902] gi|325143915|gb|EGC66225.1| dimethyladenosine transferase [Neisseria meningitidis M01-240013] gi|325200617|gb|ADY96072.1| dimethyladenosine transferase [Neisseria meningitidis H44/76] Length = 259 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|311743178|ref|ZP_07716986.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272] gi|311313858|gb|EFQ83767.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272] Length = 309 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 18/275 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K GQNF++D N +++I SG V+EIG G G+LT LL + Sbjct: 25 IRRLAEQVGVRPTKQRGQNFVIDANTVRRIVRVSGVGPTDVVVEIGPGLGSLTLALLEV- 83 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 AR+V+ +E D L ++ + P R +E++ DA++V +P ++ANLPY Sbjct: 84 ARRVVAVEIDPALAGGLPATLADRAPGRDVEVVLADAMRV---TELPGPAPTALVANLPY 140 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ +L W A +P L ++ Q EV R+ A S YG SV W + + Sbjct: 141 NVSVPVLLTWFEA--FPSITSGL-VMVQAEVAHRLAAAPGSKIYGVPSVKAAWYAQVELA 197 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKTLRQSLKR 243 + VF+P+P V S ++ + E L++ T AF +RRKTLR +L Sbjct: 198 GTVGRQVFWPAPNVDSALVAWRRRPPGTELGDERLRRTTFAVVDAAFAQRRKTLRAALAG 257 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L G E L AGI+ R E L + D+ R+ Sbjct: 258 LAGSPDVAEAALLAAGIDPRTRGEQLDVHDYVRLA 292 >gi|194748282|ref|XP_001956577.1| GF25284 [Drosophila ananassae] gi|190623859|gb|EDV39383.1| GF25284 [Drosophila ananassae] Length = 330 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 23/292 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLT 67 +++ ++ YK+ K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 20 TIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHSDIVLEVGPGPGGITRSILR 79 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 +++I++EKD++F +L++ + +L+ DD L+ + E + + + +I Sbjct: 80 RQPQRLILVEKDERFGETLQLLRECAKPLNIQLDTYYDDILRFNIEHHVPDTTQRLHLIG 139 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP+ I TRLL NW A F + +TL FQKEV ERI A RLSV++ Sbjct: 140 NLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAPVGGEQRCRLSVMS 199 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ M F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 200 QIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFPL--VERVVRHIFSMRQK 257 Query: 236 TLRQSLKRL----GGE----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L G E NL +A ++ LR+ LS+E R+ + +++ Sbjct: 258 YCRRGYGTLFPQEGREEVTQNLFQRAEVQDTLRSFELSVEQCLRLAEVYSEH 309 >gi|282891871|ref|ZP_06300350.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498131|gb|EFB40471.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 282 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 153/287 (53%), Gaps = 22/287 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + L L+ I PKK + QNFL+D NI++KIA ++ + ++EIG GPG+LT+ L Sbjct: 5 KPNELFAFLNSLGIRPKKGLSQNFLIDGNIIRKIAATAAASSDDVILEIGPGPGSLTECL 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFF----NISSPIR 120 L GA+ VI +EKD Q L I Q P + L++ +D LK E F + Sbjct: 65 LETGAQ-VIAVEKDNQLAEAL--IRLQTPAQTLQVHCEDILKFPIESVFKQELKAGKKAK 121 Query: 121 IIANLPYNIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +IANLPY++ + +L A+ P ++ ++T++ Q+EV R TA S + ++ Sbjct: 122 VIANLPYHLTSSIL-----AELAPLHAYFSTITVMVQEEVARRFTAMPGSREFSAFTLFL 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237 + + F + F+P+PKV S V+ HL P + +T++AF +RRK + Sbjct: 177 NFFSNPVYNFKVGKQCFYPAPKVDSAVMTL--HLKSPPQVDQQGFFTLTRKAFEQRRKMI 234 Query: 238 RQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILTDNQ 280 + +LK + + QA GI +RAE+LS++D+ ++ IL + Sbjct: 235 KSALKSIYEPEKVMQALEGIGINPLVRAEDLSLDDYLKLFAILKKTE 281 >gi|302380914|ref|ZP_07269376.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3] gi|302311292|gb|EFK93311.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3] Length = 283 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 18/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K IL + K +GQNFL+D N+++ I + S + VIEIG G G LT+ L+ Sbjct: 11 IKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVD-K 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + + IE D + +LK N +II +D LKV+ + + +++ANLPY I Sbjct: 70 CKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVNLNELNHEDKKFKVVANLPYYI 128 Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 T + LFN+ ES+T++ QKEV R+ A S Y LS+ + A + Sbjct: 129 TTPIIEHLFNY------RDIIESITVMVQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242 + + VF P PKV S V++ E L+++ + F KRRKT+ S Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILNSFTSGFV 242 Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277 + E L L + G++ NLRAENLS+ED+ I L+ Sbjct: 243 NVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280 >gi|15676595|ref|NP_273739.1| dimethyladenosine transferase [Neisseria meningitidis MC58] gi|27151605|sp|Q9K0B7|RSMA_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|7225925|gb|AAF41114.1| dimethyladenosine transferase [Neisseria meningitidis MC58] gi|325139924|gb|EGC62454.1| dimethyladenosine transferase [Neisseria meningitidis CU385] Length = 259 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|254673623|emb|CBA09163.1| dimethyladenosine transferase [Neisseria meningitidis alpha275] Length = 259 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|150009182|ref|YP_001303925.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC 8503] gi|166221684|sp|A6LF39|RSMA_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149937606|gb|ABR44303.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC 8503] Length = 266 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 131/265 (49%), Gaps = 23/265 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + + V+EIG G G LTQ LL G + V+E Sbjct: 4 VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62 Query: 79 D-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D Q FP LK II +D LK+D K F +I N PYNI + Sbjct: 63 DMESVDYLNQNFPDLKG---------RIIAEDFLKLDLSKLF--PGQFCVIGNYPYNISS 111 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ F + P + QKEV ER+ A S YG LSVL +F +S Sbjct: 112 QIFFKVLDYKDQIPCCSG---MLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVS 168 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S V+ + C E L K + + +F +RRKTLR S+K L G++ Sbjct: 169 EKVFDPPPKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCP 228 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + R E LS+E F +T I Sbjct: 229 DYALPIFDKRPEQLSMEQFVELTLI 253 >gi|299143369|ref|ZP_07036449.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517854|gb|EFI41593.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 288 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 145/278 (52%), Gaps = 16/278 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K L +L+ Y K +GQNFL+D NI++KI +S+ V+EIG G G LT+ L Sbjct: 6 KPARLIELLNKYGFRFSKSLGQNFLIDGNIVRKIVDSAEISSNDNVLEIGPGVGTLTEEL 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRII 122 L A+KV+ IE D +LK+ S + N ++II +D LK D +KF +++ Sbjct: 66 -CLRAKKVVSIEIDNHLKELLKE-SLPYEN-VKIIFNDVLKTDLKKFTEQEFGGETFKVV 122 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ I D ES+T++ QKEV R +A ++ YG LSV + + Sbjct: 123 ANLPYYVTTPIISKLIEEDLN---IESITVMIQKEVANRFSASPSTKDYGSLSVFIQFYS 179 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F + +VF P P V S V++ + + L K+ + AF KRRKTL +L Sbjct: 180 DVKYEFTVPKNVFMPKPNVDSAVVNLKIKKDLPDIDRDKLFKVVRAAFSKRRKTLINALS 239 Query: 243 RLG---GENLLHQA----GIETNLRAENLSIEDFCRIT 273 G +N + +A I+ RAE LS E+F ++ Sbjct: 240 SYGFNIDKNEILKALSISNIDEKRRAETLSSEEFIVLS 277 >gi|218780962|ref|YP_002432280.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans AK-01] gi|218762346|gb|ACL04812.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans AK-01] Length = 289 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 147/280 (52%), Gaps = 15/280 (5%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 NN++ S K +L+ + + PKK GQNFL D + E + +V+EIG G G LT Sbjct: 7 NNRALSAKALLAAFDLKPKKAKGQNFLADPATARACVERADLSPDDSVLEIGPGLGALT- 65 Query: 64 MLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + ++ A++VI +E D +L++ I S + + I+ D LK D + ++ Sbjct: 66 IPMSRKAKQVIAVEWDTNLAKVLENQIESLGLSNITILNQDILKTDIRGIAERAGGNMVV 125 Query: 123 A-NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 A NLPYNI +++L I ++ L+FQ E+ +RI A+ YGR++VL + Sbjct: 126 AANLPYNISSQVLIRLIQNRD---LFKKAALMFQTELAQRIMAEPGGKDYGRITVLAQYS 182 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQS 240 ++ +++ + P F+P P+V S V+ F+ P P E L + + AF KRRKTL+ + Sbjct: 183 SRIRVLYSLGPAHFYPKPQVDSQVLEFL-FKEPDPSVNEDILFAVVKAAFAKRRKTLKNA 241 Query: 241 LKR----LGGEN---LLHQAGIETNLRAENLSIEDFCRIT 273 L GE L +AGI+ RAE LS+++F + Sbjct: 242 LSNSELPFSGEQAQAALDEAGIDPKRRAETLSVDEFVALA 281 >gi|83025297|gb|ABB95741.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 24/297 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L+ Sbjct: 4 STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118 GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + SP Sbjct: 64 GARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123 Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173 IR+++NLP+NI R + + + D + L FQKEV ERI A+ + R Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAXDNLFSYGRVPAVLTFQKEVAERIIARPGDRNRSR 183 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LSVL +A + + + F P+ V V+ +P P I L+K+ F Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243 Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 ++K +R+++ L +N L +A I N A +L + DF +I D D Sbjct: 244 KQKXVRKTIGHLFPNQNRLERAXILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|255068286|ref|ZP_05320141.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256] gi|255047478|gb|EET42942.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256] Length = 259 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE D+ Sbjct: 7 RKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF +I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G+ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGISP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVELSNYLV 255 >gi|227486185|ref|ZP_03916501.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC 51172] gi|227235816|gb|EEI85831.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC 51172] Length = 280 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 143/276 (51%), Gaps = 17/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTL 68 +K I+ Y K +GQNFL+D N + KI E + + G VIE+G G G ++ +M T Sbjct: 10 VKDIIDLYGFRFSKSLGQNFLIDKNFVDKIVEGA-DIAGKNVIEVGPGIGTISYEMAKT- 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIAN 124 +K+++IE D PIL++ S N + II D LK D +K +F ++N Sbjct: 68 -CKKLVLIEIDSSLIPILEENMSDFDN-VTIIHQDILKTDLKKIQDEYFG-GEAFDFVSN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T ++ D S+T++ QKEV +R+ A + Y LSV + ++A Sbjct: 125 LPYYITTPIIEKIFEEDLD---CHSMTIMVQKEVADRMLATEKDKDYSSLSVFVKYYSEA 181 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 ++ + VF P PK+ S+V+ + E L + + F KRRKT+ SL + Sbjct: 182 RLLTKVPKSVFMPQPKIDSSVLRLDLRIYDEKVNKERLFALVKAGFLKRRKTILNSLSAV 241 Query: 245 GGENLLHQA----GIETNLRAENLSIEDFCRITNIL 276 ++ L + ++ NLRAENLS++D+ +I N L Sbjct: 242 AEKDDLKKVFEILNLKENLRAENLSLDDYIKIVNEL 277 >gi|229816980|ref|ZP_04447262.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM 20098] gi|229785725|gb|EEP21839.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM 20098] Length = 296 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 136/282 (48%), Gaps = 13/282 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 16 AADIRRIADEAGVSPTKKFGQNFVIDPGTVRRIVREAHVEADTHVLEVGPGLGSLTLAIL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + ++ RL I+ DAL VD F P Sbjct: 76 ETGA-TMTAVEIDPPLAERLPNTVAEFMPDASKRLSIVNRDALTVDPATLPEFADGKPFT 134 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D +S ++ QKEV +R+ A + YG SV Sbjct: 135 LVANLPYNVATPILLTLLERFDNL----DSFLVMVQKEVADRLAATPGNKIYGTPSVKLA 190 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLR 238 W +A + I +VF+P+P V S ++HF P P L E + AFG+RRKTL Sbjct: 191 WYGEAKRVGTIGRNVFWPAPNVDSALVHFQRFGTPRPQELRERTFSLIDAAFGQRRKTLH 250 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK++ AGI+ R E L+I++F + + N+ Sbjct: 251 AALKKIVPAEAFEAAGIDPTRRGETLTIDEFVALATAMEGNE 292 >gi|313115046|ref|ZP_07800536.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622608|gb|EFQ06073.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii KLE1255] Length = 287 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 24/283 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + Y K GQNF+++ + KI ++SG VIEIG G G LT+ L Sbjct: 13 IRALCEKYDFALSKGFGQNFIINPGLPPKIVDASGVDKRYGVIEIGPGIGVLTRELAKRA 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124 A KV+ IE D++ P+L + + N +++ D LKVD E+F + P+ + AN Sbjct: 73 A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM--PVAVCAN 128 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I + ++ + D P ESLT++ QKE +R+ A + +S + + Sbjct: 129 LPYYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAAPGTRASSAISCAVSYYATS 185 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQS 240 MMF +P F+P+PKVTS V+ + P P E + + AFG+RRKT + Sbjct: 186 KMMFTAAPGSFYPAPKVTSAVVRM--EIRPQPAVQVEDEEGYFALVRAAFGQRRKTAANA 243 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + G + AG + +R E L++EDF +I L Sbjct: 244 IASGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQQALA 286 >gi|240112378|ref|ZP_04726868.1| dimethyladenosine transferase [Neisseria gonorrhoeae MS11] gi|254493179|ref|ZP_05106350.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae 1291] gi|268598439|ref|ZP_06132606.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae MS11] gi|212278037|gb|ACJ23033.1| KsgA [Neisseria gonorrhoeae] gi|226512219|gb|EEH61564.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae 1291] gi|268582570|gb|EEZ47246.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae MS11] Length = 259 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 130/260 (50%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF NI +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV +R+ A S YGRL V+ + M+ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|86130919|ref|ZP_01049518.1| dimethyladenosine transferase [Dokdonia donghaensis MED134] gi|85818330|gb|EAQ39490.1| dimethyladenosine transferase [Dokdonia donghaensis MED134] Length = 288 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 91/265 (34%), Positives = 140/265 (52%), Gaps = 14/265 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D ++ + I ++ +L+G ++EIG G G LT+ +L A ++ V++ D Sbjct: 27 KKHLGQHFLGDESVARDIGDTL-TLEGYKHILEIGPGTGVLTKYILAKPA-QLTVMDLDT 84 Query: 81 QFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + L+ + +H + +++ D LK D + + P+ I N PYNI T+++F Sbjct: 85 ESIEYLRSSFTLEHKLNDEKFTVLEADFLKYDLDTIYP-GEPLAITGNFPYNISTQIVFK 143 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I P T +FQKEV RI A S YG LSVL A +F + P VF Sbjct: 144 TIEHKERIP---EFTGMFQKEVAARICADHGSKTYGILSVLAQAFYDAEYLFTVPPTVFI 200 Query: 197 PSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ N I C E L K+ + AF +RRKTLR SLK +G + ++ Sbjct: 201 PPPKVDSGVLRLKRKENFKDIGCTEEMLFKVVKMAFQQRRKTLRNSLKGMGLSDCFRESE 260 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 I N R E +S++ F +T +T + Sbjct: 261 I-LNKRPEQISVQGFIELTAAITKD 284 >gi|285019524|ref|YP_003377235.1| dimethyladenosine transferase [Xanthomonas albilineans GPE PC73] gi|283474742|emb|CBA17241.1| probable dimethyladenosine transferase protein [Xanthomonas albilineans] Length = 264 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 127/261 (48%), Gaps = 18/261 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL D + + I + G ++EIG G G +T LL ++ VIE D+ Sbjct: 12 KKSLGQHFLSDRHYIDNIVRAVDPKPGDRLVEIGPGQGAITFPLLRRHG-QLTVIEFDRD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ + L I+ D L VDF IR++ NLPYNI + +LF+ + Sbjct: 71 LIEPLT-TAAANLGELTILHRDVLSVDFGAMAG-DGRIRLVGNLPYNISSPILFHALDHA 128 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PKV Sbjct: 129 AA---ITDMHFMLQKEVVDRMAAAPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPKV 185 Query: 202 TSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 S V+ +P +P + + AFG+RRKTLR +L + AG Sbjct: 186 DSAVVRLVPRTAQEVGIADP-----RRFADVVRAAFGQRRKTLRNALNGVCDAPQFEAAG 240 Query: 255 IETNLRAENLSIEDFCRITNI 275 + + RAE L++ DF R+ N+ Sbjct: 241 VRADARAEQLAVADFVRLANL 261 >gi|241759911|ref|ZP_04758011.1| dimethyladenosine transferase [Neisseria flavescens SK114] gi|241319919|gb|EER56315.1| dimethyladenosine transferase [Neisseria flavescens SK114] Length = 263 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L+ ++ V E D+ Sbjct: 11 RKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLVK-KLNRLHVCEIDRD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF +I +I+ NLPYNI T LLF ++ Sbjct: 70 IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSEVA 124 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P+P Sbjct: 125 DDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPAP 179 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 180 KVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 239 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 240 QDRAEHIAAEKYVELSNYLV 259 >gi|301310976|ref|ZP_07216905.1| dimethyladenosine transferase [Bacteroides sp. 20_3] gi|300831039|gb|EFK61680.1| dimethyladenosine transferase [Bacteroides sp. 20_3] Length = 266 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 131/265 (49%), Gaps = 23/265 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + + V+EIG G G LTQ LL G + V+E Sbjct: 4 VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62 Query: 79 DQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D + FP LK II +D LK+D K F +I N PYNI + Sbjct: 63 DMESVDYLNLNFPDLKG---------RIIAEDFLKLDLSKLF--PGQFCVIGNYPYNISS 111 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ F + P + QKEV ER+ A S YG LSVL +F +S Sbjct: 112 QIFFKVLDYKDQIPCCSG---MLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVS 168 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S V+ + C E L K + + +F +RRKTLR S+K L G++ Sbjct: 169 EKVFDPPPKVKSAVLKITRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCP 228 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 A + R E LS+E F +T I Sbjct: 229 DYALPIFDKRPEQLSVEQFVELTLI 253 >gi|323143362|ref|ZP_08078050.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066] gi|322416880|gb|EFY07526.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066] Length = 269 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 134/261 (51%), Gaps = 10/261 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL+D I+ I ++ +G ++EIG G LT+ +L A+ + IE D+ Sbjct: 11 RKRFGQNFLVDDFIIGAIVDAINPKEGDYLVEIGPGHAALTRPVLE-RAKALTAIELDRD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 IL+ S L +I+ DALKV+FE S +R+ NLPYNI + ++F+ +S Sbjct: 70 LAAILR--SDPFLKGLTLIEADALKVNFEALPG-SGDLRVFGNLPYNITSPIIFHLLSQR 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +R+ A + YGRL+V+ + + + D+ P F P PKV Sbjct: 127 GI----KDMHFMLQKEVVDRLCAGPHCRDYGRLTVMVQYHAEVIPVLDVPPEAFRPRPKV 182 Query: 202 TSTVIHFIP-HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S V+ P +L L L + AF RRKTLR SL L + I+T L Sbjct: 183 NSAVVRLKPKNLTDDERALAPFLNTVALNAFNTRRKTLRNSLSTLFCTEEMQDLNIDTTL 242 Query: 260 RAENLSIEDFCRITNILTDNQ 280 RAE+L++ F + L D + Sbjct: 243 RAEDLNLASFVVLAKALRDKK 263 >gi|329118095|ref|ZP_08246807.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465755|gb|EGF12028.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 136/261 (52%), Gaps = 19/261 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKD 79 +K GQNFL D I+ I + TVIEIG G L + L A+ ++ V+E D Sbjct: 17 RKRFGQNFLQDTRIIADIVNAVRPQPDDTVIEIGPG---LAAITAPLAAKLNRLHVVEID 73 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-- 137 + LK++ ++L I + D L+ DF +I+ +I+ NLPYNI T LLF Sbjct: 74 RDIVARLKNLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFRLSE 128 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I+ D + + QKEV ER+TA S YGRLSV+ + + + ++ P F P Sbjct: 129 IADDVA-----DMHFMLQKEVVERMTAAPGSNDYGRLSVMLQYFFEMEPLINVPPEAFSP 183 Query: 198 SPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S V+ IP + I ++ ++ + AF +RRKT+R +LK L + L AGI Sbjct: 184 APKVDSAVVRMIPLKHRIGRADDFDAFARLVKAAFHQRRKTIRNNLKELAADGDLQAAGI 243 Query: 256 ETNLRAENLSIEDFCRITNIL 276 R E+++ E + ++N L Sbjct: 244 NPQDRPEHIAPEKYVGLSNYL 264 >gi|303327382|ref|ZP_07357823.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3] gi|302862322|gb|EFL85255.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3] Length = 274 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 136/265 (51%), Gaps = 13/265 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL I +IA V+EIG GPG LT+ L ++++EKD+ Sbjct: 15 KKSLGQHFLRREEICDRIAALLLPQAEDRVLEIGPGPGALTRALEAAPHACLLLLEKDRH 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + + Q R + + DAL+ D+ + + P ++I NLPYN+ + L+++ +S Sbjct: 75 W---AAERQRQAAPRTQAVLTDALRFDWRRI-SPEHPWKVIGNLPYNVASPLIWDIVSRA 130 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEVG+R+ A + HYG LSV + + F + P F P PKV Sbjct: 131 E---GLKRAVFMVQKEVGQRLAAAPGNGHYGALSVWVQSYARPRLEFVVGPGAFSPPPKV 187 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAGIE 256 S V+ F P L P P ++L ++ + F +RRK L +R G E L QAG+ Sbjct: 188 DSAVLSFEP-LPPEAQPAHPKALARLLRICFQQRRKQLGGIFRRAGLPQMERALDQAGLA 246 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 +LR E LS +DF R+++ L N D Sbjct: 247 PSLRPEALSTDDFQRLSSFLALNLD 271 >gi|319953425|ref|YP_004164692.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237] gi|319422085|gb|ADV49194.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237] Length = 289 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 91/266 (34%), Positives = 135/266 (50%), Gaps = 14/266 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D +I K+IAE+ IEIG G G LT+ +L ++ ++ D + Sbjct: 28 KKHLGQHFLKDEDIAKQIAETLTFKGYENAIEIGPGTGVLTKYILEQDIN-LVAMDLDSE 86 Query: 82 FFPILKD-ISSQHPN------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 L D +HP ++I+ D LK D F I N PYNI T+++ Sbjct: 87 SIVYLNDSFLLEHPKFIGRKKEFKVIEADFLKYDVSTLFG-DEQFAITGNFPYNISTQIV 145 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + P + +FQKEV +RI ++ S YG LSVL A +F + P V Sbjct: 146 FKLLEIRNLVP---EFSGMFQKEVAQRICEKEGSKTYGILSVLVQAFFDAEYLFTVPPTV 202 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S V+ N + C +SL ++ + AFG+RRKT+R SLK + L + Sbjct: 203 FNPPPKVESGVLRLTRKENQTLDCNEKSLYRVVKAAFGQRRKTIRNSLKTFNLSDSLRED 262 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I + R E LS+ DF +TN + ++ Sbjct: 263 TI-FDKRPEQLSVTDFISLTNKIDND 287 >gi|295105199|emb|CBL02743.1| dimethyladenosine transferase [Faecalibacterium prausnitzii SL3/3] Length = 283 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 141/284 (49%), Gaps = 28/284 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + Y K GQNF+++ I KI ++SG VIEIG G G LT+ L Sbjct: 10 IRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGVLTKELAKRA 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124 A KV+ IE D++ P+L + + N +++ D LKVD E+F + P+ + AN Sbjct: 70 A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM--PVAVCAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I + ++ + D P ESLT++ QKE +R+ A + +S + + Sbjct: 126 LPYYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAVPGTRASSAISCAVNYYATS 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQS 240 +MF +P F+P+PKVTS V+ + P P + + AFG+RRKT + Sbjct: 183 KLMFTAAPGSFYPAPKVTSAVVRM--DIRPTPAVQVEDEAGYFALVRAAFGQRRKTAANA 240 Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 + GG NL + AG + +R E L++EDF +I L Sbjct: 241 IA--GGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 282 >gi|241765842|ref|ZP_04763779.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN] gi|241364241|gb|EER59413.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN] Length = 256 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 131/261 (50%), Gaps = 18/261 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ LG VI + Sbjct: 2 KHIPRKRFGQHFLSDGGIIDAIVSAIAPQPGQPMVEIGPGLAALTQPLVERLGRLTVIEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTRL 133 ++D L +LE+I+ D LKVDF + +++ +R++ NLPYNI T + Sbjct: 62 DRDLALRLRLH-------GQLEVIESDVLKVDFTQLARDMHVAR-LRVVGNLPYNISTPI 113 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + E + QKEV +R+ A + YGRLSV+ WR + + P Sbjct: 114 LFHLLDHVQ---VIEDQHFMLQKEVIDRMVAAPATADYGRLSVMLQWRYAMENVLFVPPE 170 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQ 252 F P P+V S V+ +P P+ L ++ Q AF +RRK LR +L R L G Sbjct: 171 SFDPPPRVDSAVVRMVPWAEPVAVPPALLSELVQVAFSQRRKLLRHTLGRWLEGRGF--G 228 Query: 253 AGIETNLRAENLSIEDFCRIT 273 +T RAE + ++++ + Sbjct: 229 GTFDTQRRAEEVPVQEYVALA 249 >gi|332019925|gb|EGI60385.1| Dimethyladenosine transferase 1, mitochondrial [Acromyrmex echinatior] Length = 351 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 142/291 (48%), Gaps = 26/291 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ IL Y + K + QNFLLD N+ KKI +G++ G V+E+G GPG LT+ +L Sbjct: 11 TIRDILKLYNLSAIKRLSQNFLLDENLTKKIVAKAGNISGGQVLEVGPGPGGLTRSILKK 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------NISS 117 +++V+EKD++F P L+ ++ +++II DD LK + E F N Sbjct: 71 TPERLVVVEKDKRFKPTLEMLADSFGAINGKMDIIYDDILKTNIESLFPLEKKRNWNDKP 130 Query: 118 P-IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 P I +I NLP+++ T L+ W+ A W +TL FQKEV ER+ A Sbjct: 131 PDIFVIGNLPFSLSTHLIIQWLHAISEQRGPWAFGRTKMTLTFQKEVAERLVAPPMGDQR 190 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ T + F I F P P V V+ F P + P + + IT+ F Sbjct: 191 CRLSVMAQTWTFPVLRFIIPGEAFVPKPDVDVGVVSFTPLVKPRTQYDFKFFEMITRHIF 250 Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRIT 273 R+K + ++ L G + A +E L+ L+IED ++ Sbjct: 251 NFRQKYSIRCIETLFPKEHRKDLGLMMYKLADLEPTLKPTQLTIEDINKLA 301 >gi|258513475|ref|YP_003189697.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM 771] gi|257777180|gb|ACV61074.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM 771] Length = 305 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 146/274 (53%), Gaps = 27/274 (9%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL+D NI+ KI ++ V+EIG G G LTQ + +R V+ IE D++ Sbjct: 23 KKLGQNFLIDSNIISKIISAADLRSEDLVVEIGPGLGVLTQSIADEVSR-VLSIEIDRKL 81 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRLLFNW 137 PIL +++ + + ++I DALK DF++ S ++IANLPY I T LL + Sbjct: 82 QPIL-EVNLKEYSNTKVIFQDALKTDFDRLVYAEAGGKSRSYKVIANLPYYITTPLLMHI 140 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + E + ++ Q+EV ER+TA YG LSV + T+ ++ + VF P Sbjct: 141 LESKFN---VELIVIMVQREVAERMTAPPGKKDYGALSVAVQYYTEPEIICRVPKTVFIP 197 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGEN------ 248 +P+V STVI I P P L+S K + + AF +RRKT+ L + G N Sbjct: 198 APEVDSTVIRLIKRKLP-PVQLKSEKLFFNLVRTAFNQRRKTV---LNAMQGSNWGLMKE 253 Query: 249 ----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L +AGI+ R E S++DF ++N + + Sbjct: 254 EWKIILEKAGIDPMRRGETFSLQDFAMLSNCVYE 287 >gi|296314706|ref|ZP_06864647.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768] gi|296838541|gb|EFH22479.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768] Length = 259 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 132/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVHPQADDIVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF +I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|284048769|ref|YP_003399108.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM 20731] gi|283952990|gb|ADB47793.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM 20731] Length = 284 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + + KK GQNFL++ +++ IA + G V+EIG G G LTQ L GA Sbjct: 13 RYILDTFGLRAKKKFGQNFLINEQVVRGIAREAQVGPGDLVLEIGPGIGTLTQALAETGA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +V +E D+ P+L + N +EI+ D LKVD P + ANLPY I Sbjct: 73 -QVKSVEIDRTLLPVLAKTLEGYDN-VEIVPGDVLKVDLGAVTK-HRPFTVAANLPYYIT 129 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++F + D + L ++ QKEV ER+ A YG LS+ + ++ + + Sbjct: 130 TPIIFALLEEDLP---LQRLVVMVQKEVAERMIASPGGKDYGPLSLALQYYSRPRLAIPV 186 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG---- 245 F P+P+V S V+ +P + + ++ + AF +RRK L LK LG Sbjct: 187 PARDFMPAPRVDSMVVVCEKREHPAVDVPAKVFFRVVKAAFSQRRKMLSNCLKNLGLSGD 246 Query: 246 -GENLLHQAGIETNLRAENLSIEDF 269 + LL +AGI+ R E+L++E+F Sbjct: 247 QVQQLLAEAGIDGKRRGESLTMEEF 271 >gi|300814328|ref|ZP_07094600.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511595|gb|EFK38823.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 288 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 28/280 (10%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + IL Y K +GQNFL+D NI++KI +S+ + V+EIG G G LT+ Sbjct: 6 KPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEE- 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFN---ISSPIR 120 L L A+KV+ IE D++ LKD+ + + ++II D LK+D + + + Sbjct: 65 LALRAKKVVSIEIDKR----LKDLLEETLPYDNVKIIYKDFLKLDLKTLIDEEFKGQNFK 120 Query: 121 IIANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++ANLPY I T +LL N + E + ++ QKEV +R TAQ + YG LSV Sbjct: 121 VVANLPYYITTPIIEKLLLNSEN-------IEIINVMIQKEVAKRFTAQPQTKDYGSLSV 173 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 + KA F + VF P P V S V + E KI + AF KRRKT Sbjct: 174 FIQFFCKAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKT 233 Query: 237 LRQSLK-------RLGGENLLHQAGIETNLRAENLSIEDF 269 L SL + +L +GI+T RAE+L++EDF Sbjct: 234 LVNSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDF 273 >gi|260767123|ref|ZP_05876068.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972] gi|260617878|gb|EEX43052.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972] gi|315181266|gb|ADT88180.1| dimethyladenosine transferase [Vibrio furnissii NCTC 11218] Length = 271 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 13/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPQPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF + ++ +RI NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+ A S YGRL+V+T + K + ++ P F P Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMTQYYCKVVPVLEVPPTAFVPP 183 Query: 199 PKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P+ + P P L+ L ++ +E F +RRKT+R K L +L + G+ Sbjct: 184 PKVDSAVVRLVPYEDLPHPTTSLKWLDRVVREGFNQRRKTVRNCYKGLLELEVLEELGVN 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 +R ENL+++ F + N L N Sbjct: 244 PGMRPENLTLQQFVAMANWLDANH 267 >gi|223983387|ref|ZP_03633573.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM 12042] gi|223964559|gb|EEF68885.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM 12042] Length = 291 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/281 (30%), Positives = 145/281 (51%), Gaps = 17/281 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL+ Y + KK GQNF+++ I++KIA S + + VIEIG G G LT+ L + A + Sbjct: 14 ILAKYDLYAKKNFGQNFIIEPGIVEKIARLSHADEHSAVIEIGPGIGALTEQLARV-AGQ 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128 V+ E D + +L D S +P+ +E++ D L+ D EK + + + ANLPY Sbjct: 73 VLAFEIDDRLIEVLADTLSDYPH-VEVVHQDFLEADLNATVEKLKTQWNQVLVCANLPYY 131 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +LF + P +T++ QKEV +R TA ++ Y LSV+ ++ + + Sbjct: 132 ITTPILFKIFESKADIPV---ITVMMQKEVADRFTAAVSTKDYNALSVIVQYQYQVQTVM 188 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL-- 244 I +F P P V S V+ F P+ + + + + F +RRKTL + + Sbjct: 189 KIPKTIFNPRPAVDSAVVQFTRR-QPVRTARDEAQFFALVKGCFKQRRKTLYNNFREYLQ 247 Query: 245 ---GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 LL++AG+E +LRAE ++++ F + + + + + Sbjct: 248 DKDEATRLLNEAGLEPSLRAETMTLDQFLDLYEVTYETKSL 288 >gi|281412793|ref|YP_003346872.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10] gi|281373896|gb|ADA67458.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10] Length = 260 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 136/259 (52%), Gaps = 18/259 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + KK++GQ FL D I K+I +++ V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ PIL++ S++PN +E+ +D LK ++ ++N+PY+I L Sbjct: 66 IAYEIDESLAPILRERLSKYPN-VELRFEDFLKAK-----DVPEGAICVSNIPYSITGLL 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I W ++ ++ QKEVGERI A+ YG LSV+ + +FD+S Sbjct: 120 MEKIIE---WK--FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V STV+ P+ E KK F K+RKTL+ +LK L Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPF----LSIFE 228 Query: 254 GIETNLRAENLSIEDFCRI 272 G++ + RAE L++E+ + Sbjct: 229 GVDLSRRAEQLTVEEIVEL 247 >gi|224025715|ref|ZP_03644081.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM 18228] gi|224018951|gb|EEF76949.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM 18228] Length = 265 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 8/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA + + + ++E+G G G LTQ L+T R + V+E Sbjct: 4 VKPKKFLGQHFLKDLQVAQDIANTVDACPELPILEVGPGMGVLTQFLMT-KERPLKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ N II+ D LK+D + F P + N PYNI +++ F + Sbjct: 63 DFESVAYLRENFPALGNN--IIEQDFLKMDLAQLFE-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ER+ A S YG LSVL + +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERMAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K+I + F +RRKTLR S+ + + A Sbjct: 177 PKVKSAVIRMTRNETQELGCNEKLFKQIVKTTFNQRRKTLRNSISPILDKTNPLMADPIF 236 Query: 258 NLRAENLSIEDFCRITN 274 N R E LS+++F +TN Sbjct: 237 NKRPEQLSVQEFIDLTN 253 >gi|160943226|ref|ZP_02090462.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii M21/2] gi|158445465|gb|EDP22468.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii M21/2] Length = 311 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 141/284 (49%), Gaps = 28/284 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + Y K GQNF+++ I KI ++SG VIEIG G G LT+ L Sbjct: 38 IRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGVLTKELAKRA 97 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124 A KV+ IE D++ P+L + + N +++ D LKVD E+F + P+ + AN Sbjct: 98 A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM--PVAVCAN 153 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I + ++ + D P ESLT++ QKE +R+ A + +S + + Sbjct: 154 LPYYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAVPGTRASSAISCAVNYYATS 210 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQS 240 +MF +P F+P+PKVTS V+ + P P + + AFG+RRKT + Sbjct: 211 KLMFTAAPGSFYPAPKVTSAVVRM--DIRPTPAVQVEDEAGYFALVRAAFGQRRKTAANA 268 Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 + GG NL + AG + +R E L++EDF +I L Sbjct: 269 IA--GGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 310 >gi|195326894|ref|XP_002030159.1| GM25292 [Drosophila sechellia] gi|194119102|gb|EDW41145.1| GM25292 [Drosophila sechellia] Length = 414 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 151/292 (51%), Gaps = 23/292 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 +++ ++ Y++ +K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 104 TIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPKDLVLEVGPGPGGITRSILR 163 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 ++++++EKD +F +LK+ +S + +I DD L+ + E+ + S I +I Sbjct: 164 RHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHLIG 223 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP+ I TRLL NW+ A F +TL FQ+EV ERI A RLSV++ Sbjct: 224 NLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMS 283 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ M F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 284 QVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHL--VERVVRHIFSMRQK 341 Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L + L +A ++ LR L++E R+ + +++ Sbjct: 342 YCRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 393 >gi|228471196|ref|ZP_04056009.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3] gi|228307011|gb|EEK16093.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3] Length = 271 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 128/257 (49%), Gaps = 11/257 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KKY+GQ+FL DL ++IA+S G ++E+G G G LTQ LL G + VI+ D + Sbjct: 7 KKYLGQHFLTDLGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDIDHE 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLFNWIS 139 L Q II+ D LK+ E+ +P +I N PYNI +++ F + Sbjct: 66 SIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADTPFVVIGNYPYNISSQIFFRILE 125 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P ++ + Q EV +R+ A YG LSVL +F +S F P P Sbjct: 126 LRERIP---AVAGMLQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFNPPP 182 Query: 200 KVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 KV V+ I N +PC + K++ + AFG+RRK LR +L+ L G+ + Sbjct: 183 KVDGGVM--IARRNGRTSLPCDETNFKRVVKTAFGQRRKMLRNALQSLFGKEFPYADHDI 240 Query: 257 TNLRAENLSIEDFCRIT 273 LRAE LS+EDF +T Sbjct: 241 FTLRAERLSVEDFIGLT 257 >gi|261363715|ref|ZP_05976598.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996] gi|288568281|gb|EFC89841.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996] Length = 259 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 133/262 (50%), Gaps = 19/262 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL D I+ I + VIEIG G +T+ L L + VI I++D Sbjct: 7 RKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNSLHVIEIDRD- 65 Query: 81 QFFPILKDISS-QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-- 137 I++ + + ++L I + D L+ DF I+ +I+ NLPYNI T LLF Sbjct: 66 ----IVRRLKTLPFADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAE 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P Sbjct: 119 VADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDP 173 Query: 198 SPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G+ L GI Sbjct: 174 APKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGI 233 Query: 256 ETNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 234 SPQDRAEHIAPEKYVELSNYLV 255 >gi|218767820|ref|YP_002342332.1| dimethyladenosine transferase [Neisseria meningitidis Z2491] gi|254804581|ref|YP_003082802.1| dimethyladenosine transferase [Neisseria meningitidis alpha14] gi|27151604|sp|Q9JVC2|RSMA_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121051828|emb|CAM08134.1| putative dimethyladenosine transferase [Neisseria meningitidis Z2491] gi|254668123|emb|CBA04707.1| dimethyladenosine transferase [Neisseria meningitidis alpha14] gi|319410070|emb|CBY90404.1| dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA dimethylase; high level kasugamycin resistance protein KsgA; kasugamycin dimethyltransferase) [Neisseria meningitidis WUE 2594] Length = 259 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV +R+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|238752274|ref|ZP_04613754.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380] gi|238709542|gb|EEQ01780.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380] Length = 222 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 15/210 (7%) Query: 75 VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIG 130 VIE D+ L + HP ++L I Q+DA+K++F + P+R+ NLPYNI Sbjct: 14 VIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAEQAGQPLRVFGNLPYNIS 69 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T L+F+ + + + QKEV R+ A NS YGRL+V+ + + ++ Sbjct: 70 TPLMFHLFG---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEV 126 Query: 191 SPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 P F P+PKV S V+ IPH+ NP+ + L +IT +AF +RRKT+R SL L Sbjct: 127 PPTAFTPAPKVDSAVVRLIPHVQMPNPV-GDVRMLSRITTQAFNQRRKTVRNSLGDLFTA 185 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 186 EQLIELGIDPILRAENISVAQYCKLANWLS 215 >gi|188996789|ref|YP_001931040.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1] gi|254807892|sp|B2V963|RSMA_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|188931856|gb|ACD66486.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 258 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI PKK +GQ+FL+ N+++KI + ++EIG G G LT+ +L + + IE Sbjct: 3 KIKPKKRLGQHFLISKNVIEKIVDEINISKEDIIVEIGPGTGALTEEILLRNPKILYAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D P+L++ S + N ++I+ D V+ + + I+++ NLPYN+ + ++ Sbjct: 63 IDTSVHPVLEEKFSIYSN-FKLIKSDFFDVNLYELISDEEKIKLVGNLPYNVASLMI--- 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I E + QKEV E++ A+ + Y LSV + + F P Sbjct: 119 IDCAFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDIKYVMSVPARFFNP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS V+ P N ++ K F RRK ++ ++ E +L++AGI Sbjct: 179 PPKVTSAVVKLTPKQNIAINNVKKYKNFISHLFQNRRKMIKSKIE----EEMLNKAGISP 234 Query: 258 NLRAENLSIEDFCRITNILTDN 279 NLRAE LS+EDF RI ++ ++ Sbjct: 235 NLRAEELSVEDFIRIFGVVEND 256 >gi|222152162|ref|YP_002561322.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402] gi|254807873|sp|B9E8V8|RSMA_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|222121291|dbj|BAH18626.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402] Length = 296 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 147/279 (52%), Gaps = 20/279 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L Y KK +GQNFL+D N+++ I E++G VIEIG G G+LT+ L A Sbjct: 13 KQLLDQYGFKFKKSLGQNFLVDTNVIRNIIEAAGIDKTSGVIEIGPGMGSLTEQLAK-HA 71 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126 ++V+ E DQ+ PIL + S + N + +I +D LK D E + + I ++ANLP Sbjct: 72 KQVLAFEIDQRLIPILGETLSPYDN-VTVINEDILKADVASAIETYLHHCDEIFVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + + S ++ QKEVGER++A ++ YG LS+ + T Sbjct: 131 YYITTPILMGLLEKNLN---INSYVVMMQKEVGERLSAIPSTKAYGSLSIAVQYYTDVKR 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRL 244 + + VF P P V S V+ P + E+L K+T+ AF +RRKT+ + L Sbjct: 188 IMVVPKGVFMPPPNVDSLVVKLTTLERPRVDVEDENLFFKLTRGAFVQRRKTILNNYMSL 247 Query: 245 GGENLLHQ---------AGIETNLRAENLSIEDFCRITN 274 ++ H+ +G+ + R E+L++ D+ +++N Sbjct: 248 IQDSKEHKSRIIEWLEASGVAPSRRGESLNLNDYAQLSN 286 >gi|219685175|ref|ZP_03539995.1| dimethyladenosine transferase [Borrelia garinii Far04] gi|219673271|gb|EED30290.1| dimethyladenosine transferase [Borrelia garinii Far04] Length = 281 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 150/287 (52%), Gaps = 24/287 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K IL KI P+K GQN+L++ NI +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQILKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T +LL + E D ++ IL + + N ++I+ D LK K+ N + Sbjct: 66 LGAMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENK 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L A + DI F+P+PKV ST + IP N I E K+ + F RRK Sbjct: 176 LVQSHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSSRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L+ ++ K + EN L + R EN+S+E+F +I+N LT Sbjct: 235 LKNTIINFIKNKAILEENFLKEY---LGKRPENISVEEFIQISNTLT 278 >gi|114778951|ref|ZP_01453742.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1] gi|114550823|gb|EAU53391.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1] Length = 265 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 124/259 (47%), Gaps = 11/259 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL+D +++IA G++D G +IEIG GPG +T++LL A + VIE D Sbjct: 17 KKALGQHFLMDQQAIRRIA---GAIDDGADIIEIGPGPGAITEVLLAR-ASHLTVIEMDD 72 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +F + + HP L ++ D +KV E P I NLPYN+ L Sbjct: 73 RFAARWQQHARSHPT-LSVVHGDVMKV-LEATVADKQPQWIAGNLPYNLSGPLTATLAGI 130 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L++Q+EV ERI A S YG LSVL + + P F P PK Sbjct: 131 ----PLSGGMVLMYQREVAERICAGPGSKTYGGLSVLVRHFYDVKRLLTLPPGAFSPPPK 186 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S V+ PH PC L++ ++ F RRKT+ + + + + I LR Sbjct: 187 VHSAVVVLTPHHRTPPCDYSILQQTVRKGFAHRRKTIFNNFRGVLDADAFTAIDINPGLR 246 Query: 261 AENLSIEDFCRITNILTDN 279 E L + R+ L +N Sbjct: 247 PEQLDYAAWARLALRLQNN 265 >gi|167629323|ref|YP_001679822.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1] gi|167592063|gb|ABZ83811.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1] Length = 285 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 30/290 (10%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + L+ LS Y I KK +GQNFL D + +I ++ G V+EIG GP LT+ L Sbjct: 2 AGELRQNLSRYGIRAKKGLGQNFLSDPVYVGRIIAAAELAAGDVVVEIGPGPATLTRDLA 61 Query: 67 -TLG-ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRI 121 +G KVI +E D++ P+L D+ +P +EI+ DAL+VD++ + P + Sbjct: 62 EAVGPGGKVIAVEVDERLRPLLDDLCRDYPQ-VEILWQDALQVDYDAATQPWRGDKPFVL 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWES-LTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +ANLPY I T +L + F S L ++ QKEV +R+ A YG LSV+ + Sbjct: 121 VANLPYYITTPILMRLLEGR----FSVSRLVVMVQKEVADRMLAPAGHSDYGALSVVIQY 176 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKT-- 236 +++ + P F P PKV+S V+ P ++ ++ + AF +RRKT Sbjct: 177 YCAPSLVTKVPPGAFIPPPKVSSAVVRLDRRATPPVAVVDEAAFFRVVRAAFNQRRKTLL 236 Query: 237 ----------LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++ + R L AG++ R E L++++F + + L Sbjct: 237 NALGALGLALNKEEMAR-----RLTAAGVDPGRRGETLNLQEFANVADAL 281 >gi|71901524|ref|ZP_00683609.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] gi|71728711|gb|EAO30857.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] Length = 297 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +SH +++ L + KK GQ+FL+D + +I ++EIG G G +T L Sbjct: 29 ESHGMESRL--FNTPAKKAFGQHFLVDRYYIDRIIHVINPQPNDHIVEIGPGQGAITLPL 86 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124 L + IE D+ L ++ +L+II D LKVD + +R++ N Sbjct: 87 LKCCG-SLTAIELDRDLIAPLTAAATPI-GKLDIIHSDVLKVDLSILAKQGNKKLRLVGN 144 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI + +LF+ + + + QKEV +R+ A S YGRLSV+ + Sbjct: 145 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 201 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 T MF + P F P PKV S + +P +P + K+ I + AFG+RRKTLR SL Sbjct: 202 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 260 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + AGI TN RAE L + +F + N Sbjct: 261 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 293 >gi|139438654|ref|ZP_01772138.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC 25986] gi|133775734|gb|EBA39554.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC 25986] Length = 286 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 14/277 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + + +L + + K +GQNFL+D +++++I E + V+E+G G G LT LL Sbjct: 11 ATRELLEEFGLATKHRLGQNFLIDNHVIERICELAELAGDERVLEVGPGCGTLTLALLQE 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLP 126 A V IE D + P+L ++ + N I DALKV E+ + P +ANLP Sbjct: 71 AA-CVTSIEADPELEPVLDAHAADYAN-FRFIMGDALKVGPEQIEQAAGGEPTVFVANLP 128 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YN+ ++ + T P ++ ++ QKEV +RI A + YG + G + T Sbjct: 129 YNVAATIILQFFQ--TMPALKRAVVMV-QKEVADRIAAVPGNKTYGGYTAKLGLYAQVTG 185 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244 F++ P F P+P V S V+ +P L E + ++ AF +RRKT+R S+ Sbjct: 186 RFEVPPRCFMPAPHVDSAVVRIDRVDGVVPEGLDREFVARVIDAAFAQRRKTIRNSMSAN 245 Query: 245 G-GENLLHQA----GIETNLRAENLSIEDFCRITNIL 276 G +++L A GI RAE L + DF R+ L Sbjct: 246 GFAKDVLDAAIETCGIAPTTRAETLDVADFVRLAQEL 282 >gi|218258231|ref|ZP_03474633.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii DSM 18315] gi|218225574|gb|EEC98224.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii DSM 18315] Length = 290 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 134/267 (50%), Gaps = 23/267 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 PKK +GQ+FL DL I ++IA++ + V+EIG G G LTQ LL G + V+E D Sbjct: 35 PKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVELDM 93 Query: 80 ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +Q FP L+ +I+ +D L++D K F +I N PYNI +++ Sbjct: 94 ESVDYLEQNFPALEG---------KILAEDFLRLDLSKLF--PDQFCVIGNYPYNISSQI 142 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P + + QKEV ER+ A S YG LSVL + +F +S Sbjct: 143 FFKVLDYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSEK 199 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S VI + + C E L K + + +F +RRKTLR S+K L G++ Sbjct: 200 VFDPPPKVKSAVIRMVRNNRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDY 259 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 + R E LS+E F +T I N Sbjct: 260 PLPIFDKRPEQLSVEQFVELTLITERN 286 >gi|325267670|ref|ZP_08134321.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394] gi|324980794|gb|EGC16455.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394] Length = 259 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 133/259 (51%), Gaps = 13/259 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L T R++ V E D+ Sbjct: 8 RKRFGQNFLQDTRIITDIVNAVRPQPDDIVIEIGPGLAAITEPL-TRHLRQLHVCEIDRD 66 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK+ ++L I + D L+ DF +I+ +I+ NLPYNI T LLF+ A Sbjct: 67 IIRFLKE--QPFADKLVIHEGDVLQFDFG---SIAGRKKIVGNLPYNISTPLLFHLAEVA 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ AQ + YGRLSV+ + M+ ++ P F P+PK Sbjct: 122 DEV----VDMHFMLQKEVVERMVAQPKTNDYGRLSVMLQYFFDMEMLIEVPPESFDPAPK 177 Query: 201 VTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ IP N I + + ++AF +RRKT+R +LK + + L GI Sbjct: 178 VDSAVVRMIPVPNRIGTAADFAHFSNLVRDAFHQRRKTIRNNLKGIADDEDLQAVGILPQ 237 Query: 259 LRAENLSIEDFCRITNILT 277 RAE ++ E + R++N L Sbjct: 238 QRAEEIAPELYVRLSNHLV 256 >gi|257438823|ref|ZP_05614578.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165] gi|257198732|gb|EEU97016.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165] Length = 320 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 20/281 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + Y K GQNF+++ + KI ++SG V+EIG G G LT+ L Sbjct: 46 VRALCEKYDFALSKGFGQNFIVNPGLPPKIVDASGVDKRYGVLEIGPGIGVLTRELAKRA 105 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126 A KV+ IE D++ P+L + + N +++ D LKVD + P+ + ANLP Sbjct: 106 A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAQEFPGMPVAVCANLP 163 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + ++ + D P ESLT++ QKE +R+ A + +S + + M Sbjct: 164 YYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAAPGTRASSAISCAVSYYATSKM 220 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLK 242 MF +P F+P+PKVTS V+ + P P E + + AFG+RRKT ++ Sbjct: 221 MFTAAPGSFYPAPKVTSAVVRM--EIRPTPAVQVEDEEGYFALVRAAFGQRRKTAANAIA 278 Query: 243 RLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + AG + +R E L++EDF +I + L Sbjct: 279 SGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQSALA 319 >gi|194097992|ref|YP_002001040.1| dimethyladenosine transferase [Neisseria gonorrhoeae NCCP11945] gi|239998459|ref|ZP_04718383.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02] gi|240013584|ref|ZP_04720497.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI18] gi|240080164|ref|ZP_04724707.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19] gi|240115118|ref|ZP_04729180.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID18] gi|240117401|ref|ZP_04731463.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID1] gi|240120653|ref|ZP_04733615.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID24-1] gi|240122958|ref|ZP_04735914.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID332] gi|240125209|ref|ZP_04738095.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-92-679] gi|240127664|ref|ZP_04740325.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-93-1035] gi|260441065|ref|ZP_05794881.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2] gi|268594320|ref|ZP_06128487.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02] gi|268596315|ref|ZP_06130482.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19] gi|268600793|ref|ZP_06134960.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID18] gi|268603098|ref|ZP_06137265.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID1] gi|268681579|ref|ZP_06148441.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID332] gi|268683807|ref|ZP_06150669.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268686049|ref|ZP_06152911.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291044398|ref|ZP_06570107.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2] gi|226732603|sp|B4RJV5|RSMA_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|193933282|gb|ACF29106.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae NCCP11945] gi|212278025|gb|ACJ23027.1| KsgA [Neisseria gonorrhoeae] gi|212278027|gb|ACJ23028.1| KsgA [Neisseria gonorrhoeae] gi|212278029|gb|ACJ23029.1| KsgA [Neisseria gonorrhoeae] gi|212278031|gb|ACJ23030.1| KsgA [Neisseria gonorrhoeae] gi|212278033|gb|ACJ23031.1| KsgA [Neisseria gonorrhoeae] gi|212278035|gb|ACJ23032.1| KsgA [Neisseria gonorrhoeae] gi|212278039|gb|ACJ23034.1| KsgA [Neisseria gonorrhoeae] gi|212278041|gb|ACJ23035.1| KsgA [Neisseria gonorrhoeae] gi|212278043|gb|ACJ23036.1| KsgA [Neisseria gonorrhoeae] gi|212278045|gb|ACJ23037.1| KsgA [Neisseria gonorrhoeae] gi|212278047|gb|ACJ23038.1| KsgA [Neisseria gonorrhoeae] gi|212278049|gb|ACJ23039.1| KsgA [Neisseria gonorrhoeae] gi|212278051|gb|ACJ23040.1| KsgA [Neisseria gonorrhoeae] gi|212278053|gb|ACJ23041.1| KsgA [Neisseria gonorrhoeae] gi|212278055|gb|ACJ23042.1| KsgA [Neisseria gonorrhoeae] gi|212278057|gb|ACJ23043.1| KsgA [Neisseria gonorrhoeae] gi|212278059|gb|ACJ23044.1| KsgA [Neisseria gonorrhoeae] gi|212278061|gb|ACJ23045.1| KsgA [Neisseria gonorrhoeae] gi|212278063|gb|ACJ23046.1| KsgA [Neisseria gonorrhoeae] gi|212278065|gb|ACJ23047.1| KsgA [Neisseria gonorrhoeae] gi|212278067|gb|ACJ23048.1| KsgA [Neisseria gonorrhoeae] gi|268547709|gb|EEZ43127.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02] gi|268550103|gb|EEZ45122.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19] gi|268584924|gb|EEZ49600.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID18] gi|268587229|gb|EEZ51905.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID1] gi|268621863|gb|EEZ54263.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID332] gi|268624091|gb|EEZ56491.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268626333|gb|EEZ58733.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291011292|gb|EFE03288.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2] gi|317163741|gb|ADV07282.1| dimethyladenosine transferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 259 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 130/260 (50%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|332877785|ref|ZP_08445524.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684250|gb|EGJ57108.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 277 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 131/257 (50%), Gaps = 12/257 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL I + IA++ + GI V+E+G G G +TQ L+ R + V+E Sbjct: 4 VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLVR-KDRPLKVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D F + + + +P E II+DD LK+ E+ F P + N PYNI +++ F Sbjct: 63 D---FESVAYLRTHYPQLEENIIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKM 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P T + QKEV ERI A S YG LSVL +F + HVF P Sbjct: 119 LDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLLQAWYSVEYLFTVHEHVFNP 175 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254 PKV S VI + C E L K++ + F +RRK LR S++ + ++ + Q G Sbjct: 176 PPKVKSAVIRMTRNATTDLGCDERLFKQVVKTTFNQRRKVLRNSIRPVLADADHKVQQEG 235 Query: 255 IETNLRAENLSIEDFCR 271 E LS E F R Sbjct: 236 RLPKDHTEFLSAEIFGR 252 >gi|195128817|ref|XP_002008857.1| GI13722 [Drosophila mojavensis] gi|193920466|gb|EDW19333.1| GI13722 [Drosophila mojavensis] Length = 413 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 151/292 (51%), Gaps = 23/292 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLT 67 S++ ++ YK+ K + QNFL+D + KI +S+G +D V+E+G GPG +T+ +L Sbjct: 104 SIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHNDIVLEVGPGPGGITRSILR 163 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 ++++++EKD +F +L++ + +EI +D L+ + E+ + + + +I Sbjct: 164 RQPQRLLLVEKDARFTETLQLLRECARPLDMEVEIYHEDILRFNIEQHVPDTTQRLHLIG 223 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP+ I TRLL NW + F + +TL FQKEV ERI AQ S RLSV++ Sbjct: 224 NLPFAISTRLLINWFDDLSRRRGAFRRNDTCMTLTFQKEVAERICAQVGSEQRCRLSVMS 283 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ + F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 284 QIWTEPVLKFIIPGKAFVPKPQVDVGVVKVIPLKRPKTELPFPL--VERVVRHIFSMRQK 341 Query: 236 TLRQSLKRL----GGEN----LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L G E L +A ++ +R LS+ + R+ + D+ Sbjct: 342 YCRRGYSTLLPPEGREETTQALFQRADVKDTMRPFELSVAECLRLADAYADH 393 >gi|262341205|ref|YP_003284060.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272542|gb|ACY40450.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 259 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 134/257 (52%), Gaps = 8/257 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 +K I +K Q FL D NI KKI ++ L+ TV+EIG G G LTQ LL +V +I Sbjct: 4 HKSIFRKKFDQYFLKDKNIAKKIVKNLSFLNYDTVVEIGPGLGILTQYLLKHHQNQVFLI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D++ L++ S NR II D LK E+ II N PY+I +++LF+ Sbjct: 64 EIDRELISFLRNKFSISKNR--IIHKDFLKWSPEEIH--LQNFAIIGNFPYSISSQILFH 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + P +FQKEV +RI + + +YG LSVL + +F ++P VFF Sbjct: 120 ILKYNQYIP---ECIGMFQKEVAKRIASHEGKKNYGILSVLVQTFYEVKYLFTVNPQVFF 176 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P V S V+ + C + L K + AF +RRK L+ SL+ ++ Sbjct: 177 PIPNVKSAVLSLRKKNEILSCNKDLLFKCVKTAFNQRRKKLKNSLQLFNHIPNFYKIPF- 235 Query: 257 TNLRAENLSIEDFCRIT 273 N RAE LS+++F ++T Sbjct: 236 LNKRAEELSVQEFLQLT 252 >gi|323701639|ref|ZP_08113311.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM 574] gi|323533412|gb|EGB23279.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM 574] Length = 296 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 26/285 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ + +K +GQNFL+D NI+ KI ++ + EIG G G LT+ L Sbjct: 9 TVREIIKAHGFKVRKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGVLTRRLAQE 68 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPI 119 R V+ +E DQ PIL + + P + E+IQ DA KVDF++ F Sbjct: 69 AGR-VLAVEIDQNLLPILNETLADLP-KAEVIQADARKVDFDQLAAERTQGQFGPGGKAY 126 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T LL + +++ E L ++ QKEV +R+ A YG LSV+ Sbjct: 127 KLVANLPYYITTPLLLHLLTSGF---NLELLVVMIQKEVADRLQASPGGKDYGSLSVVVQ 183 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRK 235 + T ++ + VF+P P V S VI P+P E+ K+ + AFG+RRK Sbjct: 184 YYTVPEIVCKVPKTVFYPVPDVDSAVIRLTRR--PVPPVQLRNEETFFKVVRAAFGQRRK 241 Query: 236 TLRQSLKRLGGE------NLLHQAGIETNLRAENLSIEDFCRITN 274 TL +L G ++L++ G++ R E LS+E+F + N Sbjct: 242 TLINALTGSGLASKETWLSVLNETGLDPARRGETLSLEEFAALAN 286 >gi|289209141|ref|YP_003461207.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix] gi|288944772|gb|ADC72471.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix] Length = 263 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 126/262 (48%), Gaps = 15/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +L +I + V+EIG G G LT LL +++ +E D+ Sbjct: 9 RKRFGQNFLHDQAVLARIVGAIAPRPDDPVLEIGPGRGALTGALLER-LNRLVAVEIDRD 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLFNW 137 L+ ++ P RLE+ DAL +D ++ P R++ NLPYNI T LLF+ Sbjct: 68 LVAGLR--AAFAPERLELHVGDALDLDLA---SLGPPPEGGWRVVGNLPYNISTPLLFHL 122 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + L Q+EV ER+TA S YGRL+V+ R +A +F + P F P Sbjct: 123 LDQMEA---VRDMHFLLQREVVERMTAVPGSKTYGRLTVMLAARARAQSLFGVPPGAFHP 179 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ P P+ K+ +AF RRKTLR+ L L + A + Sbjct: 180 PPKVHSAVVRITPLEAPLVDSALYPVFAKVVNQAFSSRRKTLRRGLSGLVDAARIEAAQL 239 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + R E + + F + ++ Sbjct: 240 DPGARPETVDVHGFAALARMVA 261 >gi|162452719|ref|YP_001615086.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56'] gi|161163301|emb|CAN94606.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56'] Length = 276 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 134/274 (48%), Gaps = 13/274 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ +L + PKK GQNFL+D++ ++IAE++ + +G VIEIGAG G LT+ LL Sbjct: 2 AIAELLRTRGLSPKKGFGQNFLVDVDAARRIAEAATTTEGGAVIEIGAGLGALTRPLLDR 61 Query: 69 GARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANL 125 A V+ IE+D+ PIL++ RL +++ DA +VD+ + P + NL Sbjct: 62 -ATHVVAIERDRDLVPILREQLAGPIEEGRLTLLEADAAQVDWVGALSGHARPHAVAGNL 120 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+I RLL A T + + Q EV +R+ A S YG LSV Sbjct: 121 PYHITGRLLEQ---ATTVAHQIDRAVFMVQLEVADRLVAAPGSADYGALSVFVQAAFDVR 177 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + F+P P+V S V+ P ++ + + AF RRKTLR + K L Sbjct: 178 RLLIARAGAFYPRPEVDSAVVVLTPWRPRRAEETDAFRAAVRAAFSARRKTLRNAWKNLY 237 Query: 246 G------ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E AGI + R E LS+E F RI Sbjct: 238 GWSSQELERHAKDAGISLDARGETLSVEAFARIA 271 >gi|257455041|ref|ZP_05620285.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60] gi|257447554|gb|EEV22553.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60] Length = 289 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 143/289 (49%), Gaps = 25/289 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ LSH P+K GQNFL D I+ +I +S + ++EIG G G +T+ LL Sbjct: 2 TVSAFLSHQ---PRKRFGQNFLHDQVIIGRIIDSIHAGRDDLMVEIGPGMGAITEPLLK- 57 Query: 69 GARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFN----------ISS 117 ++ V+E D L+ I + + L I++ +A++VD+ F Sbjct: 58 EVNRLTVVELDTDLADSLRIRIGANSNDGLTIVKANAMEVDYRALFQQIIGDYPNDTTDK 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +RI+ NLPYNI T LLF+ +S + E + + QKEV +RITA +S YGRLS++ Sbjct: 118 KMRIVGNLPYNISTPLLFHLLS---FADVIEDMHFMLQKEVVDRITAAVDSREYGRLSIM 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRK 235 + + + + F P PKVTS V P+ PI E L + +EAF RRK Sbjct: 175 MQYYCETDYLLTVPNGAFNPPPKVTSAVFRLRPYQQKPIVADDEKLFALVVREAFNHRRK 234 Query: 236 TLRQSLKR-----LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 TLR K+ E+ L G+ R E LS++DF + N + N Sbjct: 235 TLRAIFKKSPILPAVTEHQLVAWGLNPLARPETLSVQDFVTLANGIAAN 283 >gi|15612620|ref|NP_240923.1| dimethyladenosine transferase [Bacillus halodurans C-125] gi|27151607|sp|Q9KGK4|RSMA_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|10172669|dbj|BAB03776.1| dimethyladenosine transferase [Bacillus halodurans C-125] Length = 289 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 140/280 (50%), Gaps = 19/280 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL+ + KK +GQNFL+D N+L+ I + + IEIG G G LT+ L A Sbjct: 12 KEILAKHGFTFKKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQ-LARQA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 ++V+ E DQ+ P+L++ + + N + +I +D LK D ++ F + ++ANLP Sbjct: 71 KRVVAFEIDQRLIPVLRETLAPYEN-VTVINEDVLKADVKQVIATTFEEGQDLMVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T +L + A P + ++ Q EV +RI A+ + YG LS+ + A + Sbjct: 130 YYVTTPILMKLLEAK-LP--VRGIVVMIQAEVADRIAAKPGTKEYGSLSIAAQYYATAEL 186 Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL--- 241 + VF P P V S V+ I P+ E L I + +F RRKT+ +L Sbjct: 187 AVKVPKTVFVPQPNVDSAVLRLTIREKPPVTVADEEWLFAIVRASFANRRKTILNNLIHN 246 Query: 242 -----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++ L +AGI+ + R E L+IE+F ++ L Sbjct: 247 LVGKERKDKAVQALAEAGIDPSRRGETLTIEEFANLSEQL 286 >gi|226355955|ref|YP_002785695.1| dimethyladenosine transferase [Deinococcus deserti VCD115] gi|226317945|gb|ACO45941.1| putative dimethyladenosine transferase [Deinococcus deserti VCD115] Length = 292 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/276 (34%), Positives = 147/276 (53%), Gaps = 21/276 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+ G ++E+G G G LT+ + + G Sbjct: 28 VRELLNRHGLRPTKSLGQNFLIDGNILRAIAEAGGAQAGARILEVGPGLGVLTREIASRG 87 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +EKD++ P L + + +E+I DAL D+ ++ R+IANLPY I Sbjct: 88 A-HVTALEKDERLRPALAETLAGL--DVELIWGDALDFDYA---SLPEGTRVIANLPYYI 141 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LL ++ A P S T+L QKEVG+R+ A+ YG LS L + D Sbjct: 142 TGVLLSRFMHA----PGIVSATVLVQKEVGQRLAARPGEDAYGFLSALAALHGSVRHVRD 197 Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F P+P VTS+VI P P +L K + A RRKTLR +L+ +G E Sbjct: 198 VPKGAFLPAPDVTSSVIRLDFDRSRPAPEA--ALLKFVEGALHHRRKTLRNNLRMIGHEG 255 Query: 249 -----LLHQAGIETNLRAENL---SIEDFCRITNIL 276 L AG+ ++RAE++ +ED R ++ Sbjct: 256 PAIDAALIAAGLRPDVRAEDVPLSKLEDVARRLGVV 291 >gi|282883264|ref|ZP_06291862.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B] gi|281296894|gb|EFA89392.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B] Length = 288 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 142/278 (51%), Gaps = 24/278 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + IL Y K +GQNFL+D NI++KI +S+ + V+EIG G G LT+ Sbjct: 6 KPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEE- 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRII 122 L L A+KV+ IE D++ +L++ + + ++II D LK+D + + +++ Sbjct: 65 LALRAKKVVSIEIDKRLEDLLEE--TLPYDNVKIIYKDFLKLDLKTLIDEEFKGQNFKVV 122 Query: 123 ANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ANLPY I T +LL N + E + ++ QKEV +R TAQ + YG LSV Sbjct: 123 ANLPYYITTPIIEKLLLNSEN-------IEIINVMIQKEVAKRFTAQPQTKDYGSLSVFI 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + +A F + VF P P V S V + E KI + AF KRRKTL Sbjct: 176 QFFCRAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKTLV 235 Query: 239 QSLK-------RLGGENLLHQAGIETNLRAENLSIEDF 269 SL + +L +GI+T RAE+L++EDF Sbjct: 236 NSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDF 273 >gi|261380520|ref|ZP_05985093.1| dimethyladenosine transferase [Neisseria subflava NJ9703] gi|284796774|gb|EFC52121.1| dimethyladenosine transferase [Neisseria subflava NJ9703] Length = 259 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAK-KLNRLHVCEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF +I +I+ NLPYNI T LLF ++ Sbjct: 66 IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P+P Sbjct: 121 DDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAAEKYVALSNYLV 255 >gi|227501188|ref|ZP_03931237.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098] gi|227216589|gb|EEI81993.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098] Length = 280 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 136/271 (50%), Gaps = 13/271 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K I+ Y K +GQNFL+D N ++KI + + D V+EIG G G +T + Sbjct: 10 VKDIIDFYNFRFSKSLGQNFLVDKNFVEKIVDRADVKDT-NVLEIGPGIGTITYEMAK-S 67 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126 A+KV+ IE D PI+++ + N ++I +D LK + EK ++++NLP Sbjct: 68 AKKVVAIEIDSALLPIIEENMEEFDN-FKLIHEDILKANLEKIVEEEFSGEAFKVVSNLP 126 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ +++ P +T++ QKEV +R+ A + Y LSV + T+A Sbjct: 127 YYITTPIIEKLVTS-KLP--CTDMTIMVQKEVADRMLATEKDKEYSSLSVFIKYFTEAEK 183 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + ++ VF P PK+ STV+ L I F KRRKT+ SL Sbjct: 184 ITNVPKSVFMPQPKIDSTVLKLKLRKYRDDVDESKLFAIVHAGFNKRRKTILNSLADAVD 243 Query: 247 ENLLHQA----GIETNLRAENLSIEDFCRIT 273 + L A GI LRAENLS++DF +T Sbjct: 244 KEKLRLAFDKLGINEKLRAENLSLDDFIDLT 274 >gi|298369212|ref|ZP_06980530.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283215|gb|EFI24702.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str. F0314] Length = 259 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 11/258 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE D+ Sbjct: 7 RKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF A+ Sbjct: 66 IVGRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKL--AE 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PKV Sbjct: 119 VADDVVE-MHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPKV 177 Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S V+ IP + I E K+ + AF +RRKT+R +LK G+ L GI Sbjct: 178 DSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKEFAGDEDLQAVGISPQD 237 Query: 260 RAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 238 RAEHIAPEKYVELSNYLV 255 >gi|238764652|ref|ZP_04625597.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638] gi|238697144|gb|EEP89916.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638] Length = 214 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 13/209 (6%) Query: 75 VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIG 130 VIE D+ L + HP ++L I Q+DA+K++F + +R+ NLPYNI Sbjct: 6 VIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAEQAGQSLRVFGNLPYNIS 61 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T L+F+ S + + + QKEV R+ A NS YGRL+V+ + + ++ Sbjct: 62 TPLMFHLFS---YTNAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEV 118 Query: 191 SPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P+PKV S V+ IPH+N P P + L +IT +AF +RRKT+R SL L Sbjct: 119 PPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLFTSE 178 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L + GI+ +RAEN+S+ +C++ N L+ Sbjct: 179 QLIELGIDPIMRAENISVAQYCKLANWLS 207 >gi|294789043|ref|ZP_06754283.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453] gi|294483145|gb|EFG30832.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453] Length = 258 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 131/258 (50%), Gaps = 11/258 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L T ++ V E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDIVIEIGPGLAAITEPL-TRKLNQLHVCEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK N+L I D L+ DF +I +I+ NLPYNI T LLF AD Sbjct: 66 IIQFLK--KQPFANKLVIHDGDVLQFDFR---SIVGKKKIVGNLPYNISTPLLFRL--AD 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV ER+ A + YGRLSV+ + ++ ++ P F P+PKV Sbjct: 119 VADDVID-MHFMLQKEVVERMVAVPKTNDYGRLSVMLQYFFDMELLIEVPPESFDPAPKV 177 Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S V+ IP LN I + + +++F +RRKT+R +LK + ++ L GIE Sbjct: 178 DSAVVRMIPVLNRIGKAENFKHFSDLVRDSFHQRRKTIRNNLKNIANDDDLLAVGIEPQQ 237 Query: 260 RAENLSIEDFCRITNILT 277 RAE ++ E + +++N L Sbjct: 238 RAEEIAPELYVKLSNYLV 255 >gi|304382942|ref|ZP_07365424.1| dimethyladenosine transferase [Prevotella marshii DSM 16973] gi|304335967|gb|EFM02215.1| dimethyladenosine transferase [Prevotella marshii DSM 16973] Length = 280 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 146/279 (52%), Gaps = 29/279 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL+I ++IA++ + + ++E+G G G LTQ L+T R+V V+E D+ Sbjct: 6 PKKHLGQHFLTDLDIARRIADTVDACPRLPILEVGPGMGMLTQFLVT-KERQVRVVEIDR 64 Query: 81 Q-------FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + FP++ D +I+++D L+++ +K FN P + N PY+I +++ Sbjct: 65 EAATYLHKHFPLMHD---------DILREDFLRMNLQKVFN-GQPFVLTGNYPYDISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + Q+EV R+ A + + YG LSVL +F + Sbjct: 115 FFKMLDNKDLIP---CCTGMIQREVALRMAATEGNKTYGILSVLMQAWYDVEYLFTVDET 171 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S VI + + + C ++I + FG+RRK LR SL+++ Sbjct: 172 VFNPPPKVKSAVIRMTRNGVTDLGCDERLFRRIVKAVFGQRRKMLRVSLRQIFSSIPASP 231 Query: 253 AGIETNL---RAENLSIEDFCRITNI----LTDNQDIAI 284 A + ++ R E LSI F +TN+ L +D+A+ Sbjct: 232 AFYDRDIMTRRPEQLSIPQFVELTNLVEAELRQLRDVAV 270 >gi|294669503|ref|ZP_06734570.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308416|gb|EFE49659.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 262 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE D+ Sbjct: 7 RKRFGQNFLQDTRIIADIVNAVRPQAEDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF+ +I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVGRLKTLP--FADKLVIHEGDVLQFDFK---SIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFEPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I + K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFGHFAKVVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVELSNYLV 255 >gi|300088594|ref|YP_003759116.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528327|gb|ADJ26795.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 306 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 20/290 (6%) Query: 4 NNKSHSLKT----ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 N+ S S+KT +L + + +K +GQNFL+D +L KI ++G TV+E+G GPG Sbjct: 25 NSDSVSIKTEVRRLLDSHGLSARKGLGQNFLIDRGVLDKIVRAAGIETADTVVEVGPGPG 84 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T L A +VI +E D L++ Q N +++I D L + + +SP Sbjct: 85 VMTAALAE-KAGQVIAVELDFGMVAALRETVGQRSN-VKVIAGDILDISPSELTG-ASPY 141 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I + +L +++ A P SLT++ QKEV +ITAQ P L++ Sbjct: 142 KVVANLPYYITSPVLRHFLEASHRP---SSLTVMVQKEVARQITAQ--PPEMSLLALGVQ 196 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + ++ + F+P+PKV S ++H P P + ++ + FG RRK L Sbjct: 197 FFGRPRVVSYVPAGCFYPAPKVASAILHIEVFPERKLPPKQEKGFFRLARAGFGTRRKQL 256 Query: 238 RQSLK-RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +L LG + L QAGI RAE LSI+++ + + + + D Sbjct: 257 ANALSGGLGADKANVIQYLKQAGIVPERRAETLSIDEWLALREVWSFDDD 306 >gi|313891618|ref|ZP_07825225.1| dimethyladenosine transferase [Dialister microaerophilus UPII 345-E] gi|313119896|gb|EFR43081.1| dimethyladenosine transferase [Dialister microaerophilus UPII 345-E] Length = 284 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 15/270 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 ++ + I K +GQNFL+ +I+K+IA ++ + V+EIG+G G LTQ L GA Sbjct: 15 LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 VI E D+ IL+ + N ++II +D LK D K + + ANLPY I T Sbjct: 74 VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + +D +P + + QKEV ERI+A+ + YG LS+ + + + DI P Sbjct: 132 ILLYLVQSD-FP--ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG---- 246 F P P VTST++ P + ++ + FG+RRK ++K GG Sbjct: 189 TAFIPRPAVTSTILKMKKRDKPAVEVTDKKLFFRLVKMGFGQRRKVFTNAMKS-GGIPKD 247 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITN 274 +L +AGI+ R E S+E++ R+ N Sbjct: 248 MINEILFKAGIDGKRRGETFSMEEYARLAN 277 >gi|85859079|ref|YP_461281.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB] gi|119365852|sp|Q2LSQ6|RSMA_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85722170|gb|ABC77113.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB] Length = 280 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 17/280 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ IL ++ I P K +GQ FL D +++KKI E + + T++EIG+G G +T ++ Sbjct: 4 VRQILRNHDIKPVKRLGQCFLADFSVMKKIVELAEIKEDETIVEIGSGLGLMTSLMAERA 63 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127 A V +E D + +LK+ ++ N + +I D LK DF N I+II N+PY Sbjct: 64 AW-VHAVEIDGKLVSVLKERLKEYHN-VTVIHGDILKYDFLTALGENSVKKIKIIGNIPY 121 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + +LF+ + + L+ QKEV +R+ A + YG +VL G + + Sbjct: 122 SISSPILFHILDHRKQ---ISTAVLMMQKEVADRLCAVPGTKAYGIPTVLFGLYARISRE 178 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL- 244 ++P F+P P+VTSTV+ + P+ ++ + AF +RRKTL ++K Sbjct: 179 LTVAPGCFYPKPEVTSTVVKMLIPEEPLYWVENDALFFRLVKAAFAQRRKTLLNNMKNAH 238 Query: 245 -----GG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G ENLL G +RAE LSI+ F + N L+ Sbjct: 239 WKDCDAGRIENLLRDMGAGEKIRAEELSIQQFAALCNSLS 278 >gi|312144343|ref|YP_003995789.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus'] gi|311904994|gb|ADQ15435.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus'] Length = 295 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 19/281 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLG 69 K IL Y + KK +GQNFL+D NI+ I ++ +IEIG G G+LTQ LL L Sbjct: 12 KKILKEYDLRLKKGLGQNFLIDYNIIDIIINAAEIDGDELLIEIGPGIGSLTQALLEELK 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127 K+I IEKD + +LK+I Q N+L+++ +DAL ++++K N I++IANLPY Sbjct: 72 DGKLIAIEKDAEMVKVLKEIFPQQ-NKLKLLNEDALAIEWKKIAKENKGMGIKVIANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + T ++ + + ++ E + + QKEVGER+++ + +G LSV + K ++ Sbjct: 131 YVTTPIIMSILESEIE---LEKMIFMVQKEVGERMSSGPGTKKFGSLSVAVQYHMKPEIV 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCL---ESLKKITQEAFGKRRKTLRQSLKR 243 + VF P P V S ++ P+ NP + E +I + F +RRKTLR SL + Sbjct: 188 HQVPSSVFLPQPDVDSVIVSLTPYSENPHQKKVIDQEFFFQIVKSIFQQRRKTLRNSLSK 247 Query: 244 LGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 NL L GI R E L I + ITN L Sbjct: 248 SAVINLDRDLVTKALELEGIGLKKRGEKLEISEMISITNRL 288 >gi|229825723|ref|ZP_04451792.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC 49176] gi|229790286|gb|EEP26400.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC 49176] Length = 300 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 151/288 (52%), Gaps = 24/288 (8%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y +K GQNFL+D ++L+KI +++ V+EIG G G +TQ L AR Sbjct: 12 AILKKYDFTFQKKFGQNFLIDTHVLEKIVDAADIGKDDLVLEIGPGIGTVTQYLCE-AAR 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128 +VI +E D++ ILKD S + N +E+I +D LKVD N PI++++NLPY Sbjct: 71 QVIAVEIDRKLIKILKDTLSAYDN-VEVINEDILKVDIAALVEEKNEGKPIKVVSNLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + + P + +TL+ Q+EV R+ A + YG LS+ + + + Sbjct: 130 ITTPIIMTLL--EKRVPVTD-MTLMMQEEVARRMQAAPGNKDYGALSLAVQYYSVPYIAA 186 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSL----- 241 + + F P P V S V++ H P + E + K+ + +F +RRKTL+ L Sbjct: 187 FVPQNCFMPRPNVGSAVVNLKCHEKPPVEVMDEELMFKLIKASFAQRRKTLQNGLTNSAE 246 Query: 242 ----KRLGGENLLHQA---GIETN--LRAENLSIEDFCRITNILTDNQ 280 K E +L G++ N +R E L++++F +++I ++N+ Sbjct: 247 LDFTKEEITEAILKMQELLGMKQNPLIRGETLTLKEFACLSDIFSNNK 294 >gi|183602652|ref|ZP_02964016.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis HN019] gi|219684013|ref|YP_002470396.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191618|ref|YP_002969012.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197023|ref|YP_002970578.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218070|gb|EDT88717.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis HN019] gi|219621663|gb|ACL29820.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis AD011] gi|240250010|gb|ACS46950.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251577|gb|ACS48516.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794610|gb|ADG34145.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis V9] Length = 297 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 21/282 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI +G G V+E+G G G+LT +L Sbjct: 14 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIR 120 GA + +E D Q+ + + NR ++ DALKV + ++ + Sbjct: 74 ETGA-DLTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++ANLPYN+ T +L + F +S ++ QKEV ER++AQ S YG SV Sbjct: 133 LVANLPYNVATPILLTLLER-----FGNLDSFLVMVQKEVAERLSAQPGSKVYGTPSVKL 187 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFG 231 W A + +I +VF+P+P V S ++ F H P + + ++ +F Sbjct: 188 AWYGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFA 247 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 +RRKTL +L+++ +AGI+ R E L I++F + Sbjct: 248 QRRKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALA 289 >gi|225714488|gb|ACO13090.1| Mitochondrial dimethyladenosine transferase 1, mitochondrial precursor [Lepeophtheirus salmonis] Length = 330 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 23/282 (8%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P+K + QNF+LD L ++++ +GSL TV+E+G GPG +T+ +L GA+KV VIEKD Sbjct: 4 VPRKKLSQNFILDPKTLSRLSKVTGSLYNKTVVEVGPGPGGITRAILEQGAQKVFVIEKD 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPIRIIANLPYNIG 130 +F P L + NRL I D L + +K N IR+I NLP+N+ Sbjct: 64 SRFLPSLDLLREASGNRLSIKIGDCLHFNTQKLLNSDLKSNWPDQVPNIRLIGNLPFNVA 123 Query: 131 TRL---LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 T LF +S ++ + L FQ EV R+ A H RLSV+ K Sbjct: 124 TPYVVKLFECMSDRSNIFSFGRVPSILTFQHEVAYRLIAPPGDKHRCRLSVMAQNYAKID 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKR 243 + + F P+P+V V IP P I + L++ +T K++ R SL+ Sbjct: 184 YKYTLPGAAFVPTPEVNVGVAVLIPLSVPYIDVPFKFLERVVTTIMMHKQKSVFRTSLRL 243 Query: 244 LGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E LL AG+ + R +L+++DF RIT D Sbjct: 244 FPSEVRGKMAMQLLDVAGVSKDKRPLDLTMDDFARITYTYQD 285 >gi|297616271|ref|YP_003701430.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM 12680] gi|297144108|gb|ADI00865.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM 12680] Length = 292 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 21/286 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L+ Y + PKK +GQ+FLLD N+L IA++ V+EIGAG G LT L Sbjct: 11 VRAVLAKYNLHPKKRLGQHFLLDHNVLTSIAKACELNQNDYVVEIGAGIGALTGYLAQ-E 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS--SPIRIIA 123 A+ V+ IE D LK++ + N ++ + D LK++ E+ F+++ + ++ Sbjct: 70 AKGVLAIEVDPDLSEPLKEVLAGRDN-VKTLFGDILKLNIERETKQAFSLAPEASYKVCG 128 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I T ++F+ ++ T P ++ L+ Q+EV ER+ A + YG L+V+ ++ + Sbjct: 129 NLPYYITTPIIFHLLA--TAPSMCWAV-LMVQREVAERMLAPPGTKDYGMLTVMVRYQAE 185 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQS 240 M+ +SP+ F P P+V S VI P P + + K + +EAF +RRKT+ Sbjct: 186 VEMVRRVSPNCFRPRPEVDSAVIRVTPR-RARPWAIRNEDVFKGLVKEAFQRRRKTIHNI 244 Query: 241 LKRLGGENLLHQA------GIETNLRAENLSIEDFCRITNILTDNQ 280 + G + A G+E R E L I++F +I + ++ + Sbjct: 245 VAEFFGVDKAEAAQKLGVLGVEPKRRPETLEIDEFGKIADAFSEQE 290 >gi|119356986|ref|YP_911630.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266] gi|166221658|sp|A1BFM9|RSMA_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119354335|gb|ABL65206.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266] Length = 269 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 138/263 (52%), Gaps = 11/263 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K H +I KK +GQNFL D NI +KI S + T++EIG G G LT+ + T+ Sbjct: 2 IKVEYKHTEIAVKKKLGQNFLTDRNITRKIVTESETNPDDTILEIGPGFGALTREISTIT 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 R V+EKD + +++ ++P L +I+ D L VD +K P+R++ N+PY I Sbjct: 62 PR-FTVVEKDPKLASFIRN---EYPE-LTVIEGDFLTVDLKKIAG-EKPLRVLGNIPYAI 115 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +LF + S TL+ Q EV RITA+ + YG L+V + +F Sbjct: 116 TSPILFKLLENRH---ILLSATLMMQHEVALRITAKPRTKDYGILAVQMQAFCETKYLFR 172 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + VF P P V S VI P +N E + + AF +RRKTL+ +LK+ + Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKVNDPVSDREGFSRFVRCAFHQRRKTLQNNLKKTYELDR 232 Query: 250 LHQAGIETNLRAENLSIEDFCRI 272 + + ++ RAE LSI++F R+ Sbjct: 233 VESSVLKQ--RAEELSIDEFFRL 253 >gi|89892881|ref|YP_516368.1| hypothetical protein DSY0135 [Desulfitobacterium hafniense Y51] gi|219666144|ref|YP_002456579.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2] gi|119365023|sp|Q251W8|RSMA_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807864|sp|B8FY38|RSMA_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89332329|dbj|BAE81924.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536404|gb|ACL18143.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2] Length = 278 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/269 (33%), Positives = 143/269 (53%), Gaps = 20/269 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL+D +++ IA +S I V+EIG G G LT+ +L A+KV +E D+ Sbjct: 20 KSLGQNFLMDDRVIEAIAAASIKDPEIPVVEIGPGLGVLTR-VLAQKAQKVWAVELDRGK 78 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 +L+ P ++I+ DALK+D + + + ++ NLPY I + LL +++ Sbjct: 79 VNLLQRELQGLP--VDILNMDALKLDLKDIWGTGKGV-LVGNLPYYITSPLLMHFLEQKD 135 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 S+ ++ QKEV +R+ A+ YG LS+ + +F++ P F+P+PKVT Sbjct: 136 ---SLASMVVMVQKEVADRLVAKPGGKDYGILSIAAQVSAQGEKLFEVPPQAFWPAPKVT 192 Query: 203 STVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-------KRLGGENLLHQ 252 S V+ F L P K ++ + AF +RRKTL SL K+ GE +L Sbjct: 193 SAVVRF--ELRSYPGFRVKEKDFFRVVKAAFSQRRKTLGNSLAGGLGLPKQQIGE-ILAA 249 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281 AG++ RAE LSI++F +T + N D Sbjct: 250 AGVDEQRRAETLSIDEFQAVTEAVMKNLD 278 >gi|289177753|gb|ADC84999.1| Dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis BB-12] Length = 331 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 21/282 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI +G G V+E+G G G+LT +L Sbjct: 48 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 107 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIR 120 GA + +E D Q+ + + NR ++ DALKV + ++ + Sbjct: 108 ETGA-DLTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 166 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++ANLPYN+ T +L + F +S ++ QKEV ER++AQ S YG SV Sbjct: 167 LVANLPYNVATPILLTLLER-----FGNLDSFLVMVQKEVAERLSAQPGSKVYGTPSVKL 221 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFG 231 W A + +I +VF+P+P V S ++ F H P + + ++ +F Sbjct: 222 AWYGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFA 281 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 +RRKTL +L+++ +AGI+ R E L I++F + Sbjct: 282 QRRKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALA 323 >gi|322800097|gb|EFZ21203.1| hypothetical protein SINV_11803 [Solenopsis invicta] Length = 353 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 144/292 (49%), Gaps = 26/292 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ IL Y++ K + QNFL+D N+ KI + +G+L G V+EIG GPG LT+ +L Sbjct: 11 TIRDILKIYRLNAIKRLSQNFLMDHNLTDKIIKKAGNLAGSQVLEIGPGPGGLTRSILRR 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------NISS 117 +++V+EKD++F P L+ ++ +++II D+ L + E F N Sbjct: 71 VPERLVVVEKDERFKPTLEMLAESFSAINGKMDIIYDNILNTNIESLFPEEKKRTWNDKP 130 Query: 118 P-IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 P I +I NLP+++ T L+ W+ A W +TL FQKEV ER+ AQ Sbjct: 131 PDIFLIGNLPFSLSTHLIIKWLHAIAEQRGPWAFGRTKMTLTFQKEVAERLVAQPFGEQR 190 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ T T+ F I F P P V V+ F P + P + +K+ + F Sbjct: 191 CRLSVMAQAWTFPTLRFIIPGKAFVPKPDVDVGVVSFAPLVKPRTQHDFKFFEKVVRHLF 250 Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274 R+K + ++ L G + A +E LR L++E+ R+ Sbjct: 251 SFRQKYSIRCIETLFPKERCKDLGLMMYKLADLEPTLRPTQLTVEEVDRLAT 302 >gi|333029846|ref|ZP_08457907.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides coprosuis DSM 18011] gi|332740443|gb|EGJ70925.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides coprosuis DSM 18011] Length = 262 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/264 (34%), Positives = 135/264 (51%), Gaps = 22/264 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKKY+GQ+FL D I + IA + + I ++E+G G G LTQ LL R + V++ D Sbjct: 6 PKKYLGQHFLKDQKIAQDIANTVDLIPEIPILEVGPGMGVLTQYLLP-KERPIKVVDLDT 64 Query: 81 QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + FP LK+ +II+ D L ++ + F+ P + N PYNI +++ Sbjct: 65 ESIFYLYEEFPALKN---------DIIEADFLAMNLNQVFD-GKPFVLTGNYPYNISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + QKEV ERI A+ YG LSVL +F +S Sbjct: 115 FFKMLDNKEIIPLC---TGMIQKEVAERIAAKPGKKTYGILSVLIQAWYDVEYLFTVSEK 171 Query: 194 VFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S VI +++ + C + K++ + F +RRKTLR S+K + G+N Sbjct: 172 VFNPPPKVKSAVISMKRNNVSALGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKNSPIT 231 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 R E LS+E+F +ITN++ Sbjct: 232 EDDIFMKRPEQLSVEEFIKITNLV 255 >gi|167769167|ref|ZP_02441220.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM 17241] gi|167668807|gb|EDS12937.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM 17241] Length = 303 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 139/277 (50%), Gaps = 20/277 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L + K +GQNFL++ + ++AE G+ G+ V+EIGAG G LT L Sbjct: 28 IRDVLGRHGFTFSKALGQNFLINPTVCPRMAEQGGARPGVGVLEIGAGVGVLTAELARR- 86 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124 A +V+ +E D + P+L + + N ++II D L+VD E+F + I + AN Sbjct: 87 ADRVVCVEIDARLLPVLAETLAGFDN-IKIINADVLQVDLHALIAEQFAGLD--IVVCAN 143 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I + ++ + P +S+T++ QKE +R+ AQ + G +S+ + ++ Sbjct: 144 LPYYITSPVVMALLE-QRLP--VQSVTVMVQKEAAQRLCAQPGTRGVGAVSIAVRYFSEP 200 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242 M+F +S F PSP V S VI P E K+ + AF RRKTL L Sbjct: 201 HMLFAVSRGSFLPSPDVDSAVIRLDIRSAPAVDAGEPAVFFKVVRAAFSMRRKTLLNCLS 260 Query: 243 RLGG------ENLLHQAGIETNLRAENLSIEDFCRIT 273 G LL +AG+ + RAE LS+E F I Sbjct: 261 SGLGLSKGNTSALLARAGVPSGARAEQLSMEQFAAIA 297 >gi|227487807|ref|ZP_03918123.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092309|gb|EEI27621.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 286 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 138/274 (50%), Gaps = 15/274 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + I+P K +GQNFL D N ++ I ++G VIE+G G G+LT + L Sbjct: 13 IRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPGLGSLT-LGLVGE 71 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V +E D++ L K ++ P RL ++ DAL V E F + P I+ANL Sbjct: 72 VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNADALAVTREAFGE-AEPTAIVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + T P L ++ Q+EV +R++A + YG SV + + Sbjct: 131 PYNVAVPVLLHLLR--TVPSIRRVLVMV-QEEVADRLSASPGTKIYGVPSVKASYFGEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + HVF+P+P V+S ++ NP E+L + AF +RRKTLR +L Sbjct: 188 KAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEALFPLVDAAFAQRRKTLRAALGSF 247 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E +L AGI+ R E L +++F RI Sbjct: 248 FGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281 >gi|257092443|ref|YP_003166084.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044967|gb|ACV34155.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 260 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 129/261 (49%), Gaps = 11/261 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78 + +K GQ+FL+D I+ I + V+EIG G LT LL L V+ I++ Sbjct: 4 VARKRFGQHFLVDRQIIDSIVDLVAVQRRDLVVEIGPGLAALTDPLLRRLDHLHVVEIDR 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137 D + + ++ RL I DAL DF + + +RI+ NLPYNI T LLF+ Sbjct: 64 DM----VARLRAAYSAERLSIHAGDALAFDFGRLAAEAGAKLRIVGNLPYNISTPLLFHL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q+EV ER+ A S +GRLSV+ +R + ++ P F P Sbjct: 120 AG---FGDGVRDMHFMLQREVVERMVAAPGSGDFGRLSVMLQYRFVMEWLLEVPPESFNP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFG--KRRKTLRQSLKRLGGENLLHQAGI 255 P+V S V+ IP L + + A +RRK LR SLK L GE L + G+ Sbjct: 177 PPRVHSAVVRLIPRLAGDLAADDEAQFAAVVATAFAQRRKMLRNSLKSLVGEARLAEFGV 236 Query: 256 ETNLRAENLSIEDFCRITNIL 276 RAE+LS++D+ R+ N L Sbjct: 237 SPTCRAEDLSVDDYVRLANSL 257 >gi|194333711|ref|YP_002015571.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271] gi|226732609|sp|B4S787|RSMA_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194311529|gb|ACF45924.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271] Length = 261 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 136/259 (52%), Gaps = 11/259 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K H +I KK +GQNFL D N ++KI +S+ G V+EIG G G LT +L + Sbjct: 3 KVQYKHTEIAVKKKLGQNFLTDRNTIRKIVQSAEIQPGDHVVEIGPGFGALTSAILEVCP 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +EKD++ +++ ++P+ + +++ D L+VDF K P++++ N+PY+I Sbjct: 63 -SFTAVEKDRKLADFIRE---EYPS-VNLVESDILEVDFAKLAE-EGPVKVMGNIPYSIT 116 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +LF + + S TL+ Q EV R+ A + YG L+V +F + Sbjct: 117 SPILFKLLENRSH---IISETLMMQHEVALRLAANPGTKEYGILAVQLQTFCDVRYLFKV 173 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P P+V S V+ +P P+ C ++ + AF +RRKTL+ +LK+ ++ Sbjct: 174 GKKVFRPRPEVDSAVVRIVPKKTPLDDCETEFRRFVRLAFQQRRKTLQNNLKQ--HYDIS 231 Query: 251 HQAGIETNLRAENLSIEDF 269 + E RAE+ +I +F Sbjct: 232 QLSASELQRRAESFTITEF 250 >gi|120613389|ref|YP_973067.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1] gi|226729744|sp|A1TWF5|RSMA_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120591853|gb|ABM35293.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1] Length = 253 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 135/260 (51%), Gaps = 14/260 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ LG V+ + Sbjct: 2 KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGRLTVVEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP-IRIIANLPYNIGTRLL 134 ++D + + + S +L++I+ D LKVDF N+ +P IRI+ NLPYNI T +L Sbjct: 62 DRD-----LAQRLRSH--GQLDVIESDVLKVDFSAVAANLGAPRIRIVGNLPYNISTPIL 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + E + QKEV +R+ AQ + YGRLSV+ WR + + P Sbjct: 115 FHLLEHVG---VVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPES 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S V+ +PH P P L+++ Q AF +RRK LR +L R E Sbjct: 172 FDPPPRVDSAVVRMVPHAAPAPVAPRLLEELVQVAFSQRRKLLRHTLGRW-LEARQFTGT 230 Query: 255 IETNLRAENLSIEDFCRITN 274 +T RAE + + D+ + Sbjct: 231 FDTQRRAEEVPVADYVALAQ 250 >gi|329768941|ref|ZP_08260368.1| dimethyladenosine transferase [Gemella sanguinis M325] gi|328836658|gb|EGF86316.1| dimethyladenosine transferase [Gemella sanguinis M325] Length = 286 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 136/268 (50%), Gaps = 16/268 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + KK +GQNFL+D NIL +I + +G D + VIEIG G G+LT+ + A++ Sbjct: 11 ILKKHGFTFKKSLGQNFLIDANILNRIVDGAGINDKVGVIEIGPGIGSLTEAVAK-RAKR 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128 VI E D + PIL + + + N +EII +D LKVD +K + I ++ANLPY Sbjct: 70 VISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIEEKMSDCEKIMVVANLPYY 128 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + I + ++ Q+EV R+ A+ + Y L++L + T +F Sbjct: 129 ITTPILTHLIENTKR---IDGYVVMMQREVANRLNAKVGTKDYNSLTILLNYYTNVEYLF 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241 + VF P+P V S V+ + K + F +RRKTL +L Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKDEKEFEADSKFFKFVRSCFVQRRKTLLNNLISSYGKD 245 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269 K+ +N + I++ R+E LS+ +F Sbjct: 246 KKQELQNSCLDSEIDSTRRSETLSLREF 273 >gi|170730479|ref|YP_001775912.1| dimethyladenosine transferase [Xylella fastidiosa M12] gi|182681823|ref|YP_001829983.1| dimethyladenosine transferase [Xylella fastidiosa M23] gi|167965272|gb|ACA12282.1| rRNA (adenine-N(6)-)-methyltransferase [Xylella fastidiosa M12] gi|182631933|gb|ACB92709.1| dimethyladenosine transferase [Xylella fastidiosa M23] gi|307578073|gb|ADN62042.1| dimethyladenosine transferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 297 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +SH +++ L + KK GQ+FL+D + +I + ++EIG G G +T L Sbjct: 29 ESHGMESRL--FNTPAKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPL 86 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124 L + IE D+ L ++ +L+II D L VD + +R++ N Sbjct: 87 LKCCG-SLTAIELDRDLIAPLTAAATPI-GKLDIIHRDVLTVDLSILAKQGNKKLRLVGN 144 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI + +LF+ + + + QKEV +R+ A S YGRLSV+ + Sbjct: 145 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 201 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 T MF + P F P PKV S + +P +P + K+ I + AFG+RRKTLR SL Sbjct: 202 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 260 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + AGI TN RAE L + +F + N Sbjct: 261 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 293 >gi|295398232|ref|ZP_06808278.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563] gi|294973582|gb|EFG49363.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563] Length = 301 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 21/280 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + + KK +GQNFL + IL+ + + +G IEIG G G LT+ L + A+ Sbjct: 19 AILKKFNLDAKKSLGQNFLTEPQILQHMVDVAGVDKDTNAIEIGPGIGALTE-FLAINAK 77 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYN 128 +V+ E DQ+ P+L D S + N + I D L+ D P ++ANLPY Sbjct: 78 EVLAFEIDQRLLPVLADTLSDYDN-VTIKHQDILEADLNATMAAFPPAERTVVVANLPYY 136 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++FN + A ++ L+ QKEV ER+TA + YG LSV + A + F Sbjct: 137 ITTPIIFNLLEASFH---FDQFILMMQKEVAERLTAAPGTKAYGSLSVAIQYYCDAEIAF 193 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLG 245 + VF P P V S ++ + L+ +E+ + + +F +RRKT+ +L+ Sbjct: 194 TVPRTVFNPQPNVDSAILA-LNKLDKPRITVENEAFFFHLVRSSFKQRRKTIWNNLRAAF 252 Query: 246 GEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G+ L AG++ RAE L+I DF + + L Sbjct: 253 GKEEAVVEKMVKALEIAGVDQKQRAETLTIADFGHLADAL 292 >gi|261392930|emb|CAX50515.1| dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA dimethylase; high level kasugamycin resistance protein KsgA; kasugamycin dimethyltransferase) [Neisseria meningitidis 8013] Length = 259 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|332969263|gb|EGK08291.1| dimethyladenosine transferase [Kingella kingae ATCC 23330] Length = 262 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + + VIEIG G +T+ L T ++ V E D+ Sbjct: 12 RKRFGQNFLQDTRIISDIVNAVRPVPDDIVIEIGPGLAAITEPL-TRKLNQLHVCEIDRD 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK S N+L I D L+ DF +I+ +I+ NLPYNI T LLF A Sbjct: 71 IITFLKKQS--FANKLVIHDGDVLQFDFR---SIAGRKKIVGNLPYNISTPLLFRLAEIA 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A + YGRLSV+ + M+ ++ P F P+PK Sbjct: 126 DEVI----DMHFMLQKEVVERMVATPKTNDYGRLSVMLQYFFDMEMLIEVPPESFNPAPK 181 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ IP N I + + ++AF +RRKT+R +LK + ++ L GI Sbjct: 182 VDSAVVRMIPVENRIGKAENFKHFSDLVRDAFHQRRKTIRNNLKEIASDDDLQAVGILPQ 241 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE ++ + + +++N L + Sbjct: 242 QRAEEIAPDTYVKLSNYLVN 261 >gi|227542448|ref|ZP_03972497.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181646|gb|EEI62618.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 286 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 15/274 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + I+P K +GQNFL D N ++ I ++G VIE+G G G+LT + L Sbjct: 13 IRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPGLGSLT-LGLVGE 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V +E D++ L + H RL ++ +DAL V E F + P I+ANL Sbjct: 72 VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNEDALAVTREAFGE-AEPTAIVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + T P L ++ Q+EV +R++A + YG SV + + Sbjct: 131 PYNVAVPVLLHLLR--TVPSIRRVLVMV-QEEVADRLSASPGTKIYGVPSVKASYFGEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + HVF+P+P V+S ++ NP E L + AF +RRKTLR +L Sbjct: 188 KAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEVLFPLVDAAFAQRRKTLRAALGSF 247 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E +L AGI+ R E L +++F RI Sbjct: 248 FGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281 >gi|332519203|ref|ZP_08395670.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4] gi|332045051|gb|EGI81244.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4] Length = 270 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 145/267 (54%), Gaps = 15/267 (5%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIV 75 +++ KK++GQ+FL D +I ++IA++ SL+G V+EIG G G LT+ LL V Sbjct: 9 HQVKAKKFLGQHFLEDESIAEQIADAL-SLEGYKKVLEIGPGMGVLTKYLLKKPVT-TYV 66 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D + LK+ R I++ D LK D + F P I N PYNI T+++F Sbjct: 67 IEIDTESVEYLKNNYLNLAPR--ILEKDFLKYDVSETFG-DEPFAISGNFPYNISTQIVF 123 Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + D P F + +FQKEV +RI +++ S YG LSVLT A +F + P V Sbjct: 124 KTLELRDQIPEF----SGMFQKEVAQRICSKEGSKVYGILSVLTQAFYNAEYLFTVPPTV 179 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ 252 F P PKV S V+ N +PC + ++ ++AF +RRKTLR SLK +NL + Sbjct: 180 FNPPPKVDSGVLKLTRKKNYSLPCDEKLFFRVVKQAFQQRRKTLRNSLKTFELSDNL--K 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 A + R E L ++ F +T ++ ++ Sbjct: 238 ANVIFGKRPEQLDVQAFIELTTLIEND 264 >gi|309371330|emb|CBX33011.1| hypothetical protein CBG_11970 [Caenorhabditis briggsae AF16] Length = 393 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 28/290 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG+GPG +T+ +L Sbjct: 10 ALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGILEA 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPI----- 119 GA ++ V+E D +F P L+ ++ +R+ I DAL+ + ++K N S + Sbjct: 70 GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPWHDS 129 Query: 120 -----RIIANLPYNIGTRLLFNWISADTWPP-FWE----SLTLLFQKEVGERITAQKNSP 169 +I NLP+NI + L+ ++ ++ WE LTL FQ EV +R+ + Sbjct: 130 KLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPIACD 189 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228 R+S++ + + ++F IS F P P+V V+ F+P P + E L+K+ ++ Sbjct: 190 TRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 249 Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFC 270 F R+K + + LK L + LL + I+ + L +E F Sbjct: 250 VFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFA 299 >gi|71276283|ref|ZP_00652561.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon] gi|71898488|ref|ZP_00680660.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] gi|71162891|gb|EAO12615.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon] gi|71731801|gb|EAO33860.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] Length = 297 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +SH +++ L + KK GQ+FL+D + +I + ++EIG G G +T L Sbjct: 29 ESHGMESRL--FNTPAKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPL 86 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124 L + IE D+ L ++ +L+II D L VD + +R++ N Sbjct: 87 LKCCG-SLTAIELDRDLIAPLTAAATPI-GKLDIIHRDVLTVDLSILAKQGNKKLRMVGN 144 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI + +LF+ + + + QKEV +R+ A S YGRLSV+ + Sbjct: 145 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 201 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 T MF + P F P PKV S + +P +P + K+ I + AFG+RRKTLR SL Sbjct: 202 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 260 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + AGI TN RAE L + +F + N Sbjct: 261 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 293 >gi|219684472|ref|ZP_03539416.1| dimethyladenosine transferase [Borrelia garinii PBr] gi|219672461|gb|EED29514.1| dimethyladenosine transferase [Borrelia garinii PBr] Length = 281 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 151/287 (52%), Gaps = 24/287 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K IL KI P+K GQN+L++ +I +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T +LL + E D ++ IL + + N ++I+ D F+K+ N + Sbjct: 66 LGAMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDF----FKKYPNENK 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L A + DI F+P+PKV ST + IP N I E K+ + F RRK Sbjct: 176 LVQSHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSSRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L+ ++ K + EN L + + R EN+S+E+F +I+N LT Sbjct: 235 LKNTIINFIKNKAILEENFLKEY---LDKRPENISVEEFIQISNTLT 278 >gi|59800723|ref|YP_207435.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA 1090] gi|293399578|ref|ZP_06643731.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62] gi|62900452|sp|Q5F9W4|RSMA_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|59717618|gb|AAW89023.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae FA 1090] gi|291610147|gb|EFF39269.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62] Length = 259 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|78485998|ref|YP_391923.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2] gi|119365859|sp|Q31F24|RSMA_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78364284|gb|ABB42249.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2] Length = 266 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 12/260 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL + I+++I + ++EIG G LT LL + +K+ +IE D Sbjct: 7 KKRFGQNFLNNDRIIQQIVAAIAPKPDQHLVEIGPGEAALTGPLLDI-VKKLDIIEIDND 65 Query: 82 FF-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNW 137 P+ K S H + DAL D+ + + +RI+ NLPYNI + LLF+ Sbjct: 66 LIGPLTKRFS--HNPAFHLHHTDALLFDYSQLLEAETETPSLRIVGNLPYNISSPLLFHL 123 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + + QKEV ERITAQ YGRLSV+ + + + + P F P Sbjct: 124 LK---YARYIQDMHFMLQKEVVERITAQPGVKAYGRLSVMIQYTCETEYLLTVGPENFTP 180 Query: 198 SPKVTSTVIHFIP-HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ P P + K+ ++AF ++RKTLR +LK + + G+ Sbjct: 181 PPKVDSAIVRLRPFEKRPFQAIDDKDFAKLVKQAFSQKRKTLRNNLKGFLNDEQIEACGL 240 Query: 256 ETNLRAENLSIEDFCRITNI 275 + ++RAE + +E F ++N+ Sbjct: 241 DPSVRAEKVPVEAFVLLSNL 260 >gi|15838739|ref|NP_299427.1| dimethyladenosine transferase [Xylella fastidiosa 9a5c] gi|9107283|gb|AAF84947.1|AE004029_7 dimethyladenosine transferase [Xylella fastidiosa 9a5c] Length = 290 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +SH +++ L + KK GQ+FL+D + +I + ++EIG G G +T L Sbjct: 22 ESHGMESQL--FNAPAKKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPL 79 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124 L + IE D+ L ++ +L+II D L VD + +R++ N Sbjct: 80 LKCCG-SLTAIELDRDLIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGN 137 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI + +LF+ + + + QKEV +R+ A S YGRLSV+ + Sbjct: 138 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 194 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 T MF + P F P PKV S + +P +P + K+ I + AFG+RRKTLR SL Sbjct: 195 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 253 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + AGI TN RAE L + +F + N Sbjct: 254 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 286 >gi|312889917|ref|ZP_07749461.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603] gi|311297449|gb|EFQ74574.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603] Length = 259 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D NI +KI S T V+E+G G G L+ LL + +I+ D Sbjct: 7 KKHLGQHFLTDKNIAEKIVNSLKLHGNYTQVLEVGPGMGILSDFLLQKTDYQTYLIDIDT 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + L+ Q +RL I D L++DF K F +SP II N PYNI +++LF + Sbjct: 67 ESYQFLQKKYPQLGSRL--INADFLEMDFGKTF--TSPFAIIGNFPYNISSQILFKVL-- 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D E + + FQKEV ER +A+ S YG LSV K +F + VF P PK Sbjct: 121 DNRQQVLEVVGM-FQKEVAERCSAKPGSKEYGILSVFLQAYYKVEYLFTVKAGVFNPPPK 179 Query: 201 VTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + P C E L ++ + F +RRKTLR ++ + + + + +L Sbjct: 180 VLSAVIRLTRNDTPELNCDEKLFWQLVKAGFNQRRKTLRNAISSVIPKEKITDDPL-LDL 238 Query: 260 RAENLSIEDFCRITN 274 RAE LS+ DF +TN Sbjct: 239 RAERLSVADFVTLTN 253 >gi|308388885|gb|ADO31205.1| putative dimethyladenosine transferase [Neisseria meningitidis alpha710] gi|325129842|gb|EGC52649.1| dimethyladenosine transferase [Neisseria meningitidis OX99.30304] gi|325202507|gb|ADY97961.1| dimethyladenosine transferase [Neisseria meningitidis M01-240149] gi|325207743|gb|ADZ03195.1| dimethyladenosine transferase [Neisseria meningitidis NZ-05/33] Length = 259 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|239616459|ref|YP_002939781.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1] gi|239505290|gb|ACR78777.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1] Length = 272 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/264 (35%), Positives = 137/264 (51%), Gaps = 12/264 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y I K +GQNF+ D IL +I + SG D TVIEIG G G LT L K Sbjct: 6 ILRKYGIHLKDSLGQNFIKDERILSRIVKDSGITDEATVIEIGIGLGTLTLKLAKKAK-K 64 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 VI E D++F I K++ S ++II +D LK D + + S P+ +AN+PY I + Sbjct: 65 VIGFEIDKRFEQIHKELLSD--KNIQIIYEDFLKADLKDY--DSRPLFYVANIPYYITSP 120 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + P +E+ L+ QKE ER+ A+ +S YG L+V G T +F++S Sbjct: 121 ILEKILFEG---PAFEAAILMVQKEYAERLLAKPSSKSYGALTVTIGAFTMVRRLFNVSR 177 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL--GGEN 248 F P+P V S+V+ I + E + + AF RRK L+ +LK + E Sbjct: 178 KAFIPAPAVDSSVVKLIMREQTLVPLNEKRRFRNFVKLAFSHRRKKLKNNLKPIIDNPEE 237 Query: 249 LLHQAGIETNLRAENLSIEDFCRI 272 L G N+RAE L+IE F ++ Sbjct: 238 FLRSLGFSVNVRAEELTIESFVKL 261 >gi|313900886|ref|ZP_07834376.1| dimethyladenosine transferase [Clostridium sp. HGF2] gi|312954306|gb|EFR35984.1| dimethyladenosine transferase [Clostridium sp. HGF2] Length = 291 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 136/270 (50%), Gaps = 18/270 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + + KK GQNFL++ I+ KIA + D V EIG G G LTQ L A Sbjct: 12 KEILETHGMFAKKNYGQNFLIESGIVDKIARHAVLSDHCVVFEIGPGIGALTQYLCEY-A 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +KV+ E D++ +L D ++ N E++ D L++D ++ + + I ANLP Sbjct: 71 KKVVSFEIDERLPDVLADTLQEYDN-FELVMSDFLEIDLKEWCRTYREEGYDVVIAANLP 129 Query: 127 YNIGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y I T +LF AD ++T++ QKEV +R A+ N+ Y LS++T +R + Sbjct: 130 YYITTPILFKIFESKADVA-----AITVMMQKEVADRFAAEVNTKDYNALSIITQYRCEV 184 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL-----RQ 239 T + + +VF P P V S V+ F P ES + + F +RRKT+ Sbjct: 185 TPVMKVPKNVFLPKPNVDSAVLQFRFRDTPQNIEEESFFPLVKACFRQRRKTILNNYGEY 244 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDF 269 + L ++GI+ RAE++++ +F Sbjct: 245 CQDKQQARAELEKSGIDCTRRAESVTLAEF 274 >gi|325136080|gb|EGC58690.1| dimethyladenosine transferase [Neisseria meningitidis M0579] Length = 259 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 176 KVDSAVVRIIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|328792787|ref|XP_001121333.2| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Apis mellifera] Length = 343 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 18/245 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S+K +L Y++ K + QNF+L+ N+ KI + +G+L+ V+EIG GPG LT+ +L Sbjct: 11 SIKDVLKIYRLRAMKELSQNFILNQNLADKIIKKTGNLNDCHVLEIGPGPGALTRSILKC 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISS-------- 117 +K+IV+EKD++F P L+ ++ ++EII DD +K++ F + Sbjct: 71 QPKKLIVVEKDKRFEPTLEMLADAFETINGKMEIIFDDIMKINMSNLFPSTEIKAWTEKC 130 Query: 118 -PIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I++I NLP+N+ T L+ + A D W +TL FQKEV ER+ AQ Sbjct: 131 PRIKLIGNLPFNVSTPLIIKLLHAISEKRDAWTFGKTRMTLTFQKEVAERLIAQPLDVQR 190 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ T + F I F P PKV ++ F+P P +K+T+ F Sbjct: 191 CRLSVMAQAWTHPVLHFIIPGTAFIPKPKVDVGLVTFVPLTIPRTKHEFSIFEKVTRHIF 250 Query: 231 GKRRK 235 R+K Sbjct: 251 SFRQK 255 >gi|195379696|ref|XP_002048613.1| GJ14068 [Drosophila virilis] gi|194155771|gb|EDW70955.1| GJ14068 [Drosophila virilis] Length = 420 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 23/292 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 S++ ++ YK+ K + QNFL+D + KI +++G +D V+E+G GPG +T+ +L Sbjct: 104 SIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKAAGRIDPRDIVLEVGPGPGGITRSILR 163 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 ++++++EKD +F +L++ + +++I +D L+ + E+ + + + +I Sbjct: 164 RQPQRLMLVEKDARFTETLQLLRECARPLNVQVDIYHEDILRFNIEQHVPDTAQRLHLIG 223 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP+ I TRLL NW A F + +TL FQKEV ERI A+ S RLS+++ Sbjct: 224 NLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAKLGSDQRCRLSIMS 283 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T+ + F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 284 QIWTEPLLKFIIPGKAFVPKPQVDVGVVKVIPLKKPKTQLPFSL--VERVVRHIFSMRQK 341 Query: 236 TLRQSLKRL----GGENLLHQ----AGIETNLRAENLSIEDFCRITNILTDN 279 R+ L G E H A ++ LR LS+++ R+ ++ D+ Sbjct: 342 YCRRGYSTLLPPEGREETTHALFQLADVQDTLRPFELSVDECLRLADVYADH 393 >gi|329122105|ref|ZP_08250713.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965] gi|327466912|gb|EGF12428.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965] Length = 286 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 15/270 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 ++ + I K +GQNFL+ +I+K+IA ++ + V+EIG+G G LTQ L GA Sbjct: 17 LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 75 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 VI E D+ IL+ + N ++II +D LK D K + + ANLPY I T Sbjct: 76 VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 133 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + +D +P + + QKEV ERI+A+ + YG LS+ + + + DI P Sbjct: 134 ILLYLVQSD-FP--ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 190 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG---- 246 F P P VTST++ P + ++ + FG+RRK ++K GG Sbjct: 191 TAFIPRPAVTSTILKMKKRDKPAVEVNDKKLFFRLVKMGFGQRRKVFTNAMKS-GGIPKD 249 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITN 274 +L +AGI+ R E S+E++ R+ N Sbjct: 250 MINEILFKAGIDGKRRGETFSMEEYARLAN 279 >gi|303245325|ref|ZP_07331609.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ] gi|302493174|gb|EFL53036.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ] Length = 283 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 124/259 (47%), Gaps = 11/259 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ +GQNFL D N KI + G G TVIEIG G G LT ++ G + +EKD++ Sbjct: 26 KRSLGQNFLSDPNTAAKIVSACGIAAGDTVIEIGPGRGALTGLIAAAGPSSFLALEKDRE 85 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + +S HP+ L + DAL+ D+ + +S +RII NLPYNI + LL++ + Sbjct: 86 ---LAAHLSRTHPS-LAVALTDALRQDWSRLDRLSGNVRIIGNLPYNIASPLLWDLCAGA 141 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T + + Q EV R+ A YG LS + F + P VF P PKV Sbjct: 142 T---RFTRAAFMVQHEVALRLCAGPGGREYGALSAWIASHVRVAYCFKVPPTVFRPRPKV 198 Query: 202 TSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGIET 257 S V+ P L+ P +L K+ + F KRRK L LK G L L GI Sbjct: 199 DSAVVAMTPLPLSDRPAEPLALAKLLKTLFSKRRKQLGGILKAWRGPELDDWLAGQGIRL 258 Query: 258 NLRAENLSIEDFCRITNIL 276 R E L+ + + +L Sbjct: 259 TDRPETLAPKQLAGLAEML 277 >gi|110638030|ref|YP_678238.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406] gi|118600861|sp|Q11UL8|RSMA_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110280711|gb|ABG58897.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406] Length = 258 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 134/268 (50%), Gaps = 22/268 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-------VIEIGAGPGNLTQMLLTLGA 70 K+ KK++GQ+FL D I + I +DG+T V+EIG G G LTQ LL + Sbjct: 3 KVKAKKHLGQHFLNDQQIAQDI------VDGLTLHGSYKEVLEIGPGMGVLTQYLLKNNS 56 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V++ D + LK + Q + ++I D LK D ++ II N PYNI Sbjct: 57 YHTKVVDIDGESIEYLKKVFPQLKD--DVIHGDFLKADLADWY--PDKFAIIGNFPYNIS 112 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +LF + P + +FQKEV ER A+ + YG SVL +F + Sbjct: 113 TEILFKVLDYREQIP---EVVGMFQKEVAERFAAKNGNKTYGITSVLLQAFYDIEYLFTV 169 Query: 191 SPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 HVF P PKV S VI + +PC + K+ + F RRKTLR +LK + +N+ Sbjct: 170 PEHVFTPPPKVKSGVIRLKRNNRTHLPCDEKEFFKVVKAGFNMRRKTLRNALKSINVQNI 229 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 I + RAE LS+++F +TN+L+ Sbjct: 230 SMDLPI-FDKRAEQLSVQEFFDLTNMLS 256 >gi|269125239|ref|YP_003298609.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183] gi|268310197|gb|ACY96571.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183] Length = 316 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 134/275 (48%), Gaps = 17/275 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF++D N +++I + + V+E+G G G+LT LL Sbjct: 13 VRELAARLGVRPTKTLGQNFVIDANTVRRIVREADLDETDVVVEVGPGLGSLTLALLER- 71 Query: 70 ARKVIVIEKDQ----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 ++V+ IE D Q ++ + + +RLE++ DAL+V P ++ANL Sbjct: 72 VQRVVAIEIDPVLAGQLPHTVRRRAPRLADRLEVVHADALRV---TELPGPPPTALVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++A +P L ++ Q EV ER+ A+ YG SV W A Sbjct: 129 PYNVAVPVVLHLLAA--FPTLRRGL-VMVQAEVAERLVARPGGKVYGVPSVKLAWHAHAR 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244 + VF+P P V S ++ F P+ E + + AF +RRKTLR +L Sbjct: 186 RAGPVGRAVFWPVPNVDSALVAFTRRAEPVAQVSREEVFAVIDAAFAQRRKTLRAALAGW 245 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E +L AG++ R E L + F RI Sbjct: 246 AGSAEAAERVLRAAGVDPKARGEALDVAAFARIAQ 280 >gi|225075613|ref|ZP_03718812.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens NRL30031/H210] gi|224953035|gb|EEG34244.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens NRL30031/H210] Length = 257 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 131/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + +IEIG G +T+ L ++ V E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQPDDIMIEIGPGLAAITEPLAK-KLNRLHVCEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF +I +I+ NLPYNI T LLF ++ Sbjct: 66 IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P+P Sbjct: 121 DDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 176 KVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGISP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVELSNYLA 255 >gi|261855877|ref|YP_003263160.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2] gi|261836346|gb|ACX96113.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2] Length = 285 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 138/270 (51%), Gaps = 19/270 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ +I + ++EIG G G LT L+ + V+E D+ Sbjct: 14 RKRFGQNFLTDEAVIARIVSAIAPKADDRLVEIGPGLGALTCQLIQ-PLTHLTVVELDRD 72 Query: 82 FFPIL----------KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 P L D SSQ ++L +++ DAL ++ E P+RI NLPYNI T Sbjct: 73 IIPKLLARCSKQKTAHDQSSQ--SKLTVLEQDALTLNLEPL-ACEGPLRIAGNLPYNIAT 129 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F+ + +T + QKEV +R+ A + YGRLS++ + +F + Sbjct: 130 PLIFHLLEQSKH---IIDMTFMLQKEVVDRLAAHPGNRDYGRLSLMVQAVAEVESLFVVP 186 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P PKV S ++ +P +P +P L++L ++ AF RRKTL+ +LK + Sbjct: 187 PTAFNPPPKVDSAIVRLVPRTHPLVPDDLKALFGELVSLAFAHRRKTLQNNLKHRLPTST 246 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 + AGI+ RAE +S+++F + ++ + Sbjct: 247 IVLAGIDPGTRAEQVSLDEFITLARLVKEQ 276 >gi|326563671|gb|EGE13923.1| dimethyladenosine transferase [Moraxella catarrhalis 103P14B1] gi|326565249|gb|EGE15434.1| dimethyladenosine transferase [Moraxella catarrhalis 12P80B1] gi|326573279|gb|EGE23247.1| dimethyladenosine transferase [Moraxella catarrhalis 101P30B1] gi|326575822|gb|EGE25745.1| dimethyladenosine transferase [Moraxella catarrhalis CO72] Length = 284 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ +I + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + GI + R E L + +F + +++ N+ Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280 >gi|113866543|ref|YP_725032.1| dimethyladenosine transferase [Ralstonia eutropha H16] gi|122947140|sp|Q0KEA7|RSMA_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113525319|emb|CAJ91664.1| dimethyladenosine transferase (rRNA methylation) [Ralstonia eutropha H16] Length = 280 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 131/274 (47%), Gaps = 24/274 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74 H + +K GQNFL+D I+ I + ++EIG G G LT LL + +V+ Sbjct: 6 HQGHVARKRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIPQMQVV 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +++D +++ + ++ RL++ DAL DF+K P+RI+ NLPYNI + LL Sbjct: 66 ELDRD-----LVERLRRRYGERLQVHAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV ER+ A+ S +GRLS++ R + D+ P Sbjct: 121 FHLMD---FADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGA 177 Query: 195 FFPSPKVTSTVIHFI------------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F P PKV S V+ I PH + C + L + AF +RRK LR +L Sbjct: 178 FNPPPKVDSAVVRMIPWPRHSDGRLRSPHAD---CDITVLGDVVTAAFSQRRKVLRNTLS 234 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L + G + RAE + + ++ + L Sbjct: 235 FLRDQVDFDAMGFDLGRRAEEVPVGEYVELARRL 268 >gi|327403715|ref|YP_004344553.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823] gi|327319223|gb|AEA43715.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823] Length = 262 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 129/255 (50%), Gaps = 10/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D + K+IAE G+ T IE+G G G LT+ L+ + V++ DQ Sbjct: 7 KKHLGQHFLKDKGVCKRIAEQFKHHQGVKTAIEVGPGMGALTEFLIQDPETNLYVMDVDQ 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + LK SQ R I+ D LK+D P ++ N PYNI +++LF I Sbjct: 67 ESIDYLKINYSQLGER--IVFADFLKIDPTTIVG-QEPFAVLGNFPYNISSQILFKCIDL 123 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + +FQKEV R+ + + YG LSVL F + HVF P PK Sbjct: 124 KDHVP---EIMGMFQKEVALRVAEKPGTKVYGILSVLLQAYYDIEYCFTVDEHVFDPPPK 180 Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + +PC + K++ + +F +RRKT+R S+K L E ++ L Sbjct: 181 VKSGVIRCTRNNREKLPCDEKLFKQVVKMSFNQRRKTIRNSIKALLPET--YEENPMLQL 238 Query: 260 RAENLSIEDFCRITN 274 R E L +E+F +TN Sbjct: 239 RPERLGVEEFIELTN 253 >gi|94309384|ref|YP_582594.1| dimethyladenosine transferase [Cupriavidus metallidurans CH34] gi|118600890|sp|Q1LRA1|RSMA_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|93353236|gb|ABF07325.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Cupriavidus metallidurans CH34] Length = 278 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 129/272 (47%), Gaps = 20/272 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74 H + +K GQNFL+D I+ I + V+EIG G G LT LL L +V+ Sbjct: 6 HQGHVARKRFGQNFLVDDGIIHGIVSAIDPQPNDIVVEIGPGLGALTDPLLERLPGMQVV 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +++D +++ + ++ +RL + DAL DF K +RI+ NLPYNI + LL Sbjct: 66 ELDRD-----LVERLRRRYGDRLVVHAGDALAFDFGKLREPGRALRIVGNLPYNISSPLL 120 Query: 135 FNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F+ + AD + QKEV ER+ A S YGRLS++ R + D+ P Sbjct: 121 FHLVDFADDV----RDQHFMLQKEVVERMVADPGSKSYGRLSIMLQVRYHMEHVLDVPPA 176 Query: 194 VFFPSPKVTSTVIHFIP--------HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 F P PKV S V+ IP +P C L + AF +RRK LR +L L Sbjct: 177 SFNPPPKVDSAVVRMIPWPRAEDGTLRSPYAACDAGVLGDVVTAAFSQRRKVLRNTLSFL 236 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + G + RAE + + ++ + I+ Sbjct: 237 RDQVDFDALGFDLTRRAEEVPVAEYVELARIV 268 >gi|309371329|emb|CBX33010.1| hypothetical protein CBG_11971 [Caenorhabditis briggsae AF16] Length = 361 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 150/293 (51%), Gaps = 28/293 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG+GPG +T+ +L Sbjct: 10 ALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGILEA 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPI----- 119 GA ++ V+E D +F P L+ ++ +R+ I DAL+ + ++K N S + Sbjct: 70 GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPWHDS 129 Query: 120 -----RIIANLPYNIGTRLLFNWISADTW-PPFWE----SLTLLFQKEVGERITAQKNSP 169 +I NLP+NI + L+ ++ ++ WE LTL FQ EV +R+ + Sbjct: 130 KLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPIACD 189 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228 R+S++ + + ++F IS F P P+V V+ F+P P + E L+K+ ++ Sbjct: 190 TRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 249 Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRIT 273 F R+K + + LK L + LL + I+ + L +E F + Sbjct: 250 VFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLA 302 >gi|296111672|ref|YP_003622054.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154] gi|295833204|gb|ADG41085.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154] Length = 295 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 143/277 (51%), Gaps = 21/277 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + KK GQNFL DL +L I + +G D VIEIG G G LT+ L A Sbjct: 14 QAILNTYGLHAKKKFGQNFLTDLTVLHGIVDIAGITDQDYVIEIGPGIGALTEQ-LARAA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E D Q +L + + N +++I D L ++ + F + ++++ANLP Sbjct: 73 KKVVAFEIDTQMVDVLSETLQPYDN-VKVINGDILDINLPEVIRAEFGEEAHVKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + + W+++ ++ Q+EV ER+ A+ + YG L+++ + +A + Sbjct: 132 YYITTPILMQLLRTNIA---WDNIVVMMQREVAERLNAEVGTKAYGVLTLIIQYFAQAEL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL-RQSLKR 243 ++S F P+P V S V+ P L+P + E L + + +F RRK+L L+ Sbjct: 189 AIEVSAASFNPAPNVDSAVVKLTP-LSPELVVAQPERLFGVIKGSFSHRRKSLWNNMLQT 247 Query: 244 LGGENL--------LHQAGIETNLRAENLSIEDFCRI 272 G E + L QA I ++RAE L ++ + Sbjct: 248 YGKEAVTKEKITKALDQANIAPSIRAERLDLKQLTAL 284 >gi|296113252|ref|YP_003627190.1| dimethyladenosine transferase [Moraxella catarrhalis RH4] gi|295920946|gb|ADG61297.1| dimethyladenosine transferase [Moraxella catarrhalis RH4] gi|326562888|gb|EGE13175.1| dimethyladenosine transferase [Moraxella catarrhalis 46P47B1] gi|326576903|gb|EGE26809.1| dimethyladenosine transferase [Moraxella catarrhalis O35E] Length = 284 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ +I + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + GI + R E L + +F + +++ N+ Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280 >gi|212278075|gb|ACJ23052.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVDNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|326570246|gb|EGE20291.1| dimethyladenosine transferase [Moraxella catarrhalis BC8] Length = 284 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ +I + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSYSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + GI + R E L + +F + +++ N+ Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280 >gi|149369569|ref|ZP_01889421.1| dimethyladenosine transferase [unidentified eubacterium SCB49] gi|149356996|gb|EDM45551.1| dimethyladenosine transferase [unidentified eubacterium SCB49] Length = 284 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 128/257 (49%), Gaps = 11/257 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D + + IAE+ VIEIG G G LT+ LL ++ ++ D Sbjct: 29 KKHLGQHFLTDEGVARDIAETLTHKGYKNVIEIGPGTGVLTKYLLEKDI-NLVAMDLDSD 87 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + +PN L+I++ D L+ D + +F + I N PYNI T+++F + Sbjct: 88 SIAYLE---AHYPNDNLQILEADFLREDLQDYFG-TEQYAITGNFPYNISTQIVFKALEN 143 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T +FQKEV RI A S YG LSVL A +F + P VF P PK Sbjct: 144 KEQVP---EFTGMFQKEVAMRICANHGSKTYGILSVLAQAFYDAEYLFTVPPTVFNPPPK 200 Query: 201 VTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S V+ + +PC L K+ + AF +RRKTLR SLK L + I Sbjct: 201 VDSGVLRLTRKASLELPCSEAFLYKVVKTAFQQRRKTLRNSLKTFEISEKLKEDTI-FGQ 259 Query: 260 RAENLSIEDFCRITNIL 276 R E LS+ F +T L Sbjct: 260 RPEQLSVAQFIALTTKL 276 >gi|312149423|gb|ADQ29494.1| dimethyladenosine transferase [Borrelia burgdorferi N40] Length = 281 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 24/286 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T++LL + E D ++ IL + + N ++I+ D LK K+ N + Sbjct: 66 LGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L KA + DI + F+P+PKV ST + IP N I E K+ + F RRK Sbjct: 176 LVQSHFKAIKILDIGENNFYPAPKVKSTTLKLIPKKNNIKNFKE-FNKLVRTVFSSRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ ++ K EN L + + R EN+S+E+F +I+N L Sbjct: 235 LKNTIINFITNKATLKENFLKEY---LDKRPENISVEEFIQISNTL 277 >gi|148244651|ref|YP_001219345.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii HA] gi|146326478|dbj|BAF61621.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii HA] Length = 254 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 132/252 (52%), Gaps = 13/252 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL+D I+ +I + ++EIG G G +T LL ++ VIE D Sbjct: 9 RKRFGQNFLIDNRIIDRIIATISPKRNDNLLEIGPGQGAITIPLLNY-VNQLNVIEIDLN 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 IL+ + H L I Q D LK D + PIRII NLPYNI + +LF+ I Sbjct: 68 LISILESLEYSH---LIIYQGDVLKFDLNI---LPMPIRIIGNLPYNISSSILFHLIENL 121 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + +T++ QKEV ER+ A S YGRLSV+ M+F + P F P P+V Sbjct: 122 DK---IQDITVMLQKEVVERMGANSGSKVYGRLSVMMQTFFNINMIFTVPPESFNPVPRV 178 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S +++ P P ++ +K+ + AF +RRK LR SLK + + Q I+ + RA Sbjct: 179 DSAIVYLKPLAQPKTKNIKVFEKVVKLAFSQRRKMLRNSLKYVLTQ---KQTDIDLSRRA 235 Query: 262 ENLSIEDFCRIT 273 E L+++DF +T Sbjct: 236 EMLTVDDFITLT 247 >gi|147919487|ref|YP_686773.1| putative dimethyladenosine rRNA methyltransferase [uncultured methanogenic archaeon RC-I] gi|110622169|emb|CAJ37447.1| putative dimethyladenosine rRNA methyltransferase [uncultured methanogenic archaeon RC-I] Length = 260 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 140/267 (52%), Gaps = 27/267 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P K Q+FL+D +L +I +++ V+EIGAGPGNLT+ LL AR V IE Sbjct: 3 LAPDKRKDQHFLIDQAVLHRIVDAAALSSDEVVLEIGAGPGNLTR-LLAQKARHVYTIEM 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++F L+ + + + +I +ALKV+F +F +++ANLPY+I + + F + Sbjct: 62 DRRFAEALE--ADFQGSNVTVIHGNALKVEFPRF------DKVVANLPYSISSDVTFKLL 113 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S +P ++ L++Q+E +R+ A+ Y RLSV ++F++S F P Sbjct: 114 S---YP--FKFAILMYQREFAQRMAAKVGEEDYSRLSVTVQHFADVKLLFNVSRRAFNPQ 168 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLH----QA 253 P+V STV+ P E L K+ AF RRK L+++L L G +++ Q+ Sbjct: 169 PEVESTVVKLTPRPAGYTVADEELFMKLVTAAFAGRRKKLKKAL--LNGAHMMGLKDPQS 226 Query: 254 GIET------NLRAENLSIEDFCRITN 274 I + RAE +S E+F + N Sbjct: 227 VISALPADVLDRRAEQVSPEEFALLAN 253 >gi|320353106|ref|YP_004194445.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032] gi|320121608|gb|ADW17154.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032] Length = 304 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 137/286 (47%), Gaps = 30/286 (10%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + P K +GQNFL+ ++I + +G VIE+G G G LT+ L A Sbjct: 7 KQLLKRQGLAPHKKLGQNFLVHERTPRRIVDLAGLQPDDQVIEVGVGLGALTRPLAAAVA 66 Query: 71 RKVIVIEKDQ---QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 KVI +E D +F +D+ P +E++ D LKVDF ++I+ANLPY Sbjct: 67 -KVIGLEADSGIIRFHQEQQDL----PANVELVHADVLKVDFAPLVEPGKRLKIVANLPY 121 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + LF I F ++ QKEV +R+ AQ S YG +VL + + Sbjct: 122 SISSPFLFRLIDQAELMDFA---VVMLQKEVAQRLMAQPGSKEYGAPTVLLAACAEVRPL 178 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL--------KKITQEAFGKRRKTLRQ 239 ++P F P PKV S VI +P P ++ L +I AFG+RRKTL Sbjct: 179 LAVNPAEFHPRPKVDSLVIRI--DFHPRPKRVQDLGAFDRKLFTRIVHAAFGQRRKTLLN 236 Query: 240 SL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L K E +L AG+ + RAE LS+E F +T L+ Sbjct: 237 GLAAARVLDEKEKLAEAIL-AAGVSPSDRAETLSLEQFVTLTRELS 281 >gi|268560678|ref|XP_002646265.1| Hypothetical protein CBG11970 [Caenorhabditis briggsae] Length = 358 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 150/293 (51%), Gaps = 28/293 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG+GPG +T+ +L Sbjct: 8 ALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGILEA 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPI----- 119 GA ++ V+E D +F P L+ ++ +R+ I DAL+ + ++K N S + Sbjct: 68 GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPWHDS 127 Query: 120 -----RIIANLPYNIGTRLLFNWISADTW-PPFWE----SLTLLFQKEVGERITAQKNSP 169 +I NLP+NI + L+ ++ ++ WE LTL FQ EV +R+ + Sbjct: 128 KLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPIACD 187 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228 R+S++ + + ++F IS F P P+V V+ F+P P + E L+K+ ++ Sbjct: 188 TRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 247 Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRIT 273 F R+K + + LK L + LL + I+ + L +E F + Sbjct: 248 VFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLA 300 >gi|319796617|ref|YP_004158257.1| dimethyladenosine transferase [Variovorax paradoxus EPS] gi|315599080|gb|ADU40146.1| dimethyladenosine transferase [Variovorax paradoxus EPS] Length = 254 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 129/265 (48%), Gaps = 28/265 (10%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78 I +K GQ+FL D I+ I G ++EIG G LTQ L+ LG VI +++ Sbjct: 4 IARKRFGQHFLSDGGIIDAIVHEIAPQPGDAMVEIGPGLAALTQPLVERLGRLTVIELDR 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNIGTRLLFN 136 D L +HP LE+I+ D LKVDF + ++P +R++ NLPYNI T +LF+ Sbjct: 64 D------LAKRLREHPQ-LEVIESDVLKVDFAELAAKAAPKPLRVVGNLPYNISTPILFH 116 Query: 137 WISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + F +T + QKEV +R+ A+ + Y RLSV+ WR + + P Sbjct: 117 LLG------FAHLITDQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYDMQNVLFVPPE 170 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P P+V S V+ +P P L +I Q AF +RRK LR +L + L Sbjct: 171 SFDPPPRVDSAVVRMVPLAQPPVVDAARLGEIVQVAFSQRRKILRHTLGK-----WLETH 225 Query: 254 GIETNL----RAENLSIEDFCRITN 274 G E RAE + + ++ + Sbjct: 226 GFEGEFDPQRRAEEVPVAEYVALAQ 250 >gi|27151609|sp|Q9PBJ6|RSMA_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 265 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 125/257 (48%), Gaps = 10/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+FL+D + +I + ++EIG G G +T LL + IE D+ Sbjct: 11 KKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPLLKCCG-SLTAIELDRD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISA 140 L ++ +L+II D L VD + +R++ NLPYNI + +LF+ + Sbjct: 70 LIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGNLPYNISSPILFHVLQQ 128 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T MF + P F P PK Sbjct: 129 AA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPPK 185 Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V S + +P +P + K+ I + AFG+RRKTLR SL + AGI T Sbjct: 186 VNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 244 Query: 258 NLRAENLSIEDFCRITN 274 N RAE L + +F + N Sbjct: 245 NARAEQLEVTEFIALAN 261 >gi|313668821|ref|YP_004049105.1| dimethyladenosine transferase [Neisseria lactamica ST-640] gi|313006283|emb|CBN87746.1| putative dimethyladenosine transferase [Neisseria lactamica 020-06] Length = 259 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 133/264 (50%), Gaps = 21/264 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L A+K+ V+E Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPL----AKKLNCLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW- 137 D+ LK + ++L I + D L+ DF +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 138 -ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ D + + QKEV ER+ A S YGRL V+ + ++ D+ P F Sbjct: 118 EVADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFD 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+PKV S VI IP + I E K+ + AF +RRKT+R +LK L + L G Sbjct: 173 PAPKVDSAVIRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVG 232 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 I RAE+++ E + ++N L D Sbjct: 233 ISPQDRAEHIAPEKYIALSNYLAD 256 >gi|163786670|ref|ZP_02181118.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1] gi|159878530|gb|EDP72586.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1] Length = 262 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 97/268 (36%), Positives = 141/268 (52%), Gaps = 13/268 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKV 73 +H ++ KK++GQ+FL D +I + IA+S SL+G V+EIG G G LT+ LL Sbjct: 3 NHNQVKAKKHLGQHFLTDESIAQDIADSL-SLEGYKDVLEIGPGMGVLTKYLLK-KETTT 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D + LK+ +R I + D LK D F P II N PYNI +++ Sbjct: 61 HVIEIDTESVEYLKNNYLNLADR--IYEKDFLKYDLNLIFK-DKPFAIIGNFPYNISSQI 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF + P + + FQKEV +RI +++ S YG LSVLT A +F + P Sbjct: 118 LFKTLELRHQIPEFSGM---FQKEVAKRICSKEGSKVYGILSVLTQAFYNADYLFTVPPT 174 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLH 251 VF P PKV S V+ N +PC + ++ + F +RRKTLR SLK +NL Sbjct: 175 VFNPPPKVDSGVLLLKRKENFKLPCDEKLFFRVVKTGFQQRRKTLRNSLKTFNLSDNL-- 232 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 +A R E LS+ F +T+++ ++ Sbjct: 233 KANTIFGQRPEQLSVSKFIELTSLIEND 260 >gi|326560243|gb|EGE10631.1| dimethyladenosine transferase [Moraxella catarrhalis 7169] gi|326566439|gb|EGE16589.1| dimethyladenosine transferase [Moraxella catarrhalis BC1] gi|326570983|gb|EGE21007.1| dimethyladenosine transferase [Moraxella catarrhalis BC7] Length = 284 Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ ++ + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQVVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + GI + R E L + +F + +++ N+ Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280 >gi|73540206|ref|YP_294726.1| dimethyladenosine transferase [Ralstonia eutropha JMP134] gi|119365051|sp|Q475Q1|RSMA_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72117619|gb|AAZ59882.1| dimethyladenosine transferase [Ralstonia eutropha JMP134] Length = 278 Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 133/274 (48%), Gaps = 24/274 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74 H + +K GQNFL+D +I+ I + L ++EIG G G LT LL + +V+ Sbjct: 6 HQGHVARKRFGQNFLVDDSIIHGIVNAINPLADDVLVEIGPGLGALTDPLLERVPQMQVV 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +++D +++ + ++ +RL++ DAL DF + P+RI+ NLPYNI + LL Sbjct: 66 ELDRD-----LVERLRRRYGDRLQVHAGDALAFDFGRLAVPGRPLRIVGNLPYNISSPLL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV +R+ A+ S +GRLS++ R + D+ P Sbjct: 121 FHLMD---YADHVHDQHFMLQKEVVDRMVAEPGSKAFGRLSIMLQVRYHMEHVLDVPPGS 177 Query: 195 FFPSPKVTSTVIHFI------------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F P PKV S V+ I PH + C + L + AF +RRK LR +L Sbjct: 178 FNPPPKVDSAVVRMIPWPRTESGRLRSPHAD---CDITVLGDLVTAAFSQRRKVLRNTLS 234 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L + G + RAE + + ++ + L Sbjct: 235 FLRDQIDFEAIGFDLGRRAEEVPVGEYVELARRL 268 >gi|33598179|ref|NP_885822.1| dimethyladenosine transferase [Bordetella parapertussis 12822] gi|62900579|sp|Q7W4J6|RSMA_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33566737|emb|CAE38949.1| dimethyladenosine transferase [Bordetella parapertussis] Length = 265 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 15/252 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQ+FL D ++++ I + G V+EIG G LT+ LL + + I++D Sbjct: 7 RKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRD- 65 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + Q+P RL +++ DAL VDF +F +R++ NLPYNI + LLF+ + Sbjct: 66 ----LAARLRRQYPAERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLMG 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A + Q+EV +R+ A+ S Y RLSV+ R + M+FD++P F P P Sbjct: 119 AAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEMLFDVAPEAFDPPP 175 Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 +V S V+ +P P + + + AF +RRK LR+ L + GI Sbjct: 176 RVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIAP 235 Query: 258 NLRAENLSIEDF 269 RAE + + F Sbjct: 236 TARAEEVGVAQF 247 >gi|28199096|ref|NP_779410.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1] gi|32129656|sp|Q87C85|RSMA_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28057194|gb|AAO29059.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1] Length = 265 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 125/257 (48%), Gaps = 10/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+FL+D + +I + ++EIG G G +T LL + IE D+ Sbjct: 11 KKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLKCCG-SLTAIELDRD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISA 140 L ++ +L+II D L VD + +R++ NLPYNI + +LF+ + Sbjct: 70 LIAPLTAAATPI-GKLDIIHRDVLTVDLSILAKQGNKKLRLVGNLPYNISSPILFHVLQQ 128 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T MF + P F P PK Sbjct: 129 AA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPPK 185 Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V S + +P +P + K+ I + AFG+RRKTLR SL + AGI T Sbjct: 186 VNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 244 Query: 258 NLRAENLSIEDFCRITN 274 N RAE L + +F + N Sbjct: 245 NARAEQLEVTEFIALAN 261 >gi|224532232|ref|ZP_03672864.1| dimethyladenosine transferase [Borrelia valaisiana VS116] gi|224511697|gb|EEF82103.1| dimethyladenosine transferase [Borrelia valaisiana VS116] Length = 284 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 144/273 (52%), Gaps = 15/273 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S+K L KI P+K GQN+L++ NI +KI ES + + EIG G G +T +LL Sbjct: 20 SIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLGAMTDILLK- 78 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPY 127 + E D ++ IL + + N ++I+ D LK K+ N + I +I +NLPY Sbjct: 79 KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYTNENKNIDKIFSNLPY 133 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI ++++ I + F + + QKE+ +RITA+ NS +Y +VL + Sbjct: 134 NIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQSHFTVIKI 189 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGG 246 DI H F+P PKV ST + IP N I E K+ + F RRK L+ + + + Sbjct: 190 IDIGEHNFYPVPKVRSTTLKLIPKENNIKDFKE-FNKLIRTVFSNRRKKLKNTIINFIAN 248 Query: 247 ENLLHQAGIETNL--RAENLSIEDFCRITNILT 277 ++ L + ++ L R EN+S+E+F +I+N LT Sbjct: 249 KDTLRENFLKEYLDKRPENISVEEFIQISNTLT 281 >gi|309775087|ref|ZP_07670100.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 3_1_53] gi|308917201|gb|EFP62928.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 3_1_53] Length = 285 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 140/278 (50%), Gaps = 18/278 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + + KK GQNFL++ I+ KIA + + V EIG G G LTQ L A Sbjct: 12 KEILETHGMFAKKNYGQNFLIESGIVDKIARHAVISNHCVVFEIGPGIGALTQYLCEY-A 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +KVI E D++ +L D ++ N E++ D L+ D E + I + ANLP Sbjct: 71 KKVISFEIDERLPEVLADTLQEYDN-FELVMTDFLETDLNHWCEPYKKEGCDIVVAANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +LF ++ P +++T++ QKEV +R A N+ Y LS++T +R + Sbjct: 130 YYITTPILFKIF--ESGAPI-DAITVMMQKEVADRFAATVNTKDYNALSIITQYRCEVLP 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR-------Q 239 + + +VF P P V S V+ F P E + + F +RRKT+ Q Sbjct: 187 VMKVPKNVFLPKPNVDSAVLQFRFKETPSDIDEELFFPLVKACFRQRRKTILNNYGEYIQ 246 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +R E L ++GI RAE++++E+F R+ + T Sbjct: 247 DKQRARDE--LEKSGIACARRAESVTLEEFIRLYEVHT 282 >gi|328948142|ref|YP_004365479.1| ribosomal RNA small subunit methyltransferase A [Treponema succinifaciens DSM 2489] gi|328448466|gb|AEB14182.1| Ribosomal RNA small subunit methyltransferase A [Treponema succinifaciens DSM 2489] Length = 291 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 12/281 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N LK L + +K GQNF+++ + +KI V EIG G G +T++ Sbjct: 7 NSPSELKAFLEQSGMAMQKKFGQNFMINQSAREKIFSLLELKKDELVWEIGPGLGCMTEL 66 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFF-NISSPIRI 121 +L+ GA + V E D+ F ILK Q + +II+ D LK + F+ N P ++ Sbjct: 67 ILSSGAN-LEVFEIDRGFISILKQFFEQQEKSEQFKIIEGDVLKNWKKAFYENPQKPAKL 125 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI + + I+ + ++ QKEV +R+ A+K + +Y SVL W Sbjct: 126 FGNLPYNIAATFIADTITENV---VFKKCVFTVQKEVAQRMAAKKGTENYSAFSVLCQWG 182 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F+P P V+S + NP K+ F RRKT++ ++ Sbjct: 183 YNVKLDLVLGSSSFWPRPTVSSQAVVMTKKENPFSGNSALFVKVVHALFAARRKTIQNNI 242 Query: 242 KRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K L E + GI RAENL++EDF +I+++L+ Sbjct: 243 KPLLPENISAEEFFEKCGISKTERAENLAVEDFIKISDMLS 283 >gi|94269962|ref|ZP_01291617.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] gi|93450994|gb|EAT01969.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] Length = 288 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 24/281 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ILS +K+ P K GQNFL+ + ++I E + TV+E+G G G LT+ L A Sbjct: 7 QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 66 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNI 129 KVI +E D + S + P +E+ D L+ D+ I+IIANLPY+I Sbjct: 67 -KVIGLELDAGIVNYHRQ-SGELPANVELRHQDLLRADYPAMAAEQGGKIKIIANLPYSI 124 Query: 130 GTRLLFNWI---SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 LLF + A W + L+ QKEV +R+ A S YG L+VL G Sbjct: 125 TNPLLFRLLVQRRALDW------VVLMIQKEVADRLVAAVGSKEYGVLTVLLGACATVER 178 Query: 187 MFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + P FFP PKV S VI PH+ P L+++ AF +RRKTL SL Sbjct: 179 LLAVGPGNFFPRPKVDSVVIRLDFRNFPHV-PDDAEFGRLRRVVDAAFNQRRKTLLNSLS 237 Query: 243 ----RLGGENLLHQAG---IETNLRAENLSIEDFCRITNIL 276 L E + +++ LRAE L+ DF R++ L Sbjct: 238 AGLPELDRETIAAALAAAELDSGLRAERLTTADFRRLSAKL 278 >gi|307091952|gb|ADN28311.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/124 (44%), Positives = 87/124 (70%), Gaps = 1/124 (0%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 LDLN+ +IA ++GSL+ T++EIG GPG LT+ LL LGAR+VI +E+D + L++++ Sbjct: 1 LDLNLTARIARAAGSLETHTIVEIGPGPGGLTRALLALGARRVIAVERDDRAIVALQEVA 60 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +++P RL+I+ DAL+ D +I+ANLPYN T LL W+SA+ WPP+++++ Sbjct: 61 ARYPGRLDIVAADALEFDPRPMLG-GDRAKIVANLPYNTATVLLTGWLSAEPWPPWYDAM 119 Query: 151 TLLF 154 L+F Sbjct: 120 VLMF 123 >gi|332665266|ref|YP_004448054.1| ribosomal RNA small subunit methyltransferase A [Haliscomenobacter hydrossis DSM 1100] gi|332334080|gb|AEE51181.1| Ribosomal RNA small subunit methyltransferase A [Haliscomenobacter hydrossis DSM 1100] Length = 260 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 24/267 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK GQ+FL I ++IA S + + V+E+G G G LT+ LL A + V+E D Sbjct: 4 KKSFGQHFLNREEIAERIANSLTTNTELAPLVLEVGPGKGMLTKYLLAKTA-SLKVVEAD 62 Query: 80 -------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 Q+++P L+D II D LKVD FN +I N PYNI ++ Sbjct: 63 VDMVNYLQKYYPQLQD---------NIISGDFLKVDLAAVFN-GQAFGLIGNFPYNISSQ 112 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F+ I + P+ + +FQKE+ +RI A+ YG +SVLT + +F++ Sbjct: 113 IVFHMIK---FRPYVPEMVGMFQKEMADRIIAKPGGKDYGVISVLTQAYYEGKTLFNVDK 169 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S VI + N C E+L +++ + +F +RRK LR +LK L E++ Sbjct: 170 SCFSPPPKVQSAVIRLLRKENQDLGCDEALFRQVVKTSFNQRRKMLRNTLKPLFAESVEI 229 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 + R E L++ DF IT L + Sbjct: 230 LEDVFYQQRPEQLALNDFIEITRKLQN 256 >gi|282880957|ref|ZP_06289648.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1] gi|281305180|gb|EFA97249.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1] Length = 270 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 15/260 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DLNI K+IA++ + I V+E+G G G +TQ L+ R++ +E D+ Sbjct: 6 PKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEVGPGMGVMTQYLVE-KPREIKAVEIDR 64 Query: 81 QFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + L H +L+ II D L++D +K F P + N PY+I +++ F + Sbjct: 65 ESVAFL----HTHFPKLQGNIIGQDFLRMDLQKVFE-GRPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV RI ++ YG LSVL +F + +VF P Sbjct: 120 ENKELIP---CCTGMIQREVALRIASEPGHKAYGILSVLIQAWYDVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL-GGENLLHQ--AG 254 PKV S VI + C E L K++ + F +RRK LR SL++L G N + AG Sbjct: 177 PKVKSAVIRMTRNATTDLGCNEQLFKRLVKAVFNQRRKMLRVSLRQLFTGNNASAEFYAG 236 Query: 255 IETNLRAENLSIEDFCRITN 274 +R E LSI+ F +TN Sbjct: 237 ELMTMRPEQLSIQQFVDLTN 256 >gi|332291630|ref|YP_004430239.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5] gi|332169716|gb|AEE18971.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5] Length = 288 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 18/273 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIE 77 I KK++GQ+FL D ++ K IA++ + V+EIG G G LT+ LL V+ ++ Sbjct: 24 IKAKKHLGQHFLGDESVAKDIADTLTYVGYSHVLEIGPGTGVLTKYLLEKPTHLSVMDLD 83 Query: 78 KD-----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 ++ Q F + ++ +H +++ D L+ D + + + I N PYNI T+ Sbjct: 84 RESIAYLQSAFTLEHKLNDEH---FTVLEADFLRYDLDTIYP-GEQLAITGNFPYNISTQ 139 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F I P T +FQKEV RI A S YG +SVL A +F + P Sbjct: 140 IVFKTIEHKERIP---EFTGMFQKEVAARICADHGSKTYGIMSVLVQAFFDAEYLFTVPP 196 Query: 193 HVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S V+ I C E L K+ + AF +RRKTLR SLK +G + Sbjct: 197 TVFIPPPKVDSGVLRLKRKEGYQDIGCTQEMLFKVVKMAFQQRRKTLRNSLKGMGLSDEF 256 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + I T R E +S+++F +T +T +DIA Sbjct: 257 REREILTR-RPEQISVQEFIALTAAIT--EDIA 286 >gi|261400380|ref|ZP_05986505.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970] gi|269209816|gb|EEZ76271.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970] Length = 259 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/264 (34%), Positives = 132/264 (50%), Gaps = 21/264 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L A+K+ V+E Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPL----AKKLNCLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW- 137 D+ LK + ++L I + D L+ DF +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 138 -ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ D + + QKEV ER+ A S YGRL V+ + ++ D+ P F Sbjct: 118 EVADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFD 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+PKV S V+ IP + I E K+ + AF +RRKT+R +LK L + L G Sbjct: 173 PAPKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVG 232 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 I RAE++ E + ++N L D Sbjct: 233 ISPQDRAEHIEPEKYVALSNYLAD 256 >gi|242279077|ref|YP_002991206.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638] gi|259494247|sp|C6BSW3|RSMA_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|242121971|gb|ACS79667.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638] Length = 262 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 132/249 (53%), Gaps = 16/249 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI +KI +S + ++IEIG G G LT+ +L G + ++EKD+ Sbjct: 8 KKSLGQNFLQDANIARKIVDSLKITENDSIIEIGPGQGALTKFILEAGPESLTLVEKDRD 67 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 P L+ +++P R+E+ +DALK D+ + +I+ NLPYN+ ++++++ I+A Sbjct: 68 LAPALE---AEYPEARVEL--EDALKFDWAG-LDPDRNWKIVGNLPYNVASKIMWD-IAA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + Q EV +R+T+ S YG +SV + +F + P VF P PK Sbjct: 121 QC----NATCVFMVQHEVAQRVTSGPGSKKYGAISVWIQSFCRTDYLFKVPPTVFKPKPK 176 Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---GIE 256 V S VI F P P +E L K+ + F RRK L + LK + ++ A G+ Sbjct: 177 VDSAVIKFFPLPEEEKPSDIEGLAKLVKYCFQYRRKQLGKILKSFISDAVIQWAEKEGVS 236 Query: 257 TNLRAENLS 265 R E LS Sbjct: 237 LTDRPEALS 245 >gi|78187147|ref|YP_375190.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273] gi|119365044|sp|Q3B3D4|RSMA_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78167049|gb|ABB24147.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273] Length = 273 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 130/257 (50%), Gaps = 15/257 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +I KK +GQNFL D NI +KI +SG+ ++EIG G G LT+ +L + V Sbjct: 8 HTEIAVKKKLGQNFLTDRNITRKIVAASGAGSQDRILEIGPGFGALTREILEVCP-AFTV 66 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +EKD+ I ++P L++I+ D L +D E+ P+R++ N+PY+I T +LF Sbjct: 67 VEKDRALAAF---IRQEYPQ-LQLIEADFLDIDLERL-AAGGPLRVLGNIPYSITTPILF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S TL+ Q EV R+ A ++ YG L+V +F + VF Sbjct: 122 KLLENRRS---ITSATLMMQHEVAARLVATPSTKEYGILAVQLQTFCDVRYLFKVGRKVF 178 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P V S VI +P N ++ + + AF +RRKTL +LK + + QA Sbjct: 179 RPQPNVDSAVISMVPKKNVAVEDAQAFSRFVRTAFHQRRKTLYNNLK----DAYMLQAVD 234 Query: 256 ETN--LRAENLSIEDFC 270 E LRAE LSIE Sbjct: 235 EGTLKLRAEALSIEKLA 251 >gi|213420100|ref|ZP_03353166.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 168 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 5/167 (2%) Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ Sbjct: 2 PLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVM 58 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRK 235 + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRK Sbjct: 59 AQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRK 118 Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 T+R SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 119 TIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 165 >gi|261749284|ref|YP_003256969.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497376|gb|ACX83826.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 257 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/251 (37%), Positives = 134/251 (53%), Gaps = 8/251 (3%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K Q FL D NI KKI ++ + TV+EIG G G LT+ LLT KV +IE D++ Sbjct: 8 KKFDQYFLKDKNIAKKIVKNLSFQNYNTVVEIGPGLGILTRYLLT-PWHKVFLIEIDKKL 66 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ S N +II D LK + E+ N+ + II N PY I +++LF+ + + Sbjct: 67 ILFLRKNFSVSKN--QIIHKDFLKWNPEEM-NLKN-FAIIGNFPYRISSQILFHILRYNQ 122 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + P +FQKEV ERIT+ + + YG LSVL + +F ++ HVFFP P V Sbjct: 123 YIP---ECIGMFQKEVAERITSHEGNKTYGILSVLVQTFYEVKYLFTVNKHVFFPIPNVK 179 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S VI I C + L + + AF +RRKTL+ +L+ E + N RAE Sbjct: 180 SAVISLKRKERKIFCNKDLLFQCVKIAFNQRRKTLKNALQYFIKEIPNYYNLPFLNKRAE 239 Query: 263 NLSIEDFCRIT 273 LS++DF ++T Sbjct: 240 QLSVKDFLQLT 250 >gi|95930212|ref|ZP_01312950.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684] gi|95133675|gb|EAT15336.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684] Length = 263 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 17/266 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKD 79 P+K GQNFL D N++ ++ V+EIG G G LT QM+ + + +I I++D Sbjct: 6 PRKRFGQNFLKDKNVIAATIAAAELTGDDHVLEIGPGQGALTDQMIGRVASLDIIEIDRD 65 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 F + QH L + DAL++D+ + P +++ANLPYNI +++LF I Sbjct: 66 LATF--FQARPEQH---LTVHVGDALRLDWSAIL-LDPPYKLVANLPYNISSQILFKMIE 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 E + L+FQKEVG+R+ A+ +S YG L+VL + + + P FFP P Sbjct: 120 HRH---LIERMVLMFQKEVGDRLRAEPSSKDYGALTVLCQLWFDVSRVALVPPTAFFPQP 176 Query: 200 KVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252 KV S V+ F P + ++ + +F +RRKTLR L G E + + Sbjct: 177 KVMSEVLCFKQREQPRAQVDDPAFFTRVVKASFAQRRKTLRNCLVAAGFTAEQLEKVTAE 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 G++ R E +IE+F ++ + L + Sbjct: 237 TGLDFGRRGETFTIEEFAQLAHGLQN 262 >gi|325203784|gb|ADY99237.1| dimethyladenosine transferase [Neisseria meningitidis M01-240355] Length = 259 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV +R+ A S YGRL V+ + ++ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L + L AGI Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAAGINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|26554486|ref|NP_758420.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2] gi|33516937|sp|Q8EU92|RSMA_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|26454496|dbj|BAC44824.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2] Length = 272 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 141/259 (54%), Gaps = 14/259 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + MGQNFL++ NI KKI +S V+EIG G G LT+++L+ + + V+E Sbjct: 17 KFFASRKMGQNFLINENIKKKIVDSLEIKPDDHVLEIGPGFGALTKIVLS-QTKNLTVVE 75 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++ LK Q L II D LK DF++F N + +II+NLPY+I ++++F Sbjct: 76 LDKRLVEFLK----QEYKELRIINIDVLKFDFKEF-NKDTQYKIISNLPYSISSKIIFKI 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F +S+ L+ QKE+ +RITA+ + Y +VL ++ +FD+S + FFP Sbjct: 131 LK---YANFSQSV-LMVQKEMADRITAKVGTKKYNNFTVLLRITSEIKKLFDVSNNCFFP 186 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLHQA 253 P+V STVI F + E L+ + F ++RKT+ +LK + E + ++ Sbjct: 187 KPEVDSTVISFERKKDFDFTNFEKLESFLLKCFSQKRKTIFNNLKNYFPKQKIEEVFNKH 246 Query: 254 GIETNLRAENLSIEDFCRI 272 I R EN+ E + ++ Sbjct: 247 SIIPTTRPENIKEELYLKM 265 >gi|150024182|ref|YP_001295008.1| dimethyladenosine transferase [Flavobacterium psychrophilum JIP02/86] gi|166221664|sp|A6GVR5|RSMA_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149770723|emb|CAL42187.1| Dimethyladenosine transferase [Flavobacterium psychrophilum JIP02/86] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/263 (36%), Positives = 137/263 (52%), Gaps = 29/263 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKV--IVIEK 78 KK++GQ+FL D +I K IA++ +L+G V+EIG G G LT+ LL A++V VIE Sbjct: 7 KKHLGQHFLKDESIAKDIADTL-NLEGYDNVLEIGPGMGVLTKYLL---AKEVTTYVIEI 62 Query: 79 D-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D Q +P LKD +II D LK + + F II N PYNI T Sbjct: 63 DTESVTYLDQNYPKLKD---------KIISKDFLKYNINEIFE-GKQFAIIGNFPYNIST 112 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F + P + + FQKEV +RI +K + YG LSVL A +F + Sbjct: 113 QIVFRALEYRNQIPEFAGM---FQKEVAQRICEKKGTKAYGILSVLVQAFYDAEYLFTVD 169 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S V+ + +PC + + + AF +RRKTLR SLK L ++L Sbjct: 170 ETVFIPPPKVKSGVLRLRRKKDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLNLSDIL 229 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 + + NLR E L ++ F +T Sbjct: 230 REDEV-FNLRPEQLDVQQFIELT 251 >gi|319638521|ref|ZP_07993283.1| dimethyladenosine transferase [Neisseria mucosa C102] gi|317400270|gb|EFV80929.1| dimethyladenosine transferase [Neisseria mucosa C102] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 132/262 (50%), Gaps = 19/262 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL D I+ I + VIEIG G +T+ L L V I++D Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAKKLNCLHVCEIDRD- 65 Query: 81 QFFPILKDISS-QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-- 137 I++ + + ++L I + D L+ DF +I +I+ NLPYNI T LLF Sbjct: 66 ----IVRRLKTLPFADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSE 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ D + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P Sbjct: 119 VADDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDP 173 Query: 198 SPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 174 APKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELADDDDLQAVGI 233 Query: 256 ETNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 234 NPQDRAEHIAAEKYVELSNYLV 255 >gi|255535076|ref|YP_003095447.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10] gi|255341272|gb|ACU07385.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 130/256 (50%), Gaps = 16/256 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL+D NI KKI +S V+E+G G G LT+ LL +V V E D+ Sbjct: 6 KKHLGQHFLIDENIAKKIVDSLSYSQYTQVLEVGPGMGVLTKYLLE-KETEVFVAEIDRD 64 Query: 82 FFPILKDISSQHPNRLEI--IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 LK+ H +LE DD LK+D + F + +I N PYNI +++LF I Sbjct: 65 SVAYLKN----HFPKLEARHFSDDFLKIDIAESF--GDQVAVIGNFPYNISSQILFKIID 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + +FQKEV ER A + YG LSVL T +F + +VF P P Sbjct: 119 FYDRVP---EMVGMFQKEVAERTAAVPRTKDYGILSVLVQALYDVTYLFTVHENVFNPPP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIET 257 KV S VI + E L KKI + FG+RRK L SLK L E + + +E Sbjct: 176 KVKSGVIRLTRNPKEGLAGNEVLFKKIVKAGFGQRRKKLSNSLKVLEIPEAMQNHPFLEK 235 Query: 258 NLRAENLSIEDFCRIT 273 RAE LS++DF T Sbjct: 236 --RAEELSVQDFISFT 249 >gi|227537514|ref|ZP_03967563.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33300] gi|227242651|gb|EEI92666.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 130/255 (50%), Gaps = 10/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D N +KI ++ G + V+E+G G G L+ LL + +I+ D Sbjct: 7 KKHLGQHFLNDKNAAQKIVDALDPKLGFSHVLEVGPGMGVLSDFLLQKPEYQTYLIDVDD 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L D + +RL I D L +DF K+F + +I N PYNI +++LF + Sbjct: 67 ESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKILDE 122 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 +T +FQKEV ER TA+ S YG LSV +F + F P PK Sbjct: 123 RQR---VVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTPPPK 179 Query: 201 VTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L ++ + F +RRKTLR SL + ++ + + L Sbjct: 180 VLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPL-YEL 238 Query: 260 RAENLSIEDFCRITN 274 RAE LS+EDF ++TN Sbjct: 239 RAERLSVEDFVQLTN 253 >gi|213613183|ref|ZP_03371009.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 226 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 124/244 (50%), Gaps = 26/244 (10%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116 + +G R K+ VIE D+ L+ HP +L I Q DA+ ++F E + Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222 Query: 235 KTLR 238 KT+R Sbjct: 223 KTIR 226 >gi|124005897|ref|ZP_01690735.1| dimethyladenosine transferase [Microscilla marina ATCC 23134] gi|123988580|gb|EAY28221.1| dimethyladenosine transferase [Microscilla marina ATCC 23134] Length = 258 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 130/258 (50%), Gaps = 11/258 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 PKK++GQ+FL DL+I ++I +G T++EIGAG G LT L+ + +IE D Sbjct: 4 PKKHLGQHFLTDLSIAERIVNQVQQHNGYKTIVEIGAGTGVLTDFLVKSDNFQTHIIEID 63 Query: 80 QQFFPILKDISSQHPNRLEII-QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + L +P + I + D L +D F S I II N PYNI +++ F + Sbjct: 64 TESVEYL---HKHYPTLVPYITEGDFLNIDLGALFKQQS-IGIIGNFPYNISSQIFFKVL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV ERI AQ S YG LSVL + F + P VF P Sbjct: 120 DHRDQ---VQEVVCMLQKEVAERIAAQPGSKTYGILSVLLQAYYHISYDFTVPPDVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C + K+I ++ F RRKTLR +LK + + L + Sbjct: 177 PKVYSGVISLQRNKVKKLDCDEKLFKRIVKQGFNNRRKTLRNALKSIQLPDTLKPNEM-L 235 Query: 258 NLRAENLSIEDFCRITNI 275 N RAE LS+ F +T + Sbjct: 236 NKRAEQLSVAHFVELTQL 253 >gi|300770912|ref|ZP_07080789.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762185|gb|EFK59004.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 130/255 (50%), Gaps = 10/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D N +KI ++ G + V+E+G G G L+ LL + +I+ D Sbjct: 7 KKHLGQHFLNDKNAAQKIVDALDPKLGFSQVLEVGPGMGVLSDFLLQKPEYQTYLIDVDD 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L D + +RL I D L +DF K+F + +I N PYNI +++LF + Sbjct: 67 ESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKILDE 122 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 +T +FQKEV ER TA+ S YG LSV +F + F P PK Sbjct: 123 RQR---VVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTPPPK 179 Query: 201 VTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + C E L ++ + F +RRKTLR SL + ++ + + L Sbjct: 180 VLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPL-YEL 238 Query: 260 RAENLSIEDFCRITN 274 RAE LS+EDF ++TN Sbjct: 239 RAERLSVEDFVQLTN 253 >gi|313886609|ref|ZP_07820322.1| dimethyladenosine transferase [Porphyromonas asaccharolytica PR426713P-I] gi|332300878|ref|YP_004442799.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas asaccharolytica DSM 20707] gi|312923965|gb|EFR34761.1| dimethyladenosine transferase [Porphyromonas asaccharolytica PR426713P-I] gi|332177941|gb|AEE13631.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas asaccharolytica DSM 20707] Length = 271 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 125/257 (48%), Gaps = 11/257 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KKY+GQ+FL D ++IA+S G ++E+G G G LTQ LL G + VI+ D + Sbjct: 7 KKYLGQHFLTDHGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDIDHE 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLFNWIS 139 L Q II+ D LK+ E+ P +I N PYNI +++ F + Sbjct: 66 SIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADMPFVVIGNYPYNISSQIFFRILE 125 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P ++ + Q EV +R+ A YG LSVL +F +S F P P Sbjct: 126 LRERIP---AVAGMLQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFNPPP 182 Query: 200 KVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 KV V+ I N +PC + K++ + AFG+RRK LR +L L G+ + Sbjct: 183 KVDGGVM--IARRNSRTELPCDEANFKRVVKTAFGQRRKMLRNALMSLFGKEFPYADHEI 240 Query: 257 TNLRAENLSIEDFCRIT 273 LRAE LS+EDF +T Sbjct: 241 FTLRAERLSVEDFISLT 257 >gi|225016807|ref|ZP_03705999.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum DSM 5476] gi|224950475|gb|EEG31684.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum DSM 5476] Length = 290 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 20/280 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K IL+ + K +GQNFL++ I KIAE G+ G VIE+G G G LTQ L Sbjct: 10 IKEILNRHGFTFSKSLGQNFLINPGICPKIAELGGARPGGGVIEVGTGIGVLTQELAKR- 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124 A KV+ +E D + P+L + ++ N ++I+ D LKVD E+F N+ P+ + AN Sbjct: 69 ADKVVAVEIDSRLLPVLDETLAEFDN-VKIVNQDILKVDLKLLIAEEFGNM--PVTVCAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I + +L + + P ES+T + QKE G RI A+ + G +S+ + + Sbjct: 126 LPYYITSPILMRLLE-ERLP--IESVTAMVQKEAGVRICAEPGTREVGAVSLAVRYFSDP 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQ--- 239 ++F++S F P+P V S V+ + P E ++ + AF +RRKTL Sbjct: 183 KILFNVSRGSFLPAPNVDSCVVRLDVRGETPRGVADEKFFFQLVRAAFSQRRKTLVNPVS 242 Query: 240 ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + G L + I+ RAE L + +F ++N L Sbjct: 243 SALGISKDGVRQALLDSRIKPTARAEELKLYEFIELSNYL 282 >gi|295132335|ref|YP_003583011.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87] gi|294980350|gb|ADF50815.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87] Length = 279 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/259 (37%), Positives = 135/259 (52%), Gaps = 13/259 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVI 76 ++ KK++GQ+FL D NI KKI ++ SL G V+EIG G G LT+ LL +V V+ Sbjct: 21 QVRAKKHLGQHFLKDENIAKKIGDTL-SLSGYDYVLEIGPGMGVLTKFLLQKDT-EVHVV 78 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D + L Q R I + D LK D + F P + N PYNI ++++F Sbjct: 79 EIDAESVDYLNANYLQLHGR--IHEQDFLKYDLTQVFG-HKPFAVTGNFPYNISSQIVFK 135 Query: 137 WISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + D P F + +FQKEV +RI ++ S YG LSVLT A +F + P VF Sbjct: 136 VLEMRDQIPEF----SGMFQKEVAQRICEKEGSKTYGILSVLTQAYYDAEYLFTVPPSVF 191 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ + C E+L +I + F +RRKTLR SLK L + L + Sbjct: 192 NPPPKVDSGVLKLTRKKDYHLKCNEALFFRIVKMGFQQRRKTLRNSLKSLNLPDTLREDA 251 Query: 255 IETNLRAENLSIEDFCRIT 273 I R E LS +DF +T Sbjct: 252 I-FGKRPEQLSTQDFISLT 269 >gi|282859175|ref|ZP_06268297.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010] gi|282587994|gb|EFB93177.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010] Length = 267 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DL+I K+IA++ + I ++EIG G G LTQ L+ R+V +E D Sbjct: 6 PKKNLGQHFLTDLSIAKRIADTVDAYPEIPILEIGPGMGVLTQYLVE-KPREVKAVEIDS 64 Query: 81 QFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L + H N II D LK+D + F+ + N PY+I +++ F + Sbjct: 65 ESVAFLYERFPKLHEN---IIGKDFLKMDLNEIFD-GKQFVLTGNYPYDISSQIFFKMLD 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV R+ A + YG LSVL +F + HVF P P Sbjct: 121 YKELIP---CCTGMIQREVALRMAATPGNKAYGILSVLIQAWYDVEYLFTVDEHVFNPPP 177 Query: 200 KVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S V+ + ++ + C K++ + F +RRK LR SLK++ + + E Sbjct: 178 KVKSAVVRMMRNNVTDLGCDEILFKRLIKTVFNQRRKMLRVSLKQMMNNEKVSEGFFEQE 237 Query: 259 L---RAENLSIEDFCRITNILTDN 279 + R E LSIE F +TNI+ + Sbjct: 238 MMTKRPEQLSIEQFVELTNIVGEE 261 >gi|160901464|ref|YP_001567046.1| dimethyladenosine transferase [Delftia acidovorans SPH-1] gi|160367048|gb|ABX38661.1| dimethyladenosine transferase [Delftia acidovorans SPH-1] Length = 268 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 16/246 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +H L + H IP+K GQNFL D I+ I + G +++EIG G Sbjct: 1 MEGGAMAHRLAFSMKH---IPRKRFGQNFLTDDGIIDGIVSAIDPRPGQSMVEIGPGLMA 57 Query: 61 LTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP 118 LTQ L+ LG VI +++D + + +L++++ D LKVDF + P Sbjct: 58 LTQPLVERLGRLTVIELDRDLA-------VRLRLHEQLDVVESDVLKVDFRAIAARLGVP 110 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +RI NLPYNI + +LF+ + E + QKEV +R+ A ++ YGRL+V+ Sbjct: 111 KLRIAGNLPYNISSPILFHLLEQVD---VVEDQHFMLQKEVIDRMVASPSTAAYGRLTVM 167 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 WR + + P F P PKV S V+ +P +P + L+++ Q AF +RRK L Sbjct: 168 LQWRYAMESVLYVPPESFNPPPKVDSAVVRMVPRESPAALDAKLLEEMVQVAFSQRRKIL 227 Query: 238 RQSLKR 243 R +L R Sbjct: 228 RNTLGR 233 >gi|118595197|ref|ZP_01552544.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181] gi|118440975|gb|EAV47602.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181] Length = 259 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 135/265 (50%), Gaps = 13/265 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D +I+K+I + ++EIG G G LT+ +L+ + VIE Sbjct: 2 IKAKKKFGQNFLTDTSIIKEIINHINPKEKDRILEIGPGMGALTKPILS-KISHIDVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D L + +++ I+QDD L + E + S RII NLPY I T ++ I Sbjct: 61 DSDMVAHLNKTVAD--SQISIMQDDILLMSKEA---LRSFDRIIGNLPYYISTEIMIKMI 115 Query: 139 S-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 D+ F +FQ+EV ERI A + YGRLSVL + A ++ I F P Sbjct: 116 DLIDSKKDFH----FMFQREVAERIAAVPGTKCYGRLSVLIQYFFTAEILLHIPADAFTP 171 Query: 198 SPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PK+ S+ + IP + +++ KK+ + AF ++RKT++ + K + E + GI Sbjct: 172 APKIQSSFVRLIPKKDFDLTFKDMDNFKKVIKLAFHQKRKTIKNNFKNILDEKDFNSLGI 231 Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280 RAENLSI F I N + N+ Sbjct: 232 NPQDRAENLSISTFINIENYMYGNK 256 >gi|110598757|ref|ZP_01387018.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031] gi|110339621|gb|EAT58135.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031] Length = 261 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 11/260 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K H +I KK +GQNFL D NI +KI SSG+ ++EIG G G LT+ ++ + Sbjct: 2 IKVEYKHTEIAAKKKLGQNFLTDRNITRKIVASSGATADDNILEIGPGFGALTREIIAI- 60 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 V+EKD + ++ S++P L++++ D L D E P+R++ N+PY+I Sbjct: 61 CPTFTVVEKDPKLAAFIR---SEYPG-LKVLEADFLDTDLE-LLAGEKPLRVLGNIPYSI 115 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +LF + + S TL+ Q EV RI A+ ++ YG L+V + +F Sbjct: 116 TSPILFKLLEHRRS---FISATLMMQHEVAMRIVARPSTKDYGILAVQMQAFCDVSYLFK 172 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + VF P P V S VI P E ++ + AF +RRKTL +LK NL Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKQESPVEESEGFRRFVRTAFHQRRKTLLNNLKE--SYNL 230 Query: 250 LHQAGIETNLRAENLSIEDF 269 LRAE L+IE+F Sbjct: 231 DAVESSTLKLRAEALTIEEF 250 >gi|212550844|ref|YP_002309161.1| dimethyladenosine transferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549082|dbj|BAG83750.1| dimethyladenosine transferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 262 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 130/261 (49%), Gaps = 9/261 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+I PKK +GQ FL DL++ ++I E++ + V+E+G G G LTQ LL R + V+ Sbjct: 5 YRIFPKKSLGQYFLNDLSVAQRIVETTSFYPELPVLEVGPGTGVLTQFLL-YSKRNLTVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D++ LK Q NR II+ D LK+ F +I N PY+I +++ F Sbjct: 64 EIDERSVNFLKKRYPQLGNR--IIEADFLKLSLGDLF--PGYFYVIGNYPYSIASQIFFK 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + S + + QKEV ER+ + YG ++VL +F + P F Sbjct: 120 ILD---YKDKILSCSGMLQKEVAERLVSSPGKKTYGIITVLLRTWYDVEYLFTVPPSCFN 176 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+PKV S V+ + + C ESL + I + AF +RRK LR SLK L Sbjct: 177 PNPKVDSAVVRMVRNGRTNLGCDESLFRTIVKTAFNQRRKILRNSLKSLFRRETSISISP 236 Query: 256 ETNLRAENLSIEDFCRITNIL 276 R E LSIE+F + N+ Sbjct: 237 LFYKRPEQLSIEEFIELANLF 257 >gi|161869639|ref|YP_001598806.1| dimethyladenosine transferase [Neisseria meningitidis 053442] gi|189028812|sp|A9M352|RSMA_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|161595192|gb|ABX72852.1| dimethyladenosine transferase [Neisseria meningitidis 053442] Length = 259 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139 LK + ++L I + D L+ DF I+ +I+ NLPYNI T LLF ++ Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + + QKEV +R+ A S YGRL V+ + ++ D+ P F P+P Sbjct: 121 DDVV-----DMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255 >gi|170017706|ref|YP_001728625.1| dimethyladenosine transferase [Leuconostoc citreum KM20] gi|226732593|sp|B1N079|RSMA_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169804563|gb|ACA83181.1| Dimethyladenosine transferase [Leuconostoc citreum KM20] Length = 295 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 142/285 (49%), Gaps = 29/285 (10%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + KK GQNFL DLN+L I + +G VIEIG G G LT+ L A Sbjct: 14 QAILNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQ-LARSA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E D +L + + N +++I++D LKV+ F + ++I+ANLP Sbjct: 73 KKVVAFEIDPHMVAVLAETLLPYDN-VKVIENDILKVNLAHVIATEFGEGAHVKIVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + A W+++ ++ Q+EV +R+ A+ + YG L++ + +A + Sbjct: 132 YYITTPILMQLLRAKIS---WDNIVVMMQREVADRLNAEIGTKAYGVLTLTIQYYAQAQL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL------NPIPCCLESLKKITQEAFGKRRKTLRQS 240 + F PSP V S V+ P + NP + L + + +F RRK+L + Sbjct: 189 AIKVPASAFNPSPNVDSAVVMLTPIVPETVVDNP-----DKLFSVVKGSFAHRRKSLWNN 243 Query: 241 LKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + ++ G ++ L I +++RAE LS+ + L Sbjct: 244 MLQMFGKQEDVKQRIQDALDSVNIASSIRAERLSLNQLTALYEAL 288 >gi|258647596|ref|ZP_05735065.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259] gi|260852403|gb|EEX72272.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259] Length = 271 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 133/272 (48%), Gaps = 30/272 (11%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL + IA++ + + V+E+G G G LTQ LL G R+ V+E Sbjct: 4 VKPKKNLGQHFLTDLPTAQAIADTIDACPDLPVLEVGPGMGMLTQFLLPKG-RETKVVEI 62 Query: 79 DQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D++ +P L D I+ +D L++D K F P + N PY+I + Sbjct: 63 DRESVAYLLNRWPALAD---------NILGEDFLRMDLSKVFG-GRPFVLTGNYPYDISS 112 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ F + + P T + QKE ERI A + YG LSVL +F + Sbjct: 113 QIFFKMLDFKDYIP---CCTGMIQKEAAERIAAPPGTKAYGILSVLLQRWYSVEYLFTVE 169 Query: 192 PHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 PHVF P PKV S V+ + + C + L+++ + +F +RRK LR SLK L + Sbjct: 170 PHVFNPPPKVRSAVVRMTRNDVTDCGCNEQLLRRVVKTSFNQRRKMLRGSLKPLFAQLNN 229 Query: 251 HQAGI--------ETNLRAENLSIEDFCRITN 274 Q + +R E LS+E F +TN Sbjct: 230 EQNKVLDHTDFLLPLTMRPEQLSVEQFVDLTN 261 >gi|212278071|gb|ACJ23050.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEI G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEISPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|300728350|ref|ZP_07061714.1| dimethyladenosine transferase [Prevotella bryantii B14] gi|299774386|gb|EFI71014.1| dimethyladenosine transferase [Prevotella bryantii B14] Length = 270 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 133/261 (50%), Gaps = 15/261 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DLNI K IA++ + I V+E+G G G LTQ L T RKV V+E D Sbjct: 6 PKKNLGQHFLTDLNIAKAIADTVDACPDIPVLEVGPGMGVLTQYLKT-KDRKVRVVEIDS 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L + S +I+ +D L++D K F+ P + N PY+I +++ F + Sbjct: 65 ESVAFLHENFSFMSE--DILGEDFLRMDLNKVFD-GQPFVLTGNYPYDISSQIFFKMLDN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + Q+EV RI +Q + YG LSVL +F + +VF P PK Sbjct: 122 KELIP---CCTGMIQREVALRIASQPGNKAYGILSVLIQAWYNVEYLFTVDENVFNPPPK 178 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-----GGENLLHQAG 254 V S VI + + + C + K++ + F +RRK LR S+K++ E + G Sbjct: 179 VKSAVIRMTRNDVMDLGCDEKLFKRLVKTVFNQRRKMLRVSIKQMFPGVKASEEFM--TG 236 Query: 255 IETNLRAENLSIEDFCRITNI 275 R E LSI+ F +TN+ Sbjct: 237 ELMTKRPEQLSIQQFIELTNL 257 >gi|148270487|ref|YP_001244947.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1] gi|166221712|sp|A5IME8|RSMA_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147736031|gb|ABQ47371.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1] Length = 260 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 133/255 (52%), Gaps = 18/255 (7%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + KK++GQ FL D I K+I + G V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGVKLKKHLGQVFLSDDRIAKRIVKEVGLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ P+L++ S++PN +E+ +D LK +I ++N+PY+I + Sbjct: 66 IAYEIDESLAPVLRERLSKYPN-VELRFEDFLKAK-----DIPEGAICVSNIPYSITGPI 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I W ++ ++ QKEVGERI A+ YG LSV+ + +FD+S Sbjct: 120 MEKIIE---WK--FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V STV+ + E +K F K+RKTL+ +L+ L Sbjct: 175 CFVPNPEVDSTVVDL--RRKSVDLDFEKFRKFVSMIFAKKRKTLKNNLRPF----LSVFE 228 Query: 254 GIETNLRAENLSIED 268 G++ + RAE L++E+ Sbjct: 229 GVDLSRRAEQLTVEE 243 >gi|320095741|ref|ZP_08027390.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977327|gb|EFW09021.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 301 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 21/282 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I I P K +GQNF+ D +++I ++G +G VIE+G G G+LT LL G Sbjct: 3 VRAISGALGIRPTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLEAG 62 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF--NISSPIRIIA 123 AR V +E D L + +RL ++ DA + + P +++A Sbjct: 63 AR-VRAVEIDPVLAAALPETVRARMGGAADRLHVVTADATAITGPADLGPDWPPPAKLVA 121 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + D++P + L ++ Q EV +R+ A S YG SV W + Sbjct: 122 NLPYNVAVPVLLAML--DSFPTLTDVL-VMVQAEVADRLAAGPGSRTYGVPSVKAAWYGR 178 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239 AT I VF+P P V S ++ + ++L++ T E AFG+RRKTLR Sbjct: 179 ATRAGTIGRSVFWPVPGVDSALVRL--RRSAEARGDDALRRATFEATDAAFGQRRKTLRA 236 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK G E LL +AGI+ R E L+I++F R+ L Sbjct: 237 ALKDWAGGAAASEALLAEAGIDPARRGETLTIDEFTRLGAAL 278 >gi|212278069|gb|ACJ23049.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K G NFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGPNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|269216111|ref|ZP_06159965.1| dimethyladenosine transferase [Slackia exigua ATCC 700122] gi|269130370|gb|EEZ61448.1| dimethyladenosine transferase [Slackia exigua ATCC 700122] Length = 292 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 138/273 (50%), Gaps = 18/273 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + + L+ + + KK +GQNFL+ I+ KI E + G V+E+G G G LT + L Sbjct: 12 ATRAALARHGLAAKKALGQNFLIHDAIVGKICELAQVDAGDDVLEVGPGIGTLT-VALCA 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 AR V IE+D+ P+L++ S + + + DAL+V + + P +++ANLPY Sbjct: 71 RARAVHAIERDRDLAPVLEE-SCWNFDNFTLHMGDALQVGSDDLGGFA-PTKLVANLPYA 128 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + L+ ++ D +P S+T++ Q EV +R+ A + Y SV R +AT F Sbjct: 129 VAATLVLDFF--DRFPSM-RSMTVMVQSEVADRMAASLGTKDYAAYSVKLALRAQATGRF 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK----RL 244 +++P F P+P V+S VI + P + AF RRKT+ S+K R Sbjct: 186 EVAPSNFMPAPHVSSAVIRLDRVQDHAPDDVALASVAADAAFAARRKTIANSMKAYFSRP 245 Query: 245 GGENL--------LHQAGIETNLRAENLSIEDF 269 G +L L AGI+ R E LS+++F Sbjct: 246 GSRHLEAADIVHALETAGIDARRRGETLSLDEF 278 >gi|194336270|ref|YP_002018064.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme BU-1] gi|194308747|gb|ACF43447.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme BU-1] Length = 262 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 133/258 (51%), Gaps = 13/258 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +I KK +GQNFL D NI +KI +SG+ ++EIG G G LT+ ++ V Sbjct: 9 HTEIAVKKKLGQNFLTDRNITRKIVIASGATPQDNILEIGPGFGALTRAIMEFCPL-FTV 67 Query: 76 IEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +EKD + L D I S++P +L +I+ D L+ D + P++I+ N+PY+I T +L Sbjct: 68 VEKDHK----LADFIRSEYP-QLNLIEGDFLETDLAALAH-DKPLKILGNIPYSITTPIL 121 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + S TL+ Q EV RI A ++ YG L+V +F + V Sbjct: 122 FKLLEHRHT---FFSATLMMQHEVAMRIVAHPSTKDYGILAVQMQAFCDVNYLFKVGRKV 178 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P V S V+ P N + ++ + AF +RRKTL +LK NL A Sbjct: 179 FRPQPGVDSAVLQMTPKNNVPLNDADGFRRFVRIAFHQRRKTLLNNLKE--SYNLESVAN 236 Query: 255 IETNLRAENLSIEDFCRI 272 LRAE LS+EDF ++ Sbjct: 237 HTLKLRAEALSVEDFFQL 254 >gi|212278073|gb|ACJ23051.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 13/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEI G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIDPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256 >gi|317054978|ref|YP_004103445.1| dimethyladenosine transferase [Ruminococcus albus 7] gi|315447247|gb|ADU20811.1| dimethyladenosine transferase [Ruminococcus albus 7] Length = 286 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 18/282 (6%) Query: 3 MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+N S+ +K ++ + K +GQNFL++ ++ +IAE + G VIEIG G G Sbjct: 1 MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKAGYGVIEIGTGVGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LT L A KV+ IE D + P+L++ ++H N +++I D +KVD K Sbjct: 61 LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMKVDLHKLIEDEFSGM 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + + ANLPY I + +L + S+T++ QKE G R+ A + G ++V Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRLR---IRSVTVMVQKEAGTRLCAPLGTRDMGAVTVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRK 235 + ++ ++F++S F P+P V S V+ F I P E+ K+ + AF +RRK Sbjct: 176 VNYFSEPKILFNVSRGSFMPAPNVDSCVVRFDIKENTPEGVTDEAFFFKMVRAAFSQRRK 235 Query: 236 TLRQSLKR-LGGEN-----LLHQAGIETNLRAENLSIEDFCR 271 TL S+ LG + + +G++ N+R E L +++F R Sbjct: 236 TLVNSVSAGLGADKQTVAAAVENSGLQANVRPEQLLMKEFVR 277 >gi|15594935|ref|NP_212724.1| dimethyladenosine transferase [Borrelia burgdorferi B31] gi|195941723|ref|ZP_03087105.1| dimethyladenosine transferase [Borrelia burgdorferi 80a] gi|216264801|ref|ZP_03436793.1| dimethyladenosine transferase [Borrelia burgdorferi 156a] gi|218249411|ref|YP_002375098.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7] gi|223888886|ref|ZP_03623477.1| dimethyladenosine transferase [Borrelia burgdorferi 64b] gi|224532720|ref|ZP_03673337.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23] gi|225548676|ref|ZP_03769723.1| dimethyladenosine transferase [Borrelia burgdorferi 94a] gi|226321896|ref|ZP_03797422.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26] gi|27151556|sp|O51536|RSMA_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729758|sp|B7J2F3|RSMA_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2688507|gb|AAB91517.1| dimethyladenosine transferase (ksgA) [Borrelia burgdorferi B31] gi|215981274|gb|EEC22081.1| dimethyladenosine transferase [Borrelia burgdorferi 156a] gi|218164599|gb|ACK74660.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7] gi|223885702|gb|EEF56801.1| dimethyladenosine transferase [Borrelia burgdorferi 64b] gi|224512338|gb|EEF82722.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23] gi|225370706|gb|EEH00142.1| dimethyladenosine transferase [Borrelia burgdorferi 94a] gi|226233085|gb|EEH31838.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26] gi|312147958|gb|ADQ30617.1| dimethyladenosine transferase [Borrelia burgdorferi JD1] Length = 281 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 149/286 (52%), Gaps = 24/286 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T++LL + E D ++ IL + + N ++I+ D LK K+ N + Sbjct: 66 LGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L K + DI + F+P+PKV ST + IP N I E K+ + F RRK Sbjct: 176 LVQSHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKNNIKNFKE-FNKLVRTVFSNRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ ++ K EN L + + R EN+S+E+F +I+N L Sbjct: 235 LKNTIINFITNKATLRENFLKEY---LDKRPENISVEEFIQISNTL 277 >gi|268318145|ref|YP_003291864.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252] gi|262335679|gb|ACY49476.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252] Length = 266 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 143/268 (53%), Gaps = 32/268 (11%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQ+FL+D NI +KI + + V+EIG G G LT +LL + IE D Sbjct: 7 PRKRLGQHFLVDPNIARKIVAALQAAPEDPVVEIGPGTGALTGLLLERYP-HLTAIEIDP 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 + + ++ ++ P L++ Q+D LKV++ + + ++ NLPY I + +LF + Sbjct: 66 R---AVAELKARWPE-LDVRQEDVLKVNWAELAEEKGGRLHVVGNLPYYITSPILFALLD 121 Query: 140 ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTG-WRTKATMMFDISPHVF 195 A E+L L+ Q+EV ER+ A S YG LSV W T A ++F +S HVF Sbjct: 122 AR------EALAEAVLMMQREVAERLVAPPGSKTYGILSVAAQLWATPA-LLFPVSRHVF 174 Query: 196 FPSPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248 P P+V S V+ +P ++P E L+++ + AF +RRKTLR SL+RL G Sbjct: 175 RPKPRVESAVVRLTFERPLPDVDP-----ELLRQVIRTAFNQRRKTLRNSLRRLLPSGTP 229 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 L RAE+LS +D+ +T L Sbjct: 230 LPDPWA---QARAEDLSPDDYVALTRWL 254 >gi|51598843|ref|YP_073031.1| dimethyladenosine transferase [Borrelia garinii PBi] gi|62900508|sp|Q660T2|RSMA_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51573414|gb|AAU07439.1| dimethyladenosine transferase [Borrelia garinii PBi] Length = 281 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 150/286 (52%), Gaps = 24/286 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K IL KI P+K GQN+L++ +I +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T +LL + E D ++ IL + + N ++I+ D LK K+ N + Sbjct: 66 LGAMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENK 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L A + DI + F+P+PKV ST + IP N I E K+ + F RRK Sbjct: 176 LVQSHFTAIKIIDIGENNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSGRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ ++ K + EN L + R EN+S+E+F +I+N L Sbjct: 235 LKNTIINFIKNKAILEENFLKEY---LGKRPENISVEEFIQISNNL 277 >gi|315187092|gb|EFU20849.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6578] Length = 280 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 17/267 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +++ + + K GQ+FL+ ++L++I + G V EIG G G LT LL G Sbjct: 10 MRELMARHGLRALKRFGQHFLVRDDVLRRIVRALDLHPGEQVWEIGPGIGALTAHLLDEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +V+ E D+ F IL++ + P L I++ D ++ + + P R++ NLPYN+ Sbjct: 70 V-EVVGFEIDRGFVSILREEFGEAP--LTIVEGD-VRDTWRTVYQRRVPHRVVGNLPYNV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ +++ P + Q+EV ER+ A SP YG LSV+ G + ++F Sbjct: 126 ATSIILDFLEGGLVVP----QVFMVQREVAERMAASVGSPAYGALSVIVGTFYRCELLFH 181 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR--LGG 246 + P F+P PKV S+V+ P +P+ + S F RRK L+ L R LG Sbjct: 182 VPPTAFYPRPKVWSSVLRLHPVTSPVSQEDIPSFLSFVWNLFRYRRKMLKNVLLRSPLGA 241 Query: 247 E------NLLHQAGIETNLRAENLSIE 267 E +LL + GI+ LRAE L ++ Sbjct: 242 EGVEEVGSLLERVGIDPTLRAEQLPLD 268 >gi|88801801|ref|ZP_01117329.1| dimethyladenosine transferase [Polaribacter irgensii 23-P] gi|88782459|gb|EAR13636.1| dimethyladenosine transferase [Polaribacter irgensii 23-P] Length = 267 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 20/264 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D +I K IA++ V+EIG G G LT+ LL A K+ V+E D++ Sbjct: 6 KKHLGQHFLTDESIAKNIADALSGNGYDDVLEIGPGMGILTKYLLPQKA-KITVMELDRE 64 Query: 82 -------FFPILK---DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 FP+ D S+ H +++ D LK + + F+ + II N PYNI T Sbjct: 65 SVAYLHDTFPLEHLTLDTSAAH---FSVLEGDFLKKNIQDIFH-KKQVAIIGNFPYNIST 120 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F I + P + + FQKEV +RI ++ S YG +SVLT +F + Sbjct: 121 QIVFKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGIMSVLTQAFFDVEYLFTVP 177 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P VF P PKV S VI + + +P + ++ + AF +RRK LR SLK L + L Sbjct: 178 PDVFNPPPKVDSGVIRLVRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSLNLSDSL 237 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 + I T R E LS+ F +T Sbjct: 238 KEDPIFTK-RPEQLSVAAFIALTQ 260 >gi|282878182|ref|ZP_06286978.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310] gi|281299600|gb|EFA91973.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310] Length = 271 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 13/259 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DL+I K+IA++ + I ++EIG G G LTQ L+ R+V +E D+ Sbjct: 6 PKKNLGQHFLTDLSIAKRIADTVDACPSIPILEIGPGMGVLTQYLVE-KPREVKAVEIDR 64 Query: 81 QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L++ P R II D L++D + F+ + N PY+I +++ F + Sbjct: 65 ESVAYLRE---NFPKLRDNIIGQDFLRMDLHQVFD-GQQFVLTGNYPYDISSQIFFKMLD 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV +RI ++ + YG LSVL +F + HVF P P Sbjct: 121 YKDLIP---CCTGMIQREVAQRIASEPGNKAYGILSVLIQAWYHVEYLFTVDEHVFNPPP 177 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGI 255 KV S VI + ++ + C K++ + F +RRK LR SL++L G + AG Sbjct: 178 KVKSAVIRMTRNEVHDLGCDEMFFKRVVKTVFNQRRKMLRVSLRQLFPGEGASAEFYAGE 237 Query: 256 ETNLRAENLSIEDFCRITN 274 R E LS+ F +TN Sbjct: 238 LMTKRPEQLSVAQFVALTN 256 >gi|193212495|ref|YP_001998448.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327] gi|226729768|sp|B3QMU5|RSMA_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|193085972|gb|ACF11248.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327] Length = 274 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/269 (34%), Positives = 134/269 (49%), Gaps = 15/269 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K H I KK +GQNFLLD NI +KI SG +G V+EIG G G L+ +L + Sbjct: 3 KVEYKHTHIAAKKKLGQNFLLDKNIPRKIVRESGIKEGDLVLEIGPGFGALSTAILEV-M 61 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 IEKD + + + I +HP + +I+ D LKV E S + ++ N+PY+I Sbjct: 62 PSFTAIEKDPE---LARFIREEHPE-INLIEGDFLKVPLEPLTG-SGKLAVLGNIPYSIT 116 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +LF + ES TL+ Q EV +RITA + YG L+V +F + Sbjct: 117 SPILFRLLDNRH---LIESATLMMQHEVAQRITAVPGTKEYGILAVQMQAFCDVKYLFKV 173 Query: 191 SPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 VF P P+V S VI +P NP+ E + + AF +RRKTL +LK + Sbjct: 174 GRAVFKPRPEVDSAVIRLVPKAQNPVEDS-EGFRTFVRRAFHQRRKTLWNNLKEYYNTS- 231 Query: 250 LHQAGIET-NLRAENLSIEDFCRITNILT 277 + ET LRAE L++E + LT Sbjct: 232 --EVPAETLKLRAEALTVEGLIELFEKLT 258 >gi|309378797|emb|CBX22623.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 259 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 132/263 (50%), Gaps = 21/263 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L A+K+ V+E Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPL----AKKLNCLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW- 137 D+ LK + ++L I + D L+ DF +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 138 -ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ D + + QKEV ER+ A S YGRL V+ + ++ D+ P F Sbjct: 118 EVADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFD 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+PKV S V+ IP + I E K+ + AF +RRKT+R +LK L + L G Sbjct: 173 PAPKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVG 232 Query: 255 IETNLRAENLSIEDFCRITNILT 277 I RAE+++ E + ++N L Sbjct: 233 INPQDRAEHIAPEKYVALSNYLA 255 >gi|307566374|ref|ZP_07628813.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A] gi|307344951|gb|EFN90349.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A] Length = 267 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 137/264 (51%), Gaps = 15/264 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DL+I K+IA++ S I ++EIG G G LTQ L+ R++ V+E D Sbjct: 6 PKKNLGQHFLTDLSIAKRIADTVDSYPNIPILEIGPGMGVLTQYLVE-KHREIKVVEIDA 64 Query: 81 QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L D + PN R II D LK+D + F + N PY+I +++ F + Sbjct: 65 ESVKYLND---RFPNLRENIIGKDFLKMDLKNIF-YGKQFVLTGNYPYDISSQIFFKMLD 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV R+TA+ + YG LS+L +F + VF P P Sbjct: 121 YKDLIP---CCTGMIQREVAIRMTAKPCNKTYGILSILIQAWYDVEYLFTVDETVFNPPP 177 Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL----GGENLLHQAG 254 KV S VI + C E+L K++ + F +RRK LR SLK++ + + Sbjct: 178 KVKSAVIRMTRNKVTSLGCDENLFKRLVKTVFNQRRKMLRVSLKQIIKSYSTSEVFFKQD 237 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 I T R E LSI+ F +TN++++ Sbjct: 238 IMTK-RPEQLSIKQFVELTNMVSE 260 >gi|288924741|ref|ZP_06418678.1| dimethyladenosine transferase [Prevotella buccae D17] gi|288338528|gb|EFC76877.1| dimethyladenosine transferase [Prevotella buccae D17] Length = 269 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 135/270 (50%), Gaps = 31/270 (11%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DLNI ++IA++ + G+ V+EIG G G LTQ L+T R+V +E D+ Sbjct: 6 PKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEIDR 64 Query: 81 -------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + FP L+D II +D L++D F P + N PY+I +++ Sbjct: 65 ESVAYLHETFPTLRD---------NIIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + Q+EV R+ ++ + YG LSVL +F + Sbjct: 115 FFKMLDNRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDED 171 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL------GG 246 VF P PKV S VI + + + C K++ + F +RRK LR SLK+L G Sbjct: 172 VFNPPPKVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSG 231 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E A + T R E L+I F +TN++ Sbjct: 232 E--FFTAEVMTR-RPEQLTIAQFVELTNVV 258 >gi|291543732|emb|CBL16841.1| dimethyladenosine transferase [Ruminococcus sp. 18P13] Length = 285 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 16/265 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL++ + +IAE + G V+EIG G G LT L A KV+ +E DQ+ Sbjct: 23 KGLGQNFLINPTVCPRIAELGNARPGFGVLEIGTGFGVLTAELAKR-ADKVVAVEIDQRL 81 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWIS 139 P+L++ + N ++I+ D +K+D P+ + ANLPY I + +L + Sbjct: 82 LPVLEETLADFDN-VKIVPGDIMKIDVAALLRQEFGGLPVAVCANLPYYITSPILMLLL- 139 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ P S+T++ QKE +R+ AQ + G ++V + +A +F +S F P+P Sbjct: 140 -ESRLPLT-SITVMVQKEAAQRLCAQVGTREAGAITVGVHYYGEARQLFPVSRGSFMPAP 197 Query: 200 KVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG------ENLLH 251 V S VI H NP P L+ ++ + F +RRKTL SL L G L Sbjct: 198 NVDSAVIRIDLHENPHPEGLDEGFFFRMVKAGFSQRRKTLANSLASLLGIPKQAVYAALE 257 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 QAG+ R E L++E + IL Sbjct: 258 QAGLAPAARIEQLTMEQLFALARIL 282 >gi|148989985|ref|ZP_01821260.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73] gi|147924645|gb|EDK75731.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73] Length = 252 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 D + VIEIG G G LT+ L A +V+ E D + PIL D N + ++ +D LK Sbjct: 8 DQVNVIEIGPGIGALTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILK 65 Query: 107 VDF----EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 VD + F N + PI+++ANLPY I T +L + I + PF E ++ QKEV +RI Sbjct: 66 VDLAQHIQNFKNPNLPIKVVANLPYYITTPILMHLIESGI--PFSE-FVVMMQKEVADRI 122 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES- 221 +AQ N+ YG LS+ + A + F + VF P+P V S ++ + P + Sbjct: 123 SAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDEN 182 Query: 222 -LKKITQEAFGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCR 271 K+++ +F RRKTL +L G+ L QAG+ ++R E LS+ +F Sbjct: 183 FFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAG 242 Query: 272 ITNIL 276 + + L Sbjct: 243 LADAL 247 >gi|134097408|ref|YP_001103069.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL 2338] gi|291004602|ref|ZP_06562575.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL 2338] gi|133910031|emb|CAM00143.1| dimethyladenosine transferase (rRNA methylation) [Saccharopolyspora erythraea NRRL 2338] Length = 282 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 14/274 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I P K +GQNF+ D N +++I ++ V+E+G G G+LT LL + Sbjct: 7 VRRLAGELGIRPTKKLGQNFVHDPNTVRRIVAAASLTAEDVVLEVGPGLGSLTLALLPV- 65 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L+ +S++ RL +++ DAL+V + + P ++ANL Sbjct: 66 AGAVTAVEIDPVLAARLERTASEYSPALAGRLRVVEADALRVRADDLGD-RRPTALVANL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P L ++ Q EV +R+ A+ + YG S W Sbjct: 125 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQSEVADRMAARPGNRTYGVPSAKAAWFADVR 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + +VF+P P V S ++ F P + ++ AF +RRKTLR +L Sbjct: 182 RAGPVPRNVFWPVPNVDSGLVSFTRVEPPSEVARADVFRVVDAAFAQRRKTLRAALSGWA 241 Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E LL AG++ R E L I DF RI Sbjct: 242 GSAARAERLLRAAGVDPAARGEQLEIADFARIAE 275 >gi|33594223|ref|NP_881867.1| dimethyladenosine transferase [Bordetella pertussis Tohama I] gi|62900576|sp|Q7VU11|RSMA_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33564298|emb|CAE43596.1| dimethyladenosine transferase [Bordetella pertussis Tohama I] gi|332383637|gb|AEE68484.1| dimethyladenosine transferase [Bordetella pertussis CS] Length = 265 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 15/252 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQ+FL D ++++ I + G V+EIG G LT+ LL + + I++D Sbjct: 7 RKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRD- 65 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + Q+P RL +++ DAL VDF +F +R++ NLPYNI + LLF+ + Sbjct: 66 ----LAARLRRQYPAERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLMG 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A + Q+EV +R+ A+ S Y RLSV+ R + +FD++P F P P Sbjct: 119 AAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPPP 175 Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 +V S V+ +P P + + + AF +RRK LR+ L + GI Sbjct: 176 RVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLDDWAALTPWDELGIAP 235 Query: 258 NLRAENLSIEDF 269 RAE + + F Sbjct: 236 TARAEEVGVAQF 247 >gi|146298606|ref|YP_001193197.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101] gi|189028808|sp|A5FLP4|RSMA_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146153024|gb|ABQ03878.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101] Length = 261 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 141/269 (52%), Gaps = 31/269 (11%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLT--LGARKVI 74 K+ KK++GQ+FL D +I K IA++ SL G V+EIG G G LT+ LL + R Sbjct: 3 KVKAKKHLGQHFLKDESIAKAIADTL-SLKGYDEVLEIGPGMGVLTKYLLDKPVNTR--- 58 Query: 75 VIEKDQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 VIE D + +P LKD +II +D LK + + + + II N PY Sbjct: 59 VIEIDTESVEYLGVNYPKLKD---------KIISEDFLKYNINQVYE-NKQFAIIGNFPY 108 Query: 128 NIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 NI ++++F + D P F + +FQKEV ERI +K S YG LSVL Sbjct: 109 NISSQIVFRTLEFRDQIPEF----SGMFQKEVAERICEKKGSKTYGILSVLAQAFYDTEY 164 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 +F +S +VF P PKV S V+ + +PC + + + AF +RRKTLR SLK L Sbjct: 165 LFTVSENVFIPPPKVKSGVMKMTRKEDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLN 224 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274 + L + I + R E LS+E+F +T Sbjct: 225 LSDKLRE-DIIFDKRPEQLSVEEFIVLTQ 252 >gi|225551958|ref|ZP_03772898.1| dimethyladenosine transferase [Borrelia sp. SV1] gi|225370956|gb|EEH00386.1| dimethyladenosine transferase [Borrelia sp. SV1] Length = 281 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 24/286 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T++LL + E D ++ IL + + N ++I+ D LK K+ N + Sbjct: 66 IGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTIQKELADRITAKINSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L A + DI F+P+PKV ST + +P N I E K+ + F RRK Sbjct: 176 LVQSHFNAIKILDIGESNFYPAPKVKSTTLKLVPKKNNIKNFKE-FNKLVRTVFSSRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ ++ K EN L + + R EN+S+E+F +I+N L Sbjct: 235 LKNTIINFIANKATLRENFLKEY---LDKRPENISVEEFIQISNTL 277 >gi|115252788|emb|CAK98224.1| putative dimethyladenosine transferase protein [Spiroplasma citri] Length = 282 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 139/268 (51%), Gaps = 19/268 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ KK GQNFL + + + I +S+ L ++EIG G G LT +L L A K++ +E Sbjct: 13 IVVKKSKGQNFLTNTHFINLIVDSAFDLPNTNILEIGPGMGALTSSIL-LKANKLVCVEI 71 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLL 134 D L + + N L IIQ D L +D EK F ++PI II+N+PY I + ++ Sbjct: 72 DSTLVEYL-TLKFKDQN-LTIIQADILTLDLEKLFLTEFLDNNPISIISNIPYYITSPII 129 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + P + + L+ QKEVGERI AQ NS +Y LSV+ + + + + + Sbjct: 130 FKLLKIKN--PKVKEIILMMQKEVGERIMAQPNSKNYNSLSVVCQFYSDIEKVSLVGRNN 187 Query: 195 FFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSL-----KRLGG 246 F P+PKV S V+ F LN P + K + F +RKT+ +L + Sbjct: 188 FVPAPKVDSIVLKF--KLNKKYPALINDKEFIKFIRMMFATKRKTILNNLAIIVNNKTLA 245 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E++L + NLR+ENLS+ DF + N Sbjct: 246 EDILLKLNYALNLRSENLSLNDFYLLYN 273 >gi|120437829|ref|YP_863515.1| dimethyladenosine transferase [Gramella forsetii KT0803] gi|117579979|emb|CAL68448.1| dimethyladenosine transferase [Gramella forsetii KT0803] Length = 281 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 132/254 (51%), Gaps = 11/254 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D NI KIA++ V+EIG G G LT+ LL A +V VIE D + Sbjct: 26 KKHLGQHFLTDENIAAKIADTLSYNGYEKVLEIGPGTGVLTKHLLEKDA-EVHVIEIDTE 84 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA- 140 L+ S R I + D LK D + F II N PYNI T+++F + Sbjct: 85 SVEYLE--SHYLHLRGRIHEKDFLKHDLGQIFG-QEQFAIIGNFPYNISTQIVFKVLQMR 141 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D P F + +FQKEV +RI ++ + YG LSVLT +A +F + P VF P PK Sbjct: 142 DQIPEF----SGMFQKEVAKRICEKEGNKTYGILSVLTQAFYEAEYLFTVPPSVFNPPPK 197 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S V+ N C E L +I + +F +RRKTLR SLK L + L + I L Sbjct: 198 VDSGVLRLRRKENFSLDCNEKLFFRIVKTSFNQRRKTLRNSLKSLNLPDNLREDAI-FGL 256 Query: 260 RAENLSIEDFCRIT 273 R E L + F +T Sbjct: 257 RPEQLGFQQFIELT 270 >gi|212278087|gb|ACJ23058.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 13/257 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNI 275 RAE+++ E C + + Sbjct: 237 DRAEHIAPEKICGVEQL 253 >gi|289739481|gb|ADD18488.1| mitochondrial transcription factor [Glossina morsitans morsitans] Length = 334 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 23/297 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI-EIGAGPGNLTQMLLT 67 +L+ I+ Y + K + QNFL+D + KI + G +D V+ E+G GPG +T+ ++ Sbjct: 20 TLRDIVKLYNLRAVKQLSQNFLMDERLTDKIVKQCGRIDSKDVVLEVGPGPGGITRSIIR 79 Query: 68 LGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 + ++V+EKD +F P +L++ + +++I DD L + E +I+ + +I Sbjct: 80 REPKHIVVVEKDARFLPTLELLRECVAPLNIQMQIFVDDILTFNIENHLPDITQRLHLIG 139 Query: 124 NLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP++I TRLL NW+ + +TL FQKEV ERI A RLSV++ Sbjct: 140 NLPFSISTRLLINWLEDVSLRRGAFRRHDTCMTLTFQKEVAERICAPFGHEQRCRLSVMS 199 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237 T+ + F I F P P+V V+ +P P ++K+ + F R+K Sbjct: 200 QIWTQPFLKFVIPGTAFVPKPEVDVGVVKLMPLKEPKTTLDFRLVEKVVRHIFNMRQKYC 259 Query: 238 RQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRI----TNILTDNQDI 282 R+ L + L +A +E LR LS+++ R+ +N + N ++ Sbjct: 260 RRGFGTLFPPDQRESVTFELFKEADVEDTLRPFQLSVDECLRLATAYSNFIQKNPEV 316 >gi|77165198|ref|YP_343723.1| 16S rRNA dimethylase [Nitrosococcus oceani ATCC 19707] gi|254434334|ref|ZP_05047842.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27] gi|119365041|sp|Q3JAF3|RSMA_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|76883512|gb|ABA58193.1| dimethyladenosine transferase [Nitrosococcus oceani ATCC 19707] gi|207090667|gb|EDZ67938.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27] Length = 264 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 9/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 +K GQ+FL D +++++ + ++EIG G G LT LL LG + I +++D Sbjct: 9 RKRFGQHFLHDKGVIERLLRAINPQLNDLMVEIGPGQGALTLPLLHCLGHLEAIELDRDL 68 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + +++ +S+ RL + D+L DF + + +R++ NLPYNI T LLF+ + Sbjct: 69 AAY-LVERCASEGNLRLHNV--DSLTFDFRTLAHENRRLRVVGNLPYNISTPLLFHLLGQ 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 E + + Q+EV R+ A+ YGRLSV+ + + +F + F P PK Sbjct: 126 IG---ILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSGAFVPPPK 182 Query: 201 VTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ IPH + + +L ++ +AF +RRKTL +LK L L GI+ Sbjct: 183 VDSMVVRLIPHRPSLAPNISHGALNRVVSQAFSQRRKTLANALKGLLSSAELIALGIDPR 242 Query: 259 LRAENLSIEDFCRIT 273 R E +S+ED+ +T Sbjct: 243 QRPETISLEDYLALT 257 >gi|328883016|emb|CCA56255.1| Dimethyladenosine transferase [Streptomyces venezuelae ATCC 10712] Length = 291 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 19 IRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 77 Query: 70 ARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L I+++ P +R ++ DA+ V+ P ++ANL Sbjct: 78 ADRVTAVEIDDVLAAALPSTIAARMPARADRFALVHSDAMHVE---ELPGPPPTALVANL 134 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + +P +L ++ Q EV +R+ A+ + YG SV W + Sbjct: 135 PYNVAVPVLLHML--ERFPSIERTL-VMVQAEVADRLAAKPGNKVYGVPSVKANWYAEVK 191 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243 I +VF+P+P V S ++ + P+ + + + AF +RRKTLR +L Sbjct: 192 RAGAIGRNVFWPAPNVDSGLVSLVRRAEPLATTATRQEVFAVVDAAFAQRRKTLRAALAT 251 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L +AGI R E L++E+F RI Sbjct: 252 WAGSPAAAEEALVKAGISPQARGEGLTVEEFARIAE 287 >gi|212278085|gb|ACJ23057.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 13/257 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCRITNI 275 RAE+++ E C + + Sbjct: 237 DRAEHIAPEKVCGVEQL 253 >gi|33603074|ref|NP_890634.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50] gi|62900581|sp|Q7WG20|RSMA_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33568705|emb|CAE34463.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50] Length = 265 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 15/252 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQ+FL D ++++ I + G V+EIG G LT+ LL + + I++D Sbjct: 7 RKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRD- 65 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + Q+P RL +++ DAL VDF +F +R++ NLPYNI + LLF+ + Sbjct: 66 ----LAARLRRQYPAERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLMG 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A + Q+EV +R+ A+ S Y RLSV+ R + +FD++P F P P Sbjct: 119 AAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPPP 175 Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 +V S V+ +P P + + + AF +RRK LR+ L + GI Sbjct: 176 RVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIAP 235 Query: 258 NLRAENLSIEDF 269 RAE + + F Sbjct: 236 TARAEEVGVAQF 247 >gi|284033600|ref|YP_003383531.1| dimethyladenosine transferase [Kribbella flavida DSM 17836] gi|283812893|gb|ADB34732.1| dimethyladenosine transferase [Kribbella flavida DSM 17836] Length = 295 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 20/281 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLT 67 ++++ + + P K GQNF++D N +++I ++ LD G TV+EIG G G+LT LL Sbjct: 20 VRSLAASLGLRPTKQRGQNFVIDPNTVRRIVRAA-ELDPAGETVLEIGPGLGSLTLALLA 78 Query: 68 LGARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 G R V +E D L I+S P +R +++ DA+ V E I +P +A Sbjct: 79 EGHR-VTAVEIDPLLAAALPATIASYAPAQADRFTVVEADAMAVQAEA---IGTPTACVA 134 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + ++ P L ++ Q EV +R+ A S YG S W + Sbjct: 135 NLPYNVAVPVLLHLLA--IAPSLRHGL-VMVQSEVADRLAAPPGSRTYGVPSAKAAWYAE 191 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLK 242 I +VF+P+P V S ++ F P + + + + AF +RRKT+R +L Sbjct: 192 VRRAGPIGRNVFWPAPNVDSGLVAFARREPPATSASRQEVFAVIEAAFSQRRKTIRSALA 251 Query: 243 RLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 R + +L AG++ LR E L I DF + D Sbjct: 252 RWVPDRPTLDAVLAAAGVDPGLRGEMLGIADFAALAGARHD 292 >gi|253581082|ref|ZP_04858342.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847618|gb|EES75588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 290 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 20/280 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y +K GQNFL+D ++L KI +S+ V+EIG G G +TQ L AR+ Sbjct: 15 VLQKYNFAFQKRFGQNFLIDTHVLDKIIDSAQITKDDFVLEIGPGIGTMTQYLAEA-ARE 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129 V +E D+ PIL D N + +I +D LKVD + N PI+++ANLPY I Sbjct: 74 VAAVEIDKTLLPILDDTLKDWDN-VTVINNDILKVDIRQLALEKNQGRPIKVVANLPYYI 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ +S+T++ QKEV +R+ + YG LS+ + K ++ + Sbjct: 133 TTPIIMGLFENQVP---VDSITIMVQKEVADRMQVGPGTKDYGALSLAVQYYAKPKIVAN 189 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK---- 242 + P+ F P PKV S VI + P P +++ K +I + +F +RRKTL LK Sbjct: 190 VPPNCFMPRPKVGSAVIRLERYEKP-PVEVKNEKLMFRIIRASFNQRRKTLVNGLKNSQE 248 Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + E L G+ ++R E L++ F ++ N T+ Sbjct: 249 IPFSKEQIEQALGMCGLSLSVRGEALTLAQFAQLANAFTE 288 >gi|317495931|ref|ZP_07954294.1| dimethyladenosine transferase [Gemella moribillum M424] gi|316914108|gb|EFV35591.1| dimethyladenosine transferase [Gemella moribillum M424] Length = 286 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 134/268 (50%), Gaps = 16/268 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + KK +GQNFL+D NIL +I + +G + + VIEIG G G+LT+ + A+K Sbjct: 11 ILKKHGFTFKKSLGQNFLIDANILNRIIDGAGINETVGVIEIGPGIGSLTEAIAK-KAKK 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128 VI E D + PIL + + + N +EII +D LKVD + + I ++ANLPY Sbjct: 70 VISFEIDGRLLPILSETLADY-NNVEIINNDILKVDVDNIIAEKMSDCDKIMVVANLPYY 128 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L + I + ++ Q+EV R+ A+ + Y L++L + T +F Sbjct: 129 ITTPILTHLIENTEK---IDGYVVMMQREVANRLNAKVGTKDYNSLTILLNYYTDVEYLF 185 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241 + VF P+P V S V+ + + K + F +RRKTL +L Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKEKKEFEVDQKFFKFVRSCFVQRRKTLLNNLISSYGKD 245 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269 K+ + + IE R+E L++ +F Sbjct: 246 KKQDLQASCFDSEIEATRRSETLTLTEF 273 >gi|315607755|ref|ZP_07882748.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574] gi|315250224|gb|EFU30220.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574] Length = 317 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 135/264 (51%), Gaps = 19/264 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DLNI ++IA++ + G+ V+EIG G G LTQ L+T R+V +E D+ Sbjct: 54 PKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEIDR 112 Query: 81 QFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L + + H N II +D L++D F P + N PY+I +++ F + Sbjct: 113 ESVAYLHETFPTLHDN---IIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQIFFKMLD 168 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV R+ ++ + YG LSVL +F + VF P P Sbjct: 169 NRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDEDVFNPPP 225 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL------GGENLLHQ 252 KV S VI + + + C K++ + F +RRK LR SLK+L GE Sbjct: 226 KVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSGE--FFT 283 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 A + T R E L+I F +TN++ Sbjct: 284 AEVMTR-RPEQLTIAQFVELTNVV 306 >gi|225734155|pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution gi|225734156|pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom Resolution gi|225734157|pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna gi|225734160|pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna And Sah Length = 249 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 16/258 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+ L+ +LKKIAE +G TV+E+G G GNLT++LL +K+ VIE D++ Sbjct: 6 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK I + RLE+I +DA K F ++ ++++ NLPYN+ + ++ N + Sbjct: 66 MVENLKSIGDE---RLEVINEDASKFP---FCSLGKELKVVGNLPYNVASLIIENTVYNK 119 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + QKEV E++ +K++ G LSV + + P F P PKV Sbjct: 120 DCVPLA---VFMVQKEVAEKLQGKKDT---GWLSVFVRTFYDVNYVMTVPPRFFVPPPKV 173 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S VI + + L++ KK + F RRK LR+ + E LL +AGI + R Sbjct: 174 QSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINPDARV 229 Query: 262 ENLSIEDFCRITNILTDN 279 E LS+EDF ++ ++ D+ Sbjct: 230 EQLSLEDFFKLYRLIEDS 247 >gi|194246621|ref|YP_002004260.1| dimethyladenosine transferase [Candidatus Phytoplasma mali] gi|193806978|emb|CAP18413.1| Dimethyladenosine transferase (high level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Candidatus Phytoplasma mali] Length = 269 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 134/263 (50%), Gaps = 20/263 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D+N+LKKI + +L V+EIG G G LTQ ++ L ++K + E D+ Sbjct: 5 KKKYGQNFLSDINLLKKIV-NEANLKNKNVVEIGPGKGALTQFII-LQSKKFLAYEIDET 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNI--SSPIRIIANLPYNIGTRLLFNWI 138 P L + N +II DD LK + E FFN I +I NLPY I T L+F ++ Sbjct: 63 LKPFL---IFEKSNNFKIIYDDFLKRNLKEDFFNYFGEEKITLIGNLPYYITTPLIFKFL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S T++ QKEVG R+ A+ N+ HY LSV+ + TK + ++ ++F P Sbjct: 120 EEKQI----NSFTIMLQKEVGLRLLAKPNTKHYNALSVIIQFLTKIKKILEVKKNMFKPK 175 Query: 199 PKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR------LGGENLL 250 PKV S V+ F N + + +F ++RKTL +L + Sbjct: 176 PKVDSIVLKFDKKNQKNLTINFKNNFFIFVKISFSQKRKTLINNLVKGYKINKKKIIIFF 235 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 I+ ++RAE +SIE F I+ Sbjct: 236 DNNNIQYHIRAEQISIELFKEIS 258 >gi|15606866|ref|NP_214246.1| dimethyladenosine transferase [Aquifex aeolicus VF5] gi|27151558|sp|O67680|RSMA_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2984099|gb|AAC07637.1| dimethyladenosine transferase [Aquifex aeolicus VF5] Length = 248 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 16/258 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+ L+ +LKKIAE +G TV+E+G G GNLT++LL +K+ VIE D++ Sbjct: 5 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK I + RLE+I +DA K F ++ ++++ NLPYN+ + ++ N + Sbjct: 65 MVENLKSIGDE---RLEVINEDASKFP---FCSLGKELKVVGNLPYNVASLIIENTVYNK 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + QKEV E++ +K++ G LSV + + P F P PKV Sbjct: 119 DCVPLA---VFMVQKEVAEKLQGKKDT---GWLSVFVRTFYDVNYVMTVPPRFFVPPPKV 172 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S VI + + L++ KK + F RRK LR+ + E LL +AGI + R Sbjct: 173 QSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINPDARV 228 Query: 262 ENLSIEDFCRITNILTDN 279 E LS+EDF ++ ++ D+ Sbjct: 229 EQLSLEDFFKLYRLIEDS 246 >gi|317153209|ref|YP_004121257.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2] gi|316943460|gb|ADU62511.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2] Length = 261 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 131/265 (49%), Gaps = 14/265 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+K KK +GQNFL D NI ++I ++ T+IEIG G G LT + + V Sbjct: 7 HHKA--KKSLGQNFLTDQNICRRIVDAIAPGPTDTIIEIGPGQGALTGFIAQAHPARFSV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D + + +P+ +E+I+ DAL+ +E N +I+ NLPYN+G++L++ Sbjct: 65 IELDDG---LADRLEGAYPD-IEVIRADALRFPWES-LNAGERCKIVGNLPYNVGSKLIW 119 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + +S + + Q EV R+TA+ YG L+ +F + P VF Sbjct: 120 DIVSRVQ---TLDRAVFMVQHEVALRLTAEPGCKAYGGLTAWVRNFADTRYLFKVPPTVF 176 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLH 251 P PKV S V+ F+P + P ++L ++ + F KRRK L LK L EN Sbjct: 177 RPQPKVDSAVVAFVPRPVGEWPRSPQALDRLIKMLFQKRRKQLSNILKPLWSQEIENWFA 236 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 GI R E LS + F ++ ++ Sbjct: 237 SQGISPMARPETLSPQQFLELSALI 261 >gi|311086456|gb|ADP66537.1| dimethyladenosine transferase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 220 Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 14/211 (6%) Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIG 130 ++IVIE DQ +LK S ++L + +AL +F F+ IRI NLPYNI Sbjct: 7 ELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLIRIFGNLPYNIS 64 Query: 131 TRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 T L LF I + + + QKEV ER+ + + YGRLS+++ + ++ Sbjct: 65 TSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKIL 118 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 ++SP F P PKV S I+ PH N + L IT++AF RRK LR SLK L Sbjct: 119 LNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLF 178 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L + I +NLRAEN+S+ +C++ N L Sbjct: 179 SEKELIKLEINSNLRAENISVSQYCKLANYL 209 >gi|225850076|ref|YP_002730310.1| dimethyladenosine transferase [Persephonella marina EX-H1] gi|254807878|sp|C0QUE5|RSMA_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225645312|gb|ACO03498.1| dimethyladenosine transferase [Persephonella marina EX-H1] Length = 265 Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 14/255 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK GQ+ L+ +++KI E + TV+EIG G G LT+ +L + V IE D+ Sbjct: 6 PKKRFGQHLLISKGVIQKIVECLDIKEDDTVVEIGVGTGQLTEEILRRNPKIVYGIEIDK 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +PI+++ N + +I++D VD K I++ NLPYN+ + +L N Sbjct: 66 TVYPIIEERFKDFKNFV-LIKEDFFDVDLRKL--TDGKIKLTGNLPYNVASHILVN---T 119 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + + QKEV +++ + + Y +SV + + F P PK Sbjct: 120 AFYIDILQLAVFMIQKEVAQKLVGKPKTKDYTFMSVFLQTFFDIDYVMSVPARFFSPPPK 179 Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 VTS VI IP +P L+ +KK F RRK LR + + ++L +AGI+ Sbjct: 180 VTSAVIRMIPK-EKLPVSLDHMKKYKNFVSMLFSNRRKMLRSKIDK----DILERAGIDP 234 Query: 258 NLRAENLSIEDFCRI 272 RAE LS++DF R+ Sbjct: 235 KARAEELSVDDFIRL 249 >gi|212278077|gb|ACJ23053.1| KsgA [Neisseria gonorrhoeae] Length = 248 Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 125/260 (48%), Gaps = 24/260 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IV-------------LVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 109 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 110 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 165 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 166 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 225 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 226 DRAEHIAPEKYVALSNYLAD 245 >gi|16329260|ref|NP_439988.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803] gi|27151564|sp|P72666|RSMA_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|1651740|dbj|BAA16668.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803] Length = 284 Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 141/276 (51%), Gaps = 23/276 (8%) Query: 21 PKKYMGQNFLLDLNILKKI---------AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 P+K GQ++L L+ I A SGSL ++EIG G G LT+ LL G Sbjct: 5 PRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRD-RLLEIGPGMGVLTKQLLATG-N 62 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI-RIIANLPY 127 V+ +E D+ L+ Q N L +++ D L +D F SP+ +++AN+PY Sbjct: 63 PVVAVELDRDLCLKLRKKLGQRENFL-LLEGDVLILDLNALLQDFPQFSPLNKVVANIPY 121 Query: 128 NIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 NI + +L + P P +E++ LL QKE+ ER+TAQ ++ YG LSV + + Sbjct: 122 NITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLARVD 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + D+ P F P PKV S VI P+ + +P L ++ F RRK LR +LK L Sbjct: 182 WIVDVPPKAFTPPPKVDSAVIRLTPYPVEQLPGDRRLLDQLLCLGFANRRKMLRNNLKGL 241 Query: 245 GGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL Q + + RAE+LS+E + +TN+L Sbjct: 242 IAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277 >gi|323490982|ref|ZP_08096176.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2] gi|323395338|gb|EGA88190.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2] Length = 292 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 24/283 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I++ Y + KK +GQNFL+D NIL+KI + IEIG G G LT+ L A Sbjct: 12 QQIMTKYNLKVKKSLGQNFLIDPNILRKIVGQANLTKKSAAIEIGPGIGALTEHL-AREA 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126 KV+ E DQ+ P+L D S + N + I+ D LK D + + I ++ANLP Sbjct: 71 GKVLAFEIDQRLLPVLADTLSPYDN-ISIVHSDILKADVQAAIDSELAGYDDIVVVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + ++ QKEV ERITA+ + YG LS+ + T+A M Sbjct: 130 YYVTTPIILKLLLEKLP---IRGMVVMLQKEVAERITAKPGTKAYGSLSIAIQYYTQAEM 186 Query: 187 MFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + VF P P V S VI +P + I + +T+ +F +RRKT+ +L+ Sbjct: 187 ALTVPKSVFLPQPNVDSAVIRMTKREVPEVEVI--NEDFFFSVTRGSFVQRRKTILNNLQ 244 Query: 243 RL---GGE------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L +A I+ R E L+I++F +++ L Sbjct: 245 VAMPSGKEKKEFILKALEEAEIDPTRRGETLTIKEFGLLSDKL 287 >gi|15828486|ref|NP_325846.1| dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase)(16S rRNA dimethylase)(high level kasugamycin resistance protein KSGA) (kasugamycin dimethyltransferase) [Mycoplasma pulmonis UAB CTIP] gi|27151595|sp|Q98RJ3|RSMA_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|14089428|emb|CAC13188.1| DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N', N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE)(16S RRNA DIMETHYLASE)(HIGH LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN DIMETHYLTRANSFERASE) [Mycoplasma pulmonis] Length = 252 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 131/254 (51%), Gaps = 17/254 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL+D NI+ KI +SS ++ +IEIG G G LT++L+ A KV+ E DQ Sbjct: 3 AKKRFGQNFLIDQNIINKIVDSS-EVENRNIIEIGPGKGALTKILVK-KANKVLAYEIDQ 60 Query: 81 QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 IL + ISS++ +I D LK +F+K S I+AN+PY I + ++F I Sbjct: 61 DMVNILNQQISSKN---FVLINKDFLKEEFDK----SQNYNIVANIPYYITSDIIFKIIE 113 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ TL+ QKEV RI A++N + +LS+ + ++ D+S + F P P Sbjct: 114 N---HQIFDQATLMVQKEVALRILAKQNDSEFSKLSLSVQFFFDVFLICDVSKNSFRPIP 170 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGI 255 KV S VI + N + + + AF RRKTL +LK E Sbjct: 171 KVDSAVIKLVKKKNKDFSLWKEYFEFLKIAFSSRRKTLLNNLKYFFNEQKILKFFELKNY 230 Query: 256 ETNLRAENLSIEDF 269 + +RA+N+ EDF Sbjct: 231 DPKVRAQNIKNEDF 244 >gi|257068507|ref|YP_003154762.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810] gi|256559325|gb|ACU85172.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810] Length = 295 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 136/280 (48%), Gaps = 17/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + I P K GQNF++D N ++ I +G G V+E+G G G+LT LL Sbjct: 15 ARDIRELAEAAGIRPSKQRGQNFVMDPNTVRTIVGRAGVEPGQAVLEVGPGLGSLTLGLL 74 Query: 67 TLGARKVIVIEKDQ---QFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRII 122 G +V+ +E D+ + P+ +R ++ DAL+V + +P ++ Sbjct: 75 EAGG-EVVAVELDRGLAELLPLTLRARGVQEDRFRLVHADALQVTELPALPGAGAPASLV 133 Query: 123 ANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ANLPYN+ T +L + D+ S ++ Q EV +R+TA S YG SV W Sbjct: 134 ANLPYNVATPILLTILERFDSI----RSALVMVQSEVVDRLTAGPGSRTYGGPSVKAAWY 189 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQ 239 +A IS +F+P P V S ++ + H P+ E++ + AF +RRKTLR Sbjct: 190 GRAVHAGRISRQIFWPVPNVDSALVELVRHEEPLGTAAERETVFAVVDAAFAQRRKTLRA 249 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 +L G E +L AGI+ R E L IE+F I Sbjct: 250 ALAGWAGSAARSEQILRGAGIDPGARGETLGIEEFRAIAR 289 >gi|89519294|gb|ABD75772.1| hypothetical protein [uncultured bacterium] Length = 731 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 15/233 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL + ++ ++I ++ G TV+EIG+G G LT+ L+ L +++ +E DQ Sbjct: 25 PKKHLGQHFLTNRSVSRRIVDALRYRPGDTVLEIGSGKGILTEPLMELDI-QLVTVEIDQ 83 Query: 81 QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L D + P+ + +IQDD LKVD ++ P II N PYNI +++ F + Sbjct: 84 ESIRYLLD---KWPDLKGSLIQDDFLKVDLQRI--CGRPFHIIGNFPYNISSQIFFRILE 138 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + S+ + QKEV +RI + S YG LSVL +F + P FFP P Sbjct: 139 ---YRHLVTSVVCMVQKEVADRIASPPGSKEYGILSVLLRAYFDIESLFSVKPGSFFPPP 195 Query: 200 KVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 +VTS VI +PC ++ + F +RRK +R S+K + LLH Sbjct: 196 QVTSGVIRLTRNQTETLPCDEALFFRVVKTLFNQRRKMIRNSIKSI----LLH 244 >gi|218885605|ref|YP_002434926.1| dimethyladenosine transferase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756559|gb|ACL07458.1| dimethyladenosine transferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 270 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 128/257 (49%), Gaps = 18/257 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI KI + VIEIG GPG LT+ + G ++ ++EKD Sbjct: 13 KKSLGQNFLRDRNIAAKIVAALRIGPEDRVIEIGPGPGALTRHIHAAGPAQLFLLEKDYH 72 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + P + + DAL +E+ + S ++I NLPYN+ + L+++ +S Sbjct: 73 WATEHGRTRPAEPPVITPVLTDALLFPWERLTSARS-WKVIGNLPYNVASPLMWDILSTA 131 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + QKEVGERI A S YG LSV M F + P VF P PKV Sbjct: 132 ---PGLARAVFMIQKEVGERIVAAPGSGAYGALSVWLQSFVTPRMEFIVPPQVFVPRPKV 188 Query: 202 TSTVIHFIP------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLHQ 252 S V+ F+P +P L ++ + F +RRK L++ L+ + G+ LL Sbjct: 189 DSAVLSFVPLGAARGRFDP-----ARLSRLLKVCFQQRRKQLQRILRGYVQGDVPALLAG 243 Query: 253 AGIETNLRAENLSIEDF 269 G++ +R E+L+ EDF Sbjct: 244 LGLDPAVRPESLAPEDF 260 >gi|300114051|ref|YP_003760626.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113] gi|299539988|gb|ADJ28305.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113] Length = 264 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 9/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 +K GQ+FL D +++++ + G ++EIG G G LT LL LG + I +++D Sbjct: 9 RKRFGQHFLHDQQVIERLIRAIKPKLGDLMVEIGPGQGALTLPLLHCLGQLEAIELDRDL 68 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + +++ +S+ RL + D+L DF + + +R++ NLPYNI T LLF+ + Sbjct: 69 AAY-LIERCASEGNLRLHNV--DSLTFDFRTLAHDNRRLRVVGNLPYNISTPLLFHLLGQ 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 E + + Q+EV R+ A+ YGRLSV+ + + +F + F P PK Sbjct: 126 VG---ILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSGAFVPPPK 182 Query: 201 VTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ PH + + E+L ++ +AF +RRKTL +LK L L GI+ Sbjct: 183 VDSMVVRLRPHQPSLAPNISHEALNRVVSQAFSQRRKTLANALKGLLSSAELIALGIDPR 242 Query: 259 LRAENLSIEDFCRIT 273 R E +S+E + +T Sbjct: 243 QRPETVSLEHYLALT 257 >gi|89890027|ref|ZP_01201538.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7] gi|89518300|gb|EAS20956.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7] Length = 280 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 140/265 (52%), Gaps = 18/265 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D ++ ++IA+ S DG ++EIG G G LT+ ++ KV +E Sbjct: 18 VTAKKHLGQHFLKDEDVAQRIADVL-SYDGYDQILEIGPGTGVLTKHVIRKNM-KVTALE 75 Query: 78 KDQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D + FP L+ + + ++I+ D LK D ++ + S II N PYNI Sbjct: 76 LDSESVIYLKHSFP-LEHVKIVNDQTFQVIEADFLKKDLKEIYGEQS-FAIIGNFPYNIS 133 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T+++F I P + + FQKEV +RI A S YG LSVL +A +F + Sbjct: 134 TQIVFKTIENREQIPEFGGM---FQKEVAQRICAPHGSKTYGILSVLAQAYYEADYVFTV 190 Query: 191 SPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P VF P P+V S V+ + + + C L+++ + AF +RRKTLR SLK L + Sbjct: 191 GPEVFDPPPRVDSGVLFLKRRDNYDNLTCSYSILRQVVKLAFQQRRKTLRNSLKTLNLPD 250 Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273 + + I +LR E +S++ F + Sbjct: 251 EMREKDI-FSLRPEQISVDAFVELA 274 >gi|329894607|ref|ZP_08270413.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088] gi|328922961|gb|EGG30289.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088] Length = 266 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 10/261 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 YK +K GQNFL D +++ I + ++EIG G G LT L+ +++ I Sbjct: 8 YKHKARKRFGQNFLHDTHVITSIVSAIAPAQDDHIVEIGPGQGALTAELVPY-CQRLDAI 66 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ +L S H + DALK D+ + P+R++ NLPYNI T L+ Sbjct: 67 ELDRDLLTLLLASFSIHKG-FHLHNQDALKTDYRELHQ-GRPLRVVGNLPYNISTPLILK 124 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + Q EV +R+TAQ +S +GRL + + + + D+ P F Sbjct: 125 LFE---YTDIIADMHFMLQSEVVDRLTAQPHSKAWGRLGIAAQYLCRVERIIDVPPEAFD 181 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P + LE L + + ++AF +RRKTLR +LK + + L Sbjct: 182 PAPKVQSAVVKLTPK-DSSKIDLEQLGRLQALVKQAFAQRRKTLRNNLKGVVSDAQLEHF 240 Query: 254 GIETNLRAENLSIEDFCRITN 274 GI+ RAE +S+E + +++ Sbjct: 241 GIDPAARAETISLEQWVALSD 261 >gi|290968589|ref|ZP_06560127.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str. 28L] gi|290781242|gb|EFD93832.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str. 28L] Length = 294 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 13/277 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I+ + + K +GQNFL+ + IAE++ G V+EIG G G LTQ L G Sbjct: 12 VRYIVRRFGLHMNKKLGQNFLIRHEAVAAIAEAAALTPGEQVLEIGPGIGTLTQALAETG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +E D PIL + + N +++I D ++V P + ANLPY I Sbjct: 72 A-AVRAVEVDAGLLPILAKTLAHYDN-VQVIHGDIMRVSIPDIME-HKPFTVCANLPYYI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + P L + QKEV +R+ A S YG LSV + T+A ++F+ Sbjct: 129 TTPIIMQLLE-QRLP--IRRLVFMVQKEVAQRMVAAPGSKVYGALSVAVQYYTQAELLFE 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRLG-- 245 I P F P+P+VTS V+ P E + K+ + AF +RRK R +L+ G Sbjct: 186 IPPQAFMPAPEVTSAVVALQVRTEPPVKVQEEARFFKVVKAAFAQRRKVFRNALQGAGIS 245 Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +L +A I+ R E L +++F + T Sbjct: 246 KETVTRMLREAQIDGERRGETLDLQEFAAVAEAWTKT 282 >gi|94264395|ref|ZP_01288185.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] gi|93455152|gb|EAT05370.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] Length = 304 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 133/278 (47%), Gaps = 24/278 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ILS +K+ P K GQNFL+ + ++I E + TV+E+G G G LT+ L A Sbjct: 23 QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 82 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNI 129 KVI +E D + + P +E+ D L+ D+ I+IIANLPY+I Sbjct: 83 -KVIGLELDAGIVNYHRQ-CGELPANVELRHQDLLQADYPAMAAEQGGKIKIIANLPYSI 140 Query: 130 GTRLLFNWI---SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 LLF + A W + L+ QKEV +R+ A S YG L+ L G Sbjct: 141 TNPLLFRLLVQRQALDW------VVLMIQKEVADRLVAAVGSKEYGVLTALLGACATVER 194 Query: 187 MFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + P FFP PKV S VI PH+ P L+++ AF +RRKTL SL Sbjct: 195 LLAVGPGNFFPRPKVDSVVIRLDFRNFPHV-PDDAEFGRLRRVVDAAFNQRRKTLLNSLS 253 Query: 243 ----RLGGENLLHQAG---IETNLRAENLSIEDFCRIT 273 L E + +++ LRAE L+ DF R++ Sbjct: 254 AGLPELDRETIAAALAAAELDSGLRAERLTTADFRRLS 291 >gi|78357102|ref|YP_388551.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|119365022|sp|Q30ZP0|RSMA_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78219507|gb|ABB38856.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 280 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 126/262 (48%), Gaps = 15/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI KI + VIEIG GPG LT + + ++EKD Sbjct: 21 KKSLGQNFLQDKNISAKIVAALQIGPADCVIEIGPGPGALTDFIQKAAPASLWLLEKDTY 80 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + + S+ P +++ DAL +E+ + S ++I NLPYN+ + L+++ +S Sbjct: 81 WAGEHRRSDSRTPVEKQVVLTDALTFPWERLSDDRS-WKLIGNLPYNVASPLMWDCLSLA 139 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKEVG+RI A S YG LSV T + P VF P PKV Sbjct: 140 A----FSRAVFMIQKEVGDRIVAAPRSRQYGALSVWLQSHTVPRKELIVPPTVFKPRPKV 195 Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAG 254 S V+ F P N P L L KI F +RRK L++ LKR + + Q G Sbjct: 196 DSAVLSFAPLPLSARNFSPGALSVLLKIC---FQQRRKQLQKILKRYWSDAVCGWFEQQG 252 Query: 255 IETNLRAENLSIEDFCRITNIL 276 + R E LS F ++ N+L Sbjct: 253 LPPAARPEELSPNQFQQLANLL 274 >gi|311897999|dbj|BAJ30407.1| putative dimethyladenosine transferase [Kitasatospora setae KM-6054] Length = 294 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 17/278 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K GQNF++D N +++I ++G D V+E+G G G+LT LL Sbjct: 15 AADIRALAEAFGVKPTKQRGQNFVIDGNTVRRIVRAAGVTDEDAVVEVGPGLGSLTLALL 74 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRII 122 + AR V +E D L D + + P + +++ DA++V +P ++ Sbjct: 75 EV-ARHVTAVEIDPVLARHLPDTVRGRMPAKADSFDLVLSDAMEV---TELPGPAPTALV 130 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + + +P +L ++ Q EV +R+ A+ + YG SV W Sbjct: 131 ANLPYNVAVPVLLHML--EHFPSIERTL-VMVQSEVADRLAAKPGNKVYGVPSVKANWYA 187 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+P V S ++ + P + + AF +RRKTLR +L Sbjct: 188 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRDPPATTATRREVFAVVDAAFAQRRKTLRAAL 247 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AGI+ LR E L++E F I Sbjct: 248 AGWAGSPAAAEEALRGAGIDHTLRGEMLTVEQFAAIAE 285 >gi|225872206|ref|YP_002753661.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC 51196] gi|259494240|sp|C1F127|RSMA_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225792765|gb|ACO32855.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC 51196] Length = 283 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 16/281 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 KS + I +K PK +GQNFL+ + I E+ G+L TV+EIG G G +T++L Sbjct: 11 KSREVAAISGKHK--PK--LGQNFLVSEAACRSIVEALGNLGARTVVEIGPGKGAITELL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A ++I IE D++ P L++ ++ + +I+DD L+VD + ++ NL Sbjct: 67 ANR-AERLIAIELDRELAPRLRERFARRET-VTVIEDDVLRVDLSALARPGEKLLVVGNL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + + +L + I + E ++ Q+EV +R+ A S YG LSV + Sbjct: 125 PYYMTSEILLHLIRHEA---AIERAVVMVQREVADRVAAGPGSRDYGLLSVTAQLHARVE 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243 + + P F P P+V STV+ + H ++ + + F ++RKTL +L+ Sbjct: 182 KLLTLPPGAFSPPPEVYSTVLRWTMHSRTDELGVDPTRFTGFLRSCFAQKRKTLGNNLRA 241 Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 E + AG+ +RAE LS+E + L D Sbjct: 242 AKYEPAAIAGAMQSAGVAAGVRAEELSLEALAALWRTLEDR 282 >gi|229495356|ref|ZP_04389091.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC 35406] gi|229317799|gb|EEN83697.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC 35406] Length = 294 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 8/260 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK +GQ+FL + ++ + IAES S I ++EIG G G LT+ LL LG +V +E Sbjct: 32 KVRAKKALGQHFLTNPSVARAIAESVLSWRDIPILEIGPGMGMLTKELLDLGL-EVYALE 90 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLF 135 D + L+ S + + D LK+ ++ +P +I N PYNI +++ F Sbjct: 91 IDTESVEYLQRNFSWFAQGEHLTEGDVLKLPADELIPGQPQTPFVLIGNYPYNISSQIFF 150 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + QKEV ER+TA YG LSVL +F +S F Sbjct: 151 RLLELRDRVPCCAG---MLQKEVAERLTAPPGGRDYGILSVLLRCWYHCEYLFTVSELDF 207 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV V+ I + +P E KK+ + AF +RRKTLR SL+ L E Sbjct: 208 DPPPKVKGGVLRLIRNDRKELPVDEELFKKVVKAAFSQRRKTLRNSLRTLFPEGYDFSDP 267 Query: 255 IETNLRAENLSIEDFCRITN 274 I +LRAE L +ED+ R+T Sbjct: 268 I-FSLRAERLDVEDYIRLTQ 286 >gi|300743832|ref|ZP_07072852.1| dimethyladenosine transferase [Rothia dentocariosa M567] gi|300380193|gb|EFJ76756.1| dimethyladenosine transferase [Rothia dentocariosa M567] Length = 312 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 137/279 (49%), Gaps = 22/279 (7%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ + + I P K +GQNF++D N +++I ++ D TV+EIG G G+LT + L Sbjct: 31 QEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVAAADITDDETVLEIGPGLGSLT-LGLA 89 Query: 68 LGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 AR+V+ +E D QQ + + ++ DALKV +P ++A Sbjct: 90 DAARQVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTELPH----TPDALVA 145 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + + +P +L ++ Q EV +R+ A+ S YG SV W + Sbjct: 146 NLPYNVAVPVLLHLFA--QFPSICHALVMV-QDEVADRLAAKPGSKIYGVPSVKASWYAE 202 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQS 240 I +VF+P+PK+ S ++ F + P P + + + AF +RRKTLR + Sbjct: 203 VFKAGVIGKNVFWPAPKINSGLVGF--RMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAA 260 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 L G E +L +AGI R E L I + RI Sbjct: 261 LASWAGSGARAEVILTEAGITPTERGEKLDIHGYIRIAQ 299 >gi|299141585|ref|ZP_07034721.1| dimethyladenosine transferase [Prevotella oris C735] gi|298576921|gb|EFI48791.1| dimethyladenosine transferase [Prevotella oris C735] Length = 265 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 134/261 (51%), Gaps = 14/261 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL DLNI ++IA++ + I V+EIG G G LTQ L+T R+V +E D++ Sbjct: 7 KKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEIDKE 65 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + +P R II +D L++D K F P + N PY+I +++ F + Sbjct: 66 SVAFLHE---NYPELRDNIIGEDFLRIDLYKVFE-RRPFVLTGNYPYDISSQIFFKMLDY 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + Q+EV R+ ++ + YG LSVL +F + VF P PK Sbjct: 122 KDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPPPK 178 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET-- 257 V S VI + + + + C K++ + F +RRK LR S+K++ + A T Sbjct: 179 VKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLTLD 238 Query: 258 --NLRAENLSIEDFCRITNIL 276 R E LS++ F +TN++ Sbjct: 239 VMTKRPEQLSVQQFVELTNLV 259 >gi|216263454|ref|ZP_03435449.1| dimethyladenosine transferase [Borrelia afzelii ACA-1] gi|215980298|gb|EEC21119.1| dimethyladenosine transferase [Borrelia afzelii ACA-1] Length = 274 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 148/285 (51%), Gaps = 22/285 (7%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ NI +KI ES + + EIG G G Sbjct: 1 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D LK K+ N + I Sbjct: 61 AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENKNI 114 Query: 120 -RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 115 DKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLV 170 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + DI + F+P+PKV ST + IP + I E K+ + F RRK L+ Sbjct: 171 QSHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKHNIKDFKE-FNKLIRTVFSSRRKKLK 229 Query: 239 QSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ K + EN L + + R EN+S+E+F +I+N LT Sbjct: 230 NTIINFITNKAILRENFLKEY---LDKRPENISVEEFIQISNTLT 271 >gi|225848984|ref|YP_002729148.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643260|gb|ACN98310.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 266 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 133/262 (50%), Gaps = 9/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQ+FL +++KKI + + T++EIG G G LT+ +L K+ +E Sbjct: 3 KVKAKKQFGQHFLKSQDVVKKIVDEVDIKEDDTILEIGPGTGILTEEILKRNPNKLYSVE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ +P+L++ ++ N E+++ D V+ ++ S ++++ NLPYN+ + ++ N Sbjct: 63 IDKSLYPLLEEKFKEYKN-FELVKSDIFDVNIKE-IAASKKLKVVGNLPYNVASLIMINC 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + F + QKEV E++ A+ + Y LSV + + F P Sbjct: 121 VFNMEVVDFC---VFMIQKEVAEKLIAKPKTKSYTFLSVFMQTFFDIKYIMSVPARFFSP 177 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS V+ P+ ++ K F RRK +R L +++L +A I+ Sbjct: 178 PPKVTSAVVKLTPYNRFGIKDIKKYKNFVSHLFTDRRKMIRSKL----DQSILEKANIKP 233 Query: 258 NLRAENLSIEDFCRITNILTDN 279 LRAE L++EDF R+ ++ ++ Sbjct: 234 TLRAEELNVEDFVRLFEVVKND 255 >gi|296125514|ref|YP_003632766.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563] gi|296017330|gb|ADG70567.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563] Length = 282 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 20/278 (7%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 L I P K GQNFL D NI IA + G +EIG G G L+ ML+ + Sbjct: 15 LKEKSIFPNKNRGQNFLCDRNIAYNIAYTVPKSYSRGELALEIGGGLGALSSMLIDIYKE 74 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + ++E D + LK + N + II D L D + + N+PYNI + Sbjct: 75 NLTIVEYDNALYNHLK----EKFNNINIIHKDILTFDIS---DSDKQYDVYGNIPYNIAS 127 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ W+ ++ W + Q + ER+TA++N+ +Y L++ + + +++S Sbjct: 128 PIM-EWLLQKSYGK-WNYAVFMVQSDFAERLTAKENTENYSALTLFANFMADVKLEYNVS 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ--------SLKR 243 VF+P PKVTS++I P I ++ K +++ F RRKT++ ++ + Sbjct: 186 KEVFYPIPKVTSSIISITPKETDID-MIDIFKSVSKTLFHNRRKTIKNNFINSPYININK 244 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + +L ++ IE N+R E L+++ +++NIL + D Sbjct: 245 NCIDEILKKSDIEGNVRGETLNLDKVIKLSNILKEYID 282 >gi|221218035|ref|ZP_03589501.1| dimethyladenosine transferase [Borrelia burgdorferi 72a] gi|224533530|ref|ZP_03674119.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a] gi|225549493|ref|ZP_03770459.1| dimethyladenosine transferase [Borrelia burgdorferi 118a] gi|226321214|ref|ZP_03796749.1| dimethyladenosine transferase [Borrelia burgdorferi 29805] gi|221191983|gb|EEE18204.1| dimethyladenosine transferase [Borrelia burgdorferi 72a] gi|224513203|gb|EEF83565.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a] gi|225369770|gb|EEG99217.1| dimethyladenosine transferase [Borrelia burgdorferi 118a] gi|226233382|gb|EEH32128.1| dimethyladenosine transferase [Borrelia burgdorferi 29805] Length = 281 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 24/286 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T++LL + E D ++ IL + + N ++I+ D LK K+ N + Sbjct: 66 LGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L K + DI + F+P+PKV ST + IP I E K+ + F RRK Sbjct: 176 LVQSHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKTNIKNFKE-FNKLVRTVFSNRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ ++ K EN L + + R EN+S+E+F +I+N L Sbjct: 235 LKNTIINFITNKATLRENFLKEY---LDKRPENISVEEFIQISNTL 277 >gi|147676415|ref|YP_001210630.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI] gi|189028813|sp|A5D673|RSMA_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146272512|dbj|BAF58261.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI] Length = 295 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 142/289 (49%), Gaps = 27/289 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I+ + I P+K +GQNFL+DLNI+ KI +++ V+EIG G Sbjct: 10 VREIMRRHGISPRKSLGQNFLIDLNIIDKIIKAADLTPADLVVEIGPGL-GALTARAAAR 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPIR 120 A KV+ +E D+ P L ++ N +EII+ DAL VDF++ F + Sbjct: 69 AGKVLAVEVDRGLLPALAEVLEGAGN-VEIIRGDALDVDFDRLAGEKTDGAFGRGGKKYK 127 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY + T L + + + + + ++ Q EV R+TA + YG LSV + Sbjct: 128 LLANLPYYL-TGPLLLRLLLERFN--FALMVVMVQLEVAFRLTASPGTADYGALSVAVQY 184 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKT 236 T+ ++F + VF+P P V S V+ L P P + ++ + AFG RRKT Sbjct: 185 FTEPKVLFRVPRTVFYPPPGVDSAVVRL--ALRPAPAVTVRNEDVFFQVVRAAFGFRRKT 242 Query: 237 LRQSLKRLG---GE----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L SL G G +L +AGI+ R E LS+ +F I + D Sbjct: 243 LLNSLAASGLGPGREAWLEVLKRAGIDPQRRGETLSLSEFASIADSFLD 291 >gi|224534733|ref|ZP_03675305.1| dimethyladenosine transferase [Borrelia spielmanii A14S] gi|224513981|gb|EEF84303.1| dimethyladenosine transferase [Borrelia spielmanii A14S] Length = 274 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 20/284 (7%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ +I +KI ES + EIG G G Sbjct: 1 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKKNEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D K + NI Sbjct: 61 AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFFKKYPTENKNID--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +VL Sbjct: 116 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKINSKNYSSFTVLVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI + F+P+PKV ST + IP N I E K+ + F RRK L+ Sbjct: 172 SHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSNRRKKLKN 230 Query: 240 SL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ K + EN L + ++ R EN+SIE+F +I+N LT Sbjct: 231 TIINFIANKTILKENFLKEY---SDKRPENISIEEFIQISNTLT 271 >gi|195440550|ref|XP_002068104.1| GK10486 [Drosophila willistoni] gi|194164189|gb|EDW79090.1| GK10486 [Drosophila willistoni] Length = 334 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 150/291 (51%), Gaps = 23/291 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67 +++ ++ YK+ K + QNFL+D + KI +S+G++D V+E+G GPG +T+ +L Sbjct: 20 TIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGTIDRRDIVLEVGPGPGGITRSILR 79 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123 +++I++EKD +F +LK+ + +++I +D L+ + ++ + + + +I Sbjct: 80 RQPQRLILVEKDPRFRETLDLLKECARPLDIQVDIYHEDILRFNMDQHISDTTQRLHLIG 139 Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 NLP+ I TRLL NW + ++ F +TL FQKEV ERI A S RLS+++ Sbjct: 140 NLPFAISTRLLINWYADLSNRRGAFRRQDTCMTLTFQKEVAERICAPLGSEQRCRLSIMS 199 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235 T + F I F P P+V V+ IP P +P + ++++ + F R+K Sbjct: 200 QIWTDPKLKFIIPGKAFVPKPQVDVGVVKLIPLKRPKTQLP--FDLVERVMRHIFSMRQK 257 Query: 236 TLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R+ L+ L +A + +R LS+++ R+ + + Sbjct: 258 YCRRGFSNLLPPELREEQTPELFRRADVVDTMRPFELSVDECVRLAEVYAE 308 >gi|212702270|ref|ZP_03310398.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098] gi|212674333|gb|EEB34816.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098] Length = 272 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 15/266 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL +I +IA D VIEIG GPG LT+ + +++++EKD Sbjct: 10 KKSLGQHFLRHESICNRIASLLLPKDTDNVIEIGPGPGALTRAIEAQPHARLVLLEKDSH 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + + + S R + + DAL+ D+ + +P +II NLPYN+ + ++++ S Sbjct: 70 WAAERQRLGSA---RTQAVLTDALRFDWSRI-TPDNPWKIIGNLPYNVASPMMWDLFSRA 125 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T + QKEVG+R+ A + HYG LSV + M F + P F P PKV Sbjct: 126 T---GLVRAAFMVQKEVGQRLAAGPGNGHYGALSVWVQSFARPCMEFIVGPGAFSPPPKV 182 Query: 202 TSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAGIE 256 S V+ F P L+ P + L + + F +RRK L +R L QAGI Sbjct: 183 DSAVLSFEPLPLDQRPDRPDLLALVIKVCFQQRRKQLGSIARRCPLAPWLSAAIEQAGIT 242 Query: 257 TNLRAENLSIEDFCRITNI---LTDN 279 LR E L++ DF I+ L DN Sbjct: 243 PTLRPEQLTVADFQHISRFGASLLDN 268 >gi|324998153|ref|ZP_08119265.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudonocardia sp. P1] Length = 292 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 19/279 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N +++I +S+G V+E+G G G+LT LL + Sbjct: 15 VRVLADRLGLRPTKKLGQNFVHDANTVRRIVKSAGVGADDVVLEVGPGLGSLTLALLPVA 74 Query: 70 ARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFF------NISSPI 119 AR V VIE D +L + ++ + P +RL + DA++V + + P Sbjct: 75 AR-VHVIEIDPVLAELLPETVAERAPGLADRLTVTGADAMRVSAAELAADAGGARPADPT 133 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 I+ANLPYN+ ++ + ++ P E ++ Q EV +R+ A S YG S Sbjct: 134 AIVANLPYNVAVPVILHLLAEL---PSLERGLVMVQAEVADRLAAGPGSRQYGAPSAKLA 190 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 W A + VF+P P V S ++ F H P + + + AF +RRK LR Sbjct: 191 WYADARRAGPVPRAVFWPVPGVDSGLLAFTRHDPPSGADRAATFAVIEAAFAQRRKALRG 250 Query: 240 SLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 +L G L AGI+ RAE LS+ DF + Sbjct: 251 ALAGWAGSPAAAETALRAAGIDPTTRAERLSVTDFAAVA 289 >gi|38233472|ref|NP_939239.1| dimethyladenosine transferase [Corynebacterium diphtheriae NCTC 13129] gi|62900542|sp|Q6NIA2|RSMA_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|38199732|emb|CAE49392.1| Putative dimethyladenosine transferase [Corynebacterium diphtheriae] Length = 295 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 136/281 (48%), Gaps = 22/281 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N ++ I ++ VIE+G G G+LT LL Sbjct: 15 IRQLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLTLALLDT- 73 Query: 70 ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A+KV +E D QQ + + + Q +RL +I DAL V + +I P ++ANL Sbjct: 74 AQKVTAVEIDPRLAQQLPLTVAERAGQFADRLNLIHKDALTVAPD---DIDHPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P L ++ Q EV +R+ A + YG SV + Sbjct: 131 PYNVSVPVLLHLLQ--IFPTIRRVLVMV-QAEVADRLAADPGNKVYGVPSVKASFYGNVR 187 Query: 186 MMFDISPHVFFPSPKVTSTVIH---FIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQ 239 I +VF+P+PK+ S ++ F P P P + K + AF +RRKTLR Sbjct: 188 RAGSIGKNVFWPAPKIESGLVRIDVFDPEHQPWPVTDDMRKAVFPLIDSAFAQRRKTLRA 247 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 +L G E L AGI+ LR E L I DF R+ + Sbjct: 248 ALSGHFGSGPAAEEALRTAGIDPILRGEKLDIADFVRLARV 288 >gi|146329356|ref|YP_001209814.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A] gi|226730735|sp|A5EY68|RSMA_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146232826|gb|ABQ13804.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A] Length = 263 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 11/257 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+FL D I+ ++ + ++EIG G G LT +L ++ +E D + Sbjct: 8 KRLGQHFLRDEGIITQLLAAIDPKPQQKILEIGPGLGALTLPVLE-RCHELYAVELDHRV 66 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L + ++ L +I+ D L + F + +PIRII NLPYN+ + +LF+ ++ + Sbjct: 67 LQPLSEKAAAV-GILHLIERDILNIHFAEV--APAPIRIIGNLPYNLSSPILFHCVAQRS 123 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + QKEV +RITA ++P YGRLSV+ + +FD+ P F P PKV Sbjct: 124 D---IVDMHFMLQKEVVDRITAPVDTPAYGRLSVMIQLYCQVEALFDVPPEAFAPPPKVN 180 Query: 203 STVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S V+ IP + +ES+ + + AF +RRK LR+SL L ++ Sbjct: 181 SAVVRLIPQTQ-LTWNIESIAHFECVVRSAFSQRRKMLRKSLAAYFEPKELMALDVDPTA 239 Query: 260 RAENLSIEDFCRITNIL 276 RAE + F R+ N L Sbjct: 240 RAETIDGASFARLANAL 256 >gi|15639328|ref|NP_218777.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum str. Nichols] gi|189025570|ref|YP_001933342.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum SS14] gi|27151559|sp|O83357|RSMA_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732635|sp|B2S2T4|RSMA_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|3322613|gb|AAC65323.1| dimethyladenosine transferase (ksgA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018145|gb|ACD70763.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum SS14] gi|291059727|gb|ADD72462.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum str. Chicago] Length = 285 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 21/284 (7%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N + +L L+ + K GQNFLLD + ++ + G V EIGAG G +T + Sbjct: 7 NSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTAL 66 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 L+ + + V E D+ F L+ + H + +I+ D L+ + P ++ N Sbjct: 67 LVQ-NSDFLTVFEIDRGFVQTLRKLFDAH---VRVIEGDVLQ-QWHAAAAQEQPACVLGN 121 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI R + N I + ++ + + QKE+G R+TA Y SVL W+ + Sbjct: 122 LPYNIAARFIGNTIESGY---IFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEV 178 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL- 241 ++ +++P F+P P V S + + N +P C++ +T+ F RRKT+R +L Sbjct: 179 RVIRNVAPVCFWPRPHVVSQAL-VLTKRNAVPSCVDPALFLHVTKTLFSARRKTVRNNLL 237 Query: 242 ---KRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 KR+ G E L +AGI+ RAE LSI DF +++ L Sbjct: 238 TWQKRMPGGAAVCVEELCARAGIDARARAEQLSIYDFITLSDTL 281 >gi|292492136|ref|YP_003527575.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4] gi|291580731|gb|ADE15188.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4] Length = 265 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 14/258 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQ+FL D ++ ++ G ++EIG G G LT LL LG + I +++D Sbjct: 9 RKRFGQHFLHDKQVIDRLHRVINPQPGELMVEIGPGQGALTLPLLRRLGHLEAIELDRDL 68 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWIS 139 + ++++ +S+ L + DAL DF + +R++ NLPYN+ T LLF+ ++ Sbjct: 69 AAY-LVENCASE--GDLHLHNVDALTFDFRTLAREQNQRLRVVGNLPYNVSTPLLFHLLA 125 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 E + + Q+EV R+ A+ YGRLSV+ + +F + P F P P Sbjct: 126 QVE---VLEDMHFMLQREVVVRLAAKPGGKDYGRLSVMVQFYCGVEPLFTVKPGAFMPPP 182 Query: 200 KVTSTVIHFIPH---LNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 KV S V+ PH L P IP +L ++ +AF +RRKTL +LK L G L GI Sbjct: 183 KVDSMVVRLKPHRPSLAPEIPHA--ALNRVVSQAFSQRRKTLANALKGLLGSADLKVLGI 240 Query: 256 ETNLRAENLSIEDFCRIT 273 + R E + +E + +T Sbjct: 241 DPRQRPETVDLEQYLALT 258 >gi|134296900|ref|YP_001120635.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4] gi|166221657|sp|A4JHP7|RSMA_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|134140057|gb|ABO55800.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4] Length = 276 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 31/284 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + G + G ++EIG G G LT+ L+ +V Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIGPVRGQRMVEIGPGLGALTEPLIA----RVAT 62 Query: 76 IEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 E + +D+ + R LE+ DAL DF ++++P +RI+ NLP Sbjct: 63 PESPLHAVELDRDLIGRLQQRFGALLELHAGDALAFDFG---SLAAPGHAPSLRIVGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI + LLF+ + T+ P + Q EV ER+ A+ + + RLSV+ +R Sbjct: 120 YNISSPLLFHLM---TFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQ 239 M D+ P F P PKV S ++ IP+ ++P+ L ++ AF +RRK LR Sbjct: 177 MLDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGELVTAAFSQRRKMLRN 231 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 +L G + RAE++S+ ++ + L +++A Sbjct: 232 TLGAYRDTIDFDALGFDLARRAEDVSVAEYVGVAQALARTRNVA 275 >gi|111115418|ref|YP_710036.1| dimethyladenosine transferase [Borrelia afzelii PKo] gi|123145677|sp|Q0SMR8|RSMA_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110890692|gb|ABH01860.1| dimethyladenosine transferase [Borrelia afzelii PKo] Length = 281 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 24/287 (8%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 ++MN N S+K L KI P+K GQN+L++ NI +KI ES + + EIG G Sbjct: 6 LSMNINYNSITSIKQTLKEKKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPG 65 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G +T +LL + E D ++ IL + + N ++I+ D LK K+ N + Sbjct: 66 LGAMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENK 119 Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +V Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L + DI + F+P+PKV ST + IP + I E K+ + F RRK Sbjct: 176 LVQSHFTVIKIIDIGGNNFYPAPKVKSTTLKLIPKKHNIKDFKE-FNKLIRTVFSSRRKK 234 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L+ ++ K + EN L + + R EN+S+E+F +I+N LT Sbjct: 235 LKNTIINFITNKAILRENFLKEY---LDKRPENISVEEFIQISNTLT 278 >gi|170691411|ref|ZP_02882576.1| dimethyladenosine transferase [Burkholderia graminis C4D1M] gi|170143616|gb|EDT11779.1| dimethyladenosine transferase [Burkholderia graminis C4D1M] Length = 276 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 19/272 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L L Sbjct: 11 HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK+ + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 71 LHAVELDRDLIGRLKN---KFGELLELHAGDALAFDFG---SLAAPGDAPSLRIVGNLPY 124 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R Sbjct: 125 NISSPLLFHLVS---FAPRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 181 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P PKV S ++ IP+ P L ++ AF +RRK LR +L Sbjct: 182 LDVPPEAFQPPPKVDSAIVRMIPYAPHELTPVDERVLGEVVTAAFSQRRKMLRNTLAAFR 241 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ + ++ R+ I+ Sbjct: 242 DRVDFEAIGFDLQRRAEDVPVAEYVRVAQIVA 273 >gi|311113076|ref|YP_003984298.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931] gi|310944570|gb|ADP40864.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931] Length = 312 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 136/279 (48%), Gaps = 22/279 (7%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ + + I P K +GQNF++D N +++I ++ D TV+EIG G G+LT + L Sbjct: 31 QEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVTAADITDDETVLEIGPGLGSLT-LGLA 89 Query: 68 LGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 AR V+ +E D QQ + + ++ DALKV +P ++A Sbjct: 90 DAARHVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTELPH----TPDALVA 145 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + + +P +L ++ Q EV +R+ A+ S YG SV W + Sbjct: 146 NLPYNVAVPVLLHLFA--QFPSICHALVMV-QDEVADRLAAKPGSKIYGVPSVKASWYAE 202 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQS 240 I +VF+P+PK+ S ++ F + P P + + + AF +RRKTLR + Sbjct: 203 VFKAGVIGKNVFWPAPKINSGLVGF--SMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAA 260 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 L G E +L +AGI R E L I + RI Sbjct: 261 LASWAGSGARAEAILTEAGITPTERGEKLDIHGYIRIAQ 299 >gi|222100031|ref|YP_002534599.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359] gi|254808100|sp|B9K8F0|RSMA_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221572421|gb|ACM23233.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359] Length = 260 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 132/265 (49%), Gaps = 24/265 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y I KK++GQ FL D I K+I + + V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGIRLKKHLGQVFLSDDRIAKRIVKEADLKPDDVVVEIGAGAGTLTEELAKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 I E D+ PIL++ S++PN R E DF K ++ ++N+PY++ Sbjct: 66 IAYEIDEGLAPILQERLSKYPNVELRFE---------DFLKARDVPEEAICVSNIPYSVT 116 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 ++ I W ++ ++ QKEVGERI ++ YG LSV+ + +FD+ Sbjct: 117 GPIMEKIIE---WR--FKKAIVMVQKEVGERILSKPGRKSYGYLSVVVQTFYEVRKLFDV 171 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 S F P+P+V S V+ + KK F K+RKTL+ +L+ L Sbjct: 172 SRSYFVPNPEVDSVVVEM--KRKAVEIDFPQFKKFVSMIFSKKRKTLKNNLRPF----LS 225 Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275 G++ + RAE LSIE+ + NI Sbjct: 226 VFEGVDLSRRAEQLSIEEIIELYNI 250 >gi|54026877|ref|YP_121119.1| dimethyladenosine transferase [Nocardia farcinica IFM 10152] gi|62900491|sp|Q5YPY6|RSMA_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54018385|dbj|BAD59755.1| putative ribosomal RNA small subunit dimethyltransferase [Nocardia farcinica IFM 10152] Length = 293 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 139/282 (49%), Gaps = 29/282 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G TV+E+G G G+LT LL + Sbjct: 20 VRALAERFGVRPTKQLGQNFVHDANTVRRIVTAAGVGRADTVLEVGPGLGSLTLALLDV- 78 Query: 70 ARKVIVIEKDQQFFPILKD-----ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRI 121 V+ +E D P+L + ++ + P RL +++DDAL+V +SP + Sbjct: 79 VDSVVAVEID----PVLAEHLPRTVADRAPALAGRLRVVRDDALRVRAADL--PASPTAL 132 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ P + ++ Q EV +R+ A+ S YG SV G+ Sbjct: 133 VANLPYNVAVPVLLHLLAEL---PGLRTALVMVQAEVADRLAAEPGSRVYGVPSVKAGFF 189 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKT 236 + VF+P P+V S ++ ++ P P ++ + I AF +RRKT Sbjct: 190 GTVRRAGAVGTQVFWPVPRVESGLVRVERYVEP-PWPMDEQHRRRVFEIIDAAFAQRRKT 248 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 LR +L G E L AGI+ R E L + R+ Sbjct: 249 LRAALAGWAGSPAEAERRLLAAGIDPTARGETLDTAAYVRLA 290 >gi|121606957|ref|YP_984286.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2] gi|166221686|sp|A1VUN7|RSMA_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120595926|gb|ABM39365.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2] Length = 279 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 34/277 (12%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K I +K GQ+FL D I++ I E+ L G ++EIG G +T+ L+ LG VI + Sbjct: 2 KHIARKRFGQHFLTDRLIIEGIVEAIAPLPGQPMVEIGPGLAAMTRPLVERLGHLTVIEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------------NISSP--IR 120 ++D + + + S +L +I+ D L+VDF + SP +R Sbjct: 62 DRD-----LARQLRSN--PQLTVIESDVLRVDFLQLAEQVQSAGALRGAASQTPSPCKLR 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPYNI T +LF+ + A E + QKEV +R+ A ++ YGRLSV+ W Sbjct: 115 VVGNLPYNISTPILFHLLDAVE---VIEDQHFMLQKEVIDRMVAMPSTSDYGRLSVMLQW 171 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + + P F P P+V S ++ +PH P ++ L ++ + AF +RRK LR + Sbjct: 172 RYAMENVLYVPPQSFDPPPRVDSAIVRMVPHAEPARLDVKLLSELVRVAFSQRRKLLRHT 231 Query: 241 LKRLGGENLLHQA---GIETNLRAENLSIEDFCRITN 274 L G+ L A + RAE + + ++ + Sbjct: 232 L----GQWLEQHAFSGEFDVKRRAEEVPVAEYLALAQ 264 >gi|302336213|ref|YP_003801420.1| dimethyladenosine transferase [Olsenella uli DSM 7084] gi|301320053|gb|ADK68540.1| dimethyladenosine transferase [Olsenella uli DSM 7084] Length = 347 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 39/298 (13%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQML 65 + K++L + + K +GQNFL+ ++ +I + G+ D V+E+G G G LT + Sbjct: 39 RATKSVLDGFGLCTKHRLGQNFLVSDAVIGRILGLAELGTSD--VVLEVGPGIGTLTVAM 96 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------FNI---- 115 L L A V +E D+ P+L ++ R ++ DAL VD I Sbjct: 97 LPL-AGAVCSVEADRSLAPVLAHTCARDSERFSLVLGDALDVDGASLSAELASLGIDGLP 155 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +SP ++++NLPY + ++ P ++ Q EV +R++A+ S YG + Sbjct: 156 ASPNKLVSNLPYQVAATIVLKAFQ---EMPSIRRAVVMVQSEVADRMSARPGSRAYGGYT 212 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLK 223 G T F++ P F P+P V S V+ ++ +P C L S Sbjct: 213 AKLGLYGTVTGRFEVGPGNFMPAPHVDSAVV----RIDRVPACDPQTAEPLDTGRLASCV 268 Query: 224 KITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276 AF +RRKT+R S+ G E L +A IE +RAE LS DF R+ L Sbjct: 269 VAIDAAFAQRRKTIRNSMAASGFERDALDVALAEASIEPTVRAEALSTADFVRLDAAL 326 >gi|54020652|ref|YP_116181.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232] gi|62900495|sp|Q5ZZN4|RSMA_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53987825|gb|AAV28026.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232] Length = 259 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 134/267 (50%), Gaps = 17/267 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +PKK +GQNFL D I +KI E+ L +IEIG G G LT LL A+ V E Sbjct: 3 KPVPKKRLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYE 60 Query: 78 KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ PIL + N+ L II +D L +FE IIANLPY I +++LF Sbjct: 61 IDKNLIPIL---EKKFKNKNLRIINEDFLLAEFES----KEKKTIIANLPYYITSKILFK 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I A+ ++ + L+ Q EV +RI A+ +P Y +LS+ + + K +F + P FF Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAKVRKLFVVGPDSFF 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252 P PKV S V+ F N +E+ T+ F +RKTL + L + E + + Sbjct: 171 PKPKVNSAVVSFDFRANLDAKEMENFFWFTKRCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257 >gi|311740851|ref|ZP_07714678.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304371|gb|EFQ80447.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 20/279 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I+P K +GQNFL D N +++I ++ V+E+G G G+LT + L Sbjct: 29 IRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELEPTDRVLEVGPGMGSLT-LGLVEA 87 Query: 70 ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V +E D + L D + ++ RL +++ DAL+V +++ P ++ANL Sbjct: 88 VGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVANL 144 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +T+P L ++ Q EV +R+ AQ S YG SV G+ K + Sbjct: 145 PYNVAVPVLLHLL--ETFPSIRRVLVMV-QLEVADRLAAQPGSKVYGVPSVKAGFYGKVS 201 Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 I +VF+P+P + S ++ + P P ES K + AF +RRKTLR +L Sbjct: 202 KAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRAKVWPVIDAAFAQRRKTLRAAL 261 Query: 242 KRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275 G L A I+ R E L++EDF R+ I Sbjct: 262 SGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLAGI 300 >gi|281425444|ref|ZP_06256357.1| dimethyladenosine transferase [Prevotella oris F0302] gi|281400437|gb|EFB31268.1| dimethyladenosine transferase [Prevotella oris F0302] Length = 265 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 134/261 (51%), Gaps = 14/261 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL DLNI ++IA++ + I V+EIG G G LTQ L+T R+V +E D++ Sbjct: 7 KKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEIDKE 65 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + +P R II +D L++D K F P + N PY+I +++ F + Sbjct: 66 SVAFLHE---NYPELRDNIIGEDFLRMDLCKVFE-RRPFVLTGNYPYDISSQIFFKMLDY 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P T + Q+EV R+ ++ + YG LSVL +F + VF P PK Sbjct: 122 KDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPPPK 178 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET-- 257 V S VI + + + + C K++ + F +RRK LR S+K++ + A T Sbjct: 179 VKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLTLD 238 Query: 258 --NLRAENLSIEDFCRITNIL 276 R E LS++ F +TN++ Sbjct: 239 VMTKRPEQLSVQQFVELTNLV 259 >gi|261880118|ref|ZP_06006545.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361] gi|270333202|gb|EFA43988.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361] Length = 269 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 134/271 (49%), Gaps = 26/271 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ PKK +GQ+FL DLNI K+IA++ I V+EIG G G LTQ L+ R+V +E Sbjct: 5 KVKPKKNLGQHFLTDLNIAKRIADTVDVCPEIPVLEIGPGMGVLTQYLVE-KPREVKAVE 63 Query: 78 KDQ-------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D + FP L+D II D L+++ + F P + N PY+I Sbjct: 64 IDSESVTYLNEHFPKLRD---------NIIAADFLRMNLNEVFG-GRPFVLTGNYPYDIS 113 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 +++ F + P T + Q+EV R+ + + YG LSVL +F + Sbjct: 114 SQIFFKMLDYKDLIP---CCTGMIQREVALRMASAPGNKAYGILSVLIQAWYDVEYLFTV 170 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENL 249 S VF P PKV S VI + C E+L K++ + F +RRK LR SLK+L + Sbjct: 171 SEGVFNPPPKVKSAVIRMTRNAVVELGCDEALFKRVVKATFNQRRKMLRVSLKQLFSKET 230 Query: 250 LHQAGIETN----LRAENLSIEDFCRITNIL 276 + T+ +R E L I+ F +TN++ Sbjct: 231 MPAPVFFTHEMMTMRPEQLCIQQFVELTNMV 261 >gi|145219843|ref|YP_001130552.1| dimethyladenosine transferase [Prosthecochloris vibrioformis DSM 265] gi|145206007|gb|ABP37050.1| dimethyladenosine transferase [Chlorobium phaeovibrioides DSM 265] Length = 270 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 135/255 (52%), Gaps = 13/255 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +I KK +GQNFL D NI +KI +SG+L ++EIG G G LT+ + L Sbjct: 7 HTEIAVKKKLGQNFLTDSNITRKIVAASGALPTERILEIGPGFGALTKEISALTPH-FTA 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +EKD+ I ++P+ L++I+ D L +D E+ + P+R++ N+PY+I T ++F Sbjct: 66 VEKDRALAAF---IRREYPS-LQMIEADFLDLDLEE-LSTDGPLRVLGNIPYSITTPIIF 120 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + A S TL+ Q EV R+TA+ ++ YG L+V +F + VF Sbjct: 121 KLLEARHN---ILSATLMMQHEVALRLTAKPSTKEYGILAVQLQSFCTVRYLFKVGRKVF 177 Query: 196 FPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P P V S VI P +P+ L + ++ + AF +RRKTL +L+ +L Sbjct: 178 KPQPNVDSAVISMTPKKESPVENPL-AYRQFVRTAFHQRRKTLLNNLR--DSYDLSSLTP 234 Query: 255 IETNLRAENLSIEDF 269 LRAE LSIE+F Sbjct: 235 ETLKLRAEALSIEEF 249 >gi|296161013|ref|ZP_06843824.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1] gi|295888712|gb|EFG68519.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1] Length = 277 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 25/278 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L L Sbjct: 11 HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK ++ + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 71 LHAVELDRDLIGRLK---TKFGDLLELHAGDALAFDFG---SLAAPGDKASLRIVGNLPY 124 Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 NI + LLF+ + F + + Q EV ER+ A+ + + RLSV+ +R Sbjct: 125 NISSPLLFHLTA------FAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVI 178 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242 D+ P F P PKV S ++ IP+ L+ +P E L ++ AF +RRK LR +L Sbjct: 179 DKQLDVPPEAFNPPPKVDSAIVRMIPYELHELPAVDERVLGELVTAAFSQRRKMLRNTLA 238 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ + ++ R+ I+ N+ Sbjct: 239 AYRDSVDFEGLGFDLQRRAEDVPVSEYVRVAQIVAANK 276 >gi|262164104|ref|ZP_06031843.1| dimethyladenosine transferase [Vibrio mimicus VM223] gi|262027632|gb|EEY46298.1| dimethyladenosine transferase [Vibrio mimicus VM223] Length = 232 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKV 107 ++EIG G G +T+ + K VIE D+ L++ HP ++L I + DA++ Sbjct: 1 MVEIGPGLGAITEPV-GREVDKFTVIELDRDLAERLRN----HPELASKLTIHEGDAMRF 55 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 DF++ ++ +R+ NLPYNI T L+F+ + + + QKEV R+ A Sbjct: 56 DFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPG 112 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKI 225 S YGRL+V+ + K + ++ P F P PKV S V+ +P+ + P P LE L ++ Sbjct: 113 SKAYGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRV 172 Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +E F +RRKT+R K L L GI +R ENL++ F + N L Sbjct: 173 VREGFNQRRKTVRNCYKGLVEPETLEALGINPGMRPENLTLAQFVALANWL 223 >gi|300172804|ref|YP_003771969.1| dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811] gi|299887182|emb|CBL91150.1| Dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811] Length = 295 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 148/282 (52%), Gaps = 28/282 (9%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL+ Y + KK GQNFL DL++L I +++ + VIEIG G G+LT+ + A Sbjct: 14 QAILNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLTEQI-ARAA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126 +KV+ E D Q +L + + N +++I D L+++ + F ++ ++++ANLP Sbjct: 73 KKVLAFEIDTQMVKVLGETLKDYDN-VKVISGDILEMNLPQIITEEFGETAHVKVVANLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +L + + W+++ ++ Q+EV +R+ A+ + YG L++ + A + Sbjct: 132 YYITTPILMQLLRTNIT---WDNIVVMMQREVADRLNAEVGTKAYGVLTLTVQYFANAQL 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLK 242 ++ F P+PKV S V+ P +P + E L + + +F RRK+L ++ Sbjct: 189 AIEVPATAFNPAPKVESAVVKLTPL---VPQVIVDQPERLFGVIKGSFSHRRKSLWNNML 245 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNI 275 + G++ L QA I+ ++RAE L D ++T + Sbjct: 246 QTYGKDTYIKEKITAALKQATIDPSIRAERL---DLTQLTTL 284 >gi|299531916|ref|ZP_07045316.1| dimethyladenosine transferase [Comamonas testosteroni S44] gi|298720091|gb|EFI61048.1| dimethyladenosine transferase [Comamonas testosteroni S44] Length = 253 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 132/269 (49%), Gaps = 26/269 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQNFL D I+ I ++ G ++EIG G L+Q L+ LG VI + Sbjct: 2 KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLGKLTVIEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 ++D L+D L++++ D LKVDF + +R++ NLPYNI + +L Sbjct: 62 DRDLAARLRLRD-------DLDVVESDVLKVDFRALAARLGVTKLRVVGNLPYNISSPIL 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV +R+ A + YGRLSV+ WR + + P Sbjct: 115 FHLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGS 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------KRLGGEN 248 F P PKV S V+ IP P + L+++ Q AF +RRK LR +L K GE Sbjct: 172 FNPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEAKGFAGEF 231 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L + RAE + + +F + L+ Sbjct: 232 DLQR-------RAEEVPVAEFEALAAQLS 253 >gi|188584688|ref|YP_001916233.1| dimethyladenosine transferase [Natranaerobius thermophilus JW/NM-WN-LF] gi|254807876|sp|B2A3L9|RSMA_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|179349375|gb|ACB83645.1| dimethyladenosine transferase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 302 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 30/289 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L Y+I PKK +GQNFL+D NI++KI ++ + V+EIG G G LT+ ++ + Sbjct: 12 LLKRYEIHPKKSLGQNFLVDGNIIQKIIAAAELKEQDIVLEIGPGLGTLTRD-MSFYVNE 70 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP----------- 118 + IE DQ+ IL++ N + II +DALK+D+++ F SP Sbjct: 71 IFAIELDQRMIDILQETVGSCDN-VNIIHNDALKLDYQELISDFIEFSPAQLQCKSKQIN 129 Query: 119 ---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 ++ ++NLPY I + L+ ++ + P + L+ Q+EV +R TA S +YG ++ Sbjct: 130 PKNLKAVSNLPYYIASPLVLK-LAKEKVP--LSVMVLMVQREVADRFTASPGSKNYGAVT 186 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKR 233 VL + +F++ VF+P P+V S V+ E K +AF R Sbjct: 187 VLLDCFYEVEGVFNVPKTVFYPQPRVESQVVKLTKRSEAKINDDYQEDFIKFVNQAFNSR 246 Query: 234 RKTLRQS-LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 RKTL + L GE +L G +R E L++++F +I I+ Sbjct: 247 RKTLVNNILSIFTGEKSELSQILENNGFSAGIRGEQLTVDEFAQIFKII 295 >gi|255325442|ref|ZP_05366546.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum SK141] gi|255297528|gb|EET76841.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum SK141] Length = 300 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 22/280 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTL 68 ++ + I+P K +GQNFL D N +++I ++ LD V+E+G G G+LT + L Sbjct: 29 IRALAEKLDIVPTKKLGQNFLHDPNTIRRIV-AAAELDPTDRVLEVGPGLGSLT-LGLVE 86 Query: 69 GARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 V +E D + L D + ++ RL +++ DAL+V +++ P ++AN Sbjct: 87 AVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVAN 143 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + +T+P L ++ Q EV +R+ AQ S YG SV G+ K Sbjct: 144 LPYNVAVPVLLHLL--ETFPSIRRVLVMV-QLEVADRLAAQPGSKVYGVPSVKAGFYGKV 200 Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQS 240 + I +VF+P+P + S ++ + P P ES K + AF +RRKTLR + Sbjct: 201 SKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRSKVWPVIDAAFAQRRKTLRAA 260 Query: 241 LKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275 L G L A I+ R E L++EDF R+ I Sbjct: 261 LSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLAGI 300 >gi|170762429|ref|YP_001752686.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920250|ref|ZP_02931616.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508664|ref|ZP_02958159.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701740|ref|ZP_02971428.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|27151612|sp|Q9PPN8|RSMA_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028824|sp|B1AJP2|RSMA_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|168828006|gb|ACA33268.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902651|gb|EDT48940.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676132|gb|EDT88037.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701010|gb|EDU19292.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 277 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 18/283 (6%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 NKS +K L +P K MGQNFLL NI KI + + ++EIG G G +T++ Sbjct: 2 NKSF-IKNKLKQESFVPSKKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEI 60 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI-- 119 L+ +I IE D++ + LK + + II +D L VD + +N + I Sbjct: 61 LVQ-KTNILIAIELDKRLYAHLK--TYIKTSNFHIINNDVLCVDLDNLILDYNNTQKIQK 117 Query: 120 -RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +++ANLPY I ++++ I + + ++ QKE+ ERI A+ N+ Y +VL Sbjct: 118 IKVVANLPYAISSKIVLKIIQSKLINDAY----IMVQKEMAERIGAKVNTRGYNAFTVLV 173 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 K ++F+++ F P PKV S VIH N + +E L K + F +RK L+ Sbjct: 174 QLFCKTKILFEVNAKEFHPQPKVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLK 233 Query: 239 QSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277 +L + +++Q ++ NLRAEN+ + F ++ N L Sbjct: 234 NNLSNIYDIKIINQMFIDYNLDMNLRAENIEPKMFLKLFNYLN 276 >gi|312133647|ref|YP_004000986.1| ksga [Bifidobacterium longum subsp. longum BBMN68] gi|311772906|gb|ADQ02394.1| KsgA [Bifidobacterium longum subsp. longum BBMN68] Length = 307 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLVD 248 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302 >gi|325286669|ref|YP_004262459.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga lytica DSM 7489] gi|324322123|gb|ADY29588.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga lytica DSM 7489] Length = 286 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/266 (34%), Positives = 135/266 (50%), Gaps = 14/266 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D I ++IAE+ VIEIG G G LT+ +L +I ++ D + Sbjct: 25 KKHLGQHFLTDEAIAQQIAETLTHNGYTNVIEIGPGTGVLTKYILKHDLN-LIAMDLDTE 83 Query: 82 FFPIL-KDISSQHP---NR---LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 L ++ +HP NR ++++ D LK D F I N PYNI T+++ Sbjct: 84 SIAYLNQNFLLEHPELLNRKGTFKVVEADFLKQDLTTIFG-DEQFAISGNFPYNISTQIV 142 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + P T +FQKEV ERI +++ S YG LSVLT A +F + P V Sbjct: 143 FKTLEHKQQIP---EFTGMFQKEVAERICSKEGSKAYGILSVLTQAYYHAEYLFTVPPTV 199 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S V+ N I + L ++ + F +RRKT+R SLK + L + Sbjct: 200 FNPPPKVDSGVLRLTRKENLDIGVDEKLLYRVVKAVFNQRRKTIRNSLKTFELSDNLKED 259 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I R E L++EDF +T + ++ Sbjct: 260 PI-FGKRPEQLAVEDFVALTKKIAND 284 >gi|262201474|ref|YP_003272682.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247] gi|262084821|gb|ACY20789.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247] Length = 305 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 19/277 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I SG V+E+G G G+LT LL Sbjct: 34 IRQLAAEVGVRPTKTLGQNFVHDANTVRRIVAESGVGADDVVLEVGPGLGSLTLALLEQA 93 Query: 70 ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 R V+ +E D Q+ + + ++ E+I DAL+V + +P ++ANL Sbjct: 94 GR-VVAVEIDPVLAQRLPRTIAERAAARQGDFEVITADALRVTRDDL--PVAPTALVANL 150 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + ++ +P +L ++ Q EV +R+ A+ S YG SV + Sbjct: 151 PYNVAVPVLLHLLA--VFPEIRTAL-VMVQAEVADRLAAEPGSRTYGVPSVKARYHGTVR 207 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLK 242 + VF+P PKV S ++ I + P E ++ + AF +RRKT+R +L Sbjct: 208 RAGAVGRSVFWPEPKVESGLVR-IERTDTYPVDDELRGAVFAVVDAAFAQRRKTMRSALA 266 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AGI+ +R E L + DF R+ Sbjct: 267 GWAGSPAEAERRLRAAGIDPGIRGERLGVADFVRLAQ 303 >gi|212278081|gb|ACJ23055.1| truncated KsgA [Neisseria gonorrhoeae] Length = 249 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 125/253 (49%), Gaps = 13/253 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+PK Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236 Query: 259 LRAENLSIEDFCR 271 RAE+++ E R Sbjct: 237 DRAEHIAPEKLWR 249 >gi|227547072|ref|ZP_03977121.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212489|gb|EEI80378.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 321 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 28 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 88 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 202 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 203 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 262 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 263 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316 >gi|328773161|gb|EGF83198.1| hypothetical protein BATDEDRAFT_85801 [Batrachochytrium dendrobatidis JAM81] Length = 326 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 145/315 (46%), Gaps = 50/315 (15%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS--LDGITV-IEIGAGPGNLTQMLL 66 L ++S Y + KK +GQNFLL + IA+ + + DG T+ +E+G GPG LT+ LL Sbjct: 6 LPQLISIYNVHAKKALGQNFLLRPGVTDSIAQHAVAKKRDGKTLHVEVGPGPGGLTRSLL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----------I 115 LG ++ +EKD P+L+ + + P+R + D L+ D + FN + Sbjct: 66 KLGVTHLVAVEKDASVAPMLQILQASVPSRFRFLLGDMLESDQQVLFNQIMTEAVECDRL 125 Query: 116 SSP--------------IRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQK 156 S P + I+ NLPY+I + LL WI + S +TL+ Q+ Sbjct: 126 SQPNSNSNPDNQPHFDKVHIVGNLPYSISSPLLHMWIKQAATEKYLFSFPKTEMTLMLQR 185 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EV ERI A + GRLSVL M+ + +F P PKV ++ F PH Sbjct: 186 EVCERIAAPVGTKVRGRLSVLCQAFFDVKMLSVVDRKLFRPVPKVDGGILQFKPHAE--- 242 Query: 217 CCLESLKKITQEAFGKRRKTL--------RQSLKR--LGGE-NLLHQAGIETNLRAENLS 265 LK + E F K L R LKR LG ++L + GI+ R+ + Sbjct: 243 ---NRLKDVPYETFAHLVKVLHHHPNSMIRAILKRHNLGKVIDVLTECGIDPTSRSFMVD 299 Query: 266 IEDFCRITNILTDNQ 280 ++ + R+ T ++ Sbjct: 300 VDSYIRLARRCTHDR 314 >gi|238020848|ref|ZP_04601274.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147] gi|237867828|gb|EEP68834.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147] Length = 257 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 126/262 (48%), Gaps = 17/262 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 +K GQNFL D I+ I + VIEIG G +T+ L L V I++D Sbjct: 7 RKRFGQNFLQDTRIITDIVNAVRPQADDIVIEIGPGLAAITEPLARKLNQLHVCEIDRD- 65 Query: 81 QFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 I+ + Q N+L I + D L DF +I+ +I+ NLPYNI T LLF Sbjct: 66 ----IINHLKKQPFANKLVIHEGDVLNFDFR---SIAGRKKIVGNLPYNISTPLLFKLAE 118 Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 AD + + QKEV ER+ A + YGRLSV+ + + D+ P F P+ Sbjct: 119 VADEVI----DMHFMLQKEVVERMVAAPKTNDYGRLSVMLQYFFDMESLIDVPPESFIPA 174 Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP I + + + AF +RRKTLR +LK + + L GI Sbjct: 175 PKVDSAVVRMIPVAGRIGIARDFARFADLVRLAFHQRRKTLRNNLKGVASDEDLQAVGIL 234 Query: 257 TNLRAENLSIEDFCRITNILTD 278 RAE ++ E + ++N L D Sbjct: 235 PAQRAEEVAAEKYVALSNWLAD 256 >gi|225618959|ref|YP_002720185.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae WA1] gi|225213778|gb|ACN82512.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae WA1] Length = 281 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 I P K GQNFL D NI IA + S G +EIG G G+L+ ML + + ++ Sbjct: 20 IFPNKNRGQNFLCDKNIAYNIANTIPSHLSRGEYALEIGGGLGSLSNMLHAVYKDNLTIV 79 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D + L + N ++I+ D L D N + + N+PYNI + ++ Sbjct: 80 EYDNALYNHL----IEKFNDIKIVHQDILTFDIS---NSENKYDVYGNIPYNIASPIM-E 131 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 W+ +++ W + Q + +R+ A++N+ +Y L++ + + + F++S VF+ Sbjct: 132 WLLHESYDK-WNYAVFMVQSDFAQRLIAKENTENYSSLTLFANFMSNIKLEFNVSKDVFY 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ--------SLKRLGGEN 248 P PKVTS+VI IP +E K +++ F RRKT+R ++ + + Sbjct: 191 PIPKVTSSVISIIPK-KVDTDIIEVFKSVSKTLFHNRRKTIRNNFIASPYLNIDKEYIDE 249 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L+++ I+ N+R E L I+ ++NI+ + Sbjct: 250 ILNKSNIDGNIRGETLHIDKVIELSNIVKE 279 >gi|257063482|ref|YP_003143154.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM 20476] gi|256791135|gb|ACV21805.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM 20476] Length = 296 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 22/288 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K +T+L + + KK +GQNFL+ I+ KI E S V+E+G G G LT L Sbjct: 9 KPSVTRTVLQRHGLATKKALGQNFLVSDAIIGKICELSEVCGQDDVLEVGPGIGTLTVAL 68 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRI 121 L A +V+ +E+D+ +L + N ++Q DAL + E F + +P + Sbjct: 69 LPR-ANRVLSVERDRDLPAVLAETCGAFDN-FTLLQKDALDLREEDFACVPGDPFAPNKF 126 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY + L+ ++ +S T++ Q EV +R++A+ + YG +V Sbjct: 127 VANLPYAVAATLVLDYFQKIES---IQSATVMVQSEVADRMSAKPATKEYGAYTVKLQLI 183 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 K T F +SP+ FFP P VTS+VI L P + + AF +RRKT+ Sbjct: 184 AKPTGRFQVSPNNFFPPPHVTSSVIRLDRRDDLGVTPDEAAAASMMADAAFTQRRKTVAN 243 Query: 240 SLKRLGGE-----------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 S+K+ ++ AGI+ R E L +E+F + L Sbjct: 244 SMKQYFSRPQSPIDATDVPKMMQSAGIDARRRGETLGLEEFIELGRCL 291 >gi|294674235|ref|YP_003574851.1| dimethyladenosine transferase [Prevotella ruminicola 23] gi|294473004|gb|ADE82393.1| dimethyladenosine transferase [Prevotella ruminicola 23] Length = 263 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 131/269 (48%), Gaps = 26/269 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ PKK +GQ+FL DLNI K+IA++ + I V+E+G G G +TQ L+ R V+E Sbjct: 3 QVRPKKNLGQHFLTDLNIAKRIADTVDACPNIPVLEVGPGMGVMTQYLVE-KPRPFKVVE 61 Query: 78 KD-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D Q+ FP L D II D L++D + F+ + N PY+I Sbjct: 62 IDRESVAYLQENFPRLND---------NIIGGDFLRMDLREVFD-GQQFVLTGNYPYDIS 111 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 +++ F + P T + Q EV R+ +Q + YG LSVL +F + Sbjct: 112 SQIFFKMLDNKDLIP---CCTGMIQHEVAVRMASQPGNKQYGILSVLIQAWYNVEYLFTV 168 Query: 191 SPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P VF P PKV S VI + + + C + +++ + F +RRK LR SL+++ N Sbjct: 169 EPGVFNPPPKVQSAVIRMTRNEVTDLGCDEQLFRRVVKATFNQRRKMLRVSLRQIFDANH 228 Query: 250 LHQAGIETN----LRAENLSIEDFCRITN 274 AG + R E LSI F +TN Sbjct: 229 PAPAGFFDDEIMTRRPEQLSIPQFIELTN 257 >gi|213693330|ref|YP_002323916.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|239622870|ref|ZP_04665901.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|317482342|ref|ZP_07941362.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA] gi|322690152|ref|YP_004209886.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis 157F] gi|254807861|sp|B7GPE3|RSMA_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|213524791|gb|ACJ53538.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|239514867|gb|EEQ54734.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|316916222|gb|EFV37624.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA] gi|320459512|dbj|BAJ70133.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461488|dbj|BAJ72108.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis 157F] Length = 307 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 248 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302 >gi|264680839|ref|YP_003280749.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2] gi|262211355|gb|ACY35453.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2] Length = 253 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 132/269 (49%), Gaps = 26/269 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQNFL D I+ I ++ G ++EIG G L+Q L+ LG VI + Sbjct: 2 KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLGKLTVIEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 ++D L+D L++++ D LKVDF + +R++ NLPYNI + +L Sbjct: 62 DRDLAARLRLRD-------DLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPIL 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV +R+ A + YGRLSV+ WR + + P Sbjct: 115 FHLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGS 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR------LGGEN 248 F P PKV S V+ IP P + L+++ Q AF +RRK LR +L + GE Sbjct: 172 FNPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEARGFAGEF 231 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L + RAE + + +F + L+ Sbjct: 232 DLQR-------RAEEVPVAEFEALAAQLS 253 >gi|269926972|ref|YP_003323595.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798] gi|269790632|gb|ACZ42773.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798] Length = 288 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 144/291 (49%), Gaps = 20/291 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN H + IL Y + PKK +GQNFL+ +L+ I ++S T++EIG G G LT Sbjct: 1 MNNNFHDPRLILKKYGLYPKKGLGQNFLISPKVLRTILQASEITPQDTILEIGPGTGVLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP 118 + L AR V+ IE D+ IL+ +Q+PN + I+Q + L+++ + I Sbjct: 61 RHL--AAARCVVAIELDETLVQILRQELAQYPN-IHIVQGNILEIEHPQLVAELCGIEKN 117 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +II NLPY I + + ++ P + ++ QKEV ERITA P L+V Sbjct: 118 YKIIGNLPYYITSHAIRRFLEIQPSPSL---VIIMVQKEVAERITA--TPPKMSLLAVSV 172 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + M+ + F P P+V S V+ +P+ + S +I F ++RK+ Sbjct: 173 QYYAIPEMVTLVRRTAFIPPPEVDSAVLRLRVREHPLFPDIPSDIYFRIVSAGFAQKRKS 232 Query: 237 LRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L SL LL +A I+ N+RAE L++ED+ RI L + + Sbjct: 233 LLNSLSSSLNLPKSRIATLLDKASIDHNVRAEQLTLEDWARICRQLMECES 283 >gi|300705123|ref|YP_003746726.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum CFBP2957] gi|299072787|emb|CBJ44142.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum CFBP2957] Length = 281 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 126/261 (48%), Gaps = 15/261 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL+D ++ I + ++EIG G G LT L+ + +V+ +++D Sbjct: 15 RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139 ++ + + ++L + DAL DF P+RI+ NLPYNI + LLF+ + Sbjct: 74 ----LVARLQRRFGDKLVVHAGDALAFDFGALHVPGRPLRIVGNLPYNISSPLLFHLSAF 129 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 AD + QKEV ER+ A S + RLSV+ R ++ D+ P F P P Sbjct: 130 ADRV----RDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPP 185 Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 KV S V+ IP +P P + +L + AF +RRK LR +L L G Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVALAFSQRRKVLRNTLGSLREAIDFDALGF 245 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + RAE + + DF + N L Sbjct: 246 DLGRRAEEVPVADFVAVANAL 266 >gi|23465240|ref|NP_695843.1| dimethyladenosine transferase [Bifidobacterium longum NCC2705] gi|33516942|sp|Q8G6I3|RSMA_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23325870|gb|AAN24479.1| dimethyladenosine transferase ribosomal RNA adenine dimethylase [Bifidobacterium longum NCC2705] Length = 308 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 25/295 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------------LESLKKIT 226 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGTQRELVFRLI 248 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 249 DAAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 303 >gi|189440314|ref|YP_001955395.1| dimethyladenosine transferase [Bifidobacterium longum DJO10A] gi|226729757|sp|B3DP38|RSMA_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189428749|gb|ACD98897.1| Dimethyladenosine transferase for rRNA methylation [Bifidobacterium longum DJO10A] Length = 307 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 248 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302 >gi|260427332|ref|ZP_05781311.1| dimethyladenosine transferase [Citreicella sp. SE45] gi|260421824|gb|EEX15075.1| dimethyladenosine transferase [Citreicella sp. SE45] Length = 257 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 57/118 (48%), Positives = 82/118 (69%), Gaps = 2/118 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ +++ + + KK +GQNFLLDLN+ KIA +G L G+ V+EIG GPG LT+ LL G Sbjct: 10 LREVIATHDLSAKKSLGQNFLLDLNLTAKIARQAGDLAGMDVLEIGPGPGGLTRGLLAEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 AR+V+ IEKD + L +I++ +P RLE+I+ DAL+VD +++ PI I ANLPY Sbjct: 70 ARRVLAIEKDARCLSALAEIAAAYPGRLEVIEGDALQVD--PLQHLTPPIAICANLPY 125 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 222 LKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L+++ AF +RRK LR +LK L E+ L + I RAE +S+E FC + L Sbjct: 200 LERVVAAAFNQRRKMLRAALKGLAPDIEDRLQASDIAPTDRAEQVSLEQFCALARTLA 257 >gi|257894901|ref|ZP_05674554.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408] gi|257831280|gb|EEV57887.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408] Length = 241 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 20/244 (8%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF- 109 +IE+G G G LT+ L A++V+ E D + P+L D + N + I+ D LK D Sbjct: 1 MIEVGPGIGALTEQLAK-HAKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLS 58 Query: 110 ---EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 + F+ P++++ANLPY I T ++ +++ +D + L ++ QKEV +RI+A+ Sbjct: 59 TAVRETFHEELPLKVVANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEP 115 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKK 224 + YG LS+ + +A++ F + VF P P V S ++ P + + + Sbjct: 116 GTKAYGSLSIAVQYYMEASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFR 175 Query: 225 ITQEAFGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNI 275 +T+ AF +RRKTL +L+ G++ L AGI+ R E LS+++F ++N Sbjct: 176 LTKAAFQQRRKTLWNNLQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNA 235 Query: 276 LTDN 279 +++N Sbjct: 236 MSEN 239 >gi|21673632|ref|NP_661697.1| dimethyladenosine transferase [Chlorobium tepidum TLS] gi|27151567|sp|Q8KE87|RSMA_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21646748|gb|AAM72039.1| dimethyladenosine transferase [Chlorobium tepidum TLS] Length = 275 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 13/257 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K H I KK +GQNFLLD NI +KI SG +G V+EIG G G LT +L + Sbjct: 3 KVEYKHTHIAAKKKLGQNFLLDRNIPRKIVRESGIKEGDRVVEIGPGFGALTTAILEVMP 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 IEKD++ + K +HP ++E+I+DD LKV E + ++ N+PY+I Sbjct: 63 -SFTAIEKDRE---LAKFNREEHP-QIELIEDDFLKVPLEP-LAAGGKLSVLGNIPYSIT 116 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +LF + S TL+ Q EV +RI A + YG L+V +F + Sbjct: 117 SPILFRLLDNRH---LIASATLMIQHEVAQRIAAVPGTKEYGILAVQMQAFCDVKYLFKV 173 Query: 191 SPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 VF P P V S VI +P ++P+ E + + F +RRKTL +LK + Sbjct: 174 GRAVFKPRPDVDSAVIKMVPKAVDPVKDS-EGFRTFVRRVFHQRRKTLLNNLKEYYDTSG 232 Query: 250 LHQAGIETNLRAENLSI 266 + + ++ LRAE+LS+ Sbjct: 233 VPEPTLK--LRAESLSV 247 >gi|296455131|ref|YP_003662275.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JDM301] gi|296184563|gb|ADH01445.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JDM301] Length = 322 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 25/295 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 28 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 88 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 202 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------------LESLKKIT 226 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 203 WYGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGAQRELVFRLI 262 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 263 DAAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 317 >gi|169351499|ref|ZP_02868437.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552] gi|169291721|gb|EDS73854.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552] Length = 268 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 143/279 (51%), Gaps = 34/279 (12%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y + K GQNFL+D+N++ KI + + + VIE+G G G LTQML G Sbjct: 11 KYILDKYNLNALKKYGQNFLIDINVVNKIIKETRIDKDVAVIEVGPGIGALTQMLSRYGG 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK-------VDFEKFFNISSPIRIIA 123 KVI E D++F P+ + + LEII D +K VD +K + S + ++A Sbjct: 71 -KVISFEIDERFRPVYDEFLI--ADNLEIIFGDFMKQEINKIVVDLKKTY---SKVYLVA 124 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I T ++ I +D + L ++ QKEV ++T+ +P L ++ K Sbjct: 125 NLPYYITTAIIEKVILSDCN---IDQLIVMVQKEVALKMTSDYKNP----LLLMIKDMGK 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFI----PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 +F ++ +VF P+P V S +I + P+L L I F +RRKT+ Sbjct: 178 VEYLFTVNKNVFLPAPHVDSAIIKIVLTKKPNL--------KLYDILNVCFKQRRKTIYN 229 Query: 240 SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNIL 276 +LK+ L L + I+T R+E LS+ DF IT+++ Sbjct: 230 NLKKEYSNALEILEKCKIDTKKRSEELSLNDFKNITDMI 268 >gi|46190717|ref|ZP_00206545.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Bifidobacterium longum DJO10A] Length = 321 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 28 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 87 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 88 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 202 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 203 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 262 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 263 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316 >gi|322692102|ref|YP_004221672.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456958|dbj|BAJ67580.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 307 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 24/289 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R+ A+ S YG SV Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227 W A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 248 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 AFG+RRKTL +LK + AGI+ R E L+I +F + + Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAI 297 >gi|302345754|ref|YP_003814107.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC 25845] gi|302150103|gb|ADK96365.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC 25845] Length = 267 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/268 (32%), Positives = 136/268 (50%), Gaps = 15/268 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DL+I ++IA++ + I V+EIG G G LTQ L+ R+V +E D Sbjct: 6 PKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEIDS 64 Query: 81 QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L + + P R I+ D L++D + F+ P + N PY+I +++ F + Sbjct: 65 ESVAFLYE---KFPKLRENILGQDFLRMDLNEVFD-GRPFVLTGNYPYDISSQIFFKMLE 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV +R+ A S YG LSVL +F + +VF P P Sbjct: 121 YKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPPP 177 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAG 254 KV S VI + + I C K++ + F +RRK LR SL+++ + ++ Sbjct: 178 KVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQD 237 Query: 255 IETNLRAENLSIEDFCRITNILTDNQDI 282 I T R E LSI F +TN++ + I Sbjct: 238 IMTK-RPEQLSIAQFVELTNMVDEQLKI 264 >gi|29830130|ref|NP_824764.1| dimethyladenosine transferase [Streptomyces avermitilis MA-4680] gi|33516923|sp|Q82HC3|RSMA_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29607240|dbj|BAC71299.1| putative dimethyladenosine transferase [Streptomyces avermitilis MA-4680] Length = 295 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++G V+E+G G G+LT LL Sbjct: 15 IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125 A +VI +E D L I+++ P R E ++ DA+ V + P ++ANL Sbjct: 74 ADRVIAVEIDDVLAGALPATIAARMPERAERFALVHSDAMHV---RELPGPPPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + DT+P +L ++ Q EV +R+ A S YG SV W + Sbjct: 131 PYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAADPGSRVYGVPSVKANWHAEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I +VF+P+P V S ++ + PI + + AF +RRKTLR Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVSLVRRTEPIKTTASKTEVFAVVDAAFAQRRKTLRAALAG 247 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILTDNQDIA 283 + E L AG+ R E+L++E+F RI N D+ D A Sbjct: 248 WAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAENRGADHADDA 293 >gi|124265397|ref|YP_001019401.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1] gi|166221677|sp|A2SC77|RSMA_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|124258172|gb|ABM93166.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1] Length = 256 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 121/254 (47%), Gaps = 13/254 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I +K GQ+FL D ++ I G ++EIG G G +T L+ + V+E Sbjct: 2 KHIARKRFGQHFLSDAAVVDAIVGLIDPRPGQALVEIGPGLGAMTDPLVAR-CEHLTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136 D+ + L++I+ D L+VDF S+ +RI+ NLPYNI T +LF+ Sbjct: 61 LDRD-----LAARLRRRAELQVIESDVLRVDFAALAMASAGRLRIVGNLPYNISTPILFH 115 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + A E + QKEV ER+ A S YGRLSV+ WR + D+ P F Sbjct: 116 LLPAAAQ---VEDQHFMLQKEVVERMAAAPCSKDYGRLSVMLQWRYDIESVLDVPPEAFE 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENLLHQAGI 255 P P+V S V+ +P P L ++ AF +RRK LR +L K L Sbjct: 173 PPPRVNSAVVRMLPFPAPPAVDAALLGELVATAFSQRRKLLRHTLGKWLDAREF--SGTF 230 Query: 256 ETNLRAENLSIEDF 269 +T RAE + + D+ Sbjct: 231 DTQRRAEEVPVADY 244 >gi|162446903|ref|YP_001620035.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A] gi|161985010|gb|ABX80659.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A] Length = 262 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 137/267 (51%), Gaps = 21/267 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D N+LKKI +S+ D V+EIG G G LTQ ++ A+K + E D Sbjct: 4 AKKRFGQNFLTDKNLLKKIVDSAQIHDK-NVLEIGPGLGALTQFIVK-DAKKYLAYEIDY 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFN 136 +L++ S+ N II D L+ D + +F PI +I NLPY I T ++F Sbjct: 62 SLKDVLENFLSEDSN---IIFQDFLESDVTNDLDTYFK-GEPIHLIGNLPYYITTPIIFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ D ++ T++ QKEVG+R+ ++KN Y S + + T ++ +++ +F Sbjct: 118 FLEIDQL----KTATIMVQKEVGDRMISKKNLKSYNAFSAILQYFTDVRLVVNVNRKMFN 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENL------ 249 P PKV S V+ + LE +I + +F +RKTL +L E+ Sbjct: 174 PVPKVDSMVVQLTKKETKLDKSLELKFIQIVKLSFMHKRKTLLNNLSTGLNEDKAKILES 233 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L ++ RAE+LS++DF +T L Sbjct: 234 LKSLNLDEKTRAESLSVDDFITLTEKL 260 >gi|20806642|ref|NP_621813.1| dimethyladenosine transferase (rRNA methylation) [Thermoanaerobacter tengcongensis MB4] gi|27151574|sp|Q8RDC8|RSMA_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|20515090|gb|AAM23417.1| Dimethyladenosine transferase (rRNA methylation) [Thermoanaerobacter tengcongensis MB4] Length = 268 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 145/267 (54%), Gaps = 18/267 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNF+ D N+L KI +SG + V+E+G G G LT+ L +KV+ E D+ Sbjct: 3 AKKKWGQNFIFDKNLLSKIVRASGVGEEDFVLEVGTGHGGLTEELAK-KVKKVVSFEIDK 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFN 136 + F + ++ + N + II +D L+VD ++ F+ +S +++ANLPY I + ++ Sbjct: 62 ELFEMSREKLKIYKNVV-IINEDILEVDLLEIAQEHFDGNS-FKVVANLPYYITSPIIMK 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + +T+L QKEV ERI A + YG L+V ++ K ++F++ P VF Sbjct: 120 MLDC----KLVKEMTVLVQKEVAERICALPGTKDYGMLTVFVNFKAKPEILFNLPPKVFV 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ- 252 P PKV S+++ + P+ + ++ + AFG+RRK L SLK LG + +LH+ Sbjct: 176 PPPKVESSLLKLKVYDKPLVEVKDEKLFSEVVRAAFGQRRKVLSNSLKVLGFSKEVLHET 235 Query: 253 ---AGIETNLRAENLSIEDFCRITNIL 276 GI R E LSI+ F + N L Sbjct: 236 LLKVGISPQARGETLSIDQFANLANAL 262 >gi|317120934|ref|YP_004100937.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM 12885] gi|315590914|gb|ADU50210.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM 12885] Length = 310 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 24/290 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L+ L Y + P + +GQNFL+D + ++I + V+E+G G G LT+ Sbjct: 13 TRRAELRRWLEQYGVRPSRRLGQNFLVDDHWAERIVGAVEPGPDDVVLEVGPGLGALTER 72 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NI 115 L+ R V+ +E D++ L+ + N +++ D L+VD + Sbjct: 73 LVRRAGR-VVAVEVDRRLAEALRQRLACVDN-FQLVVADVLQVDLADLVARHLAPVGGDD 130 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +++ +NLPY I + L W+ + WE L Q EV +R+ A + YG L+ Sbjct: 131 MPAVKLASNLPYAITSPFLVRWLGSSV---RWERAVLTLQAEVVDRLVAAPGTAAYGALT 187 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGK 232 V + + + + F+P P+V S V+ PH P P + ++L + + AF + Sbjct: 188 VFVAYHARVERLGIVPAGAFWPRPEVDSAVVRLWPHPQP-PVAVADPDALFALVRAAFSQ 246 Query: 233 RRKTLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RRK L +L R E AG++ R E + +E F R+ N L Sbjct: 247 RRKRLANALAAHPAVDRRQAEAACRAAGLDPGARPEEVDLEGFARLANQL 296 >gi|269123293|ref|YP_003305870.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM 12112] gi|268314619|gb|ACZ00993.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM 12112] Length = 273 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 126/263 (47%), Gaps = 13/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D +L+KI E + +IEIG G G LT M+L GA K+ E D Sbjct: 13 KKKFGQNFLDDKILLEKIKEVTNISVNDNIIEIGPGIGFLTSMILESGA-KLKSFEIDND 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+L + N E+I D L + E R+IAN+PY I ++ + Sbjct: 72 LIPVLNKKFGNYEN-FELIHVDFLLYNLENIMGKGKEYRVIANIPYYITAPIINKLLE-- 128 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + L+ QKEVGER+ +KN+ + G + + G+ +K +F + F P PKV Sbjct: 129 -FKDNIKDIYLMVQKEVGERLNFEKNTSNKGVFTHVVGFHSKVEYLFTVEKEFFDPIPKV 187 Query: 202 TSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQA 253 S I I E K + +F +RK++ +LK +G EN L Sbjct: 188 DSAFIRINIDKEEKYSKMISFEKYLKYVKASFASKRKSISNNLKTIGISKGITENALVFI 247 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 G N RAE LSIEDF + NI+ Sbjct: 248 GKNNNSRAEELSIEDFIALINII 270 >gi|297564142|ref|YP_003683115.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848591|gb|ADH70609.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 293 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 129/277 (46%), Gaps = 21/277 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++T+ + I P K +GQNF++D +++I +G + V+E+G G G+LT LL Sbjct: 21 VRTLAERFGIRPTKTLGQNFVIDHGTVRRIVRVAGVTEEDAVVEVGPGLGSLTLALLPH- 79 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 R V +E D L + H +RL ++ DA++V P ++ANL Sbjct: 80 VRHVTAVEIDPALAEALPGTVADHAPDLADRLTVVHGDAMRV---TGLPGPEPTALVANL 136 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + ++ Q EV +R+TA YG S W A Sbjct: 137 PYNVSVPVLLHLLELLP---SLRRVLVMVQAEVADRVTASPGGRVYGVPSAKVAWYAGAR 193 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ---EAFGKRRKTLRQSLK 242 + +VF+P+P V S ++ I P P S +++ Q AF +RRKTLR +L Sbjct: 194 RAGAVGRNVFWPAPNVDSGLVELI--RRPPPATTASREEVFQVIDAAFAQRRKTLRAALA 251 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AG++ + R E+L + F I Sbjct: 252 GWAGSPPAAETALRAAGVDPSARGESLDVTAFAAIAE 288 >gi|312797254|ref|YP_004030176.1| Dimethyladenosine transferase [Burkholderia rhizoxinica HKI 454] gi|312169029|emb|CBW76032.1| Dimethyladenosine transferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 286 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 18/267 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I E+ ++EIG G G LT LL + + Sbjct: 6 HQGHFARKRFGQNFLVDTGVIDAIVEAIRPQPADRLVEIGPGLGALTAPLLER-VQTLHA 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTR 132 +E D+ ++ + + +RL + DAL DF + I + +R++ NLPYNI + Sbjct: 65 VELDRD---LIARLQQRFGSRLVLHAGDALAFDFASLADPAHIGASLRVVGNLPYNISSP 121 Query: 133 LLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LLF+ S F + + + Q EV ER+ A+ S Y RL+V+ +R + + Sbjct: 122 LLFHLAS------FADEVIDQHFMLQDEVVERMVAEPGSKDYSRLTVMLQYRYAIDKLIE 175 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKVTS V+ IP + P + L ++ AF +RRK LR +L G Sbjct: 176 VPPESFEPAPKVTSAVVRMIPRAAGDVPPVDIVRLGEVVTAAFSQRRKMLRNTLAAYRGR 235 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274 G + RAE++ + ++ + Sbjct: 236 VDFDALGFDLARRAEDVPVLEYVALAQ 262 >gi|320103121|ref|YP_004178712.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644] gi|319750403|gb|ADV62163.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644] Length = 325 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 35/296 (11%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+T+ I P+K GQNFL+DLN+ I + V+E+G G G LT+ + LG Sbjct: 9 LRTLFEREGIAPRKRYGQNFLIDLNLHDVIVAAGEVGPNDVVLEVGPGAGALTRRMADLG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK---------VDFEKFFNISSPI- 119 A VI +E D + ++ PN + ++Q DAL +D + P+ Sbjct: 69 A-AVIAVEIDPAMARLTRNAVEGRPN-VRVLQRDALANKNRIAPEVLDAVRAGLAVDPVA 126 Query: 120 ---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ANLPYN+ T +L N + A+ P E + + Q EV ERI A + YG LSV Sbjct: 127 RRFKLVANLPYNVATPILTNLLVAEE--PRVELMAVTIQWEVAERIVATPGTSAYGALSV 184 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL------KKITQEAF 230 LT A ++ + P VF+P P V S ++ + P P L + + + F Sbjct: 185 LTNALASAEIVRKLPPSVFWPRPLVDSAIM----VIRPDPARRTRLGDVVWFQSVIRRVF 240 Query: 231 GKRRKTLRQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RRK +R+ L + E+LL QA + + RAE ++++ + + L + Sbjct: 241 NHRRKNIRRVLHGYYRDMLTKSDIEDLLSQAELAPDARAETMTVDQLVGLAHRLKE 296 >gi|34539998|ref|NP_904477.1| dimethyladenosine transferase [Porphyromonas gingivalis W83] gi|188994112|ref|YP_001928364.1| dimethyladenosine transferase [Porphyromonas gingivalis ATCC 33277] gi|62900561|sp|Q7MXN7|RSMA_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732608|sp|B2RHC2|RSMA_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|34396309|gb|AAQ65376.1| dimethyladenosine transferase [Porphyromonas gingivalis W83] gi|188593792|dbj|BAG32767.1| putative dimethyladenosine transferase [Porphyromonas gingivalis ATCC 33277] Length = 258 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 128/260 (49%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ KK +GQ+FL DL+I ++IA++ + V+EIG G G LTQ LL G V VIE Sbjct: 3 RVKAKKALGQHFLRDLSIAERIADTLSEHKALPVLEIGPGMGVLTQFLLRKG-HDVRVIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L++ + +R II+ D L + F +I N PYNI +++ F Sbjct: 62 IDGESVSYLREEFPELSDR--IIEGDFLHYPLSELFPGGRQYCLIGNYPYNISSQIFFRL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + Q+EV R+ + YG LSVL +F + VF P Sbjct: 120 LDVREQIPCCSG---MLQREVAMRLASPPGKKDYGILSVLLQLWYNIEYLFTVDASVFDP 176 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + +PC ++LK + + AFG+RRKTLR SL+ + Sbjct: 177 PPKVQSGVIRLTRNDRKELPCSEKALKTVVKTAFGQRRKTLRNSLRGILPAGFDRFDEPV 236 Query: 257 TNLRAENLSIEDFCRITNIL 276 + R E LS +DF +T +L Sbjct: 237 FSKRPEQLSPDDFIALTLLL 256 >gi|256830231|ref|YP_003158959.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028] gi|256579407|gb|ACU90543.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028] Length = 280 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 12/266 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PK+ +GQNFL D NI ++I S G V+EIG G G LT++L V+ +EKD Sbjct: 9 PKRSLGQNFLSDPNICRRIVASLELAPGDPVLEIGPGRGALTRILAGHDG-PVMALEKDS 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + ++ I ++ P + ++ D L +E + + +I NLPYN+ + +++ +S Sbjct: 68 E---LVSWIKAEFPA-VGVVHADGLDFCWEGTRRLPG-LSLIGNLPYNVASPMIWEMVSR 122 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S+ + QKEV R+TA++ S YG LS G + +F + PHVF P PK Sbjct: 123 CR---SFRSMLFMVQKEVALRLTAKEGSRTYGALSAWVGNFVRGEYVFTVPPHVFRPQPK 179 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGIET 257 V S ++ F+P +P +L + F +RRK L LK E + + G++ Sbjct: 180 VDSAIVRFLPRPDPAWEDAAALSWTVKILFQQRRKQLGTILKAHWSEAVETWCGELGVDR 239 Query: 258 NLRAENLSIEDFCRITNILTDNQDIA 283 +R E LS + + +L + A Sbjct: 240 RVRPEELSPDALRSLARVLDPKNEAA 265 >gi|221069848|ref|ZP_03545953.1| dimethyladenosine transferase [Comamonas testosteroni KF-1] gi|220714871|gb|EED70239.1| dimethyladenosine transferase [Comamonas testosteroni KF-1] Length = 253 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 16/264 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQNFL D I+ I ++ G ++EIG G L+Q L+ LG VI + Sbjct: 2 KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLGKLTVIEL 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 ++D L+D L++++ D LKVDF + +R++ NLPYNI + +L Sbjct: 62 DRDLAARLRLRD-------DLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPIL 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV +R+ A + YGRLSV+ WR + + P Sbjct: 115 FHLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGS 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENLLHQA 253 F P PKV S V+ IP P + L+++ Q AF +RRK LR +L K L + + Sbjct: 172 FNPPPKVDSAVVRMIPREQPADLDPKLLEEMVQVAFSQRRKILRNTLGKWLEAKGFTGEF 231 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 ++ RAE + + +F + L+ Sbjct: 232 DLQR--RAEEVPVGEFEALAAQLS 253 >gi|212715125|ref|ZP_03323253.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM 16992] gi|212661806|gb|EEB22381.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM 16992] Length = 309 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 22/287 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 22 AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + +R ++ DAL V E FN Sbjct: 82 ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFNNDDSFT 140 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R++ + S YG SV Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSEKPGSKIYGTPSVKLA 196 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVI--------HFIPHLNPIPCCL--ESLKKITQEA 229 W A + I +VF+P+P V S ++ H NP + E++ ++ A Sbjct: 197 WYGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTSSANNPDGSVVDRETVFRLIDAA 256 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 FG+RRKTL +LK++ +AGI+ R E L+I++F + + Sbjct: 257 FGQRRKTLHAALKKVVPSEAFERAGIDPTRRGETLTIDEFVALARAM 303 >gi|294495698|ref|YP_003542191.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219] gi|292666697|gb|ADE36546.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219] Length = 229 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 21/234 (8%) Query: 17 YKIIPKKY------MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 Y I+ KKY + Q+FL++ IL IAE++ V+EIG G GNLT+ L++ Sbjct: 3 YSIL-KKYGIRGGSLDQHFLVNEPILDSIAEAADLQIDDVVLEIGGGIGNLTERLVSRAG 61 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 R VIVIE+D + +L+D N ++II+ DA+KV+ F +++ANLPY+I Sbjct: 62 R-VIVIERDSRLVAVLQDRFHNVSN-IDIIEGDAMKVELPTFN------KVVANLPYSIS 113 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + + F ++ +E L++Q E R+ S +YGRLSV T + ++ I Sbjct: 114 SPITFRLLNHG-----FEKGILMYQYEFARRMVEAPGSKNYGRLSVDTQYFADVRLLRKI 168 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR 243 SP F P+PKV S V+ +P E L ++ + AFG+RRK ++ +L + Sbjct: 169 SPSAFTPAPKVWSAVVEVVPRPPAFEVKNEQLFFRVVEAAFGQRRKKMKNALTK 222 >gi|303232891|ref|ZP_07319575.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4] gi|302481081|gb|EFL44157.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4] Length = 351 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 122/274 (44%), Gaps = 19/274 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + + K +GQNFL+D ++ KI + +++E+G G G L+ LL Sbjct: 57 RRVLEQHGLYAKHRLGQNFLVDDAVIGKILALAQPRAHTSLLEVGPGIGTLSLALLQQHC 116 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD------FEKFFNISSPIRIIAN 124 ++I IEKD +L + + N + + DAL+VD F K NI P ++AN Sbjct: 117 -QLIAIEKDDDLLDVLASTCALYENAMHVYHSDALRVDAASLQAFCKARNIPQPAALVAN 175 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I L+ + D P E +T++ Q EV R+ A+ + YG S Sbjct: 176 LPYQIAATLVLQYFE-DM--PQLERMTVMVQSEVACRMAAKPHDKLYGAYSAKLALYAAP 232 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQS 240 F + P F P+P VTS VI H C L++ + AF +RRKTL Sbjct: 233 AGSFVVKPSSFMPAPHVTSQVIALQRHAQADLVCDGELRRRVCVLIDAAFAQRRKTLVNC 292 Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDF 269 L G L + + +RAE L F Sbjct: 293 LSAAGIAPDAARACLREMQLAPAIRAEVLCAAQF 326 >gi|55377170|ref|YP_135020.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049] gi|62900484|sp|Q5V588|RSMA_HALMA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|55229895|gb|AAV45314.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049] Length = 285 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 132/266 (49%), Gaps = 34/266 (12%) Query: 27 QNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 Q+FL+D +L +I E + +D V+EIGAGPG LT LL A +V +E+D F Sbjct: 28 QHFLVDDRVLDRIPEYATDADIDLSHVLEIGAGPGALTDRLLAT-AERVTAVERDPDFAA 86 Query: 85 ILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L++ ++ +RL I++ DAL+VD F I+NLPY + + F + Sbjct: 87 HLREEFTEEVAADRLTIVEGDALEVDLPDF------TASISNLPYGASSEIAFRLL---- 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L L+FQ+E ER+ A + YGRLSV G ++ + P F P P+VT Sbjct: 137 --PEQRPLLLMFQQEFAERMAADPATDDYGRLSVTAGHYADVEVVETVPPEAFDPQPRVT 194 Query: 203 STVIHFIPHLNP--IPC---CLESLKKITQEAFGKRRKTLRQSLKR------LGGENLLH 251 S ++ +P +P ++ LK + F +RRKT+R +++ LG + + Sbjct: 195 SALVRTMPRTPDYTVPSDDFFMDFLKAV----FTQRRKTMRNAVRNTAHISGLGDPDAVV 250 Query: 252 QAGIE--TNLRAENLSIEDFCRITNI 275 +A E + RA L+ DF + + Sbjct: 251 EAADEGLMSARAGKLTPADFATLATL 276 >gi|20090300|ref|NP_616375.1| dimethyladenosine transferase [Methanosarcina acetivorans C2A] gi|27151576|sp|Q8TQU8|RSMA_METAC RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|19915300|gb|AAM04855.1| dimethyladenosine rRNA methyltransferase [Methanosarcina acetivorans C2A] Length = 269 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 142/280 (50%), Gaps = 27/280 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +++IL+ Y I + Q+FL+D+ L +I ++ T++EIGAG GNLT+ L Sbjct: 2 VRSILNKYNIKGGTF-DQHFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERL-ARR 59 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E D +L D + N +E+I DALKVDF +F ++++NLPY+I Sbjct: 60 AKKVIAVELDPALVSVLHDRFDKVEN-IEVIAGDALKVDFPEF------DKVVSNLPYSI 112 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + ++ L++Q E R+ + Y RL+V T + A+++ Sbjct: 113 SSEITFKLLRYK-----FKLGILMYQYEFAARMVSPPGRKDYSRLTVDTYYFADASILMK 167 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F P+P+V S V+ +P +P E+ + F +RRK LR S+ L + Sbjct: 168 VPKGAFQPAPEVDSAVVKLVPRPSPFEVRDEAFFLEFVAAVFSQRRKKLRNSI--LNTNS 225 Query: 249 LLHQAGIE----------TNLRAENLSIEDFCRITNILTD 278 +L I+ N RAENL+ E+ + N+L D Sbjct: 226 MLKIPDIKEVVNQLPDDFVNKRAENLTPEELASVANMLFD 265 >gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus kandleri AV19] gi|27151577|sp|Q8TWU7|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus kandleri AV19] Length = 278 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 24/239 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L + S Y I P++ +GQ+F++D NIL+ + E++ + V+EIG GPG LT+ L+T Sbjct: 7 LAYLRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMT-R 65 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +VI +E D + ILK + PN LEI++ D L+ D N +++AN+PYNI Sbjct: 66 AGQVIAVELDGRMVEILKRELGEAPN-LEIVRADFLEYDVPDDVN-----KVVANIPYNI 119 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + D + L +Q+E ER+ A+ S Y RL+V+ ++ Sbjct: 120 SSPITFKLLELDI-----DVAVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRG 174 Query: 190 ISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + F P P+V S+V+ P ++P ++L+ + + F + KT+R +L Sbjct: 175 VPRRAFIPPPRVGSSVVRLTPKSEEERPDVDP-----DTLESVCRALFQHKNKTVRNAL 228 >gi|307728472|ref|YP_003905696.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003] gi|307583007|gb|ADN56405.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003] Length = 276 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 132/277 (47%), Gaps = 29/277 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ ++ Sbjct: 11 HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIE----RLAT 66 Query: 76 IEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 E + +D+ + NR LE+ DAL DF ++++P +RI+ NLP Sbjct: 67 PEAPLHAVELDRDLIGRLKNRFGALLELHAGDALAFDFG---SLAAPGDAPSLRIVGNLP 123 Query: 127 YNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 YNI + LLF+ S F + + Q EV ER+ A+ + + RLSV+ +R Sbjct: 124 YNISSPLLFHLTS------FAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYV 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRKTLRQS 240 D+ P F P PKV S ++ IP P P L ++ AF +RRK LR + Sbjct: 178 IDKQLDVPPEAFQPPPKVDSAIVRMIP-FAPHELAPVDERVLGEVVTAAFSQRRKMLRNT 236 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L L G G + RAE++ + ++ R+ ++ Sbjct: 237 LAGLRGTVDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273 >gi|289185434|gb|ADC91854.1| dimethyl adenosine transferase [Paenibacillus popilliae] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 106/191 (55%), Gaps = 9/191 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL+D+NI+++I +++ +EIG G G LT+ L+ +V +E DQ+ Sbjct: 26 KKSLGQNFLVDMNIMRRIVDAAEPDSVTGALEIGPGIGALTEQLVQQSG-QVAAVEIDQR 84 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNW 137 PIL ++ +PN + ++ D LKVD F F + ++ANLPY + T +L Sbjct: 85 LIPILGEVLEPYPN-VRVVHGDVLKVDLGELFRDQFQAMDKVSVVANLPYYVTTPILMRL 143 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + P +++ ++ QKEV ERI AQ S YG LSV + ++ ++ + P VF P Sbjct: 144 LE-ERLP--VKNIVVMIQKEVAERIAAQPGSKDYGSLSVAIQYFSEPQLVCIVPPSVFIP 200 Query: 198 SPKVTSTVIHF 208 P V S VI Sbjct: 201 QPNVESAVIKL 211 >gi|309812813|ref|ZP_07706551.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185] gi|308433230|gb|EFP57124.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185] Length = 297 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 18/273 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K GQNF++D N ++KI +G TV+E+G G G+LT LL Sbjct: 20 AADIRELAERHGVRPTKTWGQNFVIDPNTVRKIVRLAGVGADDTVVEVGPGLGSLTLALL 79 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A + V+E D Q ++ + QH ++L ++Q DA+ VD + +P ++ Sbjct: 80 PAVA-HLSVVEVDPNLAAQLPATVERFAPQHASKLNVVQADAMTVDSLE----PAPTALV 134 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ N++ P + + ++ Q EV +R+ A+ S YG SV W Sbjct: 135 ANLPYNVSVPVVLNFLEHF---PSLQRVLVMVQLEVAQRLAAEPGSKVYGVPSVKAAWYA 191 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 + + +VF+P+P V S ++ + P + + AF +RRKTLR +L Sbjct: 192 DVRLADRVGRNVFWPAPNVDSGLVSLVRRDPPTTEATRAQVFACIDAAFAQRRKTLRAAL 251 Query: 242 KRLG-----GENLLHQAGIETNLRAENLSIEDF 269 E L AGI+ R E L I++F Sbjct: 252 AGWAGGADRAEAALVAAGIDPRTRGERLGIDEF 284 >gi|313677281|ref|YP_004055277.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126] gi|312943979|gb|ADR23169.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126] Length = 260 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 12/263 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK++GQ+FL D NI +KI ES SG ++EIG G G L+ L+ +++ ++ D Sbjct: 6 AKKHLGQHFLKDQNIAQKIVESLSGHKKYQHLLEIGPGTGVLSNFLIDRAEYELLFMDVD 65 Query: 80 QQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 Q+ L++ Q+P+ E II++D L++D ++ II N PYNI +++ F + Sbjct: 66 QESVDYLQN---QYPDYKEKIIKEDFLRIDLGHYY--KEAFGIIGNFPYNISSQIFFKVL 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + QKEV ERI A++ S YG LSVL + +F + P+VF P Sbjct: 121 EYRNQIP---EVVGMIQKEVAERIAAKEGSKTYGILSVLLQAFYEVEYLFSVPPNVFNPP 177 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS V+ + C E L ++ ++ F RRKTLR +LK + + + Sbjct: 178 PKVTSAVLRLKRNETQTLDCDEKLFFRVVKQGFNNRRKTLRNALKTFNLSDEIKSLDL-L 236 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 + RAE L++ DF +TN + + + Sbjct: 237 DKRAEQLTVNDFVELTNHIANGE 259 >gi|255016922|ref|ZP_05289048.1| dimethyladenosine transferase [Listeria monocytogenes FSL F2-515] Length = 255 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 133/263 (50%), Gaps = 29/263 (11%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + +I +++ VIEIG G G LT+ L +V+ E DQ+ PIL D S + N Sbjct: 1 MTRITDTAEITKETNVIEIGPGIGALTEQLAK-TTNEVVAFEIDQRLLPILDDTLSAY-N 58 Query: 96 RLEIIQDDALKVDFE-----KFFNISSPIRIIANLPYNIGT----RLLFNWISADTWPPF 146 ++++ D LK D E +F P++I+ANLPY + T +LL + I AD Sbjct: 59 NVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPYYVTTPIILKLLHDNIPAD----- 113 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 S+T + QKEV +RI+A ++ YG L++ + +A + F + VF P P V S VI Sbjct: 114 --SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVI 171 Query: 207 HFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-------SLKRLGGENL--LHQAGI 255 H P+ E ++T+ +F +RRKTL +LK E + L+ GI Sbjct: 172 HLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGI 231 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + R E L I +F +++N L D Sbjct: 232 DLIRRGETLDIPEFAKLSNFLGD 254 >gi|46399670|emb|CAF23119.1| putative dimethyladenosine transferase [Candidatus Protochlamydia amoebophila UWE25] Length = 256 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 21/263 (7%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 ++D NI++KI +S G V+EIG GPG+LTQ +L + A V+ +EKD F + +++ Sbjct: 1 MIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAH-VVAVEKD---FVLAREL 56 Query: 90 SS-QHPNR-LEIIQDDALKVDFEKFFNISSPIR------IIANLPYNIGTRLLFNWISAD 141 Q P++ LEI +D L E+ + S +R +IANLPY++ T +L + Sbjct: 57 KRFQTPSKQLEIFCEDILMFSVEE--ELQSRLRDDQKAKVIANLPYHLTTPILAEMVVRR 114 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + SLT++ Q+EV R+TA Y ++ + +K F +S + F+P+PKV Sbjct: 115 K---LFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKV 171 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIET 257 S ++ P + KIT+ AF +RRK LR SLK L N L G Sbjct: 172 DSAIVVLELKEPPPNIDAQVFFKITRTAFEQRRKMLRASLKSLFDPSKISNALEIIGQNP 231 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 R E LS+EDF ++ + L ++ Sbjct: 232 QARPEVLSLEDFIKLYHELYSSE 254 >gi|282163396|ref|YP_003355781.1| probable dimethyladenosine transferase [Methanocella paludicola SANAE] gi|282155710|dbj|BAI60798.1| probable dimethyladenosine transferase [Methanocella paludicola SANAE] Length = 276 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 27/271 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P K Q+FL+DLNILKKI + V+EIG GPGNLT+ LL AR V IE Sbjct: 11 IAPDKRKDQHFLIDLNILKKIVAIADIHKDEDVLEIGTGPGNLTE-LLAQKARHVYTIEM 69 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D +L++ + + II+ +ALKV+F +F +++ANLPY+I + + F + Sbjct: 70 DPALVALLEE--KFKGSNVTIIKGNALKVEFPRF------DKVVANLPYSISSDVTFKLL 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + ++ L++Q+E +R+ A+ P Y RLSV ++ + P F P Sbjct: 122 KNN-----FKLGILMYQREFAQRMIARVGEPDYSRLSVDVQHFADVEILMKVPPQAFSPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 P+V S V+ P +L + AF +RRK LR +L + G +++ G++ Sbjct: 177 PEVESAVVRVTPRPAAYSVKDRALFMALVTAAFTQRRKRLRNAL--VNGAHIMGIHGMKA 234 Query: 258 ----------NLRAENLSIEDFCRITNILTD 278 + RAE +S E++ + + L + Sbjct: 235 LVSRLPPDLMDKRAEEVSPEEYAALADRLYE 265 >gi|149927947|ref|ZP_01916197.1| dimethyladenosine transferase [Limnobacter sp. MED105] gi|149823386|gb|EDM82619.1| dimethyladenosine transferase [Limnobacter sp. MED105] Length = 256 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 126/259 (48%), Gaps = 13/259 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+FL D ++L + T++EIG G G LT LL + VIE D+ Sbjct: 6 KKRFGQHFLTDQSVLSNLIGEMRPRADDTLVEIGPGLGALTFWLLK-AVNHLQVIEIDRD 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 L+ + ++L + + D LK DF + + +P R++ NLPYNI + +LF + A Sbjct: 65 LAEKLR--TGNWKDKLTVHEVDVLKFDFRQ---LPAPFRVVGNLPYNISSPILFALLEVA 119 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + QKEV +R+ A + YGRLSV+ +FD+ P F P P+ Sbjct: 120 DQV----IDQHFMLQKEVIDRMVAAPKTSDYGRLSVMLQAYYDMDHLFDVPPECFDPPPR 175 Query: 201 VTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S ++ +P + E ++ AF +RRK LR + + E++ AGI Sbjct: 176 VMSAIVRMVPKQAQERAAIPGEIFSRVVSTAFSQRRKMLRNTWANVVPEHIASAAGIALT 235 Query: 259 LRAENLSIEDFCRITNILT 277 RAE ++ E F ++ +L Sbjct: 236 ARAEEIAPEQFVQVAQMLA 254 >gi|227327730|ref|ZP_03831754.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 164 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 5/159 (3%) Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ T+ + + QKEV R+ A NS +GRLSV+ + Sbjct: 4 GNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYYC 60 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKTLR S Sbjct: 61 QIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFNQRRKTLRNS 120 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L L ++L + GI+ + RAEN+++E +CR+ N L+++ Sbjct: 121 LGNLFTPDVLTELGIDVSSRAENVTVEQYCRLANWLSEH 159 >gi|320536299|ref|ZP_08036342.1| dimethyladenosine transferase [Treponema phagedenis F0421] gi|320146859|gb|EFW38432.1| dimethyladenosine transferase [Treponema phagedenis F0421] Length = 287 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 132/284 (46%), Gaps = 17/284 (5%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N +L + L + +K GQNFL+D N+ K + +S G + EIG G G +T + Sbjct: 7 NSPSALASFLKERDLGMRKKFGQNFLIDENMRKFLIDSLELQGGERIWEIGPGLGAMTFL 66 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL E D F L+ ++P +I+ DALK ++ F P N Sbjct: 67 LLEKNVH-TTAFEIDSGFSDFLRKAYGENP-LFTLIEGDALKT-WKAAFEKEKPDCFFGN 123 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI +L+ + I A+ ++ L + QKEVG+R+ AQ NSP Y SVL Sbjct: 124 LPYNIAAKLIADTIEAEA---IFDKLLVTVQKEVGDRMRAQPNSPDYSSFSVLCNRYYDV 180 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL-- 241 T + I F+P P V S + + I C L ++ + F RRKTL+ + Sbjct: 181 TALRTIPSACFWPRPNVVSQALLLTKKTDLIDCKDNKLFFQLLRAFFSSRRKTLKNNFLA 240 Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + + +A I+++ RAE L + DF ++ +ILT Sbjct: 241 WQKSNPLYAAVDADTFFKKAEIDSSARAETLQVYDFLKLCDILT 284 >gi|197124132|ref|YP_002136083.1| dimethyladenosine transferase [Anaeromyxobacter sp. K] gi|220918912|ref|YP_002494216.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1] gi|226729750|sp|B4UDZ6|RSMA_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807855|sp|B8J7H0|RSMA_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|196173981|gb|ACG74954.1| dimethyladenosine transferase [Anaeromyxobacter sp. K] gi|219956766|gb|ACL67150.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 284 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 29/293 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + S + +L Y + KK GQNFL D +L IA + G V+E+GAG G+LT Sbjct: 1 MTDHYPSPRALLDRYDLRAKKSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---- 118 LL GAR V +E+D+ +L+ + +R+ +++ DA ++D+ Sbjct: 61 ARLLARGAR-VAAVERDRDMVRVLR---GELGDRITLLEADAARLDYADLAARFGAAAAA 116 Query: 119 -----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + ++ NLPY++ + +LF+ + L Q+EV ER+ A S +G Sbjct: 117 GEGPRLAVVGNLPYHLTSPILFSILDQVA---HVSRAVFLLQREVAERLAAPPASRDWGV 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFG 231 LSVL ++ + P F+P PKV S V+ F P + + +++ + FG Sbjct: 174 LSVLLQREADVSVERIVPPGAFWPPPKVASAVLCALFRPPADAV-ADPARFRRLVKAGFG 232 Query: 232 KRRKTLRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +RRKTLR +L RL E AG++ R E L++ ++ + L Sbjct: 233 QRRKTLRNALGSAKLADPARL--EAAFAAAGVDPGRRGETLTLAEWAALERTL 283 >gi|281420569|ref|ZP_06251568.1| dimethyladenosine transferase [Prevotella copri DSM 18205] gi|281405342|gb|EFB36022.1| dimethyladenosine transferase [Prevotella copri DSM 18205] Length = 270 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 25/265 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DLNI K+IA++ + I V+EIG G G LTQ L+ R V +E D Sbjct: 6 PKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPRVVKAVEIDS 64 Query: 81 QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + FP LKD II +D L++D + F+ + N PY+I +++ Sbjct: 65 ESVAYLHENFPTLKD---------NIIGEDFLRMDLNQIFD-GKQFVLTGNYPYDISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + Q+EV R+ ++ + YG LSVL +F + + Sbjct: 115 FFKMLDYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLIQAWYDVEYLFTVDEN 171 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S VI + + + C + K++ + F +RRK LR SLK++ + Sbjct: 172 VFNPPPKVKSAVIRMTRNKVTDLGCDEKLFKRLVKTVFNQRRKMLRVSLKQMFPGVTPRE 231 Query: 253 AGIETNL---RAENLSIEDFCRITN 274 T++ R E L+I+ F +TN Sbjct: 232 EFFTTDIMTKRPEQLTIQQFVELTN 256 >gi|254251454|ref|ZP_04944772.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158] gi|124894063|gb|EAY67943.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158] Length = 275 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 133/279 (47%), Gaps = 21/279 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + G ++EIG G G LT+ L+ +V Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLI----ERVAT 62 Query: 76 IEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 E + +D+ + R LE+ DAL DF ++++P +R++ NLP Sbjct: 63 PESPLHAVELDRDLIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDQPSLRVVGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 120 YNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 M D+ P F P PKV S ++ IP+ + +P + L ++ AF +RRK LR +L Sbjct: 177 MLDVPPESFQPPPKVDSAIVRMIPYERHELPDVDPALLGEVVTAAFSQRRKMLRNTLGDY 236 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G G + RAE++S+ ++ I L + + Sbjct: 237 RGTIDFDALGFDLARRAEDVSVAEYVGIAQALAATRSVG 275 >gi|282853600|ref|ZP_06262937.1| dimethyladenosine transferase [Propionibacterium acnes J139] gi|282583053|gb|EFB88433.1| dimethyladenosine transferase [Propionibacterium acnes J139] gi|314922156|gb|EFS85987.1| dimethyladenosine transferase [Propionibacterium acnes HL001PA1] gi|314965239|gb|EFT09338.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA2] gi|314982376|gb|EFT26469.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA3] gi|315092583|gb|EFT64559.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA4] gi|315093999|gb|EFT65975.1| dimethyladenosine transferase [Propionibacterium acnes HL060PA1] gi|315104569|gb|EFT76545.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA2] gi|327329529|gb|EGE71289.1| dimethyladenosine transferase [Propionibacterium acnes HL103PA1] Length = 298 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 24/285 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S++ I + P K GQNF+ D N +++I + VIE+G G G+LT LL Sbjct: 11 SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGLLET 70 Query: 69 GARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIAN 124 GA +V+ IE D+ L D ++ + P RLE++ DAL V K + P ++AN Sbjct: 71 GA-EVVAIEIDEVLANQLPDTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTALVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W +A Sbjct: 127 LPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWYAEA 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFI----PHL---NPIPCCLESLKKITQEAFGKRRKTL 237 T + ++ P VF+P P V S ++ PH+ NP + ++ AF RRK L Sbjct: 184 TRVGNVPPTVFWPVPNVDSGLVRITRRRSPHVDGRNP-RVTRSQVFRVVDAAFASRRKML 242 Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R +L L G L+ AGI+ R E L I D R+ L Sbjct: 243 RSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287 >gi|119026633|ref|YP_910478.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC 15703] gi|166221647|sp|A1A3W3|RSMA_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118766217|dbj|BAF40396.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC 15703] Length = 303 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 31/304 (10%) Query: 1 MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51 MT N H+ ++ I + I P K GQNF++D +++I +G V Sbjct: 1 MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 60 Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKV 107 +E+G G G+LT +L GA + +E D L K I+ P+ R ++ DAL V Sbjct: 61 LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 119 Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITA 164 + E F ++ANLPYN+ T +L + D F ++ QKEV +R++ Sbjct: 120 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSE 175 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPIPC 217 + S YG SV W A + I +VF+P+P V S ++ F P + Sbjct: 176 KPGSKIYGTPSVKLAWYGTAERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADG 235 Query: 218 CL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E++ ++ AFG+RRKTL +LK++ +AGI+ R E L+I++F + Sbjct: 236 SVVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALAR 295 Query: 275 ILTD 278 L + Sbjct: 296 ALDE 299 >gi|320527164|ref|ZP_08028351.1| dimethyladenosine transferase [Solobacterium moorei F0204] gi|320132492|gb|EFW25035.1| dimethyladenosine transferase [Solobacterium moorei F0204] Length = 280 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/276 (31%), Positives = 137/276 (49%), Gaps = 18/276 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL + + KK GQNFL+D I+++ AE S +G VIEIG G G+LT+ L + A Sbjct: 12 KEILDQFGLRAKKGFGQNFLVDPIIVERCAEMS-HCEG-AVIEIGPGIGSLTEQL-AMHA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLP 126 + V+ E D+ P+L+ + N +EII D L D ++ + + + ANLP Sbjct: 69 QHVLAFEIDEGLIPVLQHTLEGYSN-VEIILQDFLMCDLDEVVHALKEKYGTVSVCANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T +LF P +T++ QKEVG+R A+ P Y LSV + Sbjct: 128 YYITTPVLFKIFEN----PDISYITVMVQKEVGDRFVAKPKDPEYNALSVEGQYLFDIKR 183 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR-- 243 +F + F PSP V S +I F N + ++ + F +RRKT+ +LK Sbjct: 184 LFTVPGRSFNPSPAVDSVIIQFARKDNDASNEEIRDFFELVRACFKQRRKTIYNNLKEYV 243 Query: 244 ---LGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L +A I N RA+ L+I++ +I ++ Sbjct: 244 DDGVKATEILEKANIPVNKRAQELTIDELKQIHEVM 279 >gi|296271121|ref|YP_003653753.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833] gi|296093908|gb|ADG89860.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833] Length = 288 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 130/264 (49%), Gaps = 16/264 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 P K +GQNF++D L++I + V+E+G G G+LT LL A +V+ +E D Sbjct: 26 PTKRLGQNFVIDGGTLRRIVRLAQVTPEDVVLEVGPGLGSLTLALLPEAA-QVVAVEVDP 84 Query: 80 --QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + P+ + + + + RL +++ DAL++ E +P ++ANLPYN+ +L + Sbjct: 85 VLAERLPVTVAEYAPEVAGRLRVVRADALRIGPEDLG--VAPDALVANLPYNVAVPILLH 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ Q EV +R+TAQ S YG SV W + + VF+ Sbjct: 143 LFA--VLPSLRRGLVMV-QAEVADRLTAQPGSKLYGVPSVKIAWFAEVRRAGSVGRSVFW 199 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR-----QSLKRLGGENLL 250 P P V S ++ + P E + + AF +RRKTLR + G E L Sbjct: 200 PVPNVDSGLVALVRRDPPKTTASREEVFAVVDAAFAQRRKTLRAALAPWAGGAAGAERAL 259 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 AGI+ + R E L+IEDF RI Sbjct: 260 RDAGIDPSARGERLTIEDFARIAE 283 >gi|159036383|ref|YP_001535636.1| dimethyladenosine transferase [Salinispora arenicola CNS-205] gi|157915218|gb|ABV96645.1| dimethyladenosine transferase [Salinispora arenicola CNS-205] Length = 289 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 15/270 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G V+E+G G G+LT LL + Sbjct: 10 IRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLASNDVVLEVGPGLGSLTLALLPVA 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L + + +H RL + + DAL+V + + +P ++ANL Sbjct: 70 A-HVHAVEIDPVLAAALPETAVRHAGPAAARLSVHRADALRVTAGQLAD-PAPTALVANL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P L ++ QKEV +R+ A S YG SV W + Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSRVYGVPSVKLAWYARVR 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + P+VF+P P V S ++ F P S + + AF +RRKTLR +L Sbjct: 185 AAGRVPPNVFWPVPNVDSGLVAFTRREPPGAGGSRSRVFAVVDAAFAQRRKTLRAALAGW 244 Query: 245 G-----GENLLHQAGIETNLRAENLSIEDF 269 +L AG++ R E+L++E F Sbjct: 245 AGGGDRAAAVLTAAGVDPGARGESLTVEQF 274 >gi|332705358|ref|ZP_08425436.1| dimethyladenosine transferase [Lyngbya majuscula 3L] gi|332355718|gb|EGJ35180.1| dimethyladenosine transferase [Lyngbya majuscula 3L] Length = 282 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 19/270 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K Q++L L +I ++ ++EIG G G LTQ LL + V+ +E D+ Sbjct: 6 RKKFAQHWLRSEEALNQIVTAANLQKSDRILEIGPGTGILTQRLLPF-VQSVVAVEIDRD 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLLFNW 137 +L + N L ++Q D L +D + F N P +++AN+PYNI +L Sbjct: 65 LCRLLVKKLGKIDNFL-LLQGDFLSLDLDTLLANFSNFQKPNKVVANIPYNITGPILEKL 123 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + T P P ++ + LL QKEV +R+ A+ +S +G LSV + + ++ D+ F Sbjct: 124 LGTITQPAVPGFDLIVLLVQKEVAQRLYAKPSSRQFGALSVRVQYLAECELICDVPGSAF 183 Query: 196 FPSPKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 P PKV S V+ P L P CLE+L K+ FG +RK LR +LK + + Sbjct: 184 SPPPKVDSAVVRLHPSLAEPPASDPRCLETLLKL---GFGSKRKMLRNNLKSVIERDRIT 240 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL Q I RAE+LS+ + + N +T Sbjct: 241 QLLEQLEISPQARAEDLSVAQWIALANQIT 270 >gi|313205524|ref|YP_004044701.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868] gi|312444840|gb|ADQ81195.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868] gi|315023396|gb|EFT36406.1| Dimethyladenosine transferase [Riemerella anatipestifer RA-YM] gi|325335044|gb|ADZ11318.1| Dimethyladenosine transferase (rRNA methylation) [Riemerella anatipestifer RA-GD] Length = 262 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 129/258 (50%), Gaps = 19/258 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D NI KI E+ V+E+G G G LT+ LL + ++ V E D + Sbjct: 6 KKHLGQHFLNDENIASKIVEALEVDVQDFVLEVGPGMGVLTKYLLNKNS-EIFVAEIDVE 64 Query: 82 FFPILKDISSQHPNRLEI--IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 LK+ H +LE D LK + + FN S + +I N PYNI +++LF I Sbjct: 65 SIAYLKE----HYPKLEEKHFVGDFLKANLTEIFN-SEQVSVIGNFPYNISSQILFKIID 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + +FQKEV ER +A+ + YG LSV+ +F +S +VF P P Sbjct: 120 NYAQIP---EMVGMFQKEVAERTSAEPRTKSYGILSVMVQAYYDVKYLFTVSENVFTPPP 176 Query: 200 KVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 KV S VI NP LE K+I + F +RRK L +LK L L Sbjct: 177 KVKSGVIRLTR--NP-KKGLEGNEVLFKQIVKAGFNQRRKKLSNALKGLNIPEALLTHNF 233 Query: 256 ETNLRAENLSIEDFCRIT 273 T LRAE LS+EDF T Sbjct: 234 LT-LRAEELSVEDFIIFT 250 >gi|256374794|ref|YP_003098454.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827] gi|255919097|gb|ACU34608.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827] Length = 298 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 16/276 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N ++KI ++ V+E+G G G+LT LL Sbjct: 25 VRRLAAELDVRPTKKLGQNFVHDPNTVRKIVAAANLRPDDVVLEVGPGLGSLTLALLPAC 84 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A ++ +E D L +++ L ++ DA++V + + +P ++ANL Sbjct: 85 A-DLVAVEIDPVLAARLPTTAAERAPSLAANLSVVTADAMRVTAAQLPH--APTALVANL 141 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P + ++ Q EV +R+ A S YG SV W A Sbjct: 142 PYNVAVPVVLHLLAEL---PSLRTGLVMVQSEVADRMAAGPGSKVYGVPSVKLAWYADAR 198 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244 + VF+P P V S ++ F P+ E L + AF +RRKTLR +L Sbjct: 199 RAGPVGRSVFWPVPNVDSALVGFTRRDAPLSDVPREVLFPLVDAAFAQRRKTLRAALSGW 258 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E L AG++ + R E LS+ DF RI + Sbjct: 259 AGSAAEAERRLVAAGVDPSARGEQLSVADFVRIAEV 294 >gi|227548244|ref|ZP_03978293.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079667|gb|EEI17630.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM 44291] Length = 284 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 17/271 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 + S + P K +GQNF+ D N +++I ++ V+E+G G G+LT L+ Sbjct: 15 LASELGVTPTKKLGQNFVHDPNTVRRIVAAAKLNADDVVVEVGPGLGSLTLGLVD-SVSH 73 Query: 73 VIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS-SPIRIIANLPY 127 V+ +E D + L + + RLE++ DAL+V + ++S +P ++ANLPY Sbjct: 74 VVALEIDPRLAGRLARTVEERADAFATRLEVVCADALRV---RRSDVSHAPTALVANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ +L + + + +P L ++ QKEV +R+ A+ S YG SV + + T Sbjct: 131 NVSVPVLLHLL--EEFPTIRRVLVMV-QKEVADRLAAEPGSKIYGVPSVKAAFYGRVTRA 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 I +VF+P+P + S ++ S+ + AF +RRKTLR +L + G Sbjct: 188 GTIGKNVFWPAPNIESGLVRIDVDPKVDRTLRASVFPLVDAAFAQRRKTLRSTLAGVYGS 247 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273 E L AGI+ LR E LS++DF R+ Sbjct: 248 PVAAEQALVAAGIDPGLRGEKLSVDDFVRLA 278 >gi|323524760|ref|YP_004226913.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001] gi|323381762|gb|ADX53853.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001] Length = 276 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 19/272 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H I +K GQNFL+DL ++ I + G ++EIG G G LT+ L L Sbjct: 11 HQGHIARKRFGQNFLVDLGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK+ + + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 71 LHAVELDRDLIGRLKN---KFGDLLELHAGDALAFDFG---SLAAPGDAPSLRIVGNLPY 124 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ T+ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 125 NISSPLLFHLA---TFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 181 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P PKV S ++ IP+ P L ++ AF +RRK LR +L L Sbjct: 182 LDVPPEAFQPPPKVDSAIVRMIPYAPHELAPVDERVLGEVVTAAFSQRRKMLRNTLAALR 241 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ + ++ R+ ++ Sbjct: 242 DTVDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273 >gi|225352355|ref|ZP_03743378.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156862|gb|EEG70231.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 309 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 22/284 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 22 AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D ++ + + +R ++ DAL V E F Sbjct: 82 ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFQNDDSFT 140 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D F ++ QKEV +R++ + S YG SV Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSEKPGSKIYGTPSVKLA 196 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLN-PIPCCL--ESLKKITQEA 229 W A + I +VF+P+P V S ++ F P N P + E++ ++ A Sbjct: 197 WYGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTPSANNPDGSVVDRENVFRLIDAA 256 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 FG+RRKTL +LK++ QAGI+ R E L+I++F + Sbjct: 257 FGQRRKTLHAALKKIVPSEAFEQAGIDPTRRGETLAIDEFVALA 300 >gi|171920785|ref|ZP_02931975.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178813|ref|ZP_02964605.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024415|ref|ZP_02997074.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518431|ref|ZP_03003922.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524212|ref|ZP_03004272.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867442|ref|ZP_03079446.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273367|ref|ZP_03205903.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554601|ref|YP_002285056.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550876|ref|ZP_03771825.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551296|ref|ZP_03772242.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226732636|sp|B5ZCB6|RSMA_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171903544|gb|EDT49833.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209443|gb|EDU06486.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018700|gb|EDU56740.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998093|gb|EDU67190.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660052|gb|EDX53432.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660918|gb|EDX54171.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249887|gb|EDY74667.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542102|gb|ACI60331.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379111|gb|EEH01476.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380030|gb|EEH02392.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 281 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 17/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K L +P K MGQNFLL I KI + ++EIG G G +T++L+ Sbjct: 6 IKNKLKQESFVPSKKMGQNFLLSNEIKNKIVNVANISKDDLILEIGPGWGAITELLVQ-K 64 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIA 123 ++ IE D++ + LK + PN II +D L VD +K + I+++A Sbjct: 65 TDTLVAIELDKRLYAHLK-TYIKAPN-FHIINNDVLCVDLDKLILDYTNTKKNQKIKVVA 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I ++++ I + + ++ QKE+ ERI A+ N+ Y +VL K Sbjct: 123 NLPYAISSKIVLKIIQSKLINDAY----IMVQKEMAERIGAKVNTRGYNAFTVLVQLFCK 178 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++F ++ F P PKV S VIH N + +E + K + F +RK L+ +L Sbjct: 179 TKILFQVNAKEFHPQPKVQSAVIHLENLHNKVDFDIEQVSKFLRICFLNKRKKLKNNLSN 238 Query: 244 LGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277 + L+++ ++ NLRAEN+ + F + N L Sbjct: 239 IYDIKLVNEMFIDYNLDMNLRAENIEPKMFLELFNYLN 276 >gi|91781824|ref|YP_557030.1| dimethyladenosine transferase [Burkholderia xenovorans LB400] gi|118600850|sp|Q145L1|RSMA_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91685778|gb|ABE28978.1| dimethyladenosine transferase [Burkholderia xenovorans LB400] Length = 277 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 25/278 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L L Sbjct: 11 HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK ++ + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 71 LHAVELDRDLIGRLK---TKFGDLLELHAGDALAFDFG---SLAAPGDKASLRIVGNLPY 124 Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 NI + LLF+ + F + + Q EV ER+ A+ + + RLSV+ +R Sbjct: 125 NISSPLLFHLTA------FAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVI 178 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242 D+ P F P PKV S ++ IP+ L+ +P E L ++ AF +RRK LR +L Sbjct: 179 DKQLDVPPEAFNPPPKVDSAIVRMIPYELHELPPVDERVLGELVTAAFSQRRKMLRNTLA 238 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ + ++ R+ I+ ++ Sbjct: 239 AYRDSVDFEGLGFDLQRRAEDVPVAEYVRVAQIVAASK 276 >gi|260591378|ref|ZP_05856836.1| dimethyladenosine transferase [Prevotella veroralis F0319] gi|260536744|gb|EEX19361.1| dimethyladenosine transferase [Prevotella veroralis F0319] Length = 278 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 13/264 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DL+I K+IA++ + I V+EIG G G LTQ L+ R V +E D Sbjct: 17 PKKNLGQHFLTDLSIAKRIADTVDACPEIPVLEIGPGMGVLTQYLVE-KPRVVKAVEIDA 75 Query: 81 QFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L + H N I+ +D L++D + F+ + N PY+I +++ F + Sbjct: 76 ESVAYLYERFPKLHEN---ILGEDFLQMDLTQIFD-GKQFVLTGNYPYDISSQIFFKMLD 131 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV R+ A S YG LSVL +F + +VF P P Sbjct: 132 YKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLIQAWYDVEYLFTVDENVFNPPP 188 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S VI + + I C + K++ + F +RRK LR SL+++ E + Sbjct: 189 KVKSAVIRMTRNDVTDIGCNEQLFKRVVKTVFNQRRKMLRVSLRQIFNNGKPTDGFYEQD 248 Query: 259 L---RAENLSIEDFCRITNILTDN 279 + R E LSI F ++TN++ + Sbjct: 249 IMTKRPEQLSIPQFVKLTNMVEEQ 272 >gi|284038180|ref|YP_003388110.1| dimethyladenosine transferase [Spirosoma linguale DSM 74] gi|283817473|gb|ADB39311.1| dimethyladenosine transferase [Spirosoma linguale DSM 74] Length = 271 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 136/275 (49%), Gaps = 19/275 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAE---SSGSLDGI---TVIEIGAGPGNLTQMLLTLGARK 72 + PKK +GQ+FL DL+I ++IAE DG+ V+EIG G G LTQ LL Sbjct: 3 VKPKKELGQHFLKDLSIAQRIAELLTGHAGADGVPYTKVLEIGPGTGVLTQFLLQNSQFD 62 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYN 128 VIE D++ LK R I+ D L + + K + + P +I N PYN Sbjct: 63 TYVIEIDRESVEYLKQYVPALEGR--ILASDFLNIRPDLLPTKQPDNTEPFAVIGNFPYN 120 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T++LF + P + +FQ+EV +R+ + + YG LSVL F Sbjct: 121 ISTQILFKVLDMRDRVP---EVVGMFQREVAQRVASGPGNKDYGILSVLLQAWYDIKYEF 177 Query: 189 DISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-G 246 + P VF P PKV S VI + + + C ++ ++ + F +RRKTLR +LK L Sbjct: 178 TVDPSVFNPPPKVFSGVISLKRNAVTDLGCDVKKFTQVVKHGFSQRRKTLRNALKPLSPS 237 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 E L ++ RAE L + +F +T ++++ + Sbjct: 238 EAALASPFMDK--RAEQLGVAEFVALTILMSERAE 270 >gi|300864419|ref|ZP_07109290.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506] gi|300337563|emb|CBN54438.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506] Length = 281 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 30/273 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L +I +++ L V+EIG G G LT+ LL A+ V+ +E D+ Sbjct: 6 PRKRFAQHWLKSEKALNQIVKAA-DLSQDRVLEIGPGTGILTRSLLP-AAQSVVAVEIDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRL--- 133 L + N L ++Q D L +D E+ F +P +++AN+PYNI + Sbjct: 64 DLCEKLAKQLGKVDNFL-LVQGDILAMDLEEQLAAFPKFQNPNKVVANIPYNITGPIIEK 122 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L ISA PF + + LL QKEV ER+ A+ S +G LSV + + ++ D+ Sbjct: 123 LLGKISAPAAKPF-DLIVLLVQKEVAERLYAKPGSRAFGALSVRVQYLAECELICDVPAK 181 Query: 194 VFFPSPKVTSTVIHFIPHL------NPIPCCLESLKKITQEAFGKRRKTLRQSLK----- 242 F+P PKV S V+ P + NP+ LESL K+ FG +RK LR +LK Sbjct: 182 AFYPPPKVDSAVVRLRPRMVEPQAINPV--HLESLIKL---GFGSKRKMLRNNLKGTIEL 236 Query: 243 -RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 RL LL + I RAE+LS+ ++ + N Sbjct: 237 ERLA--QLLEKLQINPQCRAEDLSVAEWVALAN 267 >gi|261367577|ref|ZP_05980460.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176] gi|282570364|gb|EFB75899.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176] Length = 287 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 143/285 (50%), Gaps = 20/285 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ + + Y K GQNF+++ I +IAE++G G V+EIG G G LT+ L Sbjct: 9 TIRDLCARYDFALSKGFGQNFIINPGICPRIAEAAGIGPGWGVLEIGPGIGVLTEQLCKR 68 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANL 125 A KV+ +E D++ P+L + + + N +++ D LKVD + + P+ + ANL Sbjct: 69 -ADKVVSVEVDKRLPPLLAETMAGYDN-FKLVLQDVLKVDLKALLEEEFGTKPVAVCANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + +L + + P +++T++ Q+E +R+ A + G +S + + Sbjct: 127 PYYITSPILMRLLE-EKLP--IQNITVMVQREAAQRLCAAPGTREAGAISYAVAYYAQPK 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKT---- 236 ++F + P F+P+P VTS VI P P L ++ + + AF +RRKT Sbjct: 184 LLFTVQPGSFYPAPSVTSAVIRLDVRQQP-PVDLPDGREKAYFALIRAAFSQRRKTAANA 242 Query: 237 LRQSLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTDN 279 + LK + L L AG+E R E L++ + + L ++ Sbjct: 243 IANGLKLPKAQVLEALRTAGLEERARPEQLTLRAYAALLTALHED 287 >gi|302338023|ref|YP_003803229.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293] gi|301635208|gb|ADK80635.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293] Length = 293 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 128/281 (45%), Gaps = 18/281 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SL L + +K GQNFL+ + KI + V EIG G G +T M+L L Sbjct: 13 SLAAFLEARGLSMQKRFGQNFLVSPGVRSKIVKLLELSKDDHVWEIGPGLGAMTHMVLGL 72 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 R + V E D+ F L++ S E+++ D +K + + P I NLPYN Sbjct: 73 -CRNITVFEIDRGFISFLREHFSMVEG-FELVEGDVMKNWQPAYTRFAPPSLIFGNLPYN 130 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + + I A P + QKEV ER++A + YG S++ + + Sbjct: 131 CAASFIGDLIEAGANP---RKMVFTIQKEVAERMSASPGTKRYGAFSMICAFSWDVRIAG 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242 I P FFP P+VTS +I +PH + + L S ++ F RRKT+R SL Sbjct: 188 IIKPGSFFPVPEVTSAIIEMVPHHRFSGLSAGLAS--TFAKDLFANRRKTVRNSLSGGIL 245 Query: 243 --RLGGENLLH---QAGIETNLRAENLSIEDFCRITNILTD 278 RLG +L+ +AGI R E +S+E + LTD Sbjct: 246 AARLGKNAILNAAEEAGIGLGQRGEEVSVEMVAKACGHLTD 286 >gi|311747369|ref|ZP_07721154.1| dimethyladenosine transferase [Algoriphagus sp. PR1] gi|126579087|gb|EAZ83251.1| dimethyladenosine transferase [Algoriphagus sp. PR1] Length = 261 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 13/259 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVI 76 K+ KK++GQ+FL DL+I ++IA + G+ V+EIG G G LT LL ++ +I Sbjct: 3 KVRAKKHLGQHFLTDLSIAERIALAVKGHGGVKKVLEIGPGMGVLTDYLLK-NPLELYLI 61 Query: 77 EKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + D++ L + ++P+ + II+ D LK + +IS P I N PYNI +++ F Sbjct: 62 DIDKESIAYL---NKKYPSLKDRIIEGDYLKYNLSN--DISEPYAIAGNFPYNISSQIFF 116 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + QKEV +RI + K + YG LSVL +F + P VF Sbjct: 117 KVLEERDK---VTEVVCMLQKEVAKRIASPKGNKDYGILSVLLQAFYDIEYLFSVPPEVF 173 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S VI + + + + C + ++ + FG RRKTLR SLK L + Sbjct: 174 DPPPKVNSGVIRLVRNEVKSLDCNEKLFFQVVKGGFGNRRKTLRNSLKSFQLPEQLKEHP 233 Query: 255 IETNLRAENLSIEDFCRIT 273 + + RAE L + DF I Sbjct: 234 L-MDKRAEQLDVADFVFIA 251 >gi|303236809|ref|ZP_07323388.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN] gi|302482977|gb|EFL45993.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN] Length = 266 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 132/261 (50%), Gaps = 14/261 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DLNI K+IA++ I V+EIG G G LTQ L+ R+V +E D Sbjct: 6 PKKNLGQHFLTDLNIAKRIADTVDECPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEIDA 64 Query: 81 QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L + + P R I+ +D L++ E F + N PY+I +++ F + Sbjct: 65 ESVAYLNE---KFPTLRENILGEDFLRMQLENVFE-GRKFVLTGNYPYDISSQIFFKMLD 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV R+ AQ + YG LSVL +F + +VF P P Sbjct: 121 YKDLIP---CCTGMIQREVALRMAAQPGNKTYGILSVLMQAWYNVEYLFTVDENVFNPPP 177 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGI 255 KV S VI + + + C + K++ + F +RRK LR SL+++ ++ I Sbjct: 178 KVKSAVISLTRNDVTELGCDEKLFKRVVKTVFNQRRKMLRVSLRQIFTTKPREGFYEQDI 237 Query: 256 ETNLRAENLSIEDFCRITNIL 276 T R E L+I F ++TN++ Sbjct: 238 MTK-RPEQLTIAQFVKLTNMV 257 >gi|291455675|ref|ZP_06595065.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213] gi|291382603|gb|EFE90121.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213] Length = 309 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 21/282 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 14 AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREADVTTNDHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV--DFEKFFNISSPIR 120 GA + +E D ++ + + + +RL ++ DAL V D FN + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPRTVAEFMPEAADRLTVVNRDALTVTPDNVPDFNGDTSFT 132 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D+ F ++ QKEV +R+ A+ S YG SV Sbjct: 133 LVANLPYNVATPILLTLLERFDSLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFI---------PHLNPIPCCLESLKKITQEAF 230 W A + I +VF+P+P V S ++ F P E + ++ AF Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYAADDTQAPSHGKSSADRELVFRLIDAAF 248 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 G+RRKTL +LK + AGI+ R E L++ +F + Sbjct: 249 GQRRKTLHAALKTIVPAEAFAAAGIDPTRRGETLTVTEFAAL 290 >gi|317052466|ref|YP_004113582.1| dimethyladenosine transferase [Desulfurispirillum indicum S5] gi|316947550|gb|ADU67026.1| dimethyladenosine transferase [Desulfurispirillum indicum S5] Length = 270 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 145/276 (52%), Gaps = 15/276 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ IL+ + ++ KK +GQNF+ D + +++I + SG TV+EIG G G +T++L Sbjct: 3 VRQILNTHGLMAKKSLGQNFICDESFVQRIVKQSGVGPDDTVLEIGPGLGVMTRVLGERS 62 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI +E D Q L+ S+ P + ++ DAL+ D+ + + R+IANLPYNI Sbjct: 63 AR-VIALEIDGQLLDYLRS-SAHLPENVTLVHTDALRYDWG---TLPAECRVIANLPYNI 117 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV-LTGWRTKATMMF 188 +++L + +S +++ Q+E+ R + + +G L++ L + + Sbjct: 118 SSQILMAIVEHHQ---LVQSFSVMLQREMALRAMGESGTKDFGPLAIYLRLYYDLELSIS 174 Query: 189 DISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 I P VF+P+P V S+V+ +P +K+ + +F RRKTL+ + + Sbjct: 175 RIPPSVFYPAPGVESSVLQGRRLPQPRFPVGDFVRFQKLVRLSFSHRRKTLKNNYRGTTW 234 Query: 247 -ENLLHQA---GIETNLRAENLSIEDFCRITNILTD 278 E + QA GI LRAE LS+E F + +L D Sbjct: 235 FETFMDQAPALGISPELRAEALSLEQFYLLYRLLED 270 >gi|288559416|ref|YP_003422902.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium M1] gi|288542126|gb|ADC46010.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium M1] Length = 298 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 109/201 (54%), Gaps = 13/201 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL I K +GQN+L+D KKI + TV+EIG G G LT + L A Sbjct: 12 KRILQENDIKLNKNLGQNYLIDDFKRKKIINYANLTKEDTVLEIGPGIGTLT-IELAKRA 70 Query: 71 RKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +KVI IE+D+ F ILK + + N +E+I DA+KVDF +F +I++NLPY I Sbjct: 71 KKVIAIEQDETIFNILKKRLEKEKINNVELINGDAVKVDFPEFN------KIVSNLPYQI 124 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F +++ D ++ L++QKE +R+ + + Y RLS + ++ + Sbjct: 125 SSPISFKFLNHD-----FDLAILMYQKEFADRMNGKVGTKQYSRLSAMLYFKADVKFLTK 179 Query: 190 ISPHVFFPSPKVTSTVIHFIP 210 +SP F PSPKV S VI P Sbjct: 180 VSPESFIPSPKVDSAVIQLKP 200 >gi|325518852|gb|EGC98422.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Burkholderia sp. TJI49] Length = 275 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 29/277 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L L Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPESP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ ++ ++ + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 67 LHAVELDRD---LIARLTQRFGALLELHAGDALAFDFR---SLAAPGDAPSLRIVGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M Sbjct: 121 NISSPLLFHLM---TFADVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKM 177 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 D+ P F P PKV S ++ IP+ ++P+ L ++ AF +RRK LR + Sbjct: 178 LDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGELVTAAFSQRRKMLRNT 232 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L G + RAE++S+ ++ +T L Sbjct: 233 LGDYRDAIDFDALGFDLARRAEDVSVAEYVGVTQALA 269 >gi|260060929|ref|YP_003194009.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501] gi|88785061|gb|EAR16230.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501] Length = 321 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 128/266 (48%), Gaps = 14/266 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-- 79 KK++GQ+FL D ++ +IA + ++EIG G G LT LL ++ +E D Sbjct: 60 KKHLGQHFLTDASVAMRIAGTLSPDGPPRILEIGPGTGVLTAFLLRRPV-DLLAVELDGE 118 Query: 80 -----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 ++ FP+ + E++ D LK+D F P + N PYNI T+++ Sbjct: 119 SVKYLREVFPLELASETTSYKSFEVLHGDFLKLDLPGLFG-GKPFAVTGNFPYNISTQIV 177 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + P + +FQ+EV ERI A S YG LSVL A F + P V Sbjct: 178 FRVLENRERIP---EFSGMFQREVAERICAGPGSKTYGILSVLVQAYYLAEYRFTVPPEV 234 Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S V+H + + L ++ + AF +RRKTLR SLK L + L + Sbjct: 235 FDPPPKVESGVLHLRYRTDTRADWDYQHLTRLVKTAFNQRRKTLRNSLKSLPVPDYLKED 294 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I + R E L + +F ++ + D+ Sbjct: 295 AI-FDRRPEQLEVREFIALSKRIWDD 319 >gi|113474554|ref|YP_720615.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101] gi|110165602|gb|ABG50142.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101] Length = 281 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P+K Q++LL L KI +++ + ++EIG G G LT LL L A V+ +E Sbjct: 3 IQPRKRFAQHWLLSDKALNKIIQAAELSESDRILEIGPGTGVLTHRLLPLAA-SVVAVEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLL 134 D+ L + N L ++Q D L +D E +F +P +++AN+PYNI +L Sbjct: 62 DRDLCQKLVKKFGRVKNFL-LLQGDILSLDLETNLAQFIGFQNPHKVVANIPYNITGLIL 120 Query: 135 FNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + + P ++ + LL QKEV +RI A+ +S Y LSV + K + D+ Sbjct: 121 EKLLGTISQPLTNTYDLIVLLLQKEVADRICAKPDSKAYSSLSVKIQYLAKCEFICDVPA 180 Query: 193 HVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F+P PKV S VI P L P + ++ + + F +RK LR +LK + + Sbjct: 181 KAFYPPPKVDSAVIRLRPQLIEPQANNPKQMEMLVKLGFASKRKMLRNNLKAVVERDRLF 240 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL + RAE+L+++++ + N L Sbjct: 241 ELLENLKVNPQSRAEDLTVQEWVTLANSL 269 >gi|288800845|ref|ZP_06406302.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str. F0039] gi|288332306|gb|EFC70787.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str. F0039] Length = 279 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 138/275 (50%), Gaps = 19/275 (6%) Query: 13 ILSHYK------IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + HYK + PKK +GQ+FL+D +I ++IA++ + I V+EIG G G LTQ ++ Sbjct: 3 LCKHYKYGMIKQVKPKKNLGQHFLIDQSIARRIADTVDACPDIPVLEIGPGMGVLTQYIV 62 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 R +E D++ L + P R II +D L++D F+ S + + N Sbjct: 63 Q-KQRPFKAVEIDRESVTYLNE---AFPTLRENIIGNDFLQMDLNDVFDGKSFV-LTGNY 117 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+I +++ F + P T + Q+EV RI ++ + YG LSVL Sbjct: 118 PYDISSQIFFKMLDYKELIP---CCTGMIQREVALRIASEPGNKSYGILSVLIQAWYDVE 174 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 +F + +VF P PKV S VI + + + C + K++ + F +RRK LR SLK++ Sbjct: 175 YLFTVDENVFNPPPKVKSAVIRMTRNKVEKLDCDEQLFKRVVKTVFNQRRKMLRVSLKQI 234 Query: 245 GGENLLHQAGIETNL---RAENLSIEDFCRITNIL 276 + A E + R E LS+ F +TN++ Sbjct: 235 FNVSAARPAFYEQEIMTKRPEQLSVAQFVELTNLV 269 >gi|187922684|ref|YP_001894326.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN] gi|226729766|sp|B2SX63|RSMA_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|187713878|gb|ACD15102.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN] Length = 276 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 25/275 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L L Sbjct: 11 HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK ++ LE+ DAL DF ++++P +RI+ NLPY Sbjct: 71 LHAVELDRDLIGRLK---TKFGGLLELHAGDALAFDFG---SLAAPGEKASLRIVGNLPY 124 Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 NI + LLF+ S F + + Q EV ER+ A+ + + RLSV+ +R Sbjct: 125 NISSPLLFHLTS------FAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVI 178 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPI-PCCLESLKKITQEAFGKRRKTLRQSLK 242 D+ P F P PKV S ++ IP+ L+ + P L ++ AF +RRK LR +L Sbjct: 179 DKQLDVPPEAFNPPPKVDSAIVRMIPYELHELAPVDERVLGEVVTAAFSQRRKMLRNTLA 238 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ ++++ R+ I+ Sbjct: 239 AYRDSVDFEALGFDLQRRAEDVPVDEYVRVAQIVA 273 >gi|328954956|ref|YP_004372289.1| dimethyladenosine transferase [Coriobacterium glomerans PW2] gi|328455280|gb|AEB06474.1| dimethyladenosine transferase [Coriobacterium glomerans PW2] Length = 313 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 35/291 (12%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + + +L + + K +GQ+FL+D +++++I + V+E+G G G LT LL Sbjct: 11 ATRELLDEFGLTTKHRLGQHFLIDDHVVERIVRLAELDANARVVEVGPGIGTLTLALLPR 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLP 126 AR V+ IE D P+L + HP+ L I DAL+V F + +P ++ANLP Sbjct: 71 VAR-VVAIEMDPALEPVLAMHVADHPD-LSYIIGDALRVGFRAIAAEAGGAPTMLVANLP 128 Query: 127 YNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 YN ++ +++ D+ ES ++ QKEV +RI AQ + YG + + T Sbjct: 129 YNAAATIILDYLEHMDSL----ESAVVMVQKEVADRIAAQPGTKSYGAYTAKLRLIGELT 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFI------PHLNPIPCCLES------------LKKITQ 227 F++S F P P+V S+V+ L P CL + + Sbjct: 185 DRFEVSRLSFMPPPRVESSVVRIERAHRAGERLGP---CLAGASAGTGAVAPAQVASVID 241 Query: 228 EAFGKRRKTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDFCRIT 273 AF +RRKT+R S+ G +L +A I ++RAE L +DF R+T Sbjct: 242 AAFAQRRKTIRNSMTARGFDREMLDEALGASRIAPSIRAEALDTDDFIRLT 292 >gi|116004017|ref|NP_001070364.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos taurus] gi|83638584|gb|AAI09842.1| Transcription factor B1, mitochondrial [Bos taurus] gi|296483883|gb|DAA25998.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos taurus] Length = 226 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 14/206 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ +L Sbjct: 17 TIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPI 119 G +++V+EKD +F P L+ +S P +L I+ D L E+ F S + Sbjct: 77 GVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136 Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRL 174 II NLP+++ T L+ W+ + PF T L FQKEV ER+TA S RL Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQRSRL 196 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPK 200 S++ + + I F P P+ Sbjct: 197 SIMAQYLCDVQHILTIPGQAFVPKPE 222 >gi|300870168|ref|YP_003785039.1| putative dimethyladenosine transferase [Brachyspira pilosicoli 95/1000] gi|300687867|gb|ADK30538.1| putative dimethyladenosine transferase [Brachyspira pilosicoli 95/1000] Length = 283 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 18/270 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 I P K GQNFL D NI IA + L G IEIG G G+L+ +L+ + + ++ Sbjct: 20 IFPNKNRGQNFLCDRNIAYNIANTVPKDILRGDYAIEIGGGLGSLSNVLVDIYKNNLTIV 79 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D + LK+ + II +D LKV+ + + + N+PYNI + ++ Sbjct: 80 EYDNALYNHLKETYKD----INIIHNDILKVNINDI-DKNKNFDVYGNIPYNIASPII-E 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 W+ D + W + Q + R+ A++ S Y L++ + + + +++S VF+ Sbjct: 134 WLFCDCYNR-WNYAVFMVQSDFANRLIAKEGSEDYSALTLFASFMSDIKLEYNVSKEVFY 192 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS--------LKRLGGEN 248 P PKVTS++I P + L K +++ F RRKT++ + + + + Sbjct: 193 PIPKVTSSIISIKPKEVDLS-MLNIFKSVSKTLFHNRRKTIKNNFLKSPYIDIDKDKIDE 251 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L +A I+ +R E+LSIE ++ I+ D Sbjct: 252 ILEKANIDKEIRGESLSIEKVKELSLIIKD 281 >gi|305681981|ref|ZP_07404785.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC 14266] gi|305658454|gb|EFM47957.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC 14266] Length = 289 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 138/277 (49%), Gaps = 17/277 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLT 67 ++T+ S I P K +GQNFL D N ++ I ++ D V+E+G G G+LT L+T Sbjct: 12 IRTLASELDITPTKKLGQNFLHDPNTVRMIVTTAQFTDVTNRHVLEVGPGLGSLTLGLVT 71 Query: 68 LGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 KV IE D + L + + + +RL + DAL V + + P ++A Sbjct: 72 -ACEKVTAIEIDPRLAARLPRTIAEFAPDYADRLTVSNRDALTVSPQDIDMSTPPTALVA 130 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + ++ P + ++ Q EV +R+ A+ + YG SV + + Sbjct: 131 NLPYNVSVPILLHLLAEF---PSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAFYGQ 187 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLK 242 I +VF+P+PK+ S ++ I +P L +++ + AF +RRKTLR +L Sbjct: 188 VRRAGTIGKNVFWPAPKIDSGLVS-IDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAALS 246 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 + G E L +A I+ LR E L I DF R+ Sbjct: 247 GVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLAT 283 >gi|94986964|ref|YP_594897.1| dimethyladenosine transferase [Lawsonia intracellularis PHE/MN1-00] gi|118600874|sp|Q1MR01|RSMA_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94731213|emb|CAJ54575.1| rRNA (adenine-N6,N6)-dimethyltransferase [Lawsonia intracellularis PHE/MN1-00] Length = 271 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 134/261 (51%), Gaps = 16/261 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL D I +I + +G + EIG G G LT+ + +++++EKD Sbjct: 7 PKKSLGQHFLKDTAIAYRIVKLLDIHEGENIFEIGPGQGALTRHIYGYNPGQLLLVEKDS 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + Q+ +++ I DALK +E + ++I+NLPYN+G+ L+++ +S Sbjct: 67 CWVDYHSSVKQQNVSKVTIHHLDALKFSWE---TLCGSWKVISNLPYNVGSALIWDIVSR 123 Query: 141 DTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 +S++ + QKEV +R+ A + YG LSV K F + PH F+P Sbjct: 124 V------QSMSRAVFMVQKEVADRLCACPGTKSYGVLSVWVQSFAKVEWGFIVKPHSFYP 177 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQA 253 PKV S ++ P P ++ I ++ F RRK ++ L+++G N L + Sbjct: 178 QPKVDSAIVTLYPKPREEQPKNSKTFAWIIKQCFQHRRKQMQSILRKIGFLNYYESLERI 237 Query: 254 GIETNLRAENLSIEDFCRITN 274 GI + R E+LS + F +++ Sbjct: 238 GISPSARPESLSNQLFQQLSQ 258 >gi|306824012|ref|ZP_07457386.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679] gi|309801986|ref|ZP_07696100.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022] gi|304553010|gb|EFM40923.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679] gi|308221434|gb|EFO77732.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022] Length = 316 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 133/287 (46%), Gaps = 22/287 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 25 AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + I+ P+ R +I DAL V E F+ Sbjct: 85 ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D S ++ QKEV +R+ A+ S YG SV Sbjct: 144 LVANLPYNVATPILLTLLERFDNL----HSFLVMVQKEVADRLAAKPGSKIYGTPSVKLA 199 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF----------IPHLNPIPCCLESLKKITQEA 229 W A I +VF+P+P V S ++ F N E++ ++ A Sbjct: 200 WYGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSANGPAAKRETVFRLIDAA 259 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 FG+RRKTL +L+R + AGI+ R E L+I++F + L Sbjct: 260 FGQRRKTLHAALRRFVPDETFDMAGIDPTRRGETLTIDEFVALARAL 306 >gi|50364820|ref|YP_053245.1| dimethyladenosine transferase [Mesoplasma florum L1] gi|62900520|sp|Q6F2B4|RSMA_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50363376|gb|AAT75361.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Mesoplasma florum L1] Length = 267 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 131/274 (47%), Gaps = 28/274 (10%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQNF+ D N++ KI G+ +IEIG G G LT+ LL KV+ IE Sbjct: 2 KVEAKKKFGQNFISDQNLINKIVSILGNDKDQLIIEIGPGTGALTK-LLAQKYNKVVAIE 60 Query: 78 KDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGT 131 D PIL K+I++ + E+ D L VDFEK + + + II+N+PY I + Sbjct: 61 IDTDMEPILKKEITNDN---FELFLSDVLLVDFEKLIKEKRQHENQKVSIISNMPYYITS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +LF ++ + QKEV R+ + K +Y LSV + F + Sbjct: 118 EILFRTLNVSDK---LTKAVFMMQKEVAIRVCSYKGENNYNNLSVACEFYADKKYEFTVP 174 Query: 192 PHVFFPSPKVTSTVI------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 H+F+P PKV S +I + + L L+KI F RRKT+ +L + Sbjct: 175 KHMFYPVPKVDSAIISLTFNNKYTEQIKDKDKFLTFLRKI----FNNRRKTILNNLSNVT 230 Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 + +L I+ +LR E + +EDF RI N Sbjct: 231 NDKTKANEILDNLNIDKSLRPEVVGLEDFIRIYN 264 >gi|167957599|ref|ZP_02544673.1| dimethyladenosine transferase [candidate division TM7 single-cell isolate TM7c] Length = 260 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 138/263 (52%), Gaps = 33/263 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ++L D IL IA+ + T++EIG G G LT +LL+ A++VI IE D Sbjct: 5 KKHLGQHWLRDRFILNHIADCADINKNDTIVEIGPGLGTLTSILLS-RAKEVISIEFDAD 63 Query: 82 FFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + + Q P + L +I D L+ D + N+ +++ANLPY I +++ + ++ Sbjct: 64 ---LARKLPGQFPGKDLTVINQDILEFDTD---NLPKKYKLVANLPYYITAKVIHKFTTS 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL--TGWRTKATMMFDISPHVFF-P 197 P + LL QKEV ER+ AQ GR+S+L + + D+ P +F P Sbjct: 118 KNRP---SKMVLLVQKEVAERVVAQP-----GRMSLLSVSSQLYANVSLGDVVPACYFTP 169 Query: 198 SPKVTSTVIHF---IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-------- 246 PKV S V+ F P L P + L +I + F RRK LR SL GG Sbjct: 170 PPKVDSQVLIFDMIDPKL-PSDISEKELFRIVKAGFSSRRKKLRSSLS--GGLNINKNSV 226 Query: 247 ENLLHQAGIETNLRAENLSIEDF 269 E LL Q GI + RAE+LS+ED+ Sbjct: 227 ETLLMQTGISPDHRAEDLSVEDW 249 >gi|317484454|ref|ZP_07943366.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6] gi|316924278|gb|EFV45452.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6] Length = 268 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 130/261 (49%), Gaps = 15/261 (5%) Query: 22 KKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQ+FL D +I + G D V+EIG GPG +T ++ G + +IEKD Sbjct: 12 KKSLGQHFLKDAKTSARIVDLLRIGPED--RVLEIGPGPGAITGIIHERGPAEFRLIEKD 69 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + ++ P ++++ DAL +E ++ P +II+NLPYN+G+ L+++ +S Sbjct: 70 SYWAAHHAELERPAPA-VQVLNADALAFPWE---SLEGPWKIISNLPYNVGSPLMWDIVS 125 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + QKEV ER+ A+ + YG LSV + F + P F P P Sbjct: 126 RT---PDLTRAVFMVQKEVAERLYAKPGTKDYGALSVWIQSYVRVEWGFVVGPGAFNPPP 182 Query: 200 KVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255 KV S V+ FIP P ++L I + F RRK L+ L+R G ++ L + GI Sbjct: 183 KVDSAVVTFIPLPRERHPADPKALSSILKLCFQLRRKQLQSILRRAGRDDTAAALERLGI 242 Query: 256 ETNLRAENLSIEDFCRITNIL 276 R E L+ E F ++ I Sbjct: 243 APEARPETLTPEQFQQLAGIF 263 >gi|288803714|ref|ZP_06409143.1| dimethyladenosine transferase [Prevotella melaninogenica D18] gi|288333803|gb|EFC72249.1| dimethyladenosine transferase [Prevotella melaninogenica D18] Length = 267 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 135/268 (50%), Gaps = 15/268 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DL+I ++IA++ + I V+EIG G G LTQ L+ R+V +E D Sbjct: 6 PKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEIDS 64 Query: 81 QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L + + P R I+ D L++D + F+ + N PY+I +++ F + Sbjct: 65 ESVAFLYE---KFPKLRENILGQDFLRMDLNEVFD-GRQFVLTGNYPYDISSQIFFKMLE 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P T + Q+EV +R+ A S YG LSVL +F + +VF P P Sbjct: 121 YKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPPP 177 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAG 254 KV S VI + + I C K++ + F +RRK LR SL+++ + ++ Sbjct: 178 KVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQD 237 Query: 255 IETNLRAENLSIEDFCRITNILTDNQDI 282 I T R E LSI F +TN++ + I Sbjct: 238 IMTK-RPEQLSIAQFVELTNMVEEQLKI 264 >gi|300778905|ref|ZP_07088763.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910] gi|300504415|gb|EFK35555.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910] Length = 256 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/270 (35%), Positives = 127/270 (47%), Gaps = 30/270 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D NI +KI E + ++E+G G G LT+ LL EKDQ Sbjct: 6 KKHLGQHFLTDENIARKIVEGLSFENYNNIMEVGPGMGVLTKYLL----------EKDQN 55 Query: 82 FFPILKDISSQHPNRL---------EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 + L +I ++ L E D LK DF F I II N PYNI ++ Sbjct: 56 IY--LAEIDTESIEYLKNNYTKVTEETFVGDFLKQDFN--FIKEDQIAIIGNFPYNISSQ 111 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +LF + P + +FQKEV ER A + YG LSVL + MF + Sbjct: 112 ILFQIVDHYQLIP---EMVGMFQKEVAERTAAVPRTKDYGILSVLIQAYYDVSYMFTVHE 168 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLH 251 +VF P PKV S VI + E L K+I + F +RRK L +LK L L Sbjct: 169 NVFNPPPKVKSGVIRLTRNPKEGLAGNEVLFKQIVKAGFNQRRKKLSNALKILNTPEAL- 227 Query: 252 QAGIE-TNLRAENLSIEDFCRITNILTDNQ 280 G E + RAE LS+ DF N+ +NQ Sbjct: 228 -KGHEFLDKRAEELSVADFIHFANLWKENQ 256 >gi|148886595|sp|Q4A775|RSMA_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|144575570|gb|AAZ54014.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448] Length = 259 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 17/267 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +PKK++GQNFL D I +KI E+ L +IEIG G G LT LL A+ V E Sbjct: 3 KPVPKKHLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-RAKFVTCYE 60 Query: 78 KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ PIL + N+ L II +D L + E IIANLPY I +++LF Sbjct: 61 IDRNLIPIL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFK 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I A+ ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FF Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFF 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252 P PKV S V+ F N +E T++ F +RKTL + L + E + + Sbjct: 171 PKPKVNSAVVLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257 >gi|325680208|ref|ZP_08159773.1| dimethyladenosine transferase [Ruminococcus albus 8] gi|324108157|gb|EGC02408.1| dimethyladenosine transferase [Ruminococcus albus 8] Length = 286 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 138/278 (49%), Gaps = 18/278 (6%) Query: 3 MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+N S+ +K ++ + K +GQNFL++ ++ +IAE + G VIEIG G G Sbjct: 1 MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKKGFGVIEIGTGVGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LT L A KV+ IE D + P+L++ ++H N +++I D ++VD K Sbjct: 61 LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMEVDLHKLIEEEFDGL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + + ANLPY I + +L + S+T++ QKE G R+ A + G ++V Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRLR---IRSVTVMVQKEAGTRLCAPVGTRDMGAVTVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRK 235 + + ++F++S F P+P V S V+ F I P E+ K+ + AF +RRK Sbjct: 176 VNYFSAPKILFNVSRGSFMPAPNVDSCVVRFDIKEDTPAGVTDEAFFFKMVRAAFSQRRK 235 Query: 236 TLRQS------LKRLGGENLLHQAGIETNLRAENLSIE 267 TL S L + + +G+ +R E L +E Sbjct: 236 TLVNSVSSGMGLDKAAVTKAVENSGLPAAVRPEQLKME 273 >gi|307324292|ref|ZP_07603500.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113] gi|306890023|gb|EFN21001.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113] Length = 289 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++G V+E+G G G+LT LL Sbjct: 15 IRALAARLGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L + ++ P+R + ++ DAL+V +P ++ANL Sbjct: 74 ADRVTAVEIDDVLAAALPATVEARLPHRADHFALVHHDALRV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 131 PYNVAVPVLLHMLGRF---PTIERTLVMVQAEVADRLAAPPGSKVYGVPSVKAAWYAHVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR----- 238 I +VF+P+P V S ++ I P+ E + + AF +RRKTLR Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLIRRDEPLRTTATREEVFAVVDAAFAQRRKTLRAALAG 247 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++EDF I Sbjct: 248 WAGSAGAAEEALKAAGVSPQARGESLTVEDFAAIAE 283 >gi|282856259|ref|ZP_06265542.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455] gi|282586018|gb|EFB91303.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455] Length = 269 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 8/253 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQNFL + + ++ E+ G V+EIG G G LT+ LL R V +E D++ Sbjct: 8 KISLGQNFLNNPAVARRCLEAGGLNSEDVVLEIGPGQGALTRALLQSPCRFVHALEIDRR 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L+ + + HP R EI DAL D + F + P +++AN+PYNI T L++ I + Sbjct: 68 LAPWLEPLRAGHPGRFEISWGDALSADLRELFPL--PNKVLANIPYNITTELIWK-ILVE 124 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P E L LL QKE +R+ A + L + + + ++P F P PKV Sbjct: 125 LGPRRLERLILLVQKEAADRLNAPPATKGRSPLGITLEQMSAVRTLMKVAPGSFNPPPKV 184 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GEN----LLHQAGIE 256 S +I N +++ AF +RRK L +L G G++ +L AGI+ Sbjct: 185 WSALISIDLEENLDLAASPPWRRLLAAAFAQRRKKLANNLAAAGYGKDRIATILSSAGID 244 Query: 257 TNLRAENLSIEDF 269 RAE L+ + Sbjct: 245 PMSRAEELTASQW 257 >gi|323344894|ref|ZP_08085118.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269] gi|323094164|gb|EFZ36741.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269] Length = 269 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 136/263 (51%), Gaps = 13/263 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL DL+I K+IA++ + I ++EIG G G LTQ L+T R+V +E D+ Sbjct: 6 PKKNLGQHFLTDLSIAKRIADTVDTCPDIPILEIGPGMGVLTQFLVTKN-REVRAVEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L + Q R +II +D L++D F + + + N PY+I +++ F + Sbjct: 65 ESVAFLHENYPQL--RDKIIGEDFLRMDLSTIFGGHTFV-LTGNYPYDISSQIFFKMLE- 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + F T + Q+EV +RI A + G LS+L +F + +VF P PK Sbjct: 121 --YRQFIPCCTGMIQREVAQRIAASPGNKLNGILSILIQAWYNVEYLFTVDENVFDPPPK 178 Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGI 255 V S VI ++ + C K++ + F +RRK LR SL+++ + + + + Sbjct: 179 VKSAVIRMTRNNVTDLGCDEVLFKRLVKAVFNQRRKMLRVSLRQIFNQTKPSAVFYAQDV 238 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 T R E L + F +TNI+ + Sbjct: 239 MTK-RPEQLGVAQFVALTNIVAE 260 >gi|283457073|ref|YP_003361637.1| dimethyladenosine transferase [Bifidobacterium dentium Bd1] gi|283103707|gb|ADB10813.1| KsgA Dimethyladenosine transferase [Bifidobacterium dentium Bd1] Length = 308 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 22/287 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 17 AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 76 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + I+ P+ R +I DAL V E F+ Sbjct: 77 ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 135 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D S ++ QKEV +R+ A+ S YG SV Sbjct: 136 LVANLPYNVATPILLTLLERFDNL----HSFLVMVQKEVADRLAAKPGSKIYGTPSVKLA 191 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPI--PCC-LESLKKITQEA 229 W A I +VF+P+P V S ++ F P + P E++ ++ A Sbjct: 192 WYGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAA 251 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 FG+RRKTL +L+R + AGI+ R E L+I++F + L Sbjct: 252 FGQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 298 >gi|298529691|ref|ZP_07017094.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans ASO3-1] gi|298511127|gb|EFI35030.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans ASO3-1] Length = 258 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 132/263 (50%), Gaps = 22/263 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D+NI +KI ++ V+EIG G G LT LL A V+ +EKD Sbjct: 7 KKSLGQNFLQDMNIARKIVDALEPGHKDRVLEIGPGKGVLT-ALLADRAGLVLGVEKD-- 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +F L + P L+ + DAL++D+ + ++II NLPYNI LL W A Sbjct: 64 YF--LTFALDRCPG-LQAVNMDALQLDWSRLDRWPG-LKIIGNLPYNIAQTLL--WDMAA 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 F + ++ QKEV +RITA YG LS+ T ++F++SP VF P P V Sbjct: 118 GCRSF-DRAVVMVQKEVAQRITAGPGGKEYGALSIWLQSFTTPRVLFNVSPGVFRPRPSV 176 Query: 202 TSTVIHFIPHLNPIPC-----CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQA 253 S+V+ L P+P L ++ + F RRK L + LK + L Q Sbjct: 177 DSSVL----ELRPLPADKIFFVPRDLARVVKTMFQNRRKQLGRILKTYWNDRRKIALEQC 232 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 G++ R E LS EDF ++ L Sbjct: 233 GLDPRARPEQLSPEDFQGLSKCL 255 >gi|330465668|ref|YP_004403411.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Verrucosispora maris AB-18-032] gi|328808639|gb|AEB42811.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Verrucosispora maris AB-18-032] Length = 290 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 19/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+LT LL + Sbjct: 11 IRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTGDDVALEVGPGLGSLTLALLPVA 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L D +++H RL + DAL++ + + +P ++ANL Sbjct: 71 A-HVHAVEIDPTLAAALPDTAARHAGPHAARLTVHHADALRITGAELTD-PAPTALVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P L ++ QKEV +R+ A S YG SV W A Sbjct: 129 PYNVAVPVVLHLLA--VLPSLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWYAHAR 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLR---- 238 + P+VF+P P V S ++ F P +P E + + AF +RRKTLR Sbjct: 186 AAGKVPPNVFWPVPNVDSGLVAFTRREPPRADVP--REQVFAVVDAAFAQRRKTLRAALA 243 Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 + L AG++ R E+L++E F + Sbjct: 244 GWAGGADRAAAALTAAGVDPGARGESLTVEQFAAVA 279 >gi|225023033|ref|ZP_03712225.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii ATCC 33806] gi|224944256|gb|EEG25465.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii ATCC 33806] Length = 302 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 138/277 (49%), Gaps = 17/277 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLT 67 ++T+ S I P K +GQNFL D N ++ I ++ D V+E+G G G+LT L+T Sbjct: 25 IRTLASELDITPTKKLGQNFLHDPNTVRMIITTAQFTDVTNRHVLEVGPGLGSLTLGLVT 84 Query: 68 LGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 KV IE D + L + + H ++L + DAL V + + P ++A Sbjct: 85 -ACEKVTAIEIDPRLAARLPRTIAEFAPDHADQLTVSNRDALTVSPQDIDMSTPPTALVA 143 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + ++ P + ++ Q EV +R+ A+ + YG SV + + Sbjct: 144 NLPYNVSVPILLHLLAEF---PSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAFYGQ 200 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLK 242 I +VF+P+PK+ S ++ I +P L +++ + AF +RRKTLR +L Sbjct: 201 VRRAGTIGKNVFWPAPKIDSGLVS-IDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAALS 259 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 + G E L +A I+ LR E L I DF R+ Sbjct: 260 GVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLAT 296 >gi|124515833|gb|EAY57342.1| putative dimethyladenosine transferase [Leptospirillum rubarum] Length = 256 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 134/230 (58%), Gaps = 16/230 (6%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G L+ +L T+ + ++E+D+Q L+ S+ P + I+++DA++ F Sbjct: 12 ILEIGPGKGILSGVLATM-TEDLWLVERDRQLAETLRKTFSETPG-VRILEEDAMEFSFG 69 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 N SP +++NLPYNI L ++++D +PP + + L+FQ+EV +R+ A+ P Sbjct: 70 ---NDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDPD 123 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230 YG LSV+T + + D++P F+P+PKV S+V+ +P L+ C + ++++ F Sbjct: 124 YGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVVTVLP-LSVQDECTWAAISLSRKLF 182 Query: 231 GKRRKTLRQSLKRL--GGENLLHQAGIET-----NLRAENLSIEDFCRIT 273 RRK+L ++L+ G E+LL +T + + ++LS EDF ++ Sbjct: 183 CYRRKSLGRALRTAFSGEESLLDGTFFKTETDFFSRKVDSLSPEDFRKLA 232 >gi|255560978|ref|XP_002521501.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223539179|gb|EEF40772.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 366 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 114/225 (50%), Gaps = 12/225 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 S K+ K GQ+ L + +L I S TV+EIG G GNLT LL + ARKV+ Sbjct: 47 SQEKLHLYKSKGQHLLTNPRVLDTIVRRSAVEPTDTVLEIGPGTGNLTLRLLEV-ARKVV 105 Query: 75 VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +E D++ IL++ +S+ ++L+II DALK +F F NI ++AN+PY I + Sbjct: 106 AVEIDKRMVEILRERASEQGLQDKLDIIHKDALKAEFPNF-NI-----VVANIPYGISSP 159 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+ + + SLTLL QKE R+ A P Y RL+V + D+S Sbjct: 160 LVTKLVYGVNK---FRSLTLLLQKEFARRLLANPGDPEYNRLAVNVKLVADVEFVMDVSK 216 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 F PSPKV S+V+ P L + T+ FG + KTL Sbjct: 217 RDFVPSPKVDSSVVIIRPKTEIPSVNLVEWRAFTRTCFGNKNKTL 261 >gi|154486326|ref|ZP_02027733.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis L2-32] gi|154084189|gb|EDN83234.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 31/304 (10%) Query: 1 MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51 MT N H+ ++ I + I P K GQNF++D +++I +G V Sbjct: 6 MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 65 Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKV 107 +E+G G G+LT +L GA + +E D L K I+ P+ R ++ DAL V Sbjct: 66 LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 124 Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITA 164 + E F ++ANLPYN+ T +L + D F ++ QKEV +R++ Sbjct: 125 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSE 180 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPIPC 217 + S YG SV W + I +VF+P+P V S ++ F P + Sbjct: 181 KPGSKIYGTPSVKLAWYGTTERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADG 240 Query: 218 CL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E++ ++ AFG+RRKTL +LK++ +AGI+ R E L+I++F + Sbjct: 241 SVVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALAR 300 Query: 275 ILTD 278 L + Sbjct: 301 ALDE 304 >gi|148886596|sp|Q4A936|RSMA_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|144227742|gb|AAZ44735.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae J] Length = 259 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 17/267 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +PKK++GQNFL D I +KI E+ L +IEIG G G LT LL A+ V E Sbjct: 3 KPVPKKHLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYE 60 Query: 78 KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ PIL + N+ L II +D L + E IIANLPY I +++LF Sbjct: 61 IDRNLIPIL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFK 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I A+ ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FF Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFF 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252 P PK+ S V+ F N E T++ F +RKTL + L + E + + Sbjct: 171 PKPKINSAVVFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257 >gi|158521647|ref|YP_001529517.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3] gi|226729778|sp|A9A0E0|RSMA_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158510473|gb|ABW67440.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3] Length = 289 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 22/287 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S +TILS + I PKK +GQNFL D + I G V+E+G G G LT + Sbjct: 3 SPRTILSGHDIAPKKSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALT-IPAAG 61 Query: 69 GARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLP 126 A V IE D + LK+ + + + + ++ D +K D + + ++ NLP Sbjct: 62 QAAWVYAIETDGRLIEPLKETVRAAGLDNVTVLHRDIMKTDIREICREAGRKLVVLGNLP 121 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I +++L + + + L+FQ+E+ RI A + YGR+SV + + + Sbjct: 122 YYISSQILMDLVEKRE---AVDRAVLMFQQELARRIAAPPGNREYGRISVALRYCAELST 178 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESL-KKITQEAFGKRRKTLRQSLK 242 + + P++FFP P V S V+ + P P C E+L + + AF RRKT++ +L Sbjct: 179 VARLKPNLFFPRPGVDSEVVRIV--FRPWPGNRDCDEALFFAMIKSAFATRRKTIKNALS 236 Query: 243 R-------LGGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279 E LL +A + +RAE L + DF CR ++ N Sbjct: 237 AGMTKISPSAWEELLVRADVAPTVRAETLDVGDFLNICRHYKAMSGN 283 >gi|148643434|ref|YP_001273947.1| dimethyladenosine transferase [Methanobrevibacter smithii ATCC 35061] gi|148552451|gb|ABQ87579.1| dimethyladenosine transferase, KsgA [Methanobrevibacter smithii ATCC 35061] Length = 303 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 13/207 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + K IL+ Y I K +GQN+L+D N +I + V+EIG G G LT + L Sbjct: 11 SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLT-IEL 69 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +KVI IE+D IL++ + ++ + +E+I DDAL V+F KF +II+NL Sbjct: 70 AKRVKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKFD------KIISNL 123 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F +++ D ++ L++QKE R+ + S Y RLS + ++ Sbjct: 124 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 178 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL 212 ++ +S F P PKV STV+ P L Sbjct: 179 LLTGVSAESFIPKPKVDSTVVRLTPKL 205 >gi|222445676|ref|ZP_03608191.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii DSM 2375] gi|222435241|gb|EEE42406.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii DSM 2375] Length = 306 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 13/207 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + K IL+ Y I K +GQN+L+D N +I + V+EIG G G LT + L Sbjct: 14 SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLT-IEL 72 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +KVI IE+D IL++ + ++ + +E+I DDAL V+F KF +II+NL Sbjct: 73 AKRVKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKFD------KIISNL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F +++ D ++ L++QKE R+ + S Y RLS + ++ Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL 212 ++ +S F P PKV STV+ P L Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKL 208 >gi|300858098|ref|YP_003783081.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis FRC41] gi|300685552|gb|ADK28474.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis FRC41] gi|302205822|gb|ADL10164.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis C231] gi|302330381|gb|ADL20575.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis 1002] gi|308276057|gb|ADO25956.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis I19] Length = 290 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 132/271 (48%), Gaps = 22/271 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P K +GQNF+ D N ++ I ++ V+EIG G G+LT LL AR V +E Sbjct: 24 VTPTKKLGQNFVHDPNTVRMIVSAADLTADDHVVEIGPGLGSLTLALLDT-ARSVTAVEI 82 Query: 79 D----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 D +Q + + + +RL ++ DAL+V E+ I P ++ANLPYN+ +L Sbjct: 83 DPRLAEQLPMTVAERAPMFSDRLTLVHKDALQVTAEE---IGQPTALVANLPYNVSVPVL 139 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 +++ P + + ++ Q EV +R+ AQ + YG SV + I +V Sbjct: 140 LHFLQIF---PSIQRVLVMVQAEVADRLAAQPGTKVYGVPSVKASFYGSVRRAGSIGKNV 196 Query: 195 FFPSPKVTSTVIH---FIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGG-- 246 F+P+PK+ S ++ F P E ++ AF +RRKTLR +L G Sbjct: 197 FWPAPKIESGLVRIDVFTQDNQPWEVGDELRSQVFPLIDAAFAQRRKTLRAALSGYYGSG 256 Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITN 274 E+ L AGI+ LR E L + DF R+ Sbjct: 257 AAAESALLGAGIDPTLRGEKLDVADFVRLAQ 287 >gi|283458615|ref|YP_003363250.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18] gi|283134665|dbj|BAI65430.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18] Length = 290 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 20/276 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I P K +GQNF++D N +++I ++ TV+E+G G G+LT +L Sbjct: 12 IRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGILD-A 70 Query: 70 ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIAN 124 A+ ++ +E D QQ ++ + + ++++ DALKV + + +P ++AN Sbjct: 71 AKDMVAVEIDPPLAQQLPHTIEKFRPEKADDIDVVLMDALKVTELPR-----TPDALVAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + +P +L ++ Q EV +R++A S YG SV W + Sbjct: 126 LPYNVAVPVLLHLFA--QFPSIRHALVMV-QDEVADRLSATPGSKIYGVPSVKANWYAEV 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 I +VF+P+PK+ S ++ F P+ L I AF +RRKTLR +L Sbjct: 183 YKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAALSS 242 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E +L AGI R E L I F RI Sbjct: 243 WAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAE 278 >gi|171741750|ref|ZP_02917557.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC 27678] gi|171277364|gb|EDT45025.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC 27678] Length = 316 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 22/287 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 25 AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + I+ P+ R +I DAL V E F+ Sbjct: 85 ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143 Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ T +L + D S ++ QKEV +R+ A+ S YG SV Sbjct: 144 LVANLPYNVATPILLTLLERFDNL----HSFLVMVQKEVADRLAAKPGSKIYGTPSVKLA 199 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPI--PCC-LESLKKITQEA 229 W A I +VF+P+P V S ++ F P + P E++ ++ A Sbjct: 200 WYGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAA 259 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 FG+RRKTL +L+R + AGI+ R E L+I++F + L Sbjct: 260 FGQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 306 >gi|312601595|gb|ADQ90850.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma hyopneumoniae 168] Length = 259 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 17/267 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +PKK++GQNFL D I +KI E+ L +IEIG G G LT LL A+ V E Sbjct: 3 KPVPKKHLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYE 60 Query: 78 KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ PIL + N+ L II +D L + E IIANLPY I +++LF Sbjct: 61 IDRNLIPIL---EKKFKNKNLRIINEDFLLAELES----KEKKTIIANLPYYITSKILFK 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I A+ ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FF Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFF 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252 P PKV S V+ F N E T++ F +RKTL + L + E + + Sbjct: 171 PKPKVNSAVVFFDFRENLEAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257 >gi|283851060|ref|ZP_06368344.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B] gi|283573456|gb|EFC21432.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B] Length = 289 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 12/260 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PK+ +GQNFL D N +I + G TVIEIG G G L+ +L G R +V+EKD+ Sbjct: 32 PKRSLGQNFLQDPNTAARIVANLGITPADTVIEIGPGRGALSGHILDAGPRAYLVVEKDR 91 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + +++ HP + DAL++D+ + ++ +++I NLPYNI + LL++ ISA Sbjct: 92 D---LAARLAASHPG-ANVALADALRLDWSRIDRLAD-VKLIGNLPYNIASPLLWD-ISA 145 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + Q EV R+ A YG L+ ++ F + P VF P PK Sbjct: 146 GAC--LFRRGVFMVQHEVALRLAAAPGGRAYGALTAWVAGFSRVQYCFKVPPTVFRPQPK 203 Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGIE 256 V S V+ P P ++L K+ + F RRK L LKR+ +++ G++ Sbjct: 204 VDSAVVALTPLPAGERPADPKALSKLLKLLFSLRRKQLGHILKRVWDDDVAAYFAGQGLD 263 Query: 257 TNLRAENLSIEDFCRITNIL 276 + R ENLS + + +L Sbjct: 264 SRDRPENLSPQQLSGLATLL 283 >gi|331694705|ref|YP_004330944.1| ribosomal RNA small subunit methyltransferase A [Pseudonocardia dioxanivorans CB1190] gi|326949394|gb|AEA23091.1| Ribosomal RNA small subunit methyltransferase A [Pseudonocardia dioxanivorans CB1190] Length = 284 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 128/275 (46%), Gaps = 18/275 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLT 67 ++ + I P K +GQNF+ D N +++I +++ GS D V+E+G G G+LT LL Sbjct: 12 VRGLAERLGIRPTKKLGQNFVHDPNTVRRIVKAAELGSDD--VVVEVGPGLGSLTLALLP 69 Query: 68 LGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 A V +E D Q + + + +RL + DA++V + P I+A Sbjct: 70 AVA-AVHAVEIDPVLAAQLPATVAEFAPGLADRLTVTTADAVRVRAAELAG-PVPTAIVA 127 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+G +L + ++ P L ++ Q EV +R+ A S YG S W Sbjct: 128 NLPYNVGVPVLLHLLA--ELPGIRRGL-VMVQAEVADRLAAPPGSKTYGVPSAKLAWFAD 184 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 A + VF+P P V S ++ F P + + AF +RRK LR +L Sbjct: 185 ARRAGPVPRAVFWPVPNVDSGLLAFTCRPAPSDVPRADVFAVVDAAFAQRRKALRSALAG 244 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E L AGI+ RAE L I DF RI Sbjct: 245 WAGSPPAAEQALTTAGIDPLTRAERLGITDFARIA 279 >gi|15669218|ref|NP_248023.1| dimethyladenosine transferase [Methanocaldococcus jannaschii DSM 2661] gi|27151565|sp|Q58435|RSMA_METJA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|1591684|gb|AAB99033.1| dimethyladenosine transferase (ksgA) [Methanocaldococcus jannaschii DSM 2661] Length = 275 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ Sbjct: 4 PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139 P + + N +EII DALKVD K FN +++ANLPY I + + F I Sbjct: 63 SLEPYANKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIK 116 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ L++Q E +R+ A++ + YGRLSV R ++ + P F+P P Sbjct: 117 RG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKP 171 Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 KV S ++ P+ E+ + F R K++R++L Sbjct: 172 KVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 214 >gi|307718556|ref|YP_003874088.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192] gi|306532281|gb|ADN01815.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192] Length = 283 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 17/267 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +++ + + K GQ+FL+ ++L +I ++ G V EIG G G LT LL G Sbjct: 10 MRELMARHGLSALKRFGQHFLVRDDVLGRIVQALDLHPGEQVWEIGPGIGALTAHLLDEG 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +V+ E D+ F IL++ P L I++ D ++ + + P R++ NLPYN+ Sbjct: 70 V-EVVGFEIDRGFVSILREEFGGAP--LTIVEGD-VRDTWRTVYATRVPHRVVGNLPYNV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ +++ P + QKEV ER+ A S YG LSV+ + ++F Sbjct: 126 ATSIILDFLEGGLIVP----QVFMVQKEVAERMAASVGSSAYGALSVIVATFYRCELLFH 181 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL---- 244 + P F P PKV S+V+ P +P+P + + F RRK L+ L R Sbjct: 182 VPPTAFHPRPKVWSSVLRLHPVASPVPREHIPPFLSFVWDLFRYRRKMLKNVLLRSPLAA 241 Query: 245 ----GGENLLHQAGIETNLRAENLSIE 267 G +LL + GI+ LRAE L ++ Sbjct: 242 RGVEGVVSLLERVGIDPTLRAEQLPLD 268 >gi|115372809|ref|ZP_01460115.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] gi|115370290|gb|EAU69219.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] Length = 286 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 19/287 (6%) Query: 1 MTMNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M K H S + IL + + K GQNFL D L+ IA++ G V+E+G G Sbjct: 1 MADVRKGHVESPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGL 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 G+LT+ L GA +V +E+D+ +L+ + P + ++ +A VDF + + Sbjct: 61 GHLTRFLAATGA-QVTAVERDRDMISVLEKEAI--PG-VRVVAGNAATVDFAQAAGVPQ- 115 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 + ++ NLPY++ + +LF + QKEV ER+ A+ + YG LSVL Sbjct: 116 VAVVGNLPYHLTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLL 172 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKT 236 G +F + +F P PKV S V+ +P+ + E ++ + +F RRKT Sbjct: 173 GLHFGIEHLFTLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKT 232 Query: 237 LRQSLKR----LGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276 L SLK E +H AGI+ RAE LS ++F + L Sbjct: 233 LLNSLKSDRTLATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 279 >gi|284928980|ref|YP_003421502.1| dimethyladenosine transferase [cyanobacterium UCYN-A] gi|284809439|gb|ADB95144.1| dimethyladenosine transferase [cyanobacterium UCYN-A] Length = 274 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 15/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P+K GQ++L D +L++I +S+ V+EIG G G LT LL V IE Sbjct: 2 IYPRKRFGQHWLKDNTVLERIIKSAHLTKIDKVLEIGPGTGILTSRLLP-EVSSVTAIEV 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVD-FEKF--FNISSPI-RIIANLPYNIGTRLL 134 D+ + L + L ++Q+D LK+D F + +N+ P+ +++AN+PYNI +L Sbjct: 61 DRDLYEQLVK-KFHYCKNLLLLQEDILKIDLFTEISNYNLFWPMNKVVANIPYNITNPIL 119 Query: 135 FNWISADTWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + + + P P+ E + LL QKEV +RITA + YG LS + + D+ Sbjct: 120 EKLLGSVSEPYNLPY-EIIVLLVQKEVAKRITALPGNKMYGALSAKIQYLAHCNYICDVP 178 Query: 192 PHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---- 246 F+P+PKV S +I PH L+ L+K+ F RRK L +LK + Sbjct: 179 SKAFYPAPKVDSAIITLRPHILDSSVLNRPHLEKLINLGFSSRRKMLHNNLKSIMDIKYI 238 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L + ++ +RAENLSI + ++N L Sbjct: 239 TEFLEKNNLDLKVRAENLSINQWIELSNYL 268 >gi|253799960|ref|YP_003032961.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 1435] gi|253321463|gb|ACT26066.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 1435] Length = 323 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL GA V +E D Sbjct: 36 PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 94 Query: 81 QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L+ ++H +RL ++ D L + E ++P ++ANLPYN+ L + Sbjct: 95 LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 152 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P +T++ Q EV ER+ A+ S YG SV + + +SP VF+ Sbjct: 153 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 209 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247 P P+V S ++ + +P P +++ AF +RRKT R + + G Sbjct: 210 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 269 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 N L A I+ R E LSI+DF R+ Sbjct: 270 NRLLAASIDPARRGETLSIDDFVRL 294 >gi|150402155|ref|YP_001329449.1| dimethyladenosine transferase [Methanococcus maripaludis C7] gi|166221676|sp|A6VFS2|RSMA_METM7 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|150033185|gb|ABR65298.1| dimethyladenosine transferase [Methanococcus maripaludis C7] Length = 263 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 123/245 (50%), Gaps = 19/245 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D N +KK + D V+E+G G G LT+ L + A+KV VIE D++ Sbjct: 5 KKLGQCFLKDKNFVKKAINRAELTDKDIVLEVGLGEGALTKELAKI-AKKVYVIELDERL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+S+ N +EII DALKVD + FN +I+ANLPY I + + F ++ D Sbjct: 64 KPFADEITSEFEN-VEIIWSDALKVDLKTLGFN-----KIVANLPYQISSPITFKFLEED 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FEVAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S ++ E KK+ + F R +T++++L + H+ GIE N+ Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAIFQHRNRTIKRALI-----DSSHEIGIERNIL 227 Query: 261 AENLS 265 E L Sbjct: 228 KEILE 232 >gi|325853921|ref|ZP_08171437.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A] gi|325484258|gb|EGC87188.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A] Length = 274 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I +IA++ + I V+EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L + + P R II +D L++D + F+ + N PY+I +++ F Sbjct: 63 DAESVAYLYE---KFPRLRENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKM 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P T + Q+EV R+ A S YG LSVL +F + +VF P Sbjct: 119 LDYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNP 175 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + + C K++ + F +RRK LR SL++L E Sbjct: 176 PPKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPTDGFYE 235 Query: 257 TNL---RAENLSIEDFCRITNILTDNQDIA 283 ++ R E LSI +TN++ + ++A Sbjct: 236 QDIMTKRPEQLSIPQLVGLTNMVAEQLELA 265 >gi|15608150|ref|NP_215526.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Rv] gi|15840438|ref|NP_335475.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551] gi|31792201|ref|NP_854694.1| dimethyladenosine transferase [Mycobacterium bovis AF2122/97] gi|121636939|ref|YP_977162.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660792|ref|YP_001282315.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra] gi|148822220|ref|YP_001286974.1| dimethyladenosine transferase [Mycobacterium tuberculosis F11] gi|167968132|ref|ZP_02550409.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra] gi|215402826|ref|ZP_03415007.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987] gi|215410613|ref|ZP_03419421.1| dimethyladenosine transferase [Mycobacterium tuberculosis 94_M4241A] gi|215429871|ref|ZP_03427790.1| dimethyladenosine transferase [Mycobacterium tuberculosis EAS054] gi|218752682|ref|ZP_03531478.1| dimethyladenosine transferase [Mycobacterium tuberculosis GM 1503] gi|219556877|ref|ZP_03535953.1| dimethyladenosine transferase [Mycobacterium tuberculosis T17] gi|224989411|ref|YP_002644098.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo 172] gi|254231305|ref|ZP_04924632.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C] gi|254363926|ref|ZP_04979972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str. Haarlem] gi|254549996|ref|ZP_05140443.1| dimethyladenosine transferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185921|ref|ZP_05763395.1| dimethyladenosine transferase [Mycobacterium tuberculosis CPHL_A] gi|260200039|ref|ZP_05767530.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46] gi|260204228|ref|ZP_05771719.1| dimethyladenosine transferase [Mycobacterium tuberculosis K85] gi|289442431|ref|ZP_06432175.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46] gi|289446592|ref|ZP_06436336.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CPHL_A] gi|289555207|ref|ZP_06444417.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 605] gi|289568987|ref|ZP_06449214.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17] gi|289573650|ref|ZP_06453877.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85] gi|289744746|ref|ZP_06504124.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987] gi|289753071|ref|ZP_06512449.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis EAS054] gi|289761146|ref|ZP_06520524.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM 1503] gi|294995200|ref|ZP_06800891.1| dimethyladenosine transferase [Mycobacterium tuberculosis 210] gi|297633537|ref|ZP_06951317.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN 4207] gi|297730522|ref|ZP_06959640.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN R506] gi|298524506|ref|ZP_07011915.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|306775146|ref|ZP_07413483.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu001] gi|306781939|ref|ZP_07420276.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu002] gi|306783706|ref|ZP_07422028.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu003] gi|306788061|ref|ZP_07426383.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu004] gi|306792394|ref|ZP_07430696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu005] gi|306796797|ref|ZP_07435099.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu006] gi|306806862|ref|ZP_07443530.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu007] gi|306971253|ref|ZP_07483914.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu010] gi|307078981|ref|ZP_07488151.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu011] gi|307083542|ref|ZP_07492655.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu012] gi|313657851|ref|ZP_07814731.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Mycobacterium tuberculosis KZN V2475] gi|54037708|sp|P66661|RSMA_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54041549|sp|P66660|RSMA_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221680|sp|A1KHE8|RSMA_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221681|sp|A5U153|RSMA_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807874|sp|C1AM01|RSMA_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2052147|emb|CAB08137.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Mycobacterium tuberculosis H37Rv] gi|13880609|gb|AAK45289.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551] gi|31617789|emb|CAD93898.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Mycobacterium bovis AF2122/97] gi|121492586|emb|CAL71054.1| Probable dimethyladenosine transferase ksgA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600364|gb|EAY59374.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C] gi|134149440|gb|EBA41485.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str. Haarlem] gi|148504944|gb|ABQ72753.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra] gi|148720747|gb|ABR05372.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis F11] gi|224772524|dbj|BAH25330.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289415350|gb|EFD12590.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46] gi|289419550|gb|EFD16751.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CPHL_A] gi|289439839|gb|EFD22332.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 605] gi|289538081|gb|EFD42659.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85] gi|289542741|gb|EFD46389.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17] gi|289685274|gb|EFD52762.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987] gi|289693658|gb|EFD61087.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis EAS054] gi|289708652|gb|EFD72668.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM 1503] gi|298494300|gb|EFI29594.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|308216296|gb|EFO75695.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu001] gi|308325330|gb|EFP14181.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu002] gi|308331489|gb|EFP20340.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu003] gi|308335295|gb|EFP24146.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu004] gi|308339103|gb|EFP27954.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu005] gi|308342775|gb|EFP31626.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu006] gi|308346684|gb|EFP35535.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu007] gi|308359187|gb|EFP48038.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu010] gi|308363121|gb|EFP51972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu011] gi|308366753|gb|EFP55604.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu012] gi|323720511|gb|EGB29593.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CDC1551A] gi|326904763|gb|EGE51696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis W-148] gi|328459703|gb|AEB05126.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 4207] Length = 317 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL GA V +E D Sbjct: 30 PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 88 Query: 81 QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L+ ++H +RL ++ D L + E ++P ++ANLPYN+ L + Sbjct: 89 LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 146 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P +T++ Q EV ER+ A+ S YG SV + + +SP VF+ Sbjct: 147 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 203 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247 P P+V S ++ + +P P +++ AF +RRKT R + + G Sbjct: 204 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 263 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 N L A I+ R E LSI+DF R+ Sbjct: 264 NRLLAASIDPARRGETLSIDDFVRL 288 >gi|308376581|ref|ZP_07439351.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu008] gi|308377580|ref|ZP_07479724.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu009] gi|308350599|gb|EFP39450.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu008] gi|308355232|gb|EFP44083.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu009] Length = 320 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL GA V +E D Sbjct: 33 PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 91 Query: 81 QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L+ ++H +RL ++ D L + E ++P ++ANLPYN+ L + Sbjct: 92 LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 149 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P +T++ Q EV ER+ A+ S YG SV + + +SP VF+ Sbjct: 150 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 206 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247 P P+V S ++ + +P P +++ AF +RRKT R + + G Sbjct: 207 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 266 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 N L A I+ R E LSI+DF R+ Sbjct: 267 NRLLAASIDPARRGETLSIDDFVRL 291 >gi|327313931|ref|YP_004329368.1| dimethyladenosine transferase [Prevotella denticola F0289] gi|326944358|gb|AEA20243.1| dimethyladenosine transferase [Prevotella denticola F0289] Length = 279 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I +IA++ + I V+EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L + + P R II +D L++D + F+ + N PY+I +++ F Sbjct: 63 DAESVAYLYE---KFPRLRENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKM 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P T + Q+EV R+ A S YG LSVL +F + +VF P Sbjct: 119 LDYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNP 175 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + + C K++ + F +RRK LR SL++L E Sbjct: 176 PPKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADGFYE 235 Query: 257 TNL---RAENLSIEDFCRITNILTDNQDIA 283 ++ R E LSI +TN++ + ++A Sbjct: 236 QDIMTKRPEQLSIPQLVGLTNMVAEQLELA 265 >gi|289749539|ref|ZP_06508917.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T92] gi|289690126|gb|EFD57555.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T92] Length = 318 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL GA V +E D Sbjct: 30 PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 88 Query: 81 QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L+ ++H +RL ++ D L + E ++P ++ANLPYN+ L + Sbjct: 89 LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 146 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P +T++ Q EV ER+ A+ S YG SV + + +SP VF+ Sbjct: 147 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 203 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247 P P+V S ++ + +P P +++ AF +RRKT R + + G Sbjct: 204 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 263 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 N L A I+ R E LSI+DF R+ Sbjct: 264 NRLLAASIDPARRGETLSIDDFVRL 288 >gi|209519022|ref|ZP_03267830.1| dimethyladenosine transferase [Burkholderia sp. H160] gi|209500534|gb|EEA00582.1| dimethyladenosine transferase [Burkholderia sp. H160] Length = 280 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 19/267 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H + +K GQNFL+D+ ++ I + G ++EIG G G LT+ L L Sbjct: 10 HQGHLARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK + + LE+ DAL+ DF ++++P +RI+ NLPY Sbjct: 70 LHAVELDRDLIGRLK---KKFGDLLELHAGDALEFDFG---SLAAPGEKASLRIVGNLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ T+ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 124 NISSPLLFHLA---TFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P PKV S ++ IP+ L+ +P E+ L ++ AF +RRK LR +L L Sbjct: 181 LDVPPEAFQPPPKVDSAIVRMIPYELHELPVVDENVLGEVVTAAFSQRRKMLRNTLGALR 240 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272 G + RAE++ + ++ + Sbjct: 241 DTVDFDALGFDLQRRAEDVPVAEYVSV 267 >gi|310823436|ref|YP_003955794.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] gi|309396508|gb|ADO73967.1| Dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] Length = 278 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 17/277 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + IL + + K GQNFL D L+ IA++ G V+E+G G G+LT+ L Sbjct: 3 SPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGLGHLTRFLAAT 62 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GA +V +E+D+ +L+ + P + ++ +A VDF + + + ++ NLPY+ Sbjct: 63 GA-QVTAVERDRDMISVLEKEAI--PG-VRVVAGNAATVDFAQAAGVPQ-VAVVGNLPYH 117 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + + +LF + QKEV ER+ A+ + YG LSVL G +F Sbjct: 118 LTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLLGLHFGIEHLF 174 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR--- 243 + +F P PKV S V+ +P+ + E ++ + +F RRKTL SLK Sbjct: 175 TLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKTLLNSLKSDRT 234 Query: 244 -LGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276 E +H AGI+ RAE LS ++F + L Sbjct: 235 LATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 271 >gi|314929244|gb|EFS93075.1| dimethyladenosine transferase [Propionibacterium acnes HL044PA1] gi|314972363|gb|EFT16460.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA3] gi|328908355|gb|EGG28114.1| dimethyladenosine transferase [Propionibacterium sp. P08] Length = 298 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 26/286 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66 S++ I + P K GQNF+ D N +++I + GS D VIE+G G G+LT LL Sbjct: 11 SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSED--RVIEVGPGLGSLTLGLL 68 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122 GA +V+ +E D+ L D I+ + P RL+++ DAL V K + P ++ Sbjct: 69 ETGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTALV 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 125 ANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWYA 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCLES-LKKITQEAFGKRRKT 236 +AT + ++ P VF+P P V S ++ P P S + ++ AF RRK Sbjct: 182 EATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRKM 241 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 242 LRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287 >gi|260910119|ref|ZP_05916796.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str. F0295] gi|260635623|gb|EEX53636.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str. F0295] Length = 267 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 29/269 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL I ++IA++ + + ++E+G G G LTQ L T R + V+E D Sbjct: 6 PKKHLGQHFLTDLGIARRIADTVDACPELPILEVGPGMGVLTQYLAT-KERPLRVVEIDT 64 Query: 81 QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + FP+L + ++ +D L++D + F+ P + N PY+I +++ Sbjct: 65 ESVEYLHKNFPLLAE---------NVLGEDFLRMDLDGVFS-GQPFVLTGNYPYDISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + Q+EV RI +Q + YG LSVL +F + Sbjct: 115 FFKMLDNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDET 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL-----GGE 247 VF P PKV S VI + C E+L K++ + F +RRK LR SL++L Sbjct: 172 VFNPPPKVKSAVIRMTRNAVENLGCNEALFKRVVKTVFNQRRKMLRVSLRQLFAGMPASP 231 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 Q R E LS+ +F ++TN++ Sbjct: 232 EFYAQEMF--TRRPEQLSVAEFVQLTNMV 258 >gi|326383797|ref|ZP_08205482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Gordonia neofelifaecis NRRL B-59395] gi|326197561|gb|EGD54750.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Gordonia neofelifaecis NRRL B-59395] Length = 311 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 23/278 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I +SG V+E+G G G+LT LL Sbjct: 29 IRALAAELDVRPTKTLGQNFVHDANTVRRIVTASGIGADDVVLEVGPGLGSLTLALLAEA 88 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKV---DFEKFFNISSPIRII 122 R V+ +E D++ L + I+ P + +++ DAL V D + +P ++ Sbjct: 89 GR-VVAVEIDRKLAARLPRTIAEFAPGQAANFDVVTADALGVLPGDLPQ-----TPTALV 142 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ +P +L ++ Q EV +R+ A YG SV + Sbjct: 143 ANLPYNVAVPVLLHLMA--QFPTIRTALVMV-QAEVADRLAATPGGRIYGVPSVKARFFG 199 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 I HVF+P PK+ S ++ P + AF +RRKTLR + Sbjct: 200 DVARAGSIGKHVFWPEPKIESGLVRIDRRDAFGTDPALRSETFAVIDAAFAQRRKTLRSA 259 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L G E LL A I+ LR E +++DF R+ Sbjct: 260 LSSWAGSAPHAEELLRAAEIDPGLRGERCTVDDFVRLA 297 >gi|167901379|ref|ZP_02488584.1| dimethyladenosine transferase [Burkholderia pseudomallei NCTC 13177] Length = 275 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 25/275 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71 H +K GQNFL+D ++ I + G ++EIG G G LT L T G+ Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 + +E D+ ++ + + LE+ DAL DF +I+ P +RII NLP Sbjct: 66 PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R Sbjct: 120 YNISSPLLFHLMS---FAPVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + D+ P F P PKV S ++ IPH + +P + L ++ AF +RRK LR +L Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234 Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277 G +L+ G + RAE++ ++++ R+ + Sbjct: 235 GYRDLVDFDALGFDLARRAEDVGVDEYVRVAQAVA 269 >gi|27151572|sp|Q8PU18|RSMA_METMA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase Length = 271 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 27/280 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +++IL Y I + Q+FL+D L +I ++ TV+EIGAG GNLT+ L Sbjct: 2 VRSILKKYNIKGGTF-DQHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERL-ARR 59 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E D +L D N +EII DALKVDF +F ++++NLPY+I Sbjct: 60 AKKVIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSI 112 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + ++ L++Q E R+ + Y RL++ T + A+++ Sbjct: 113 SSEITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMK 167 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F P+P+V S VI IP P E+ + F +RRK LR ++ L + Sbjct: 168 VPKGAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSS 225 Query: 249 LLHQAGIE----------TNLRAENLSIEDFCRITNILTD 278 LL I+ N RAE+L+ E+ + N++ D Sbjct: 226 LLKIPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 265 >gi|294629824|ref|ZP_06708384.1| dimethyladenosine transferase [Streptomyces sp. e14] gi|292833157|gb|EFF91506.1| dimethyladenosine transferase [Streptomyces sp. e14] Length = 296 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 135/276 (48%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++G V+E+G G G+LT LL Sbjct: 6 VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVGPGLGSLTLALLE-A 64 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V+ +E D L ++++ P +R ++ DA+ V +P ++ANL Sbjct: 65 AERVVAVEIDDVLAGALPATVAARMPERADRFALVHSDAMHV---AELPGPAPTALVANL 121 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + DT+P +L ++ Q EV +R+ A S YG SV W + Sbjct: 122 PYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAAAPGSKVYGVPSVKANWYAEVK 178 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 179 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTSATKREVFAVVDAAFAQRRKTLRAALAG 238 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 239 WAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 274 >gi|13358166|ref|NP_078440.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|6899612|gb|AAF31015.1|AE002158_13 dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 257 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 17/263 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 MGQNFLL NI KI + + ++EIG G G +T++L+ +I IE D++ + Sbjct: 1 MGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILVQ-KTNILIAIELDKRLYA 59 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI---RIIANLPYNIGTRLLFNWI 138 LK + + II +D L VD + +N + I +++ANLPY I ++++ I Sbjct: 60 HLK--TYIKTSNFHIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKII 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + ++ QKE+ ERI A+ N+ Y +VL K ++F+++ F P Sbjct: 118 QSKLINDAY----IMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKILFEVNAKEFHPQ 173 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----G 254 PKV S VIH N + +E L K + F +RK L+ +L + +++Q Sbjct: 174 PKVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLKNNLSNIYDIKIINQMFIDYN 233 Query: 255 IETNLRAENLSIEDFCRITNILT 277 ++ NLRAEN+ + F ++ N L Sbjct: 234 LDMNLRAENIEPKMFLKLFNYLN 256 >gi|284161199|ref|YP_003399822.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631] gi|284011196|gb|ADB57149.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631] Length = 251 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 14/217 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L+D L KI + V+E+G G GNLT++LL +KV IE D +F Sbjct: 5 KSKGQHILVDKKYLYKIVRYADLSYNDVVLEVGCGLGNLTRLLLR-SVKKVYGIEIDSRF 63 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL++ + R +I+ DALKVDF KF + +AN+PY I + L F + Sbjct: 64 CKILREKFADEIESGRFVLIEGDALKVDFPKF------DKFVANIPYQISSPLTFKLLKH 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D ++ + +QKE ER+ A++ S YGRLSV+ +A ++ I P F P PK Sbjct: 118 D-----FKLAVVTYQKEFAERLVAREGSKKYGRLSVVAKAYCRAEILDIIPPKAFRPRPK 172 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S ++ P + E + + + AF +RRK Sbjct: 173 VESAIVRIFPEPEVVVENKEIFEDLVRFAFSRRRKKF 209 >gi|186475168|ref|YP_001856638.1| dimethyladenosine transferase [Burkholderia phymatum STM815] gi|226729765|sp|B2JCX3|RSMA_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|184191627|gb|ACC69592.1| dimethyladenosine transferase [Burkholderia phymatum STM815] Length = 276 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 19/264 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+DL I+ I + G ++EIG G G LT+ L L Sbjct: 9 HQGHFARKRFGQNFLVDLGIIDSIVDVIRPQRGERMVEIGPGLGALTEPLVERLATPEAP 68 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNIG 130 + +E D+ LK + N LE+ + DAL DF +RI+ NLPYNI Sbjct: 69 LHAVELDRDLIGRLK---KKFGNLLELHEGDALAFDFGSLAGEGDKPTLRIVGNLPYNIS 125 Query: 131 TRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + LLF+ + F E + + Q EV ER+ A+ S + RLSV+ +R + Sbjct: 126 SPLLFHLAT------FAERVIDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVIDKL 179 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P PKV S ++ IP+ + +P E L ++ AF +RRK LR +L Sbjct: 180 LDVPPESFQPPPKVDSAIVRMIPYAPHELPAVDEIKLGEVVTAAFSQRRKMLRNTLSTYR 239 Query: 246 GENLLHQAGIETNLRAENLSIEDF 269 G + RAE++ + ++ Sbjct: 240 DSVDFEALGFDLQRRAEDVPVAEY 263 >gi|294872243|ref|XP_002766218.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] gi|239866886|gb|EEQ98935.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] Length = 354 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 13/222 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + IL KI E+S TV+EIG G GNLT LL L A+KV+ +E D + Sbjct: 50 QKKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPR 108 Query: 82 FFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +K +Q R L++I+ DALK F F++ +ANLPY I + F ++ Sbjct: 109 MAAEVKK-RAQTAGRMNLKVIEGDALKTQFP-VFDVC-----VANLPYQISSPFTFKLLA 161 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + ++FQKE GER+ A+ +YGRL++ +K T + ++S F P P Sbjct: 162 ---HRPVFRCGVIMFQKEFGERLVARVGEDNYGRLAINCQLFSKVTRVCNVSKGSFNPPP 218 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 +V S ++ F+ H +PI + + AF ++ KTL S Sbjct: 219 EVDSMIVKFVLHKDPINVDFPEFDGLLRVAFTRKNKTLHSSF 260 >gi|258645613|ref|ZP_05733082.1| dimethyladenosine transferase [Dialister invisus DSM 15470] gi|260402971|gb|EEW96518.1| dimethyladenosine transferase [Dialister invisus DSM 15470] Length = 286 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 13/272 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L + I K +GQNFL+ +I+ +IA ++ +G V+EIGAG G LTQ L G Sbjct: 12 VRYVLQRFGIRAKHRLGQNFLVRPDIVAEIAAAAELAEGAFVLEIGAGIGTLTQALAETG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V E D+ +L + N + II +D LK + ++ + ANLPY I Sbjct: 72 A-NVTTFEIDKSLENVLTHTLEAY-NNVHIIYEDVLKANLKEILG-DNNWHAAANLPYYI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +L I ++ + + QKEV +RI A+ S YG L++ + + D Sbjct: 129 TTPILLYLIQSELPISLF---VFMMQKEVADRILAKAGSKDYGALTLAVQFDCTVERVMD 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-- 245 I P F P P VTSTV+ P + ++ + FG+RRK ++K G Sbjct: 186 IPPAAFLPHPAVTSTVLKIRRRKEPAVKVADRKLFFRLVKMGFGQRRKVFTNAMKSGGIS 245 Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITN 274 G+ +L +AGI+ R E S+E++ + N Sbjct: 246 MELGKKILERAGIDGGRRGETFSMEEYAALAN 277 >gi|254468186|ref|ZP_05081592.1| dimethyladenosine transferase [beta proteobacterium KB13] gi|207086996|gb|EDZ64279.1| dimethyladenosine transferase [beta proteobacterium KB13] Length = 253 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 132/264 (50%), Gaps = 16/264 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL+D I+K I + + +EIG G G LT L + + +IE Sbjct: 2 IKAKKKFGQNFLIDNQIIKLIVDEIKFSETNKYLEIGPGMGALTSELQK-NTKNLDLIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKV--DFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D IL S++ + +I + D L +F + +N+ ++ NLPY I T ++F Sbjct: 61 DPDMIKIL---SAKINSTTQIFEGDVLGFSDNFFEGYNV-----VLGNLPYYIATEIIFR 112 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +I + + L + QKEV +R+ A+ S L+ L G+ +A FDI P F Sbjct: 113 FIPINNV----DILYFMVQKEVADRLVAKTGSKENSILTNLLGFNFRAEKCFDIKPESFD 168 Query: 197 PSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PSPKVTS+ I H + I K+I +E+F +RK L+ +LK + N I Sbjct: 169 PSPKVTSSFIKLTRHRDYINEIRYVDYKRIIKESFKFKRKNLKNNLKGVLNLNDFENLEI 228 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 RAE+LSIEDF +IT + N Sbjct: 229 LPTNRAEDLSIEDFIKITKYVITN 252 >gi|83816376|ref|YP_446299.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855] gi|119365670|sp|Q2S0I2|RSMA_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83757770|gb|ABC45883.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855] Length = 296 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 128/264 (48%), Gaps = 11/264 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PK+ +GQNFL D N+ +KI + + V+E+GAG G LT+ L R + +E D+ Sbjct: 36 PKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEIDE 94 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 + +L++ + ++ + D + D+ + P+R+I+N PY + + +LF + Sbjct: 95 RAVEVLRERVPE----ADVRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFALLG 150 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 L QKEV ERI A+ ++ YG LSVL + T+ F + P VF P P Sbjct: 151 QRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSPQP 207 Query: 200 KVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 VTS V I F P P + ++ + AF +RRK LR SL E + Sbjct: 208 DVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPNDWG 267 Query: 258 NLRAENLSIEDFCRITNILTDNQD 281 RAE L+ ++F + L + D Sbjct: 268 RKRAEALTPDEFATLARHLDAHAD 291 >gi|212696052|ref|ZP_03304180.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM 7454] gi|212676961|gb|EEB36568.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM 7454] Length = 255 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 9/237 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++K I Y K +GQNFL+D N + KI + S + G ++EIG G G ++Q + Sbjct: 8 KTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLS-EVSGENILEIGPGIGTISQEMAK 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-IRIIAN 124 +K++VIE D+ PILKD + N ++II D LK D +K N S ++++N Sbjct: 67 -TCKKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGEDFKVVSN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T ++ D P + +T++ QKEV +R+ A + S Y LSV + + Sbjct: 125 LPYYITTPIIEKLFEED-LP--CKDMTIMVQKEVADRMKADEKSKDYSSLSVFIKYYAEI 181 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 T F + VF P PK+ S V+ L L I + F KRRKT+ SL Sbjct: 182 TGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEKVNRNILFSIVRAGFNKRRKTILNSL 238 >gi|325971816|ref|YP_004248007.1| ribosomal RNA small subunit methyltransferase A [Spirochaeta sp. Buddy] gi|324027054|gb|ADY13813.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta sp. Buddy] Length = 292 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 19/285 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ +L ++ K GQNFL+ + +KI TV E+G G G +T +LL Sbjct: 12 AITALLKEEELSMSKKFGQNFLISRAVREKIVALLDVQQAQTVWEVGPGIGAITSLLLEK 71 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 G KV E D F IL + + +I DALK +P R+ NLPYN Sbjct: 72 GT-KVTAFEIDHGFCRILSEQAFADELSFRLIAGDALKTLPLTLGQEGAPDRLCGNLPYN 130 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +G+ ++ + +D PP + QKEV +R+ A +S + S+L + F Sbjct: 131 VGSVVIAKVLESDYRPPV---MVFTLQKEVVDRLCASPDSKDWSSFSMLAQMDYEVKPAF 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESL-KKITQEAFGKRRKTLRQSL--- 241 IS F+P PKVTS+ + F L P +P L L + ++ F +RRKT + +L Sbjct: 188 SISSGSFYPPPKVTSSTVVFT--LRPQSLVPSQLRHLFLLVIRDLFAQRRKTAKNNLLSG 245 Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + G E LL ++G++ + RAE L DF ++ L+ Q Sbjct: 246 KIAAQVGKEGVEELLRRSGVDASKRAEALVWSDFIALSESLSSYQ 290 >gi|167822806|ref|ZP_02454277.1| dimethyladenosine transferase [Burkholderia pseudomallei 9] gi|167892894|ref|ZP_02480296.1| dimethyladenosine transferase [Burkholderia pseudomallei 7894] gi|226196710|ref|ZP_03792290.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan 9] gi|254187683|ref|ZP_04894195.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur 52237] gi|254296205|ref|ZP_04963662.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e] gi|157805832|gb|EDO83002.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e] gi|157935363|gb|EDO91033.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur 52237] gi|225931241|gb|EEH27248.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan 9] Length = 275 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 135/276 (48%), Gaps = 27/276 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71 H +K GQNFL+D ++ I + G ++EIG G G LT L T G+ Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 + +E D+ ++ + + LE+ DAL DF +I+ P +RII NLP Sbjct: 66 PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R Sbjct: 120 YNISSPLLFHLMS---FAPIVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + D+ P F P PKV S ++ IPH + +P + L ++ AF +RRK LR + L Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNT---L 233 Query: 245 GGENLL---HQAGIETNLRAENLSIEDFCRITNILT 277 GG L G + RAE++ ++++ R+ + Sbjct: 234 GGYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269 >gi|255327324|ref|ZP_05368398.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296] gi|255295604|gb|EET74947.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296] Length = 290 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 136/276 (49%), Gaps = 20/276 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I P K +GQNF++D N +++I ++ TV+E+G G G+LT +L Sbjct: 12 IRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGILD-A 70 Query: 70 ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIAN 124 A+ ++ +E D QQ ++ + ++++ DALKV + + +P ++AN Sbjct: 71 AKDMVAVEIDPPLAQQLPHTIEKFRPEKGGDIDVVLMDALKVTELPR-----TPDALVAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + +P +L ++ Q EV +R++A S YG SV W + Sbjct: 126 LPYNVAVPVLLHLFA--QFPSIRHALVMV-QDEVADRLSATPGSKIYGVPSVKANWYAEV 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 I +VF+P+PK+ S ++ F P+ L I AF +RRKTLR +L Sbjct: 183 YKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAALSS 242 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E +L AGI R E L I F RI Sbjct: 243 WAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAE 278 >gi|254181754|ref|ZP_04888351.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655] gi|184212292|gb|EDU09335.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655] Length = 275 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 25/275 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+D ++ I + G ++EIG G G LT + L Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLAAPGSP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ ++ + + LE+ DAL DF +I+ P +RII NLPY Sbjct: 67 LHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + Sbjct: 121 NISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKL 177 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P PKV S ++ IPH + +P + L ++ AF +RRK LR + LG Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNT---LG 234 Query: 246 GENLL---HQAGIETNLRAENLSIEDFCRITNILT 277 G L G + RAE++ ++++ R+ + Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269 >gi|325278903|ref|YP_004251445.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter splanchnicus DSM 20712] gi|324310712|gb|ADY31265.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter splanchnicus DSM 20712] Length = 281 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 129/268 (48%), Gaps = 22/268 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQ+FL D NI +KI +S L +T ++EIG G G LT+ L A V I+ D Sbjct: 27 KKSLGQHFLRDQNIARKITDS---LLPVTRDILEIGPGMGVLTRHLFANPAFSVRAIDID 83 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 Q+ L ++ +R I+ D LK D +++ P +I NLPYNI +++ F I Sbjct: 84 QESIDYLHQELPEYQDR--ILYGDFLKTDIRQYY--QEPFSVIGNLPYNISSQIFFRIIE 139 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEV ERI A S YG LSV +F + VF P P Sbjct: 140 NRH---LVRQVVCMIQKEVAERIAASPGSKTYGILSVFLQAFYHIEYLFTVGEKVFDPPP 196 Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET- 257 KV S VI + C E L + + F +RRKTLR S++ + G ++ Sbjct: 197 KVKSAVIRLTRNERVELGCEEKLFFNVVKTGFNQRRKTLRNSIRG------IIPPGFDSP 250 Query: 258 --NLRAENLSIEDFCRITNILTDNQDIA 283 NLR E L I DF ++ + N++I Sbjct: 251 YLNLRPEQLGITDFLQLCQDIEKNRNIG 278 >gi|53718304|ref|YP_107290.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243] gi|53725018|ref|YP_102046.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344] gi|67641454|ref|ZP_00440232.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4] gi|76809493|ref|YP_332287.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b] gi|121600269|ref|YP_994030.1| dimethyladenosine transferase [Burkholderia mallei SAVP1] gi|124384045|ref|YP_001028306.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229] gi|126450922|ref|YP_001081950.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247] gi|134279776|ref|ZP_01766488.1| dimethyladenosine transferase [Burkholderia pseudomallei 305] gi|167002705|ref|ZP_02268495.1| dimethyladenosine transferase [Burkholderia mallei PRL-20] gi|167718167|ref|ZP_02401403.1| dimethyladenosine transferase [Burkholderia pseudomallei DM98] gi|167737198|ref|ZP_02409972.1| dimethyladenosine transferase [Burkholderia pseudomallei 14] gi|167909608|ref|ZP_02496699.1| dimethyladenosine transferase [Burkholderia pseudomallei 112] gi|167917623|ref|ZP_02504714.1| dimethyladenosine transferase [Burkholderia pseudomallei BCC215] gi|217420008|ref|ZP_03451514.1| dimethyladenosine transferase [Burkholderia pseudomallei 576] gi|237810897|ref|YP_002895348.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346] gi|254176730|ref|ZP_04883387.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399] gi|254203732|ref|ZP_04910092.1| dimethyladenosine transferase [Burkholderia mallei FMH] gi|254208707|ref|ZP_04915055.1| dimethyladenosine transferase [Burkholderia mallei JHU] gi|254260055|ref|ZP_04951109.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a] gi|254360240|ref|ZP_04976510.1| dimethyladenosine transferase [Burkholderia mallei 2002721280] gi|62900499|sp|Q62MM2|RSMA_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900502|sp|Q63X76|RSMA_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122064287|sp|Q3JVW6|RSMA_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221652|sp|A3MNW4|RSMA_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221653|sp|A2S8N7|RSMA_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221654|sp|A1V727|RSMA_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52208718|emb|CAH34654.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243] gi|52428441|gb|AAU49034.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344] gi|76578946|gb|ABA48421.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b] gi|121229079|gb|ABM51597.1| dimethyladenosine transferase [Burkholderia mallei SAVP1] gi|124292065|gb|ABN01334.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229] gi|126243792|gb|ABO06885.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247] gi|134248976|gb|EBA49058.1| dimethyladenosine transferase [Burkholderia pseudomallei 305] gi|147745244|gb|EDK52324.1| dimethyladenosine transferase [Burkholderia mallei FMH] gi|147750583|gb|EDK57652.1| dimethyladenosine transferase [Burkholderia mallei JHU] gi|148029480|gb|EDK87385.1| dimethyladenosine transferase [Burkholderia mallei 2002721280] gi|160697771|gb|EDP87741.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399] gi|217397312|gb|EEC37328.1| dimethyladenosine transferase [Burkholderia pseudomallei 576] gi|237505952|gb|ACQ98270.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346] gi|238522393|gb|EEP85837.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4] gi|243061644|gb|EES43830.1| dimethyladenosine transferase [Burkholderia mallei PRL-20] gi|254218744|gb|EET08128.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a] Length = 275 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 25/275 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71 H +K GQNFL+D ++ I + G ++EIG G G LT L T G+ Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 + +E D+ ++ + + LE+ DAL DF +I+ P +RII NLP Sbjct: 66 PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R Sbjct: 120 YNISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + D+ P F P PKV S ++ IPH + +P + L ++ AF +RRK LR +L Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234 Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277 G +L+ G + RAE++ ++++ R+ + Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269 >gi|294508235|ref|YP_003572293.1| Dimethyladenosine transferase [Salinibacter ruber M8] gi|294344563|emb|CBH25341.1| Dimethyladenosine transferase [Salinibacter ruber M8] Length = 269 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 128/264 (48%), Gaps = 11/264 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PK+ +GQNFL D N+ +KI + + V+E+GAG G LT+ L R + +E D+ Sbjct: 9 PKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEIDE 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139 + +L++ + ++ + D + D+ + P+R+I+N PY + + +LF + Sbjct: 68 RAVEVLRERVPE----ADVRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFALLG 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 L QKEV ERI A+ ++ YG LSVL + T+ F + P VF P P Sbjct: 124 QRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSPQP 180 Query: 200 KVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 VTS V I F P P + ++ + AF +RRK LR SL E + Sbjct: 181 DVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPNDWG 240 Query: 258 NLRAENLSIEDFCRITNILTDNQD 281 RAE L+ ++F + L + D Sbjct: 241 RKRAEALTPDEFATLARHLDAHAD 264 >gi|215426288|ref|ZP_03424207.1| dimethyladenosine transferase [Mycobacterium tuberculosis T92] Length = 377 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 21/266 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL GA V +E D Sbjct: 30 PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 88 Query: 81 QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L+ ++H +RL ++ D L + E ++P ++ANLPYN+ L + Sbjct: 89 LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 146 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P +T++ Q EV ER+ A+ S YG SV + + +SP VF+ Sbjct: 147 LLVEF---PSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 203 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE---- 247 P P+V S ++ + +P P ++ ++ E AF +RRKT R + + G Sbjct: 204 PIPRVYSGLVRIDRYETSPWP-TDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSES 262 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRI 272 N L A I+ R E LSI+DF R+ Sbjct: 263 ANRLLAASIDPARRGETLSIDDFVRL 288 >gi|159906054|ref|YP_001549716.1| dimethyladenosine transferase [Methanococcus maripaludis C6] gi|226732596|sp|A9AAW1|RSMA_METM6 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|159887547|gb|ABX02484.1| dimethyladenosine transferase [Methanococcus maripaludis C6] Length = 263 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 14/221 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D N +KK + D V+E+G G G LT+ L L A+KV VIE D++ Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITDKDIVLEVGLGEGALTKELAKL-AKKVYVIELDERL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+S+ N +EII DALKVD + FN +I+ANLPY I + + F ++ D Sbjct: 64 KPFADEITSEFEN-VEIIWSDALKVDLKNLGFN-----KIVANLPYQISSPITFKFLEED 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E+ L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 S ++ E KK+ + F R +T++++L Sbjct: 173 NSAIVKLTKRKPKYSVKDEKFFKKVLKALFQHRNRTIKRAL 213 >gi|206895498|ref|YP_002247582.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM 5265] gi|206738115|gb|ACI17193.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM 5265] Length = 279 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 142/272 (52%), Gaps = 26/272 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L + I PKK +GQ+FL+ ++ KI ++G D +EIGAG G LT + L + Sbjct: 20 LLKQFSISPKKTLGQSFLICDHVADKIVAAAGHDD--VAVEIGAGTGMLT-VRLASHYKN 76 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGT 131 VI IE DQ+ + I++ PN + + +D F K+ + I ++ NLPY I T Sbjct: 77 VIAIEIDQRLKALHNMITADFPNVVFVYED------FLKWIPRPTEIPTVVGNLPYYITT 130 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +L + P +++ + QKE+G R+ A S YG LSV TK M+F ++ Sbjct: 131 PIL-EKVFFQMKP---KTMVFMVQKELGARMVANPGSKTYGALSVFVQSFTKPEMLFHVT 186 Query: 192 PHVFFPSPKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + F+P+P+V S V+ + ++P E L+ + + AF +RRK LR LK+ Sbjct: 187 KNCFYPAPEVDSVVVKLEGIYGYEEVVDP-----EVLEHVVKRAFQQRRKMLRSGLKKEP 241 Query: 246 GENLL-HQAGIETNLRAENLSIEDFCRITNIL 276 +AGI+T+LR E +++E + R ++ Sbjct: 242 LLLKKAEEAGIDTSLRPEQITVEQYVRWATLV 273 >gi|206559290|ref|YP_002230051.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315] gi|226729763|sp|B4EBE8|RSMA_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|198035328|emb|CAR51203.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315] Length = 275 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 134/280 (47%), Gaps = 35/280 (12%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L L Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPESP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ ++ + + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 67 LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 NI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 121 NISSPLLFHLMT------FADAVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTL 237 M D+ P F P PKV S ++ IP+ ++P+ L +I AF +RRK L Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEIVSAAFSQRRKML 229 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R +L G + RAE++S+ ++ + L Sbjct: 230 RNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|126439976|ref|YP_001057747.1| dimethyladenosine transferase [Burkholderia pseudomallei 668] gi|126452897|ref|YP_001064991.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a] gi|167844380|ref|ZP_02469888.1| dimethyladenosine transferase [Burkholderia pseudomallei B7210] gi|242317237|ref|ZP_04816253.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b] gi|254196635|ref|ZP_04903059.1| dimethyladenosine transferase [Burkholderia pseudomallei S13] gi|166221655|sp|A3NRM0|RSMA_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221656|sp|A3N5X6|RSMA_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126219469|gb|ABN82975.1| dimethyladenosine transferase [Burkholderia pseudomallei 668] gi|126226539|gb|ABN90079.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a] gi|169653378|gb|EDS86071.1| dimethyladenosine transferase [Burkholderia pseudomallei S13] gi|242140476|gb|EES26878.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b] Length = 275 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 25/275 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71 H +K GQNFL+D ++ I + G ++EIG G G LT L T G+ Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 + +E D+ ++ + + LE+ DAL DF +I+ P +RII NLP Sbjct: 66 PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGGEPSLRIIGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R Sbjct: 120 YNISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + D+ P F P PKV S ++ IPH + +P + L ++ AF +RRK LR +L Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234 Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277 G +L+ G + RAE++ ++++ R+ + Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269 >gi|313835387|gb|EFS73101.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA2] Length = 298 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 26/286 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66 S++ I + P K GQNF+ D N +++I + GS D VIE+G G G+LT LL Sbjct: 11 SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSED--RVIEVGPGLGSLTLGLL 68 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122 GA +V+ +E D+ L D I+ + P RL+++ DAL V K + P ++ Sbjct: 69 EPGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTALV 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 125 ANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWYA 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCLES-LKKITQEAFGKRRKT 236 +AT + ++ P VF+P P V S ++ P P S + ++ AF RRK Sbjct: 182 EATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRKM 241 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 242 LRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287 >gi|257388711|ref|YP_003178484.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286] gi|257171018|gb|ACV48777.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286] Length = 290 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 26/224 (11%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D +L +I + +D V+E+GAGPG LT LL + A +V IE+D F L Sbjct: 34 QHFLIDDRVLDRIPGYADQMDRSHVLEVGAGPGALTDRLLAV-ADRVTAIERDPDFAAHL 92 Query: 87 KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 ++ + +RL I++ DAL VD +F ++NLPY + + F + Sbjct: 93 REEFADAIDADRLTIVEGDALDVDLPEFSAS------VSNLPYGASSEIAFRLL------ 140 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 P + L L+FQ+E ER+ A S YGRLSV G ++ + P F P P+V S Sbjct: 141 PRGKPLVLMFQQEFAERMAADPGSDDYGRLSVTAGHYADVEIVETVPPTAFDPQPRVDSA 200 Query: 205 VIHFIPHLNP---IP---CCLESLKKITQEAFGKRRKTLRQSLK 242 ++ P P +P ++ LK + F +RRKT+R +++ Sbjct: 201 IVRLRPR-EPDYSVPDDDFFMDFLKGV----FTQRRKTMRNAVR 239 >gi|288869605|ref|ZP_05975193.2| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374] gi|288860560|gb|EFC92858.1| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374] Length = 306 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 13/207 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + K IL+ Y I K +GQN+L+D N +I + V+EIG G G LT + L Sbjct: 14 SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLT-IEL 72 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +KVI IE+D IL++ + ++ + +++I DDAL V+F KF +II+NL Sbjct: 73 AKRVKKVIAIEQDSNICQILENRLKKENIDNVDLINDDALNVEFPKFD------KIISNL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F +++ D ++ L++QKE R+ + S Y RLS + ++ Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL 212 ++ +S F P PKV STV+ P L Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKL 208 >gi|303244670|ref|ZP_07331002.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1] gi|302484978|gb|EFL47910.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1] Length = 279 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 33/274 (12%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D NI+KK ++ V+EIG G G LT+ L A+KV VIE D + Sbjct: 12 KKLGQCFLKDKNIVKKAVNAADINKNDIVLEIGLGKGILTKELAK-NAKKVYVIELDMRL 70 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +++ +++PN +EII +DALKV+ ++ FN +I+ANLPY I + + F ++ D Sbjct: 71 EPFAEEVIAEYPN-VEIIWNDALKVNLDELNFN-----KIVANLPYQISSPITFKFLKKD 124 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L++Q E +R+ A++ + YGRLSV + + +SP F P PKV Sbjct: 125 -----FDVAVLMYQYEFAKRMIAKEGTKEYGRLSVSVQYYANVQFVCKVSPSAFSPKPKV 179 Query: 202 TSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRLGGE---------- 247 S ++ I P E + + + F + KT +++L E Sbjct: 180 DSAIVK-ITKKEPNELYYLEDKEFFENVVRALFQHKNKTAKKALINSCHEMGLNRDEIKN 238 Query: 248 -----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 N L+ + + N R L+IE ++N+L Sbjct: 239 MIDTLNNLNLSKFDLNERVFTLNIEKIVELSNML 272 >gi|299116859|emb|CBN74971.1| chloroplast dimethyladenosine synthase (Partial) [Ectocarpus siliculosus] Length = 433 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 141/273 (51%), Gaps = 27/273 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ +GQN+L D N + KI G S G V+E+G G G LTQ+L ++ ++ Sbjct: 136 PKQSLGQNYLSDQNYVMKICNHFGDTSEGGRRVLELGPGTGALTQVLHERFP-DMLAVDI 194 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137 DQ+ +L S P+ L + D L++D+ K + P+ +I NLPY+I +++LF Sbjct: 195 DQRAIELL---GSNMPS-LNAVMSDVLQLDYTKLAELRGGPLSVIGNLPYHITSQILFTL 250 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 D + ++ + Q EV +RI A+ ++ YG LSV+ + ++F I P VF+P Sbjct: 251 C--DHYQSVRRAVVTM-QLEVAQRIVAKSSTKQYGILSVVFQLYARPQVLFQIPPTVFYP 307 Query: 198 SPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250 P VTS +I P +N CL+S + AF +RRK LRQSLK L G+ L Sbjct: 308 QPSVTSALISLDFTGKGPGVN--QACLKS---VLSSAFQQRRKMLRQSLKPLLRAGQKLP 362 Query: 251 HQAGIETNLRAENLSIEDFCRITN-ILTDNQDI 282 + R E L ++F +T + D+ ++ Sbjct: 363 EEFATR---RPEQLEPQEFVELTRAVFGDSAEL 392 >gi|254774035|ref|ZP_05215551.1| dimethyladenosine transferase [Mycobacterium avium subsp. avium ATCC 25291] Length = 318 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 19/283 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL G Sbjct: 22 IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALLDRG 81 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L ++H + RL ++ D L + ++ P ++ANL Sbjct: 82 A-HVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL--AEPPTAVVANL 138 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + + Sbjct: 139 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGRVR 195 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN---PI-PCCLESLKKITQEAFGKRRKTLRQSL 241 +SP VF+P P+V S ++ + PI P + ++ AFG+RRKT R + Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPIDPAFRRQVFELVDIAFGQRRKTCRNAF 255 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G + L A I+ R E LSI+DF R+ D Sbjct: 256 VDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298 >gi|292659595|pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. gi|292659596|pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And Methanocaldococcus Jannaschi Dim1 gi|292659597|pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And Methanocaldococcus Jannaschi Dim1 gi|292659598|pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Methionine And Methanocaldococcus Jannaschi Dim1 Length = 295 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 14/223 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ Sbjct: 24 PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 82 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139 P + + N +EII DALKVD K FN +++ANLPY I + + F I Sbjct: 83 SLEPYANKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIK 136 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ L++Q E +R+ A + YGRLSV R ++ + P F+P P Sbjct: 137 RG-----FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKP 191 Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 KV S ++ P+ E+ + F R K++R++L Sbjct: 192 KVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 234 >gi|330944934|gb|EGH46747.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 189 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 5/180 (2%) Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160 Q DALK DF +R++ NLPYNI T L+F+ + + + + QKEV E Sbjct: 8 QGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFMLQKEVVE 64 Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL 219 R+ A +GRLS++ + + +F++ P F P PKV S ++ +P+ P P Sbjct: 65 RMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPYETLPHPAKD 124 Query: 220 ES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L++I +EAF +RRKTLR +LK L + + +G++ +LR E L + F R+ + L++ Sbjct: 125 HRVLERIVREAFNQRRKTLRNTLKLLLTSDEITASGVDGSLRPEQLDLAAFVRLADTLSE 184 >gi|255039492|ref|YP_003090113.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053] gi|254952248|gb|ACT96948.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053] Length = 266 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 132/266 (49%), Gaps = 15/266 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 K+ KK++GQ+FL DLNI ++I + SG V+EIG G G LTQ LL VI Sbjct: 10 KVRAKKHLGQHFLKDLNIAQRIVDGLSGHGGYDRVLEIGPGMGVLTQFLLPKTDFSTYVI 69 Query: 77 EKDQQFFPILKDISSQHPNRL-EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 E D + L+ +P+ II D LK + + F +I N PYNI +++ F Sbjct: 70 EIDTESVAYLE---KHYPDLAPRIIAGDFLKFNAGEHF--PGKFAVIGNFPYNISSQIFF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + + QKEV +RI + + YG LSVL + + P F Sbjct: 125 RALEIRDRIP---EIVCMLQKEVAQRIASPPGNKDYGILSVLLQAFYDIDYLVSVPPGAF 181 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S VI + ++ + C + ++ + AF +RRKTLR +LK + GE H Sbjct: 182 DPPPKVQSGVIRLRRNGVSALECDEKLFFRVVKTAFNQRRKTLRNALKPV-GEIPYHPL- 239 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 N RAE LS++DF +T + + Q Sbjct: 240 --LNKRAEQLSVQDFVTLTLLAQNAQ 263 >gi|111022636|ref|YP_705608.1| dimethyladenosine transferase [Rhodococcus jostii RHA1] gi|118600893|sp|Q0S4T6|RSMA_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110822166|gb|ABG97450.1| probable rRNA dimethyladenosine transferase [Rhodococcus jostii RHA1] Length = 296 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 21/278 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G TV+E+G G G+LT LL + Sbjct: 22 VRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALLDV- 80 Query: 70 ARKVIVIEKDQQF---FPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 KVI +E D P+ + D + + +RL ++ DA++V + P ++ANL Sbjct: 81 VDKVIAVEIDPNLAARLPVTVADRAPELADRLTVVGADAMRVKPSEIPG--EPTALVANL 138 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + S P + ++ Q EV +R+ A S YG SV + Sbjct: 139 PYNVAVPVLLHLFSEL---PSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFGAVR 195 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKTLRQS 240 + VF+P PKV S ++ + P P ++ + + AF +RRKTLR + Sbjct: 196 RAGAVGRAVFWPVPKVESGLVRIDRYAEP-PWPVDDAHRRRVFAVIDAAFAQRRKTLRAA 254 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L G E L +AGI + R E L F R+ Sbjct: 255 LGGWAGSPAEAERRLLEAGIAPSARGETLDAAAFVRLA 292 >gi|86160103|ref|YP_466888.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C] gi|122064278|sp|Q2IFT9|RSMA_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85776614|gb|ABC83451.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 284 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 35/296 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M ++ S + +L Y + KK GQNFL + +L IA + G V+E+GAG G+LT Sbjct: 1 MTDRYPSPRALLDRYDLRAKKSWGQNFLGEEAVLDDIARLAAPRAGDPVLELGAGLGHLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---- 118 LL GAR V+ +E+D+ +L+ + +R+ +++ DA ++D Sbjct: 61 ARLLARGAR-VVAVERDRDMARVLR---GELGDRITLLEADAARLDHAALAARFGAPAAA 116 Query: 119 -----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + ++ NLPY++ + +LF+ + L Q+EV ER+ A S +G Sbjct: 117 GEGARLAVVGNLPYHLTSPILFSILDQVA---HVSRAVFLLQREVAERLAAPPASRDWGL 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPI--PCCLESLKKITQEA 229 LSVL + ++ + P F+P PKV S V+ F P + + P +++ + Sbjct: 174 LSVLLQREAEVSVERIVPPGAFWPPPKVESAVLCALFRPPADAVGDPA---RFRRLVKAG 230 Query: 230 FGKRRKTLRQSLKRLGGENLLHQA---------GIETNLRAENLSIEDFCRITNIL 276 FG RRKTLR + LG L A G++ R E L++ ++ + L Sbjct: 231 FGLRRKTLRNA---LGSAKLAEPARLEAAFAAAGVDPGRRGETLTLAEWAALDRAL 283 >gi|156084308|ref|XP_001609637.1| dimethyladenosine transferase protein [Babesia bovis T2Bo] gi|154796889|gb|EDO06069.1| dimethyladenosine transferase protein, putative [Babesia bovis] Length = 366 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 15/253 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ TV+EIG G GNLT L+ L ARKVI I+ D + Sbjct: 51 KKFGQHMLKNPGILDKIILAAEIRSSDTVLEIGPGTGNLTIRLVPL-ARKVIAIDIDNRM 109 Query: 83 F-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + K S + L++I+ DAL++ + KF ++ + ANLPY I + +F +S Sbjct: 110 VGEVKKRCLSMGYSNLDVIEGDALRITYPKF-DVCT-----ANLPYQISSPFVFKLLSHR 163 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQKE ER+ A N YGRL++ T T + ++P F P PKV Sbjct: 164 ---PLFRCAVLMFQKEFAERLLASTNEAKYGRLAINTRLFCTVTRVCKVAPGSFNPPPKV 220 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---HQAGIETN 258 S ++ +P P+ + + F ++R+TLR K+ ++L ++ N Sbjct: 221 DSMIVKIVPREQPLVIDFVEWDGMIRVCFTRKRRTLRSLFKKQAILSVLEGNYKNWCTIN 280 Query: 259 LRA-ENLSIEDFC 270 +A E + +D+C Sbjct: 281 GKAPEPMPFKDYC 293 >gi|189485764|ref|YP_001956705.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287723|dbj|BAG14244.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 265 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 135/259 (52%), Gaps = 25/259 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 G+NFL D NI I +++ V+EIG G G LT+ ++ L + + +EKD+ Sbjct: 12 GKNFLTDNNIANNIIKAANLEKYDEVLEIGPGKGILTK-IIQLQVKYLTAVEKDKILSQQ 70 Query: 86 LKDISSQHPNR-LEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTW 143 L S H R ++II D LK +NI ++ ++II+NLPYN+GT ++ + Sbjct: 71 LNHYFSFHGARNIKIINADFLK------YNIPNTELKIISNLPYNVGTAIIQKILPLK-- 122 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 W + + QKEV +R+ AQ S YG +S+ T + T ++FD+S F P PK+ S Sbjct: 123 --HWTTAVFMLQKEVTQRLVAQPGSKAYGYISIFTSYYTDCKILFDVSSRCFSPPPKIIS 180 Query: 204 TVIHFIPHLN-PI-PCCLESLKKITQEAFGKRRKTLR------QSLKRLGGENLLHQAGI 255 +VI + P P + +K AF RRKT+ ++L++ ++L+ + Sbjct: 181 SVIKLTNKASEPTDPVFFDFVK----HAFKTRRKTILNCLSSFKNLEKSKAAHILNACAL 236 Query: 256 ETNLRAENLSIEDFCRITN 274 + LR + LSI DF R+ + Sbjct: 237 DPFLRPDKLSIPDFLRLID 255 >gi|209877254|ref|XP_002140069.1| dimethyladenosine transferase protein [Cryptosporidium muris RN66] gi|209555675|gb|EEA05720.1| dimethyladenosine transferase protein, putative [Cryptosporidium muris RN66] Length = 361 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 113/221 (51%), Gaps = 11/221 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI E+S V+EIG G GNLT LL L ARKVI + D + Sbjct: 54 KKKGQHLLKNPGILDKIVEASDIKPTDIVLEIGPGTGNLTMRLLPL-ARKVIAFDIDPRM 112 Query: 83 FPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K S + N LE+ + DAL+ D KF +I + ANLPY I + +F +S Sbjct: 113 VAEVKKRSMNAGYNNLEVKEGDALRSDLGKF-DICT-----ANLPYQISSPFVFRILSHK 166 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQ+E R+ A+ HY RL++ T K + + P F P PKV Sbjct: 167 ---PTFRCAVLMFQEEFALRLLAEPGDKHYCRLTLNTKLLCKVIRVCKVLPGSFNPPPKV 223 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 S V+ FIP PIP + + F +++KT+R + K Sbjct: 224 NSMVVKFIPKTCPIPVNFREWDGLMRICFLRKKKTIRANFK 264 >gi|57234784|ref|YP_181149.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195] gi|119365020|sp|Q3Z9F0|RSMA_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|57225232|gb|AAW40289.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195] Length = 291 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 143/277 (51%), Gaps = 15/277 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ L+ A Sbjct: 20 KEMMEGYTLRARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN II D LK + + P +++ANLPY I Sbjct: 79 GQVIAVELDDKLVTALTEKFKAYPN-FRIIHSDILKTSPAEILGQNIPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A+ P E + ++ QKEV + + AQ G L++ + +++ + Sbjct: 138 SAVLRQFLEAEAKP---ELMVVMVQKEVAKNMVAQTG--DMGLLTLSVRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248 F+P P+V S ++ IP + E+ K+ + FG RRKTL +L + G + Sbjct: 193 PGGAFYPPPEVDSAIVKVAIPQAAIMQGVSEADFFKLARAGFGTRRKTLLNALAQGLGVS 252 Query: 249 ------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 LL++AGIE RAE LS+E++ + + T+N Sbjct: 253 KQSVLALLNRAGIEPARRAETLSMEEWKMLCLVYTEN 289 >gi|224437068|ref|ZP_03658049.1| dimethyladenosine transferase [Helicobacter cinaedi CCUG 18818] gi|313143541|ref|ZP_07805734.1| dimethyladenosine transferase dimethyltransferase [Helicobacter cinaedi CCUG 18818] gi|313128572|gb|EFR46189.1| dimethyladenosine transferase dimethyltransferase [Helicobacter cinaedi CCUG 18818] Length = 296 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 136/281 (48%), Gaps = 28/281 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L+H+ KK +GQNFL D + + KI +S +L I +EIG G G+LTQ LL + + Sbjct: 4 LAHH---AKKRLGQNFLQDSHYIHKIVQSIPTLP-IQCVEIGVGLGDLTQELLKI--ESL 57 Query: 74 IVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I E D +L + S+ RL II +D L ++ + + ++++NLPY I T Sbjct: 58 IAYEVDLDLCSLLNEKFSKQIESGRLHIIYEDVLNRPSQQAWLHTQEYKVVSNLPYYIAT 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + F ++ QKEV ++ A+ + LSVL A ++FD+ Sbjct: 118 HIIVRLL----HDRFCRGFIVMTQKEVAQKFCAKSGEKEFCALSVLVESLGTAELLFDVP 173 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFGKRRKTLRQSLK-- 242 F P PKVTS+V F+ H NP+ C LE+ K+ AF RKTL ++L Sbjct: 174 KEAFSPIPKVTSSV--FVIHKNPLQGNADFSLCDLEAFLKL---AFCSPRKTLAKNLSLS 228 Query: 243 --RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + E L A ++ N RA + E F I N L D Sbjct: 229 FDKKSVELALESANVKPNARAHEVKTESFHHILNTLKKGND 269 >gi|294461690|gb|ADE76404.1| unknown [Picea sitchensis] Length = 390 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +LK I + +G + TV+EIG G GNLT LL AR+VI +E D + Sbjct: 73 KSRGQHILTNPRVLKSIVDKAGVRETDTVLEIGPGTGNLTLELLQ-AARRVIAVEIDPRM 131 Query: 83 FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + ++ RLE+++ D L+ D F +I +AN+PY I + L+F +S Sbjct: 132 IEAVHKRVQGTEMAQRLELVRGDILRTDLPSF-DI-----CVANIPYQISSPLIFKLLS- 184 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 T P F + TL+ QKE G R+ A+ + RL+V A ++ D+S F P PK Sbjct: 185 -TMPKFRNA-TLMLQKEFGRRLVAKPGDSLFNRLAVNVDLLASAKLLMDVSKRDFTPCPK 242 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+V+ P P P L + T F ++ KTL Sbjct: 243 VDSSVVRIEPRAWPPPVDLSEWNRFTLMCFTRKNKTL 279 >gi|289193112|ref|YP_003459053.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22] gi|288939562|gb|ADC70317.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22] Length = 274 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ FL+D N +KK ES+ V+EIG G G LT+ L A+KV VIE D+ Sbjct: 4 PKKKLGQCFLIDKNFVKKAVESAEITKDDIVLEIGLGKGILTEELAK-NAKKVYVIEIDK 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139 P + + N +EII DALKV+ ++ FN +++ANLPY I + + F I Sbjct: 63 SLEPYANKLKENY-NNIEIIWGDALKVNLDELDFN-----KVVANLPYQISSPITFKLIK 116 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ L++Q E R+ A++ + YGRLSV R ++ + P F P P Sbjct: 117 KG-----FDLAVLMYQYEFARRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPTAFSPRP 171 Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 KV S ++ P+ N E + F R K++R++L Sbjct: 172 KVYSAIVKIKPNKNKYHIENEDFFDDFLRTIFQHRNKSVRKAL 214 >gi|294899921|ref|XP_002776810.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] gi|239884011|gb|EER08626.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] Length = 354 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 13/222 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + IL KI E+S TV+EIG G GNLT LL L A+KV+ +E D + Sbjct: 50 QKKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPR 108 Query: 82 FFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +K +Q R L++I+ DALK F F++ +ANLPY I + F ++ Sbjct: 109 MAAEVKK-RAQTAGRMNLKVIEGDALKTAFP-VFDVC-----VANLPYQISSPFTFKLLA 161 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + ++FQKE GER+ A+ +YGRL++ +K T + ++S F P P Sbjct: 162 ---HRPVFRCGVIMFQKEFGERLVARVGEENYGRLAINCQLFSKVTRVCNVSKGSFNPPP 218 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 +V S ++ F+ H +PI + + AF ++ KTL S Sbjct: 219 EVDSMIVKFVLHKDPINVDFPEFDGLLRIAFTRKNKTLHSSF 260 >gi|298207337|ref|YP_003715516.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559] gi|83849973|gb|EAP87841.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559] Length = 269 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 130/263 (49%), Gaps = 15/263 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ+FL D +KI + V+EIG G G LT+ LL + ++ DQ+ Sbjct: 8 KKHLGQHFLNDEETAEKIGNTLSFKGYDHVLEIGPGTGVLTKYLLEKDV-ALTAMDLDQE 66 Query: 82 FFPILKD-ISSQHPNRL-----EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 LKD S +H +++ ++ D LK D + F I N PYNI T+++F Sbjct: 67 SVDYLKDHFSIEHASKISSKSFRVLYADFLKYDLSQLFG-DEQFAITGNFPYNISTQIVF 125 Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + D P F T +FQKEV +RI ++ S YG LSVL A +F + P V Sbjct: 126 KTLELRDQIPEF----TGMFQKEVAKRICEKEGSKAYGILSVLAQAFYNAEYLFTVPPTV 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S V+ + E L ++ ++AF +RRKTLR SLK + L Sbjct: 182 FNPPPKVESGVLRLTRKEDYSLNVDEKLFFRVVKQAFQQRRKTLRNSLKTFQLSDELRVN 241 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 I N R E LS+ F +T ++ Sbjct: 242 DI-FNKRPEQLSVAAFLELTALI 263 >gi|257057212|ref|YP_003135044.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017] gi|256587084|gb|ACU98217.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017] Length = 284 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 141/280 (50%), Gaps = 16/280 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K +GQNF+ D N +++I +G G V+E+G G G+LT LL Sbjct: 10 AAEIRRLAAALGLRPTKKLGQNFVHDANTVRRIVGLAGVEPGEAVVEVGPGLGSLTLGLL 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L D ++H RL +I+ DAL++ ++ P ++ Sbjct: 70 HAGA-HVAAVEIDPVLAARLPDTVAEHAPDTVERLTVIERDALRLRADEL--PIEPTALV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + ++ P +L ++ Q EV +R++A+ S YG SV W Sbjct: 127 ANLPYNVAVPVVLHLLA--ELPSLRRAL-VMVQTEVADRMSARPGSRVYGVPSVKLAWYG 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 +A + + VF+P P V S+++ F P +++ + AF +RRKTLR +L Sbjct: 184 RARKVASVPRSVFWPVPNVDSSLVAF-ERATPPDADRDTVFALVDAAFAQRRKTLRAALA 242 Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G LL +AG++ R E L++E F I T Sbjct: 243 PWAGSADRAAELLSRAGVDPATRGERLTVEQFAAIARAAT 282 >gi|37521560|ref|NP_924937.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC 7421] gi|62900565|sp|Q7NJ41|RSMA_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|35212558|dbj|BAC89932.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC 7421] Length = 272 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 22/267 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ++L D +L +I ++G G V+EIG G G+LT LL V+ +E D++ Sbjct: 5 KRFGQHWLNDGAVLDRIVAAAGLACGDRVLEIGPGLGSLTARLLR--QVPVVAVEIDRRA 62 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ R +++ D L+ + N+ ++AN+PYNI +L + Sbjct: 63 VAQLQRQFGGD-KRFVLVEGDILREALPEPANV-----VVANIPYNISGPILAKLTGSLA 116 Query: 143 WP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + ++ LL QKE+G+RI A S YG LSV + + ++F++ H F P PKV Sbjct: 117 QPIRRFRTIVLLVQKELGQRIAAPPGSRTYGALSVRLQYLAECELLFEVPSHCFTPPPKV 176 Query: 202 TSTVIHFIPHLNPIPCCLES-----LKKITQEAFGKRRKTLRQSLKR-LGGENLLHQAG- 254 S VI L P P L++ L + AF RRK L+ LK + E LL Sbjct: 177 DSAVI----RLTPRPFALQADDPAHLDALVTRAFATRRKMLKNCLKGWVETEKLLAAFAS 232 Query: 255 --IETNLRAENLSIEDFCRITNILTDN 279 I + RAE+LS+E F +++N L ++ Sbjct: 233 LDISPDARAEDLSVERFVQLSNRLAES 259 >gi|270014921|gb|EFA11369.1| hypothetical protein TcasGA2_TC011527 [Tribolium castaneum] Length = 379 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 35/282 (12%) Query: 27 QNFLLDLNILKKIAESSGSLDGIT----------VIEIGAGPGNLTQMLLTLGARKVIVI 76 +NFL D I + ES+ D I V E+G GPG++T+ ++ +K+IV+ Sbjct: 69 ENFLDDFEIPTTVTESAKITDKIVKAAGNIRNHYVCEVGPGPGSITRSIIRKCPKKLIVV 128 Query: 77 EKDQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANL 125 EKD +F PIL+ + +SQ ++ I D +FE+ F + PI +I NL Sbjct: 129 EKDPRFVPILELLQEASQSHVKMGIKIQDIRDFNFEEGFAGAPAREWTDYPPPIHLIGNL 188 Query: 126 PYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 P+++ T L+ W+ A W ++TL FQKEV ERI A RLSV+ + Sbjct: 189 PFSVSTNLIIRWLHAISEQRSAWSFGRSTMTLTFQKEVAERIVAPVTHEQRCRLSVMCQF 248 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 F I F P P V V+ +P +P + ++++KI + F R+K + Sbjct: 249 WCDVEHKFTIPGRAFVPKPDVDVGVVTLVPKKHPLVKLPFKTVEKILRTVFNMRQKWSIK 308 Query: 240 SLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRIT 273 RL E+ L A +++ +R +S E+F RI Sbjct: 309 GGGRLFPEDKRDELAVKLFALADVDSRIRPFEISNEEFARIC 350 >gi|219125196|ref|XP_002182872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405666|gb|EEC45608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 281 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 139/279 (49%), Gaps = 33/279 (11%) Query: 21 PKKYMGQNFLLDLNILKKI-----AESSGSLDGIT-VIEIGAGPGNLTQMLL-TLGARKV 73 PK+ +GQN+L D N + KI +++ + ++E+G G G LT L+ T GA + Sbjct: 11 PKQSLGQNYLKDPNTVAKILRTFHQDATKHRPSVERILELGPGAGALTDRLVETYGAANM 70 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTR 132 IE D++ IL++ +HP L + D ++V + P+ +I NLPY I ++ Sbjct: 71 QAIELDERSVQILRE---KHPG-LRVQHADVMQVSYADLAEAEGQPLVVIGNLPYYITSQ 126 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +LF A + S T+ Q EVG+R+ A +++ YG LSV+ T F I P Sbjct: 127 ILFALADA-SHAGAVHSATVTMQWEVGQRMVAARSTKDYGILSVVFQLYADVTCHFKIPP 185 Query: 193 HVFFPSPKVTSTVI--HFIPHLNPIPCCLES---------LKKITQEAFGKRRKTLRQSL 241 VF+P PKV S +I HF+ P L L+++ F +RRKT+R SL Sbjct: 186 TVFYPKPKVDSALIGLHFLG-----PARLRQRLAGVRPADLRRVVTSTFQQRRKTVRNSL 240 Query: 242 KRL--GGENLLHQAGIE--TNLRAENLSIEDFCRITNIL 276 K+L G E + Q E + R E LS F IT +L Sbjct: 241 KKLCQGDEFSIQQELPEDWASKRPEELSPGQFIEITRLL 279 >gi|313672734|ref|YP_004050845.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM 19672] gi|312939490|gb|ADR18682.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM 19672] Length = 266 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 14/260 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL++ + ++KI +++ V+EIG G G LT +L GA + IE D Sbjct: 16 KKSLGQHFLINQHYIEKILDAAYVSKDSRVLEIGPGCGALTVKILERGA-DLTAIEIDAV 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK +PN +II D K+D + ++ NLPY + +L + Sbjct: 75 LVDFLKRYLHFYPN-FKIIHSDFTKIDKSL---LDGRYNVVGNLPYYVSVPIL------E 124 Query: 142 TWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 E ++T +FQKEV +RI + + Y LSV + +F+IS F+P+ Sbjct: 125 KCTELIENINTMTFMFQKEVADRIISTPSKKSYSSLSVFCQYFFDIKKIFNISGGNFWPT 184 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV STV+HFIP + + + +F +RK L+ +L + L+++ N Sbjct: 185 TKVESTVLHFIPKKRQFDMDEKDFLNLVKLSFSSKRKMLKNNLHSIIDTGLINEFFKRDN 244 Query: 259 LRAENLSIEDFCRITNILTD 278 +RAE LS+EDF N L + Sbjct: 245 VRAEELSVEDFINFYNFLKN 264 >gi|294790209|ref|ZP_06755367.1| dimethyladenosine transferase [Scardovia inopinata F0304] gi|294458106|gb|EFG26459.1| dimethyladenosine transferase [Scardovia inopinata F0304] Length = 376 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 45/305 (14%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + S P K GQNF++D ++KIA + T+IE+G G G+LT LL G Sbjct: 47 IRRLASEINTKPTKKFGQNFVIDPGTVRKIASLATGGKPRTIIEVGPGLGSLTLALLETG 106 Query: 70 ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNIS--SPIR 120 + V+ IE D Q+ + + + + ++ DAL+ D E+ S + Sbjct: 107 S-TVVSIEIDSLLAQKIPSTVHEFMPRADSHFHLVAKDALEFTPSDLEQALGGGKVSHLT 165 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+ ++ + + D +P +S ++ QKEV ER+TA S YG SV W Sbjct: 166 LAANLPYNLAVPIILSLL--DRFPTL-DSFVVMVQKEVAERLTAGPGSKIYGVPSVKLAW 222 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKT 236 +A + IS VF+P+P V S ++ F +SLKK+T AF +RRKT Sbjct: 223 YGQAKLAGTISRTVFWPAPHVDSALVQF----RRTGQRDQSLKKLTFSLIDSAFSQRRKT 278 Query: 237 LRQSLKR-------LGGE-----------------NLLHQAGIETNLRAENLSIEDFCRI 272 L+ +LK+ + E +L + +GI+ + R E LS++DF R+ Sbjct: 279 LKAALKKPLRSLCPVSPETASKAKPLSNSSPTLYSDLFNNSGIDPSRRGETLSVDDFVRL 338 Query: 273 TNILT 277 ++ Sbjct: 339 AQSIS 343 >gi|25027528|ref|NP_737582.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|259507064|ref|ZP_05749964.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|33516940|sp|Q8FQZ5|RSMA_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23492810|dbj|BAC17782.1| putative dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|259165342|gb|EEW49896.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] Length = 289 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 18/279 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N +++I ++ V+E+G G G+LT + L Sbjct: 15 IRALAEKLDVTPTKKLGQNFVHDPNTVRRIVTAADLTPEDHVVEVGPGLGSLT-LALVEK 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D + L + + P ++L ++Q DALKV F + P ++ANL Sbjct: 74 AASVTAVEIDPRLAAELPATFAWRAPGLADKLTVVQKDALKVQQSDF--TTQPTALVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + ++ +P + L ++ Q EV +R+ A S YG SV + + + Sbjct: 132 PYNVSVPVLLHMLA--EFPSITKVL-VMVQLEVADRLAAVPGSKIYGVPSVKASFYGEVS 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSL- 241 I HVF+P+P++ S ++ I P P + + AF +RRKTLR +L Sbjct: 189 KAGTIGKHVFWPAPQIESGLVKIIRTHTPWPQDDATRAKVWPVIDAAFLQRRKTLRAALS 248 Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L A I+ LR E L + D+ R+ ++ Sbjct: 249 GHFGSASAAEEALRAADIDPQLRGERLDVADYVRLAGVI 287 >gi|297243121|ref|ZP_06927059.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD] gi|296889332|gb|EFH28066.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD] Length = 298 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 137/287 (47%), Gaps = 22/287 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI ++G G V+E+G G G+LT +L Sbjct: 20 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAGVKSGDIVMEVGPGLGSLTLAIL 79 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-- 120 GA ++ +E D ++ +++ + + +I DAL V+ + I+ + Sbjct: 80 QTGA-QLTAVEIDPPLARRLPHTVEEFMPKAMQKFNVILKDALTVNADDVPQIAQAKKFT 138 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ + + ++ ++ QKEV +R+ AQ + YG SV W Sbjct: 139 LVANLPYNVATPIILTLLEKFS---NLQNFLVMVQKEVADRLCAQPGNKVYGTPSVKLAW 195 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------LESLKKITQEAFGKR 233 KA I +VF+P+P V S ++ F C E + AF +R Sbjct: 196 YGKAQRAGLIGRNVFWPAPNVDSALVSFTRD-----CTSKGDNNEREGVFAFIDAAFQQR 250 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RKTL +LK E +GI+ R E L+ ++F + D Q Sbjct: 251 RKTLHAALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCQ 297 >gi|118466314|ref|YP_880398.1| dimethyladenosine transferase [Mycobacterium avium 104] gi|166221679|sp|A0QBW0|RSMA_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118167601|gb|ABK68498.1| dimethyladenosine transferase [Mycobacterium avium 104] Length = 318 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 19/283 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL G Sbjct: 22 IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALLDRG 81 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L ++H + RL ++ D L + ++ P ++ANL Sbjct: 82 A-HVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL--AEPPTAVVANL 138 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + + Sbjct: 139 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGRVR 195 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE---AFGKRRKTLRQSL 241 +SP VF+P P+V S ++ + +P P +++ Q AFG+RRKT R + Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFQLVDIAFGQRRKTCRNAF 255 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G + L A I+ R E LSI+DF R+ D Sbjct: 256 VDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298 >gi|171464150|ref|YP_001798263.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193688|gb|ACB44649.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 264 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 17/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL D I+ I + VIEIG G G LT LL+ L ++ I++D Sbjct: 5 RKRFGQNFLQDNGIIYSIVALINPSADMRVIEIGPGLGALTLPLLSNLDHLDLLEIDRDL 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNIGTRLLFN 136 F K++ L + + DALK DF + S +++ NLPYNI + LLF+ Sbjct: 65 VAFWNEKNLQG-----LAVTEGDALKFDFLAWAQNRSTKQGLCKVVGNLPYNISSPLLFH 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +SA + + Q EV ER+ A+ S + RLSV+ R ++ ++ P F Sbjct: 120 LVSA---AASIDEQVFMLQAEVVERMVAKAGSSDFSRLSVMLQARYDMELVLEVPPEAFD 176 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ IP + E +L+K+ AF +RRK LR +L+ + L Sbjct: 177 PRPKVNSAVVRMIPRRDFTLSDAEWSALEKVVAAAFSQRRKMLRTNLQDFA--DRLGLTE 234 Query: 255 IETNLRAENLSIEDFCRITNILT 277 +E RA+++S++ + +L Sbjct: 235 VELKARAQDISVDHYIEWAKVLA 257 >gi|167814329|ref|ZP_02446009.1| dimethyladenosine transferase [Burkholderia pseudomallei 91] Length = 275 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 25/275 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71 H +K GQNFL+D ++ I + G ++EIG G G LT L T G+ Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126 + +E D+ ++ + + LE+ DAL DF +I+ P +RII NLP Sbjct: 66 PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R Sbjct: 120 YNISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + D+ P F P PKV S ++ IPH +P + L ++ AF +RRK LR +L Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPYELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234 Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277 G +L+ G + RAE++ ++++ R+ + Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269 >gi|22298201|ref|NP_681448.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1] gi|27151563|sp|P59157|RSMA_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|22294380|dbj|BAC08210.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1] Length = 265 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 20/243 (8%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V+EIG G G LT+ LL GA +V+ +E D+ L+ R ++I+ D L++ Sbjct: 31 GDRVLEIGPGRGALTRPLLVSGA-EVVAVELDRDLCGQLR--RQFDSERFQLIEGDILRL 87 Query: 108 DFEKFFNISSPI---RIIANLPYNIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERI 162 D +P+ +++AN+PYNI LL + + + P P +E L LL QKE+G+R+ Sbjct: 88 DL-------APLGCNKVVANIPYNITGPLLGHLLGSIARPRRPAFERLILLVQKEIGDRL 140 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES 221 A S YG LSV + + + P F P PKV S V+ PH P + Sbjct: 141 MASPGSKAYGALSVRVQFLATCEKVCAVPPRAFQPPPKVDSVVVCLRPHRTLPRVGSPQW 200 Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277 L+ + ++ F RRK L +LK L + QA G + N RAE LS+ED+ ++ +L Sbjct: 201 LETLLKQGFATRRKMLANALKSLVEPEQVRQALLQLGRDANSRAEALSLEDWLALSEVLR 260 Query: 278 DNQ 280 Q Sbjct: 261 QLQ 263 >gi|295100315|emb|CBK97860.1| dimethyladenosine transferase [Faecalibacterium prausnitzii L2-6] Length = 283 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 20/276 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++T+ Y K GQNF+++ + KI ++SG V+EIG G G LT+ L Sbjct: 10 IRTLCEKYNFALSKGFGQNFIINPGLPPKIVDASGVDKSWGVLEIGPGIGVLTKELARRA 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124 A KV+ IE D++ P+L + + N +++ D LK D E+F + P+ + AN Sbjct: 70 A-KVVSIEVDERLPPLLAETMAGVEN-FKLVLQDVLKADLRALIEEEFPGM--PVAVCAN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I + ++ + D P +LT++ QKE +R+ A + +S + + Sbjct: 126 LPYYITSPIVMKLLG-DRLP--IRNLTVMVQKEAADRLAAAPGTRASSAISCAVSYYATS 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLK 242 +MF +P F+P+PKVTS V+ P + + + AFG+RRKT ++ Sbjct: 183 KLMFTAAPGSFYPAPKVTSAVVRMDIRTTPAVQVEDEDGYFALIRAAFGQRRKTAANAIA 242 Query: 243 RLGGE------NLLHQAGIETNLRAENLSIEDFCRI 272 G + AG + +R E L++EDF + Sbjct: 243 SGLGLPKDKVIAAIEAAGFDARIRPEALTLEDFAAV 278 >gi|289523105|ref|ZP_06439959.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503648|gb|EFD24812.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 278 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 11/256 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL+D NI + + E++ + V+E+G G G LT+ +LT R + VIE D+ Sbjct: 15 KKSLGQNFLVDPNIARWMVENAALNEDDVVLEVGPGKGMLTKEILTSQCRFLHVIEIDKT 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L+ I NR+ +I D L ++ ++ P +++AN+PYNI T L++ I Sbjct: 75 LAPFLEPIVKTSKNRMSVIWGDVLTINLKELS--PPPTKVLANIPYNITTPLIWQ-ILEH 131 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P L L+ Q E+ +R+ A+ + + + KA ++ + P+VF+P+PKV Sbjct: 132 LVPLGTRELLLMLQLELAQRLCAKPKTKDRSPIGITIEKMGKAQIVKKVPPNVFWPTPKV 191 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------RLGGENLLHQA 253 S ++H I + + +++ + AF +RRKTL +L + LL Sbjct: 192 ESAIVHIIIDKDLKLASDHTWRRLLRVAFARRRKTLANNLSCVYDFFKDKDKTSKLLDDL 251 Query: 254 GIETNLRAENLSIEDF 269 + T +RAE L+++D+ Sbjct: 252 KLPTTVRAEELTVDDW 267 >gi|325676279|ref|ZP_08155958.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707] gi|325552840|gb|EGD22523.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707] Length = 296 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 19/279 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I +G TV+E+G G G+LT LL + Sbjct: 23 VRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALLDV- 81 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +V+ +E D + L D + + +RL ++ DA++V + + P ++ANL Sbjct: 82 VDRVVAVEIDPKLAARLPATVADRAPELADRLTVVGADAMRVIPDDV--PAEPTAVVANL 139 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P +L ++ Q EV +R+ A S YG SV + Sbjct: 140 PYNVAVPVLLHLFA--EFPSLRTALVMV-QAEVADRLAATPGSKVYGVPSVKANFFGTVK 196 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 + VF+P P+V S ++ + P P + +K + AF +RRKTLR +L Sbjct: 197 RAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLRAAL 256 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E L AGIE + R E L F R+ N+ Sbjct: 257 AGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 295 >gi|306835652|ref|ZP_07468661.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726] gi|304568496|gb|EFM44052.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726] Length = 287 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 139/279 (49%), Gaps = 20/279 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I P K +GQNFL D N +++I ++ V+E+G G G+LT L+ Sbjct: 15 IRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPADRVVEVGPGLGSLTLGLVET- 73 Query: 70 ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + +E D + L + ++ + RL +++ DAL+V E ++++P ++ANL Sbjct: 74 VEDLTAVEIDPRLAAQLPETVGERAADYAERLRVVEKDALRVTSE---DVTAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L +++ +T+P L ++ Q EV +R+ A S YG SV G+ + Sbjct: 131 PYNVAVPVLLHFL--ETFPSIRRVLVMV-QLEVAQRLAAAPGSKIYGVPSVKAGFYGTVS 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+P + S ++ + P P ++ + AF +RRKTLR +L Sbjct: 188 QAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAAL 247 Query: 242 KRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275 G L AGI+ R E L++ DF R+ + Sbjct: 248 SGHYGSGAAAEEALRAAGIDPQQRGEKLAVADFVRLAGL 286 >gi|256826937|ref|YP_003150896.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641] gi|256583080|gb|ACU94214.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641] Length = 296 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/275 (28%), Positives = 137/275 (49%), Gaps = 22/275 (8%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + + +L + + KK +GQ+FL++ ++++I + + ++E+G G G LT LL Sbjct: 15 RATRAVLEAHGLATKKALGQHFLINEGVVRRICDVAELSCEDDILEVGPGIGTLTVALLH 74 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLP 126 AR+V IE+D +L + +R E+I+ DAL V + ++S +P +++ANLP Sbjct: 75 C-ARRVAAIERDVDLPAVLAETCDFAHDRFELIRCDALSVGPD---DLSFAPNKLVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 Y + L+ D + F +S T++ Q EV +R+ A + +YG +V Sbjct: 131 YAVAATLVL-----DVFERFNSIQSATVMVQSEVADRMAAHPGTKNYGAFTVKLALFAHP 185 Query: 185 TMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F ++P FFP P+V STVI N P + + AF RRKT+ S + Sbjct: 186 VSRFTVAPTNFFPPPRVQSTVIRLDRAEQDNLSPDERRCARMMADAAFATRRKTVANSCR 245 Query: 243 -----RLGG---ENLLHQAGIETNLRAENLSIEDF 269 R+ + +L + I+ R E+LS+E+F Sbjct: 246 AYFAGRVDAASIDQVLAASNIDPRRRGESLSLEEF 280 >gi|258592924|emb|CBE69233.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [NC10 bacterium 'Dutch sediment'] Length = 312 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 137/285 (48%), Gaps = 22/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 H + +L Y ++PK+ +GQ+FL+ + I ++ V+EIG G G LT+ L Sbjct: 14 GHETRALLRQYHLLPKRGLGQSFLVSPTVRDLILRAADVGPQDLVVEIGPGTGVLTEGLA 73 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRII 122 R +I IE+D +L + P + +I DAL+ DF P +++ Sbjct: 74 EQAGR-LIAIERDPGLHRLLAERLGDRPT-VSLICGDALEFDFVNVCGTMCPAYTRAKLV 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY++ T L+ I + + L ++ Q+EV +R+ A Y L++ + Sbjct: 132 SNLPYSVATPLILQLIPLQRY---FSFLLVMVQREVAQRLLASPGEEGYSALTLRCRYEA 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLES---LKKITQEAFGKRRKTLR 238 + + + F+P P V ST++ L P P + S L +I + AFG+RRK LR Sbjct: 189 DVSAVAQVPRTAFYPKPAVDSTLVRL--DLLPGPKVTVHSPGLLFRIVRAAFGQRRKMLR 246 Query: 239 QSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L G + +L AGI+ R E L++++F ++ + L Sbjct: 247 NALLNAGIMTEPADLDRILADAGIDPKRRGETLNLDEFAQLADRL 291 >gi|319943018|ref|ZP_08017301.1| dimethyladenosine transferase dimethyltransferase [Lautropia mirabilis ATCC 51599] gi|319743560|gb|EFV95964.1| dimethyladenosine transferase dimethyltransferase [Lautropia mirabilis ATCC 51599] Length = 282 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 119/240 (49%), Gaps = 13/240 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N H +IP+K GQ+FL D + I ++ G ++EIG G G LT Sbjct: 1 MANHRHDAGREKRPAGVIPRKRFGQHFLADRACIDAIVQAIAPRSGDNLVEIGPGTGVLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 L+ + VIE D+ P L ++Q+ + L ++Q D L+VDF F +RI+ Sbjct: 61 APLVAQTG-HITVIEIDRDLGPRL---AAQYGDALTLVQQDVLQVDFSGF---GQNLRIV 113 Query: 123 ANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI + LL + I+ AD + QKEV +RI A S GRL+V Sbjct: 114 GNLPYNISSPLLLHLIAVADRV----RDQHFMLQKEVVDRIVAGPGS-DMGRLTVFLQNH 168 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + +FD+ P F P PKV S+V+ +P P + L+ A+ +RRK LR++L Sbjct: 169 YQVVKLFDVPPEAFDPPPKVDSSVVRMVPLPRPHTTAIAQLEAALAAAYAQRRKMLRRTL 228 >gi|170699175|ref|ZP_02890228.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10] gi|170135900|gb|EDT04175.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10] Length = 276 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 51/288 (17%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66 Query: 72 -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119 + +++D Q+F P+L E+ DAL DF ++++P + Sbjct: 67 LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176 RI+ NLPYNI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229 + +R M D+ P F P PKV S ++ IP+ ++P+ L ++ A Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAA 221 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 F +RRK LR +L G + RAE++S+ ++ + L Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALA 269 >gi|78067504|ref|YP_370273.1| dimethyladenosine transferase [Burkholderia sp. 383] gi|119365010|sp|Q39D37|RSMA_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77968249|gb|ABB09629.1| dimethyladenosine transferase [Burkholderia sp. 383] Length = 275 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 134/280 (47%), Gaps = 35/280 (12%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L L Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPESP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ ++ + + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 67 LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 NI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 121 NISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTL 237 M D+ P F P PKV S ++ IP+ ++P+ L ++ AF +RRK L Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAAFSQRRKML 229 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R +L G + RAE++S+ ++ + L Sbjct: 230 RNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|256370598|ref|YP_003108423.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM] gi|256009390|gb|ACU52750.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM] Length = 251 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 21/257 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ FL D NI +KI S T++EIG G G LTQ LL L ++ V +IE D++ Sbjct: 4 KKKLGQYFLHDKNIAQKIVNSISFKK--TIVEIGPGMGMLTQYLL-LKSKNVFLIEIDKK 60 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFN 136 + LK + II+++ ++F +++F S +I N PYNI +++LF Sbjct: 61 YVFFLKK-------KFSIIKNNIFNLNFLNWNPQEYF--LSSFTLIGNFPYNISSQILFK 111 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + P E + + FQKEV ERIT++ YG+LSV+ K +F ++ +VF Sbjct: 112 IIKYREYIP--ECIGM-FQKEVAERITSKNKKKSYGKLSVIMQTFYKIEYLFTVNNNVFI 168 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S V+ + I + AF RRK L SLK L ++ I Sbjct: 169 PKPRVKSAVVKMLKKKLNFKIKESIFFNIVKTAFLYRRKKLLNSLKILSFSTEFYKLPI- 227 Query: 257 TNLRAENLSIEDFCRIT 273 N R E LS+ DF +T Sbjct: 228 LNKRVEQLSVNDFILLT 244 >gi|240169906|ref|ZP_04748565.1| dimethyladenosine transferase [Mycobacterium kansasii ATCC 12478] Length = 317 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 19/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL G Sbjct: 22 IRRLAKELEFRPRKSLGQNFVHDANTVRRVVAASGITRADQVLEVGPGLGSLTLALLDRG 81 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L ++H + RL ++ D L + + + P ++ANL Sbjct: 82 A-TVTAVEIDPVLAARLPQTVAEHSHSEIQRLTVLNRDILSLRPQDLAD--EPTAVVANL 138 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ L + ++ P +T++ Q EV ER+ A+ YG SV + + Sbjct: 139 PYNVAVPALLHLLAEF---PSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFHGRVR 195 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIP---CCLESLKKITQEAFGKRRKTLRQSL 241 +SP VF+P P+V S ++ + +P P + + ++ AF +RRKT R + Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDGAFRQQVFELVDIAFAQRRKTSRNAF 255 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + G N L A I+ R E LSI DF R+ Sbjct: 256 AQWAGSGNESANRLLAASIDPARRGETLSIADFVRL 291 >gi|224541089|ref|ZP_03681628.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM 15897] gi|224526013|gb|EEF95118.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM 15897] Length = 272 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 139/267 (52%), Gaps = 21/267 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGAR 71 IL+ + + P K GQNFL+D I++ IA+ + SLD T VIEIG G G LT+ L+ A Sbjct: 13 ILNTFNLKPSKKYGQNFLVDPGIIQSIADHA-SLDKETAVIEIGPGIGALTEQ-LSNKAG 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPYN 128 KV+ E D++ +L H N +EII D +K D E K I ++ NLPY Sbjct: 71 KVLCFEIDERLKEVLSFSLEGHDN-VEIIFQDFMKADLEEACKKLKNYKDICVVTNLPYY 129 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I ++++ +S+ T P L + QKEV ++ +++ SP L ++ + Sbjct: 130 ITSKIITKIVSSST--PI-NRLVAMVQKEVALKLCSEEKSP----LKMMIDYVGDVQYEL 182 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---G 245 ++ HVF P+P V S VI H + + L + + ++ +RKTL +LK L Sbjct: 183 NVPRHVFMPAPHVDSAVISI--HKERVIS--QELIDLIEASYTAKRKTLYNNLKSLYHDQ 238 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272 + LL GI N RAE L+I+D+ RI Sbjct: 239 TKELLESCGIPANKRAEELNIDDYIRI 265 >gi|270284640|ref|ZP_05966446.2| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093] gi|270276584|gb|EFA22438.1| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093] Length = 319 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 19/277 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P K GQNF++D +++I +G G V+E+G G G+LT LL A V +E Sbjct: 47 ISPTKKFGQNFVIDPGTVRRIVREAGVGAGDRVLEVGPGLGSLTLALLETRAH-VTAVEI 105 Query: 79 DQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTR 132 D L + I P +R +I +DALKV + F P ++ANLPYN+ T Sbjct: 106 DPPVAERLPRTIGEFMPDALDRFRVINEDALKVSAAQLPEFADGEPFTLVANLPYNVATP 165 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + +P + L ++ QKEV +R+ A S YG SV W A + Sbjct: 166 IVLTLL--ERFPNLTKFLVMV-QKEVADRLCADPGSKIYGTPSVKLAWYGTAERAGLVGR 222 Query: 193 HVFFPSPKVTSTVIHF-------IPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR 243 +VF+P+P V S ++ F + ++ + ++ AFG+RRKTL +LK+ Sbjct: 223 NVFWPAPNVDSALVLFERAEGGDVTANGAYGTDVDRAFVFELIDAAFGQRRKTLHAALKK 282 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +A I+ R E L+I +F R+ + D Q Sbjct: 283 QVPAAAFERAQIDATRRGETLTIGEFIRLAQAVRDVQ 319 >gi|119718076|ref|YP_925041.1| dimethyladenosine transferase [Nocardioides sp. JS614] gi|119538737|gb|ABL83354.1| dimethyladenosine transferase [Nocardioides sp. JS614] Length = 297 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 24/280 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I +G V+E+G G G+LT LL + Sbjct: 16 VRLLAAELDLRPTKQRGQNFVIDANTVRRIVREAGVTAEDVVLEVGPGLGSLTLALLAVA 75 Query: 70 ARKVIVIEKDQQFFPILKD-----ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRI 121 R V+ +E D P+L I++ P +R E++ DA+++ + +P + Sbjct: 76 GR-VVAVEVD----PVLAGRLPATIAAYAPAQADRFEVVLGDAMRI---QEVPGPTPTAL 127 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ E ++ Q EV +R+ A S YG SV W Sbjct: 128 VANLPYNVSVPVLLHLLTLLP---SLERGLVMVQAEVADRLAAAPGSKVYGVPSVKAAWF 184 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQS 240 + +VF+P+P V S ++ + P E + + AF +RRK LR Sbjct: 185 ADVRRAGAVGRNVFWPAPNVDSGLVAWSRREPPATTATREQVFAVVDAAFAQRRKALRGV 244 Query: 241 LKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ L + L AG++ R E+L +EDF R+ L Sbjct: 245 LRSLAPAESVDAALAGAGVDPLARGESLRVEDFARLAERL 284 >gi|91772907|ref|YP_565599.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242] gi|118600877|sp|Q12XH7|RSMA_METBU RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|91711922|gb|ABE51849.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242] Length = 270 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 130/265 (49%), Gaps = 34/265 (12%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D L I + + + V+EIG G GNLT+ LL A KV VIE D +L Sbjct: 18 QHFLIDERSLDSIVDQAELSEKDVVLEIGGGIGNLTERLLE-KAGKVYVIELDPALVHVL 76 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 KD S + +LEII D LK+D KF +++ANLPY+I + + F + Sbjct: 77 KDRFSDN-EKLEIIPGDVLKLDLPKFN------KVVANLPYSISSPITFKLFKHE----- 124 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 +E L++Q E +R+ A+ N+ +Y RLSV T + A ++ I P F P P+V S V+ Sbjct: 125 FELGILMYQYEFAQRMVAKANTENYSRLSVNTHYFADADIIMKIPPSAFSPPPEVWSAVV 184 Query: 207 HFIPHLNPIPCCLES-----LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE----- 256 +P P + + F +RRK LR ++ + G +LL+ I+ Sbjct: 185 KVVPR----PSSFHTEDPQFFLDLVTAVFLQRRKKLRNAI--VKGNHLLNVPNIKQIVAE 238 Query: 257 -----TNLRAENLSIEDFCRITNIL 276 + RAENL + I N + Sbjct: 239 LPEEFMSKRAENLEPHELAEIANFI 263 >gi|83749340|ref|ZP_00946337.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551] gi|83724018|gb|EAP71199.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551] Length = 281 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 124/261 (47%), Gaps = 15/261 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL+D ++ I + ++EIG G G LT L+ + +V+ +++D Sbjct: 15 RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139 ++ + + ++L + DAL DF +RI+ NLPYNI + LLF+ + Sbjct: 74 ----LVARLQRRFGDKLVVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLFHLSAF 129 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 AD + QKEV ER+ A S + RLSV+ R ++ D+ P F P P Sbjct: 130 ADRV----RDQHFMLQKEVVERMVAVPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPP 185 Query: 200 KVTSTVIHFIP-HLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 KV S V+ IP + P L +L + AF +RRK LR +L L G Sbjct: 186 KVDSAVVRMIPWPADKSPYALVDMRALGTVVTLAFSQRRKVLRNTLGSLREAIDFDALGF 245 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + RAE + + DF + N L Sbjct: 246 DLGRRAEEVPVADFVAVANAL 266 >gi|227501495|ref|ZP_03931544.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725] gi|227077520|gb|EEI15483.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725] Length = 287 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 142/280 (50%), Gaps = 22/280 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTL 68 ++ + I P K +GQNFL D N +++I ++ LD V+E+G G G+LT L+ Sbjct: 15 IRALAEKLDITPTKKLGQNFLHDPNTIRRII-AAADLDPTDHVVEVGPGLGSLTLGLVET 73 Query: 69 GARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 + + +E D + L + + + RL +++ DAL+V E ++++P ++AN Sbjct: 74 -VQDLTAVEIDPRLAAQLPETVGERAEDYAKRLRVVEKDALRVTSE---DVAAPTALVAN 129 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L +++ +T+P L ++ Q EV +R+ A+ S YG SV G+ Sbjct: 130 LPYNVAVPVLLHFL--ETFPSIRRVLVMV-QLEVAQRLAAEPGSKIYGVPSVKAGFYGAV 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP---CCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P + S ++ + P P ++ + AF +RRKTLR + Sbjct: 187 SQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAA 246 Query: 241 LKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275 L G L AGI+ R E L++ DF R+ + Sbjct: 247 LSGHYGSGAAAEEALRAAGIDPKQRGEKLAVADFVRLAGL 286 >gi|73748246|ref|YP_307485.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1] gi|119365021|sp|Q3ZZE6|RSMA_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|73659962|emb|CAI82569.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1] Length = 291 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 138/270 (51%), Gaps = 15/270 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGALTEELLKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +I D LK E+ P +++ANLPY I Sbjct: 79 GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A P ES+ ++ QKEV + I A+ G L++ + +++ + Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTG--DMGLLTLSVRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246 F+P P+V S ++ IP + E K+ + FG RRKTL +L + G Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRI 272 +LL+ AGI+ RAE LS+E++ ++ Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKL 282 >gi|258406021|ref|YP_003198763.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692] gi|257798248|gb|ACV69185.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692] Length = 272 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 19/261 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ +GQNFL+D N ++ I + + G V EIG G G LT+ +L G +V V+EKD+ Sbjct: 21 KRSLGQNFLVDPNTIRAIIGALRASPGDRVFEIGPGRGALTEEMLGQGL-EVSVLEKDRV 79 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L D +HP L +I DA++ +E I R+I NLPYN+ + ++++ ++ Sbjct: 80 LARYLAD---RHPQ-LRVIVGDAMQFAWE---GIRGDWRVIGNLPYNVASPIIWDLVART 132 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD--ISPHVFFPSP 199 P + QKEV +R+ A S YG LSV +T A + ++ + +VF P P Sbjct: 133 ---PAARRMVFTVQKEVAQRLCAAPGSRAYGALSVWV--QTFAGVHYERTLGGNVFRPRP 187 Query: 200 KVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ P + E+L ++ + F KRRK L LK + E L G+ Sbjct: 188 KVDSAVVSLDPAGRSLSQAQQEALGQVLRVCFQKRRKQLGSILKSVWSPELEAWLEAQGL 247 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + +R E LS E F + ++ Sbjct: 248 DRRVRPEALSPEAFLELARLV 268 >gi|149277463|ref|ZP_01883604.1| dimethyladenosine transferase [Pedobacter sp. BAL39] gi|149231696|gb|EDM37074.1| dimethyladenosine transferase [Pedobacter sp. BAL39] Length = 260 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 126/258 (48%), Gaps = 10/258 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D I +I + D V+E+G G G L+ +LL +I+ D Sbjct: 7 KKHLGQHFLTDKKIAARIVDGLVHTDQYREVLEVGPGMGILSDILLDRDYLDTFLIDIDV 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + LKD Q RL I D L +D F +I N PYNI +++LF + Sbjct: 67 ESYEFLKDKYPQLGARL--INGDFLALDLSSIFK--GKYAVIGNFPYNISSQILFKIL-- 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D E + +FQKEV ER ++ + YG LSVL +F + P F P PK Sbjct: 121 DNREHVVE-MVGMFQKEVAERCASKSGTKEYGILSVLIQAYYDIEYLFTVKPGTFNPPPK 179 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + ++ +PC + + + F +RRKTLR +L + ++ + + Sbjct: 180 VNSGVIRLSRNKIDTLPCDEKLFWRTVKAGFNQRRKTLRNALSGVVSKDRMDDHFF-FDK 238 Query: 260 RAENLSIEDFCRITNILT 277 RAE LS++ F +T LT Sbjct: 239 RAEQLSVDQFIELTQHLT 256 >gi|226307847|ref|YP_002767807.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4] gi|229494958|ref|ZP_04388709.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121] gi|259494255|sp|C1A383|RSMA_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226186964|dbj|BAH35068.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4] gi|229318182|gb|EEN84052.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121] Length = 299 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 135/278 (48%), Gaps = 19/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G V+E+G G G+LT L+ + Sbjct: 26 VRALAEEFGVRPTKQLGQNFVHDANTVRRIVTTAGVTRDDVVLEVGPGLGSLTMALMDV- 84 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +VI +E D L K ++ + P +RL +++ DA++V + P ++ANL Sbjct: 85 VDRVIAVEIDPNLAARLPKTVAERAPELADRLTVVEADAMRVLPSQIPG--EPTALVANL 142 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + ++ P + ++ Q EV +R+ A S YG SV + + Sbjct: 143 PYNVAVPVLLHLFASL---PSLRTALVMVQAEVADRLAADPGSKIYGVPSVKANFFGEVR 199 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI---TQEAFGKRRKTLRQSL 241 + +VF+P PKV S ++ + P P + K++ AF +RRKTLR +L Sbjct: 200 RAGAVGRNVFWPVPKVESGLVRIDRYAEPPWPMDEKHRKQVFAAIDAAFAQRRKTLRAAL 259 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AGIE R E L F R+ Sbjct: 260 SGWAGSPAEAERRLLAAGIEPQTRGEMLDAAAFVRLAG 297 >gi|84996835|ref|XP_953139.1| dimethyladenosine transferase [Theileria annulata strain Ankara] gi|65304135|emb|CAI76514.1| dimethyladenosine transferase, putative [Theileria annulata] Length = 377 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KKY GQ+ L + +L KI +++ TV+EIG G GN T L+TL A+KV+ I+ Sbjct: 69 IFVKKY-GQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAIDV 126 Query: 79 DQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + +K+ Q LE+I+ DAL+ F +F +I +ANLP+ I + +F Sbjct: 127 DSRMISEVKNRCFQLGYTNLEVIEADALRTTFPRF-DIC-----MANLPFQISSPFIFKL 180 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 +S P + S L+FQKE ER+ A N YGRL++ T T + IS F P Sbjct: 181 LSHR---PLFRSAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRICKISAGSFNP 237 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 PKV S V+ +P P+ + + F ++R+TLR K+ Sbjct: 238 PPKVDSMVVKIVPRQQPLVVDFGEWDGMIRICFSRKRRTLRSLFKK 283 >gi|172061667|ref|YP_001809319.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6] gi|226729761|sp|B1YWD5|RSMA_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171994184|gb|ACB65103.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6] Length = 273 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 51/288 (17%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66 Query: 72 -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119 + +++D Q+F P+L E+ DAL DF ++++P + Sbjct: 67 LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176 RI+ NLPYNI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229 + +R M D+ P F P PKV S ++ IP+ ++P+ L ++ A Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAA 221 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 F +RRK LR +L G + RAE++S+ ++ + L Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALA 269 >gi|308807535|ref|XP_003081078.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri] gi|116059540|emb|CAL55247.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri] Length = 363 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 19/272 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++++GQ+FL+D +++ E++ +G V+EIG G GNLT LL+ GA V+ +EKD+ Sbjct: 85 RRWLGQHFLIDASVVTDAVEAARLNEGDRVLEIGPGTGNLTCELLSRGA-NVLAVEKDRN 143 Query: 82 FFPIL-KDISSQHPNRLEIIQDDALKVD-FEKFFNISSP----IRIIANLPYNIGTRLLF 135 L K + +H L +++ D LK D F +SP +++AN+PYNI T +L Sbjct: 144 LAEKLRKGLCVEHGEALRLVEGDFLKWDGLAAAFARTSPEQPRAKVVANIPYNITTDVLK 203 Query: 136 NWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + +E + +FQ+EV +R + Y +SV + +K + + P Sbjct: 204 VLLPMGD---VFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRFVPPTC 260 Query: 195 FFPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F P P V S +I F P L P+ Q F ++RK LR +LK + EN + Sbjct: 261 FMPPPNVDSCLIGFKPKEPHELLPLNGTENQFFTFVQACFAQKRKMLRNNLKAVCEENTM 320 Query: 251 HQA----GIETNLRAENLSIEDFCRITNILTD 278 A +R + L++E++ R+ N + + Sbjct: 321 EGAFAMLDRGDKIRPQELTMEEYVRLFNFVRE 352 >gi|171317313|ref|ZP_02906509.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5] gi|171097512|gb|EDT42350.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5] Length = 276 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 51/288 (17%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66 Query: 72 -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119 + +++D Q+F P+L E+ DAL DF ++++P + Sbjct: 67 LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176 RI+ NLPYNI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229 + +R M D+ P F P PKV S ++ IP+ ++P+ L ++ A Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAA 221 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 F +RRK LR +L G + RAE++S+ ++ + L Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALA 269 >gi|271969807|ref|YP_003344003.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021] gi|270512982|gb|ACZ91260.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021] Length = 281 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 130/275 (47%), Gaps = 15/275 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I P K +GQNF++D +++I +G VIE+G G G+LT LL Sbjct: 9 IRNLAEKLDIRPTKKLGQNFVIDGGTVRRIVRVAGLRPDDVVIEVGPGLGSLTLALLP-E 67 Query: 70 ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 R V+ +E D Q + + + + RL ++ DA++V E P ++ANL Sbjct: 68 VRGVVAVEIDPVLAAQLPLTVAERAPEFAERLTVVLADAMRVLPEDLPE-DLPTALVANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + + +T P ++ ++ Q EV +R+ A S YG SV W Sbjct: 127 PYNVSVPVVLHLL--ETLPSL-RTILIMVQSEVADRLAAAPGSKIYGIPSVKAAWYADVR 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + VF+P P V S ++ P E + + AF +RRKTLR +L Sbjct: 184 RAGPVGRTVFWPVPNVDSGLVAMTRREPPSTRAAREDVFAVVDAAFAQRRKTLRAALASW 243 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AGI+ + R E L++EDF RI Sbjct: 244 AGTPAAAEQALRAAGIDPSERGEQLTVEDFARIAE 278 >gi|302342375|ref|YP_003806904.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075] gi|301638988|gb|ADK84310.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075] Length = 284 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 20/281 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + K GQNFL + I S+ V+EIG G G LT L + Sbjct: 4 RLLLERLGLHASKARGQNFLTQPATAQAIVASAAIGPEDFVVEIGPGLGALTVAAGRLAS 63 Query: 71 RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYN 128 R V+ +E D+ L D+ ++ +E DAL +D+ + P+ +I NLPYN Sbjct: 64 R-VLAVEIDRGVHRALMDVLAEEGLQNVEARLMDALDLDWPATREQAGRPLVVIGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + LLF ++A P W + TL+ QKEV R+ A+ +GRL V+ + Sbjct: 123 ITSPLLFALLAAA---PCWRAATLMVQKEVATRLAAKPGGKDWGRLGVMVQSLCQVRAGV 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRL 244 +S FFP P V+S ++H P P+P L ++ + AFG+RRKT+ +L Sbjct: 180 TLSRGQFFPEPNVSSQIVHLTPLEQPLPAALGLSQAWFGQVVKAAFGQRRKTVANALA-- 237 Query: 245 GG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 GG E+ L +A + + RAE LSI + I LT Sbjct: 238 GGLGLERGRVEDALGRAAVAPSRRAETLSIAELGAIALALT 278 >gi|115352811|ref|YP_774650.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD] gi|122322257|sp|Q0BC07|RSMA_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115282799|gb|ABI88316.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD] Length = 276 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 51/294 (17%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66 Query: 72 -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119 + +++D Q+F P+L E+ DAL DF ++++P + Sbjct: 67 LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176 RI+ NLPYNI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229 + +R M D+ P F P PKV S ++ IP+ ++P+ L ++ A Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGELVTAA 221 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 F +RRK LR +L G + RAE++S+ ++ + L + A Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALAARRKAA 275 >gi|167585502|ref|ZP_02377890.1| dimethyladenosine transferase [Burkholderia ubonensis Bu] Length = 275 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 126/277 (45%), Gaps = 39/277 (14%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA----- 70 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66 Query: 71 ------RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRII 122 + +++ Q+F P+L E+ DAL DF +RI+ Sbjct: 67 LHAVELDRDLIVRLQQRFGPLL-----------ELHAGDALAFDFRSLAAAGDKPSLRIV 115 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 116 GNLPYNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRY 172 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRK 235 M D+ P F P PKV S ++ IP+ ++P+ L ++ AF +RRK Sbjct: 173 VMDKMMDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAAFSQRRK 227 Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 LR +L G + RAE++S+ ++ + Sbjct: 228 MLRNTLGDYRETVDFDALGFDLARRAEDVSVAEYVGV 264 >gi|325270787|ref|ZP_08137378.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608] gi|324986903|gb|EGC18895.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608] Length = 290 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 133/262 (50%), Gaps = 15/262 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL+DL+I ++IA++ + I ++EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLVDLSIARRIADTVDACPDIPILEIGPGMGVLTQYLVG-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L + + P E I+ +D L++D + F+ + N PY+I +++ F Sbjct: 63 DAESVAYLYE---KFPTLHEHILGEDFLRMDLSQVFD-GRQFVLTGNYPYDISSQIFFKM 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P T + Q+EV R+ A S YG LSVL +F + +VF P Sbjct: 119 LDYKDLIP---CCTGMIQREVALRMAAGPGSKAYGILSVLMQAWYDVEYLFTVDENVFNP 175 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQ 252 PKV S VI + + + C + K++ + F +RRK LR SL++L + + Sbjct: 176 PPKVKSAVIRMTRNGVTDLGCDGQLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADSFYA 235 Query: 253 AGIETNLRAENLSIEDFCRITN 274 I T R E LSI F +TN Sbjct: 236 QDIMTK-RPEQLSIPQFVELTN 256 >gi|312138652|ref|YP_004005988.1| rRNA dimethyladenosine transferase ksga [Rhodococcus equi 103S] gi|311887991|emb|CBH47303.1| rRNA dimethyladenosine transferase KsgA [Rhodococcus equi 103S] Length = 292 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 19/279 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I +G TV+E+G G G+LT LL + Sbjct: 19 VRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALLDV- 77 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +V+ +E D + L D + + +RL ++ DA++V + + P ++ANL Sbjct: 78 VDRVVAVEIDPKLAARLPATVADRAPELVDRLTVVGADAMRVMPDDV--PAEPTAVVANL 135 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P +L ++ Q EV +R+ A S YG SV + Sbjct: 136 PYNVAVPVLLHLFA--EFPSLRTALVMV-QAEVADRLAATPGSKVYGVPSVKANFFGTVK 192 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 + VF+P P+V S ++ + P P + +K + AF +RRKTLR +L Sbjct: 193 RAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLRAAL 252 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E L AGIE + R E L F R+ N+ Sbjct: 253 AGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 291 >gi|226365142|ref|YP_002782925.1| dimethyladenosine transferase [Rhodococcus opacus B4] gi|254807880|sp|C1AXY5|RSMA_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226243632|dbj|BAH53980.1| dimethyladenosine transferase [Rhodococcus opacus B4] Length = 296 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 19/277 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G TV+E+G G G+LT LL + Sbjct: 22 VRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALLDV- 80 Query: 70 ARKVIVIEKDQQF---FPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +VI +E D P+ + D + +RL ++ DA++V + P ++ANL Sbjct: 81 VDRVIAVEIDPNLAARLPVTVADRAPDLADRLTVVGADAMRVKPSEIPG--EPTALVANL 138 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + S P + ++ Q EV +R+ A S YG SV + Sbjct: 139 PYNVAVPVLLHLFSEL---PSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFGAVR 195 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKK---ITQEAFGKRRKTLRQSL 241 + VF+P PKV S ++ + P P E+ ++ + AF +RRKTLR +L Sbjct: 196 RAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDENRRRVFAVIDAAFAQRRKTLRAAL 255 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E L +AGI + R E L F R+ Sbjct: 256 GGWAGSPAEAERRLLEAGIPPSSRGETLDAAAFVRLA 292 >gi|254247259|ref|ZP_04940580.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184] gi|124872035|gb|EAY63751.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184] Length = 275 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 132/277 (47%), Gaps = 29/277 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+D ++ I + G G ++EIG G G LT L L Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPESP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ ++ + + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 67 LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 NI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 121 NISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 M D+ P F P PKV S ++ IP+ L + L L +I AF +RRK LR + Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPAL--LGEIVTAAFSQRRKMLRNT 232 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L G + RAE++S+ ++ + L Sbjct: 233 LGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|269796309|ref|YP_003315764.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542] gi|269098494|gb|ACZ22930.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542] Length = 320 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 140/298 (46%), Gaps = 29/298 (9%) Query: 1 MTMNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54 M MN+ S++L + + + P K +GQNF+ D ++KI S+G G V+E+ Sbjct: 1 MLMNDTSNALLGPVQIRDLAGRLGVRPTKTLGQNFVHDAGTVRKIVRSAGIEAGQHVVEV 60 Query: 55 GAGPGNLTQMLLTLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 G G G+LT LL G V+ +E D Q + D + + +RL ++ DAL V Sbjct: 61 GPGLGSLTFGLLEAGV-TVVAVEIDPVLAAQLPLTVADRAPEWSDRLTVVLQDALTV--- 116 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKN 167 +P ++ANLPYN+ +L ++ ++SL ++ Q EV +R+ A Sbjct: 117 TELPGPAPTALVANLPYNVAVPVLLTFLE------RFDSLDRVLVMVQAEVADRLAAPPG 170 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKIT 226 + YG SV W A I +VF+P P V S ++ +P+ E + ++ Sbjct: 171 NRTYGIPSVKAAWYASARRTSTIGRNVFWPVPNVDSALVLLERRDHPVTRATRERVFEVV 230 Query: 227 QEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 AF +RRK LR + + L AG++ R E L+++DF RI L D Sbjct: 231 DAAFAQRRKMLRGALAELAGSAAAAQQALEAAGVDPTTRGEQLTVDDFARIAEALDDQ 288 >gi|159030325|emb|CAO91220.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 268 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 12/259 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI P+K GQ++L D +IL +I ++ V+EIG G G LT+ LL GA+ V+ +E Sbjct: 2 KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ + IL Q N +I D L + E+ ++ +++AN+PYNI +L Sbjct: 61 IDRDLWTILNKKFGQQDN-FHLIPGDFLTLKPEQLPPVN---KVVANIPYNITGPILEKL 116 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P P ++S+TLL QKEV ER+ A ++ Y LSV + + D+ F Sbjct: 117 LGSIAHPFTPPYQSITLLLQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPRRAF 176 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-- 252 P P+V S VI +P + P + L + F RRK LR +LK + L Q Sbjct: 177 SPPPRVDSAVIQILPRVFPKNVGNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236 Query: 253 AGIETN--LRAENLSIEDF 269 +E N RAE+LS+ + Sbjct: 237 TQLEINPLARAEDLSLSQW 255 >gi|84497817|ref|ZP_00996614.1| dimethyladenosine transferase [Janibacter sp. HTCC2649] gi|84381317|gb|EAP97200.1| dimethyladenosine transferase [Janibacter sp. HTCC2649] Length = 295 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 130/277 (46%), Gaps = 15/277 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + I P K GQNF++D N +++I +G V+EIG G G+LT LL Sbjct: 9 AAQIRELAARFGIRPTKSWGQNFVIDANTVQRIVRVAGVGPDDVVVEIGPGLGSLTLALL 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIA 123 + +V + + + + P RL ++ DAL+++ +P ++A Sbjct: 69 PVVRHVTVVEVDPILAGALPETVETVAPGVVERLTVVHADALRIEE---LPGDAPTALVA 125 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYNI ++ N++ E + ++ Q EV ER+ A+ S YG SV W + Sbjct: 126 NLPYNISVPVVLNFLERFA---SLERILVMVQLEVAERLAAKPGSKIYGVPSVKAAWYAE 182 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242 T+ ++S VF+P P V S ++ + P E + AF +RRKTLR +L Sbjct: 183 VTLAGNVSRSVFWPVPNVDSGLVKLVRREQPTTDASREQVFACIDAAFAQRRKTLRAALA 242 Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 G L AGI+ R E L + F I + Sbjct: 243 TWAGSPSAAEAALVAAGIDPRTRGEQLDVHQFAAIAS 279 >gi|298675523|ref|YP_003727273.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303] gi|298288511|gb|ADI74477.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303] Length = 269 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 31/280 (11%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + ++L Y +I + Q+FL+D N L +I +S+ + TV+EIGAG GNLT+ + Sbjct: 2 IDSLLDEYGVIGGDH-DQHFLVDDNFLNQIVDSAELTENDTVLEIGAGIGNLTEKIAE-T 59 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 K+ +E D IL + + + N +EII+ D L ++ +F +++ANLPY+I Sbjct: 60 VHKLYAVELDPNLCDILIERFADYDN-VEIIEGDILDIELPEFN------KVVANLPYSI 112 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + + +E L++Q E R+ + KNS Y RL+V T + A+++ Sbjct: 113 SSHITFKLLKHE-----FELGILMYQYEFARRMVSPKNSKDYSRLTVTTNFFADASIIMK 167 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKTLRQSL--- 241 + F P+P+V S V+ IP P + + + FG+RRK LR ++ Sbjct: 168 VPRSAFKPAPEVKSAVVKLIPR----PASFDVVDEDFFLTFVTAVFGQRRKKLRNAILNT 223 Query: 242 -KRLGGEN---LLHQAGIE-TNLRAENLSIEDFCRITNIL 276 +LG N ++++ E N RAENL + I N L Sbjct: 224 NSKLGIANVKEVVNKLPDEYMNKRAENLEPSELAYIANQL 263 >gi|322435995|ref|YP_004218207.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9] gi|321163722|gb|ADW69427.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9] Length = 271 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 127/262 (48%), Gaps = 10/262 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 I K +GQNFL+D + +IA S G L T++EIG G G +T++L T R++I +E D Sbjct: 4 IRKPKLGQNFLVDDDARHRIAGSLGDLSTRTIVEIGPGHGAITEILATR-CRRLIALELD 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L ++PN +++I+ D LK DF + +I NLPY I + +L + + Sbjct: 63 RSLAAELTFRFRENPN-VQVIETDVLKFDFASIAEEGETLDVIGNLPYYITSDILLHLFA 121 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A L+ Q+EV +R++A YG LS T + +F + P F P P Sbjct: 122 AAPL---LRRAALMMQREVADRVSAHPGVRDYGLLSASTQMYAQVDNLFTLPPAAFNPPP 178 Query: 200 KVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ--AG 254 V STV+ F P + + ++ F ++RKTL +L+ G L Q A Sbjct: 179 DVFSTVLRLSFAPRFTELGVDPIGFDRFLRKCFAQKRKTLHNNLRVAGYSPEALAQWPAT 238 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I RAE LS+E + L Sbjct: 239 IPPQARAEQLSLEQMSTLYGAL 260 >gi|166363194|ref|YP_001655467.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843] gi|166085567|dbj|BAG00275.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843] Length = 268 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 12/259 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI P+K GQ++L D +IL +I ++ V+EIG G G LT+ LL GA+ V+ +E Sbjct: 2 KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ + IL Q N +I D L + E+ ++ +++AN+PYNI +L Sbjct: 61 IDRDLWTILNKKFGQQDN-FHLIPGDFLSLKPEQLPPVN---KVVANIPYNITGPILEKL 116 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P P ++S+TLL QKEV ER+ A ++ Y LSV + + D+ F Sbjct: 117 LGSIAHPFTPPYQSITLLVQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPWRAF 176 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-- 252 P P+V S VI +P + P + L + F RRK LR +LK + L Q Sbjct: 177 SPPPRVDSAVIQLLPRVLPNNVSNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236 Query: 253 AGIETN--LRAENLSIEDF 269 +E N RAE+LS+ + Sbjct: 237 TQLEINPLARAEDLSLSQW 255 >gi|107023643|ref|YP_621970.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054] gi|116690728|ref|YP_836351.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424] gi|170734070|ref|YP_001766017.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3] gi|122064286|sp|Q1BTQ8|RSMA_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221651|sp|A0KAD1|RSMA_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729762|sp|B1JY71|RSMA_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|105893832|gb|ABF76997.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054] gi|116648817|gb|ABK09458.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424] gi|169817312|gb|ACA91895.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3] Length = 275 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 35/280 (12%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+D ++ I + G G ++EIG G G LT L L Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPESP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ ++ + + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 67 LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 NI + LLF+ ++ F +++ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 121 NISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTL 237 M D+ P F P PKV S ++ IP+ ++P+ L +I AF +RRK L Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEIVTAAFSQRRKML 229 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R +L G + RAE++S+ ++ + L Sbjct: 230 RNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|253582223|ref|ZP_04859446.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725] gi|251835762|gb|EES64300.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725] Length = 264 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 17/264 (6%) Query: 22 KKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D +L+KI E S + T++EIG G G LT +LL A+KV+ +E D+ Sbjct: 6 KKKFGQNFLTDQKEVLRKIMEVSDVNENDTILEIGPGEGALTALLLD-KAQKVVAVEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ + +P + ++ +D L+ D +++ + I+++AN+PY I + ++ I Sbjct: 65 DLEKILRKKFNDNP-KYTLVMNDVLETDLKEYLTLG--IKVVANIPYYITSPIINKLIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + ++ QKEV ERI A+K L++ + KA +F I F P PK Sbjct: 122 ---REIIDEIYIMVQKEVAERICARKGKER-SVLTLAVEYFGKAEYLFTIPKEAFTPIPK 177 Query: 201 VTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQ 252 V S + + + + + K + AF +RK L + LG +L + Sbjct: 178 VDSAFMSIKLYKDDKYKKIIEEDIFFKYVKAAFANKRKNLLNNFTALGISKDELRKILSE 237 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 AGI+ RAENL+IEDF + + Sbjct: 238 AGIKETERAENLTIEDFINLIAVF 261 >gi|160903048|ref|YP_001568629.1| dimethyladenosine transferase [Petrotoga mobilis SJ95] gi|160360692|gb|ABX32306.1| dimethyladenosine transferase [Petrotoga mobilis SJ95] Length = 275 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 136/270 (50%), Gaps = 18/270 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y I KK +GQNFL + + +I + S + +IEIG G G LT+ + A+KV Sbjct: 7 LKKYDIRLKKGLGQNFLSNSTVSHEIVKKSEIDENDVIIEIGTGNGILTEEIAK-KAKKV 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D++ P+L++ N +EI +D L D KF +I ++ IAN+PY I +++ Sbjct: 66 ITFEIDERLKPLLEERFEGSKN-VEIHFEDFLNTDLSKFKDIPK-LKYIANIPYYISSKI 123 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L P +E +FQKE G+R+ A K+ Y LS+ + D+S + Sbjct: 124 LEKIFEES---PKFEYAIFMFQKEFGQRLMA-KSKKSYSPLSIFVQTYCTVERIMDVSKN 179 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLK-----KITQEAFGKRRKTLRQSLKRL--GG 246 F P PKV S ++ F NP+ +E + K F KRRKT++ +LK + Sbjct: 180 NFIPIPKVDSVILKF----NPVYKYVEEIDPKDFMKFVHICFSKRRKTIKNNLKEIIPDT 235 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L + I+ + R E++ +E + ++ L Sbjct: 236 EKYLTEVQIDPSSRPEDIPLETYIQLYKKL 265 >gi|255082199|ref|XP_002508318.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299] gi|226523594|gb|ACO69576.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299] Length = 326 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 119/241 (49%), Gaps = 19/241 (7%) Query: 6 KSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 K HSL K +H I K GQ+ L + I+ I E G V+EIG G G Sbjct: 21 KKHSLASSAGQKKNATHGGIQFLKSYGQHILKNPMIVNSIVEKGGVKSTDVVLEIGPGTG 80 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISS 117 NLT LL A+KVI IE D + L+ + H L II D LKVD +F++ Sbjct: 81 NLTMRLLET-AKKVIAIEFDPRMVLELQRRVQGTPHQQNLTIISGDFLKVDLP-YFDVC- 137 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +AN+PY I + L+F +S P + + TL+FQ+E R+ Q P Y RLSV Sbjct: 138 ----VANVPYQISSPLVFKLLSHR---PMFRAATLMFQREFAMRLCVQPGDPLYCRLSVN 190 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKT 236 T + T + + + F P PKV S+V+ P ++ IPC + + + FG++ KT Sbjct: 191 TQLLARTTHLLKVGKNNFRPPPKVDSSVVRIEPRPISTIPCNFKEWDGLVRLCFGRKNKT 250 Query: 237 L 237 L Sbjct: 251 L 251 >gi|147669028|ref|YP_001213846.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1] gi|189028805|sp|A5FS52|RSMA_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146269976|gb|ABQ16968.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1] Length = 291 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 15/270 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +I D LK E+ + P +++ANLPY I Sbjct: 79 GQVIAVEVDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQNVPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A P ES+ ++ QKEV + I A+ G L++ + +++ + Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTG--DMGLLTLSIRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246 F+P P+V S ++ IP + E K+ + FG RRKTL +L + G Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRI 272 +LL+ AGI+ RAE LS+E++ ++ Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKL 282 >gi|320107650|ref|YP_004183240.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4] gi|319926171|gb|ADV83246.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4] Length = 264 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQNFL+D +IA++ G + TV+EIG G G++T +L A+K+I IE D+ Sbjct: 6 KPKLGQNFLVDDGARHRIADALGDVSQRTVLEIGPGHGSITSILAE-RAKKLICIELDRS 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L+ HPN +EII+ D L DF ++ NLPY I + +L + + Sbjct: 65 LAPELRFKFRNHPN-VEIIEADVLHADFAALLGEDETADLVGNLPYYITSDILLHLYAQS 123 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ Q+EV +RI+A + +G LS + +F + P F P P V Sbjct: 124 ER---LRMAVVMMQREVADRISASPGTRDFGLLSATSQMYADVENLFTLPPEAFSPPPDV 180 Query: 202 TSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------ENLLHQA 253 S+V+ F P + + + F ++RKTL +L R GG Q Sbjct: 181 HSSVLRLTFAPRFAELHVEAKPFDAFLKMCFQQKRKTLSNNL-RAGGVSPERIAAACAQT 239 Query: 254 GIETNLRAENLSIE 267 + +RAE +++E Sbjct: 240 DVSPTVRAEAMTLE 253 >gi|296169879|ref|ZP_06851491.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895435|gb|EFG75137.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 317 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 134/276 (48%), Gaps = 19/276 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQNF+ D N +++I ++G V+E+G G G+LT LL GA V +E D Sbjct: 33 PRKSLGQNFVHDANTVRRIVSTAGVGRSDHVLEVGPGLGSLTLALLDRGA-AVTAVEIDP 91 Query: 81 QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L ++H +RL ++ D L + ++ + P ++ANLPYN+ L + Sbjct: 92 VLAERLPLTVAEHSHSEIHRLTVLNRDVLTLGPDEL--AAEPNAVVANLPYNVAVPALLH 149 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + AD P +++T++ Q EV ER+ A+ YG SV + +SP VF+ Sbjct: 150 LL-ADF--PSIQTVTVMVQAEVAERLAAEPGGKDYGVPSVKVRFFGTVRRCGTVSPAVFW 206 Query: 197 PSPKVTSTVIHFIPH-LNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247 P P+V S ++ + P P + ++ AF +RRKT R + G Sbjct: 207 PIPRVYSGLVRIDRYPTAPWPTDEAFRRQVFRLVDIAFAQRRKTARNAFVDWAGSGNESA 266 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 N L A I+ R E LS++DF R+ T+ D A Sbjct: 267 NRLLAASIDPARRGETLSVDDFVRLLRRSTEPADTA 302 >gi|295675488|ref|YP_003604012.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002] gi|295435331|gb|ADG14501.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002] Length = 280 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 19/267 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H + +K GQNFL+D+ ++ I + G ++EIG G G LT+ L L Sbjct: 10 HQGHLARKRFGQNFLVDMGVIDSIVDVIRPKRGERMVEIGPGLGALTEPLIERLATPESP 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK ++ LE+ DAL+ DF ++++P +RI+ NLPY Sbjct: 70 LHAVELDRDLIGRLK---TKFGELLELHSGDALEFDFG---SLAAPGDKASLRIVGNLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ T+ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 124 NISSPLLFHLA---TFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P PKV S ++ IP+ + +P E+ L ++ AF +RRK LR +L L Sbjct: 181 LDVPPESFQPPPKVDSAIVRMIPYERHELPMVDENVLGEVVTAAFSQRRKMLRNTLAALR 240 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272 G + RAE++ + ++ + Sbjct: 241 DTVDFDALGFDLQRRAEDVPVAEYVSV 267 >gi|302552007|ref|ZP_07304349.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM 40736] gi|302469625|gb|EFL32718.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM 40736] Length = 295 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ +E+G G G+LT LL + Sbjct: 15 IRDLATTLGVRPTKQRGQNFVIDANTVRRIVRTAQVRPDDVAVEVGPGLGSLTLALLEV- 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L I+++ P+R + ++ DA+ V +P ++ANL Sbjct: 74 ADRVTAVEIDDVLAAALPATITARMPDRADRFALVHCDAMHV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + DT+P +L ++ Q EV +R+ A S YG SV W + Sbjct: 131 PYNVAVPVLLHML--DTFPTIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTTASKAEVFAVVDAAFAQRRKTLRAALAG 247 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 248 WAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283 >gi|218249123|ref|YP_002374494.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801] gi|226729777|sp|B7JWJ7|RSMA_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218169601|gb|ACK68338.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801] Length = 272 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 13/267 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L +I E++ V+EIG G G LT+ LL L + ++ +E D+ Sbjct: 4 PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFN 136 L S + N +++ D L +D E+F +++AN+PYNI + +L Sbjct: 63 DLCYRLAK-SFGNFNHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILEK 121 Query: 137 WISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + + P P +E + LL QKEV +RI A S YG LSV T + + + ++ Sbjct: 122 LLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSKA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249 F P PKV S VI P P + L ++ + F RRK L +LK + ++ L Sbjct: 182 FDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDKDHLTLL 241 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L Q I +RAE LS+E + +N+L Sbjct: 242 LDQLQINPQVRAEELSLEQWIMFSNLL 268 >gi|283782577|ref|YP_003373331.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05] gi|283441107|gb|ADB13573.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05] Length = 302 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 22/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI ++ G V+E+G G G+LT +L Sbjct: 24 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 83 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IR 120 GA ++ +E D ++ +++ Q + +I DAL V+ + I+ Sbjct: 84 QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 142 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ + + ++ ++ QKEV +R+ AQ + YG SV W Sbjct: 143 LVANLPYNVATPIILTLLEKFSN---LQNFLVMVQKEVADRLCAQPGNKVYGTPSVKLAW 199 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------LESLKKITQEAFGKR 233 KA I +VF+PSP V S ++ F + C E + AF +R Sbjct: 200 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRN-----CTGKGDNNEREGVFAFIDAAFQQR 254 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RKTL +LK E +GI+ R E L+ ++F + D Sbjct: 255 RKTLHAALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKD 299 >gi|68066927|ref|XP_675435.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA] gi|56494621|emb|CAH94666.1| dimethyladenosine transferase, putative [Plasmodium berghei] Length = 362 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 149/325 (45%), Gaps = 61/325 (18%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE----------------------- 41 + +LKT+L + PK+ +GQN+L D NI+KK+ + Sbjct: 22 DDEQNLKTLLPSREFKPKRSLGQNYLKDENIIKKMIQAIELDSSQFVLMKEKKKKKNLLK 81 Query: 42 ----------------------------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 S +G +IE+G G G L++ L + + Sbjct: 82 SKKDKIQDETDEKNKLKINENNCNSKNMESLKNEGKGIIELGCGLGQLSKHLFK-KYKNM 140 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTR 132 IE D + I IS P + I DD L++++++ N ++ + +I NLP+ I ++ Sbjct: 141 TAIEIDSRALTI---ISRTMPG-FDFIHDDVLQINYKELSINKNTKLSVIGNLPFYITSQ 196 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +LF + + + E + Q EVG+RI A++N Y LS+L T ++F I Sbjct: 197 ILFCLLD---FYKYIEQAVVTIQYEVGQRIVAKQNDKDYSILSILFSLYTHPYLLFKIPS 253 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLH 251 + F+P PKV + V+ I + C L LK++ + AF +RRK L+ SLK L N+ + Sbjct: 254 NAFYPIPKVEAAVMKIIFKKHNFNCNLLFLKQVLKHAFQQRRKKLKSSLKGLLNMYNIQN 313 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 ++LR + L E F +TNIL Sbjct: 314 LPMAFSDLRPQQLYPEQFVELTNIL 338 >gi|88604257|ref|YP_504435.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1] gi|119365031|sp|Q2FSA9|RSMA_METHJ RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|88189719|gb|ABD42716.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1] Length = 256 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 24/267 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + Y Q+FL D I+ +IA+ + G V+EIG G G LT+ LL GAR VI +E D+ Sbjct: 2 RAYRDQHFLTDPRIVARIADIL-DISGRIVLEIGPGEGILTEALLERGAR-VISVELDRT 59 Query: 82 FFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L + S L ++Q DA+KV F + +ANLPY+I + + F + Sbjct: 60 LIERLSRRFASEIADGSLTLLQGDAVKVPLPPFEIV------MANLPYSISSPITFRLLD 113 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 +E+ L++QKE +R+ A + GRLS++ +A FD+ P F P P Sbjct: 114 IG-----FEAAILMYQKEFADRMMAHPGTRDCGRLSIMLQTYARANRCFDLPPGAFSPPP 168 Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG-------ENLLH 251 V STV+ P P + + + +E F +RRKT++ +LK L G ++++ Sbjct: 169 AVRSTVMWIEPREPLFPIHDRKIYEDLVRELFTRRRKTVQSTLKALAGMFGKEKIDSVVR 228 Query: 252 QAGIET-NLRAENLSIEDFCRITNILT 277 E + R E L +EDF I+N L+ Sbjct: 229 DLNPEILSSRPEALYLEDFATISNQLS 255 >gi|227494872|ref|ZP_03925188.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM 15436] gi|226831324|gb|EEH63707.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM 15436] Length = 310 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 141/296 (47%), Gaps = 30/296 (10%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I + I P K +GQNF+ D ++KI + G V+EIG G G+LT LL Sbjct: 14 NVREICAALNIQPTKTLGQNFVHDGGTVRKIIAAGRVTAGEHVLEIGPGLGSLTLGLLEA 73 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKVDFEKFFNIS--------- 116 G R V +E D L + + L ++ D L+V + N + Sbjct: 74 GCR-VTAVEIDPVLATALPSTVAGQGSADLPLRVLLKDGLQVRSDAELNEAPLINGEIVE 132 Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 +P R++ANLPYN+ L+ N++ + +P E L ++ Q EV +R++A YG Sbjct: 133 WEAPTRLVANLPYNVAVPLVLNFL--EHFPSIQEIL-VMVQTEVAQRLSATPGGRIYGVP 189 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-------PHLNPIPCCLESLKKITQ 227 SV W A M IS +F+P P V S+++ P L E++ K+ Sbjct: 190 SVKAAWYGHAEMAGTISRQIFWPVPNVDSSLVRITRYAAGEGPELGEPAVSKEAVFKLVD 249 Query: 228 EAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 AF +RRKTLR +LK G E LL +AGI++ R E L I +F + T+ Sbjct: 250 AAFAQRRKTLRAALKNWAGNATLAEELLAKAGIDSVRRGETLDINEFVALGRAATE 305 >gi|73670681|ref|YP_306696.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro] gi|118600876|sp|Q466S6|RSMA_METBF RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|72397843|gb|AAZ72116.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro] Length = 287 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 31/282 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++++L Y I + Q+FL+D L +I ++ V+EIGAG GNLT+ L Sbjct: 12 VRSLLKKYNIKGGTF-DQHFLVDAGYLDRIVAAAELGPKDVVLEIGAGVGNLTERLAK-K 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +KVI IE D +L D + N +EII DALKV+F +F +I++NLPY+I Sbjct: 70 VKKVIAIELDPVLVRVLHDRFDKVGN-IEIIAGDALKVEFPEF------DKIVSNLPYSI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + ++ L++Q E R+ +Q N Y RL+V T + A+++ Sbjct: 123 SSEITFKLLRHK-----FKLGILMYQYEFAARMVSQPNCKDYSRLTVDTCYFADASILMK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG 246 + F P+P+V S VI +P P+P ++ F +RRK LR ++ L Sbjct: 178 VPKSAFQPAPEVDSAVIKLVPR--PVPFEVKDQAFFMNFVSAVFSQRRKKLRNAI--LNT 233 Query: 247 ENLLHQAGIETNL----------RAENLSIEDFCRITNILTD 278 LL I+ + RAENL+ E+ ++ N + D Sbjct: 234 NYLLKIPNIKEVISRLPEDMMSKRAENLTPEELAQVANHIID 275 >gi|298253263|ref|ZP_06977055.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1] gi|297532658|gb|EFH71544.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1] Length = 298 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 22/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI ++ G V+E+G G G+LT +L Sbjct: 20 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 79 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IR 120 GA ++ +E D ++ +++ Q + +I DAL V+ + I+ Sbjct: 80 QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 138 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ + + ++ ++ QKEV +R+ AQ + YG SV W Sbjct: 139 LVANLPYNVATPIILTLLEKFSN---LQNFLVMVQKEVADRLCAQPGNKVYGTPSVKLAW 195 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------LESLKKITQEAFGKR 233 KA I +VF+PSP V S ++ F + C E + AF +R Sbjct: 196 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRN-----CTGKGDNNEREGVFAFIDAAFQQR 250 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RKTL +LK E +GI+ R E L+ ++F + D Sbjct: 251 RKTLHAALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKD 295 >gi|300781662|ref|ZP_07091516.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC 33030] gi|300533369|gb|EFK54430.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC 33030] Length = 302 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 139/282 (49%), Gaps = 28/282 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GIT--VIEIGAGPGNLTQMLL 66 ++ + ++ P K +GQNF+ D N +++I ++ + GI V+E+G G G+LT L+ Sbjct: 31 IRALAEELEVSPTKKLGQNFVHDPNTVRRIVAAADLEEPGIAEMVLEVGPGLGSLTLGLI 90 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 + A V+ +E D + L + +++ ++L ++ DAL V + P ++AN Sbjct: 91 DV-ANHVVAVEIDPRLAAKLPETAAERSDADKLTVLNMDALMVSYADLDR--EPTALVAN 147 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + + +P L ++ Q EV +R+ A S YG SV + Sbjct: 148 LPYNVAVPVLLHLL--EEFPSIRRVLVMV-QLEVADRLAAAPGSKIYGVPSVKASFYGDV 204 Query: 185 TMMFDISPHVFFPSPKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 I +VF+P+P + S ++ F L P + + AF +RRKTLR Sbjct: 205 RKAGTIGKNVFWPAPNIESGLVRIDVNETFDRSLRP------KVFPLIDAAFAQRRKTLR 258 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 L + G E L AGI+ LR E LS+EDF R+ + Sbjct: 259 ACLTGVYGSGPAAEEALRAAGIDPGLRGEKLSVEDFVRLAEV 300 >gi|327335119|gb|EGE76830.1| dimethyladenosine transferase [Propionibacterium acnes HL097PA1] Length = 298 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 26/286 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66 S++ I + P K GQNF+ D N +++I + G+ D VIE+G G G+LT LL Sbjct: 11 SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAAD--RVIEVGPGLGSLTLGLL 68 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122 GA +V+ IE D+ L ++ + P RLE++ DAL V K + P ++ Sbjct: 69 ETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTALV 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 125 ANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWYA 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI----PHLNPI-PCCLES-LKKITQEAFGKRRKT 236 +A + ++ P VF+P P V S ++ PH++ P S + ++ AF RRK Sbjct: 182 EAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRKM 241 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 242 LRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287 >gi|296118236|ref|ZP_06836817.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM 20306] gi|295968794|gb|EFG82038.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM 20306] Length = 280 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 18/279 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K GQNFL D N +++I ++ D V+E+G G G+LT LL Sbjct: 10 IRNLAEKLDVSPTKKWGQNFLHDPNTIRRIVAAADLTDDDHVVEVGPGLGSLTLGLLDEA 69 Query: 70 ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D + L + +H ++L ++ DAL++D E+ + +P ++ANL Sbjct: 70 AH-VTAVEIDPRLAGELPATVQWRAPEHVDKLTLLHKDALRIDGEE---LGTPTALVANL 125 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + +P + + ++ Q EV +R+ A S YG SV + Sbjct: 126 PYNVAVPVLLHIL--ELYPSL-QRVLVMVQLEVADRLAADPGSKIYGVPSVKASFYGNVR 182 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 +I HVF+P+P + S ++ L P + L + AF +RRKTLR +L Sbjct: 183 KAGNIGKHVFWPAPNIESGLVRI--DLYPPRERPKKLWPLIDAAFAQRRKTLRAALSGFY 240 Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G E L +AGIE LR E +SI+DF R+ + N Sbjct: 241 GSGAAAEQALREAGIEPTLRGEKISIDDFLRLAAVGESN 279 >gi|113953175|ref|YP_730799.1| dimethyladenosine transferase [Synechococcus sp. CC9311] gi|123031699|sp|Q0I9S3|RSMA_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113880526|gb|ABI45484.1| dimethyladenosine transferase [Synechococcus sp. CC9311] Length = 277 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 11/271 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L++ +L +I E++ DG V+E+G G G LT+ LL A + +E D+ Sbjct: 9 RKRFGQHWLINERVLDRIVEAAELQDGDRVLEVGPGRGALTERLLASAAAAIHAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + HP + + + D L V E + + +++AN+PYNI LL I Sbjct: 69 LVAGLQQTFASHP-KFSLQEGDVLSVPLELSGGVPA-NKVVANIPYNITGPLLDRLIGRL 126 Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P ++ L LL Q EV +RI A+ ++ LSV + + + + P F P P Sbjct: 127 DRPVDFSYQRLVLLVQHEVAQRIRARPGHSNFSALSVRMQLLGRCSHVCPVPPRCFQPPP 186 Query: 200 KVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH----Q 252 KV S VI F P P ++++ + AF RRK LR +L +G +LL + Sbjct: 187 KVQSEVICIDPFPPERRPTAALSRGVERLLKMAFLSRRKMLRNTLAPVGSTDLLQSLAEE 246 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283 AGI R ++++ E + + L +A Sbjct: 247 AGISLQQRPQDVAPEAWVALAKGLNQVDSVA 277 >gi|298246521|ref|ZP_06970327.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963] gi|297554002|gb|EFH87867.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963] Length = 294 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 34/281 (12%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L+ +L + + P K GQNFL+D ++L++I E++ V+E+G+G G LT+ L Sbjct: 18 DLRNLLYAHGMRPNKAFGQNFLIDRSVLQQIVEAAEINANEEVLEVGSGTGVLTRELAQ- 76 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 AR+V+ +E ++ +L+ PN +E+++ + L ++ + F P +++ANLPY Sbjct: 77 EARRVVAVELERDMLTLLEKTVGDRPN-VELVERNLLFINPQDHFE-HRPYKLVANLPY- 133 Query: 129 IGTRLLFNWISADTWPPFWES------LTLLFQKEVGERITAQKNSPHYGRLSVL---TG 179 +I+A T+ F ES L ++ Q EV +RI A +P G LSVL Sbjct: 134 --------YITAPTFRHFLESQNPPRLLVVMVQLEVAQRIVA---AP--GDLSVLGVSIQ 180 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237 + K ++ + F+P+PKV S ++ + + E + ++ Q F ++RK L Sbjct: 181 FYGKPRIVSKVPAQAFYPAPKVDSAILRIDVNDETLLTLEERDRFFRVVQAGFAEKRKQL 240 Query: 238 RQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 SL K L QAGIE N RAE LSIE++ ++ Sbjct: 241 HNSLTHALHYKNEVVRACLSQAGIEANRRAEMLSIEEWMQL 281 >gi|224004354|ref|XP_002295828.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209585860|gb|ACI64545.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 275 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 134/273 (49%), Gaps = 27/273 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDG--ITVIEIGAGPGNLTQMLL-TLGARKVIVIE 77 PK+ +GQN+L D N + KI + + + +E+G G G LT +L+ ++G + IE Sbjct: 11 PKQSLGQNYLRDGNTVAKICRAFATQQKTQLRAVELGPGAGALTDVLVNSIGKPNLQCIE 70 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136 DQ+ +L S +HP L I D L+ D+ + + P+ II NLPY I +++LF Sbjct: 71 IDQRSVELL---SEKHPE-LRIHHLDVLQADYPQLSIDEKGPLSIIGNLPYYITSQILFA 126 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 A + S T+ Q EVG RI A YG LSV+ + F I P VF+ Sbjct: 127 LADA-SHSNAVRSATVTMQYEVGRRIVAPTRCKDYGILSVVFQLYADCKIHFKIPPTVFY 185 Query: 197 PSPKVTSTVI--HFIPHLNPIPCCLE---------SLKKITQEAFGKRRKTLRQSLKRLG 245 P PKV S +I HF+ P L +L+ + F +RRKT+R L+ L Sbjct: 186 PQPKVDSALIGLHFLG-----PTALRRRLAGVSPSNLRAVVTATFQQRRKTVRNGLRNLA 240 Query: 246 GENLLHQAGIE--TNLRAENLSIEDFCRITNIL 276 L+Q + +++R E L+ F +T +L Sbjct: 241 LTFALNQELPKNWSSMRPEELTPGQFVEVTRLL 273 >gi|116750733|ref|YP_847420.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB] gi|116699797|gb|ABK18985.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB] Length = 285 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 16/269 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQ+FL ++I + TV+EIG G G LT+ +L L AR + ++E D+ Sbjct: 20 PRKRFGQHFLDHSATAEQIVRCAEFDASDTVVEIGPGLGALTRFILPLAAR-LHLVELDR 78 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWIS 139 L++ + +++ + + DA+ DF + P+ ++ NLPYNI + LLF+ + Sbjct: 79 DLATYLEE-NLPAGSQVRLHRQDAVTFDFNALAEAAGQPLVVLGNLPYNITSPLLFHLLD 137 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEVG R+TA + YG LSVL + +F + P F+P P Sbjct: 138 SVQA---VKRAVFMVQKEVGARLTASPGTRDYGVLSVLLAVYAEVKRLFTVGPQQFYPPP 194 Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG------ENLL 250 KV S V+ + +P+P L L+++ AF +RRKTL SLK G +++ Sbjct: 195 KVESMVLR-LDFKHPLPPDLPPFGLLRRLVSIAFQQRRKTLHNSLKGTYGGQGGGLQDVF 253 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + G+ LR + L+ F + L ++ Sbjct: 254 AKCGVAPGLRPDALTPGQFVELCKALKES 282 >gi|148239702|ref|YP_001225089.1| dimethyladenosine transferase [Synechococcus sp. WH 7803] gi|166221710|sp|A5GLH7|RSMA_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147848241|emb|CAK23792.1| Dimethyladenosine transferase [Synechococcus sp. WH 7803] Length = 280 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 123/256 (48%), Gaps = 15/256 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQ++L D +L +I ++S D V+E+G G G LT+ LL A V +E D+ Sbjct: 8 PRKRFGQHWLRDERVLDRILDASDLGDDDRVLEVGPGRGALTERLLASSAAAVHAVELDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+D P R + + D L V + +++AN+PYNI LL I Sbjct: 68 DLVAGLQDRFGDSP-RFSLREGDVLAVPL-TLPDGQRATKVVANIPYNITGPLLERLIGR 125 Query: 141 DTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P P ++ L LL QKEV ERI A+ + + LSV K + + + P F P Sbjct: 126 LDQPVDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAKCSSVCPVPPRCFQPP 185 Query: 199 PKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLR------QSLKRLGGENL 249 PKV S VI P P P ++++ ++AF RRK LR Q L L E + Sbjct: 186 PKVHSEVIRLDPLPLEQRPDPVICRRVERLLKQAFLARRKMLRNTLTVSQPLSEL--ETI 243 Query: 250 LHQAGIETNLRAENLS 265 QAGI+ R + ++ Sbjct: 244 TQQAGIDLRQRPQEVA 259 >gi|182415366|ref|YP_001820432.1| ribosomal RNA adenine methylase transferase [Opitutus terrae PB90-1] gi|254807877|sp|B1ZW80|RSMA_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|177842580|gb|ACB76832.1| ribosomal RNA adenine methylase transferase [Opitutus terrae PB90-1] Length = 277 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 14/265 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L+ PK+++GQNFL+D NI++K E + G V+EIG G G LT LL GA Sbjct: 9 RELLAQLGHQPKRFLGQNFLVDGNIVRKSLELAQVRRGDAVVEIGPGLGTLTGALLEAGA 68 Query: 71 RKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYN 128 +V +EKD+ L + +HP+ +++ DA++ ++ +I+ANLPY Sbjct: 69 -EVWAVEKDRTLHAHLSSTLQPRHPDTFHLLEADAVEHPLADLPAAHAAAFKIVANLPYA 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T W+ A P E + L+ Q+E +R A S +G +SV + Sbjct: 128 IAT----PWLDAVLGGPLPERMVLMLQQEAAQRYVAMPGSKSFGAISVFLQSAYEVAPGH 183 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT----LRQSLKRL 244 + FFP P V S ++H + P E +K + + F +RRK LR L Sbjct: 184 RVEASCFFPRPDVDSYLLHLVRRAEPFVFTPE-VKALIRSVFQQRRKQIGGLLRDRLPDH 242 Query: 245 GGENL--LHQAGIETNLRAENLSIE 267 G L L AG+ + R E + E Sbjct: 243 GASWLARLTAAGLSSLTRPEAIPTE 267 >gi|50842010|ref|YP_055237.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202] gi|289424169|ref|ZP_06425952.1| dimethyladenosine transferase [Propionibacterium acnes SK187] gi|289428439|ref|ZP_06430125.1| dimethyladenosine transferase [Propionibacterium acnes J165] gi|295130092|ref|YP_003580755.1| dimethyladenosine transferase [Propionibacterium acnes SK137] gi|62900512|sp|Q6AAD7|RSMA_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50839612|gb|AAT82279.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202] gi|289154866|gb|EFD03548.1| dimethyladenosine transferase [Propionibacterium acnes SK187] gi|289158411|gb|EFD06628.1| dimethyladenosine transferase [Propionibacterium acnes J165] gi|291376481|gb|ADE00336.1| dimethyladenosine transferase [Propionibacterium acnes SK137] gi|313765357|gb|EFS36721.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA1] gi|313772654|gb|EFS38620.1| dimethyladenosine transferase [Propionibacterium acnes HL074PA1] gi|313792880|gb|EFS40947.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA1] gi|313802667|gb|EFS43889.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA2] gi|313806680|gb|EFS45187.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA2] gi|313810877|gb|EFS48591.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA1] gi|313814612|gb|EFS52326.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA1] gi|313815236|gb|EFS52950.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA1] gi|313817223|gb|EFS54937.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA2] gi|313821715|gb|EFS59429.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA1] gi|313824394|gb|EFS62108.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA2] gi|313826751|gb|EFS64465.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA1] gi|313828541|gb|EFS66255.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA2] gi|313831996|gb|EFS69710.1| dimethyladenosine transferase [Propionibacterium acnes HL007PA1] gi|313834464|gb|EFS72178.1| dimethyladenosine transferase [Propionibacterium acnes HL056PA1] gi|313840303|gb|EFS78017.1| dimethyladenosine transferase [Propionibacterium acnes HL086PA1] gi|314916000|gb|EFS79831.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA4] gi|314916905|gb|EFS80736.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA1] gi|314921546|gb|EFS85377.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA3] gi|314926820|gb|EFS90651.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA3] gi|314931130|gb|EFS94961.1| dimethyladenosine transferase [Propionibacterium acnes HL067PA1] gi|314954813|gb|EFS99219.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA1] gi|314958979|gb|EFT03081.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA1] gi|314961274|gb|EFT05375.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA2] gi|314964298|gb|EFT08398.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA1] gi|314969398|gb|EFT13496.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA1] gi|314974466|gb|EFT18561.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA1] gi|314977344|gb|EFT21439.1| dimethyladenosine transferase [Propionibacterium acnes HL045PA1] gi|314980500|gb|EFT24594.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA2] gi|314985557|gb|EFT29649.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA1] gi|314987513|gb|EFT31604.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA2] gi|314989021|gb|EFT33112.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA3] gi|315078686|gb|EFT50717.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA2] gi|315081854|gb|EFT53830.1| dimethyladenosine transferase [Propionibacterium acnes HL078PA1] gi|315082653|gb|EFT54629.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA2] gi|315086362|gb|EFT58338.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA3] gi|315087610|gb|EFT59586.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA1] gi|315097535|gb|EFT69511.1| dimethyladenosine transferase [Propionibacterium acnes HL038PA1] gi|315099754|gb|EFT71730.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA2] gi|315101941|gb|EFT73917.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA1] gi|315106552|gb|EFT78528.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA1] gi|315110340|gb|EFT82316.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA2] gi|327331611|gb|EGE73350.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA2] gi|327333594|gb|EGE75314.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA3] gi|327445378|gb|EGE92032.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA2] gi|327446992|gb|EGE93646.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA1] gi|327449971|gb|EGE96625.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA2] gi|327454815|gb|EGF01470.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA3] gi|327455672|gb|EGF02327.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA2] gi|327456839|gb|EGF03494.1| dimethyladenosine transferase [Propionibacterium acnes HL092PA1] gi|328755871|gb|EGF69487.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA1] gi|328756654|gb|EGF70270.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA2] gi|328758625|gb|EGF72241.1| dimethyladenosine transferase [Propionibacterium acnes HL020PA1] gi|328761742|gb|EGF75257.1| dimethyladenosine transferase [Propionibacterium acnes HL099PA1] gi|332674932|gb|AEE71748.1| ribosomal RNA small subunit methyltransferase A [Propionibacterium acnes 266] Length = 298 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 26/286 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66 S++ I + P K GQNF+ D N +++I + G+ D VIE+G G G+LT LL Sbjct: 11 SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAAD--RVIEVGPGLGSLTLGLL 68 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122 GA +V+ IE D+ L ++ + P RLE++ DAL V K + P ++ Sbjct: 69 ETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTALV 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 125 ANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWYA 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI----PHLNPI-PCCLES-LKKITQEAFGKRRKT 236 +A + ++ P VF+P P V S ++ PH++ P S + ++ AF RRK Sbjct: 182 EAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRKM 241 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 242 LRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVVEALA 287 >gi|326797450|ref|YP_004315269.1| ribosomal RNA small subunit methyltransferase A [Sphingobacterium sp. 21] gi|326548214|gb|ADZ76599.1| Ribosomal RNA small subunit methyltransferase A [Sphingobacterium sp. 21] Length = 270 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 122/255 (47%), Gaps = 10/255 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D N K+I + G V+E+G G G L+ LL + +I+ D Sbjct: 17 KKHLGQHFLTDKNTAKRIVNALRPEKGFDKVLEVGPGMGILSDFLLEDKRFESWLIDLDI 76 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + LK RL I D L +DF F P+ II N PYNI +++LF + Sbjct: 77 ESVEFLKTKYPSLDKRL--IHGDFLLLDFASVF--PGPLAIIGNFPYNISSQILFKVLEH 132 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 L +FQKEV ER A+ YG LSV +F + F P PK Sbjct: 133 RHQVI---ELVGMFQKEVAERCAAKPGGKDYGILSVFLQAYYDIAYLFTVKAGAFNPPPK 189 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + ++ + C +KI + F +RRKTLR +L + + + +L Sbjct: 190 VLSGVIRLERNSIDRLACNENLFQKIVKAGFNQRRKTLRNALSVIADKARMPNHPF-LDL 248 Query: 260 RAENLSIEDFCRITN 274 RAE LS++DF +TN Sbjct: 249 RAERLSVDDFIELTN 263 >gi|82705284|ref|XP_726907.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL] gi|23482506|gb|EAA18472.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii] Length = 423 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 58/318 (18%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAES-------------------------- 42 ++KT+L + PK+ +GQN+L D NI+KK+ ++ Sbjct: 99 NIKTLLPSREFKPKRSLGQNYLKDENIIKKMVQAIELDASQFVLMKEKKKKILLKSKKDK 158 Query: 43 ----------------------SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 S +G +IE+G G G L++ L + + IE D Sbjct: 159 IKDETDEQNKLKINENNCKNMESLKNEGNGIIELGCGLGQLSKHLFK-KYKNMTAIEIDS 217 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139 + I IS P + I DD L+++++ N ++ + +I NLP+ I +++LF + Sbjct: 218 RALTI---ISRTMPG-FDFIHDDVLQINYKDLSINKNTKLSVIGNLPFYITSQILFCLLD 273 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + E + Q EVG+RI A+ N Y LS+L T ++F I + F+P P Sbjct: 274 ---FYKYIEQAVVTIQYEVGQRIIAKPNDKDYSILSILFSLYTHPYLLFKIPSNAFYPIP 330 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TN 258 KV + V+ I + C L LK+I + +F +RRK L+ SLKRL + + ++ Sbjct: 331 KVEAAVMKIIFKKHIFNCNLLFLKQILKHSFQQRRKKLKSSLKRLLNMYNIQNVPLPFSD 390 Query: 259 LRAENLSIEDFCRITNIL 276 LR + L E F +TNIL Sbjct: 391 LRPQQLYPEQFIELTNIL 408 >gi|15827037|ref|NP_301300.1| dimethyladenosine transferase [Mycobacterium leprae TN] gi|221229515|ref|YP_002502931.1| dimethyladenosine transferase [Mycobacterium leprae Br4923] gi|27151599|sp|Q9CD52|RSMA_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807875|sp|B8ZU59|RSMA_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13092584|emb|CAC29749.1| putative dimethyladenosine transferase [Mycobacterium leprae] gi|219932622|emb|CAR70334.1| putative dimethyladenosine transferase [Mycobacterium leprae Br4923] Length = 306 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 19/288 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ ++ + P+K +GQNF+ D N ++++ +S V+E+G G G+LT LL G Sbjct: 19 IRWLVKELECRPRKSLGQNFVHDANTVRRVVSTSRVNRSDFVLEVGPGFGSLTLALLDCG 78 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V IE D L ++H N RL + D L F + + P ++ANL Sbjct: 79 A-AVSAIEIDPVLAGRLPQTVAEHSNNEIHRLTVCNRDVLS--FRRGDLATEPTALVANL 135 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + + Sbjct: 136 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKDYGVPSVKLSFFGRVR 192 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-NPIP---CCLESLKKITQEAFGKRRKTLRQSL 241 +SP VF+P P+V S ++ + +P P + ++ AF +RRKT R + Sbjct: 193 RCGMVSPTVFWPIPRVYSGLVRVDRYATSPWPTDDAFRRQVFELVDIAFTQRRKTSRNAF 252 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 + G N L A I+ R E LSI+DF R+ D A+ Sbjct: 253 VKWAGSSNESANRLLAASIDPARRGETLSIDDFVRLLRRSDGRDDAAV 300 >gi|212278083|gb|ACJ23056.1| KsgA [Neisseria gonorrhoeae] Length = 265 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 131/262 (50%), Gaps = 11/262 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 D F ++ +KEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 121 DDVADMHFMLQKEVVERKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 180 Query: 199 PKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 181 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 240 Query: 257 TNLRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 241 PQDRAEHIAPEKYVALSNYLAD 262 >gi|270307774|ref|YP_003329832.1| dimethyladenosine transferase [Dehalococcoides sp. VS] gi|270153666|gb|ACZ61504.1| dimethyladenosine transferase [Dehalococcoides sp. VS] Length = 291 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 141/270 (52%), Gaps = 15/270 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELLE-RA 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +II D LK+ E+ + P +++ANLPY I Sbjct: 79 GQVIAVELDDKLVNALTEKFKAYPN-FKIIHSDILKISPEEILGQNIPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A+ P E + ++ QKEV + + A+ G L++ + ++ + Sbjct: 138 SAVLRQFLEAEIKP---ELMVVMVQKEVAKNMVAKTGD--MGLLTLSVRFYGNPALVATV 192 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRLGGEN 248 F+P P+V S ++ + I + ++ K+ + FG RRKTL +L + G + Sbjct: 193 PAGAFYPPPEVDSAIVKVVIPQTTIMDGVSAVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 249 ------LLHQAGIETNLRAENLSIEDFCRI 272 LL ++GI+ RAE LS+E++ R+ Sbjct: 253 KQDILLLLERSGIDPARRAETLSMEEWKRL 282 >gi|257062209|ref|YP_003140097.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802] gi|256592375|gb|ACV03262.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802] Length = 272 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L +I E++ V+EIG G G LT+ LL L + ++ +E D+ Sbjct: 4 PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFN 136 L S + N +++ D L +D E+F +++AN+PYNI + +L Sbjct: 63 DLCYRLAK-SFGNFNHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILEK 121 Query: 137 WISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + + P P +E + LL QKEV +RI A S YG LSV T + + + ++ Sbjct: 122 LLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSKA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249 F P PKV S VI P P + L ++ + F RRK L +LK + + L Sbjct: 182 FDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDRDHLTLL 241 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L Q I +RAE LS+E + +N+L Sbjct: 242 LDQLQINPQVRAEELSLEQWIMFSNLL 268 >gi|41407073|ref|NP_959909.1| dimethyladenosine transferase [Mycobacterium avium subsp. paratuberculosis K-10] gi|62900553|sp|Q741W2|RSMA_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|41395424|gb|AAS03292.1| KsgA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 318 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 19/283 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G LT LL G Sbjct: 22 IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGPLTLALLDRG 81 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L ++H + RL ++ D L + ++ P ++ANL Sbjct: 82 A-HVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL--AEPPTAVVANL 138 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + + Sbjct: 139 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGRVR 195 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPI---PCCLESLKKITQEAFGKRRKTLRQSL 241 +SP VF+P P+V S ++ + +P P + ++ AFG+RRKT R + Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFELVDIAFGQRRKTCRNAF 255 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G + L A I+ R E LSI+DF R+ D Sbjct: 256 VDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298 >gi|330818270|ref|YP_004361975.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3] gi|327370663|gb|AEA62019.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3] Length = 275 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 23/274 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI- 74 H +K GQNFL+DL ++ I + G ++EIG G G LT ++ A + Sbjct: 7 HQGHFARKRFGQNFLVDLGVIDSIVNAIRPERGERMVEIGPGLGALTGPVIERLATPELP 66 Query: 75 --VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130 +E D+ LK + RLE+ DAL DF +RII NLPYNI Sbjct: 67 LHAVELDRDLIGRLK---QRFGERLELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNIS 123 Query: 131 TRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + LLF+ + F E + + Q EV ER+ A+ S + RLSV+ +R + Sbjct: 124 SPLLFHLMD------FAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKL 177 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 D+ P F P PKV S ++ IP+ L + + L ++ AF +RRK LR +L Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPYAPHELAAVDVAV--LGEVVTAAFSQRRKMLRNTLGA 235 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ ++++ + ++ Sbjct: 236 YRDAIDFDALGFDLARRAEDVGVDEYVGLAQAVS 269 >gi|256810093|ref|YP_003127462.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86] gi|256793293|gb|ACV23962.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86] Length = 268 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ FL+D N + K E++ V+EIG G G LT+ L A+KV +IE D+ Sbjct: 4 PKKKLGQCFLIDKNFVNKAVEAANLTKDDVVLEIGLGKGILTEELAK-NAKKVYIIEIDK 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139 P + ++ N +EII DA+KVD FN +++ANLPY I + + F + Sbjct: 63 NLEPYANRLKEKY-NNIEIIWGDAVKVDLSNLDFN-----KVVANLPYQISSPITFKLLK 116 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ L++Q E +R+ A++ + YGRLSV R ++ + P+ F P P Sbjct: 117 KG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIIAKVPPNAFSPKP 171 Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 KV S ++ P+ N E + F R K++R++L Sbjct: 172 KVFSAIVKIKPNKNKYHIENEDFFDNFLRAIFQHRNKSVRRAL 214 >gi|17230721|ref|NP_487269.1| dimethyladenosine transferase [Nostoc sp. PCC 7120] gi|27151584|sp|Q8YS62|RSMA_NOSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|17132324|dbj|BAB74928.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC 7120] Length = 271 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 15/268 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L I +++ ++EIG G G LT+ LL + ++ +E D+ Sbjct: 4 PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLP-AVQSLVAVEIDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRL--- 133 +L + N L ++Q D L +D F P +++AN+PYNI + Sbjct: 63 DLCELLAKQLGKKENFL-LLQGDFLTIDLAANLGSFPKFQKPNKVVANIPYNITGPIIEK 121 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L IS PF +S+ LL QKEV ER+ A+ S +G LSV + + D+ Sbjct: 122 LLGTISNPNLEPF-DSIVLLIQKEVAERLYAKSGSRTFGALSVRVQYLADCEFICDVPAS 180 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ P IP + L+ + + FG +RK LR +L+ + + Sbjct: 181 AFHPPPKVDSAVVRLRPRQIEIPVNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQ 240 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL Q I RAE++S + + ++ N+L Sbjct: 241 LLEQLNINPQARAEDISTQQWVKLANLL 268 >gi|218295759|ref|ZP_03496555.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus Y51MC23] gi|218243918|gb|EED10445.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus Y51MC23] Length = 278 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 106/203 (52%), Gaps = 11/203 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ +L + + + GQNFL+ L +I E++ G V E+G G G LT+ L Sbjct: 10 AVRELLERHGLFADRRFGQNFLVSEAHLHRIVEAARPFTG-PVYEVGPGLGVLTRALAEA 68 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GA +V+ IEKD + P+L++ P RL + DAL +E+ S ++ANLPYN Sbjct: 69 GA-EVVAIEKDLRLKPVLEETLKGLPVRL--VFQDALAYPWEEVPEGSL---LVANLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+ + + L L QKEV ER+TA+ +P YG LS+ +A + Sbjct: 123 IATSLVTRLLKTGRF----ARLVFLVQKEVAERMTARPKTPAYGLLSLRVTHHAEAEKLL 178 Query: 189 DISPHVFFPSPKVTSTVIHFIPH 211 D+ P FFP PKV S ++ P Sbjct: 179 DLPPGAFFPPPKVVSALVRLHPQ 201 >gi|161523771|ref|YP_001578783.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] gi|189351468|ref|YP_001947096.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] gi|226729764|sp|A9AFE4|RSMA_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160341200|gb|ABX14286.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] gi|189335490|dbj|BAG44560.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] Length = 275 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 29/277 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--- 72 H +K GQNFL+D ++ I + G ++EIG G G LT+ L+ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPETP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 67 LHAVELDRDLIARLK---QRFGALLELHAGDALAFDFR---SLAAPGDAPSLRIVGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R + Sbjct: 121 NISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKL 177 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 D+ P F P PKV S ++ IP+ ++P+ L +I AF +RRK LR + Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGEIVTAAFSQRRKMLRNT 232 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L G + RAE++S+ ++ + L Sbjct: 233 LGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|17545237|ref|NP_518639.1| dimethyladenosine transferase [Ralstonia solanacearum GMI1000] gi|27151581|sp|Q8Y219|RSMA_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|17427528|emb|CAD14046.1| probable dimethyladenosine transferase (s-adenosylmethionine-6-n',n'-adenosyl(rrna) dimethyltransferase) (16s rrna dimethylase) (high level kasugamycin resistance protein ksga) (kasugamycin dimethyltransferase) [Ralstonia solanacearum GMI1000] Length = 281 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 125/261 (47%), Gaps = 15/261 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL+D ++ I + ++EIG G G LT L+ + +V+ +++D Sbjct: 15 RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139 ++ + + ++L + DAL DF +RI+ NLPYNI + LLF+ + Sbjct: 74 ----LVARLQRRFGDKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLFHLSAF 129 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 AD + QKEV +R+ A S + RLSV+ R ++ ++ P F P P Sbjct: 130 ADRV----RDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSFNPPP 185 Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 KV S V+ IP +P P + +L + AF +RRK LR +L L G Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFDALGF 245 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + RAE + + DF + N L Sbjct: 246 DLGRRAEEVPVADFVAVANAL 266 >gi|226227288|ref|YP_002761394.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27] gi|226090479|dbj|BAH38924.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27] Length = 303 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 16/264 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQ+FL D +L IA++ G + TVIEIG G G LT +L+ AR+VI IE D+ Sbjct: 27 PRKRFGQHFLKDTRVLSSIADALGDVRDRTVIEIGPGRGALTDLLVER-ARRVIAIEIDR 85 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + P+ +EI++ D L+ + P + N+PY I T ++F+ + Sbjct: 86 DLAAHLRARYADRPH-VEIVEADVLQTNLAALAG--EPYVLAGNVPYYITTPIIFHALVQ 142 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L QKEV +R+ A YG LSV ++ + P F P+P Sbjct: 143 ----PRPDVAVYLVQKEVADRMAAPPGDKIYGALSVNLQAVVGVELIRKVPPSAFNPAPA 198 Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQ 252 V S V+ +P + + P + AFG RRK L + ++ + ++ Sbjct: 199 VDSAVVRVVPRPDAVVEPELEARFRSFVLAAFGLRRKQLIRVVRTIASFDAERAGAVIAA 258 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 G+ R E L+ +F ++ L Sbjct: 259 CGLSPEARPETLTPAEFAKLVRAL 282 >gi|288930049|ref|ZP_06423889.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str. F0108] gi|288328619|gb|EFC67210.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str. F0108] Length = 267 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 29/269 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+FL DL I ++IA++ + + ++E+G G G LTQ L T R + V+E D Sbjct: 6 PKKHLGQHFLTDLGIAQRIADTVDACPELPILEVGPGMGVLTQYLATKN-RPLRVVEIDT 64 Query: 81 QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + FP+L + ++ +D L++D F P + N PY+I +++ Sbjct: 65 ESVAFLYNNFPLLAE---------NVLGEDFLRMDLASVFT-GQPFVLTGNYPYDISSQI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + P T + Q+EV RI +Q + YG LSVL +F + Sbjct: 115 FFKMLDNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDET 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL-----GGE 247 VF P PKV S VI + C E L K++ + F +RRK LR SL++L Sbjct: 172 VFNPPPKVKSAVIRMARNKVENLGCNEILFKRVVKTVFNQRRKMLRVSLRQLFAGMPASP 231 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 Q R E LS+ +F ++TN++ Sbjct: 232 EFYAQEMFTR--RPEQLSVAEFVQLTNMV 258 >gi|220908859|ref|YP_002484170.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425] gi|219865470|gb|ACL45809.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425] Length = 284 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 13/270 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI P+K GQ++L L++I ++ TV+EIG G G LT+ LL + ++ IE Sbjct: 3 KIRPRKQFGQHWLRSDRALQRILAAAELSVEDTVLEIGPGRGVLTRSLLD-RVKSLLAIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDD----ALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 D+ + L+ + N L ++Q + L+ + I P +++AN+PYNI + Sbjct: 62 IDRDLYSFLQSEFAGK-NNLRLVQGNFLELELEKLLTEETGIGFPNKVVANIPYNITGPI 120 Query: 134 LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L + A P +E + LL QKEV +R+ A NS YG LSV + + ++ + Sbjct: 121 LEKLLGTIAQPNPQPFELIVLLVQKEVADRLAAHPNSSAYGGLSVRVQYLAQCELICPVP 180 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN-- 248 F+P PKV S VI P+ P + L ++ + F RRK LR +LK + + Sbjct: 181 AGAFYPPPKVDSAVIRLRPYHPPTGATHPAFLDQLVRMGFATRRKMLRNNLKSVVERDRL 240 Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL Q + RAE+LS+ + ++N+L Sbjct: 241 SELLQQLDLNPQARAEDLSLSQWINLSNLL 270 >gi|145593340|ref|YP_001157637.1| dimethyladenosine transferase [Salinispora tropica CNB-440] gi|145302677|gb|ABP53259.1| dimethyladenosine transferase [Salinispora tropica CNB-440] Length = 289 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 15/270 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G V+E+G G G+LT LL Sbjct: 10 IRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTAQDVVLEVGPGLGSLTLALLPA- 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L + +++H +RL + + DAL+V + + +P ++ANL Sbjct: 69 AAHVHAVEIDPVLAAALPETAARHAGPAADRLSVHRADALRVTAGQLAD-PAPTALVANL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P L ++ QKEV +R+ A S YG SV W + Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSRVYGVPSVKLAWYARVH 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + P+VF+P P V S ++ F +P + E + + AF +RRKTLR +L Sbjct: 185 AAGKVPPNVFWPVPNVDSGLVAFTRRESPGVGVSRERIFAVVDAAFAQRRKTLRAALAGW 244 Query: 245 G-----GENLLHQAGIETNLRAENLSIEDF 269 +L AG++ R E L++E F Sbjct: 245 AGGADRAAAVLTAAGVDPGARGEALTVEQF 274 >gi|254388805|ref|ZP_05004037.1| dimethyladenosine transferase dimethyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294813100|ref|ZP_06771743.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC 27064] gi|326441601|ref|ZP_08216335.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Streptomyces clavuligerus ATCC 27064] gi|197702524|gb|EDY48336.1| dimethyladenosine transferase dimethyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294325699|gb|EFG07342.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC 27064] Length = 310 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 132/276 (47%), Gaps = 19/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 40 IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRADDVVVEVGPGLGSLTLALLE-A 98 Query: 70 ARKVIVIEKDQQF---FP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A V+ +E D P IL + + P R ++ DA+ V + P ++AN Sbjct: 99 ADSVVAVEIDDVLAGALPATILARMPERAP-RFSLVHSDAMLV---RELPGPPPTALVAN 154 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + D +P +L ++ Q EV +R+ A + YG SV W Sbjct: 155 LPYNVAVPVLLHML--DRFPTIERTL-VMVQAEVADRLAAAPGNKVYGVPSVKANWYADV 211 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKR 243 I +VF+P+P V S ++ + P ++ + + AF +RRKTLR +L Sbjct: 212 KRAGAIGRNVFWPAPNVDSGLVSLVRRDPPRTTATKAQVFAVVDAAFAQRRKTLRAALAG 271 Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 G L AGI R E+L++E+F RI Sbjct: 272 WAGSPAAAEAALVAAGISPQARGESLTVEEFARIAE 307 >gi|126179901|ref|YP_001047866.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1] gi|125862695|gb|ABN57884.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1] Length = 257 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 32/266 (12%) Query: 27 QNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 Q+FL+D ++KIA G +D G V+EIG G G LT+ LL A VI +E D Sbjct: 7 QHFLVDRRAVEKIA---GFVDVSGRRVLEIGPGEGILTRALLDRDA-DVIAVEIDPALVE 62 Query: 85 ILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ + RLEII+ DA KVD F + +ANLPY++ +++ F + Sbjct: 63 ELEIAFADEIGEGRLEIIRGDAKKVDIPPFEIV------VANLPYSVSSKITFRLLEIG- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 +E L++QKE R+ A +P+ GRLSV+ + ++ P F P P V Sbjct: 116 ----FEVAVLMYQKEFARRMVAPPGTPNVGRLSVMVQTYASVKPLLELGPGSFRPQPAVR 171 Query: 203 STVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL-- 259 S V+ PH P P + + + F RRKT+R+ L+ G++ I + Sbjct: 172 SWVVRITPHEPPYPIADRRVYADVVRVLFSHRRKTVRKGLR--SGKDAFSPEAIGRTIAS 229 Query: 260 --------RAENLSIEDFCRITNILT 277 R E+L++E+F I N ++ Sbjct: 230 LPDDLLQRRPEDLTLEEFALIANKMS 255 >gi|260577799|ref|ZP_05845733.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734] gi|258604026|gb|EEW17269.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734] Length = 311 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 138/295 (46%), Gaps = 33/295 (11%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + ++ + + P K +GQNF+ D N ++KI +++ V+EIG G G+LT LL Sbjct: 13 NEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALLE 72 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI--RII 122 GA V +E D + P + +I DA+ V + F + P+ ++ Sbjct: 73 TGA-SVTAVEIDPRLAEKLPATLEEQGAGEADAAVILKDAMAVTAQDFADAGRPLPTALV 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + + +P + + ++ Q EV +R+ A S YG SV G+ Sbjct: 132 ANLPYNVSVPVLLHML--EEFPSI-DRVLVMVQLEVADRLAAGPGSKIYGVPSVKAGFYG 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVI---------------HFIPHLNPIPCCLESLKK--- 224 T I +VF+P+PK+ S ++ L +E L++ Sbjct: 189 SVTRAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQLGADLGTEQLDVEQLRREVF 248 Query: 225 -ITQEAFGKRRKTLRQSLK-RLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273 + AF +RRKTLR +L GG E L +AGI+ LR E LS E F ++ Sbjct: 249 ALADAAFLQRRKTLRAALSGHFGGGQAAEEALRRAGIDPTLRGEKLSTEQFVQLA 303 >gi|167561606|ref|ZP_02354522.1| dimethyladenosine transferase [Burkholderia oklahomensis EO147] gi|167568841|ref|ZP_02361715.1| dimethyladenosine transferase [Burkholderia oklahomensis C6786] Length = 275 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 127/273 (46%), Gaps = 23/273 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ---MLLTLGARK 72 H +K GQNFL+D ++ I + G ++EIG G G LT L Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPTIARLATPDSP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130 + +E D+ LK + + LE+ DAL DF +RII NLPYNI Sbjct: 67 LHAVELDRDLIGRLK---QRFGDLLELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNIS 123 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + LLF+ +S + + Q EV ER+ A+ + + RLSV+ +R + D+ Sbjct: 124 SPLLFHLMS---FAHVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYTMDKLIDV 180 Query: 191 SPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 P F P PKV S ++ IPH L P+ + L ++ AF +RRK LR + LGG Sbjct: 181 PPESFQPPPKVDSAIVRMIPHAPHELQPVDPAV--LGEVVTAAFSQRRKMLRNT---LGG 235 Query: 247 ENLL---HQAGIETNLRAENLSIEDFCRITNIL 276 L G + RAE++ ++++ R+ + Sbjct: 236 YRDLVDFDALGFDLARRAEDVDVDEYVRVAQAV 268 >gi|328699748|ref|XP_003241033.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Acyrthosiphon pisum] Length = 221 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 14/196 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S++ ++ YK+ K + QNFL++ ++ +I S+GS V E+G GPGN+T+ ++ Sbjct: 14 SIRDLIKLYKLRAMKELSQNFLMEPRLISRIVRSAGSFKDCEVCEVGPGPGNITRSIIQN 73 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---------I 119 +V++IEKD++F P L+ ++ P LE+I D + + E+ FN + I Sbjct: 74 MPSRVLIIEKDKRFTPSLELLAESSPVPLELIFGDVMNFNLEQMFNEDNKMEWEDKCPQI 133 Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 +I NLP+N+ T L+ W+ A W +TL FQKEV ER+ A + RL Sbjct: 134 HLIGNLPFNVSTPLIIRWLKAISERKSAWRYGRVRMTLTFQKEVAERMAAPIMTRERSRL 193 Query: 175 SVLTGWRTKATMMFDI 190 SV+ + F+I Sbjct: 194 SVMCQNWCRVEHKFNI 209 >gi|312137230|ref|YP_004004567.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088] gi|311224949|gb|ADP77805.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088] Length = 283 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 106/198 (53%), Gaps = 13/198 (6%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 H K IL Y I + +GQNFL++ I KI + TV+EIG G G LT + + Sbjct: 9 HETKYILKKYNISLSRRLGQNFLINEYIRNKIINYANLNKKDTVLEIGPGIGTLT-IPMA 67 Query: 68 LGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A+KVI IEKD + ILKD I + +EII DALK+ F KF ++++NLP Sbjct: 68 KYAKKVIAIEKDCKMVEILKDRIHDLKIDNIEIINADALKIKFPKFN------KVVSNLP 121 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + + F ++ D + L++QKE +R+ A+ + +Y RLSV+ ++ + Sbjct: 122 YTISSPITFKLLNYD-----FNLGVLMYQKEFAQRLIAKPGTSNYSRLSVMMYFKANVEL 176 Query: 187 MFDISPHVFFPSPKVTST 204 + I P F P PKV S Sbjct: 177 LDIIPPKSFIPRPKVKSA 194 >gi|149199506|ref|ZP_01876541.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155] gi|149137441|gb|EDM25859.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155] Length = 272 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 14/277 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K L + L Y I P K GQNFL+D N+L + S G T++E+G G G LT+ + Sbjct: 2 KKAELLSTLEKYGIAPAKSRGQNFLIDNNLLDAMCRSMDIQAGETILEVGPGAGVLTREM 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L LG V +E D F I + +S +H + + + DA KVD+++ ++ R +A Sbjct: 62 LKLGG-IVHAVEFD---FAIQRYLSENLEH-EKFTLHKGDACKVDYKEILDLPREFRCLA 116 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + +F I ++ P E + L Q+E+ ER+ A ++ +YG L+V Sbjct: 117 NLPYAISS--IFIAIMSELESPPLE-MYFLLQREMAERLAADNSTKNYGSLTVRVQALYD 173 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ + P VFFP PKV S + N P P L+ L I + AF +RRK + +K Sbjct: 174 VNILRIVPPEVFFPPPKVQSAFVTLKLKENPPSPKVLKKLNSIVRAAFSQRRKVAFKLMK 233 Query: 243 RLGG---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E G++ RAE ++IE + ++ L Sbjct: 234 GTAGPKLEEAYETVGLDRKARAEQITIEQYIQLAETL 270 >gi|299067921|emb|CBJ39135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum CMR15] Length = 281 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 127/265 (47%), Gaps = 15/265 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL+D ++ I + ++EIG G G LT L+ + +V+ +++D Sbjct: 15 RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139 ++ + + ++L + DAL DF +RI+ NLPYNI + LLF+ + Sbjct: 74 ----LVARLQRRFGDKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLFHLSAF 129 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 AD + QKEV ER+ A S + RLSV+ R ++ ++ P F P P Sbjct: 130 ADRV----RDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSFNPPP 185 Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 KV S V+ IP +P P + +L + AF +RRK LR +L L G Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFDALGF 245 Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280 + RAE + + +F + N L ++ Sbjct: 246 DLGRRAEEVPVAEFVAVANALPADR 270 >gi|300692471|ref|YP_003753466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum PSI07] gi|299079531|emb|CBJ52209.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum PSI07] Length = 281 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 126/265 (47%), Gaps = 15/265 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +K GQNFL+D ++ I + ++EIG G G LT L+ + +V+ +++D Sbjct: 15 RKRFGQNFLVDEGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139 ++ + + ++L + DAL DF +RI+ NLPYNI + LLF+ + Sbjct: 74 ----LVVRLQRRFGDKLIVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLFHLSAF 129 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 AD + QKEV +R+ A S + RLSV+ R + D+ P F P P Sbjct: 130 ADRI----RDQHFMLQKEVVDRMVAVPGSKAFSRLSVMLQVRYYMEPVLDVPPGSFNPPP 185 Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 KV S V+ IP +P P + +L + AF +RRK LR +L L G Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFDALGF 245 Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280 + RAE + + DF + N L ++ Sbjct: 246 DLGRRAEEVPVADFVAVANALPADR 270 >gi|182438149|ref|YP_001825868.1| dimethyladenosine transferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778799|ref|ZP_08238064.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf. griseus XylebKG-1] gi|226732628|sp|B1VUF9|RSMA_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|178466665|dbj|BAG21185.1| putative dimethyladenosine transferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659132|gb|EGE43978.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf. griseus XylebKG-1] Length = 291 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ TV+E+G G G+LT LL Sbjct: 15 IRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDTVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V+ +E D L + ++ P +R ++ DA+ V +P ++ANL Sbjct: 74 ADRVVAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P +L ++ Q EV +R+ A+ + YG SV W Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQSEVADRLAARPGNKVYGVPSVKANWYADVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK- 242 I +VF+P+P V S ++ + PI + + AF +RRKTLR +L Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPIATTASRAEVFAVVDAAFAQRRKTLRAALSG 247 Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 E L AGI R E L++E+F I Sbjct: 248 WAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283 >gi|71894379|ref|YP_278487.1| dimethyladenosine transferase [Mycoplasma synoviae 53] gi|119365036|sp|Q4A645|RSMA_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71851167|gb|AAZ43776.1| dimethyladenosine transferase [Mycoplasma synoviae 53] Length = 259 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 132/267 (49%), Gaps = 32/267 (11%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++H KK +GQNFL D NI+ KI + +++ V+EIG G G+LT+ LL A+KV Sbjct: 1 MNHLDKNAKKSLGQNFLRDKNIINKIV-NVFNIENEKVLEIGPGQGDLTKELLK-KAKKV 58 Query: 74 IVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPY 127 + E D+ LK +I H E+ D L V +F+ ++ ++AN+PY Sbjct: 59 LAFEIDKSLIEHLKNEIKDLH---FELRDQDFLNVNLNDDEFKDYY-------VVANIPY 108 Query: 128 NIGTRLLFNWISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 I + +L + FW + + L+ QKEV +RI AQKNS +Y +LS+ + + Sbjct: 109 YITSDILLK-----IYRSFWNFKGIVLMVQKEVAQRIVAQKNSKNYSKLSISSQYLADVK 163 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + F ++ + F P+PKV S VI N LE + K F RRK L +L R Sbjct: 164 IEFIVNKNSFIPAPKVDSAVISLKFKDNIDKENLEKMLKFFLVCFANRRKKLTFTLNR-- 221 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272 + + L E L++ D RI Sbjct: 222 -----NFNSTKVKLAYEKLNLSDNARI 243 >gi|295395177|ref|ZP_06805385.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971939|gb|EFG47806.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC 49030] Length = 282 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 133/264 (50%), Gaps = 22/264 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K GQNF++D N ++ I E + G V+EIG G G+LT LL G V +E D+ Sbjct: 17 PTKTRGQNFVIDPNTVRMIVEEAQLTTGEQVVEIGPGLGSLTLGLLEAG-HPVTAVEIDR 75 Query: 81 QFFPIL-KDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 L + I P+ L +I DDAL V ++P ++ANLPYN+ +L ++ Sbjct: 76 LLASRLPRTIDEHAPDAHPLTLINDDALHVTELP----TTPTALVANLPYNVAVPVLMHF 131 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + +T+P S+ ++ Q EV R+ A S YG SV W T DI +VF+P Sbjct: 132 L--ETFPSL-NSVLVMVQAEVANRLAATPGSRVYGAPSVKAKWYGAVTRGSDIGKNVFWP 188 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKTLRQSLKRLGG-----EN 248 +P V S ++ + H P E L+ T AF +RRKTLRQ+L L G E Sbjct: 189 APNVGSGLVRIVKHAQ--PYGDEELRTATFDVVNAAFAQRRKTLRQALAGLLGSGADSEQ 246 Query: 249 LLHQAGIETNLRAENLSIEDFCRI 272 +L +GI+ R E L I+ F I Sbjct: 247 VLVDSGIDPKTRGEALDIDAFITI 270 >gi|32266673|ref|NP_860705.1| dimethyladenosine transferase [Helicobacter hepaticus ATCC 51449] gi|62900572|sp|Q7VGZ3|RSMA_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|32262724|gb|AAP77771.1| dimethyladenosine transferase (rRNA methylation) [Helicobacter hepaticus ATCC 51449] Length = 283 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 133/272 (48%), Gaps = 22/272 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D + L KI +S + I IEIG G G+LTQ LL + + +I E D Sbjct: 7 KKRFGQNFLQDSHFLHKIIQSIPDI-PIQCIEIGVGLGDLTQELLKIES--LIAYEVDLD 63 Query: 82 FFPIL-KDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +L K S+Q RL II D L + ++ + + ++++NLPY I T ++ + Sbjct: 64 LCSLLNKKFSNQIQSGRLNIIYKDILNLPSQQAWLHTHEYKVVSNLPYYIATHIILRLLR 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 F + ++ QKEV ++ A + LSVL KA M+F++ F P P Sbjct: 124 ----DRFCRAFLVMTQKEVAQKFCATTGQKEFCALSVLVESFGKAKMLFEVPKEAFSPMP 179 Query: 200 KVTST--VIHFIPHLNPIP----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 KVTS+ VIH N I C LES KI AF RKTL ++L ++ + LL + Sbjct: 180 KVTSSVFVIHKYSQQNQIEDSFLCDLESFLKI---AFYAPRKTLFKNLSQVFDKKLLEEV 236 Query: 254 ----GIETNLRAENLSIEDFCRITNILTDNQD 281 I++N RA + + F I L D Sbjct: 237 FENENIKSNARAHEVKTKSFHHILQFLKKRND 268 >gi|186685005|ref|YP_001868201.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102] gi|226732604|sp|B2J0A6|RSMA_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|186467457|gb|ACC83258.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102] Length = 286 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 29/281 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKI------AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I P+K Q++L L I ES S G ++EIG G G LT+ LL L + Sbjct: 2 IRPRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPL-VQS 60 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYN 128 +I +E D+ +L + N L ++Q D L +D + N P +++AN+PYN Sbjct: 61 LIAVEIDRDLCQLLSKQLGKTENFL-LLQGDFLTLDLPSYLVAFPNFQKPNKVVANIPYN 119 Query: 129 IGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 I ++ + A+ P ++S+ LL QKEV ER+ A+ S +G LSV + + + Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKTFGALSVRVQYLAECEL 179 Query: 187 MFDISPHVFFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + + F P+PKV S V+ IP LNP L+ + FG +RK LR + Sbjct: 180 ICTVPASAFHPAPKVDSAVVRLRPRKIEIPALNP-----RQLETFLKLGFGAKRKMLRNN 234 Query: 241 LK----RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L+ R +LL Q I RAE++S++ + + N L Sbjct: 235 LQSVIERDRLSHLLEQLKINPQARAEDISVQQWVILANELA 275 >gi|45358550|ref|NP_988107.1| dimethyladenosine transferase [Methanococcus maripaludis S2] gi|62900533|sp|Q6LYK4|RSMA_METMP RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|44921308|emb|CAF30543.1| dimethyladenosine transferase related protein (rRNA methylase) [Methanococcus maripaludis S2] Length = 267 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 14/221 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D N +KK + + V+E+G G G LT+ L + A+KV VIE D++ Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKI-AKKVYVIELDERL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+++ N +EII DALKVD + FN +I+ANLPY I + + F ++ D Sbjct: 64 KPFADEITAEFEN-VEIIWSDALKVDLKNLGFN-----KIVANLPYQISSPITFKFLEED 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E+ L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 S ++ E KK+ + F R +T++++L Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAVFQHRNRTIKRAL 213 >gi|160934055|ref|ZP_02081442.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753] gi|156866728|gb|EDO60100.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753] Length = 254 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 24/253 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 +AE G+ +G+ +EIG G G LT L A KV IE D++ P+L++ + N + Sbjct: 1 MAEECGAREGVCALEIGPGIGVLTYEL-ARRADKVAAIELDRRLLPVLEETLGEFSN-VT 58 Query: 99 IIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 +I D +K+D E+F + P+ + ANLPY I + ++ + + P +SLT++ Sbjct: 59 VISGDVMKLDLRQVIQEQFGD--KPVCLCANLPYYITSPVIMKVLE-EKLP--VDSLTVM 113 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 QKE +RI A+ S + G +S+ + + M+F +S F P P V S VI Sbjct: 114 VQKEAAQRICAEPGSRNVGAVSIAVRYYAQPEMLFQVSRGSFLPPPNVDSAVIRLKIRET 173 Query: 214 PIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET--------NLRAEN 263 P + + + AF +RRKTL SL G + Q +ET N RAE Sbjct: 174 PAVSVEDEAFFFQTVKAAFAQRRKTLANSLS--AGLAVSKQQALETLAACEIPPNARAEE 231 Query: 264 LSIEDFCRITNIL 276 L++E F R+++ L Sbjct: 232 LTMERFGRLSDAL 244 >gi|167835491|ref|ZP_02462374.1| dimethyladenosine transferase [Burkholderia thailandensis MSMB43] Length = 275 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 17/263 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RK 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDSP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIG 130 + +E D+ LK ++ LE+ DAL DF +RII NLPYNI Sbjct: 67 LHAVELDRDLIGRLK---ARFGELLELHAGDALAFDFGSLARPGDQPSLRIIGNLPYNIS 123 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + LLF+ ++ + P + Q EV ER+ A+ + + RLSV+ +R + D+ Sbjct: 124 SPLLFHLMA---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKLIDV 180 Query: 191 SPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P PKV S ++ IPH + +P S L ++ AF +RRK LR +L G + Sbjct: 181 PPESFQPPPKVDSAIVRMIPHAPHELPAVDPSVLGEVVTAAFSQRRKMLRNTLG--GYRD 238 Query: 249 LL--HQAGIETNLRAENLSIEDF 269 L+ G + RAE++ ++++ Sbjct: 239 LVDFDALGFDLARRAEDVGVDEY 261 >gi|72080979|ref|YP_288037.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448] Length = 250 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 126/260 (48%), Gaps = 17/260 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 MGQNFL D I +KI E+ L +IEIG G G LT LL A+ V E D+ P Sbjct: 1 MGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-RAKFVTCYEIDRNLIP 58 Query: 85 ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 IL + N+ L II +D L + E IIANLPY I +++LF + + Sbjct: 59 IL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFKIFA--NF 109 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 F + + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FFP PKV S Sbjct: 110 EKF-DKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPKVNS 168 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQAGIETNL 259 V+ F N +E T++ F +RKTL + L + E + + N+ Sbjct: 169 AVVLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNI 228 Query: 260 RAENLSIEDFCRITNILTDN 279 R + L + + R+ + +N Sbjct: 229 RPQQLDLVTYIRLADFYFNN 248 >gi|242398592|ref|YP_002994016.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM 739] gi|259494260|sp|C6A222|RSMA_THESM RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|242264985|gb|ACS89667.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM 739] Length = 273 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 37/283 (13%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +++S Y + P +GQNFL+ +++K+ E + + T++EIG G G LT L A Sbjct: 7 SLISKYNLKPNSDLGQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAK-RAG 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV IEKD + ILK + + +EI+Q DALK+ F +F ++++NLPY I + Sbjct: 66 KVYAIEKDSRIIEILK--KEYNWSNVEIMQGDALKIKFPEFN------KVVSNLPYQISS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F + D +E L++Q E +R+ A+ +Y RLSV+ + ++ I Sbjct: 118 PITFKLLKYD-----FERAVLIYQLEFAQRMVAKPGDKNYSRLSVMVQAKVNVDLVERIG 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F+P PKV S VI P P +E + + + F RRK ++LK + H Sbjct: 173 RGAFYPKPKVDSAVIVMEP--KPKDEQIELNENLVKALFQHRRKLASKALK-----DSYH 225 Query: 252 QAGI----------------ETNLRAENLSIEDFCRITNILTD 278 G+ +N R LSIED I L + Sbjct: 226 MLGLTREDFKKFKPIIERVPHSNKRVFQLSIEDIKDIEEFLRN 268 >gi|289432297|ref|YP_003462170.1| dimethyladenosine transferase [Dehalococcoides sp. GT] gi|288946017|gb|ADC73714.1| dimethyladenosine transferase [Dehalococcoides sp. GT] Length = 291 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 137/270 (50%), Gaps = 15/270 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +I D LK E+ P +++ANLPY I Sbjct: 79 GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + + ++ A P ES+ ++ QKEV + I A+ G L++ + +++ + Sbjct: 138 SAVFRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTG--DMGLLTLSVRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246 F+P P+V S ++ IP + E K+ + FG RRKTL +L + G Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRI 272 +LL+ AGI+ RAE LS+E++ ++ Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKL 282 >gi|307298762|ref|ZP_07578565.1| dimethyladenosine transferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915927|gb|EFN46311.1| dimethyladenosine transferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 265 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 22/256 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL + ++I ES T++EIG G G+LT +LL G R VI E D +F Sbjct: 12 KALGQNFLKSDRVSRRIVESVELNPSTTIVEIGVGSGSLTSILLEKGYR-VIGFEIDTRF 70 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138 + + + R E+ +D LK D + + +AN+PY I + R++F+ Sbjct: 71 SEGNRRLEGE---RCELRYEDFLKADLS---TLPDSVTYVANIPYYITSPIIERIMFDG- 123 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P ++ L+ QKE +R+TA + YG L+V ++ +F +S F P Sbjct: 124 ------PSFDRAVLMVQKEYADRLTATPRTKEYGILTVNVNTFSEVRELFQVSRKEFIPQ 177 Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAG 254 P+V S VI NP + +K + F +RRK L+ +LK + E LL Sbjct: 178 PEVDSMVIELSLLENPPIGEARRDQYRKFVRHCFSQRRKKLKNNLKSIVDLPEELLGSMA 237 Query: 255 IETNLRAENLSIEDFC 270 I ++RAE LS++DF Sbjct: 238 IGVDVRAEELSVDDFV 253 >gi|134045845|ref|YP_001097331.1| dimethyladenosine transferase [Methanococcus maripaludis C5] gi|166221675|sp|A4FY32|RSMA_METM5 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|132663470|gb|ABO35116.1| dimethyladenosine transferase [Methanococcus maripaludis C5] Length = 263 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 14/221 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D N +KK + + V+E+G G G LT+ L + A+KV VIE D++ Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKI-AKKVYVIELDERL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+S+ N +EII DALKVD + FN +I+ANLPY I + + F ++ D Sbjct: 64 KPFADEITSEFEN-VEIIWSDALKVDLKNLGFN-----KIVANLPYQISSPITFKFLDVD 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E+ L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 S ++ E KK+ + F R +T++++L Sbjct: 173 NSAIVKLTKREPKYFVKDEKFFKKVLKAMFQHRNRTIKRAL 213 >gi|254820388|ref|ZP_05225389.1| dimethyladenosine transferase [Mycobacterium intracellulare ATCC 13950] Length = 310 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 21/288 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL G Sbjct: 19 IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGIGRSDHVLEVGPGLGSLTLALLDRG 78 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L D ++H + RL ++ D L + ++ P ++ANL Sbjct: 79 A-PVTAVEIDPVLAERLPDTVAEHSHSEIQRLSVLNRDILTLRRDEL--DVQPTAVVANL 135 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ L + ++ P +T++ Q EV ER+ A+ YG SV + Sbjct: 136 PYNVAVPALLHLLAEF---PSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGTVR 192 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQE----AFGKRRKTLRQS 240 +SP VF+P P+V S ++ + +P P ++ ++ E AF +RRKT R + Sbjct: 193 RCGTVSPTVFWPIPRVYSGLVRIDRYATSPWPTA-DAFRRQVFELVDIAFAQRRKTCRNA 251 Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + L A I+ R E LSI+DF R+ D A Sbjct: 252 FLDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRSHSA 299 >gi|256084910|ref|XP_002578668.1| dimethyladenosine transferase [Schistosoma mansoni] gi|238664049|emb|CAZ34906.1| dimethyladenosine transferase, putative [Schistosoma mansoni] Length = 295 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 121/265 (45%), Gaps = 46/265 (17%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 SL+ I+ Y I +K + QNFLL + + + + +G+L G V+E+G GPG +T+ +L Sbjct: 25 SLREIIHVYGIRAQKQLSQNFLLQPSSINGLVKCAGNLRGAYVLEVGPGPGGITRAILQK 84 Query: 69 GARKVIVIEKDQQFFPILKDI---SSQHPNRLEIIQDDALKVDFEKFFNISS-------- 117 R V V+E D++F P L+++ + + +++I + D LK + E F ISS Sbjct: 85 APRHVAVVELDRRFIPGLQELRLAALEMGTQMDIYRQDILKFNCEGIFPISSMTGAGAWD 144 Query: 118 -----------------------------PIRIIANLPYNIGTRLLFNWI-----SADTW 143 + +I NLP+NI T L+ W+ W Sbjct: 145 ESPEVVNSNLVKSTSENQNETALEKVSSPRLCVIGNLPFNISTPLISQWLHDIAERRGIW 204 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 LTL FQKEV ER+ A RLSV++ M DI F P PKV Sbjct: 205 RYGRVPLTLTFQKEVAERLAADVWDEQRSRLSVMSQAYCDVKYMKDIPGTAFVPPPKVDV 264 Query: 204 TVIHFIPHLNP-IPCCLESLKKITQ 227 V+ IP P IP ++K+T+ Sbjct: 265 GVVRLIPLKQPLIPVPYPYVEKLTK 289 >gi|228995432|ref|ZP_04155102.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17] gi|229003046|ref|ZP_04160903.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4] gi|228758204|gb|EEM07392.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4] gi|228764293|gb|EEM13170.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17] Length = 258 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 20/244 (8%) Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD--- 108 IEIG G G LT+ L A+KV+ E DQ+ PIL + + + N + +I D LK D Sbjct: 17 IEIGPGIGALTEQLAK-RAKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDILKADVHE 74 Query: 109 -FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 F + F + ++ANLPY + T +LF + + P ++ QKEVG+R+ A+ Sbjct: 75 VFGEQFEKGQDVMVVANLPYYVTTPILFKLLE-EQLP--VRGFVVMMQKEVGDRLAAKPG 131 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKI 225 + YG LS+ + T+ + + VF P P V S VI + PI + ++ Sbjct: 132 TKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRPKPIVEVKDEKFFFEV 191 Query: 226 TQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +F +RRKTL +L + +L + GI+ R E LSIE+F ++N L Sbjct: 192 VRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFAALSNAL 251 Query: 277 TDNQ 280 ++ Sbjct: 252 VSHK 255 >gi|291298533|ref|YP_003509811.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM 44728] gi|290567753|gb|ADD40718.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM 44728] Length = 281 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 133/283 (46%), Gaps = 16/283 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ I + P K +GQNF++D N +++IAE++ VIE+G G G+ Sbjct: 1 MTELLGAADIRRIAEALTVRPAKALGQNFVIDGNTVRRIAEAAKLSPDDIVIEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNIS 116 LT LL A++V +E D + L + +L + DA+ V + F Sbjct: 61 LTLALLP-KAKRVHAVEIDARLASALTATVNSRAGDDAAKLRVHHADAMTVAEDGFDE-- 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P ++ANLPYN+ ++ + ++ + P + L ++ Q EV ER+TA+ + YG S+ Sbjct: 118 PPTALVANLPYNVAVPVVLHLLA--SLPSLRQGL-VMVQSEVAERLTAKPGTKIYGIPSL 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 W A + VF+P P V S ++ F P P + AF +RRKT Sbjct: 175 KLAWYASARRAGTVPRGVFWPVPNVDSGLVAF-ERREPPPGDRREVFAAVDAAFAQRRKT 233 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 LR +L G E +L A ++ R E L I F RI Sbjct: 234 LRIALSDWAGGPDRAEAILRAADVDPRTRGEALDITTFARIAR 276 >gi|228989249|ref|ZP_04149242.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442] gi|228770459|gb|EEM19030.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442] Length = 254 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 20/244 (8%) Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD--- 108 IEIG G G LT+ L A+KV+ E DQ+ PIL + + + N + +I D LK D Sbjct: 13 IEIGPGIGALTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDILKADVHE 70 Query: 109 -FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 F + F + ++ANLPY + T +LF + + P ++ QKEVG+R+ A+ Sbjct: 71 VFGEQFEKGQDVMVVANLPYYVTTPILFKLLE-EQLP--VRGFVVMMQKEVGDRLAAKPG 127 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKI 225 + YG LS+ + T+ + + VF P P V S VI + PI + ++ Sbjct: 128 TKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRPKPIVEVKDEKFFFEV 187 Query: 226 TQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +F +RRKTL +L + +L + GI+ R E LSIE+F ++N L Sbjct: 188 VRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFAALSNAL 247 Query: 277 TDNQ 280 ++ Sbjct: 248 VSHK 251 >gi|148273552|ref|YP_001223113.1| dimethyladenosine transferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831482|emb|CAN02443.1| putative dimethyladenosine transferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 304 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 132/274 (48%), Gaps = 25/274 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P K +GQNF++D N +++I + G V+E+G G G+LT LL GA V+ +E Sbjct: 33 VAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLLETGA-SVVAVEI 91 Query: 79 DQQF---FPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 D + PI ++ P+ L ++ +DAL+V P ++ANLPYN+ +L Sbjct: 92 DGRLAEQLPI--TVALYQPDAELTVVHEDALRVAELP----GDPTALVANLPYNVSVPVL 145 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + + P + ++ Q EVG RI A S YG SV W +S V Sbjct: 146 LHLLEHF---PAIRTGVVMVQAEVGHRIAAAPGSKVYGSPSVKAAWYGAWRTAGQVSRQV 202 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLK----KITQEAFGKRRKTLRQSLKR-LGGEN- 248 F+P P V S ++ F H P ESL+ KI AF +RRK LRQ+L LGG Sbjct: 203 FWPVPNVDSVLVAFERHAEPFAS--ESLRVRTFKIVDAAFQQRRKMLRQALAELLGGSEA 260 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 LL G+ R E LS+ D+ R+ D Sbjct: 261 ASALLEAGGVAPTSRGEELSVHDYLRVARAWADR 294 >gi|291287761|ref|YP_003504577.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809] gi|290884921|gb|ADD68621.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809] Length = 267 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 123/257 (47%), Gaps = 17/257 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+FL + IAES S + ++EIG G G LT +L GA V +E D+ Sbjct: 16 KKKFGQHFLTSKQFIDMIAESLASAECRQIVEIGPGCGVLTHAMLEKGA-SVTAVEIDE- 73 Query: 82 FFPILKDISSQHPNRLEIIQD-DALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNW 137 D++ P L I + + DF P I NLPYN+ +L + Sbjct: 74 ------DLAEFLPRYLFIYKGFKVINADFMLITEDQLPDGKIAFAGNLPYNVSVDILMHC 127 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + E +T +FQKEV +RI A+ N+ Y LSV+T + + + DIS F+P Sbjct: 128 VK---FFHKIEKMTFMFQKEVADRINAKPNNKEYTSLSVITSYFFEKKKLKDISGGQFWP 184 Query: 198 SPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGE-NLLHQAGI 255 + KV STV+ F P E + +F +RKTL +LK + +AG+ Sbjct: 185 NTKVRSTVLEFYPKERHFSAEKELRFLSFVKNSFMMKRKTLHNNLKSYPNHLEAMEKAGL 244 Query: 256 ETNLRAENLSIEDFCRI 272 N+R E + ++DF R+ Sbjct: 245 AANIRGEQMELKDFIRL 261 >gi|71894000|ref|YP_279446.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae J] Length = 250 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 17/260 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 MGQNFL D I +KI E+ L +IEIG G G LT LL A+ V E D+ P Sbjct: 1 MGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDRNLIP 58 Query: 85 ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 IL + N+ L II +D L + E IIANLPY I +++LF + + Sbjct: 59 IL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFKIFA--NF 109 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 F + + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FFP PK+ S Sbjct: 110 EKF-DKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFFPKPKINS 168 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQAGIETNL 259 V+ F N E T++ F +RKTL + L + E + + N+ Sbjct: 169 AVVFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNI 228 Query: 260 RAENLSIEDFCRITNILTDN 279 R + L + + R+ + +N Sbjct: 229 RPQQLDLVTYIRLADFYFNN 248 >gi|302865247|ref|YP_003833884.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC 27029] gi|302568106|gb|ADL44308.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC 27029] Length = 289 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 15/270 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+LT LL + Sbjct: 10 IRELAARLGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGSLTLALLPVA 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L + +++ RL + DAL+V + +P ++ANL Sbjct: 70 AH-VHAVELDPALAAALPETAARFAGTAAERLTVHPADALRVTADDLAG-PAPTALVANL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P L ++ QKEV +R+ A S YG SV W ++ Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWYARSR 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR-----Q 239 + P+VF+P P V S ++ F P P +++ + AF +RRKTLR Sbjct: 185 AAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRKTLRAALAGW 244 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDF 269 + L AG++ + R E+L++E F Sbjct: 245 AGGADRAAAALTAAGVDPSARGESLTVEQF 274 >gi|66475300|ref|XP_627466.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II] gi|32398681|emb|CAD98641.1| dimethyladenosine transferase, probable [Cryptosporidium parvum] gi|46228931|gb|EAK89780.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II] gi|323508725|dbj|BAJ77256.1| cgd6_930 [Cryptosporidium parvum] gi|323509991|dbj|BAJ77888.1| cgd6_930 [Cryptosporidium parvum] Length = 385 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 117/249 (46%), Gaps = 11/249 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N SH+ S +I K GQ+ L + IL KI ++ TV+EIG G GNLT Sbjct: 42 NSSHNKGGGSSFVNVILDKKKGQHLLKNTGILDKIILAADIKPTDTVLEIGPGTGNLTMR 101 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LL L ARKV+ + D + +K S N LE+ + DAL+ F F A Sbjct: 102 LLPL-ARKVVAFDIDPRMVAEVKKRSVNSGFNNLEVREGDALRSSFGDF------DVCTA 154 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + +F +S + L+FQ+E R+ A+ HY RLSV T +K Sbjct: 155 NLPYQISSPFVFKLLSLQNK---YRCAVLMFQEEFALRLLAEPGEKHYCRLSVNTKLFSK 211 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 T + ++P F P PKV S V+ F P P+ + + F +++KT+R + Sbjct: 212 VTRVCKVAPGSFNPPPKVNSMVVKFEPKKIPVSVNFREWDGLMRICFSRKKKTIRANFNN 271 Query: 244 LGGENLLHQ 252 N+L Sbjct: 272 SSVLNILEN 280 >gi|119511388|ref|ZP_01630500.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414] gi|119463933|gb|EAW44858.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414] Length = 275 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 32/284 (11%) Query: 19 IIPKKYMGQNFLLD---LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 I P+K Q++L L+ + K AE S D V+EIG G G LT+ LL L R ++ Sbjct: 2 IKPRKSFAQHWLKSEKALDAIIKAAECHQSDD--RVLEIGPGTGILTRRLLPL-VRSLVA 58 Query: 76 IEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNI 129 +E D F + K ++ Q ++Q D L +D F N P +++AN+PYNI Sbjct: 59 VEID---FDLCKQLAKQLGKKENFLLLQGDFLTLDLPSHLAPFPNFQQPNKVVANIPYNI 115 Query: 130 GTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 ++ + A+ P ++S+ LL QKEV +R+ A S +G LSV + + Sbjct: 116 TGPIIEKLLGTIANPNPEPFDSIVLLVQKEVADRLYAHPGSRTFGALSVRVQYLADCEFI 175 Query: 188 FDISPHVFFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + F+P PKV S V+ P LNP + + + F +RK LR +L Sbjct: 176 CTVPAGAFYPPPKVDSAVVRLRPRTIETPALNP-----RKFENLVKLGFSAKRKMLRNNL 230 Query: 242 KRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + + + LL Q I +RAE+LS++ + R+ N LT N + Sbjct: 231 QSVVERDRLTHLLEQLEINPQVRAEDLSVQQWVRLANQLTVNTE 274 >gi|297200276|ref|ZP_06917673.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] gi|197709390|gb|EDY53424.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] Length = 296 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N ++KI ++G D V+E+G G G+LT LL Sbjct: 15 IRELAAALGVRPTKQRGQNFVIDANTVRKIVRTAGVRDDDVVVEVGPGLGSLTLALLET- 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L I+++ P+R + ++ DA+ V +P ++ANL Sbjct: 74 ADRVTAVEIDDVLASALPATIAARLPDRADRFALVHSDAMHV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + DT+P +L ++ Q EV +R+ A S YG SV W + Sbjct: 131 PYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAAPPGSKVYGVPSVKANWYAEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I +VF+P+P V S ++ PI + + AF +RRKTLR Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVALTRRTEPIRTTASKREVFAVVDAAFAQRRKTLRAALAG 247 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 248 WAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283 >gi|307353999|ref|YP_003895050.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM 11571] gi|307157232|gb|ADN36612.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM 11571] Length = 257 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 136/273 (49%), Gaps = 45/273 (16%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL D + ++KIA S D TV+EIG G G LT+ LL GA KVI IE D + IL Sbjct: 7 QHFLTDPDAIRKIAHFSDIKDQ-TVLEIGPGKGALTKELLERGA-KVIAIEIDPKMIEIL 64 Query: 87 -----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +I S RL ++ +DA++ D+ F +I +IANLPY+ +++ F + Sbjct: 65 GSRFADEIDS---GRLNLLNEDAVRCDYPDF-DI-----VIANLPYSASSKITFRLLEHG 115 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L++QKE R+ A + + GRLSV+ K + ++ P F P P V Sbjct: 116 -----FKEAVLMYQKEFALRMMALPGTSNCGRLSVMVQTYAKVMPLLNLPPEAFSPPPAV 170 Query: 202 TSTVIHFI-------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 S V+ P +P E + +E F RRKTL++SLK +++ + Sbjct: 171 DSMVVRITMKEELTYPVDDP-----EFYSILVRELFSHRRKTLKKSLK--SSRSVIGEKR 223 Query: 255 IETNL----------RAENLSIEDFCRITNILT 277 E + RAE LS++DF I+NI T Sbjct: 224 YERIVSMLPDEMLKKRAEELSLKDFSNISNIAT 256 >gi|330836977|ref|YP_004411618.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta coccoides DSM 17374] gi|329748880|gb|AEC02236.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta coccoides DSM 17374] Length = 291 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 15/273 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++ +L + K GQNFLL I K+I ++ G+T+ EIG G G LT +LL Sbjct: 11 NAINNLLQEESLAMNKQFGQNFLLPQAIRKRIVDALEPSAGLTIWEIGPGLGALTVLLLE 70 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 ++ E D+ F IL++ + +++ D LK + + P RI NLPY Sbjct: 71 KKC-QLTAFEIDKGFCSILREKAFADETGFRLVEGDFLKTWEAVYGSGGVPHRICGNLPY 129 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+G+ + + P + + QKEV ER+T++ + L++L + ++ Sbjct: 130 NVGSVCIARLLERQCLP---DIMVFTVQKEVAERLTSRDGDKNRSTLTLLADIDYETRLL 186 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRKTLR------- 238 F I F+PSP VTS + P + L + + ++AF RRKT++ Sbjct: 187 FTIGGGAFYPSPDVTSAAVGMYRRATPLVDAALRPVYLSLVKDAFSHRRKTMKNNLLQGE 246 Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 +L + G + +L +G+ RAE LS E+ Sbjct: 247 IGNTLGKDGVDAILANSGVNPQSRAEALSFEEL 279 >gi|312130023|ref|YP_003997363.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132] gi|311906569|gb|ADQ17010.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132] Length = 255 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 12/264 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK++GQ+FL DL+ K+I E V+EIG G G LTQ L + ++E Sbjct: 3 KVKAKKHLGQHFLKDLSAAKRITELYQGPK--KVLEIGPGMGVLTQYLRERTDLDLYLVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++ L+ +L D L+++ + N II N PYNI +++ F Sbjct: 61 IDKESVAYLQHQYGYTDEKL--FDADFLQMNLSERLNTEGDFGIIGNFPYNISSQIFFKV 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEVG R+ ++ + YG LSVL F + P F P Sbjct: 119 LD---YRDQVKEVVGMVQKEVGVRLASKPGNKDYGILSVLLQAFYDIEYSFTVPPGAFDP 175 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + +++ + C + K + + AF +RRK L +LK + + A Sbjct: 176 PPKVDSGVIRLVRNMDKKLDCDYKKFKLVVKTAFNQRRKMLSNALKPVSAQQEFPYA--- 232 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 N RAE L F IT +L NQ Sbjct: 233 -NKRAEQLDYLQFAEITRVLFPNQ 255 >gi|150400809|ref|YP_001324575.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3] gi|166221674|sp|A6UTZ1|RSMA_META3 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|150013512|gb|ABR55963.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3] Length = 271 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 13/194 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D NI+KK ++ V+EIG G G LT+ L +KVIVIE D++ Sbjct: 5 KKLGQCFLKDKNIVKKAINAANINKNDIVLEIGLGKGILTKELAK-QCKKVIVIELDKKL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 +DI ++PN +EII +DALKV+ ++ FN +++ANLPY I + + F + D Sbjct: 64 EIFWEDIIKEYPN-VEIIWNDALKVNLKELGFN-----KVVANLPYQISSPITFKLLDCD 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E L++Q E +R+ A + Y RLSV +R + +SP F P PKV Sbjct: 118 -----FEVAVLMYQYEFAKRMGAPSGTKEYSRLSVSVQYRAVVDYVCKVSPSAFSPKPKV 172 Query: 202 TSTVIHFIPHLNPI 215 S ++ PI Sbjct: 173 DSAIVKITKKNEPI 186 >gi|116624617|ref|YP_826773.1| dimethyladenosine transferase [Candidatus Solibacter usitatus Ellin6076] gi|116227779|gb|ABJ86488.1| dimethyladenosine transferase [Candidatus Solibacter usitatus Ellin6076] Length = 247 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 125/257 (48%), Gaps = 20/257 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P+K +GQ+FL + ++L +IA + VIEIG G G LT+ LL R VI IE D Sbjct: 1 MPQK-LGQHFLSNGSVLDRIALAVCPEGEELVIEIGPGKGALTEKLLQRSGR-VIAIELD 58 Query: 80 QQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 P+L + Q +RL++I D L D ++ P+ I NLPY I + +L Sbjct: 59 ----PVLVEYLRQKFEGESRLQVIHADVLHTDLAQW----GPVPIAGNLPYYITSPILER 110 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + A L QKEV R+ A YG L++ T ++F++ P F Sbjct: 111 SVRAGA-----PRTVFLIQKEVAHRLVAHPGQRDYGYLTLQTALFADTKLLFEVKPGAFK 165 Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S V+ PH + K +F ++RKTLR +L + G++L+ A Sbjct: 166 PPPKVDSAVVLLTPHGRDYGITDRDKFLKFLSHSFRQKRKTLRNNLFAVYGKDLI-DAWP 224 Query: 256 ETNLRAENLSIEDFCRI 272 E LRAE + +E F + Sbjct: 225 EAGLRAEQIPMEKFVEM 241 >gi|308234963|ref|ZP_07665700.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14018] gi|311113998|ref|YP_003985219.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019] gi|310945492|gb|ADP38196.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019] Length = 296 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 139/277 (50%), Gaps = 24/277 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +KKI +S V+E+G G G+LT +L Sbjct: 21 AADIRRIAAEEGITPTKKFGQNFVIDPGTVKKIVTASKINSNDFVMEVGPGLGSLTLAIL 80 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLE---IIQDDALKVDFEKFFNISSP- 118 GA + +E D P+ K + S PN LE +I DAL+++ + N+++ Sbjct: 81 QAGA-NLTAVEIDP---PLAKRLPSTVKEFMPNALERFNVILKDALELNAQDVPNLANAQ 136 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRL 174 ++ANLPYN+ T ++ + + +LT ++ QKEV +R+ AQ + YG Sbjct: 137 HFTLVANLPYNVATPIILTLLEK------FNNLTSFLVMVQKEVADRLCAQPGTKTYGTP 190 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGK 232 SV W ++ I +VF+P+P V S +++F + + E + KI AF + Sbjct: 191 SVKLAWYGESQKAGLIGRNVFWPAPNVDSALVYFERNNEIREDEQEREKVFKIIDAAFQQ 250 Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 RRKTL +LK + AGI+ R E L+ +F Sbjct: 251 RRKTLHSALKGIISNESYDIAGIDPTRRGETLTCAEF 287 >gi|221211273|ref|ZP_03584252.1| dimethyladenosine transferase [Burkholderia multivorans CGD1] gi|221168634|gb|EEE01102.1| dimethyladenosine transferase [Burkholderia multivorans CGD1] Length = 305 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 131/280 (46%), Gaps = 29/280 (10%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ H +K GQNFL+D ++ I + G ++EIG G G LT+ L+ Sbjct: 29 QSMSNSRQHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIA 88 Query: 68 LGARK---VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119 A + +E D+ LK + LE+ DAL DF ++++P + Sbjct: 89 RLATPETPLHAVELDRDLIARLK---QRFGALLELHAGDALAFDFR---SLAAPGDAPSL 142 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI+ NLPYNI + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ Sbjct: 143 RIVGNLPYNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQ 199 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGK 232 +R + D+ P F P PKV S ++ IP+ ++P+ L +I AF + Sbjct: 200 YRYVMDKLIDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGEIVTAAFSQ 254 Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 RRK LR +L G + RAE++S+ ++ + Sbjct: 255 RRKMLRNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGV 294 >gi|330752527|emb|CBL87475.1| dimethyladenosine transferase [uncultured Sphingobacteria bacterium] Length = 260 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 134/262 (51%), Gaps = 22/262 (8%) Query: 23 KYMGQNFLLDLNILKKI-AESSGSLDGITV---IEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+FL+D +L+ I A G++V IEIG G G LTQ + +E Sbjct: 9 KAFGQHFLVDQGVLESIVAAIQKEEQGVSVDHLIEIGPGDGALTQFFV--DQPNFSALEI 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQ-DDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + ++P E I D L+ + EKF P+ + N PYNI ++++F Sbjct: 67 DSRWH---RRLVERYPASEEKIHLADVLRTNLLEKF---EPPMAVFGNFPYNISSQIVFK 120 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P W + +FQKEV R+ A+ S YG SVLT + ++FDI+ F Sbjct: 121 ILDNREHVP-W--VVGMFQKEVAYRLAAKHGSKVYGVTSVLTQAYYEVDILFDIASSSFD 177 Query: 197 PSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S+V+ + +P C +L+ + + AFG+RRK LR SLK L ++ H+ + Sbjct: 178 PPPKVESSVLVMRRYRTDMPNCTYGALRHVVKTAFGQRRKMLRNSLKFL---DIAHREEL 234 Query: 256 ETNLRAENLSIEDFCRITNILT 277 T +R E L +E F + + + Sbjct: 235 LT-MRPEQLPLETFIELAELYS 255 >gi|269219262|ref|ZP_06163116.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211409|gb|EEZ77749.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 350 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 143/341 (41%), Gaps = 82/341 (24%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M SH ++ + S I P K +GQNF+ D +++I +G G V+E+G G G+LT Sbjct: 1 MLGASH-IRELASTLGIRPTKTLGQNFVHDAGTVRRIVREAGVRPGDVVLEVGPGLGSLT 59 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDAL------------- 105 LL GA V +E D L+ ++++ P RL + DA+ Sbjct: 60 LALLEAGA-AVCAVEIDPVLAGALESTVAARMPEAVERLAVANLDAMDVKAPSNLPIPRL 118 Query: 106 ------------------------KVDF--------------EKFF----NISSPIRIIA 123 VDF E+F N++ P R++A Sbjct: 119 LRSEEGRAHGRAESAPETAELEPGSVDFAGETARTGRLPEKPERFVASTRNLAEPSRLVA 178 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ + + A P ++ T++ Q EV +R+ A S YG S W + Sbjct: 179 NLPYNVAVPIFLGLLEAL---PSIQAATVMVQAEVADRLAASPGSRTYGVPSAKASWYGE 235 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPC-----------CLESLKKITQEAF 230 A IS +VF+P P V S +++F H L +P E + + AF Sbjct: 236 AARGAKISRNVFWPIPNVDSALVNFKRHGALPWLPADVAGRGAFADVAREDVFAVIDAAF 295 Query: 231 GKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSI 266 +RRKTLR +L G E+LL AGI+ R E L I Sbjct: 296 AQRRKTLRAALATWAGSAARAEDLLVFAGIDPKARGEQLGI 336 >gi|119485101|ref|ZP_01619486.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106] gi|119457329|gb|EAW38454.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106] Length = 273 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 13/268 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L +I ++ ++EIG G G LT+ LLTL A+ V+ +E D+ Sbjct: 4 PRKQFAQHWLRSPTALNQIVNAAQLSTDDHLLEIGPGTGVLTERLLTL-AQTVLAVEIDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFN 136 L + N L ++Q D L + E + N +P +++AN+PYNI +L Sbjct: 63 DLCKKLVPKFGKRDNFL-LLQGDILTLRLEDYLQDFPNFQNPNKVVANIPYNITGPILEK 121 Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + A P ++ + LL QKEV +R+ A S +G LSV + K + D+ Sbjct: 122 LLGNIAQPNPQPYDLMVLLVQKEVAQRLCAGPGSRTFGALSVRVQYLAKCEFICDVPSKA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249 F+P PKV S V+ P P + L+ + F +RK LR +L+ + + + Sbjct: 182 FYPPPKVDSAVVRLRPRCIEYPAESPKHLEMAVKLGFASKRKMLRNNLQSVIDRDQLTQI 241 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L Q + RAE+LS+E + ++N L Sbjct: 242 LEQLEVNPQARAEDLSVEQWVSLSNRLV 269 >gi|108803734|ref|YP_643671.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941] gi|118600896|sp|Q1AXL9|RSMA_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|108764977|gb|ABG03859.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941] Length = 262 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 119/253 (47%), Gaps = 13/253 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ+FL D N + +A +G + V+EIG G G LT L A V +E D Sbjct: 12 PKKRLGQHFLKDANTARIVA--AGLTERDVVLEIGPGRGFLTAFLAER-AGLVHAVEIDP 68 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 P L+ N + I + DAL+ D+ P R+ ANLPYNI + L+ + Sbjct: 69 DVLPELRRAVGARGN-VRIHEADALRFDYGALS--PPPNRLAANLPYNIASPLVLRLLEE 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P E + + Q EV R+TA+ S YG +VL ++ + +SP VF P P+ Sbjct: 126 V---PSLERMRFMVQLEVALRMTARPGSKDYGAYAVLIQLLSRPEVAHRVSPRVFDPPPR 182 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLHQAGIET 257 V S V+ + P +K++ AF RRK L +L R E L G Sbjct: 183 VRSAVVELERRRD-APEDYRGVKELVAAAFRSRRKRLPNNLPGPLRERAEEALAGLGHGP 241 Query: 258 NLRAENLSIEDFC 270 + RAE LS EDF Sbjct: 242 DARAEELSPEDFV 254 >gi|42573814|ref|NP_975003.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|10177517|dbj|BAB10912.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana] gi|332010821|gb|AED98204.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] Length = 380 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 104/217 (47%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL I SS TV+EIG G GNLT LL A+ V+ +E D++ Sbjct: 65 KSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVELDKRM 123 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ S H ++L IIQ D LK DF F ++AN+PYNI + L+ + Sbjct: 124 VEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSPLVAKLVYG 177 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S TLL QKE R+ A + RL+V + D+S F P PK Sbjct: 178 SNT---FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPK 234 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+VI P ++ T+ FGK+ KTL Sbjct: 235 VDSSVIRITPKEIIPDVNVQEWLAFTRTCFGKKNKTL 271 >gi|116754303|ref|YP_843421.1| dimethyladenosine transferase [Methanosaeta thermophila PT] gi|116665754|gb|ABK14781.1| dimethyladenosine transferase [Methanosaeta thermophila PT] Length = 249 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 133/257 (51%), Gaps = 18/257 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+FL D I ++IA + ++EIG G G+LT+ L R V IE D + + Sbjct: 4 GQHFLTDRGIAERIAGYAEISPSDRILEIGPGKGSLTEFLAARAGR-VYAIEADPE---L 59 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + + PN +E+IQ DAL+VD ++ ++++NLPY+I T++ + P Sbjct: 60 ARYVEESFPN-VEVIQGDALRVDLPEYN------KVVSNLPYHISTKITLRLLRN----P 108 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 F + + L++Q+E ER+ A S YGRLSV + ++ + F P P V+S+V Sbjct: 109 F-DLMVLMYQREFVERMLASPGSREYGRLSVNVSYYADVEVLETVPRSAFRPMPHVSSSV 167 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAEN 263 + P + I+++ F KRRK ++ +L +G + +L + R E+ Sbjct: 168 VRLRPRRDRELVDELIFSSISRDLFTKRRKKVKNALASIGVADDVMLDLDPSILDARPED 227 Query: 264 LSIEDFCRITNILTDNQ 280 L +++F +I ++++++ Sbjct: 228 LGVDEFVQIARVVSEHR 244 >gi|219851214|ref|YP_002465646.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c] gi|219545473|gb|ACL15923.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c] Length = 262 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 130/270 (48%), Gaps = 28/270 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D + +I E +G +DG +V+EIG G G LT+ LL GA V IE D+ L Sbjct: 7 QHFLVDQRAIDRIIECAG-VDGKSVLEIGPGEGVLTRALLDAGA-TVSAIEVDRTLIAHL 64 Query: 87 KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 D + L +I+ DA + F F + +ANLPY+I + + F + D Sbjct: 65 TDRFVDEIRSGFLTLIEGDAARCPFPPFEVM------VANLPYSISSPITFRLLDTD--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + S L++Q+E R+ A + GRLSV+ F +SP F P P V S Sbjct: 116 --FSSAVLMYQREFAARMAAPVGTSGCGRLSVMVQTYALVEECFTLSPFSFNPPPAVDSM 173 Query: 205 VIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AGIETNL- 259 V+ P+ P S+ + + F +RRKT+R LK GG + + AG+ L Sbjct: 174 VVRIRPYGPIFPITDRSVYAAVVRILFSQRRKTVRNGLK--GGIGIYGKPAIAGVIEALP 231 Query: 260 ------RAENLSIEDFCRITNILTDNQDIA 283 R + L +ED+ I N++++ ++ Sbjct: 232 EEILGARPQTLYLEDYATIANLVSERSGLS 261 >gi|221200091|ref|ZP_03573134.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M] gi|221206756|ref|ZP_03579768.1| dimethyladenosine transferase [Burkholderia multivorans CGD2] gi|221173411|gb|EEE05846.1| dimethyladenosine transferase [Burkholderia multivorans CGD2] gi|221180330|gb|EEE12734.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M] Length = 275 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 29/272 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--- 72 H +K GQNFL+D ++ I + G ++EIG G G LT+ L+ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPETP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127 + +E D+ LK + LE+ DAL DF ++++P +RI+ NLPY Sbjct: 67 LHAVELDRDLIARLK---QRFGALLELHAGDALAFDFR---SLAAPGDAPSLRIVGNLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R + Sbjct: 121 NISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKL 177 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 D+ P F P PKV S ++ IP+ ++P+ L +I AF +RRK LR + Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGEIVTAAFSQRRKMLRNT 232 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 L G + RAE++S+ ++ + Sbjct: 233 LGDYRETIDFDALGFDLARRAEDVSVAEYVGV 264 >gi|83719203|ref|YP_441135.1| dimethyladenosine transferase [Burkholderia thailandensis E264] gi|167579886|ref|ZP_02372760.1| dimethyladenosine transferase [Burkholderia thailandensis TXDOH] gi|167617960|ref|ZP_02386591.1| dimethyladenosine transferase [Burkholderia thailandensis Bt4] gi|257140203|ref|ZP_05588465.1| dimethyladenosine transferase [Burkholderia thailandensis E264] gi|119365011|sp|Q2T114|RSMA_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83653028|gb|ABC37091.1| dimethyladenosine transferase [Burkholderia thailandensis E264] Length = 275 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 19/264 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RK 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 7 HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDSP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130 + +E D+ LK + LE+ + DAL DF +RII NLPYNI Sbjct: 67 LHAVELDRDLIGRLK---QRFGELLELHEGDALAFDFGSLALPGEKPSLRIIGNLPYNIS 123 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D+ Sbjct: 124 SPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDV 180 Query: 191 SPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P PKV S ++ IPH + +P + L ++ AF +RRK LR + LGG Sbjct: 181 PPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNT---LGGYR 237 Query: 249 LL---HQAGIETNLRAENLSIEDF 269 L G + RAE++ ++++ Sbjct: 238 DLVDFDALGFDLARRAEDVGVDEY 261 >gi|86152390|ref|ZP_01070600.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 260.94] gi|86154129|ref|ZP_01072328.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|157415933|ref|YP_001483189.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81116] gi|315125095|ref|YP_004067099.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840687|gb|EAQ57939.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85842369|gb|EAQ59585.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|157386897|gb|ABV53212.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81116] gi|307748571|gb|ADN91841.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni M1] gi|315018817|gb|ADT66910.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931321|gb|EFV10290.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 327] Length = 266 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ Q+E+ E+ A++ + + L VL+ + M+FD+ P F P Sbjct: 119 EDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKMLFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255 PKV S V+ I + C +E+ K ++ F RK L +LK + L L G+ Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + N+R + ++ + +I + L D Sbjct: 235 KENIRPHEICVDSYLKIYDKLKD 257 >gi|126657589|ref|ZP_01728744.1| dimethyladenosine transferase [Cyanothece sp. CCY0110] gi|126621045|gb|EAZ91759.1| dimethyladenosine transferase [Cyanothece sp. CCY0110] Length = 270 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 138/275 (50%), Gaps = 33/275 (12%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L++I +++ + ++EIG G G LT+ LL L + +I +E D Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VQSLIAVELDW 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANLPYNIGT-- 131 L N L ++Q D LK+D F KF I+ +++AN+PYNI + Sbjct: 63 DLCKKLVKSLGNEDNFL-LLQGDILKLDIATEAEQFPKFLPIN---KVVANIPYNITSPI 118 Query: 132 --RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 +LL N S + PP+ + + LL QKEV +RI A S +YG LS+ + + D Sbjct: 119 LEKLLGNIASPEN-PPY-DLIVLLIQKEVAQRIVASPGSKNYGALSIKMQYLADCNYICD 176 Query: 190 ISPHVFFPSPKVTSTVIHFIPH------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + F+P PKV S VI F P +NP + L+ + F RRK LR +L+ Sbjct: 177 VPKKSFYPPPKVDSAVITFRPRPLLNSAINP-----KQLETLINLGFSSRRKMLRNNLQS 231 Query: 244 LGGENLLHQAGIETNL----RAENLSIEDFCRITN 274 L +LL + E +L RAENL + + ++N Sbjct: 232 LIDRDLLTKFLTEIDLNEQVRAENLDLNQWIALSN 266 >gi|167751829|ref|ZP_02423956.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216] gi|167660070|gb|EDS04200.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216] Length = 349 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 128/271 (47%), Gaps = 22/271 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ KK +GQ+FL+DLNI +KI +S G S V+E+G G G LT+ LL Sbjct: 87 EVRAKKALGQHFLVDLNIARKICDSLGGGTSEKPCPVLEVGCGMGVLTRFLLKRTDVVTY 146 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D + L + RL ++ D LK+D F +R+I N PYNI +++ Sbjct: 147 GAEIDSESVAYLHAHYPEFTPRL--MEGDFLKMDLRTLF--PEGLRVIGNFPYNISSQIF 202 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + P + QKEV R+ S YG LSVL +F ++ V Sbjct: 203 FKVLENRDLIP---ECVGMIQKEVAVRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETV 259 Query: 195 FFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S V+ H N + C ++ + +FG+RRK LR SL+ G+ Sbjct: 260 FNPPPKVKSAVVRL--HRNGVDRLDCDERLFVRVVKASFGQRRKMLRNSLRAAFGDF--- 314 Query: 252 QAGIETNL---RAENLSIEDFCRITNILTDN 279 G+E RAE LS+ DF +T + ++ Sbjct: 315 -GGVEHPFFTQRAEQLSVADFVELTRWVEEH 344 >gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor] Length = 343 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 22/286 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 61 TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQA 120 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119 GA V +EKD+ ++KD +L++I++D K EK+ Sbjct: 121 GA-TVFAVEKDKHMATLVKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLA 178 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178 ++++NLP+N+ + ++ + + + L+ Q E R+ A P Y ++V Sbjct: 179 KVVSNLPFNVSSEVVKLLLPMGD---VFSVVVLMLQDETAVRLADASIQIPEYRPINVFV 235 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRK 235 + +K F + FFP PKV VI F + + P +S + AF +RK Sbjct: 236 NFYSKPEYKFRVDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 295 Query: 236 TLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR+SL+ L E L G+ R +L ++DF R+ N LT Sbjct: 296 MLRKSLQHLCSSSEIEAALDNIGLPVTARPSDLILDDFVRLHNHLT 341 >gi|218962077|ref|YP_001741852.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Candidatus Cloacamonas acidaminovorans] gi|167730734|emb|CAO81646.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Candidatus Cloacamonas acidaminovorans] Length = 267 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 25/268 (9%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL D +I +KI +V EIG G G LT ++ ++ E D++ Sbjct: 12 KALGQNFLTDKSIAEKIVALGELQPEDSVWEIGPGTGILTDEIIKNNV-QLRAFELDRRL 70 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISAD 141 + K +S+++ NR+ + Q D L+VD+ +P+++IAN+PY I + LL + Sbjct: 71 Y---KYLSARYENRIILEQTDILQVDWNSLIRKDGTPLKLIANIPYQITSPLL---ALLE 124 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV------F 195 + F+ + L+ QKEV ER++A+ + +Y L++ + ++FDIS + F Sbjct: 125 EYSRFFSRIVLMVQKEVAERLSAKPGNKNYAPLTI------RLRLVFDISSKIQVSREKF 178 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250 P PKV S VI +P N P+ E K+ AF RRKTL +L + G E L Sbjct: 179 SPMPKVDSAVILLLPRENKPVIKHPEHFHKLLHAAFVHRRKTLANNLIPVLGKEKTEELA 238 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTD 278 + I+ R E L+ EDF +++ L D Sbjct: 239 KLSHIDFGKRGEELAEEDFILLSDCLAD 266 >gi|301064596|ref|ZP_07204992.1| dimethyladenosine transferase [delta proteobacterium NaphS2] gi|300441344|gb|EFK05713.1| dimethyladenosine transferase [delta proteobacterium NaphS2] Length = 282 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 129/270 (47%), Gaps = 21/270 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K +GQNFL+D I KI S TV+EIG G G LT + L + ++ +EKD Sbjct: 15 PNKRLGQNFLVDPGISVKIVSLSRFTPEDTVLEIGPGKGALT-IPLAARVKHILAVEKDG 73 Query: 81 QFFPILKD-ISSQHPNRLEIIQDDALKVDF---EKFFNISSPIRIIANLPYNIGTRLLFN 136 + L + + N + ++ D LK+D+ + +F P+ I NLPYNI + LL Sbjct: 74 RLADWLDNRLKMAGINNVTLLHGDILKLDWLDLKSYFPGRMPV--IGNLPYNISSPLLEK 131 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 W L+FQKEV R+TA S YG LS+L + + + FF Sbjct: 132 MCEKPQW---IAQAILMFQKEVARRLTAVTGSKAYGALSLLVQYHAEVLSRLTVLKGSFF 188 Query: 197 PSPKVTSTVIHFIPHLNPIP--CCLESL-KKITQEAFGKRRKTLRQSLK-------RLGG 246 P PKV S V+ + P P E++ KK+ + AF RRKT+ SL R Sbjct: 189 PVPKVDSMVVS-LDFEKPYPRRAVNEAVFKKVVKGAFMHRRKTIINSLSGALPDQTRESL 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L GI+ + R E L + DF R+++ L Sbjct: 248 LEALAACGIDPSKRGEALEMGDFLRLSSAL 277 >gi|256824221|ref|YP_003148181.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547] gi|256687614|gb|ACV05416.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547] Length = 302 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 21/272 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K GQNF++D +++I +SG G V+E+G G G+LT LL + Sbjct: 28 VRELADRLGVSPTKQWGQNFVIDKGTVRRIVRASGVGPGDHVVEVGPGLGSLTLALLPV- 86 Query: 70 ARKVIVIEKDQQFFPILKD-ISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANL 125 + +E D + L D +++ P R L ++ DAL+V +P ++ANL Sbjct: 87 VDSLTAVEVDPRLAEALPDTVAALAPERATDLRVVHADALRV---TELPGPAPTALVANL 143 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNI ++ ++ P ++ ++ Q EV ER++A S YG S W Sbjct: 144 PYNIAVPVVLTFLERF---PSLRTVLVMVQLEVAERMSAAPGSKIYGAPSPKCAWYGPTR 200 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242 + I +VF+P+P V S ++ + P S +++ AF +RRKTLR +L Sbjct: 201 LAGRIGRNVFWPAPNVDSGLVRI--DVQPREDAGVSRQEVFACIDAAFAQRRKTLRAALA 258 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDF 269 G E L AGI+ R E L + F Sbjct: 259 EWAGSAQQAEEALVAAGIDPRTRGEVLDVHGF 290 >gi|319936596|ref|ZP_08011010.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1] gi|319808394|gb|EFW04954.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1] Length = 271 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 142/281 (50%), Gaps = 25/281 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + +L YK+ K GQNFL+DLN +K+I ++ VIEIG G G L++ Sbjct: 6 KKSNTQYLLDKYKLQASKKFGQNFLIDLNTIKRIVATTHIDKETCVIEIGPGIGALSEQ- 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRI 121 L A V E D + +LK+ + N +E++ D L VD +K S + I Sbjct: 65 LAYHAGYVRCYEIDTRLKDLLKESLGEFTN-IEVVFQDFLTVDLKKIVEELKQTYSKVCI 123 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGW 180 IANLPY I + +L + I + S+ + QKEV ++T Q +SP L+ + Sbjct: 124 IANLPYYITSDILEHIICSQAS---LSSIHAMVQKEVALKLTDTQYHSP----LTFMIES 176 Query: 181 RTKATMMFDISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 ++ +S +VF P+P+V S + IH N + L + ++AF ++RKT+ Sbjct: 177 IGTISLDMHVSRNVFSPAPRVDSAIIAIHIHKEYNIL------LTHLLKQAFTQKRKTIY 230 Query: 239 QSLKRLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK + G N +L Q I+ N R E L IED+ ++T L Sbjct: 231 NNLKVIFGTNTKYILEQCQIKENKRPEELKIEDYLKLTKYL 271 >gi|315639329|ref|ZP_07894491.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21] gi|315480655|gb|EFU71297.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21] Length = 260 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 128/268 (47%), Gaps = 20/268 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D IL KI ++ D ++EIG G G+LTQ LL + K I+ Sbjct: 2 IKAKKQYGQNFLHDKEILTKITQAIPK-DVKKIVEIGPGLGDLTQELLKISPVKAYEIDA 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLF 135 D F K + ++ DA ++ D +K+F ++ANLPY I ++L+ Sbjct: 61 DLIGFLRDKFQKELKEEKFILLHQDASELSCFDEDKYF-------LVANLPYYIASKLIL 113 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + L ++ QKE+ + A+ S +G L VL+ + ++FD+SP F Sbjct: 114 QALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPSCF 169 Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLH 251 P PKV S+V+ I L I C L+S K + F RK L +LK E L Sbjct: 170 NPPPKVVSSVMRLIKQKELKQI-CELDSFKSFLRICFKSPRKQLLSNLKAEKRELLELFE 228 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 G++ N+R L + + +I L D Sbjct: 229 DLGLKENVRPHELCVNSYLKIYEKLKDQ 256 >gi|329941211|ref|ZP_08290490.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045] gi|329299742|gb|EGG43641.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045] Length = 302 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 132/279 (47%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 13 AADIRELAGVLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPADVVVEVGPGLGSLTLALL 72 Query: 67 TLGARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L ++++ P +R ++ DAL+V +P ++ Sbjct: 73 E-AADRVTAVEIDDVLAGALPATVAARMPGRADRFALVHSDALRV---TELPGPAPTALV 128 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + DT+P +L ++ Q EV +R+ A S YG SV W Sbjct: 129 ANLPYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAAGPGSKVYGVPSVKANWYA 185 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ P+ + + AF +RRKTLR Sbjct: 186 EVRRAGSIGRNVFWPAPNVDSGLVSLTRRAEPVKTTAAKAEVFAVVDAAFAQRRKTLRAA 245 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E L++E+F RI Sbjct: 246 LAGWAGSAAAAEAALVAAGVPPQARGEALTVEEFARIAE 284 >gi|262200033|ref|YP_003271242.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365] gi|262083380|gb|ACY19349.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365] Length = 295 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 129/276 (46%), Gaps = 14/276 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LG 69 +T++ Y + KK GQNFL+ + I +++ VIE GAG G LT L + Sbjct: 13 RTLMRKYGLGAKKSWGQNFLISERAYRAIVDAAVRGGDDWVIEFGAGLGTLTMRLAERVP 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYN 128 KV+ +E+D++ +L+ H + +EII+ +AL D + + NLPYN Sbjct: 73 DGKVLAVERDREMAEVLRG-ELGHLDNVEIIEGNALTYDIAMVGRWYGERVSVCGNLPYN 131 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I ++++ + I A T++ Q+E+ +R+ A + YG L VL G + + Sbjct: 132 IASQIIMHIIDARE---HVARATVMIQREMADRLVAVPGTKAYGALGVLVGTFADVSTVI 188 Query: 189 DISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + F P+PKV+STV+ H+ + AFG+RRK LR +L Sbjct: 189 HVPASGFVPAPKVSSTVVRLDLLSDEHMRVQVSDFAHYADVVHGAFGQRRKKLRNALGAR 248 Query: 245 GGENL----LHQAGIETNLRAENLSIEDFCRITNIL 276 ++ L A I+ R E L +F R+ + L Sbjct: 249 WPMDVVDAGLSDADIDGGRRGETLDRVEFARLADHL 284 >gi|91200585|emb|CAJ73634.1| similar to dimethyladenosine transferase KsgA [Candidatus Kuenenia stuttgartiensis] Length = 310 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 143/294 (48%), Gaps = 36/294 (12%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ + + ++ K GQ+ L+D NIL IA S+ V+EIG G G+LT+ L Sbjct: 14 LRKLFARKGVVLNKKYGQHILIDQNILSYIANSASLQKDDVVLEIGTGTGSLTRYLAE-K 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL----KVDFEKFFNIS--------S 117 A V +E D + F + +I + N + II D L K++ E IS + Sbjct: 73 ACHVFTVEIDSKLFDLSSEILKFYKN-ITIINADILQSKHKLNAEIVTRISGWLATNNHT 131 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPYNI T ++ N + +D P + L+ QKE+ ER+TA S YG LSV+ Sbjct: 132 AFKVVSNLPYNISTPVIINLLESDL--PI-SLMVLMLQKEITERLTAAPGSREYGILSVI 188 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTV----IHFIPHLNPI---PCCLESLKKITQEAF 230 T ++ +M + P VF+P P+V+S + +H + N I P + KI F Sbjct: 189 TQLFSEVELMKTLPPEVFWPRPEVSSAIVKMSVHRAKYANKITDYPFFI----KIIYAIF 244 Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKTL S+++L + +L + N+R E L E +T L Sbjct: 245 TSRRKTLLNSIEKLKLPGVSRSELKRILAAMQLNENIRGEMLDPEQLIHLTESL 298 >gi|172037411|ref|YP_001803912.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51142] gi|254807863|sp|B1WRJ7|RSMA_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171698865|gb|ACB51846.1| rRNA dimethyladenosine transferase [Cyanothece sp. ATCC 51142] Length = 270 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 137/274 (50%), Gaps = 25/274 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L++I +++ ++EIG G G LT+ LL L + +I +E D Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPL-VQSLIAVELDW 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANLPYNIGTRL 133 L N L ++Q D LK+D F KF I+ +++AN+PYNI + + Sbjct: 63 DLCKKLVKSLGDEDNFL-LLQGDILKLDIATEAQQFPKFLPIN---KVVANIPYNITSPI 118 Query: 134 LFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L + + P P ++ + LL QKEV +RI A S +YG LS+ + + D+ Sbjct: 119 LDKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPGSKNYGALSIKMQYLADCNYICDVP 178 Query: 192 PHVFFPSPKVTSTVIHFIPH--LNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 F+P PKV S VI F P LN P LE+L + F RRK LR +L+ L Sbjct: 179 KKSFYPPPKVDSAVITFRPRSLLNSATNPKYLETLINL---GFSSRRKMLRNNLQSLIDR 235 Query: 248 NLLHQAGIETNL----RAENLSIEDFCRITNILT 277 +LL + E +L RAENL + + ++N + Sbjct: 236 DLLTEFLTEIDLNEQVRAENLDLNQWIALSNYFS 269 >gi|262277389|ref|ZP_06055182.1| dimethyladenosine transferase [alpha proteobacterium HIMB114] gi|262224492|gb|EEY74951.1| dimethyladenosine transferase [alpha proteobacterium HIMB114] Length = 255 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 14/220 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + KK GQNFL++ N+ ++I + ++ ++E+G+G LT ++ +K +E D Sbjct: 1 MAKKKFGQNFLINKNLCEEILKYE-KINNNNILEVGSGNLALTTKIINKNPKKFFSLEID 59 Query: 80 QQFFPILKDISSQHPNRL---EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ +H N L I + DAL ++ FN II+NLP+NI ++LL Sbjct: 60 D-------DLIEKHKNSLISKYIYKGDALNINELDLFN-KDKFSIISNLPFNISSKLLIK 111 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 W+ +S+TL+FQKE+ +RI A++N YGR++VL + + +++ F+ Sbjct: 112 WLRLQNDYKCIQSMTLMFQKELADRILAKENEKKYGRITVLVNAFFALSKIVEVNKKDFY 171 Query: 197 PSPKVTSTVIHFIP-HLNPIPC-CLESLKKITQEAFGKRR 234 P PKV +TVI F N I + L+KIT F +RR Sbjct: 172 PRPKVDATVIKFSSLKKNKIKKENFQKLEKITFSFFNERR 211 >gi|21221587|ref|NP_627366.1| dimethyladenosine transferase [Streptomyces coelicolor A3(2)] gi|256787224|ref|ZP_05525655.1| dimethyladenosine transferase [Streptomyces lividans TK24] gi|289771122|ref|ZP_06530500.1| dimethyladenosine transferase [Streptomyces lividans TK24] gi|27151606|sp|Q9K3R5|RSMA_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|8894782|emb|CAB95942.1| putative dimethyladenosine transferase [Streptomyces coelicolor A3(2)] gi|289701321|gb|EFD68750.1| dimethyladenosine transferase [Streptomyces lividans TK24] Length = 286 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 15 VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L ++++ P +R ++ DA+ V + +P ++ANL Sbjct: 74 ADRVTAVEIDDVLAGALPATVAARMPARADRFALVHSDAMHV---RELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + DT+P +L ++ Q EV +R+ A S YG SV W + Sbjct: 131 PYNVAVPVLLHML--DTFPGIERTL-VMVQAEVADRLAAGPGSKVYGVPSVKANWYAEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVSLVRRSEPLRTTASKAEVFAVVDAAFAQRRKTLRAALAG 247 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E L++E+F RI Sbjct: 248 WAGSAAAAEAALVGAGVSPQARGEALTVEEFARIAE 283 >gi|94970375|ref|YP_592423.1| dimethyladenosine transferase [Candidatus Koribacter versatilis Ellin345] gi|122064276|sp|Q1ILA1|RSMA_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94552425|gb|ABF42349.1| dimethyladenosine transferase [Candidatus Koribacter versatilis Ellin345] Length = 285 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 23/273 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQNFL D + KI E+ G + TV+EIG G G +T L A+++I +E D+ Sbjct: 15 KAKLGQNFLSDASGALKIVEALGDISDATVVEIGPGRGAITDHLAK-RAKRLIAVEIDRV 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFE----------KFFNISSP--IRIIANLPYNI 129 L+ S+ N +EI++ D L V+ + + P +RII NLPY I Sbjct: 74 LAAQLRLRYSRLEN-VEILEADILAVELSTVLAQRIGPLRDLRPTKPEKVRIIGNLPYYI 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +L A F ++ QKEV +RI A+ + YG LS + T +F Sbjct: 133 TSDILLRLFEAHALIDFA---VIMVQKEVADRIAAKPGTRDYGLLSATSQLYTHVEKLFT 189 Query: 190 ISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKT----LRQSLKR 243 + P F P+P+V STV + P L + E + FG++RKT LR + Sbjct: 190 LPPGSFNPAPQVHSTVLKLQMEPKLEALGVDEEGFDSFLKLIFGQKRKTLFNNLRVAYDM 249 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + G+++++RAE +++E ++ N L Sbjct: 250 AKAREAMKAVGLKSDVRAEAVALEKTAQLYNEL 282 >gi|229819472|ref|YP_002880998.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333] gi|229565385|gb|ACQ79236.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333] Length = 324 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/276 (31%), Positives = 133/276 (48%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + I P K +GQNF+ D +++I ++G G V+E+G G G+LT LL G Sbjct: 34 VRALAAGLGIRPTKTLGQNFVTDAGTVRRIVRAAGVTAGDVVVEVGPGLGSLTLGLLEAG 93 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V+ +E D L ++H +RL +I DAL V P ++ANL Sbjct: 94 A-TVVAVEIDPVLAGALPGTIAEHAPDVADRLTVITADALDVTELP----GRPSAMVANL 148 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P L ++ Q EV +R+ A S YG SV W A Sbjct: 149 PYNVAVPVLLTML--ERFPELARVL-VMVQAEVADRLVAPPGSRTYGVPSVKAAWYAAAA 205 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 I VF+P P V S ++ P P L + + AF +RRKTLR +L Sbjct: 206 RAGSIGRTVFWPVPNVDSALVRLERRPAPAPEDLRAEVFGCVDAAFAQRRKTLRAALAGW 265 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E++L AG++ LR E L +E F R+ ++ Sbjct: 266 AGSPSDAESILRAAGVDPTLRGERLDVEAFARVASV 301 >gi|325957949|ref|YP_004289415.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium sp. AL-21] gi|325329381|gb|ADZ08443.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium sp. AL-21] Length = 273 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +LK IL I K GQN+L++ +IL KI ++S V+EIGAG G LT + L Sbjct: 3 SETLK-ILKQNGIKLDKRKGQNYLVNRDILSKIIQNSELSKNDRVLEIGAGIGTLT-IPL 60 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A KV +E+D + +LK + + +E+I +DA K+D + S ++I+NL Sbjct: 61 AKNAGKVYAVEQDGKAANVLKKRLEKLELDNVEVIVEDATKMD------LPSVNKVISNL 114 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F + PF E L++QKE +R+ A +Y RLSV+ ++A Sbjct: 115 PYQISSPITFKILEN----PF-EMAVLMYQKEFAQRMVASPGDRNYSRLSVMMYLYSEAE 169 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSL 241 ++F +S + FFP PKV S VI P ++ P ++ +T+ F ++K +R +L Sbjct: 170 ILFQVSENDFFPKPKVASAVIKMQPKIDVDIDPFFVD----VTRAMFQHKKKKIRNAL 223 >gi|145295068|ref|YP_001137889.1| dimethyladenosine transferase [Corynebacterium glutamicum R] gi|166221660|sp|A4QCP0|RSMA_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|140844988|dbj|BAF53987.1| hypothetical protein [Corynebacterium glutamicum R] Length = 293 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 132/282 (46%), Gaps = 24/282 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N +++I ++ V+E+G G G+LT + L Sbjct: 15 IRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLT-LALVES 73 Query: 70 ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKV---DFEKFFNISSPIRII 122 A V +E D + L + + ++L I+ DALKV D E P ++ Sbjct: 74 AASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDME-----VQPTALV 128 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P + ++ Q EV +R+ A S YG SV + Sbjct: 129 ANLPYNVSVPVLLHMLEEF---PTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYG 185 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQ 239 T I +VF+P+PK+ S ++ + E+ KK I AF +RRKTLR Sbjct: 186 PVTRAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRA 245 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L G E L A I+ LR E L + D+ R+ +L Sbjct: 246 ALSGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVL 287 >gi|19552136|ref|NP_600138.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC 13032] gi|62389800|ref|YP_225202.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC 13032] gi|27151568|sp|Q8NRY1|RSMA_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21323676|dbj|BAB98303.1| Dimethyladenosine transferase (rRNA methylation) [Corynebacterium glutamicum ATCC 13032] gi|41325135|emb|CAF19616.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 293 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 18/279 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N +++I ++ V+E+G G G+LT + L Sbjct: 15 IRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLT-LALVES 73 Query: 70 ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D + L + + ++L I+ DALKV ++ P ++ANL Sbjct: 74 AASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKV--QQSDMAVQPTALVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + P + ++ Q EV +R+ A S YG SV + T Sbjct: 132 PYNVSVPVLLHMMEEF---PTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPVT 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLK 242 I +VF+P+PK+ S ++ + E+ KK I AF +RRKTLR +L Sbjct: 189 RAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRAALS 248 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L A I+ LR E L + D+ R+ +L Sbjct: 249 GHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVL 287 >gi|307128523|ref|YP_003880553.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI] gi|306482985|gb|ADM89855.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI] Length = 254 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 129/257 (50%), Gaps = 19/257 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ FL D NI KKI S + ++EIG G G LTQ LL +IE D++ Sbjct: 4 KKKLGQFFLHDKNIAKKIVNSISFKESKNIVEIGPGMGILTQYLLLNNKNLF-LIEIDKK 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFN 136 + LK ++P II+++ +F + FF S +I N PYNI +++LF Sbjct: 63 YVSYLK---MKYP----IIKNNIFHKNFLNWKPKDFFLYS--FTLIGNFPYNISSQILFY 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + P E + + FQKEV +RIT++ + +YG+LSV+ K +F ++ VF Sbjct: 114 IIKYREYIP--ECIGM-FQKEVADRITSKHMNKNYGKLSVIMQTFYKIEYLFTVNNTVFR 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P V S V+ + N I KI + AF RRK L SLK L +Q + Sbjct: 171 PKPNVKSAVVRMLKKKNNINIKDSIFFKIVKTAFLYRRKKLYNSLKILSLSPDFYQNPLL 230 Query: 257 TNLRAENLSIEDFCRIT 273 R E LS+ DF +T Sbjct: 231 KK-RVEQLSVNDFILLT 246 >gi|121612576|ref|YP_001001355.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006244|ref|ZP_02272002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81-176] gi|87249040|gb|EAQ72002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 266 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 131/264 (49%), Gaps = 18/264 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ QKE+ E+ A++ + + L VL+ + ++FD+ P F P Sbjct: 119 EDKNCL----GLIVMVQKEMAEKFCAKEGNGEFSSLGVLSAMICERKILFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAG 254 PKV S V+ I N + C +E+ K ++ F RK L +LK + L L G Sbjct: 175 PKVISAVMSLIKTKDFNEL-CEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLG 233 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ N+R + ++ + +I + L D Sbjct: 234 LKENIRPHEICVDSYLKIYDKLKD 257 >gi|256420284|ref|YP_003120937.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588] gi|256035192|gb|ACU58736.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588] Length = 249 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 134/261 (51%), Gaps = 27/261 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL D NI +KI E+ G ++E+G G G +T+ LL + +E D + Sbjct: 5 KKSLGQHFLKDENICRKIVEALPVNPGQQIVEVGPGAGAITKYLLQIPDVHFKAVELDTE 64 Query: 82 FFPILKDISSQHPN-RLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 ++ + +P + +II + L V ++ FN +I N PYNI ++++F + Sbjct: 65 ---KVQYLEKTYPAIQGKIINESILDTPVPYQGEFN------LIGNFPYNISSQIMFRVL 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 W S+ +FQKEV RI A K YG LSVLT K +F++ + F P Sbjct: 116 E---WRQQVPSVVGMFQKEVALRIAATKGK-EYGILSVLTQAFYKVEYLFEVHENCFNPP 171 Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 PKV S VI L+ + + S +K + + AFG+RRK LR LK L + +L + Sbjct: 172 PKVKSAVI----RLDRLETSYDIASERKFFVLVKTAFGQRRKQLRNPLKGLFAKEVLQDS 227 Query: 254 GIETNLRAENLSIEDFCRITN 274 N RAE LS+ DF +++ Sbjct: 228 IF--NKRAEELSVADFAALSH 246 >gi|51246027|ref|YP_065911.1| dimethyladenosine transferase [Desulfotalea psychrophila LSv54] gi|62900516|sp|Q6AL71|RSMA_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50877064|emb|CAG36904.1| related to dimethyladenosine transferase [Desulfotalea psychrophila LSv54] Length = 295 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 33/289 (11%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 +T L +K+ PKK GQNFL+ + I + + + EIG G G LT + + A Sbjct: 8 RTDLKKHKLAPKKRFGQNFLVHKQTAEAIVRAGEVGEDDIITEIGVGLGALT-VPMAHQA 66 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129 + V IE D ++ P+ + +I D LKV F ++I+ANLPY+I Sbjct: 67 KHVYGIEIDNGIIKYHEE-EQDLPDNVTLIHQDVLKVGFGDLAEKCGGKLKILANLPYSI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 L+F I P + T++ Q+EV +R+ A+ + YG ++L G Sbjct: 126 SHPLIFKLIEHRDIIP---TATIMLQEEVADRLLAKPGTKEYGIPTILLGCCASIKKKMV 182 Query: 190 ISPHVFFPSPKVTSTVIHF-------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + P F P PK+ S VI +P N E L ++ + AF +RRKT+ +L Sbjct: 183 LKPAEFHPRPKIDSAVITVDFTKPPELPEYNK-----ELLSRVVRSAFSQRRKTILNTLS 237 Query: 243 ---------------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + E + +AG +LR E LSI+DF R+T + Sbjct: 238 SASFFFAEKENKAKNKAMTEKTIEKAGFAVSLRPEVLSIQDFVRLTTVF 286 >gi|145349952|ref|XP_001419390.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579621|gb|ABO97683.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 320 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 117/239 (48%), Gaps = 14/239 (5%) Query: 3 MNNKSHSLKTILSHYKIIP-KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 + KSH S Y+ I K GQ+ L + I+ I + +G V+EIG G GNL Sbjct: 22 VRKKSHGGAEDRSAYQGIQFLKSFGQHILKNPAIVNAIVDKAGVKSTDVVLEIGPGTGNL 81 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSP 118 T LL +KVI +E D + L+ P +RLEIIQ D LKVD +F++ Sbjct: 82 TTKLLD-ACKKVIAVEFDPRMVLELRRRVQSDPAQNSRLEIIQGDFLKVDLP-YFDVC-- 137 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +AN+PY I + L+F ++ P + S TL+FQ+E R+ A Y RLSV T Sbjct: 138 ---VANVPYQISSPLIFKLLAHR---PMFRSATLMFQREFAMRLVAPPGDALYCRLSVNT 191 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + + + F P PKV S+V+ P IP + + + FG++ KTL Sbjct: 192 QLLARTQHILKVGKNNFRPPPKVDSSVVRIEPRHPQIPVNFKEWDGLVRFCFGRKNKTL 250 >gi|327542154|gb|EGF28647.1| rRNA adenine dimethylase [Rhodopirellula baltica WH47] Length = 326 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 30/291 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L L+ + P GQNFL+DLN+++ IA S+ V+EIG G G+LT ++ + Sbjct: 34 LSKRLTAAGLRPVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTSIMAS-Q 92 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--------- 120 A ++ +E DQ F + + + P+ +++IQ DALK +I IR Sbjct: 93 AGAILTVEIDQNLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDD 151 Query: 121 ----IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++ANLPYN+ T ++ N + D P + + + QKE+GER+ A S YG LS+ Sbjct: 152 SKFMLVANLPYNVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSI 208 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPH--LNPIPCCLESLKKITQEAFGKR 233 +A ++ + P VF+P PKV S ++ + H N IP L+ + + F R Sbjct: 209 WIQATCRAEIVRILPPTVFWPRPKVDSAIVRLDVDHERRNAIP-DLKYFHQTVRALFFHR 267 Query: 234 RKTLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RK LR L + + +L + G RAE L++E + L Sbjct: 268 RKFLRSVVISAMKGRLDKPAIDEILGRLGHGETARAEELNLEQISELVEAL 318 >gi|325294975|ref|YP_004281489.1| ribosomal RNA small subunit methyltransferase A [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065423|gb|ADY73430.1| Ribosomal RNA small subunit methyltransferase A [Desulfurobacterium thermolithotrophum DSM 11699] Length = 253 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 16/261 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL D NI++KI +S VIEIG G G LT+ +L +++IVIE D+ Sbjct: 4 KKSLGQHFLKDRNIIRKIVDSGNITFEDRVIEIGPGGGALTEEILKRNPKELIVIEIDKD 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + L++ + +R++I+ DA K DF F + NLPYN+ T +L N + Sbjct: 64 WVEHLRE---KFGDRIKIVNADATKFDFSSF---DGKFKYFGNLPYNVSTAILRNLLDHK 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E + QKEV R++A+K YG L L +FD+SP F P PKV Sbjct: 118 DS---VEKGIFMVQKEVANRLSARKGK-EYGYLPALLSLFFDIKKLFDVSPRAFTPPPKV 173 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL-- 259 STV + P +E + I E+F KR + R+ + + + I + Sbjct: 174 MSTVF----MMTPKEFDIEEKELIEFESFLKRAFSQRRKKLKSNLKLKNYPEEISEYMER 229 Query: 260 RAENLSIEDFCRITNILTDNQ 280 RAE L E + + D Q Sbjct: 230 RAEKLPPEKLLELFYTVRDFQ 250 >gi|257469508|ref|ZP_05633600.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185] gi|317063752|ref|ZP_07928237.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185] gi|313689428|gb|EFS26263.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185] Length = 264 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 17/264 (6%) Query: 22 KKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D +L+KI E S + TV+EIG G G LT +LL A KV+ +E D+ Sbjct: 6 KKKFGQNFLTDQKEVLRKIMEVSAVNENDTVLEIGPGEGALTALLLD-TAEKVVTVEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ +P + ++ +D L+ D +++ + + +++AN+PY I + ++ I Sbjct: 65 DLEKILRKKFDGNP-KYTLVMNDVLETDLKEY--VGAGTKVVANIPYYITSPIINKLIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + ++ QKEV ERI A+K L++ + +A +F I F P PK Sbjct: 122 ---RDVIDEIYIMVQKEVAERICAKKGKER-SVLTLAVEYFGEAEYLFTIPKEAFTPIPK 177 Query: 201 VTS---TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQ 252 V S ++ + + K + AF +RK L + LG +L++ Sbjct: 178 VDSAFMSIKLYKDDKYKKLVAEDIFFKYVKAAFANKRKNLLNNFTSLGMSKDELRVVLNE 237 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 GI+ RAENL+IEDF + + Sbjct: 238 VGIKETERAENLTIEDFINLIAVF 261 >gi|238028595|ref|YP_002912826.1| dimethyladenosine transferase [Burkholderia glumae BGR1] gi|237877789|gb|ACR30122.1| Dimethyladenosine transferase [Burkholderia glumae BGR1] Length = 276 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 125/281 (44%), Gaps = 25/281 (8%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72 H +K GQNFL+D ++ I + G ++EIG G G LT + L Sbjct: 7 HQGHFARKRFGQNFLVDTGVIDSIVSTIRPERGQRMVEIGPGLGALTGPVIERLATPEAP 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130 + +E D+ LK + + LE+ DAL DF +RII NLPYNI Sbjct: 67 LHAVELDRDLIGRLK---QRFGSLLELHAGDALGFDFGALALPGEQPSLRIIGNLPYNIS 123 Query: 131 TRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + LLF+ + F E + + Q EV ER+ A+ S + RLSV+ +R + Sbjct: 124 SPLLFHLMR------FAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKL 177 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-----LKKITQEAFGKRRKTLRQSLK 242 D+ P F P PKV S ++ IPH P L L ++ AF +RRK LR +L Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPH---APHELAEVDVGVLGEVVTAAFSQRRKMLRNTLG 234 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++ + ++ R+ + + A Sbjct: 235 AYRDVVDFEALGFDLARRAEDVGVAEYVRLARTVAATRPAA 275 >gi|300681352|emb|CAZ96099.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570] Length = 333 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 139/287 (48%), Gaps = 34/287 (11%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 61 TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQA 120 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119 GA V +EKD+ ++KD +L++I++D K EK Sbjct: 121 GA-TVFAVEKDKHMAALVKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKCHATKKLA 178 Query: 120 RIIANLPYNIGT---RLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLS 175 ++++NLP+N+ T RLL + + L+ Q E R+ A SP Y ++ Sbjct: 179 KVVSNLPFNVSTEVVRLLL------PMGDVFSVVVLMLQDETAVRLADASIQSPEYRLIN 232 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRR 234 V + ++ F ++ FFP PKV VI F + + P AF +R Sbjct: 233 VFVNFYSEPEYKFRVNRENFFPQPKVDGAVISFKLKNAEEYPPV--------NSAFMGKR 284 Query: 235 KTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K LR+SL+ L E+ L G+ R +L ++DF R+ N LT Sbjct: 285 KMLRKSLQHLCSSSEIESALGNIGLPVTARPSDLILDDFVRLHNHLT 331 >gi|315230155|ref|YP_004070591.1| dimethyladenosine transferase [Thermococcus barophilus MP] gi|315183183|gb|ADT83368.1| dimethyladenosine transferase [Thermococcus barophilus MP] Length = 280 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 16/231 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++LS Y + +GQNFL+ +I+K+ E + TV+EIG G G LT L + A+ Sbjct: 8 SLLSKYNLRINSDLGQNFLIVDDIIKREVERAEIKANETVLEIGPGLGFLTDEL-SKYAK 66 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV +EKD + IL+ S +EII+ DALKV+F +F +I++NLPY I + Sbjct: 67 KVYAVEKDSRLVEILQKEYSW--KNVEIIRGDALKVEFPEF------DKIVSNLPYQISS 118 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F ++ D ++ L++Q E +R+TA+ +Y RLSV+ + ++ I Sbjct: 119 PITFKFLRYD-----FKKAVLIYQLEFAQRMTAKPGDKNYSRLSVMVQAKADVELVERIG 173 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F+P PKV S VI P P +E + + F RRK ++LK Sbjct: 174 RGAFYPKPKVDSAVIILNP--KPKEEQIELDDSLVKALFQHRRKKASKALK 222 >gi|88856859|ref|ZP_01131512.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1] gi|88813929|gb|EAR23798.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1] Length = 276 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 138/272 (50%), Gaps = 34/272 (12%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P K +GQNF++D N +++I +++ + G TV+E+G G G+LT LL GA V+ +E Sbjct: 19 IQPTKKLGQNFVIDPNTVRRIVKAAHVVSGETVVEVGPGLGSLTLGLLETGA-SVVAVEI 77 Query: 79 DQQFFPILK-DISSQHPN-RLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTR 132 D++ L +S P+ +L +I DDAL+V D + F +ANLPYN+ Sbjct: 78 DKRLAAQLPLTVSQMQPDAQLTVITDDALRVTELPDDPRVF--------VANLPYNVSVP 129 Query: 133 LLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 +L +++ ++SL ++ Q EVG R+ A S YG S+ W + + Sbjct: 130 VLLHFLE------HFDSLDRGLVMVQAEVGNRVAAGPGSKVYGSPSIKAAWYGEFSTAGL 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG 246 +S VF+P P V S ++ F P +E K + AF +RRK LRQSL + G Sbjct: 184 VSRQVFWPVPNVDSVLVRF--ERREQPGTVEERKATFALVDAAFQQRRKMLRQSLSSVLG 241 Query: 247 ENL-----LHQAGIETNLRAENLSIEDFCRIT 273 + L AG+ R E L++ DF I Sbjct: 242 NSTAASERLIAAGVAPTARGEELTVHDFLAIA 273 >gi|75911082|ref|YP_325378.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413] gi|122064280|sp|Q3M3F3|RSMA_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|75704807|gb|ABA24483.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413] Length = 271 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 13/267 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P++ Q++L L I +++ ++EIG G G LT+ LL L ++ +E D+ Sbjct: 4 PRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPL-VEALLAVEIDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFN 136 +L Q N L ++Q D L +D F P +++AN+PYNI ++ Sbjct: 63 DLCKLLVKQLGQKENFL-LLQGDFLTLDLVANLLTFPKFQKPNKVVANIPYNITGPIIEK 121 Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + A+ P ++S+ LL QKEV ER+ A+ S +G LSV + + D+ Sbjct: 122 LLGTIANPNPEPFDSIVLLIQKEVAERLYAKAGSRTFGALSVRVQYLADCEFICDVPAGA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249 F P PKV S V+ P IP + L+ + + FG +RK LR +L+ + + L Sbjct: 182 FHPPPKVDSAVVRLRPRQIQIPARDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQL 241 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L Q I RAE++S + + + N+L Sbjct: 242 LEQLNINPQARAEDISTQQWVELANLL 268 >gi|239906699|ref|YP_002953440.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1] gi|239796565|dbj|BAH75554.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1] Length = 276 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 12/259 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ +GQNFL+D N+ KI TVIEIG G G L+ +L G R + +EKD++ Sbjct: 20 KRSLGQNFLVDPNVSAKIVAQLRIGPEDTVIEIGPGRGALSGHILAAGPRAYLALEKDRE 79 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + + +HP + D AL++D+ + + +++ NLPYNI + LL++ S Sbjct: 80 ---LAARLPREHPGAHPALVD-ALRLDWSRLDALDG-AKLVGNLPYNIASPLLWDICSQA 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + Q EV R+ A YG L+ T + F +SP VF P PKV Sbjct: 135 S---RFAVGVFMVQHEVALRLCAAPGGRQYGALTAWTSSFARFDYCFKVSPGVFRPQPKV 191 Query: 202 TSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---GIET 257 S V+ P + P L + + F RRK L LK E L GIE Sbjct: 192 DSAVVAVTPRASKERPEDPAGLATLLKRLFSMRRKQLAGILKPHWDEALAQACAGHGIEG 251 Query: 258 NLRAENLSIEDFCRITNIL 276 +R E L+ F ++ +L Sbjct: 252 RVRPETLTPGQFQQLAKLL 270 >gi|187735621|ref|YP_001877733.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC BAA-835] gi|187425673|gb|ACD04952.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC BAA-835] Length = 459 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 141/285 (49%), Gaps = 15/285 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K ++ +L +++ P K +GQNFL D N+ + I E V+E+G G G+LT+ Sbjct: 2 KPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEHA 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L RK++++E D + K+ + P+ +E+ D D F +P++ + NL Sbjct: 62 APL-CRKLVLVEFDSRLAEYQKERWAGDPH-VEVHHADGASWDPRGLF-AEAPVKFLGNL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS--VLTGWRTK 183 PY+ G +L N++S P E ++ QKE +RI A + +G LS + W + Sbjct: 119 PYSAGGAILQNFLSR---PSAVERAVVMLQKEFIDRILATPDDDAFGLLSLRIQKNWIPR 175 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241 A + I P F P P++ STV+ P +P + L ++ ++AF +RRK L++ L Sbjct: 176 A--LKTIPPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQL 233 Query: 242 -KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN--QDIA 283 E + G+ + RAE L++ + + + N +D+A Sbjct: 234 PASPPWEGVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVA 278 >gi|110590504|pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum gi|110590505|pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D + Sbjct: 19 FQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMI 77 Query: 84 P-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + K + N LE+ + DA+K F KF ++ + AN+PY I + L+F IS Sbjct: 78 SEVKKRCLYEGYNNLEVYEGDAIKTVFPKF-DVCT-----ANIPYKISSPLIFKLISHR- 130 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P ++ L+FQKE ER+ A +Y RL++ K T + +++ F P PKV Sbjct: 131 --PLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVD 188 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S ++ IP + + + + F ++RKTL KR N+L Sbjct: 189 SVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 238 >gi|124808498|ref|XP_001348329.1| dimethyladenosine transferase, putative [Plasmodium falciparum 3D7] gi|23497221|gb|AAN36768.1|AE014818_33 dimethyladenosine transferase, putative [Plasmodium falciparum 3D7] Length = 381 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ KK+ GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ Sbjct: 71 ILYKKH-GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDI 128 Query: 79 DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + K + N LE+ + DA+K F KF ++ + AN+PY I + L+F Sbjct: 129 DSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF-DVCT-----ANIPYKISSPLIFKL 182 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 IS P ++ L+FQKE ER+ A +Y RL++ K T + +++ F P Sbjct: 183 ISH---RPLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNP 239 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S ++ IP + + + + F ++RKTL KR N+L Sbjct: 240 PPKVDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 294 >gi|124486386|ref|YP_001031002.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z] gi|124363927|gb|ABN07735.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z] Length = 258 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D + + IA+S + G TV+E+G G G LT LL GA V +E D P L Sbjct: 7 QHFLIDTDAVDFIADSI-PIQGRTVLEVGPGGGVLTAALLERGA-NVRAVELDGTLLPNL 64 Query: 87 KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + +L I + DA +V + +IANLPY+I +++ F + Sbjct: 65 EQRFEEELSTGQLTITRGDASRVPLPAYD------LVIANLPYSISSKITFRLLETG--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 +E+ L++Q E +R+ + YGRLSV+ ++ + P F P P+V S Sbjct: 116 --FETAVLMYQWEFAKRMVSPPGDGEYGRLSVMVQTYADVELILKLPPQAFNPPPEVDSA 173 Query: 205 VIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLG---GENLLHQ--AGIETN 258 V+ IPH P+ + + +E F RRKT++ LK + GE ++ + + + Sbjct: 174 VVKIIPHEPPVKILNRDVHAVLVRELFSHRRKTIQNGLKGMKSIYGEEVMTKLIGSLPND 233 Query: 259 L---RAENLSIEDFCRITNILTD 278 L R E LSI DF + N LT+ Sbjct: 234 LLGKRPEMLSIVDFIELANRLTN 256 >gi|32477477|ref|NP_870471.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1] gi|62900568|sp|Q7UIR4|RSMA_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|32448031|emb|CAD77548.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1] Length = 284 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 30/280 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P GQNFL+DLN+++ IA S+ V+EIG G G+LT ++ + A ++ +E DQ Sbjct: 3 PVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTSIMAS-QAGAILTVEIDQ 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-------------IIANLPY 127 F + + + P+ +++IQ DALK +I IR ++ANLPY Sbjct: 62 NLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFMLVANLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ T ++ N + D P + + + QKE+GER+ A S YG LS+ +A ++ Sbjct: 121 NVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSIWIQATCRAEIV 177 Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ----- 239 + P VF+P PKV S ++ + H N IP L+ + + F RRK LR Sbjct: 178 RILPPTVFWPRPKVDSAIVRLDVDHERGNAIP-DLKYFHQTVRALFFHRRKFLRSVVISA 236 Query: 240 ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L + + +L + G RAE L++E + L Sbjct: 237 MKGRLDKPAIDEILGRLGHGETARAEELNLEQISDLVEAL 276 >gi|108758752|ref|YP_630281.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622] gi|118600879|sp|Q1DAP2|RSMA_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|108462632|gb|ABF87817.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622] Length = 283 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 132/278 (47%), Gaps = 17/278 (6%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S + IL + + K GQNFL D + L+ IA++ V+E+G G G+LT+ L Sbjct: 2 ESPRDILKRHGLRAKYSWGQNFLGDEDALEAIADALNLRADEPVVELGPGLGHLTRFLAA 61 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR V +E+D+ +L+ P + ++ +A VDF + + + NLPY Sbjct: 62 TGAR-VTAVERDRDMVMVLE--KEAIPG-VRVVSGNAATVDFAQVAGAPD-VAVAGNLPY 116 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 ++ + +LF + QKEV ER+ A+ + YG L+VL G A + Sbjct: 117 HLTSPILFRVLEQRA---HVSRAVFTLQKEVVERLAAEPGNRDYGLLTVLLGMHYDAENV 173 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR-- 243 + F P PKV S V+ +P ++ + ++ + +F RRKTL S+K Sbjct: 174 LTLEAWRFHPPPKVDSAVLRLTRRKSPRAPIIDEARFTRVVKASFAHRRKTLINSIKSDP 233 Query: 244 -LG-GENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 LG E L L AG++ RAE L+ E+F I L Sbjct: 234 TLGTTETLIAALEAAGVDPQRRAETLTPEEFAAIERAL 271 >gi|171911937|ref|ZP_02927407.1| dimethyladenosine transferase [Verrucomicrobium spinosum DSM 4136] Length = 441 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 10/258 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNFL D I K IA+ V+EIG G G +T L+ A K +++EKD Sbjct: 14 PKKSLGQNFLHDAGIAKWIADEIKPDGAPLVVEIGPGQGAMTTHLVGRAA-KTLLLEKDN 72 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 LK + + +E+ DA + D F +++I NLPY++G +L + ++ Sbjct: 73 TLAADLK-VKFEGREDVEVWHGDATRFDLRPLFKFGG-VKVIGNLPYSMGGEILRHVLTP 130 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 T P E++ +L QKEV +R+ A + YG LS++ + + I P VF P PK Sbjct: 131 PT--PVTEAVFML-QKEVCQRLAADQEDDAYGGLSLVVQHDWEVEIRRIIPPEVFKPRPK 187 Query: 201 VTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIE 256 V S ++ P +P ++ ++ + F +RRK L+ L G ++L+ Sbjct: 188 VDSAIVRLTPRPPGDLPVHDRAVFDRLVRMGFSQRRKQLKNLLPECPGGWDSLMGSLSKP 247 Query: 257 TNLRAENLSIEDFCRITN 274 +RAE L++ D+ +T Sbjct: 248 LTVRAEELTLWDWVALTR 265 >gi|119870378|ref|YP_940330.1| dimethyladenosine transferase [Mycobacterium sp. KMS] gi|126437207|ref|YP_001072898.1| dimethyladenosine transferase [Mycobacterium sp. JLS] gi|226732600|sp|A3Q5I0|RSMA_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732601|sp|A1UL32|RSMA_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119696467|gb|ABL93540.1| dimethyladenosine transferase [Mycobacterium sp. KMS] gi|126237007|gb|ABO00408.1| dimethyladenosine transferase [Mycobacterium sp. JLS] Length = 294 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 123/265 (46%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 P+K GQNF+ D N +++I +SG V+E+G G G+LT LL GA V +E D Sbjct: 22 PRKSFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLGSLTLALLDRGA-HVTAVEIDP 80 Query: 80 ---QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 QQ + D S NRL ++ D L + N P ++ANLPYN+ L + Sbjct: 81 LLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN--QPTALVANLPYNVAVPALLH 138 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P S+ ++ Q EV ER+ A YG S + +SP VF+ Sbjct: 139 LLAEF---PTIRSVMVMVQAEVAERLAADPGGKDYGVPSAKVRFYGNVRRYGMVSPTVFW 195 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGEN---- 248 P P+V S ++ + +P P + ++ AF +RRKT R + G Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFAQRRKTSRNAFAEWAGSGNESA 255 Query: 249 -LLHQAGIETNLRAENLSIEDFCRI 272 L A I+ + R E L+I DF R+ Sbjct: 256 RRLLAASIDPSRRGETLAIADFVRL 280 >gi|218441380|ref|YP_002379709.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424] gi|218174108|gb|ACK72841.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424] Length = 273 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 21/269 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L +I E++ ++EIG G G LT+ LL V+ +E D+ Sbjct: 5 PRKRFAQHWLRSEQALDQIIEAAQLQQSDHILEIGPGTGILTRRLLP-EVNSVVAVEIDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFN 136 L + N L ++Q D L +D E F + P +++AN+PYNI T L+ Sbjct: 64 DLCQKLGKSLGKLDNFL-LLQGDILSLDLESHLVNFPKFNHPHKVVANIPYNI-TGLILE 121 Query: 137 WISADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 ++ P +E + LL QKEV ER+TA+ + YG LS+ + + + ++ Sbjct: 122 YLLGTIAEPTQKNYELIVLLIQKEVAERLTAKPGTKAYGALSIRVQYLAQCEWICEVPAR 181 Query: 194 VFFPSPKVTSTVIHFIPHL--NPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248 F+P PKV S V+ P L NP P L++L K+ F RRK L +L + + Sbjct: 182 AFYPPPKVDSAVVRLRPQLVSNPANNPKQLDTLIKL---GFANRRKMLYNNLTSVIDRDQ 238 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITN 274 LL + I RAE+LS+E + +N Sbjct: 239 LTQLLEKLHINPQCRAEDLSLEQWIEFSN 267 >gi|193214866|ref|YP_001996065.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC 35110] gi|193088343|gb|ACF13618.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC 35110] Length = 256 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 125/251 (49%), Gaps = 15/251 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D NI +KI S+ + VIEIG G G+LT+++ + R +E D + Sbjct: 13 KKSFGQNFLVDSNISRKIVRSAEIAEHDNVIEIGPGFGSLTKIISEVMPR-FTCVELDHK 71 Query: 82 FFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L D IS + PN + +I DD LKVD K + P+ ++ N+PY I + +LF I Sbjct: 72 ----LADFISREFPN-VNLISDDFLKVDLAKLAE-TKPLTVLGNIPYAITSPILFKLIEN 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + L+ Q EV R+TA+ + YG L+V K +F + VF P P+ Sbjct: 126 RAH---IDRAVLMMQDEVARRLTAEPKTKQYGILAVQLQAFGKPEYLFKVPKTVFKPRPE 182 Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S V+ I P+ S + + AF RRKTL +LK G ++ A Sbjct: 183 VESAVVR-IDFSKPVEIKNPSEFQTFVRTAFRMRRKTLANNLK--GKYDVSALAPEVLKK 239 Query: 260 RAENLSIEDFC 270 RAE S+ +F Sbjct: 240 RAEAFSVTEFV 250 >gi|317969764|ref|ZP_07971154.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Synechococcus sp. CB0205] Length = 278 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 16/230 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D ++L +I +++ TV+E+G G G LT+ LL AR V +E D+ Sbjct: 9 RKRFGQHWLKDQSVLDRILQAAELTAADTVLEVGPGRGALTERLLESSARAVCAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ +P R + + D L V+ + ++AN+PYNI LL + Sbjct: 69 LVSGLQERFGANP-RFSLTEGDVLAVELPEATA------VVANIPYNITGPLLERLVGRL 121 Query: 142 TWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + L LL Q+EVGERI A+ S Y LSV + + + + P F P P Sbjct: 122 DRPALQPYRRLVLLVQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCPVPPRCFQPPP 181 Query: 200 KVTSTVIHFIP-----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 KV S V+ P L+ P ++++ + + F RRK LR +L L Sbjct: 182 KVMSEVVALDPLPLEQRLD--PALAKTVEMLLRRCFAARRKMLRNTLSGL 229 >gi|255533693|ref|YP_003094065.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366] gi|255346677|gb|ACU06003.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366] Length = 260 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK++GQ+FL D NI KI D V+E+G G G L+ +LL + +I+ D Sbjct: 7 KKHLGQHFLTDKNIAAKIVNGLVHTDKYKQVLEVGPGMGILSDLLLERKDLETYLIDIDV 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + L+ Q +RL I D L ++ F II N PYNI +++LF + Sbjct: 67 ESYHFLQQKYPQLGSRL--INGDFLALNLSDIF--KDKYAIIGNFPYNISSQILFKILEN 122 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + +FQKEV ER +++ + YG LSVL +F + P F P PK Sbjct: 123 RSSVV---EMVGMFQKEVAERCASKEGTKDYGILSVLIQAYYHIEYLFTVKPGTFNPPPK 179 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S VI + + +PC + + + F +RRKTLR +L + ++ + + + Sbjct: 180 VNSGVIRLSRNAVETLPCDEKLFWRTVKAGFNQRRKTLRNALSGIIPKDKMDEHPF-FDK 238 Query: 260 RAENLSIEDFCRITNILT 277 RAE LS+ DF +T+ L Sbjct: 239 RAEQLSVNDFIVLTSHLA 256 >gi|302530292|ref|ZP_07282634.1| dimethyladenosine transferase [Streptomyces sp. AA4] gi|302439187|gb|EFL11003.1| dimethyladenosine transferase [Streptomyces sp. AA4] Length = 280 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 133/267 (49%), Gaps = 17/267 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N +++I E G G V+E+G G G+LT LL G Sbjct: 10 IRGLADELDVRPTKKLGQNFVHDPNTVRRIVELGGVRPGDVVLEVGPGLGSLTLGLLAAG 69 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V+ +E D L + ++ + P +RL ++ DAL+V + P+ I+ANL Sbjct: 70 A-QVVAVEIDPVLAARLPRTVAERAPEAADRLTVVGADALRVRAADL--PAEPVSIVANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P S ++ Q EV +R+ A S YG SV W A Sbjct: 127 PYNVAVPVVLHLLAEL---PSLRSGLVMVQTEVADRMAAGPGSRTYGVPSVKLAWYGPAR 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 + + VF+P P V S ++ F +P+ + L + AF +RRKTLR +L Sbjct: 184 KVAAVPRAVFWPVPNVDSALVSFT-RTDPVAGVDRARLFAVVDAAFSQRRKTLRAALAGW 242 Query: 245 GGE-----NLLHQAGIETNLRAENLSI 266 G LL +AGI+ R E L + Sbjct: 243 AGSAERAGELLAEAGIDPKTRGEQLDV 269 >gi|242556502|pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi gi|242556503|pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 14/218 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ P Sbjct: 2 AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPY 60 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + N +EII DALKVD K FN +++ANLPY I + + F I Sbjct: 61 ANKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIKRG--- 111 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 ++ L++Q E +R+ A++ + YGRLSV R ++ + P F+P PKV S Sbjct: 112 --FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSA 169 Query: 205 VIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 ++ P+ E+ + F R K++R++L Sbjct: 170 IVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 207 >gi|297618729|ref|YP_003706834.1| dimethyladenosine transferase [Methanococcus voltae A3] gi|297377706|gb|ADI35861.1| dimethyladenosine transferase [Methanococcus voltae A3] Length = 275 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 14/222 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D N +KK + + V+EIG G G LT+ L + A+KV VIE D++ Sbjct: 14 KKLGQCFLKDKNFVKKAINRANLNNDDIVLEIGLGEGVLTKELAKV-AKKVYVIELDKRL 72 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ ++PN + II +DALKVD + FN +I+ANLPY I + + F ++ Sbjct: 73 EIFANEVIKEYPN-VSIIWEDALKVDLDSLDFN-----KIVANLPYQISSPITFKFLERK 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L++Q E +R+ ++++ YGRLSV + M+ + P F P PKV Sbjct: 127 KG---FDLAILMYQYEFAKRMAGKEDTKEYGRLSVAVQYSADVKMICKVPPTAFSPKPKV 183 Query: 202 TSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241 S ++ + NP L+ K + + F R KT+ ++L Sbjct: 184 DSAIVSLVKK-NPEYDVLDEKMFKNLLKALFQHRNKTVGKAL 224 >gi|284046698|ref|YP_003397038.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684] gi|283950919|gb|ADB53663.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684] Length = 273 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 113/255 (44%), Gaps = 15/255 (5%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + I P + +GQNFL+D NIL IA ++ V+EIG G G L++ L A V V+ Sbjct: 15 FGIRPNRELGQNFLIDSNILDVIARAAELAPEDVVLEIGGGLGVLSEHLAERAA-HVHVV 73 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ L D H + DA+++D P +++ANLPY I + Sbjct: 74 EIDRGLEDALHDALDPHAATTTLHMGDAMQLDLAALH--PQPTKVVANLPYGIAAGAILR 131 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + W + QKEVGER A+ + YG SV+ ++ +S VFF Sbjct: 132 TVEQLPHATGW---VAMVQKEVGERFAARPATDAYGIPSVIAQLACDVRVLRPVSRRVFF 188 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLL 250 P P V S ++ P +L+ Q AF RRKTL +S G L Sbjct: 189 PVPNVDSVLVGL---ERTGPAAPRALRSFVQGAFAHRRKTLAKSAGIAGVAAPDATRAAL 245 Query: 251 HQAGIETNLRAENLS 265 G ++RAE LS Sbjct: 246 EALGHPADVRAERLS 260 >gi|153952508|ref|YP_001398990.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei 269.97] gi|152939954|gb|ABS44695.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei 269.97] Length = 266 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 18/264 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ QKE+ E+ A++ + + L VL+ + ++FD+ P F P Sbjct: 119 EDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQAG 254 PKV S V+ I N + C +E+ K ++ F RK L +LK ++ +L G Sbjct: 175 PKVISAVMSLIKTKDFNEL-CEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSILG 233 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ N+R + ++ + +I + L D Sbjct: 234 LKENIRPHEICVDSYLKIYDKLKD 257 >gi|57640834|ref|YP_183312.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1] gi|62900463|sp|Q5JI54|RSMA_PYRKO RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|57159158|dbj|BAD85088.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1] Length = 279 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 16/232 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +I+ Y + P + +GQNFL+ +I+++ E + + TV+EIG G G LT L + A Sbjct: 7 SIIYKYNLHPNRDLGQNFLIVPDIIERNIERAEVGEKDTVLEIGPGLGVLTDPL-SKRAG 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV IEKD + IL+ PN +EII+ DALKV++ +F ++++NLPY I + Sbjct: 66 KVYAIEKDCRIVEILRR-EYNWPN-VEIIEGDALKVEWPEFN------KMVSNLPYQISS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F +S + +E L+FQ E ER+ A+ +Y RLS++ + +A ++ I Sbjct: 118 PVTFKLLSRE-----FERAVLIFQLEFAERMVAKPGDKNYSRLSLMVRAKARAELVERIG 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 F+P PKV S V+ P P ++ + + + F RR T+ +LK+ Sbjct: 173 KGAFWPRPKVDSAVVVLEP--KPPEERIDLNENLVKALFQHRRSTVSAALKK 222 >gi|296109078|ref|YP_003616027.1| dimethyladenosine transferase [Methanocaldococcus infernus ME] gi|295433892|gb|ADG13063.1| dimethyladenosine transferase [Methanocaldococcus infernus ME] Length = 269 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 13/221 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL+D N + K E + + V+EIG G G LT+ L A+KV VIE D+ Sbjct: 5 KKSLGQHFLVDKNFVYKAIEGANLKEDDKVLEIGLGKGILTEELCK-RAKKVYVIEIDKN 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISA 140 + +++ N L II DDALKV+ ++ +N +++ANLPY I + + F + Sbjct: 64 LESFANSLINKYKN-LNIIWDDALKVNLKEIDYN-----KVVANLPYQISSPITFKLLDR 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ L++Q E +R+ A++ + YGRLSV + A ++ + P F+P PK Sbjct: 118 G-----FDLSVLMYQLEFAKRMIAKEGTKDYGRLSVSLQAQANAEILCKVPPSAFYPRPK 172 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 V S ++ PH E + + AF R K L+++L Sbjct: 173 VWSALVKIEPHNKYKILNKEFFNNLVRGAFQHRNKFLKKAL 213 >gi|297797749|ref|XP_002866759.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312594|gb|EFH43018.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis lyrata subsp. lyrata] Length = 376 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 104/217 (47%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL I S TV+EIG G GNLT LL A+ V+ +E D++ Sbjct: 58 KSKGQHLLTNTRILDAIVRCSDVRPTDTVLEIGPGTGNLTMKLLE-AAQDVVAVELDKRM 116 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ S H ++L IIQ D LK DF +F ++AN+PYNI + L+ + Sbjct: 117 VEILRKRVSDHGFAHKLTIIQKDVLKTDFPQF------DLVVANIPYNISSPLVAKLVYG 170 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S TLL QKE R+ A + RL+V + D+S F P PK Sbjct: 171 SNT---FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPK 227 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+V+ P ++ T+ FGK+ KTL Sbjct: 228 VDSSVVMITPKEIIPDVNVQEWLAFTRTCFGKKNKTL 264 >gi|149922616|ref|ZP_01911044.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1] gi|149816502|gb|EDM75999.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1] Length = 301 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 136/282 (48%), Gaps = 19/282 (6%) Query: 1 MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT++ ++ S K +L+ + + P+K GQNFL + +IA ++G+ G TV+EIGAG G Sbjct: 1 MTIDLRAIPSPKQLLARHGLAPRKSWGQNFLHAFEVHLEIAAAAGAGPGSTVVEIGAGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNI 115 LT LL GA +V IE+D+ +L+ P + + DA+K D+ Sbjct: 61 TLTAHLLAAGA-EVDAIERDRDLCAVLRTELGALPG-FRLHEADAVKFDYGAHARALLEA 118 Query: 116 SSP-IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 P I+ NLPY + LLF + D W ++ QKEV +R+ + + YG Sbjct: 119 GKPRPAIVGNLPYQLTGALLFALLEYDAVTGPW---IVMVQKEVADRLCSPPGNKRYGGA 175 Query: 175 SVLTGWRTKATMMFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFG 231 + G R +A +P F P P+V S VI P P+ + + + + F Sbjct: 176 TAALG-RVRAIRKVCSAPAGCFLPPPRVDSAVIRLDPRPEPLGEVGDPKAYLHLVRTCFQ 234 Query: 232 KRRKTLRQSLKRLG----GENLLHQAGIETNLRAENLSIEDF 269 +RRKTL +L +G + + AG++ +R E L +F Sbjct: 235 RRRKTLANALLGVGDKASAQRWIAAAGLDPKIRPERLGPAEF 276 >gi|291567875|dbj|BAI90147.1| dimethyladenosine transferase [Arthrospira platensis NIES-39] Length = 274 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 25/277 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L I E++ ++EIG G G LT+ LL A V+ IE D+ Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRL--- 133 L + N L ++Q D L D F P +++AN+PYNI + Sbjct: 65 DLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIEG 123 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L I+ PF +++ LL QKEVG+R+ A+ +S +G LSV + + + + Sbjct: 124 LLGTIAKPALKPF-DAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182 Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 F+P PKV S V+ P PI P LE+L K+ F RRK LR +LK Sbjct: 183 AFYPPPKVDSAVVRLRPR--PIASPAQNPQLLETLVKL---GFSTRRKMLRNNLKSQVEP 237 Query: 248 NLLHQ----AGIETNLRAENLSIEDFCRITNILTDNQ 280 +L+Q I +RAE+LS++ + +++N+L Q Sbjct: 238 QILNQLLETLDINPQVRAEDLSLQQWVQLSNLLLAPQ 274 >gi|258654668|ref|YP_003203824.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233] gi|258557893|gb|ACV80835.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233] Length = 302 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K +GQNF+ D N +++I ++ V+E+G G G+LT + L A V +E D Sbjct: 26 PTKTLGQNFVHDGNTVRRIVAAADLRSTDHVLEVGPGLGSLT-LGLVDAAAAVTAVEIDP 84 Query: 81 QFFPILKDISSQH-PNR---LEIIQDDALKVDFEKF-------FNISSPIRIIANLPYNI 129 + +L H P R L +I DAL + ++ + P ++ANLPYN+ Sbjct: 85 RLAALLPTTVRAHAPGRYQALNVITADALTITADRLALTDPDRMAPADPTALVANLPYNV 144 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 ++ + ++ P +L ++ Q EV +R+ A S YG S W +A Sbjct: 145 AVPVILHLLA--EVPTLRRAL-VMVQAEVADRLAADPGSKTYGVPSAKLAWYGRAHRAGS 201 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246 +S VF+P P V S ++ F ++ + AF +RRKTLR +L G Sbjct: 202 VSRTVFWPVPGVDSALVAFDRSPTARTGDRSAVFAVIDAAFAQRRKTLRAALADWAGSPA 261 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITN 274 E +L +AGI+ + R E L I +F RI Sbjct: 262 FAEQILTRAGIDPSARGEVLGIAEFTRIAQ 291 >gi|198433957|ref|XP_002130387.1| PREDICTED: similar to transcription factor B1, mitochondrial [Ciona intestinalis] Length = 384 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 26/292 (8%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +L Y + +K + QNFLLD I + + + L G V E+G GPG +T+ +L Sbjct: 35 LLKMYNVRARKQLSQNFLLDPLITNRFVLCGAKDLAGHHVCEVGPGPGPITRSILQRKPE 94 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRII 122 ++ V+EKD +F P+LK ++ +R+ I+ D LK D + F S P + Sbjct: 95 RLTVVEKDHRFLPMLKYVADVSNDRMTIVHGDILKYDLSQCFPQELAKDWHKASPPFIVF 154 Query: 123 ANLPYNIGTRLLFNWIS----ADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVL 177 NLP+N+ L+F W D L L FQ+EV ER AQ RLSV Sbjct: 155 GNLPFNVSLPLIFKWFEQISRKDGMFKLGRIPLVLTFQREVVERFLAQTGDKQRCRLSVS 214 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKT 236 F I+ F P PKV V+ +P I + + + + ++ K Sbjct: 215 AQNFCDIDYKFIIAGGSFVPPPKVEVGVVKIVPKKTFDINLPFKKIDYVVKHTMHRKSKY 274 Query: 237 LRQSLKRLGG-------ENLLHQAGIETNLRA---ENLSIEDFCRITNILTD 278 + S+K + + + ++G++ R+ ENL D C + D Sbjct: 275 CKHSVKTMFPPKRSDLVDEIFRKSGVDPLTRSNELENLHFRDLCYAYEEIAD 326 >gi|163783970|ref|ZP_02178937.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] gi|159880766|gb|EDP74303.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] Length = 254 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 11/252 (4%) Query: 22 KKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+ L+ ++ KI ++ L+ I ++EIG G G LTQ +L +K+ IE D+ Sbjct: 7 KKKFGQHLLISEGVISKIVDTIDVKLEDI-IVEIGVGTGQLTQEILKRNPKKLYGIEIDE 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +PI+++ + N E+I+ D +V+ + + I+++ NLPYN+ + +L N + Sbjct: 66 TAYPIIEERFKEFEN-FELIKKDFFEVNLYEIAE-NQKIKLVGNLPYNVSSLILINTV-- 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + E + QKEV E++T + + +Y L++ + + + F P PK Sbjct: 122 -FYIDIIERTVFMLQKEVAEKLTTKPKTKNYTFLTIFIQTFFEVEYVMSVPARFFSPPPK 180 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S V+ P + ++ K F RRK LR + EN+L I R Sbjct: 181 VISAVVRMFPKKDYPKIDKKNYKNFVSSLFSNRRKMLRTKI----DENILKSLNIPPTAR 236 Query: 261 AENLSIEDFCRI 272 E L EDF R+ Sbjct: 237 VEELKPEDFLRL 248 >gi|117927388|ref|YP_871939.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B] gi|166221640|sp|A0LR93|RSMA_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117647851|gb|ABK51953.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B] Length = 290 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 24/281 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P+K GQ+F++D +L+KIA + +EIG G G+LT +LL Sbjct: 16 AADIRELARSAGVRPRKTFGQHFVVDPGVLRKIARYAELSSEDIALEIGPGFGSLTLVLL 75 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRII 122 L +++ +E D+ +L + I + P +RL ++ D L++ P ++ Sbjct: 76 PLVR-RLLAVEIDRVLAAVLPETIRRRCPAFADRLVVVHGDVLRLTTLP----DDPTVLV 130 Query: 123 ANLPYNIGTRLL---FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ANLPYN+ + F S T ++ Q+EV ER+ A SP YG S+ Sbjct: 131 ANLPYNVAVPAVLRVFERFSTVT------RTVIMVQREVAERLCADPGSPAYGAPSIKLR 184 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLR 238 W +A ++ +S VF+P P+V S V+ P+P ++ + AF +RRK LR Sbjct: 185 WYGRARIVGSVSADVFWPRPQVESAVVRIDRQPPPVPGVDRAAVFAVIDAAFAQRRKMLR 244 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 ++L G E + AG+ R E L++ DF R+ Sbjct: 245 RALSGWAGSAQAAEERILAAGLRPTDRGEALTLADFIRLAQ 285 >gi|254444818|ref|ZP_05058294.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235] gi|198259126|gb|EDY83434.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235] Length = 271 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 125/258 (48%), Gaps = 14/258 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNFL+D NI++K E + G V+EIG G G LT+ LL GA V +E D Sbjct: 19 PKKQLGQNFLIDGNIVRKSLELAQVTPGDHVVEIGPGLGTLTRALLDAGA-IVHAVEFDP 77 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + +++ PN L +I+ DAL + +I+ANLPY I T W++A Sbjct: 78 TLGAHVARLAADSPN-LHLIKGDALDHPLGD-LPPDTEYKIVANLPYAIST----PWMAA 131 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 +TL+ QKE +R A+ + +G +S+ D+S F+P P Sbjct: 132 VLESQLPSVMTLMLQKEAAQRYAAKAGTKQFGAISIFLHAAFDILPGHDVSGSCFYPKPD 191 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE------NLLHQAG 254 V ST++H P ES++ I +E F +RRK + L++ + N L G Sbjct: 192 VGSTLLHLRRKTTPHRFHPESIQLI-REVFQQRRKQISSLLRKAKTDAATRWLNSLTNIG 250 Query: 255 IETNLRAENLSIEDFCRI 272 I+ R E + E + ++ Sbjct: 251 IDPTARPEQIDAEKWIQL 268 >gi|226492680|ref|NP_001151385.1| LOC100285018 [Zea mays] gi|195646350|gb|ACG42643.1| dimethyladenosine transferase [Zea mays] Length = 337 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 22/286 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++++ S + +P+K +GQN+ L+ + +++ ++G DG V+EIG G G+LT LL Sbjct: 55 TIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEDGDVVLEIGPGTGSLTSALLQA 114 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119 GA V +EKD+ ++KD +L++I++D K EK+ Sbjct: 115 GA-TVFAVEKDKHMATLVKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKYGATKKLA 172 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178 ++ +NLP+N+ T ++ + + + L+ Q E R A SP Y ++V Sbjct: 173 KVASNLPFNVSTEVVKLLL---PMGDVFSVVVLMLQDETAVRFADASIQSPEYRSINVFV 229 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRK 235 + ++ F + FFP PKV VI F + + P +S + AF +RK Sbjct: 230 DFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 289 Query: 236 TLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR+SL+ + E L G+ R +L ++DF R+ N L Sbjct: 290 MLRKSLQHICSSSDIEAALDNIGLPVTARPSDLILDDFVRLHNHLA 335 >gi|123455450|ref|XP_001315469.1| dimethyladenosine transferase family protein [Trichomonas vaginalis G3] gi|121898147|gb|EAY03246.1| dimethyladenosine transferase family protein [Trichomonas vaginalis G3] Length = 295 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 11/187 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQN L ++K I ++ G ++EIG G GN+T+ +L+ +VI IEKDQ+ Sbjct: 21 LGQNILRSKVVVKNIVDAGEPRPGDKILEIGPGNGNMTEEMLSREGIEVIAIEKDQRMCV 80 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 LK +HPN L II D L VD +F I+N+PYNI + ++F ++ Sbjct: 81 ELKKKFPRHPN-LRIINADVLSVDLPEF------DLCISNIPYNISSAIVFKLLAR---- 129 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 P + L+ QKE GERI A+ +GRL++ T ++ ++S F P PKV S Sbjct: 130 PTFRRTVLMVQKEFGERIVARPGKDGWGRLAINTQLYASVKLVMNVSRKNFVPPPKVDSI 189 Query: 205 VIHFIPH 211 V+ P Sbjct: 190 VVSIQPR 196 >gi|239941894|ref|ZP_04693831.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 15998] gi|239988357|ref|ZP_04709021.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 11379] gi|291445344|ref|ZP_06584734.1| dimethyladenosine transferase dimethyltransferase [Streptomyces roseosporus NRRL 15998] gi|291348291|gb|EFE75195.1| dimethyladenosine transferase dimethyltransferase [Streptomyces roseosporus NRRL 15998] Length = 291 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 130/276 (47%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 15 IRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +VI +E D L + ++ P +R ++ DA+ V +P ++ANL Sbjct: 74 ADRVIAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P +L ++ Q EV +R+ A+ + YG SV W Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQSEVADRLAARPGNKVYGVPSVKANWYADVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLK- 242 I +VF+P+P V S ++ + P+ + + AF +RRKTLR +L Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPLATKASRAEVFAVVDAAFAQRRKTLRAALAG 247 Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 E L AGI R E L++E+F I Sbjct: 248 WAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283 >gi|237737101|ref|ZP_04567582.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817] gi|229420963|gb|EEO36010.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817] Length = 264 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 27/269 (10%) Query: 22 KKYMGQNFLLD-LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D +L+KI E S TV+EIG G G LT +LL A+KV+ +E D+ Sbjct: 6 KKKFGQNFLTDQREVLRKIMEVSNVQAEDTVLEIGPGEGALTALLLD-TAKKVVTVEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ +P + ++ +D L+ D + + + +++AN+PY I + ++ I Sbjct: 65 DLEKILRKKFDGNP-KYTLVMNDVLETDLRAY--VGAGTKVVANIPYYITSPIINKLIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + ++ QKEV ER+ A+K L++ + +A +F I F P PK Sbjct: 122 ---RDVIDEIYIMVQKEVAERVCAKKGKER-SVLTLAVEYYGEAEYLFTIPKEFFTPIPK 177 Query: 201 VTSTVI--------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 V S + +I ++ ++ K + F +RK L + LG Sbjct: 178 VDSAFMSIKLYKDNRYINQVDE-----DTFFKYVKAGFSNKRKNLLNNFSTLGYSKDELR 232 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276 +L +A I RAENLSIEDF R+ +I Sbjct: 233 VILAKAEIPETERAENLSIEDFIRLISIF 261 >gi|71028934|ref|XP_764110.1| dimethyladenosine transferase [Theileria parva strain Muguga] gi|68351064|gb|EAN31827.1| dimethyladenosine transferase, putative [Theileria parva] Length = 388 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 119/236 (50%), Gaps = 21/236 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KKY GQ+ L + +L KI +++ TV+EIG G GN T L+TL A+KV+ I+ Sbjct: 69 IFVKKY-GQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAIDV 126 Query: 79 DQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + +K+ Q LE+I+ DAL+ F KF +I +ANLP+ I + +F Sbjct: 127 DARMISEVKNRCFQLGYTNLEVIEADALRTTFPKF-DIC-----MANLPFQISSPFIFKL 180 Query: 138 ISADTWPPF----------WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +S P F ES L+FQKE ER+ A N YGRL++ T T + Sbjct: 181 LSHR--PLFRYLFHYYYFALESAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRI 238 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 +S F P PKV S V+ +P P+ + + F ++R+TLR K+ Sbjct: 239 CKVSAGSFNPPPKVESMVVKIVPREQPLVVDFGEWDGMIRICFSRKRRTLRSLFKK 294 >gi|237752126|ref|ZP_04582606.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC BAA-430] gi|229376368|gb|EEO26459.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC BAA-430] Length = 276 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 87/276 (31%), Positives = 138/276 (50%), Gaps = 33/276 (11%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVI 76 +I+ KK+ GQNFL + NIL I +S ++ I +IEIGAG G+LT LL+LG + Sbjct: 17 QILAKKHFGQNFLNNENILNAIIQSIPKIEKNIELIEIGAGLGDLTNKLLSLG--NITAY 74 Query: 77 EKDQQFFPILKD----------ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 E D++ P L++ ++ + + LEI + ++L+ + +F ++ANLP Sbjct: 75 EVDKELVPYLQERFKSALEFGHLNLEIGDVLEIWKGESLRK--QAYF-------LVANLP 125 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T L+ I P ++ QKEV ++ AQ ++ LSVL AT+ Sbjct: 126 YYIATLLVIKTIK----DPLSTGCVVMTQKEVAQKFCAQCGESNFSALSVLAQSVGMATL 181 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244 +FD+ P F P PKV S+V NP P LE L+ + + AF RKT+ +L + Sbjct: 182 LFDVPPTAFVPQPKVISSVFLLQKIANP-PSFKDLEHLESLLKVAFSAPRKTILNNLSKA 240 Query: 245 GGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + L I + R + +D+ R+ IL Sbjct: 241 YPKQAILDALESLQIAPSKRPHEIDTQDYHRLLKIL 276 >gi|308234122|ref|ZP_07664859.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829] gi|328943654|ref|ZP_08241119.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829] gi|327491623|gb|EGF23397.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829] Length = 315 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 22/282 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS + + K +GQNFL++ +++ I E + V+EIG G G L+ LL ++ Sbjct: 15 VLSSFGLYTKHRLGQNFLIEDSVIGHILELAHVQADDYVVEIGPGIGTLSCALLP-RVKR 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNI-----SSPIRIIA 123 + IE D+ +L + ++ ++ E+I DALKV + K F+ + +++IA Sbjct: 74 LCAIEADRVLPDVLAETLGEYADKFELISADALKVSADEIRAKLFSADRDGNACSVKLIA 133 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + ++ P L ++ Q EV +R+ AQ YG S + Sbjct: 134 NLPYQIAATAVLRYLE---MLPELNELIVMVQSEVAQRMAAQPAHKLYGAYSAKLALYAE 190 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLRQ 239 F ++P FFP+P V S VIH C + ++ AF +RRKTL Sbjct: 191 CVGGFKVAPSNFFPAPHVMSEVIHIQRRSADKQLCKAYERAYVARVIDAAFSQRRKTLLN 250 Query: 240 SLKRLG--GENLLHQAG---IETNLRAENLSIEDFCRITNIL 276 L G +++L I+ + R E L+ F + L Sbjct: 251 CLCACGFDKQDVLTACDTIQIDVHERGEKLTPSQFVELARAL 292 >gi|332158063|ref|YP_004423342.1| dimethyladenosine transferase [Pyrococcus sp. NA2] gi|331033526|gb|AEC51338.1| dimethyladenosine transferase [Pyrococcus sp. NA2] Length = 271 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 129/243 (53%), Gaps = 23/243 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I PK +GQ+F++ ++++K E++ + V+EIG G G LT L A+K Sbjct: 8 LLSKYGIRPKDTIGQHFIIVEDVIRKAVETADVNEKDVVLEIGPGLGFLTNELAK-RAKK 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ ILK+ N +EII+ DA+K+++ +F ++++N+PY I + Sbjct: 67 VYAIELDRKMIQILKN--EYKWNNVEIIEGDAIKLEWPEFN------KVVSNIPYQISSP 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + D +E +++Q E R+TA+ S +Y RLS++T ++ I Sbjct: 119 FTFKLLKKD-----FELAVVMYQLEFALRMTARPGSKNYSRLSLMTQALADVEIVMKIGR 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S ++ P + + E + + + F RRKT+ ++LK + +H Sbjct: 174 GAFYPRPKVDSALVVIRPRKDKV----ELNENLVKALFQHRRKTVSRALK-----DSIHM 224 Query: 253 AGI 255 GI Sbjct: 225 LGI 227 >gi|170782640|ref|YP_001710974.1| dimethyladenosine transferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157210|emb|CAQ02393.1| putative dimethyladenosine transferase (drug resistance) [Clavibacter michiganensis subsp. sepedonicus] Length = 305 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 130/270 (48%), Gaps = 27/270 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P K +GQNF++D N +++I + G V+E+G G G+LT LL GA V+ +E Sbjct: 34 VAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLLETGA-SVVAVEI 92 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDA-LKVDFEKFFNISS----PIRIIANLPYNIGTRL 133 D + ++ Q P + + Q DA L V E ++ P ++ANLPYN+ + Sbjct: 93 DGR-------LAEQLPITVALYQPDAVLTVVHEDALRVAELPGDPTALVANLPYNVSVPV 145 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + + P + ++ Q EVG RI A S YG SV W +S Sbjct: 146 LLHLLEHF---PAIRTGVVMVQAEVGHRIAAAPGSKVYGAPSVKAAWYGAWRTAGQVSRQ 202 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKR-LGGEN 248 VF+P P V S ++ F H P E L+K I AF +RRK LRQ+L LGG Sbjct: 203 VFWPVPNVDSVLVAFERHAEPFAS--EELRKRTFTIVDAAFQQRRKMLRQALAELLGGSE 260 Query: 249 ----LLHQAGIETNLRAENLSIEDFCRITN 274 LL G+ R E LS+ D+ R+ + Sbjct: 261 AASALLEAGGVAPTSRGEQLSVHDYLRVAH 290 >gi|206602077|gb|EDZ38559.1| Putative dimethyladenosine transferase [Leptospirillum sp. Group II '5-way CG'] Length = 256 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 130/229 (56%), Gaps = 22/229 (9%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G L+ L T+ A + ++E+D++ L+ S + + + I++ DA+++ F Sbjct: 12 IVEIGPGKGILSGYLATMTA-DLWLVERDRRLAEPLRTTFSGN-SGVRILEADAMELSFG 69 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 N SP +++NLPYNI L ++++D +PP + + L+FQ+EV +R+ A+ P Sbjct: 70 ---NDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDPD 123 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQ 227 YG LSV+T + + D++P F+P+PKV S+V+ + P+P C + +++ Sbjct: 124 YGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVLTVL----PLPVQDECTWAAISLSR 179 Query: 228 EAFGKRRKTLRQSLK-RLGGENLLHQAGI---ETNL---RAENLSIEDF 269 + F RRK+L ++L+ GE L ET+ + ++LS EDF Sbjct: 180 KLFCYRRKSLGRALRTAFPGEESLADGTFFQSETDFFSRKVDSLSPEDF 228 >gi|315501792|ref|YP_004080679.1| dimethyladenosine transferase [Micromonospora sp. L5] gi|315408411|gb|ADU06528.1| dimethyladenosine transferase [Micromonospora sp. L5] Length = 289 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 15/270 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+LT LL + Sbjct: 10 IRELAARIGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGSLTLALLPVA 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L + +++ RL + DAL+V + +P ++ANL Sbjct: 70 AH-VHAVELDPALAAALPETAARFAGAAAERLTVHPADALRVTADDLAG-PAPTALVANL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P L ++ QKEV +R+ A S YG SV W ++ Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWYARSR 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR-----Q 239 + P+VF+P P V S ++ F P P +++ + AF +RRKTLR Sbjct: 185 AAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRKTLRAALAGW 244 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDF 269 + L AG++ + R E+L++E F Sbjct: 245 AGGADRAAAALTAAGVDPSARGESLTVEQF 274 >gi|322369466|ref|ZP_08044031.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253] gi|320551198|gb|EFW92847.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253] Length = 294 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 21/233 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D ++ +I + ++ V+EIG GPG LT LL A +V VIE+D F L Sbjct: 31 QHFLVDDRVVDRIPTYADEMNLEHVLEIGGGPGVLTDRLLA-AADRVTVIERDPTFAEFL 89 Query: 87 KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 ++ S L +++ DAL V+ F IANLPY I + + F + Sbjct: 90 REEFRSECDDGGLTVVEGDALSVELPDFSAC------IANLPYGISSEIAFRLL------ 137 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 P + + L+FQKE ER+ A+ S YGRLSV ++ + F P P+V S Sbjct: 138 PLGKPMLLMFQKEFAERMAAESGSDDYGRLSVTAQHYADVRVVETVPREAFAPQPEVESA 197 Query: 205 VIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 ++ IP E+ + F +RRKT+R ++ N H +G++ Sbjct: 198 IVRTIPREPEYEVDDEAFFLDFVKAVFTQRRKTIRNGIR-----NTAHISGLD 245 >gi|145350183|ref|XP_001419496.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579728|gb|ABO97789.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 268 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 140/273 (51%), Gaps = 25/273 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++++GQ+FL+D +++ E++ G V+EIG G GNLT +L GAR V+ +EKD+ Sbjct: 2 RRWLGQHFLVDASVVTDAVEAARLGAGERVLEIGPGTGNLTNEMLKRGAR-VLAVEKDRN 60 Query: 82 FFPILKD-ISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLPYNIGTRLLF 135 L++ + ++ + E+++ D LK D FE+ + +++AN+PYNI T +L Sbjct: 61 LAEKLREGLCVEYKDAFELVEGDFLKWDGLATAFERATPETPRAKVVANIPYNITTDVLK 120 Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + DT +E + +FQ+EV +R + Y +SV + +K + + Sbjct: 121 VLLPMGDT----FEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRPVLRD 176 Query: 194 VFFPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 F P P V S +I F P L P+ + Q F ++RK LR +LK + E Sbjct: 177 CFMPPPNVESCLIGFKPKEPHELLPLNGTDKQFFTFVQACFAQKRKMLRNNLKAVCDEAT 236 Query: 250 LHQA------GIETNLRAENLSIEDFCRITNIL 276 + A G++ +R + L++E++ ++ N + Sbjct: 237 MDGAFALLDRGLK--VRPQELTMEEYVKLFNFV 267 >gi|294102068|ref|YP_003553926.1| dimethyladenosine transferase [Aminobacterium colombiense DSM 12261] gi|293617048|gb|ADE57202.1| dimethyladenosine transferase [Aminobacterium colombiense DSM 12261] Length = 276 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 7/260 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQNFL D NIL +I + + + ++EIGAG G LT+ L ++ +E D+ Sbjct: 9 KSSLGQNFLTDRNILGQIVKWAAIDESDILLEIGAGQGVLTRELALSPCSRIFALEIDKT 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + + RL II DDA+ D+E ++P +++AN+PYNI T L++ + A Sbjct: 69 LHTHLDPLEEEFRPRLSIIWDDAVTFDYETKLP-AAPTKVVANIPYNITTPLIWRLLEAF 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 S+ L+ Q+E R+ A N+ L + + ++ + P F+P P V Sbjct: 128 AGKGL-HSMILMVQREAALRLNASPNTKDRYPLGITLEIMGERKILRKVPPQAFYPQPAV 186 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----GIE 256 S VI N ++ + + + +F +RRKTL S R G +N L A Sbjct: 187 DSAVIEIKVQRNFDLPRQKNWRTLLRASFAQRRKTLINSASRNGVSKNHLIDAFSALHFN 246 Query: 257 TNLRAENLSIEDFCRITNIL 276 +LRAENL+ + + + ++L Sbjct: 247 PSLRAENLTGKQWLELWHML 266 >gi|284053579|ref|ZP_06383789.1| dimethyladenosine transferase [Arthrospira platensis str. Paraca] Length = 276 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 25/273 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L I E++ ++EIG G G LT+ LL A V+ IE D+ Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRL--- 133 L + N L ++Q D L D F P +++AN+PYNI + Sbjct: 65 DLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIEG 123 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L I+ PF +++ LL QKEVG+R+ A+ +S +G LSV + + + + Sbjct: 124 LLGTIAKPALKPF-DAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182 Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 F+P PKV S V+ P PI P LE+L K+ F RRK LR +LK Sbjct: 183 AFYPPPKVDSAVVRLRPR--PIASPAQNPQLLETLVKL---GFSTRRKMLRNNLKSQVEP 237 Query: 248 NLLHQ----AGIETNLRAENLSIEDFCRITNIL 276 +L+Q I +RAE+LS++ + +++N+L Sbjct: 238 QILNQLLETLDINPQVRAEDLSLQQWVQLSNLL 270 >gi|189346402|ref|YP_001942931.1| dimethyladenosine transferase [Chlorobium limicola DSM 245] gi|226729767|sp|B3EIC2|RSMA_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189340549|gb|ACD89952.1| dimethyladenosine transferase [Chlorobium limicola DSM 245] Length = 263 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 11/259 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K H +I KK +GQNFL D NI +KI SG+ ++EIG G G LT+ ++ + Sbjct: 3 KVEYKHTEIAVKKQLGQNFLTDRNITRKIVRLSGAKPEENILEIGPGFGALTKEIIEVCP 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V+EKD + I +++P +L +I+ D LK+D E + +RI+ N+PY+I Sbjct: 63 -SFTVVEKDPKLAAF---IRTEYP-QLNVIEADFLKIDLEAVTG-ARKLRILGNIPYSIT 116 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +LF + + + TL+ Q EV RI A ++ YG L+V + F + Sbjct: 117 SPILFRLLE---YRRCFMHATLMMQHEVAMRIVAVPSTKEYGILAVQLQAFFDVSYGFRV 173 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P P V S VI P + E + + AF +RRKTL +LK NL Sbjct: 174 GRKVFKPQPGVDSAVITITPKEHVPLSDPEGFSRFVRCAFHQRRKTLLNNLKE--SYNLD 231 Query: 251 HQAGIETNLRAENLSIEDF 269 RAE L+I++ Sbjct: 232 AVPSEVLKRRAEALAIQEL 250 >gi|145222523|ref|YP_001133201.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK] gi|315442971|ref|YP_004075850.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1] gi|226732599|sp|A4T6P3|RSMA_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|145215009|gb|ABP44413.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK] gi|315261274|gb|ADT98015.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1] Length = 314 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQNF+ D N +++I +S V+E+G G G+LT LL GAR V +E D Sbjct: 22 PRKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLGSLTLALLDRGAR-VTAVEIDP 80 Query: 81 QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L + H NRL ++ D L F++ P ++ANLPYN+ L + Sbjct: 81 VLATQLPTTIAAHSHSEVNRLTVLNRDILT--FKQSDMTEMPTALVANLPYNVAVPALLH 138 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P ++ ++ Q EV ER+ A+ YG S + +SP VF+ Sbjct: 139 LLAEF---PSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFFGNVRRYGMVSPTVFW 195 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE---AFGKRRKTLRQSLKRLGGE----- 247 P P+V S ++ + +P P E +++ + AF +RRKT R + G Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDTEFQEQVFELIDIAFAQRRKTSRNAFAEWAGSGNESA 255 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 + L A I+ + R E LSI DF R+ Sbjct: 256 SRLLAASIDPSRRGETLSINDFVRL 280 >gi|57505363|ref|ZP_00371292.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195] gi|57016499|gb|EAL53284.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195] Length = 260 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 128/268 (47%), Gaps = 20/268 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D IL KI ++ D ++EIG G G+LTQ LL + K I+ Sbjct: 2 IKAKKQYGQNFLHDKEILTKITQAIPK-DVKKIVEIGPGLGDLTQELLKISPVKAYEIDA 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLF 135 D F K + ++ DA ++ D +K+F ++ANLPY I ++L+ Sbjct: 61 DLIGFLRDKFQKELKEEKFILLHQDASELFCFDEDKYF-------LVANLPYYIASKLIL 113 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + L ++ QKE+ + A+ S +G L VL+ + ++FD+SP F Sbjct: 114 QALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPLCF 169 Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLH 251 P PKV S+V+ I L I C L+S K + F RK L +LK + L Sbjct: 170 NPPPKVVSSVMRLIKQKELKQI-CELDSFKSFLRICFKSPRKQLLSNLKAEKCKLLELFE 228 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 G++ N+R L + + +I L D Sbjct: 229 DLGLKENVRPHELCVNSYLKIYEKLKDQ 256 >gi|288930669|ref|YP_003434729.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642] gi|288892917|gb|ADC64454.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642] Length = 248 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 15/222 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K Q+ L D LKKI + D + V+E+G GPGNLT +LL A+KV IEKD++F Sbjct: 5 KSRDQHILKDKRYLKKIVSVAEVRDDV-VLEVGCGPGNLTSLLLK-KAKKVYGIEKDRRF 62 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +LK S + +LEII+ DALKV+F + ++N+P++I + L F + Sbjct: 63 VELLKKKFSGYIEEGKLEIIEGDALKVEF------PECDKFVSNIPFSISSPLTFKVLKH 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ + +QKE ER+ A++ S YGRLSV+ KA ++ I + F P PK Sbjct: 117 G-----FKLSVVTYQKEFAERLVAREGSKKYGRLSVIAKAYCKAEIVDIIPRYAFKPVPK 171 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V + ++ + LE + + F +RRK + L+ Sbjct: 172 VDAAIVKIVHEPEIKVENLEVFEDLVTFVFSRRRKKFSKILE 213 >gi|261402315|ref|YP_003246539.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7] gi|261369308|gb|ACX72057.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7] Length = 274 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 22/233 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ Sbjct: 4 PKKKLGQCFLIDKNFVNKAVESANLTKDDIVLEIGLGKGILTEELAK-HAKKVYVIEIDK 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139 + + N +EII +DALKVD FN ++IANLPY I + + F I Sbjct: 63 SLESYANKLKENY-NNIEIIWNDALKVDLNTLDFN-----KVIANLPYQISSPITFKLIK 116 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ L++Q E +R+ A++ + YGRLSV R + + P F P P Sbjct: 117 KG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEFITKVPPTAFHPKP 171 Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL----KRLG 245 K+ S +I LN +E+ + F R K++R++L K LG Sbjct: 172 KIHSALIKI--KLNKNKYQIENEIFFDNFLRAVFQHRNKSVRKALIDSSKELG 222 >gi|332297935|ref|YP_004439857.1| Ribosomal RNA small subunit methyltransferase A [Treponema brennaborense DSM 12168] gi|332181038|gb|AEE16726.1| Ribosomal RNA small subunit methyltransferase A [Treponema brennaborense DSM 12168] Length = 294 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 17/283 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +LK L + +K GQNFL++ N ++ ++ G TV E+G G G +T+ +L+ Sbjct: 18 ALKKFLDENGMAMQKKFGQNFLINGNARVRLIDTLDIGAGSTVWEVGPGLGAMTKEILSR 77 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEII--QDDALKVDFEKFFNISSPIRIIANLP 126 GA K+ V E D+ F + + I + D LK +++ P R NLP Sbjct: 78 GA-KLTVFEIDRGFASFIGKFFEPYARSGAFILREGDVLKT-WKQAAEQGIPDRFFGNLP 135 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI ++ + ISA ++ + QKEV ER+ A +Y SVL W Sbjct: 136 YNIAAAIVGDLISAGIR---FDKAVVTVQKEVAERMCAAAGDGNYSSFSVLCNWAYDVQP 192 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 + D++ F+P P V S + + PCC ++ + F RRKT++ +L Sbjct: 193 VMDLAGGNFWPRPNVDSRAV-LMTKKAAFPCCENPGHFMQLQRSLFVSRRKTVKNNLTAF 251 Query: 245 -----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 ++L AGI+ RAE L++E ++++I NQ I Sbjct: 252 YRNAEKAADVLSAAGIDPQQRAERLTVEQLLQLSDI--SNQHI 292 >gi|283953677|ref|ZP_06371208.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 414] gi|283794718|gb|EFC33456.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 414] Length = 265 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 18/264 (6%) Query: 22 KKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL+D ++L KI ++ +D I IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPKEMDNI--IEIGPGLGDLTQDLLKISQVKAYEIDND- 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNW 137 PILK + LE + + + + + F+ S P ++ANLPY + + ++ Sbjct: 62 -LIPILK---KKFQKELECGKFNLIHQNASEAFSASLDEKPYFLVANLPYYVASHIILKA 117 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + L ++ QKE+ E+ A++ + + L +L+ + ++FD++P F P Sbjct: 118 LEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGILSAMICERKILFDVNPQCFNP 173 Query: 198 SPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAG 254 PKV STVI I + C +E+ K ++ F RK L +LK + L L G Sbjct: 174 PPKVMSTVISLIKIKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTHKAKVLEVLSILG 233 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++ N+R + ++ + +I + L D Sbjct: 234 LKENIRPHEICVDSYLKIYDKLKD 257 >gi|67923799|ref|ZP_00517261.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501] gi|67854342|gb|EAM49639.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501] Length = 271 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 131/270 (48%), Gaps = 23/270 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L++I +++ + ++EIG G G LT+ LL L V+ +E D Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VDSVLAVELDW 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANLPYNIGTRL 133 L + N L ++Q D LK+D F KF I+ +++AN+PYNI + + Sbjct: 63 DLCKKLVKSFGNYDNFL-LLQGDILKLDITTEAQDFPKFLPIN---KVVANIPYNITSPI 118 Query: 134 LFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L + + P PF++ + LL QKEV +RI A + YG LSV + + D+ Sbjct: 119 LEKLLGRISSPKTPFYDLIVLLIQKEVAQRIVAYPGNKTYGALSVKMQYLADCNYICDVP 178 Query: 192 PHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RL 244 F P PKV S VI F P L + L+ + F RRK LR +LK RL Sbjct: 179 RKAFSPPPKVDSAVITFRPRVLANSAVDPKRLETLINLGFSNRRKMLRNNLKSLIDSDRL 238 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITN 274 G L + + +RAE L I + ++N Sbjct: 239 G--KFLREIDLNEQVRAEKLDINQWIALSN 266 >gi|224143306|ref|XP_002324910.1| predicted protein [Populus trichocarpa] gi|222866344|gb|EEF03475.1| predicted protein [Populus trichocarpa] Length = 386 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 12/223 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL I S TV+EIG G GNLT LL + A KV+ +E D++ Sbjct: 58 KSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKLLDV-ASKVVAVEIDKRM 116 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +L +H ++L +I++DALK +F KF ++AN+PY I + L+ + Sbjct: 117 VGVLNKRVKEHGFEDKLSVIREDALKAEFPKF------DLVVANIPYGISSPLVAKLVYG 170 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF S TLL QKE R+ A+ + RL+V + ++S FFP PK Sbjct: 171 AN--PF-RSATLLLQKEFARRLLAKPGDSEFNRLAVNVKLVADVEFVMNVSKRDFFPVPK 227 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S+V+ P L+ T+ FGK+ KTL + K+ Sbjct: 228 VDSSVVIIRPKDRIPDVNLDEWWAFTKNCFGKKNKTLGATFKQ 270 >gi|217076587|ref|YP_002334303.1| dimethyladenosine transferase [Thermosipho africanus TCF52B] gi|217036440|gb|ACJ74962.1| dimethyladenosine transferase [Thermosipho africanus TCF52B] Length = 261 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 136/266 (51%), Gaps = 26/266 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L YK+ KK +GQNFL +L I KKI ES+ G TV+EIG G G +T+ L+ GA V Sbjct: 7 LRQYKLNLKKSLGQNFLTNLEIAKKIVESANVQTGETVLEIGPGAGTITEFLIKKGAN-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--- 130 + +E D++ PIL D ++ N +I D LK D + + ++++N+PY+I Sbjct: 66 VAVEIDKRLTPIL-DRFNEFEN-FKIYYQDFLKFDMKL---LGENFKVVSNIPYSITGMI 120 Query: 131 -TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR--LSVLTGWRTKATMM 187 ++LF+ S + L+ QKEVG+R+ A+ P R L+V+ T + Sbjct: 121 IKKILFSKFS---------TAVLMVQKEVGDRLLAK---PGEDRSFLTVVVQTFTDIEKV 168 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 +S F P P+V S V+ F N +E + F K+RKTL +LK Sbjct: 169 LHVSKGNFVPPPQVDSVVLKFTRKENIYEKYNIEEFWTFVSKCFEKKRKTLLNNLKGF-V 227 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRI 272 +NL + + LR + LS +DF ++ Sbjct: 228 KNLDCFSEFDLKLRPQQLSNDDFLKL 253 >gi|289580774|ref|YP_003479240.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099] gi|289530327|gb|ADD04678.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099] Length = 281 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 24/237 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLL-TLGAR-KVIVIEKDQQF 82 Q+FL+D +L ++ +D T V+EIG G G LT LL T+GA ++ V+E+D Sbjct: 21 QHFLVDDRVLDRLPTYLTDIDADTSHVLEIGGGTGVLTDRLLETIGADDQLTVVERDPPL 80 Query: 83 FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L++ S RL +I+ DAL+VD +F SS ++NLPY + + + F + Sbjct: 81 AEFLQEEFSDAIDAGRLTVIEGDALEVDLPEF--TSS----VSNLPYGVSSEITFRLL-- 132 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P L L+FQ+E ER+ A+ N+ YGRLSV T A ++ I F P P Sbjct: 133 ----PEQRPLVLMFQQEFAERMVAEPNTSEYGRLSVSTQHYADAELVESIPKEAFSPPPA 188 Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 V S V+ +P E+ + + F +RRKT+R ++ N H +G++ Sbjct: 189 VQSAVVRLVPREPEYDVENEAFFLRFVKALFTQRRKTIRNGIR-----NTAHISGLQ 240 >gi|269836868|ref|YP_003319096.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM 20745] gi|269786131|gb|ACZ38274.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM 20745] Length = 293 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 23/273 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + + +L + P K +GQNFL D I+++IAE + V+E+G G G LT+ L Sbjct: 19 TFRDLLEEIGVRPSKALGQNFLHDTRIVQRIAEVADLGPDDLVVEVGPGLGILTRE-LAR 77 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A VI +E D + L++ S + I++ D L ++ + P ++ANLPY+ Sbjct: 78 RAGTVIAVELDTRLADHLRE--SLELENVRIVEGDILDLNLAELAG-KRPYHVVANLPYS 134 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + ++ + + +D P + ++ Q+EV ERI A+ P L+V + + F Sbjct: 135 VAAAVIEHVLESDHRP---GRMVVMVQREVAERIVAR--PPEMSVLAVAVQFYAVPRIAF 189 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSL--- 241 + P F P P+V S V+ +NP P + + + + F +RRK L +L Sbjct: 190 RVGPGAFVPRPRVDSAVLRL--DINPNPPLSGAERAAFFTLVRAGFSQRRKRLANALADA 247 Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFC 270 K + GE L AGI+ + RAE LS+E++ Sbjct: 248 LDLPKSVVGERLT-AAGIDPDRRAETLSVEEWL 279 >gi|187918451|ref|YP_001884014.1| dimethyladenosine transferase [Borrelia hermsii DAH] gi|119861299|gb|AAX17094.1| dimethyladenosine transferase [Borrelia hermsii DAH] Length = 278 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 147/284 (51%), Gaps = 14/284 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K +L I P+K GQN+L++ +I +K+ ++ + + EIG G G Sbjct: 1 MNINYNSINSIKRMLESKNIAPRKIWGQNYLINEHIREKLVDALEIKENERIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL A + V E D ++ IL + Q N ++I+ D LK ++ NI+ Sbjct: 61 AMTIILLK-KANFLTVFEIDPKYSEILNEQFGQLKN-FKLIKGDFLKTYKQEGQNIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI +++ IS + QKE+ +R+ A++ + +Y +VL Sbjct: 116 KIFSNLPYNIASKV----ISMLIEDEILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI F+P PKV ST + IP I ++ K+ + F RRK L+ Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKKEIK-NFKAFNKLVRTVFTSRRKKLKN 230 Query: 240 S-LKRLGGENLLHQAGIETNL--RAENLSIEDFCRITNILTDNQ 280 + + + +N+L++ ++ L R E +S+++F I+N LT N Sbjct: 231 TIINFIADDNILNEDFLKNFLDKRPEEISVKEFIAISNKLTTNH 274 >gi|88808454|ref|ZP_01123964.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 7805] gi|88787442|gb|EAR18599.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 7805] Length = 280 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 19/276 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQ++L D +L +I ++S GS D V+E+G G G LTQ LL A V +E Sbjct: 8 PRKRFGQHWLRDERVLDQILDASELGSDD--RVLEVGPGRGALTQRLLASTAAAVHAVEL 65 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+D + P + + D L+V + +++AN+PYNI LL I Sbjct: 66 DRDLVAGLQDRFADSPQ-FSLREGDVLEVPL-TLPDGQRATKVVANIPYNITGPLLERLI 123 Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P P ++ L LL QKEV ERI A+ + + LSV + + + P F Sbjct: 124 GRLDQPIDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAHCSSVCSVPPRCFQ 183 Query: 197 PSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLR------QSLKRLGGE 247 P PKV S VI P P P ++ + ++AF RRK LR Q L L E Sbjct: 184 PPPKVHSEVIRLDPLPQEQRPDPVTCRRVECLLKQAFLARRKMLRNTLSVSQPLCEL--E 241 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + +AGI+ R + ++ + ++ L A Sbjct: 242 EITLKAGIDLRQRPQEVAPNAWVKLARGLNQADSAA 277 >gi|302560209|ref|ZP_07312551.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000] gi|302477827|gb|EFL40920.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000] Length = 296 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 20/277 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++G TV+E+G G G+LT LL Sbjct: 15 VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDTVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L + R ++ DA+ V +P ++ANL Sbjct: 74 ADRVTAVEIDDVLAAALPATVAARMPARAGRFALVHSDAMHV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +++P +L ++ Q EV +R+ A S YG SV W + Sbjct: 131 PYNVAVPVLLHML--ESFPSIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLR---- 238 I +VF+P+P V S ++ + P P S ++ + AF +RRKTLR Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRAEP-PKTTASRREVFAVVDAAFAQRRKTLRAALA 246 Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 247 GWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 283 >gi|68536597|ref|YP_251302.1| dimethyladenosine transferase [Corynebacterium jeikeium K411] gi|119365018|sp|Q4JU23|RSMA_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68264196|emb|CAI37684.1| dimethyladenosine transferase [Corynebacterium jeikeium K411] Length = 316 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 140/300 (46%), Gaps = 38/300 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + ++ + + P K +GQNF+ D N ++KI +++ V+EIG G G+LT LL Sbjct: 13 NEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALLE 72 Query: 68 LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI--RII 122 GA V +E D + P + + +I DA++V + F + P+ ++ Sbjct: 73 AGA-SVTAVEIDPRLAAKLPATLEEQGAAEADVAVILKDAMEVAVQDFADAGRPLPTALV 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + + +P + + ++ Q EV +R+ A S YG SV G+ Sbjct: 132 ANLPYNVSVPVLLHML--EEFPSI-DRVLVMVQLEVADRLAAAPGSKIYGVPSVKAGFYG 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVI---HFIPHLNP------------IPCCLESL--KKI 225 I +VF+P+PK+ S ++ + P +E L +K+ Sbjct: 189 SVARAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQSGAEQFDADQGIEQLDAQKL 248 Query: 226 TQE-------AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +E AF +RRKTLR +L G E L AGI+ LR E LS E F ++ Sbjct: 249 RREVFDLADAAFLQRRKTLRAALSGHFGSGQAAEEALRSAGIDPTLRGEKLSTEQFVQLA 308 >gi|118473872|ref|YP_889677.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2 155] gi|118175159|gb|ABK76055.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2 155] Length = 297 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 127/269 (47%), Gaps = 27/269 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 P+K GQNF+ D N +++I +SG V+E+G G G+LT LL GAR V +E D Sbjct: 9 PRKAFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLGSLTLALLDRGAR-VTAVEIDP 67 Query: 80 ---QQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRL 133 +Q + D S NRL ++ D L + D E+ P ++ANLPYN+ Sbjct: 68 LLARQLPTTIADHSHSEINRLTVLNRDILTLMPGDLEE-----QPTALVANLPYNVAVPA 122 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + ++ P ++ ++ Q EV ER+ A+ YG S + +SP Sbjct: 123 LLHLLAEF---PSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFYGNVRRHGMVSPT 179 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246 VF+P P+V S ++ + +P P + + + F +RRKT R + G Sbjct: 180 VFWPIPRVYSGLVRIDRYETSPWPMDEAFRDEVFNLIDIGFAQRRKTSRNAFAEWAGGGN 239 Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRI 272 E LL A I+ R E LSI DF R+ Sbjct: 240 ESAERLL-AARIDPARRGETLSINDFVRL 267 >gi|116515030|ref|YP_802659.1| hypothetical protein BCc_089 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256884|gb|ABJ90566.1| dimethyladenosine transferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 275 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 133/266 (50%), Gaps = 26/266 (9%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P K +GQNFL + I+ +I +IEIG+G G LT + + +K+IV+E D Sbjct: 10 VPIKKLGQNFLQNKEIINQIINLININKNDNIIEIGSGLGALTFPICRI-IKKMIVLEID 68 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGT------ 131 + L S +L+II D +K DF FF++ R I NLPYNI T Sbjct: 69 EDLVFFLT--QSLFIKKLQIIIADIIKFDFCCFFSLQKYKKYRFIGNLPYNIATIFFLKT 126 Query: 132 -RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L+N I + +FQKEV +R+ A + YGRLS++ + K + ++ Sbjct: 127 IKFLYNIID----------MHFMFQKEVAKRLLATPGTKEYGRLSIIAQYFYKIETVINV 176 Query: 191 SPHVFFPSPKVTSTVIHFIP-HLNP---IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + FFP+PKV ST + F P + N I L+ IT+ +F RRK L +L L Sbjct: 177 NKFNFFPTPKVDSTFLRFTPKYFNSKYKIDKHFSVLELITRFSFQHRRKFLNNNLISLFS 236 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRI 272 L I+ RAEN+S+ +C++ Sbjct: 237 TKELISLDIDPYSRAENVSLIQYCKL 262 >gi|57236897|ref|YP_179850.1| dimethyladenosine transferase [Campylobacter jejuni RM1221] gi|205355725|ref|ZP_03222495.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8421] gi|62900460|sp|Q5HS85|RSMA_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|57165701|gb|AAW34480.1| dimethyladenosine transferase [Campylobacter jejuni RM1221] gi|205346502|gb|EDZ33135.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8421] gi|315059157|gb|ADT73486.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni S3] Length = 266 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F P Sbjct: 119 EDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255 PKV S V+ I + C +E+ K ++ F RK L +LK + L L G+ Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + N+R + ++ + +I + L D Sbjct: 235 KENIRPHEICVDLYLKIYDKLKD 257 >gi|300790057|ref|YP_003770348.1| dimethyladenosine transferase [Amycolatopsis mediterranei U32] gi|299799571|gb|ADJ49946.1| dimethyladenosine transferase involved in rRNA methylation [Amycolatopsis mediterranei U32] Length = 278 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 16/273 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I E + G V+E+G G G+LT LL G Sbjct: 10 IRGLAAELDVRPTKKLGQNFVHDPNTVRRIVELANVAPGDVVLEVGPGLGSLTLGLLATG 69 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V+ +E D + L K ++ + P L+++ DA++V + + P ++ANL Sbjct: 70 A-HVVAVEIDPKLAERLPKTVAERGPEVAGNLDVVGADAMRVTRGE---LGEPTALVANL 125 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ P + L ++ Q EV +R+ A S YG SV W A Sbjct: 126 PYNVAVPVVLHLLA--EVPSLRKGL-VMVQTEVADRMAAGPGSRIYGVPSVKLAWYGSAR 182 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + + VF+P P V S ++ F E L + AF +RRKTLR +L Sbjct: 183 KVAAVPRSVFWPVPNVDSALVAFERGDTTASEDRELLFGLVDAAFSQRRKTLRAALAGWA 242 Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 G LL AGI+ R E L + DF RI Sbjct: 243 GSAERAGELLTAAGIDPRTRGEQLDVHDFARIA 275 >gi|108801227|ref|YP_641424.1| dimethyladenosine transferase [Mycobacterium sp. MCS] gi|123178211|sp|Q1B416|RSMA_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|108771646|gb|ABG10368.1| dimethyladenosine transferase [Mycobacterium sp. MCS] Length = 294 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 123/265 (46%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 P+K GQNF+ D N +++I +SG V+++G G G+LT LL GA V +E D Sbjct: 22 PRKSFGQNFVHDANTVRRIVSASGVHRHDHVLKVGPGLGSLTLALLDRGA-HVTAVEIDP 80 Query: 80 ---QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 QQ + D S NRL ++ D L + N P ++ANLPYN+ L + Sbjct: 81 LLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN--QPTALVANLPYNVAVPALLH 138 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P S+ ++ Q EV ER+ A YG S + +SP VF+ Sbjct: 139 LLAEF---PTIRSVMVMVQAEVAERLAADPGGKDYGVPSAKVRFYGNVRRYGMVSPTVFW 195 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGEN---- 248 P P+V S ++ + +P P + ++ AF +RRKT R + G Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFAQRRKTSRNAFAEWAGSGNESA 255 Query: 249 -LLHQAGIETNLRAENLSIEDFCRI 272 L A I+ + R E L+I DF R+ Sbjct: 256 RRLLAASIDPSRRGETLAIADFVRL 280 >gi|225159370|ref|ZP_03725666.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium TAV2] gi|224802031|gb|EEG20307.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium TAV2] Length = 285 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 16/242 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L+ PK+++GQNFL+D NI++K E + G TV+E+G G G LT+ LL GA Sbjct: 9 RELLARLGHTPKRFLGQNFLVDGNIVRKSLELAAVSAGDTVVEVGPGLGTLTRALLIAGA 68 Query: 71 RKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKF---------FNISSPIR 120 V +EKD + + ++ + P L +++ DA++ S + Sbjct: 69 -NVWAVEKDAALYAHLAATLAPEFPGTLHLMEGDAVEFPLAGLKPAAAAATGTGSGSDFK 127 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T W+ A P + L+ Q E +R AQ S +G +S+L Sbjct: 128 IVANLPYAIST----PWMDAVLSGPLPLRMVLMLQLEAAQRYVAQPGSKLFGGISILLQS 183 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + +S F P P V S ++H + P E+ K + + F +RRK +R Sbjct: 184 AFEVAPGHRVSGACFHPRPDVDSCLLHLVRRAQPYVFRAET-KALIRACFQQRRKQIRPL 242 Query: 241 LK 242 L+ Sbjct: 243 LR 244 >gi|148926802|ref|ZP_01810481.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8486] gi|145844527|gb|EDK21634.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8486] Length = 266 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDTSEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F P Sbjct: 119 EDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255 PKV S V+ I + C +E+ K ++ F RK L +LK + L L G+ Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + N+R + ++ + +I + L D Sbjct: 235 KENIRPHEICVDLYLKIYDKLKD 257 >gi|94502395|ref|ZP_01308851.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833652|ref|YP_001597848.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS] gi|293977764|ref|YP_003543194.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN] gi|94451049|gb|EAT14018.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206141|gb|ABS30451.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS] gi|292667695|gb|ADE35330.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN] Length = 251 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 19/256 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K + Q FL D NI KKI S + T++EIG G G LTQ LL ++ E D+++ Sbjct: 5 KKLCQYFLHDKNIAKKIVNSISFKESKTIVEIGPGMGILTQYLLLNNKNLFLL-EIDKKY 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFNW 137 LK ++P II+++ +F + FF +I N PY I +++LFN Sbjct: 64 VEYLK---IKYP----IIKNNIFNKNFLIWNPKDFF--LDSFTLIGNFPYKISSQILFNI 114 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + P E + + FQKEV +RIT++ + YG+LSV+ K +F ++ VF P Sbjct: 115 IKYREYIP--ECIGM-FQKEVADRITSKHMNKSYGKLSVIMQAFYKIEYLFTVNNTVFIP 171 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 P+V S V+ + + + + KI + AF RRK L SLK+L + ++ + Sbjct: 172 KPRVKSAVVRMLKRKDNLLIKEDIFIKIVKTAFLYRRKKLYNSLKKLSFSSEFYKNPLLK 231 Query: 258 NLRAENLSIEDFCRIT 273 R E LS+ DF +T Sbjct: 232 K-RVEQLSVNDFILLT 246 >gi|281358611|ref|ZP_06245090.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548] gi|281314959|gb|EFA98993.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548] Length = 276 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 135/279 (48%), Gaps = 16/279 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L L + P + +GQNFLLD N+L I S G TV+E+G G G LT+ LL Sbjct: 4 QQLTAALESIGMRPGRGLGQNFLLDGNLLDYIVRLSAPQPGETVLEVGPGFGALTRKLLA 63 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GA V +E D + L+ + N + + DA +V++ + P R IANLPY Sbjct: 64 SGA-DVYAVEFDHRIAEYLR--THLEANNFHLTEADACRVNYLELLPQGRPFRAIANLPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I T + + P E++ + Q+E+GER+ A + YG LSV T R + + Sbjct: 121 SISTIFIARMLDLPAPP---EAMFFMLQREMGERLAAPVGTKDYGALSVRTQLRYEVKLE 177 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + P VFFP P+V S ++ F H + C L L + + F +RRK L + L Sbjct: 178 KIVPPEVFFPPPEVDSAIVSFRRHERYSADKELCRL--LPGVVKTVFAQRRKQLGKLLSN 235 Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ L I T R + LS++ + ++T +L D Sbjct: 236 NYGKEKALPALEALNIPTETRPDKLSVDQYAQLTRLLFD 274 >gi|86150521|ref|ZP_01068745.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597720|ref|ZP_01100953.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 84-25] gi|218563297|ref|YP_002345077.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|27151611|sp|Q9PLW7|RSMA_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85838973|gb|EAQ56238.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190024|gb|EAQ94000.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 84-25] gi|112361004|emb|CAL35805.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926902|gb|ADC29254.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315929676|gb|EFV08853.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 305] Length = 266 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F P Sbjct: 119 EDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255 PKV S V+ I + C +E+ K ++ F RK L +LK + L L G+ Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + N+R + ++ + +I + L D Sbjct: 235 KENIRPHEICVDLYLKIYDKLKD 257 >gi|320010315|gb|ADW05165.1| dimethyladenosine transferase [Streptomyces flavogriseus ATCC 33331] Length = 290 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 15 IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V+ +E D L ++++ P +R ++ DA+ V +P ++ANL Sbjct: 74 ADRVVAVEIDDVLAGALPATVAARLPGRADRFALVHSDAMLV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P +L ++ Q EV +R+ A+ + YG SV W Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQAEVADRLAARPGNKVYGVPSVKANWYADVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK- 242 I VF+P+P V S ++ PI + + AF +RRKTLR +L Sbjct: 188 RAGSIGRTVFWPAPNVDSGLVSLARRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAALSG 247 Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 E L AGI R E L++E+F I Sbjct: 248 WAGSAPAAEAALTAAGISPQARGEALTVEEFAAIAE 283 >gi|284931020|gb|ADC30958.1| dimethyladenosine transferase [Mycoplasma gallisepticum str. F] Length = 268 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 27/255 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K GQNFL+D NI+ KI E+ ++ V+EIG G G +++ L+ A IE D+ Sbjct: 16 PSKQRGQNFLIDQNIINKIVEAVIKINPSKVLEIGPGLGAISEQLIKRFADNYYAIELDK 75 Query: 81 QFF-----PILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134 + F +LKD I+ DAL++D++ F N+ ++ NLPYNI ++L+ Sbjct: 76 KLFHHLNEELLKD---------HILHADALEIDWKSIFDNLGDNPTMVGNLPYNISSKLI 126 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 +I + + ++ QKE+G R+ A+ NS Y S L + + + +I+ Sbjct: 127 KKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYSLNVSKIIEINETA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253 F P PKV ST++ F+ + E +K + F RRKT+ +LK L+ Q+ Sbjct: 182 FIPQPKVRSTLL-FLEKKD--IAFNEGYEKFLKLIFLSRRKTILNNLKNNYDSKLVIQSL 238 Query: 254 ---GIETNLRAENLS 265 G + RA+ LS Sbjct: 239 VSLGFKKTSRAQELS 253 >gi|203288028|ref|YP_002223043.1| dimethyladenosine transferase [Borrelia recurrentis A1] gi|201085248|gb|ACH94822.1| dimethyladenosine transferase [Borrelia recurrentis A1] Length = 274 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 26/287 (9%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K +L + I P+K GQN+L++ NI KI ++ + EIG G G Sbjct: 1 MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIRAKIIDALDIKKNEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T LL A + E D ++ IL + Q N ++I+ D LK ++ +I+ Sbjct: 61 AMTATLLN-KANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKKSIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I++NLPYNI ++++ I + + QKE+ +R+ A++ + +Y ++L Sbjct: 116 KIVSNLPYNIASKVISTLIEDEILI----HMVFTVQKELADRMIAREGNKNYSSFTILVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------KITQEAFGKR 233 + DI F+P PKV ST I IP C E++K K+ + F R Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLIP-------CKENIKNFQIFNKLIRTVFTSR 224 Query: 234 RKTLRQS-LKRLGGENLLHQAGIETNL--RAENLSIEDFCRITNILT 277 RK L+ + + + EN+L + ++ L R E +S+++F I N LT Sbjct: 225 RKKLKNTIINFIKNENILKKDFLKNFLDKRPEEISVKEFITIANKLT 271 >gi|242556505|pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ P Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYA 59 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + + N +EII DALKVD K FN +++ANLPY I + + F I Sbjct: 60 NKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIKRG---- 109 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ L++Q E +R+ A + YGRLSV R ++ + P F+P PKV S + Sbjct: 110 -FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAI 168 Query: 206 IHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 + P+ E+ + F R K++R++L Sbjct: 169 VKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 205 >gi|332296038|ref|YP_004437961.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium narugense DSM 14796] gi|332179141|gb|AEE14830.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium narugense DSM 14796] Length = 263 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 15/195 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K GQNFL+D NI KKI ES+ ++EIG G G LT+ L+ L IE D+ Sbjct: 6 PLKRYGQNFLVDQNISKKIIESALIEKEDLILEIGPGKGALTKYLVKL-PNDYFGIEVDR 64 Query: 81 QFFPIL-----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + +L KD++ +II D L+ D I + +I+NLPYNI + ++ Sbjct: 65 GLYDLLCKEFEKDLALCGK---KIILADVLETDLG---FIEKKVNVISNLPYNIASLIIV 118 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I + + +S+TL+ QKE+ +R+ A + YGRLSVL + +++F++ F Sbjct: 119 KMIKENIY---LKSMTLMIQKEMSQRLFAMPGAKEYGRLSVLVQNFFEGSIIFEVKESCF 175 Query: 196 FPSPKVTSTVIHFIP 210 +P PKV S VI IP Sbjct: 176 YPKPKVRSVVIRLIP 190 >gi|238062573|ref|ZP_04607282.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149] gi|237884384|gb|EEP73212.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149] Length = 291 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 131/274 (47%), Gaps = 15/274 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+LT LL Sbjct: 12 IRDLAARLGVNPTKKLGQNFVHDPNTVRRIVAAAGLAADDVALEVGPGLGSLTLALLPA- 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +E D L +++H RL + + DAL++D + +P ++ANL Sbjct: 71 AAHTHAVEIDPTLAAALPQTAARHAGPYAGRLTVHRADALRIDPAEL-AAPAPTALVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++A P L ++ QKEV +R+ A S YG SV W + Sbjct: 130 PYNVAVPVVLHLLAA--LPSLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWHAHSR 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR-----Q 239 + P+VF+P P V S ++ F P P E + + AF +RRKTLR Sbjct: 187 AAGRVPPNVFWPVPNVDSGLVAFTRREPPRPEVPRERVFAVVDAAFAQRRKTLRAALAGW 246 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 + L AG++ R E+L++E F I Sbjct: 247 AGGADRAAAALTAAGVDPGARGESLTVEQFAAIA 280 >gi|283956167|ref|ZP_06373652.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 1336] gi|283792321|gb|EFC31105.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 1336] Length = 266 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDASEAFNSSLDEKPYFLVANLPYYVASHIILRAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ QKE+ E+ A++ + + L VL+ + ++FD+ P F P Sbjct: 119 EDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQAGI 255 PKV S V+ I + C +E+ K ++ F RK L +LK ++ +L G+ Sbjct: 175 PKVISAVMSLIKTKDFDEFCEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSILGL 234 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + N+R + + + +I + L D Sbjct: 235 KENIRPHEICVNSYLKIYDKLKD 257 >gi|76799748|ref|ZP_00781834.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (Highlevel kasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Streptococcus agalactiae 18RS21] gi|76584901|gb|EAO61573.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (Highlevel kasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Streptococcus agalactiae 18RS21] Length = 171 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G LT+ L A Sbjct: 10 RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D ++ N ++++ D LK D + F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 Y I T +L + I + PF E ++ QKEV +RI+A N+ YG Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMIQKEVADRISAMPNTKAYG 170 >gi|120405750|ref|YP_955579.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1] gi|226732602|sp|A1TEH3|RSMA_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119958568|gb|ABM15573.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1] Length = 311 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 19/265 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 P+K GQNF+ D N +++I +S V+E+G G G+LT LL GA KV +E D Sbjct: 22 PRKSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLGSLTLALLDRGA-KVTAVEIDP 80 Query: 80 ---QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 Q + S NRL ++ D L F++ P ++ANLPYN+ L + Sbjct: 81 VLANQLPTTIAAHSHSEVNRLTVLNRDILT--FKQSDMTEMPTALVANLPYNVAVPALLH 138 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P ++ ++ Q EV ER+ A+ YG S + +SP VF+ Sbjct: 139 LLAEF---PSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFFGNVRRYGMVSPTVFW 195 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQ---EAFGKRRKTLRQSLKRLGGE----- 247 P P+V S ++ + +P P E +++ + AF +RRKT R + G Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDPEFRQQVFELIDVAFAQRRKTSRNAFAEWAGSGNESA 255 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 + L A I+ + R E LSI DF R+ Sbjct: 256 SRLLAASIDPSRRGETLSINDFVRL 280 >gi|158334916|ref|YP_001516088.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017] gi|189028799|sp|B0CC89|RSMA_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158305157|gb|ABW26774.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017] Length = 269 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 15/270 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L +L++I ++ ++EIG G G LT+ LL A+ V+ +E D+ Sbjct: 4 PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLA-QAQSVVSVELDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + N +++ D L +D P +++AN+PYNI + +L + Sbjct: 63 DLCKSLRHTFNDQEN-FTLLELDFLNLDVAAELTEPLPNKVVANIPYNITSPILSKLLGR 121 Query: 141 DTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P P +E++ LL QKEV +R+ A+ S + LSV + + ++ + F P+ Sbjct: 122 IDAPAQPVYETVVLLIQKEVADRLVAEPGSKIFNGLSVRSQYLADCELICPVPASAFKPA 181 Query: 199 PKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253 PKV S V+ P P P L +L K+ F RRK LR +LK L + L + Sbjct: 182 PKVESAVVRLTPRPYPQPVQNPQWLSTLLKV---GFSSRRKMLRNNLKSLVDRDQLSECL 238 Query: 254 ---GIETNLRAENLSIEDFCRITNILTDNQ 280 I RAE+LS+ + +++ + +Q Sbjct: 239 NTLNISLQARAEDLSVTQWIALSDSVHPSQ 268 >gi|332982498|ref|YP_004463939.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON] gi|332700176|gb|AEE97117.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON] Length = 299 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 135/288 (46%), Gaps = 26/288 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ ++ Y P K MGQNFL++ L I + V+EIG G G LT + L+ Sbjct: 12 AVQRLIDRYNFKPNKAMGQNFLINKEALNAIVNGADISAEDEVLEIGPGLGTLT-LKLSE 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL----KVDFEKFFNISSPIRIIAN 124 A V +E D++ P+LK + Q + II+ D L + ++ S I ++AN Sbjct: 71 RAAHVTAVEVDKRIIPLLKQ-TLQDVGNVSIIEGDFLNPMVAEEIKECLAGKSAI-VVAN 128 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS------PHYGRLSVLT 178 LPY I T +L + I + L+ QKEV R+ AQ S YG LS+ Sbjct: 129 LPYYITTPVLMDIIENYIM---IKRAVLMMQKEVAYRVVAQPGSRLSGSVKDYGVLSISV 185 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + ++ ++ F PSP V S V+ P + + + AFG+RRKT Sbjct: 186 QYYMDPQILLEVPRSDFLPSPDVDSAVVRLDRRDKPAVDVQDERMFFSLVKAAFGQRRKT 245 Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L +L + G + +L +A I+ N RAE LS+++F I N L Sbjct: 246 LFNALAGGLGYPLGKDGLKRVLERAHIDGNRRAETLSLQEFADIANEL 293 >gi|325108886|ref|YP_004269954.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305] gi|324969154|gb|ADY59932.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305] Length = 305 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 32/295 (10%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 KSH L+ +L+ Y I P+ +GQN+L+DLNI++ I + V+E+G G G +T + Sbjct: 9 KSH-LQQLLAQYGINPRGDLGQNYLIDLNIIEFIVSQAHLGPNDVVLEVGTGTGGMTAFM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------------VDFEKFF 113 + A V+ +E D + D H N L ++ DAL+ + + Sbjct: 68 VQQAAH-VVTVEVDTNMHRMASDQLGHHEN-LTLLHKDALRNKNNFAPEVLEVLQEQLAV 125 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + + ++ +ANLPYNI T L+ N ++ + WE + + Q E+G R+ A YG Sbjct: 126 DPARRLKFVANLPYNIATPLVSNLVATELP---WERMVVTIQLELGLRMGAGPGKSTYGA 182 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEA 229 LS + ++ + P VF+P PKV S V+ +P NP + +K + Sbjct: 183 LSAWLQAQAFVKVLKKLPPTVFWPRPKVDSAVVRLVP--NPAGRKEIADRKFFHDFVRRV 240 Query: 230 FGKRRKTLRQSL-----KRLGG---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 F +RRK LR L K L + +L + N RAE L ++N L Sbjct: 241 FLQRRKLLRSVLVGMYRKELSKPLVDEVLAAMELGPNTRAEELPPPQLVELSNRL 295 >gi|308176575|ref|YP_003915981.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117] gi|307744038|emb|CBT75010.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117] Length = 295 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 132/277 (47%), Gaps = 20/277 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + I P K +GQNF++D N +++I ++ TV+E+G G G+LT ++ Sbjct: 12 ATEIRRLAEELGIRPTKTLGQNFVIDGNTIRRIVAAAKVDPSETVLEVGPGLGSLTLGIM 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ-HPNR---LEIIQDDALKVDFEKFFNISSPIRII 122 A KV+ +E D L ++ P R L +I DA+KV P ++ Sbjct: 72 DAAA-KVVAVEIDPPLAKRLPQTMAEFRPGREDDLTVILSDAMKVTELP----GEPTSLV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + + +P L ++ Q EV +R+ A + YG SV W Sbjct: 127 ANLPYNVAVPVVLHLL--EHFPSIRNGL-VMVQDEVADRMAATPGNKIYGVPSVKGAWYG 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 I +VF+P+PK+ S ++ F + P E I AF +RRKTLR + Sbjct: 184 TMRKAGVIGMNVFWPAPKIHSGLVGFTRDKDRSDAPDRREVF-AIIDAAFAQRRKTLRAA 242 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 L G E +L AGI+ R E L IE + I Sbjct: 243 LSGWAGSGARAEQILVAAGIDPKERGEKLDIEQYIDI 279 >gi|72382118|ref|YP_291473.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A] gi|119365047|sp|Q46L58|RSMA_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72001968|gb|AAZ57770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A] Length = 291 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L+ ++ IP+K GQ++L D +L +I +++ V+E+G G G LT+ L+ AR + Sbjct: 7 LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFI 66 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGT 131 IE D+ LK S H N+ + + D L +D E I+ +++AN+PYNI Sbjct: 67 QAIELDRDLVVGLKKRFS-HQNKFSLREGDILSAPLDAENGLTIN---KVVANIPYNITG 122 Query: 132 RLLFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LL I P +E+L LL QKEV +R+ A+ + ++ LSV K + D Sbjct: 123 PLLKRLIGELRKAPDNCFETLVLLMQKEVAQRLLARPGTSNFSALSVRIQLLAKCQDVCD 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL 241 + F P+PKV S V+ P + P E L+K+ + AF RRK LR ++ Sbjct: 183 VPSKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTI 237 >gi|288575051|ref|ZP_06393408.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570792|gb|EFC92349.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 268 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 14/253 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PK +GQNFL++ +I+++ E + ++EIG G G LT+ +L+ + IE D+ Sbjct: 9 PKTSLGQNFLINRDIVRRTVERADITKKDVILEIGPGQGVLTREILSSPCSHLHSIEIDR 68 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P LKDI + +R + D +K + + + P +++AN+PY++ T L+++ I Sbjct: 69 RLEPFLKDI--EEDDRFSLHWGDGVKFPYGELRPV--PSKVVANIPYHVTTPLIWS-ILE 123 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L+ QKE +R+ AQ + L + A +SP F P PK Sbjct: 124 KLAPSGLSYMILMVQKEAADRLVAQACTKERYPLGITLAAMGSAKTYMKVSPGSFRPIPK 183 Query: 201 VTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQA 253 V+S ++ I +P ++L +K+ + F +RRK L +L LG + +L+ ++ Sbjct: 184 VSSALVELTIERRRDLPS--DNLWRKVLKAGFSQRRKKLANNLVSLGIKKEEILDLMDRS 241 Query: 254 GIETNLRAENLSI 266 GI + RAE LS+ Sbjct: 242 GIPSEARAETLSV 254 >gi|256833167|ref|YP_003161894.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603] gi|256686698|gb|ACV09591.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603] Length = 600 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 137/294 (46%), Gaps = 24/294 (8%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ +H ++ + + P K GQNFL D ++KI SG V+E+G G G+L Sbjct: 7 TLLGPAH-IRELAQECGVTPTKTKGQNFLHDAGTVRKIVRLSGVAPTDQVLEVGPGLGSL 65 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQ-HPN---RLEIIQDDALKVDFEKFFNISS 117 T LL G V IE D P L + P RL ++ +AL+V Sbjct: 66 TLGLLDAGCH-VTAIELDDVLAPHLAGTVERFQPGASQRLTVVHGNALEV---TELPDPQ 121 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P ++ANLPYN+ +L + + +P + ++ Q+EV +R+ A S YG S Sbjct: 122 PTALVANLPYNVSVPILLTIL--ERFPTITRVM-VMVQREVADRLVAPPGSRTYGTPSAK 178 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKR 233 W A + +VF+P+P V S +++ +P + ++ + AF +R Sbjct: 179 LAWYGTANRAMKVGRNVFWPAPNVDSALVYLD---RTMPVTTSASQRDVFAVIDAAFAQR 235 Query: 234 RKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 RKTLRQ+L + G + +L AG+ R E L+I DF RI +T + + Sbjct: 236 RKTLRQALAGIAGNSQRASTILEAAGVPPTARGEQLTIHDFARIAEAMTPKEPV 289 >gi|226500226|ref|NP_001150423.1| LOC100284053 [Zea mays] gi|195639144|gb|ACG39040.1| dimethyladenosine transferase [Zea mays] Length = 354 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 20/268 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + ++ I +G TV+EIG G GNLT+ LL G + V+ +E D + Sbjct: 26 EKSKGQHILRNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPR 85 Query: 82 FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L HP +RL++IQ D LK D +F+I +AN+PY I + L F +S Sbjct: 86 MVLELNRRFQGHPLSSRLKVIQGDVLKCDLP-YFDIC-----VANIPYQISSPLTFKLLS 139 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + ++FQ+E R+ AQ Y RLSV ++ + + + + F P P Sbjct: 140 ---HRPIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNFRPPP 196 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-------- 251 KV S+V+ P P + + + F ++ KTL K+ LL Sbjct: 197 KVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNKTLGSLFKQKRVLELLEKNYKTMQS 256 Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278 Q + + E +S +D + N++ D Sbjct: 257 LQTVQDAEMGEEKMSADDVALLANMVED 284 >gi|222823065|ref|YP_002574638.1| dimethyladenosine transferase [Campylobacter lari RM2100] gi|222538286|gb|ACM63387.1| dimethyladenosine transferase [Campylobacter lari RM2100] Length = 273 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 126/267 (47%), Gaps = 12/267 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK+ GQNFL D +++ KI ++ D ++EIG G G+LTQ LL + + E Sbjct: 2 IKAKKHFGQNFLCDKSVVDKIIQAIPK-DTKNIVEIGPGLGDLTQELLKIPQAHIRAYEI 60 Query: 79 DQQFFPIL-KDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ PIL K ++ E+I +A F++ ++ANLPY I T L+ Sbjct: 61 DKDLIPILNKKFQNEIEGGNFELIHQNASDA-FDQGSLSDKEYFLVANLPYYIATNLILK 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKEV ++ A + ++ L VL + M+FDI P F Sbjct: 120 ALEDQNCL----GLIVMVQKEVAQKFCANEKESNFSALGVLCALICQRQMLFDIQPQSFN 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQ 252 P PKVTS V+ I + C +E+ K+ + F RK L + K + L Sbjct: 176 PPPKVTSAVMKLIKTTHYQQKCENIEAFKEFLRACFQNPRKQLLSNFKNKKEKILKAFEA 235 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 I + RA +S++ + +I + L D+ Sbjct: 236 LDISSTSRAHEISVDSYLKIYDYLKDD 262 >gi|313125978|ref|YP_004036248.1| dimethyladenosine transferase [Halogeometricum borinquense DSM 11551] gi|312292343|gb|ADQ66803.1| dimethyladenosine transferase [Halogeometricum borinquense DSM 11551] Length = 289 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 35/266 (13%) Query: 27 QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q+FL+D +L +I D V+E+G G G LT LL + A +V V+E+D + Sbjct: 36 QHFLVDDRVLDRIPSYLPEDTDTSHVLEVGGGTGALTDRLLRV-ADRVTVVERDTRLAEF 94 Query: 86 LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L++ + +RL I++ DAL++D +F ++NLPY I + + F + Sbjct: 95 LREEFADAIEADRLTILEGDALEIDLPEF------TACVSNLPYGISSEITFRLL----- 143 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P L L+FQKE GER+ A+ + YGRLSV ++ + F P+P V S Sbjct: 144 -PRGVPLVLMFQKEFGERMAAETGTDEYGRLSVSAQHYGDVEVVETVPKEAFDPAPAVES 202 Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET----- 257 V+ P E+ + F +RRKT+R ++ N H +G+E Sbjct: 203 VVVRVTPRAPDYEVDDEAFFLDFVKALFTQRRKTIRNGIR-----NTAHISGLEDPEAVV 257 Query: 258 --------NLRAENLSIEDFCRITNI 275 RA N+S E F +T + Sbjct: 258 EAADEDVLRKRAGNMSPEAFAALTAL 283 >gi|154249153|ref|YP_001409978.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1] gi|154153089|gb|ABS60321.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1] Length = 261 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 126/264 (47%), Gaps = 28/264 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL +KI S T++EIGAG G LT L GA V IE D + Sbjct: 4 KKSLGQNFLSSEIYAEKIVGLSNVEKNDTILEIGAGAGTLTVALAKTGAT-VFAIEIDNR 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNW 137 PILK+ ++ N ++II +D L++D N + I+N+PY I +LLF Sbjct: 63 MEPILKERLEKYDN-VKIIFEDFLEMDISFLPN---GYKCISNIPYYITAPILKKLLFTN 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 S LT++ QKEVGER+ + S + G L+V+ + + F P Sbjct: 119 FSM---------LTIMMQKEVGERLLEKPGSSNRGFLTVVLQTVADVEKLLLVPKSAFVP 169 Query: 198 SPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLRQSLKRLGG-----EN 248 +P V S V+ I P ES +F ++RKT+ +LK +G EN Sbjct: 170 NPDVDSIVLK-ITKKKEFPFSNLSEFESYWTFVSNSFSQKRKTISNNLKSMGMAKEEIEN 228 Query: 249 LLHQAGIETNLRAENLSIEDFCRI 272 LL I+TN R E LS E+F + Sbjct: 229 LLKNLNIKTNARPEELSTEEFLSL 252 >gi|293364052|ref|ZP_06610788.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2] gi|292552542|gb|EFF41316.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2] Length = 259 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 134/266 (50%), Gaps = 19/266 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D N+L +I + L+ V+EIG G G+LT+ LL A V E D+ Sbjct: 8 AKKRFGQNFLKDQNVLNRIV-NLVDLENQNVLEIGPGRGDLTKKLLQ-KANFVKAYEIDR 65 Query: 81 QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L ++I +H +++ +D L+ D N IIAN+PY I T ++F + Sbjct: 66 DLVRFLNEEIKEEH---FQLVPNDFLQEDISGLKNYW----IIANIPYYITTEIIFKIL- 117 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + F+ ++ L+ QKEV ERI A+KNS Y +LS+ + + F + + F P+P Sbjct: 118 -ENIQNFYGAI-LMVQKEVAERIEAKKNSSEYSKLSLTCQYYSTTKKEFIVKANSFIPAP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255 KV S +I + N + + + + F +RRK L SLK+ E+ + + Sbjct: 176 KVDSAIISLTFNKNRVWN--KEINNFFKLCFLQRRKKLSFSLKQKYSLEKIESSFEKLDL 233 Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281 TN R + L +E ++ N L D ++ Sbjct: 234 TTNTRIQELDLEKVLQLYNYLEDKEN 259 >gi|223938516|ref|ZP_03630408.1| dimethyladenosine transferase [bacterium Ellin514] gi|223892778|gb|EEF59247.1| dimethyladenosine transferase [bacterium Ellin514] Length = 278 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 12/277 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K +K IL+ +I K +GQNFL D N L++IA+ + V+EIG G G LT++L Sbjct: 2 KLTEMKQILASGQIQLTKSLGQNFLHDQNQLRRIADGAELSKSDKVLEIGPGLGPLTELL 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + A +V+ IEKD++ L+ + ++ DAL+ + + SS +++ANL Sbjct: 62 IE-RAGEVLAIEKDRRLVDFLEKRYANTAG-FTLLHQDALEYIRREPQDWSS-WKLVANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY++ + +L + + P + + Q EV R+ AQ + YG LS+L + Sbjct: 119 PYSVASPILVDLAQSKGCPRM---MVVTLQLEVARRLVAQTDDDDYGVLSLLIQLYYEPQ 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243 F I FFP+P V S + P+ ++ ++ + A +RRK + + LK+ Sbjct: 176 GHFKIPSDCFFPAPDVDSACVVLKRREQPLLTSELNDAFARLVKLALSQRRKMMLKLLKQ 235 Query: 244 LGGENLLHQAGIETNL----RAENLSIEDFCRITNIL 276 L A E L RAE +S+E F R+T IL Sbjct: 236 NWPVEKLTAAFEELQLSPQIRAEKVSLEQFVRLTQIL 272 >gi|116074644|ref|ZP_01471905.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9916] gi|116067866|gb|EAU73619.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9916] Length = 298 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 11/253 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L I E+SG V+E+G G G LT+ LL A V +E D+ Sbjct: 30 RKRFGQHWLRDERVLDHILEASGLQADDRVLEVGPGRGALTERLLRSPAAAVHAVELDRD 89 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+D R + + D L V + +++AN+PYNI L+ I Sbjct: 90 LVAGLRDRFGSD-GRFSLREGDVLDVPL-TLPDEGLATKVVANIPYNITGPLMERLIGRL 147 Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P P ++ L LL QKEV ERI A+ + LSV + + + + P F P P Sbjct: 148 DRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLAQCSTVCPVPPRCFQPPP 207 Query: 200 KVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH----Q 252 KV S VI P P P ++ + ++AF RRK LR +L L L Sbjct: 208 KVQSEVIRLDPLPMQQRPEPALARRVESLLKQAFLARRKMLRNTLAGLCPPEQLQMLAAA 267 Query: 253 AGIETNLRAENLS 265 AGI+ R + ++ Sbjct: 268 AGIDLQQRPQEVA 280 >gi|167041696|gb|ABZ06440.1| putative ribosomal RNA adenine dimethylase [uncultured marine microorganism HF4000_010I05] Length = 312 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 19/265 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I P+K +GQ+FL D +L +I ++ V+EIG G G LT+ L+ GA +V+ IE Sbjct: 35 RIRPRKSLGQHFLADGRVLTRIVNAAEIASQELVLEIGPGQGALTRRLVDRGA-QVVAIE 93 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L D PN L +++ DA KVD + + +++ NLPY ++ + Sbjct: 94 LDHHLASTLPDRLGNPPN-LTVVEADARKVDLKSLLGSGAVYKVLGNLPYYAANPIIRRF 152 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + A P + + + Q+EV + A G LSV + + ++ + P F P Sbjct: 153 LEAPNQP---QLMVVTLQQEVARSMAAAPGK--MGFLSVAVQYYAETKVVCTVPPRAFRP 207 Query: 198 SPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLRQSLKRLGG------E 247 PKVTS V+ + P+P +E+ + + F RK LR SL G Sbjct: 208 PPKVTSAVVRL--DIRPVPPVDVAEVEAFFALVRAGFASPRKQLRNSLAHGLGVSTVAIA 265 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 +LL ++ + R LS+ ++ I Sbjct: 266 HLLDSLNLDGSRRPATLSMVEWAVI 290 >gi|297157778|gb|ADI07490.1| dimethyladenosine transferase [Streptomyces bingchenggensis BCW-1] Length = 301 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 15 IRELAARLGVRPTKQRGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L + +R E++ DAL + +P ++ANL Sbjct: 74 ADRVTAVEIDDVLAAALPSTVQERLPGRADRFELVHSDALHI---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + D +P +L ++ Q EV +R+ A S YG SV W + Sbjct: 131 PYNVAVPVLLHML--DRFPTIERTL-VMVQAEVADRLAAAPGSKVYGVPSVKAAWYAEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR----- 238 I +VF+P+P V S ++ + P+ + + ++ AF +RRKTLR Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRPAPLRTTATKDQVFRVIDAAFAQRRKTLRAALAG 247 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AGI R E L++E F I Sbjct: 248 WAGSAAAAEAALTAAGISPQARGEALTVEQFAAIAE 283 >gi|221195710|ref|ZP_03568764.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626] gi|221184476|gb|EEE16869.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626] Length = 328 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 130/305 (42%), Gaps = 37/305 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + + L + + K +GQNFL++ NI++KI + V+E+G G G LT +L Sbjct: 16 RATRETLEAFGLATKHRLGQNFLVEDNIIRKIIRLAELTSDDVVLEVGPGLGTLTVAMLD 75 Query: 68 LGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKV------------------- 107 R V IE D++ +L + H + + DALK Sbjct: 76 Y-VRAVCSIEADRELEGVLAATCKEPHQDSFVLCMGDALKATPQLVGDAYASLGVFADTQ 134 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 E + P + ++NLPY + L+ + T E ++ Q EV +RI A+ Sbjct: 135 GKEASGALIGPNKFVSNLPYQVAATLILLFFQEFTT---LEQAVVMVQAEVADRIAAKPG 191 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCC------L 219 + YG + + + F+++P F P P+V S V+ P +P L Sbjct: 192 TKAYGAYTAKLALYAQVSGRFEVAPGNFMPPPRVNSAVVRLERAPMTDPSGTSVLTSEQL 251 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 + ++ AF +RRKT+R S+ G E A IE +RAE L ++DF R+ Sbjct: 252 AWVARVIDAAFAQRRKTIRNSMGASGFKKDTLEKAFLAAHIEPTVRAEALGVKDFVRLAM 311 Query: 275 ILTDN 279 L + Sbjct: 312 ALAEG 316 >gi|209526260|ref|ZP_03274790.1| dimethyladenosine transferase [Arthrospira maxima CS-328] gi|209493357|gb|EDZ93682.1| dimethyladenosine transferase [Arthrospira maxima CS-328] Length = 274 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 135/277 (48%), Gaps = 25/277 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L I E++ G ++EIG G G LT+ LL V+ +E D+ Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLGDRILEIGPGTGILTERLLP-KVSSVVAVEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANLPYNIGTRL--- 133 L + N L ++Q D L D + + +P +++AN+PYNI + Sbjct: 65 DLCVQLAKKFGKIDNFL-LLQGDILNFDLNGYLSGFPKFQNPNKVVANIPYNITGPIIEG 123 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L I+ PF +++ LL QKEVG R+ A+ +S +G LSV + + + + Sbjct: 124 LLGTIAKPAVKPF-DAIVLLVQKEVGARLCAKPSSKAFGALSVRVQYLAECDWICHVPAT 182 Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 F+P PKV S V+ P PI P LE+L K+ F RRK LR +LK Sbjct: 183 AFYPPPKVDSAVVRLRPR--PIASPAQNPQLLETLVKL---GFSTRRKMLRNNLKSQVEP 237 Query: 248 NLLHQ----AGIETNLRAENLSIEDFCRITNILTDNQ 280 L+Q I +RAE+LS++ + +++N+L Q Sbjct: 238 QTLNQLLETLDINPQVRAEDLSLQQWVQLSNLLLAPQ 274 >gi|145590046|ref|YP_001156643.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048452|gb|ABP35079.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 258 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 131/263 (49%), Gaps = 17/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQ 80 +K GQNFL D ++ I + +IEIG G G LT+ +L +L ++ I++D Sbjct: 5 RKRFGQNFLQDQGVIYSIVALINPSPDMHIIEIGPGLGALTRPLLSSLDQLDLLEIDRD- 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSP---IRIIANLPYNIGTRLLFN 136 ++ ++ L++I+ DALK +F E N S +++ NLPYNI + LLF+ Sbjct: 64 ----LVAYWEKENLKGLKVIEGDALKFNFLEWAQNCDSKKGLCKVVGNLPYNISSPLLFH 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +SA T + + Q EV ER+ A S + RLSV+ R ++ ++ P F Sbjct: 120 LVSAATQ---IDEQVFMLQAEVVERMVAPAGSSDFSRLSVMLQARYDMELVLEVPPEAFD 176 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ IP + +L+++ AF +RRK LR +L+ L Sbjct: 177 PQPKVNSAVVRMIPRQDFSLTTKQWHALEQVVAAAFSQRRKMLRTNLQVFAER--LKLTD 234 Query: 255 IETNLRAENLSIEDFCRITNILT 277 IE RA+++S++ + +L Sbjct: 235 IELKARAQDISVDRYIEWARVLV 257 >gi|298492284|ref|YP_003722461.1| dimethyladenosine transferase ['Nostoc azollae' 0708] gi|298234202|gb|ADI65338.1| dimethyladenosine transferase ['Nostoc azollae' 0708] Length = 277 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 13/270 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L I +++ + V+EIG G G LT+ LL L ++ +E D Sbjct: 4 PRKQFAQHWLKSEKALNTIVKAAECQETDRVLEIGPGTGILTRRLLPL-VHSLLAVEIDP 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFN 136 +L + N L ++Q D L ++ F +++AN+PYNI ++ Sbjct: 63 DLCKLLVKQLGERENFL-LLQGDFLTLNVPSQLTAFSKFQKQNKVVANIPYNITGPIIEK 121 Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + A P ++S+ LL QKEV ER+ A+ S +G LS+ + ++ + Sbjct: 122 LLGTIASPNPEPYDSIVLLVQKEVAERLYAKPGSRSFGALSLRVQYLADCELICSVPAGA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249 F+P PKV S V+ +P IP + L+ + + FG +RK LR +L+ + + L Sbjct: 182 FYPPPKVDSAVVRLLPRQIEIPVNDPKKLENLVKLGFGSKRKMLRNNLQSVVDRDRLTQL 241 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L Q I +RAE+LS+ + + N+ T + Sbjct: 242 LEQLEINPQVRAEDLSVSQWVTLVNLGTGD 271 >gi|87124270|ref|ZP_01080119.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9917] gi|86167842|gb|EAQ69100.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9917] Length = 280 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 19/257 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L++I +++ G V+E+G G G LT+ LL V +E D+ Sbjct: 9 RKRFGQHWLRDDQVLERILQAADLQAGDRVLEVGPGRGALTERLLASPVASVHAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + P R + + D L V E + +++AN+PYNI LL + Sbjct: 69 LVVGLRQRFAAEP-RFSLQEGDVLAVALEGPGGCRA-TKVVANIPYNITGPLLERLVGRL 126 Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P P ++SL LL QKEV ERI A+ + LSV + + + P F P P Sbjct: 127 DRPVDPPYQSLVLLVQKEVAERIRARPGQSSFSALSVRMQLLAYCSSVCPVPPRCFQPPP 186 Query: 200 KVTSTVIHFIPHLNPIPC-------CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 KV S V+ L+P+P ++++ + AF RRK LR +L L + L Sbjct: 187 KVQSEVV----RLDPLPADQRLPVELARDVERLLRMAFLARRKMLRNTLAPLAAPDQLQA 242 Query: 252 ---QAGIETNLRAENLS 265 AGI+ R + ++ Sbjct: 243 LAGAAGIDLQQRPQEIA 259 >gi|310779117|ref|YP_003967450.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926] gi|309748440|gb|ADO83102.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926] Length = 263 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + +LK+I E SG + ++EIG G G LT++LL + KV +E D+ Sbjct: 6 KKKFGQNFLTNQGEVLKQIMEVSGVEETDVILEIGPGEGALTELLLE-ASSKVNCVEIDR 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL ++P + +I D L VDF+K I ++++AN+PY I + ++ I Sbjct: 65 DLEKILIKKFDENP-KFNLIMQDVLTVDFDK--QIGEKVKVVANIPYYITSPIINKLIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + + ++ QKEV ERI A K+ L++ + A +F I F P PK Sbjct: 122 RKY---VDEIYIMVQKEVAERICA-KSGKERSTLTLAVEYFGDAEYLFTIPKEFFQPVPK 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLL 250 V S + + IP ++ K + +F +RK L ++ LG L Sbjct: 178 VDSAFMSIKLRKDNSRIEEIPE--DTFFKYVKASFSNKRKNLINNISTLGIPKDIVREKL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 QA I+ RAE LSI++F + + Sbjct: 236 EQAEIDGKRRAETLSIDEFMNLIKVF 261 >gi|260221806|emb|CBA30735.1| hypothetical protein Csp_C25050 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 728 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 33/247 (13%) Query: 48 GITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 G ++EIG G LTQ L+ LG VI +++D + K + S HP +L +I+ D L Sbjct: 495 GDPMVEIGPGLAALTQPLVERLGRLTVIELDRD-----LAKRLRS-HP-QLHVIESDVLN 547 Query: 107 VDFEK-------------FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 VDF F ++ +R++ NLPYNI T +LF+ + + E + Sbjct: 548 VDFSSADIAPAAPENAATFATVARKLRVVGNLPYNISTPILFHLLD---YVECIEDQHFM 604 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 QKEV +R+ A +S + RLSV+ WR + + P F P P+V S V+ +P Sbjct: 605 LQKEVIDRMVAPPDSSDFSRLSVMLQWRYAMEDVLFVPPECFDPPPRVNSAVVRMVPLAQ 664 Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG----IETNLRAENLSIEDF 269 P + ++ Q AF +RRK LR +L L Q G + RA+ + +E++ Sbjct: 665 PPVLDVGLFSEMVQVAFSQRRKLLRHTLG-----AWLEQKGFSGQFDVQRRAQEVPVEEY 719 Query: 270 CRITNIL 276 + L Sbjct: 720 VALVQSL 726 >gi|159903252|ref|YP_001550596.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9211] gi|226732610|sp|A9B9Y0|RSMA_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|159888428|gb|ABX08642.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 282 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 124/256 (48%), Gaps = 17/256 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D+ IL+KI E++ + V+EIG G G LT LL V IE D Sbjct: 9 RKRFGQHWLKDVAILEKIVEAAELCENDRVLEIGPGRGALTHKLLNSKVSLVHAIELDTD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ H R + DALK+ I +++AN+PYNI + LL I Sbjct: 69 LVVGLRE-RFFHETRFSLKGGDALKISLLPPDGIEVN-KVVANIPYNITSPLLERLIGKL 126 Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P +E L LL QKEV +RI A + +SV K+ + D+SP F PSP Sbjct: 127 GFFPETRYERLVLLLQKEVADRILAMPGQSSFSAMSVRVQLLCKSRSVCDVSPKCFKPSP 186 Query: 200 KVTSTVI-----HFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENL 249 KV S V+ F LN I +ESL + AF RRK LR +L + E+L Sbjct: 187 KVHSKVVVIEPFAFSERLNVDIEKRVESL---LRTAFLGRRKKLRNTLASIRPLNQLESL 243 Query: 250 LHQAGIETNLRAENLS 265 Q GI N R + +S Sbjct: 244 ADQLGISLNQRPQEIS 259 >gi|323453421|gb|EGB09293.1| hypothetical protein AURANDRAFT_13505 [Aureococcus anophagefferens] Length = 255 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 125/262 (47%), Gaps = 16/262 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ +GQN+L D N KI +S G S G V+E+G G G LT++LL +++ +E Sbjct: 3 PKQSLGQNYLSDQNYATKIVDSLGDDSERGRRVVELGPGLGALTRLLLR-QYPEMVAVEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137 D + +L+ +P ++ D L VD+ K + +I NLPY I +++LF Sbjct: 62 DGRAVELLEQT---YPAPFTVLHSDVLAVDYTKLAAARGGRLSVIGNLPYYITSQILFCL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + Q EV R+ A+ + YG LSV+ + + F I F+P Sbjct: 119 CDHHAS---VSRAVVTMQHEVALRLVAKPRTKDYGILSVVFQLYAQPKIAFKIPHTAFYP 175 Query: 198 SPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQAG 254 PKVTS + I F +P L+ + AF +RRK LRQSLK L G L Q Sbjct: 176 QPKVTSALVAIDFPEGGVDLPVDPRKLRTVVTTAFRQRRKMLRQSLKGILNGATLPDQFA 235 Query: 255 IETNLRAENLSIEDFCRITNIL 276 + R E L+ +F +T + Sbjct: 236 TK---RPEELAPAEFLDLTGAI 254 >gi|292656864|ref|YP_003536761.1| dimethyladenosine transferase [Haloferax volcanii DS2] gi|291372487|gb|ADE04714.1| dimethyladenosine transferase [Haloferax volcanii DS2] Length = 287 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 22/249 (8%) Query: 27 QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q+FL+D ++ +I D V+EIG GPG LT LL + A +V V+E+D+ F Sbjct: 34 QHFLVDDRVVDRIPTYLPEEADRSHVLEIGGGPGVLTDRLLGV-ADRVTVVEQDRTFAAH 92 Query: 86 LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ +RL +++ DAL VD +F ++NLPY I + + F + Sbjct: 93 LRREFADEVESDRLTVVEGDALDVDLPEF------TACVSNLPYGISSEISFRLL----- 141 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L L+FQKE GER+ A+ + YGRLSV T + + + F P P V S Sbjct: 142 -PRGKPLVLMFQKEFGERMAAEAGTSEYGRLSVSTQHYGEVELCEHVPREAFDPKPAVQS 200 Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 V+ P E+ + F +RRKT+R ++ N H +G+ Sbjct: 201 VVVRITPREPEYEVDDEAFFLDFVKALFTQRRKTIRNGIR-----NTAHISGLSDPEAVV 255 Query: 263 NLSIEDFCR 271 + ED R Sbjct: 256 EAADEDVLR 264 >gi|295838307|ref|ZP_06825240.1| dimethyladenosine transferase [Streptomyces sp. SPB74] gi|295826962|gb|EFG65164.1| dimethyladenosine transferase [Streptomyces sp. SPB74] Length = 301 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ + TV+E+G G G+LT LL + Sbjct: 13 IRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPGLGSLTLALLEVA 72 Query: 70 ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L + + R ++ DAL+V + +P ++ANL Sbjct: 73 A-DVTAVEIDGTLAAALPATVAARLPEKAERFRLVHSDALRV---RELPGPAPTALVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + +P +L ++ Q EV +R+ A S YG SV W Sbjct: 129 PYNVAVPVLLHML--EHFPSVERTL-VMVQAEVADRLAAPPGSRVYGVPSVKAAWYAHVK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I VF+P+P V S ++ + P+ + + AF +RRK LR Sbjct: 186 RAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFAQRRKGLRAALAG 245 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 246 WAGSAAAAEEALRAAGVSPLARGESLTVEEFARIAE 281 >gi|78212718|ref|YP_381497.1| dimethyladenosine transferase [Synechococcus sp. CC9605] gi|119365857|sp|Q3AKE0|RSMA_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78197177|gb|ABB34942.1| dimethyladenosine transferase [Synechococcus sp. CC9605] Length = 274 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 119/253 (47%), Gaps = 11/253 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++LLD ++L++I E++ V+E+G G G LT+ LL G + V IE D+ Sbjct: 9 RKRFGQHWLLDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+D P + Q D L+ E + +++AN+PYNI LL + Sbjct: 69 LVQGLRDRFVVQPG-FSLHQGDVLEAPLE-LSDGRIADKVVANIPYNITGPLLERLVGRL 126 Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P P ++ L LL QKEV ERI A+ + LSV + + + P F P P Sbjct: 127 DRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCHSVCPVPPRCFQPPP 186 Query: 200 KVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQ 252 KV S VI P +P ++ + ++AF RRK LR +L + N L Sbjct: 187 KVQSEVICLEPLPASERVMPDLAARVESLLKQAFLARRKMLRNTLAGVAEPNRLKDLAAS 246 Query: 253 AGIETNLRAENLS 265 AG R + L+ Sbjct: 247 AGFSLQQRPQELA 259 >gi|150020142|ref|YP_001305496.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429] gi|149792663|gb|ABR30111.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429] Length = 258 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 17/233 (7%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + K +GQNFL + +I KKI E + + V+EIG G G LT+ L+ GA K+ Sbjct: 7 LKEYNVKLLKGLGQNFLTNTHIAKKIVERADINENDVVLEIGPGAGTLTEFLVLTGA-KI 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I +E D++ PIL+ + + +EII D LK D + +++AN+PY+I + Sbjct: 66 IAVEIDKRLKPILERFNKY--DNIEIIFVDFLKFDVS---VLPKGFKVVANIPYSITGMI 120 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR--LSVLTGWRTKATMMFDIS 191 L + +D + L+ QKEVG+R+ P R LSV+ T +FD+S Sbjct: 121 LKKILFSD-----FSKAVLMVQKEVGDRLLL---PPGADRNFLSVVVQSYTMVRKVFDVS 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F P PKV S V+ F ++ + FG +RKTL+ +LKR Sbjct: 173 KGNFVPRPKVDSVVLEF-EKTEDFKYDIKEFWDFVSKCFGAKRKTLQNNLKRF 224 >gi|15679326|ref|NP_276443.1| dimethyladenosine transferase [Methanothermobacter thermautotrophicus str. Delta H] gi|27151554|sp|O27381|RSMA_METTH RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|2622432|gb|AAB85804.1| dimethyladenosine transferase [Methanothermobacter thermautotrophicus str. Delta H] Length = 273 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 15/232 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L Y + ++ +GQN+L+D ++I E + + V+EIG G G LT + L A Sbjct: 9 REVLRKYGVRLRRSLGQNYLIDEVKRQRILEYADLREDDRVLEIGPGIGTLTLPMAEL-A 67 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V IE D IL D + +++I DAL+VDF +F ++++NLPY I Sbjct: 68 GHVTAIESDPLIAAILMD--RLQVDNVDVIVGDALRVDFPEFN------KVVSNLPYQIS 119 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + + F + D +E L++QKE R+ A+ + Y RLSV+ + + ++ + Sbjct: 120 SPITFRLLEHD-----FELAVLMYQKEFARRMVAEPGTREYSRLSVMVHFLAEVEIVDYL 174 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241 P FFP P+V S V+ P P LE + + + Q K K+LR+S Sbjct: 175 KPGCFFPRPRVESAVVTLKPTGFRAPAFLEDVCRALFQHRKKKTSKSLRESF 226 >gi|308807092|ref|XP_003080857.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri] gi|116059318|emb|CAL55025.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri] Length = 344 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 13/218 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I+ I + +G V+EIG G GNLT LL +KV+ +E D + Sbjct: 43 KSFGQHILKNPAIVTAIIDKAGVKSTDVVLEIGPGTGNLTTKLLD-ACKKVVAVEFDPRM 101 Query: 83 FPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ P ++LEIIQ D LKVD +F++ +AN+PY I + L+F ++ Sbjct: 102 VLELRRRVQGDPVWNSKLEIIQGDFLKVDLP-YFDVC-----VANVPYQISSPLIFKLLA 155 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + S TL+FQ+E R+ A Y RLSV T + + + + F P P Sbjct: 156 HR---PMFRSATLMFQREFAMRLVAPPGDSLYCRLSVNTQLLARTQHILKVGKNNFRPPP 212 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 KV S+V+ P IP + + + FG++ KTL Sbjct: 213 KVDSSVVRLEPRHPQIPVNFKEWDGLVRFCFGRKNKTL 250 >gi|76802475|ref|YP_327483.1| dimethyladenosine transferase [Natronomonas pharaonis DSM 2160] gi|119365037|sp|Q3IPM0|RSMA_NATPD RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|76558340|emb|CAI49930.1| probable dimethyladenosine transferase [Natronomonas pharaonis DSM 2160] Length = 274 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 22/234 (9%) Query: 27 QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q+FL+D +L ++ S D V+EIG G G LT LL + A +V VIE+D Sbjct: 21 QHFLIDDRVLDRLPGYLPDSADTDHVLEIGGGTGALTDRLLDV-ADRVTVIERDPGLATF 79 Query: 86 LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L D L +I+ DAL+V F ++NLPY + + + F + Sbjct: 80 LTDEFADEIEAGSLTVIEGDALEVPLPDF------TASVSNLPYGVSSEIAFRLL----- 128 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P L L+FQ+E ER+ A+ + YGRLSV G ++ + F P P V S Sbjct: 129 -PEKRPLVLMFQQEFAERMAAEPGTDEYGRLSVTAGHYADVEVVEPVPKEAFSPPPAVES 187 Query: 204 TVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 V+ P P + L ++ + F +RRKT+R +++ N H +GIE Sbjct: 188 AVVRTTPREPPYEVPDDELFMRLVRAVFTQRRKTMRNAVR-----NTTHISGIE 236 >gi|203284494|ref|YP_002222234.1| dimethyladenosine transferase [Borrelia duttonii Ly] gi|201083937|gb|ACH93528.1| dimethyladenosine transferase [Borrelia duttonii Ly] Length = 274 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 14/281 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K +L + I P+K GQN+L++ NI +KI ++ + EIG G G Sbjct: 1 MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIREKIIDALDIKKNEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T LL A + E D ++ IL + Q N ++I+ D LK ++ +I+ Sbjct: 61 AMTATLLN-KANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKTSIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I++NLPYNI ++++ I + + QKE+ +R+ A++ + +Y ++L Sbjct: 116 KIVSNLPYNIASKVISTLIEDEILT----HMVFTVQKELADRMIAKEGNKNYSSFTILVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI F+P PKV ST I P I + K+ + F RRK L+ Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLTPCKGNIK-NFQIFNKLIRTVFTSRRKKLKN 230 Query: 240 S-LKRLGGENLLHQAGIETNL--RAENLSIEDFCRITNILT 277 + + + EN+L + ++ L R E +S+++F I N LT Sbjct: 231 TIINFIKNENILKEDFLKNFLDKRPEEISVKEFITIANKLT 271 >gi|15220982|ref|NP_171690.1| PFC1 (PALEFACE 1); mRNA (2'-O-methyladenosine-N6-)-methyltransferase [Arabidopsis thaliana] gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] Length = 343 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 30/292 (10%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 HS L+ P+K +GQ+++L+ +I ++A ++ +G V+EIG G G+LT +L+ Sbjct: 58 HSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLIN 117 Query: 68 LGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF-------NISS 117 LGA V+ IEKD P + D+ S+ ++ +++Q+D +K +S Sbjct: 118 LGA-TVLAIEKD----PHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172 Query: 118 P----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172 P ++++NLP+NI T ++ + + + LL Q E R+ + Y Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLLPMGD---IFSKVVLLLQDEAALRLVEPALRTSEYR 229 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229 +++L + ++ F + FFP PKV + V+ F P P ++ + A Sbjct: 230 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLVNSA 289 Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 F +RK LR+SL+ + E L AG+ R E L+++DF ++ N++ Sbjct: 290 FNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVIA 341 >gi|14591574|ref|NP_143656.1| dimethyladenosine transferase [Pyrococcus horikoshii OT3] gi|3258259|dbj|BAA30942.1| 290aa long hypothetical dimethyladenosine transferase [Pyrococcus horikoshii OT3] Length = 290 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 23/246 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I P+ +GQ+FL+ ++++K E++ + ++E+G G G LT L A+K Sbjct: 30 LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAK-RAKK 88 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE DQ+ ILK S N ++IIQ DA++V++ KF ++++N+PY I + Sbjct: 89 VYTIEIDQKIIEILKKEYSW--NNVKIIQGDAVRVEWPKFN------KVVSNIPYKISSP 140 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + D +E +++Q E R+ A+ S +Y RLS++ ++ I Sbjct: 141 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 195 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S ++ P + I + + + F RRKT+ ++LK + +H Sbjct: 196 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 246 Query: 253 AGIETN 258 G+ + Sbjct: 247 LGVSKD 252 >gi|282865480|ref|ZP_06274531.1| dimethyladenosine transferase [Streptomyces sp. ACTE] gi|282559524|gb|EFB65075.1| dimethyladenosine transferase [Streptomyces sp. ACTE] Length = 326 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+EIG G G+LT LL Sbjct: 15 IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPEDVVVEIGPGLGSLTLALLE-A 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V+ +E D L ++++ P +R ++ DA+ V +P ++ANL Sbjct: 74 ADRVVAVEIDDVLAGALPATVAARLPVRADRFALVHSDAMLV---TELPGPAPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +P +L ++ Q EV +R+ A+ + YG SV W Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQAEVADRLAAKPGNKVYGVPSVKAAWYADVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I VF+P+P V S ++ + PI + + AF +RRKTLR Sbjct: 188 RAGSIGRTVFWPAPNVDSGLVSLVRRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAALAG 247 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E L++E+F I Sbjct: 248 WAGSAAAAETALVAAGVSPQARGEALTVEEFAAIAE 283 >gi|268323689|emb|CBH37277.1| Probable dimethyladenosine transferase [uncultured archaeon] Length = 250 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 23/268 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTL 68 K IL I + +GQ FL+D ++ ++ E S GS D V+EIGAG G++T+ L Sbjct: 4 KRILMDRGIRAVRSLGQYFLVDNDVAARMVEYASVGSED--LVLEIGAGLGSVTEEL-AR 60 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A++V +EKD++ IL++ ++E+I+ D +K++ +F +++A++PY+ Sbjct: 61 KAKRVYAVEKDKELCEILREQYVDKKGKIEVIEADIMKLELPEF------DKVVASIPYS 114 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + + + + + + +E LL+QKE +++TA+ S YGRLSV+ ++ Sbjct: 115 LSSPITYKLLLHN-----FELAVLLYQKEFAQKMTAEPRSHLYGRLSVIAQALADIEILE 169 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + F PSP V + ++ F + + AFG RRK +R + Sbjct: 170 IVHRDAFCPSPPVKTAIVRFTEKKKRLVEDKREFIEFVSFAFGHRRKMMRHIFRTSDALK 229 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 L + R E LS E+F R+ +I Sbjct: 230 DLAK-------RPEELSPEEFARLFSIF 250 >gi|229816446|ref|ZP_04446747.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM 13280] gi|229807988|gb|EEP43789.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM 13280] Length = 321 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 27/287 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQML 65 + + +L + + K +GQNFL+D +++++I AE +GS V+E+G G G LT L Sbjct: 38 ATREMLEAFGLATKHRLGQNFLIDNHVIERIMALAELTGSE---RVLEVGPGIGTLTLAL 94 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIA 123 + AR V IE D + P+L + H N I DAL V P ++A Sbjct: 95 VQEAAR-VTSIEMDTELEPVLSAHAMDHSN-FRFIMGDALAVPPVAIAEALDGEPELLVA 152 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ ++ + T P ++ ++ QKEV +RI A + YG +V + Sbjct: 153 NLPYNVAATIILQFF--QTMPSLRRAVVMV-QKEVADRIAAAPGTKAYGAYTVKLSLYGE 209 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--------LKKITQEAFGKRRK 235 T F++ P F P+P V S V+ I ++ E + ++ AF +RRK Sbjct: 210 VTGRFEVPPRCFMPAPHVDSAVVR-IDRVDVSDAEGEGAAPADAAAVARVVDAAFAQRRK 268 Query: 236 TLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILT 277 T+R S+ G + GI RAE L+ EDF + LT Sbjct: 269 TIRNSMSSNGFDKDALDAAFEACGISPTARAEALTTEDFIALAASLT 315 >gi|257784886|ref|YP_003180103.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469] gi|257473393|gb|ACV51512.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469] Length = 314 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 35/292 (11%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + K L + + K +GQNFL+ +I++KI + + V+E+G G G LT LL Sbjct: 16 RATKETLERFGLATKYRLGQNFLVQDHIIEKIVQLAEVRPTDVVVEVGPGLGTLTVALLD 75 Query: 68 LGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISS-------- 117 A V +E D + +L D++ + HP+ ++ DAL + +K Sbjct: 76 -NALAVCSLEADPELEQVL-DVTCKEPHPDSFVLVMGDALAITSQKLAEAYGVLPAVAQS 133 Query: 118 -------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 P + ++NLPY + L+ + P E ++ Q EV +RI A+ ++ Sbjct: 134 AIPVTPMPTKFVSNLPYQVAATLILKFFQ---ELPSLERAVVMVQAEVADRIAAKPSTKA 190 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLK----- 223 YG + + T F++ P F P P+V S V+ NP+ S + Sbjct: 191 YGAYTAKLSLFAQVTGRFEVGPGNFMPPPRVNSAVVRLDRTEARNPLTSEFLSEEELLHA 250 Query: 224 -KITQEAFGKRRKTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDF 269 ++ AF +RRKT+R S+ G ++ L QA GI RAE L+ +DF Sbjct: 251 MRVIDAAFAQRRKTIRNSMSASGFDKDKLDQAFLATGIAPTARAEVLTSQDF 302 >gi|167754973|ref|ZP_02427100.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402] gi|237735300|ref|ZP_04565781.1| dimethyladenosine transferase [Mollicutes bacterium D7] gi|167705023|gb|EDS19602.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402] gi|229381045|gb|EEO31136.1| dimethyladenosine transferase [Coprobacillus sp. D7] Length = 268 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 20/272 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL Y + K GQNFL+D+NI+ KI S+ VIE+G G G LTQ+L Sbjct: 11 KYILEKYHLNALKKYGQNFLIDVNIINKIVTSAKIDQTTAVIEVGPGIGALTQVLGRYSG 70 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 KV E D++F P+ ++ +Q + +EII D ++ D ++ + ++ANLP Sbjct: 71 -KVTSFEIDERFMPVYQEFLNQ--DNIEIIFGDFMEQDIKPIVDQLKQRYQKVCLVANLP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I T ++ + + + + ++ QKEV ++T +P L ++ Sbjct: 128 YYITTAIIEKVVLGNFG---IDEMIVMVQKEVALKMTGIYKNP----LLLMIKDMGTIEY 180 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-- 244 +F ++ +VF P+P V S ++ L P L ++ F +RRKT+ +LK+ Sbjct: 181 LFTVNKNVFMPAPHVDSAILKI--ELKKAPDL--KLYEVLNICFKQRRKTILNNLKQSYE 236 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E +L Q GIE R+E L + DF IT ++ Sbjct: 237 EAEEILLQTGIENRKRSEELELADFKNITKMI 268 >gi|284165664|ref|YP_003403943.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511] gi|284015319|gb|ADB61270.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511] Length = 284 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 23/237 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF 83 Q+FL+D +L ++ +D T V+EIG G G LT LL +G KV V+E+D++ Sbjct: 21 QHFLVDDRVLDRLPTYLQEIDADTDHVLEIGGGTGALTDRLLAMGDEGKVTVVERDRELA 80 Query: 84 PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ + L +I+ DAL+VD +F ++NLPY + + + F + Sbjct: 81 EFLREEFADEIAAGNLTVIEGDALEVDLPEF------TASLSNLPYGVSSEITFRLL--- 131 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P L L+FQ+E ER+ A+ + YGRLSV T ++ I F P P V Sbjct: 132 ---PEGRPLVLMFQREFAERMVAEPGTSEYGRLSVSTQHYAAPEIVETIPKEAFSPPPAV 188 Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 S V+ P E + + F +RRKT+R +++ N H G+E Sbjct: 189 ESAVVRLEPRDPDYEVGDEEFFLRFVKALFTQRRKTIRNAIR-----NTAHITGLEA 240 >gi|27151557|sp|O59487|RSMA_PYRHO RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase Length = 268 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 23/246 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I P+ +GQ+FL+ ++++K E++ + ++E+G G G LT L A+K Sbjct: 8 LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAK-RAKK 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE DQ+ ILK S N ++IIQ DA++V++ KF ++++N+PY I + Sbjct: 67 VYTIEIDQKIIEILKKEYSW--NNVKIIQGDAVRVEWPKFN------KVVSNIPYKISSP 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + D +E +++Q E R+ A+ S +Y RLS++ ++ I Sbjct: 119 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S ++ P + I + + + F RRKT+ ++LK + +H Sbjct: 174 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 224 Query: 253 AGIETN 258 G+ + Sbjct: 225 LGVSKD 230 >gi|221060378|ref|XP_002260834.1| dimethyladenosine transferase [Plasmodium knowlesi strain H] gi|193810908|emb|CAQ42806.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain H] Length = 384 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ KK+ GQ+ L + IL KI ++ V+EIG G GNLT LL + A+KVI I+ Sbjct: 60 ILYKKH-GQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDI 117 Query: 79 DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + K + N LE+ + DA+K F +F +I + AN+PY I + L+F Sbjct: 118 DARMVSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF-DICT-----ANIPYKISSPLVFKL 171 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I+ P ++ L+FQKE ER+ A +Y RL+V K + ++ F P Sbjct: 172 IA---HRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCKVIKICNVDRSSFNP 228 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S ++ IP N + + + F ++RKTL KR N+L Sbjct: 229 PPKVDSVILKLIPKENNFFVNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 283 >gi|212223555|ref|YP_002306791.1| dimethyladenosine transferase [Thermococcus onnurineus NA1] gi|226732633|sp|B6YTK7|RSMA_THEON RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|212008512|gb|ACJ15894.1| dimethyladenosine transferase [Thermococcus onnurineus NA1] Length = 272 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 16/234 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L +++S Y + +GQNFL+ +I+++ E + V+EIG G G LT L + Sbjct: 5 LFSLISKYGLRANSDLGQNFLIVDDIIERNVERAELSGRDVVLEIGPGLGVLTDAL-SKR 63 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KV IEKD + IL+ + + +EII+ DALKVDF +F +I++NLPY I Sbjct: 64 AGKVYAIEKDPRLVEILR--KEYNWSNVEIIEGDALKVDFPEFN------KIVSNLPYQI 115 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F ++ +E L++Q E +R+ A+ +Y RLS++ ++ ++ Sbjct: 116 SSPITFRFLGYG-----FERAVLIYQLEFAQRMVARPGDRNYSRLSLMVQAKSYVELVER 170 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 I F+P PKV S VI P P +E + + + F RR T+ +LK+ Sbjct: 171 IGRGAFYPRPKVDSAVIVLEP--KPKSEVIELNEDLVRALFQHRRSTVAAALKK 222 >gi|318060949|ref|ZP_07979670.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Streptomyces sp. SA3_actG] gi|318078811|ref|ZP_07986143.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Streptomyces sp. SA3_actF] gi|333026402|ref|ZP_08454466.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071] gi|332746254|gb|EGJ76695.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071] Length = 292 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ + TV+E+G G G+LT LL + Sbjct: 13 IRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPGLGSLTLALLEVA 72 Query: 70 ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L + + ++ DAL+V + +P ++ANL Sbjct: 73 A-DVTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---RELPGPAPTALVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + +P +L ++ Q EV +R+ A S YG SV W Sbjct: 129 PYNVAVPVLLHML--EHFPSVERTL-VMVQAEVADRLAAPPGSRVYGVPSVKAAWYAHVK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238 I VF+P+P V S ++ + P+ + + AF +RRK LR Sbjct: 186 RAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFAQRRKGLRAALAG 245 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 246 WAGSAAAAEEALRAAGVSPQARGESLTVEEFARIAE 281 >gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] Length = 342 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 30/292 (10%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 HS L+ P+K +GQ+++L+ +I ++A ++ +G V+EIG G G+LT +L+ Sbjct: 57 HSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLIN 116 Query: 68 LGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF-------NISS 117 LGA V+ IEKD P + D+ S+ ++ +++Q+D +K +S Sbjct: 117 LGA-TVLAIEKD----PHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILESRRLSH 171 Query: 118 P----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172 P ++++NLP+NI T ++ + + + LL Q E R+ + Y Sbjct: 172 PDSSLAKVVSNLPFNISTDVVKLLLPMGD---IFSKVVLLLQDEAALRLVEPALRTSEYR 228 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229 +++L + ++ F + FFP PKV + V+ F P P ++ + A Sbjct: 229 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPSDYPDVSSTKNFFSLVNSA 288 Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 F +RK LR+SL+ + E L AG+ R E L+++DF ++ N++ Sbjct: 289 FNGKRKMLRKSLQHISSSPEIEKALGVAGLPVTSRPEELTLDDFVKLHNVIA 340 >gi|294660187|ref|NP_852792.2| dimethyladenosine transferase [Mycoplasma gallisepticum str. R(low)] gi|298286858|sp|Q7NC69|RSMA_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|284811837|gb|AAP56360.2| dimethyladenosine transferase [Mycoplasma gallisepticum str. R(low)] gi|284930252|gb|ADC30191.1| dimethyladenosine transferase [Mycoplasma gallisepticum str. R(high)] Length = 268 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 127/255 (49%), Gaps = 27/255 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K GQNFL+D NI+ + E+ ++ V+EIG G G +++ L+ A IE D+ Sbjct: 16 PSKQRGQNFLIDQNIINNVVEAVSKINPSKVLEIGPGLGAISEQLIKRFADNYYAIELDK 75 Query: 81 QFF-----PILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134 + F +LKD I+ DAL++D++ F N+ ++ NLPYNI ++L+ Sbjct: 76 KLFHHLNERLLKD---------HILHADALEIDWKSIFDNLGDNPTMVGNLPYNISSKLI 126 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 +I + + ++ QKE+G R+ A+ NS Y S L + + + +I+ Sbjct: 127 KKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYSLSVSKIIEINETA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253 F P PKV ST++ F+ + E +K + F RRKT+ +LK L+ Q+ Sbjct: 182 FIPQPKVRSTLL-FLEKKD--IAFNEGYEKFLKLIFLSRRKTILNNLKNNYDPKLIIQSL 238 Query: 254 ---GIETNLRAENLS 265 G + RA+ LS Sbjct: 239 VSLGFKKTSRAQELS 253 >gi|82753583|ref|XP_727737.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL] gi|23483724|gb|EAA19302.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii] Length = 394 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ KK+ GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ Sbjct: 45 ILYKKH-GQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTIKLLPL-AKKVITIDI 102 Query: 79 DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + K + N LE+ + DA+K F KF ++ + AN+PY I + L+F Sbjct: 103 DARMISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF-DVCT-----ANIPYKISSPLIFKL 156 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I+ P ++ L+FQKE ER+ A +Y RL+V + + ++ F P Sbjct: 157 IA---HRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNP 213 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S V+ IP N + + + F ++RKTL KR N+L Sbjct: 214 PPKVDSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 268 >gi|307596557|ref|YP_003902874.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429] gi|307551758|gb|ADN51823.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429] Length = 276 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 135/270 (50%), Gaps = 19/270 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L +++ ++ P K + Q+F++D I++ I G V+E+G G G LT L + Sbjct: 13 LMSLIMRNRLKPIKRLSQHFVVDPTIIRDIVNHIPR--GSKVLEVGTGIGILTYYLARV- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +VI IE D + I + + S N + IIQ DAL+V + + + ++N+PY+I Sbjct: 70 ASQVITIEIDGRLVRIAEHVLSGL-NNVSIIQGDALRVPWPQVDAL------VSNVPYSI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + L+ I L Q+EV R+T + S YGRLSV+T +++ Sbjct: 123 TSPLIMRIIKEGV-----PRALLTIQREVANRLTGEPGSDDYGRLSVITQCNYSVSILNT 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 +P F+PSP+V S++I + P +++L+ +T+ F R + LR L + G Sbjct: 178 YAPDSFYPSPEVYSSLI-MMSKKEPCYDDMDALESVTKLLFRHRNRVLRWVLNKYLGPSA 236 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNIL 276 N + AGI+ + R L I + +IT L Sbjct: 237 VNAVVNAGIDVSARVRQLGINELIKITGSL 266 >gi|87307877|ref|ZP_01090020.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645] gi|87289491|gb|EAQ81382.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645] Length = 303 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 134/284 (47%), Gaps = 39/284 (13%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P GQNFL+D+N+L I S+ V+EIG G G+LT + A VI +E D+ Sbjct: 23 PVSKHGQNFLIDMNLLDMIVSSADLGPQDVVLEIGTGTGSLTTRMAA-AAGHVITVEIDE 81 Query: 81 QFFP------------------ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 F +LK+ ++ P +E I++ ++ S ++++ Sbjct: 82 HLFTLASEELFEFDNVTMLQFDVLKNKNAFRPEVMETIKEKLAEIP-------DSRLKLV 134 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ T +L N + ++ P S+T+ QKEV ERI A ++ YG LS+ + Sbjct: 135 ANLPYNVATPILSNLLRSEITP---FSMTVTIQKEVAERIIAVPSTKDYGALSIWMQSQC 191 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLR-- 238 + ++ + P VF+P PK+ S +IH L E T+ F RRK LR Sbjct: 192 RCEIVRIMGPGVFWPRPKIDSAIIHLQVDDELRGRIPDREFFHHFTRAIFFHRRKFLRSV 251 Query: 239 ------QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L + + ++ + G++ + RAE + ++ ++ + Sbjct: 252 LMSAFKEQLTKTQVDEVIAENGLQPDARAEQFTPDEVLAMSEMF 295 >gi|15790240|ref|NP_280064.1| dimethyladenosine transferase [Halobacterium sp. NRC-1] gi|169235969|ref|YP_001689169.1| dimethyladenosine transferase [Halobacterium salinarum R1] gi|27151602|sp|Q9HQH1|RSMA_HALSA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|226732584|sp|B0R506|RSMA_HALS3 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|10580702|gb|AAG19544.1| dimethyladenosine transferase [Halobacterium sp. NRC-1] gi|167727035|emb|CAP13821.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Halobacterium salinarum R1] Length = 282 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 21/238 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P Q+FL+D +L +I + D V+EIGAG G LT LL++ A +V +E+D+ Sbjct: 17 PNPDFDQHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSV-ADRVTAVERDE 75 Query: 81 QFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + L++ + L+++ DAL VD F ++NLPY + + + F + Sbjct: 76 SYASFLREEFADAIAAGDLDVVAGDALAVDLPAF------TCAVSNLPYGVASEVTFRLL 129 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + L++Q E ER+ A + YGRLSV T +++ + F P Sbjct: 130 ------PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVSIVETVPAAAFDPQ 183 Query: 199 PKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S V+ P E+ + F +RRKT R +++ N H +G+ Sbjct: 184 PRVESAVVRVTPRDPDYVVADEAFFLSFVKALFTQRRKTTRNAIR-----NTAHISGL 236 >gi|242060710|ref|XP_002451644.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor] gi|241931475|gb|EES04620.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor] Length = 359 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 20/268 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + ++ I +G TV+EIG G GNLT+ LL G + V+ +E D + Sbjct: 31 EKSKGQHILKNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPR 90 Query: 82 FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L HP +RL++IQ D LK D +F+I +AN+PY I + L F +S Sbjct: 91 MVLELNRRFQGHPLSSRLKVIQGDVLKCDLP-YFDIC-----VANIPYQISSPLTFKLLS 144 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + ++FQ+E R+ AQ Y RLSV ++ + + + + F P P Sbjct: 145 HR---PIFRCAVIMFQREFAMRLVAQPGDTLYCRLSVNVQLLSRVSHLLKVGKNNFRPPP 201 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-------- 251 KV S+V+ P P + + + F ++ +TL K LL Sbjct: 202 KVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNRTLGSLFKTKRVLELLEKNYKTMQS 261 Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278 Q + ++ + +S +D + N++ D Sbjct: 262 LQLTRDADMGEQKMSADDVALLANMVED 289 >gi|239930763|ref|ZP_04687716.1| dimethyladenosine transferase [Streptomyces ghanaensis ATCC 14672] gi|291439129|ref|ZP_06578519.1| dimethyladenosine transferase dimethyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291342024|gb|EFE68980.1| dimethyladenosine transferase dimethyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 293 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 132/277 (47%), Gaps = 20/277 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 16 VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 74 Query: 70 ARKVIVIEKDQQFFPILKDISSQH-PNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L + P R E ++ DA+ V +P ++ANL Sbjct: 75 ADRVTAVEIDDVLAAALPATVAARVPGRAERFALVHSDAMHV---TELPGPAPTALVANL 131 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + +T+P +L ++ Q EV +R+ A S YG SV W + Sbjct: 132 PYNVAVPVLLHML--ETFPSIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 188 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLR---- 238 I +VF+P+P V S ++ + P P S ++ + AF +RRKTLR Sbjct: 189 RAGAIGRNVFWPAPNVDSGLVSLVRRAEP-PKTTASRREVFAVVDAAFAQRRKTLRAALA 247 Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 248 GWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 284 >gi|163783210|ref|ZP_02178204.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] gi|159881544|gb|EDP75054.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] Length = 247 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 18/259 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+ L+ +L++IA S+ ++G V+EIG G GNLT++LL +++ V+E D Sbjct: 5 KKSYGQHLLVSKGVLERIA-SALEIEGKDIVVEIGGGTGNLTRVLLEHPLKRLYVLELDP 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +++ +S +RLE+I+ DA K DF ++ ++++ NLPYN+G+ ++ N + Sbjct: 64 D---MVEKLSHIEDSRLEVIRADASKFDF---CSLGEDLKVVGNLPYNVGSLIVENVVFH 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 L+ QKEV +++ K S + + + T + T+ M + P F P PK Sbjct: 118 HRCVSVA---VLMLQKEVALKLSG-KGSASWLSVFLNTFYETEYVM--SVPPRFFVPPPK 171 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S VI + P ++ K + F RRK LR+ L E+ L +AGI R Sbjct: 172 VDSGVIRCVRKEAPPELDMKRYKGFLTKLFADRRKMLRKKLP----EDTLSKAGISPKAR 227 Query: 261 AENLSIEDFCRITNILTDN 279 E LS+EDF R+ N+ + Sbjct: 228 VEELSVEDFLRLYNVYEEE 246 >gi|323449377|gb|EGB05265.1| hypothetical protein AURANDRAFT_60268 [Aureococcus anophagefferens] Length = 312 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 18/232 (7%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 S + + K +GQNFL + I+ I E + +V+EIG G GNLT LL A+K+ Sbjct: 19 SSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLA-QAKKLT 77 Query: 75 VIEKDQQFFPILKDISSQHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +E D++ ++++++ + N RLE++ D LKV +F++ +ANLPYNI Sbjct: 78 CVEFDRR---MVREVAKRVENDPRKHRLEMVHGDVLKVALP-YFDVC-----VANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LF ++ P + S ++FQ+E +R++A+ Y RLSV T K T + Sbjct: 129 SSPFLFKLLAHR---PHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIK 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P PKV S V+ P P + + F ++ KTLR + Sbjct: 186 VGRNNFRPPPKVDSRVVKIEVRNPPPPVNFVEWDGLVKLCFNRKNKTLRSTF 237 >gi|317124052|ref|YP_004098164.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043] gi|315588140|gb|ADU47437.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043] Length = 323 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 17/275 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K GQNF++D N ++KI +G V+E+G G G+LT LL + Sbjct: 32 IRELAERLDVRPTKQWGQNFVVDANTVRKIVRVAGVGPEDVVVEVGPGLGSLTLALLPV- 90 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 R+V IE D + L + + ++ +L ++ DAL V P ++ANL Sbjct: 91 VRQVTAIEVDPRLAGALEGTVRSLQPENAAKLRLVAADALTV---TRLPGPKPTALVANL 147 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNI ++ +++ + ++ Q EV ER+ A+ YG S+ W Sbjct: 148 PYNISVPVVLSFLEQFA---SIRRVLVMVQLEVAERLAAKPGGKIYGVPSLKAAWYADVE 204 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + + +VF+P+P V S ++ + P + + + AF +RRK+LR +L Sbjct: 205 LAGRVGRNVFWPAPNVDSGLVSLVRRDPPDTTATRQEVFRCIDAAFLQRRKSLRGALASW 264 Query: 245 GGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 G L AG++ R E L I F RI Sbjct: 265 AGSPARAEAALLAAGVDPKARGEQLDIVAFARIAE 299 >gi|83319298|ref|YP_424004.1| dimethyladenosine transferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110032|sp|P43038|RSMA_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83283184|gb|ABC01116.1| dimethyladenosine transferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 266 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 129/269 (47%), Gaps = 23/269 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KKY GQNF+ DLN++ KI + +IEIG G G LT+ L+ KV+VIE DQ Sbjct: 3 AKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVK-RFDKVVVIEIDQ 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138 ILK H N LEIIQ D L++D ++ + I II+N PY I + +LF + Sbjct: 62 DMVEILK-TKFNHSN-LEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV RI + KN +Y LS+ + ++ F ++ +F+P Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPI 176 Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247 PKV S +I + +N +E ++ + F +RKT + Sbjct: 177 PKVDSAIISLTFNNIYKKQINDDKKFIEFVRTL----FNNKRKTILNNLNNIIQNKNKAL 232 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L I +NLR E L I+++ ++ N++ Sbjct: 233 EYLKMLNISSNLRPEQLDIDEYIKLFNLI 261 >gi|256028569|ref|ZP_05442403.1| dimethyladenosine transferase [Fusobacterium sp. D11] gi|289766489|ref|ZP_06525867.1| dimethyladenosine transferase [Fusobacterium sp. D11] gi|289718044|gb|EFD82056.1| dimethyladenosine transferase [Fusobacterium sp. D11] Length = 264 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 17/264 (6%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV IE D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCIEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N ++ D L+VD +K+ N + +++AN+PY I + ++ I + Sbjct: 65 DLENTLRKKFSSKEN-YTLVMGDVLEVDLKKYINQGT--KVVANIPYYITSPIINKIIES 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + +A +F I F P P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPIPN 177 Query: 201 VTSTV--IHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252 V S I F E L K + AF +RK + +L LG + +L+Q Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEILNQ 237 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 + N RAEN+SI+ F + NI Sbjct: 238 IEVSENERAENISIDKFIELINIF 261 >gi|319441627|ref|ZP_07990783.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Corynebacterium variabile DSM 44702] Length = 318 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 28/289 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--T 67 ++ + + I P K MGQNF++D N +++I ++ VIE+G G G+LT LL Sbjct: 17 IRALAAELDITPTKKMGQNFVIDPNTVRRIVSAAELSTDDHVIEVGPGLGSLTLALLEQV 76 Query: 68 LGARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKF--FNISSPIRI 121 G V +E D++ L + I P R + +I DAL + + +P + Sbjct: 77 GGTGGVTAVELDKRLAARLPRTIVEFAPARADDVTVIDHDALTLTAADLAEAGVPAPTAL 136 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + + +P L ++ Q EV +R+ A S YG SV G+ Sbjct: 137 VANLPYNVSVPVLLHLLQ--EFPSIRRVL-VMVQLEVADRLAASPGSKIYGVPSVKAGFY 193 Query: 182 TKATMMFDISPHVFFPSPKVTSTVI---HFIPHLNPIPCCL-----ESLKK----ITQEA 229 + I +VF+P+PK+ S ++ + P L E+L+K +T A Sbjct: 194 GAVSKAGTIGKNVFWPAPKIDSGLVRIDRWTDSDRPWQDALTSHDPETLRKEVFAVTDAA 253 Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 F +RRKTLR +L G E +L AGI+ R E L F + Sbjct: 254 FLQRRKTLRAALSGHFGSGADAEAVLTAAGIDPKERGEKLDTGSFVDLA 302 >gi|303279442|ref|XP_003059014.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla CCMP1545] gi|226460174|gb|EEH57469.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla CCMP1545] Length = 380 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 105/217 (48%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I+ I E G V+EIG G GNLT LL A+KVI IE D + Sbjct: 32 KSYGQHILKNPMIVNAIVEKGGVKSTDVVLEIGPGTGNLTMRLLET-AKKVIAIEFDPRM 90 Query: 83 FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S H + L+II D LKVD +F++ IAN PY I + L+F +S Sbjct: 91 VVELERRVSGTPHGHNLKIISGDFLKVDLP-YFDVC-----IANCPYQISSPLVFKLLS- 143 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + S TL+FQ+E R+ P Y RLSV + T + + + F P PK Sbjct: 144 --HRPMFRSATLMFQREFAMRLCVNPGDPLYCRLSVNAQLLARTTHILKVGKNNFRPPPK 201 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+V+ P I + + FG++ KTL Sbjct: 202 VDSSVVRIEPRSPMIDVNFREWDGLVRLCFGRKNKTL 238 >gi|170077519|ref|YP_001734157.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase [Synechococcus sp. PCC 7002] gi|226732632|sp|B1XIV9|RSMA_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169885188|gb|ACA98901.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase [Synechococcus sp. PCC 7002] Length = 273 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 25/275 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQ++L D IL +I ++ V+EIG G G LT LL ++ +E D+ Sbjct: 3 PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLP-QVEALLSVEIDR 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFN 136 + PN L +++ D L+ D +F +P +++AN+PYNI +L Sbjct: 62 DLCKYMVKNYGDRPNFL-LLEADYLQTDINEFLGDFPQFQNPRKVVANIPYNITGPILEK 120 Query: 137 WISADTWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + P PF ES+ LL QKEVG+R+ A + +G L++ + + + P Sbjct: 121 LLGTIDRPNSNPF-ESIVLLIQKEVGDRLVAHPCTKAFGALTLRVQYLADCETVCVVPPK 179 Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 F+P PKV S V+ P P+ P L +L K+ F +RK LR +LK L Sbjct: 180 AFYPKPKVESVVVRLRPR--PLAQPAQNPKLLATLIKV---GFASKRKMLRNNLKSLYNP 234 Query: 248 NLLH----QAGIETNLRAENLSIEDFCRITNILTD 278 +L I R E + + + +++ L D Sbjct: 235 EILDPIFADLDISPQARGEEVDLLQWIALSDRLND 269 >gi|115481328|ref|NP_001064257.1| Os10g0183900 [Oryza sativa Japonica Group] gi|110288720|gb|ABG65951.1| dimethyladenosine transferase, putative, expressed [Oryza sativa Japonica Group] gi|113638866|dbj|BAF26171.1| Os10g0183900 [Oryza sativa Japonica Group] gi|215704636|dbj|BAG94264.1| unnamed protein product [Oryza sativa Japonica Group] gi|218184228|gb|EEC66655.1| hypothetical protein OsI_32926 [Oryza sativa Indica Group] Length = 364 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 11/218 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + ++ I E +G TV+EIG G GNLT+ LL G + V+ +E D + Sbjct: 35 EKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPR 94 Query: 82 FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L P +RL++IQ D LK D +F+I +AN+PY I + L F +S Sbjct: 95 MVLELNRRFQGDPLASRLKVIQGDVLKCDLP-YFDIC-----VANIPYQISSPLTFKLLS 148 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + ++FQ+E R+ AQ Y RLSV ++ + + + + F P P Sbjct: 149 HR---PIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNFRPPP 205 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 KV S+V+ P P + + + F ++ KTL Sbjct: 206 KVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNKTL 243 >gi|156102204|ref|XP_001616795.1| dimethyladenosine transferase [Plasmodium vivax SaI-1] gi|148805669|gb|EDL47068.1| dimethyladenosine transferase, putative [Plasmodium vivax] Length = 417 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ KK+ GQ+ L + IL KI ++ V+EIG G GNLT LL + A+KVI I+ Sbjct: 79 ILYKKH-GQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDI 136 Query: 79 DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + K + N LE+ + DA+K F +F +I + AN+PY I + L+F Sbjct: 137 DARMVSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF-DICT-----ANIPYKISSPLIFKL 190 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I+ P ++ L+FQKE +R+ A +Y RL+V K + ++ F P Sbjct: 191 IA---HRPLFKCAVLMFQKEFADRMLANVGDSNYSRLTVNVKLFCKVVKICNVDRSSFNP 247 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S ++ IP N + + + F ++RKTL KR N+L Sbjct: 248 PPKVDSVILKLIPKENNFFINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 302 >gi|118619728|ref|YP_908060.1| dimethyladenosine transferase [Mycobacterium ulcerans Agy99] gi|118571838|gb|ABL06589.1| dimethyladenosine transferase KsgA [Mycobacterium ulcerans Agy99] Length = 274 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 123/260 (47%), Gaps = 24/260 (9%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 ++K+ SG+ V+E+G G G+LT LL GA V +E D L ++H + Sbjct: 1 MRKVVAVSGTTRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSD 59 Query: 96 ----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 RL ++ D L + + + P ++ANLPYN+ L + ++ P +T Sbjct: 60 SEIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAEF---PSIRVVT 114 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 ++ Q EV ER+ A+ YG SV G+ + +SP VF+P P+V S ++ H Sbjct: 115 VMVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRH 174 Query: 212 -LNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRA 261 P P E+ ++ E AF +RRKT R + G N L A I+ R Sbjct: 175 ETTPWPTD-ENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRG 233 Query: 262 ENLSIEDFCRITNILTDNQD 281 E LSIEDF R +LT + D Sbjct: 234 ETLSIEDFVR---LLTRSAD 250 >gi|87302768|ref|ZP_01085579.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 5701] gi|87282651|gb|EAQ74609.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 5701] Length = 286 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 126/270 (46%), Gaps = 26/270 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L++I ++ G V+E+G G G LT+ LL ++ IE D+ Sbjct: 9 RKRFGQHWLTDAAVLERIVAAAELQPGERVLEVGPGRGALTERLLATALGELHAIELDRD 68 Query: 82 FFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L+ QH R ++++ D L+ N+ +++AN+PYNI LL + Sbjct: 69 LVAGLR----QHFAGDERFQLLEGDVLR------LNLPPADKVVANIPYNITGPLLERLV 118 Query: 139 SADTWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 P P+ L LL Q+EVGERI A S + LSV + + P F Sbjct: 119 GRLDRPLASPY-RRLVLLVQQEVGERIRAVAGSSAFSALSVRLQLLAHCRSVCAVPPRCF 177 Query: 196 FPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL- 250 PSPKV S VI P L P P L+ + + F RRK LR SL L E+ L Sbjct: 178 QPSPKVMSEVIVIDP-LPPSERLEPELAGRLEGLLKRCFAARRKMLRNSLAGLWPEDELS 236 Query: 251 ---HQAGIETNLRAENLSIEDFCRITNILT 277 +AG+ R + LS + + +T L Sbjct: 237 ERAERAGVSLRQRPQELSPQRWVELTRQLC 266 >gi|68071473|ref|XP_677650.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA] gi|56497848|emb|CAH94950.1| dimethyladenosine transferase, putative [Plasmodium berghei] Length = 381 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ KK+ GQ+ L + IL KI ++ V+EIG G GNLT LL L ++KVI I+ Sbjct: 72 ILYKKH-GQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTVKLLPL-SKKVITIDI 129 Query: 79 DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + K + N LE+ + DA+K F KF ++ + AN+PY I + L+F Sbjct: 130 DARMISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF-DVCT-----ANIPYKISSPLIFKL 183 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I+ P ++ L+FQKE ER+ A +Y RL+V + + ++ F P Sbjct: 184 IA---HRPLFKCAVLMFQKEFAERMLANVGDNNYSRLTVNVKLFCRVIKVCNVDRSSFNP 240 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S V+ IP N + + + F ++RKTL KR N+L Sbjct: 241 PPKVDSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295 >gi|294155309|ref|YP_003559693.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145] gi|291600503|gb|ADE19999.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145] Length = 255 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 17/263 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I KK GQNFL D NIL KI S L V+EIG G G LT+ +L A+ + E Sbjct: 4 EIFAKKKFGQNFLNDDNILNKIV-SIVDLKNENVLEIGPGRGALTRKILQ-DAKSLTSYE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ ILK +Q ++++ D L D + IIAN+PY I T +LF Sbjct: 62 IDRDLVDILKKEFNQK--NFKLVEGDFLNEDISNY----KDTWIIANIPYYITTDILFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + ++ L+ QKEV ERI AQKNS Y +LS+ + F + F P Sbjct: 116 LENISS---FKGAILMVQKEVAERIVAQKNSQDYSKLSITLQYYATVKKEFIVPSKCFNP 172 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253 +P V S +I N +L + + F +RRK L SLK +++ Sbjct: 173 APNVDSAIISLKFDKNKKWDI--TLNEFFKLCFLQRRKKLSYSLKTKFKIEKIKSVFETL 230 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 G + ++R + LS+ED ++ N L Sbjct: 231 GFDESIRIQQLSLEDILKLFNKL 253 >gi|296134601|ref|YP_003641843.1| dimethyladenosine transferase [Thiomonas intermedia K12] gi|295794723|gb|ADG29513.1| dimethyladenosine transferase [Thiomonas intermedia K12] Length = 268 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 21/263 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEK 78 + +K GQ+FL+D I+ I + L G ++EIG G G LT LL R V I++ Sbjct: 17 VARKRFGQHFLIDQQIIHGIVDCINPLAGERLVEIGPGLGALTLALLQRIPRLAAVEIDR 76 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + Q P+++E+I+ DAL DF F ++ + +R++ NLPYNI T LLF+ + Sbjct: 77 D-----LAARWRKQAPDKVELIEADAL--DF-NFASLGTDLRLVGNLPYNISTPLLFHLM 128 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV +R+ A +GRLSV+ WR + + D+ P F P Sbjct: 129 EVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185 Query: 199 PKVTSTVIHFIP-HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--AG 254 P+V S V+ P + +P L + AF +RRK +R SL G L Q AG Sbjct: 186 PQVDSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSL----GPWLDTQGYAG 241 Query: 255 -IETNLRAENLSIEDFCRITNIL 276 + RAE +S ++ + L Sbjct: 242 DFDLQRRAEEVSTAEYIALAQSL 264 >gi|23009722|ref|ZP_00050666.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 364 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 126/278 (45%), Gaps = 19/278 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D ++KI ++ G V+E+G G G+LT LL G Sbjct: 65 IRDLAGRLGVRPTKTLGQNFVHDGGTVRKIVRAADVRPGERVVEVGPGLGSLTLGLLEAG 124 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V+ +E D L D H +RLE++ DAL+V P ++ANL Sbjct: 125 A-SVVAVEIDPVLARQLPDTVVTHVPDVGDRLEVVGADALEV---TSLPGEPPTALVANL 180 Query: 126 PYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 PYN+ +L ++ D+ E + ++ Q EV +R+ A S YG SV W A Sbjct: 181 PYNVAVPVLLTFLERFDS----LERVLVMVQAEVADRLAAPPGSRTYGVPSVKAAWYADA 236 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKR 243 I VF+P P V S ++ P E + + AF +RRK LR +L Sbjct: 237 RRAGTIGRSVFWPVPNVDSALVALDRREPPATAATREQVFAVVDAAFAQRRKMLRSALSG 296 Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G +L A ++ R E L + F R+ L Sbjct: 297 LAGSASVAAEVLEAADVDPQARGEVLDVAAFARVAEQL 334 >gi|78184856|ref|YP_377291.1| dimethyladenosine transferase [Synechococcus sp. CC9902] gi|119365856|sp|Q3AXF3|RSMA_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78169150|gb|ABB26247.1| dimethyladenosine transferase [Synechococcus sp. CC9902] Length = 274 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 21/274 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L +I E++ V+E+G G G LT+ LL A ++ IE D+ Sbjct: 9 RKRFGQHWLRDARVLDQIVEAARLQQDDCVLEVGPGRGALTERLLASPAAQIHAIELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLLFNW 137 L D +R + + D L+ F N +++AN+PYNI LL Sbjct: 69 LVRGLHDRFGSE-SRFSLREGDVLEAPLHLVDGGFAN-----KVVANIPYNITGPLLARL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I P P ++ L LL QKEV ERI A+ + LSV +++ + P F Sbjct: 123 IGRLDRPVEPTYDCLVLLLQKEVAERIRAKPGRSSFSALSVRMQLLADCSLVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHF--IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG----EN 248 P PKV S VI P +P L S ++ + ++AF RRK LR +L + E Sbjct: 183 QPPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIDPQVLEP 242 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L GI R + ++ E + + L NQD+ Sbjct: 243 LAASVGISLQQRPQEVAAEAWVALARGL--NQDV 274 >gi|14520595|ref|NP_126070.1| dimethyladenosine transferase [Pyrococcus abyssi GE5] gi|27151615|sp|Q9V1P8|RSMA_PYRAB RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|5457811|emb|CAB49301.1| ksgA dimethyladenosine transferase [Pyrococcus abyssi GE5] Length = 269 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 19/276 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I P +GQ+FL+ +++ K E + V+E+G G G LT L + A+K Sbjct: 8 LLSKYGIRPNDRIGQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDEL-SKRAKK 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ IL++ S N +EIIQ DA+KV++ F ++++N+PY I + Sbjct: 67 VFTIELDRRIIEILRNEYSW--NNVEIIQGDAVKVEWPSFN------KVVSNIPYQISSP 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + + +E +++Q E R+TA+ +Y RLS++T ++ I Sbjct: 119 FTFKLLKME-----FERAVVMYQLEFALRMTAKPGDRNYSRLSLMTQALADVEIVMRIGK 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S ++ P + I +K + Q K LR+S LG +++ Sbjct: 174 GAFYPKPKVDSALVLITPKKDRIELNESLVKALFQHRRKVVSKALRESAHMLGIKDVKTV 233 Query: 253 AGI-----ETNLRAENLSIEDFCRITNILTDNQDIA 283 I +N R +L+ E+ I L +++ I+ Sbjct: 234 KDILSSVPHSNKRVFHLTPEEVKEIEEYLREHRIIS 269 >gi|242247433|ref|NP_001156188.1| dimethyladenosine transferase-like [Acyrthosiphon pisum] gi|239790841|dbj|BAH71955.1| ACYPI005364 [Acyrthosiphon pisum] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ KK GQ+ L + I++ + E S L TV+EIG G GNLT LL + VI E Sbjct: 18 IMFKKDFGQHILKNPLIIQGMVEKSALLPTDTVLEIGPGTGNLTVKLLE-RVKTVIACEI 76 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + LK +++ + N+L+I D LK + FFN+ ++AN+PY I + L+F Sbjct: 77 DVRLVAELKKRVMNTPYQNKLQIRVGDVLKSELP-FFNV-----LVANIPYQISSPLVFK 130 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + PF+ L+FQ+E R+ A+ Y RLS+ T + ++ + + F Sbjct: 131 LL---LHRPFFRCAVLMFQREFAYRLVAKPGDKLYCRLSINTQLLARVDLIMKVGKNNFR 187 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P PKV S V+ P P P +T+ AF ++ KTL K +N + +E Sbjct: 188 PPPKVESNVVRIEPRNPPPPINFNEWDGLTRIAFSRKNKTLGAIFK----QNAV-AVTLE 242 Query: 257 TNLRA----ENLSIEDFCRITNILTD 278 N R +N IED I L D Sbjct: 243 KNYRVYCSLKNQKIEDDFDIKQKLDD 268 >gi|124025654|ref|YP_001014770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL1A] gi|166221688|sp|A2C1Z5|RSMA_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123960722|gb|ABM75505.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. NATL1A] Length = 291 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 11/235 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L+ ++ IP+K GQ++L D +L +I +++ V+E+G G G LT+ L+ A+ + Sbjct: 7 LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFI 66 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGT 131 IE D+ LK H N+ + + D L +D E I+ +++AN+PYNI Sbjct: 67 QAIELDRDLVIGLKK-RFNHQNKFSLREGDILSAPLDAENGVTIN---KVVANIPYNITG 122 Query: 132 RLLFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LL I P +E+L LL QKEV +R+ A+ + ++ LSV K + D Sbjct: 123 PLLKRLIGELRKAPENSFETLVLLMQKEVAQRLLARPGNSNFSALSVRVQLLAKCQDVCD 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL 241 + F P+PKV S V+ P + P E L+K+ + AF RRK LR ++ Sbjct: 183 VPSKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTI 237 >gi|313664894|ref|YP_004046765.1| dimethyladenosine transferase [Mycoplasma leachii PG50] gi|312949380|gb|ADR23976.1| dimethyladenosine transferase [Mycoplasma leachii PG50] Length = 266 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 23/269 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KKY GQNF+ DLN++ +I + +IEIG G G LT+ L+ KV+VIE DQ Sbjct: 3 AKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVK-RFNKVVVIEIDQ 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138 ILK + + LEIIQ D LK+D ++ + I II+N PY I + +LF + Sbjct: 62 DMVEILK--AKFDYSNLEIIQTDVLKIDLKQLISKYDYEKISIISNTPYYITSEILFKTL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV RI + KN +Y LS+ + ++ F ++ +F+P Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNRKMFYPI 176 Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247 PKV S +I + +N +E ++ + F +RKT + Sbjct: 177 PKVDSAIISLTFNDIYKKQINDDKKFIEFVRIL----FNNKRKTILNNLNNIIQNKNKAL 232 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L + I +NLR E L I+++ ++ N++ Sbjct: 233 EYLKISNISSNLRPEQLDIDEYIKLFNLI 261 >gi|42560564|ref|NP_975015.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|62900540|sp|Q6MUM4|RSMA_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|42492060|emb|CAE76657.1| Dimethyladenosine transferase KsgA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320542|gb|ADK69185.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 266 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 23/269 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KKY GQNF+ DLN++ +I + +IEIG G G LT+ L+ KV+VIE DQ Sbjct: 3 AKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVK-RFDKVVVIEIDQ 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138 ILK H N LEIIQ D L++D ++ + I II+N PY I + +LF + Sbjct: 62 DMVEILK-AKFDHSN-LEIIQADVLEIDLKQLISKYDYEKISIISNTPYYITSEILFKTL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV RI + KN +Y LS+ + ++ F ++ +F+P Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPI 176 Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247 PKV S +I + +N +E ++ + F +RKT + Sbjct: 177 PKVDSAIISLTFNDIYKKQINDDKKFIEFVRIL----FNNKRKTILNNLNNIIQNKNKAL 232 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ I +NLR E L I+++ ++ N++ Sbjct: 233 EYLNTLNISSNLRPEQLDIDEYIKLFNLV 261 >gi|110668775|ref|YP_658586.1| dimethyladenosine transferase [Haloquadratum walsbyi DSM 16790] gi|118600870|sp|Q18GB5|RSMA_HALWD RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|109626522|emb|CAJ52985.1| dimethyladenosine transferase (rRNA methylation) [Haloquadratum walsbyi DSM 16790] Length = 296 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 119/261 (45%), Gaps = 25/261 (9%) Query: 27 QNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q+FL+D +L +I S D ++EIGAG G LT LL +G V VIE+D Sbjct: 43 QHFLIDDRVLDRIPTYLLDSTDTTHILEIGAGTGALTDRLLAVG-DTVTVIERDATLAAF 101 Query: 86 LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L++ + RL II+ DAL+V F I+NLPY I + +LF + AD Sbjct: 102 LREEFAVMIDDGRLNIIEGDALEVTLPAFTTC------ISNLPYGISSEILFELLPADC- 154 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 L ++ Q+E GER+ A + YGRLSV ++ + P F P P V S Sbjct: 155 -----PLIVMVQREFGERMAADPGTDAYGRLSVSAQHYATVEVVETVPPTAFAPEPAVDS 209 Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL--- 259 +I P E+ + + F +RRKT+R +++ ++L N Sbjct: 210 ALIRAEPRDPDYTVTDETFFLRFVKAVFTQRRKTVRNAIRNTAHISMLDTPDAVVNAADE 269 Query: 260 -----RAENLSIEDFCRITNI 275 RA +L+ +F + I Sbjct: 270 ALLSQRAGDLTPSEFAELATI 290 >gi|254384979|ref|ZP_05000314.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces sp. Mg1] gi|194343859|gb|EDX24825.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces sp. Mg1] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 25 IRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 83 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L I ++ P +R ++ DA+ V +P ++ANL Sbjct: 84 ADRVTAVEIDDILAAALPATIEARMPQRKDRFALVHSDAMLV---TELPGPAPTALVANL 140 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + D +P +L ++ Q EV +R+ A+ + YG SV W Sbjct: 141 PYNVAVPVLLTML--DRFPSIERTL-VMVQAEVADRLAAEPGNKVYGVPSVKANWYAHVK 197 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243 I VF+P+P V S ++ + PI + + AF +RRKTLR +L Sbjct: 198 RAGSIGRKVFWPAPNVDSGLVSLVRRAEPIKTSASKAEVFAVVDAAFAQRRKTLRAALAG 257 Query: 244 LGGENLLHQAGIET-----NLRAENLSIEDFCRITN 274 G +A + R E+L++E+F I Sbjct: 258 WAGSAAGAEAALVAAGVSPQARGESLTVEEFAAIAE 293 >gi|116070730|ref|ZP_01467999.1| 16S rRNA dimethylase [Synechococcus sp. BL107] gi|116066135|gb|EAU71892.1| 16S rRNA dimethylase [Synechococcus sp. BL107] Length = 274 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 126/273 (46%), Gaps = 19/273 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L +I ++ V+E+G G G LT+ LL A ++ IE D+ Sbjct: 9 RKRFGQHWLRDARVLDQIVSAARLQQDDRVLEVGPGRGALTERLLASAAAQIHAIELDRD 68 Query: 82 FFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L D S+ R + D L + F N +++AN+PYNI LL I Sbjct: 69 LVQGLHDRFGAQSRFSLREGDVLDAPLHLGDGGFAN-----KVVANIPYNITGPLLARLI 123 Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P P ++ L LL QKEV ERI AQ + LSV +++ + P F Sbjct: 124 GRLDRPVEPTYDCLVLLLQKEVAERIRAQPGRSSFSALSVRMQLLADCSLVCPVPPRCFQ 183 Query: 197 PSPKVTSTVIHF--IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG----ENL 249 P PKV S VI P +P L S ++ + ++AF RRK LR +L + E L Sbjct: 184 PPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIEPQILEPL 243 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 GI R + ++ E + + L NQD+ Sbjct: 244 AASVGISLQQRPQEVAAEAWVALARGL--NQDV 274 >gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera] Length = 383 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I S TV+EIG G GNLT LL A++V+ +E D + Sbjct: 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQ-AAQRVVAVELDARM 108 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ ++H ++L +I DALK DF +F ++AN+PY I + L+ + Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF S TLL QKE R+ A + RL+V + + D+S F P PK Sbjct: 163 AN--PF-RSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S+V+ P L T+ F K+ KTL + K Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFK 261 >gi|297193911|ref|ZP_06911309.1| dimethyladenosine transferase dimethyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720273|gb|EDY64181.1| dimethyladenosine transferase dimethyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 286 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+EIG G + L Sbjct: 15 IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVKPDDVVVEIGPG-LGSLTLGLLEA 73 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V+ +E D L ++++ P+ R ++ DA+ V + P ++ANL Sbjct: 74 ADRVVAVEIDDVLAGALPATVAARLPDRASRFSLVHSDAMHV---QELPGPPPTALVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + D +P +L ++ Q EV +R+ A + YG SV W ++ Sbjct: 131 PYNVAVPVLLHML--DRFPSIERTL-VMVQAEVADRLAAGPGNKVYGVPSVKANWYSEVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243 I +VF+P+P V S ++ + +P+ + + AF +RRKTLR +L Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVSLVRRTSPVATTASRAEVFAVVDAAFAQRRKTLRAALAG 247 Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 G L AG+ R E+L++E+F RI Sbjct: 248 WAGSPAAAEAALVAAGVSPQARGESLTVEEFARIAE 283 >gi|254431695|ref|ZP_05045398.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001] gi|197626148|gb|EDY38707.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001] Length = 300 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 119/265 (44%), Gaps = 18/265 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L +I ++ G V+EIG G G LTQ LL A V +E D+ Sbjct: 29 RKRFGQHWLTDAAVLDRIVAAAALAPGERVLEIGPGRGALTQRLLASDAAAVAAVELDRD 88 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + R E+ Q DAL + +++AN+PYNI LL + Sbjct: 89 LVAGLQQRFGRD-ARFELHQGDALT------LALPPADKVVANIPYNITGPLLERLVGRL 141 Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P P + L LL Q+EV ERI S Y LSV + + + P F P P Sbjct: 142 DHPVQPPYRRLVLLLQREVAERIRCSPGSASYSALSVRMQLLGECRSVCAVPPRCFQPPP 201 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE----NLLH 251 KV S VI PH P +L + T++ +F RRK LR SL L E L Sbjct: 202 KVQSEVIVIEPH-GPARLPEAALARTTEQLLRRSFAARRKMLRNSLVGLVPEPELQGLAR 260 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 +AGI R + + + R+ L Sbjct: 261 EAGINLQQRPQEIEPAAWLRLAAGL 285 >gi|320166025|gb|EFW42924.1| dimethyladenosine transferase [Capsaspora owczarzaki ATCC 30864] Length = 313 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 12/221 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I+ I E +G + TV+EIG G GNLT LL ++KV+ E D + Sbjct: 32 KSFGQHILKNPLIVNGIIEKAGLRNTDTVLEIGPGTGNLTMKLLE-ASKKVVACEVDVRL 90 Query: 83 FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + + + LEI+ D LK D FF++ +AN+PY I + +F + Sbjct: 91 VAELQKRVMGTPYQRNLEILVGDVLKADL-PFFDVC-----VANMPYQISSPFVFKLL-- 142 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF+ L+FQKE +R+ A+ P Y RLSV T + + + + F P P+ Sbjct: 143 -LHRPFFRCAVLMFQKEFAQRLYAKPGDPAYCRLSVNTQLLARVDHLMKVGRNNFRPPPQ 201 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 V S V+ P P P + + + F ++ KTL + Sbjct: 202 VESAVVRIEPRNPPPPINFQEWDGLVRITFVRKNKTLHAAF 242 >gi|12045322|ref|NP_073133.1| dimethyladenosine transferase [Mycoplasma genitalium G37] gi|1346403|sp|P47701|RSMA_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|3845058|gb|AAC72483.1| dimethyladenosine transferase [Mycoplasma genitalium G37] gi|166078652|gb|ABY79270.1| dimethyladenosine transferase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 259 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 128/259 (49%), Gaps = 35/259 (13%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKD 79 P + +GQNF ++L+++K+I +L+ ++EIG G G LT LL L K I I+K Sbjct: 6 PSRKLGQNFTVNLSVIKRIFAFVKNLNPQAIVEIGVGKGALTNYLLKLKIPYKGIEIDKR 65 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + +++ I ++ ++++ D LK DF FF SP+ + N+PY+I + ++ ++ Sbjct: 66 LIEYLLVEKILTED----QLVKGDILKKDFNSFFENLSPL-LCGNIPYSITSPIINKFLE 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + S L+ QKE R+ A+ NS Y + T +F I H F P P Sbjct: 121 SK-----LRSFVLMTQKEFANRLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKIT---------QEAFGKRRKTLRQSLKRLGGE--- 247 KV ST+I LE K ++ ++ F +RRK L +LK Sbjct: 176 KVDSTLI-----------LLEKNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYL 224 Query: 248 -NLLHQAGIETNLRAENLS 265 N++ + ++T++RA+ LS Sbjct: 225 LNIIQKQNLKTSIRAQELS 243 >gi|296329439|ref|ZP_06871928.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153448|gb|EFG94278.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 264 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 130/266 (48%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N ++ D L+VDF+K+ N + +++AN+PY I + ++ I Sbjct: 65 DLENTLRKKFSSKEN-YTLVMGDVLEVDFKKYINQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + ++ +F I F P P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGESEYLFTIPREFFNPIPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q + N RAEN+SI+ F + NI Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261 >gi|225431251|ref|XP_002267827.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 383 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I S TV+EIG G GNLT LL A++V+ +E D + Sbjct: 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQ-AAQRVVAVELDARM 108 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ ++H ++L +I DALK DF +F ++AN+PY I + L+ + Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF S TLL QKE R+ A + RL+V + + D+S F P PK Sbjct: 163 AN--PF-RSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S+V+ P L T+ F K+ KTL + K Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFK 261 >gi|210629940|ref|ZP_03296187.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279] gi|210160757|gb|EEA91728.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279] Length = 331 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/318 (26%), Positives = 135/318 (42%), Gaps = 64/318 (20%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQML 65 + + IL + + K +GQNFL+D +++++I AE +GS V+E+G G G LT + Sbjct: 11 ATREILEAFGLATKHRLGQNFLIDNHVIERIMDLAELTGSE---RVLEVGPGIGTLT-LA 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRII 122 L A +V IE D + P+L + HPN I DAL V + S + ++ Sbjct: 67 LVQAAGRVTSIEMDSELEPVLSAHAIDHPN-FNFIMGDALAVPPAQIAEALGGESEL-LV 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + T P ++ ++ QKEV +RI A + YG +V Sbjct: 125 ANLPYNVAATIILQFFQ--TMPSLRRAVVMV-QKEVADRIAAVAGTKVYGAYTVKLSLYG 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF-------------------------IPHLNPIPC 217 + T F++ P F P+P V S V+ + + Sbjct: 182 EVTGRFEVPPRCFMPAPHVDSAVVRIDRVGFPGTLSDRRVDAACGTDAPVSTAGSDGVLT 241 Query: 218 C-------------------LESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQA 253 C E + ++ AF +RRKT+R S+ G + Q Sbjct: 242 CDSNGGQDGASVLVLAGAPSAEDIARVVDAAFAQRRKTIRNSMSANGFDKAALDAAFAQC 301 Query: 254 GIETNLRAENLSIEDFCR 271 I + RAE LS +F + Sbjct: 302 DIASTARAETLSTIEFVQ 319 >gi|18978235|ref|NP_579592.1| dimethyladenosine transferase [Pyrococcus furiosus DSM 3638] gi|27151575|sp|Q8TH24|RSMA_PYRFU RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|18894050|gb|AAL81987.1| dimethyladenosine transferase (s-adenosylmethionine-6-n' [Pyrococcus furiosus DSM 3638] Length = 273 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 16/229 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 LS Y P+ +GQNFL+ +++ K E+S V+E+G G G LT L + A KV Sbjct: 9 LSKYNFSPRDKIGQNFLIMRDVIIKAVETSEIKKSDVVLEVGPGFGFLTDEL-SKRAGKV 67 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 IE D++ IL++ + +EIIQ DA+K+++ +F ++++N+PY I + Sbjct: 68 YAIELDKRIIEILEN--EYNWENVEIIQGDAVKIEWPEFN------KVVSNIPYQISSPF 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 F + D +E +++Q E +R+ A+ +Y RLS++ A ++ I Sbjct: 120 TFKLLKHD-----FEKAVVMYQLEFAKRMVAKPGDRNYSRLSLMVNALANAKIVMKIGRG 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F+P PKV S ++ +P P +E + + + F RRK + ++LK Sbjct: 175 AFYPKPKVDSALVLIVP--KPKDERIELNENLVKALFQHRRKLVSKALK 221 >gi|291529852|emb|CBK95437.1| dimethyladenosine transferase [Eubacterium siraeum 70/3] Length = 287 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 131/269 (48%), Gaps = 20/269 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL++ + KIAE G+ + IEIG G G LT+ L KV+ IE D Sbjct: 22 KSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGVLTRELAER-CEKVVAIEIDTGL 80 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNWIS 139 PIL + ++ N +E+I D ++ D K P + + ANLPY I + ++ + Sbjct: 81 KPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDMDVIVCANLPYYITSPVIMKLLE 139 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P +++T++ Q E +RI A S G ++ + K +F ++ F P+P Sbjct: 140 -EKLP--IKAITVMVQLEAADRICAAVGSRECGAITASINYYAKPKKLFRVNRGSFMPAP 196 Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-------KRLGGENL 249 V S VI + P P +++ ++ ++AF +RRK L + K + E Sbjct: 197 NVDSAVISLERYEQP-PYKVDNEPLFFEVIKQAFAQRRKQLANPVSAYFKIPKAVLAEK- 254 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278 + + GI RAE L++ + ++ I+ + Sbjct: 255 MTEGGIPATARAEQLTMSELVKLYEIINE 283 >gi|260494381|ref|ZP_05814512.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33] gi|260198527|gb|EEW96043.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33] Length = 264 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 128/264 (48%), Gaps = 17/264 (6%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ S N ++ D L+VD ++ N + +++AN+PY I + ++ I Sbjct: 65 DLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + + +F I F+P P Sbjct: 122 ---RDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEVEYLFTIPREFFYPIPN 177 Query: 201 VTSTV--IHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252 V S I F E L K + AF +RK + +L LG + +L+Q Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEILNQ 237 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 + N RAEN+SI+ F + NI Sbjct: 238 IEVSENERAENISIDKFIELINIF 261 >gi|225453766|ref|XP_002270274.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera] Length = 335 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 138/275 (50%), Gaps = 24/275 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQ+++L+ +I +++A+++ DG ++EIG G G+LT +LL GA V+ IEKD Sbjct: 63 PRKSLGQHYMLNSSINEQLADTADIRDGDVILEIGPGTGSLTNVLLDAGA-TVLAIEKDA 121 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFE-KFFNI----------SSPIRIIANLPYNI 129 ++++ + +RL+++Q+D +K F++ S ++++N+P+NI Sbjct: 122 HMAALVRERFAV-TDRLKVLQEDFMKCHIHPHLFSLLESKKAKNKESRYAKVVSNIPFNI 180 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMF 188 T ++ + + + LL Q E R + A + Y +++ + + F Sbjct: 181 STDVVKILLPMGD---IFSEVVLLLQDETALRLVEASLRTQEYRPINIFVNFYSDPEYKF 237 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + FFP P V + V+ F P ++S + AF +RK LR+SL+ + Sbjct: 238 KVPRTNFFPQPNVDAAVVVFKLKQAVDYPPVSSIKSFFSLVNSAFNGKRKMLRRSLQHIC 297 Query: 246 G----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L G+ R E L+++DF R+ N++ Sbjct: 298 TSIEIEEALRNVGLPATSRPEELTLDDFVRLHNLI 332 >gi|34762816|ref|ZP_00143802.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887518|gb|EAA24602.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 264 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 131/266 (49%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL +I E S + ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNRIIEVSNINENDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N + +I D L+VD K+ N S+ +++AN+PY I + ++ I Sbjct: 65 DLENTLRKKFSSKENYI-LIMGDILEVDLRKYINKST--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + +A +F I F P+P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPTPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISESL--FFKYVKAAFSNKRKNIVNNLVTLGYSKNKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q + N RAEN+SI+ F + NI Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261 >gi|260906056|ref|ZP_05914378.1| dimethyladenosine transferase [Brevibacterium linens BL2] Length = 302 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 27/283 (9%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + + P K GQNF++D N ++ I S+ +V+EIG G G+LT LL Sbjct: 6 ARDIREIAADIGLRPTKQKGQNFVIDPNTVRSIVASAKLQGHSSVVEIGPGLGSLTLGLL 65 Query: 67 TLGARKVIVIEKDQ---QFFPIL------KDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G V +E D+ Q P D +++ E++ DAL+V ++ Sbjct: 66 EAG-HDVTAVEIDEVLAQRLPATVKKYGHTDDAAEGAANFELVNADALRVTELP----TA 120 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P ++ANLPYN+ +L +++ + +P +S+ ++ Q EV ER+ A S YG SV Sbjct: 121 PEALVANLPYNVAVPVLLHFL--EIFPSL-KSVLVMVQLEVAERLAAGPGSRTYGVPSVK 177 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRR 234 W T+ I +VF+P+P + S ++H + L+ ++ + AF +RR Sbjct: 178 AQWYGDVTLAGRIGKNVFWPAPNIDSGLVHI--DVTRTQRDLQQRRRLFSVVDAAFAQRR 235 Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 KTLR +L G E L AGI+ R E L + DF R+ Sbjct: 236 KTLRAALATWAGSPQQAEECLRAAGIDPKTRGEALGVADFERL 278 >gi|159900605|ref|YP_001546852.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC 23779] gi|159893644|gb|ABX06724.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC 23779] Length = 288 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 29/285 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ L+ + P K MGQNFL+D LK E + V+E+G G G LT LL Sbjct: 10 VRGALNSIGVRPSKSMGQNFLIDPTPLKLALEHAEVNPNDVVVEVGPGLGVLTWELLN-A 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-----SPIRIIAN 124 A VI IE D + L+ ++ P L I++ D L++ + + +++AN Sbjct: 69 AGHVISIELDPRLAGRLRTEFAERP--LTIVESDVLEIAPSAMLAAAGLPADTSYKLVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT---GWR 181 +PY I + LL +++ D+ P + +L Q EV +RITA+ G LS+L Sbjct: 127 IPYAITSPLLRHFLEGDSPPSL---MMVLMQWEVADRITAKP-----GDLSILAHSVQLY 178 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQS 240 A ++ + F P+P V S ++ N +P ++L K+ + F + RK L S Sbjct: 179 ATAEIIARVPAASFLPAPAVDSALVLMRRRATNAVPTAPKALFKVIRAGFSQARKKLINS 238 Query: 241 L------KRLGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276 L + G E +L QA I+ NLRAE L++E + R+T L Sbjct: 239 LAGGLAGQGFGKEQVLAAIVQAEIDPNLRAEVLTLEQWARLTETL 283 >gi|257463687|ref|ZP_05628077.1| dimethyladenosine transferase [Fusobacterium sp. D12] gi|317061234|ref|ZP_07925719.1| dimethyladenosine transferase [Fusobacterium sp. D12] gi|313686910|gb|EFS23745.1| dimethyladenosine transferase [Fusobacterium sp. D12] Length = 268 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 133/270 (49%), Gaps = 29/270 (10%) Query: 22 KKYMGQNFLL-DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL IL +I E S ++EIG G G LT++LL A+ V+ IE D+ Sbjct: 6 KKKYGQNFLTKQAEILARILEVSEVQKQDNILEIGPGEGALTELLLQ-EAKSVVNIEIDE 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 PIL+ + N +I D L+VDF K+ + +++AN+PY I + ++ I Sbjct: 65 DLKPILEKKFGNNEN-YRLIMGDVLEVDFSKY--MEEGTKVVANIPYYITSPIIQKIIEH 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + P + L+ QKEVGERI A++ L++ + +A +F I F P PK Sbjct: 122 RSLIP---AAFLMVQKEVGERICAKRGRERSA-LTLSVEYFARAEYLFTIPKEYFTPVPK 177 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKTLRQSLKRLG------G 246 V S I H+ E K+I +E F K +RK L + LG Sbjct: 178 VDSAFIGI--HMKERE---EIAKQIPEELFFKYVKAGFWNKRKNLVNNFSSLGFSKTEIK 232 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+L+ + GI N RAENLS++++ + L Sbjct: 233 ESLI-KLGIAENERAENLSLQEWFSVIETL 261 >gi|163841724|ref|YP_001626129.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC 33209] gi|162955200|gb|ABY24715.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC 33209] Length = 297 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 24/281 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K +GQNF++D N +++I ++ TV+EIG G G+LT LL Sbjct: 21 AADIRRLAAELDVRPTKTLGQNFVIDGNTIRRIVAAAKIAPSETVLEIGPGLGSLTLGLL 80 Query: 67 TLGARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRII 122 A V+ +E D + L + IS P + +++ DALKV P ++ Sbjct: 81 DAAAH-VVAVEIDAKLAARLPQTISEFRPEKSGAFDVVTADALKVTELP----QEPTALV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTG 179 ANLPYN+ ++ + + ++ SL ++ Q EV +R+ A S YG SV Sbjct: 136 ANLPYNVAVPVVLHLLE------YFLSLEHGLVMVQDEVADRLAAPPGSKTYGVPSVKAA 189 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR 238 W + I +VF+P+PK++S ++ FI P + + AF +RRKT+R Sbjct: 190 WYAQVRKAGVIGMNVFWPAPKISSGLVEFIRREPPQTRAERREVFAVIDAAFAQRRKTVR 249 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 +L G E +L AG++ R E L I F RI Sbjct: 250 AALAGWAGSGADAEQILIAAGVDPRARGEVLDIAAFSRIAE 290 >gi|294338548|emb|CAZ86877.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Thiomonas sp. 3As] Length = 268 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 21/263 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEK 78 + +K GQ+FL+D I++ I + ++EIG G G LT LL R V I++ Sbjct: 17 VARKRFGQHFLIDQQIIQGIVDCINPQADERLVEIGPGLGALTLALLQRIPRLAAVEIDR 76 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + S Q P+++E+I+ DAL DF F ++ + +R++ NLPYNI T LLF+ + Sbjct: 77 D-----LAARWSKQAPDKVELIEADAL--DF-NFASLGTDLRLVGNLPYNISTPLLFHLM 128 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV +R+ A +GRLSV+ WR + + D+ P F P Sbjct: 129 DVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185 Query: 199 PKVTSTVIHFIP-HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--AG 254 PKV S V+ P + +P L + AF +RRK +R SL G L Q AG Sbjct: 186 PKVNSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSL----GPWLDTQGYAG 241 Query: 255 -IETNLRAENLSIEDFCRITNIL 276 + RAE +S ++ + L Sbjct: 242 DFDLQRRAEEVSTAEYIALAQSL 264 >gi|291556434|emb|CBL33551.1| dimethyladenosine transferase [Eubacterium siraeum V10Sc8a] Length = 287 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 131/269 (48%), Gaps = 20/269 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL++ + KIAE G+ + IEIG G G LT+ L KV+ IE D Sbjct: 22 KSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGVLTRELAK-RCEKVVAIEIDTGL 80 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNWIS 139 PIL + ++ N +E+I D ++ D K P + + ANLPY I + ++ + Sbjct: 81 KPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDMDVIVCANLPYYITSPVIMKLLE 139 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P +++T++ Q E +RI A S G ++ + K +F ++ F P+P Sbjct: 140 -EKLP--IKAITVMVQLEAADRICAAVGSRECGAITASINYYAKPKKLFRVNRGSFMPAP 196 Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-------KRLGGENL 249 V S VI + P P +++ ++ ++AF +RRK L + K + E Sbjct: 197 NVDSAVISLERYEQP-PYKVDNEPLFFEVIKQAFAQRRKQLANPVSAYFKIPKAVLAEK- 254 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278 + + GI RAE L++ + ++ I+ + Sbjct: 255 MTEGGIPATARAEQLTMAELVKLYEIIDE 283 >gi|27151613|sp|Q9RED9|RSMA_BURSP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|6687038|emb|CAB64788.1| KsgA, high level kasugamycin resistance protein [Burkholderia sp.] Length = 277 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 11/263 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD 79 +K GQ+FL+D ++ I + ++EIG G G LT LL GA ++ IE D Sbjct: 14 RKRFGQHFLIDSAVIDAIVSAIAPAPQDCLVEIGPGLGALTWPLLERLGGAGRLHAIEMD 73 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138 + L+ + L + DAL+ DF + + +RI+ NLPYNI + LLF+ + Sbjct: 74 RDLAAHLQRLGH---ASLILHAGDALRFDFAQLARAEQARLRIVGNLPYNISSPLLFHLL 130 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 D + + Q+EV RI A S HYGRLSV+ R +FD+ P F P Sbjct: 131 --DEMNEVVDQ-HFMLQREVAARIAAAPGSAHYGRLSVMLQSRYAVERLFDVPPCAFAPP 187 Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P V S V+ PH + L+ + + AF +RRK LR +L G + Sbjct: 188 PAVHSAVLRMAPHASRALPQLDWARFAALVRAAFSQRRKILRHTLSVYQKTPDFDALGFD 247 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RA+ + + ++ ++ + N Sbjct: 248 HGRRAQEVPVGEYLKLAQHIEQN 270 >gi|213966088|ref|ZP_03394276.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46] gi|213951286|gb|EEB62680.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46] Length = 301 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 134/292 (45%), Gaps = 32/292 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + I+P K +GQNF+ D N +++I ++ + +E+G G G+LT LL Sbjct: 14 VRDLAAQLDIVPTKKLGQNFVHDANTVRRIVAAADLPEDSYPVEVGPGLGSLTLGLLEHC 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 R V E D + L ++ LE+I+ DALKV E F ++P ++ANLPY Sbjct: 74 GRAAAV-EIDHRLAARLPQTVTERAEGCALELIEKDALKVSREDFQ--TAPDALVANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ +L + ++ P + ++ Q EV +R+ AQ S YG SV + Sbjct: 131 NVSVPVLLHMLAEL---PTIRRVLVMVQSEVADRLAAQPGSKIYGVPSVKAAYYGTVRRA 187 Query: 188 FDISPHVFFPSPKVTSTVIHF----------------IPHLNP---IPCCLESLKKITQE 228 I PHVF+P PKV S ++ P P P L + Sbjct: 188 GAIGPHVFWPVPKVDSGLVRIDCYARSDAPETSDVSGAPEAAPWEISPQFRARLFPLIDA 247 Query: 229 AFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275 AF +RRKTLR +L + G L AGI+ R E L I DF R+ + Sbjct: 248 AFAQRRKTLRAALSGIYGSGAAAEEALMAAGIDPRQRGEKLEIADFVRLAEV 299 >gi|290959782|ref|YP_003490964.1| SAM-binding methyltransferase [Streptomyces scabiei 87.22] gi|260649308|emb|CBG72423.1| putative SAM-binding methyltransferase [Streptomyces scabiei 87.22] Length = 316 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 16/275 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ TV+E+G G G+LT LL Sbjct: 14 VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTADVRPQDTVVEVGPGLGSLTLALLETA 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 R V D + I+++ P +R ++ DA++V P ++ANLP Sbjct: 74 DRVTAVEIDDVLAAALPATIAARMPARADRFALVHSDAMQV---TELPGPPPTALVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YN+ +L + + +T+P +L ++ Q EV +R+ A S YG SV W + Sbjct: 131 YNVAVPVLLHML--ETFPSIERTL-VMVQAEVADRLAAGPGSKVYGVPSVKANWYAEVKR 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR-----Q 239 I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 188 AGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTAATRREVFTVVDAAFAQRRKTLRAALAGW 247 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L +E+F I Sbjct: 248 AGSAAAAEAALVAAGVSPQARGESLGVEEFAAIAE 282 >gi|58613497|gb|AAW79335.1| chloroplast dimethyladenosine synthase [Heterocapsa triquetra] Length = 395 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 136/270 (50%), Gaps = 25/270 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ + QNFL D N + K+ + S G V+E+G G G LT L +++ ++ Sbjct: 112 PKQSLSQNFLADPNYVFKMVNAIEDDSPGGKQVLELGPGTGALTSRLHPRFP-EMMAVDL 170 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137 DQ+ +L +Q+ +I+ D L +++ K + P+ I+ NLPY++ +++LF Sbjct: 171 DQRAMRVL----AQNVPGCTVIRSDVLLINYTKLAEVRGGPLTIVGNLPYHVTSQILFTL 226 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 AD ++ + QKEV ERI A+ N+ YG LSV ++FDI P+ FFP Sbjct: 227 --ADHAKSVKDA-HVTMQKEVAERIVARPNTKKYGILSVCFQLYADPKILFDIPPNAFFP 283 Query: 198 SPKVTSTVI--HFIP------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247 P V S+ + +F LN P +L+ +T AF RRK L+ SLK L Sbjct: 284 RPNVMSSYVKLNFADAEERRLALNVDP---RNLRNVTTRAFRMRRKMLQNSLKNLLDCXX 340 Query: 248 NLLHQAGIE-TNLRAENLSIEDFCRITNIL 276 L+++ E LR E + +F +T +L Sbjct: 341 TLINELPEEYAKLRPEQIEPWEFVHLTQLL 370 >gi|194476720|ref|YP_002048899.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella chromatophora] gi|171191727|gb|ACB42689.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella chromatophora] Length = 284 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 136/271 (50%), Gaps = 15/271 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 +K GQ++L D +IL KI ++ S D I V+EIG+G G LT+ LL A + +E D+ Sbjct: 9 RKDFGQHWLKDKSILNKIILAADLSADDI-VLEIGSGRGALTESLLASSALLTLAVELDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +L+ H R +I+ D L+++F + +P +++AN+PYNI LL + + Sbjct: 68 DLASMLRKRLGTH-TRFALIEGDILRINFPNA-STYTPNKVVANIPYNITGPLLKRLLGS 125 Query: 141 DTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P ++ + LL Q+EVG+RI A Y LSV + + + PH F PS Sbjct: 126 LNKPLNKPYKKIVLLVQQEVGDRIRANPGHTSYSALSVKMQLLARCYSVCIVPPHCFDPS 185 Query: 199 PKVTSTVIHFIPHLNP----IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250 P V S VI P LNP +P ++++ + F RRK LR SL L E ++ Sbjct: 186 PSVVSEVIVLEP-LNPDQHLMPELAIRVEELLKFCFSSRRKMLRNSLTNLVPIKFLEIVI 244 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQD 281 ++GI R + L+ + + L+ D Sbjct: 245 AKSGISLEQRPQELTPSQWVDLAASLSKFSD 275 >gi|157872123|ref|XP_001684610.1| ribosomal RNA adenine dimethylase family protein [Leishmania major strain Friedlin] gi|68127680|emb|CAJ05804.1| putative ribosomal RNA adenine dimethylase family protein [Leishmania major strain Friedlin] Length = 374 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 13/231 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +KT S I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL Sbjct: 57 SFGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KVI E D + L P ++L+II+ + L+ DF +F + +AN Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPRF------DKCVAN 169 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235 + + IS + F P PKV S+VI P P E + + F ++ K Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKYPPPDVDFEEWDGLVKMLFSRKNK 276 >gi|33865586|ref|NP_897145.1| dimethyladenosine transferase [Synechococcus sp. WH 8102] gi|62900567|sp|Q7U7D3|RSMA_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33632755|emb|CAE07567.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 8102] Length = 302 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 15/235 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L +I ++ V+E+G G G LT+ LL+ A V +E D+ Sbjct: 9 RKRFGQHWLKDQTVLDRIVAAADLQPSDRVLEVGPGRGALTERLLSSPAAAVQAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ + P R + Q D L++ + +++ +++AN+PYNI LL + Sbjct: 69 LVDGLRERFAGDP-RFSLRQGDVLELPLQLEDGVAA-SKVVANIPYNITGPLLDRLVGRL 126 Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P P ++ L LL QK+V ERI A+ + LSV + T + + P F P P Sbjct: 127 DRPVEPPYQRLVLLVQKQVAERIRARPGHSSFSALSVRMQLLARCTTVCPVPPRCFQPPP 186 Query: 200 KVTSTVIHFIPHLNPIPC-------CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 KV S VI ++P+P ++ + ++AF RRK LR +L L E Sbjct: 187 KVQSEVI----QIDPLPADKRLPSDIARRVESLLRQAFLARRKMLRNTLASLAPE 237 >gi|229009551|ref|ZP_04166778.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048] gi|229053888|ref|ZP_04195323.1| Dimethyladenosine transferase [Bacillus cereus AH603] gi|229131049|ref|ZP_04259962.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196] gi|229165030|ref|ZP_04292826.1| Dimethyladenosine transferase [Bacillus cereus AH621] gi|228618415|gb|EEK75444.1| Dimethyladenosine transferase [Bacillus cereus AH621] gi|228652386|gb|EEL08310.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196] gi|228721429|gb|EEL72949.1| Dimethyladenosine transferase [Bacillus cereus AH603] gi|228751695|gb|EEM01494.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048] Length = 228 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 19/222 (8%) Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV+ E DQ+ PIL + + + N + +I D LK D F + F + ++ANL Sbjct: 5 AKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANL 63 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ Sbjct: 64 PYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVE 120 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 121 TVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSN 180 Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 181 NLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 222 >gi|254416619|ref|ZP_05030370.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420] gi|196176585|gb|EDX71598.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420] Length = 283 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 13/267 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K Q++L L +I ++ ++EIG G G LT+ LL ++ +E D+ Sbjct: 7 KQFAQHWLRSEKALNQIITAAKLQPRDRLLEIGPGTGVLTRRLLG-EVESLVAVEIDRDL 65 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFNWI 138 L Q+ N L ++Q D L ++ + F + SP +++AN+PYNI +L + Sbjct: 66 CQRLVKSLGQNENFL-LLQGDILSLNLAEHLAAFPHFQSPNKVVANIPYNITGPILQTLL 124 Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P P +E + LL QKEV +R+ A+ S +G LSV + + D+ F Sbjct: 125 GTIAQPITPAFELIVLLVQKEVAQRLCAKPGSKAFGALSVRVQYLADCDWICDVPAIAFS 184 Query: 197 PSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLH 251 P PKV S V+ P + +P + L+ + + F +RK LR +LK L + LL Sbjct: 185 PPPKVDSAVVRLRPRIVDPSADNPQQLETLVKLGFASKRKMLRNNLKSLCDRDKINQLLE 244 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 Q RAE+LS+ + + N L + Sbjct: 245 QVDSHPQARAEDLSVSQWVALANRLNE 271 >gi|184201384|ref|YP_001855591.1| dimethyladenosine transferase [Kocuria rhizophila DC2201] gi|183581614|dbj|BAG30085.1| dimethyladenosine transferase [Kocuria rhizophila DC2201] Length = 396 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 36/285 (12%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + I P K +GQNF++D N +++I ++ V+E+G G + L Sbjct: 16 IRELAETAGIRPTKTLGQNFVIDPNTIRRIVAAAHLAPEEHVLEVGPG-LGSLTLGLLAA 74 Query: 70 ARKVIVIEKD-----------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 + V +E D +FFP D + RL +++ DA +V + + P Sbjct: 75 SSAVTAVEIDPPLARQLPETVARFFP---DAAP----RLSVVEADAARV--RELPGGAEP 125 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++ANLPYN+ +L + + +T+P L ++ Q EV +R+ A S YG SV Sbjct: 126 TALVANLPYNVAVPVLLHIL--ETFPSIRHGL-VMVQDEVADRLAAGPGSRVYGVPSVKA 182 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK----KITQEAFGKRR 234 W + I +VF+P+PK+ S ++ P E L+ + AF +RR Sbjct: 183 SWYAEVRKAGVIGKNVFWPAPKIASGLVRLERRE---PPAEERLRVPTFAVVDAAFAQRR 239 Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 KTLR +L G E +L AG++ R E L + DF RI Sbjct: 240 KTLRAALSGWAGSGARAEEILRAAGVDPAERGEKLGVADFARIAE 284 >gi|237744029|ref|ZP_04574510.1| dimethyladenosine transferase [Fusobacterium sp. 7_1] gi|229431258|gb|EEO41470.1| dimethyladenosine transferase [Fusobacterium sp. 7_1] Length = 264 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 17/264 (6%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ S N ++ D L+VD ++ N + +++AN+PY I + ++ I Sbjct: 65 DLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + +A +F I F P P Sbjct: 122 ---RDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPIPN 177 Query: 201 VTSTV--IHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252 V S I F E L K + AF +RK + +L LG + +L+Q Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEILNQ 237 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 + N RAEN+SI+ F + NI Sbjct: 238 IEVSENERAENISIDKFIELINIF 261 >gi|300711086|ref|YP_003736900.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3] gi|299124769|gb|ADJ15108.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3] Length = 277 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 23/235 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 Q+FL+D +L ++ + ++D V+EIGAGPG LT L + A +V +E+D Sbjct: 21 QHFLIDDRVLDRLPTYATAIDADLSHVLEIGAGPGALTDRLCRV-ADRVTAVERDPDLVS 79 Query: 85 ILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ + L +++ DAL V +F ++NLPY + +++ F Sbjct: 80 FLRREFADEIADGTLSVVEGDALDVSLPEF------TACLSNLPYGVSSQIAFRLF---- 129 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L L+FQ+E ER+ A+ N+P YGRLSV ++ + F P P V Sbjct: 130 --PRKRPLVLMFQREFAERMVAEPNTPEYGRLSVSAQHYADPEIVETVPKEAFSPPPAVE 187 Query: 203 STVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 S ++ P E+ + + F +RRKTLR +++ G H +G+E Sbjct: 188 SALVRARPRDPEYTVSDEAFFLRFVKALFTQRRKTLRNAIRNTG-----HISGLE 237 >gi|225714284|gb|ACO12988.1| Probable dimethyladenosine transferase [Lepeophtheirus salmonis] Length = 312 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 12/215 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E SG TV+EIG G GNLT LL ++VIV E D + Sbjct: 33 LGQHILKNPAVVDSIVEESGLRSTDTVLEIGPGTGNLTAKLLE-KVKRVIVCEVDPRMVA 91 Query: 85 ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ S + ++L+II DA+K D FF++ +AN+PY I + L+F + Sbjct: 92 ELQKHFQHSSYKSKLDIIVGDAIKTDLP-FFDVC-----VANVPYQISSPLVFKLL---L 142 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E +R+ A Y RLS+ T + + + + F P PKV Sbjct: 143 HRPFFRVAVLMFQREFAQRLIAPPGDKLYCRLSINTQLLSTVHHLLKVGKNNFRPPPKVE 202 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 S+V+ P P P + +T+ F ++ KTL Sbjct: 203 SSVVRIEPKNPPPPINFKEWDGLTRICFVRKNKTL 237 >gi|312879958|ref|ZP_07739758.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260] gi|310783249|gb|EFQ23647.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260] Length = 287 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 8/259 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL+D +++ + ++ V+E+G G G LT+ LL RKV +E D++ Sbjct: 10 RTEIGQNFLVDPKVVRDLVAAAAPDPDTVVLEVGPGKGILTEALLGSPCRKVFSLEIDRR 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L+ + +++ + ++ DAL+V F+ P + ANLPY+I T L++ ++ Sbjct: 70 LEPFLEPLFARYAPKGTLLWGDALRVTFQDLLP-EIPHLVAANLPYHITTPLIWKFLEEL 128 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T P +L L+ Q+E R+ AQ+ S L + + +SP F P P+V Sbjct: 129 T-PRGTRTLVLMVQREAAWRLMAQEGSRDRTPLGITLQRMGTLRKVRAVSPGAFRPIPQV 187 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------LKRLGGENLLHQAGI 255 ST++ P S + + +F +RRKTL + L R E L + Sbjct: 188 ASTILEIRIQREPDLANDPSWRAFVRGSFAQRRKTLVNNWIAGWRLPREEAEGRLAPLAL 247 Query: 256 ETNLRAENLSIEDFCRITN 274 R E L++ + R+ Sbjct: 248 PRTARPEELTLPQWIRLAQ 266 >gi|254422682|ref|ZP_05036400.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335] gi|196190171|gb|EDX85135.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335] Length = 302 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 19/270 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L +L +I + +G V+EIG G G LTQ LL A KV+ +E D+ Sbjct: 30 RKRFGQHWLCSDQVLNQIVRAGELAEGDLVLEIGPGQGVLTQRLLDTSA-KVLAVEIDRD 88 Query: 82 FFPILKD--ISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTRLLFN 136 L D I+ + +I+ D L+++F++ F + P +++AN+PY I +L Sbjct: 89 LCLQLSDQFIADMASGQFRLIESDFLELNFDQALLDFELDRPNKVVANIPYYITAPILEK 148 Query: 137 WISADTWP-PF-WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + P PF + ++ LL QKE+ +R+ AQ + G L++ + + + + P Sbjct: 149 LLGTMRSPNPFPFSNIVLLVQKEISDRLCAQPGTRANGALTIRVQYLAECEEICLVPPSA 208 Query: 195 FFPSPKVTSTVIHFIPH--LNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-- 248 F P+PKV S V+ P L P P L L K+ F ++RK LR +L+ + + Sbjct: 209 FKPTPKVDSAVVRLRPRPFLTPAEDPIFLSQLVKL---GFSQKRKMLRNNLQSIVDRDTL 265 Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL + RAE L + ++ ++N + Sbjct: 266 SALLESLSLNPQTRAEGLGVGEWVALSNAV 295 >gi|237742501|ref|ZP_04572982.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13] gi|229430149|gb|EEO40361.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13] Length = 264 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + N IL KI E S D ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKNEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N ++ D L+VD K+ N + +++AN+PY I + ++ I Sbjct: 65 DLENTLRKKFSPKEN-YTLVMGDVLEVDLRKYINQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + ++ +F I F P P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGESEYLFTIPREFFNPIPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q + N RAEN+SI+ F + NI Sbjct: 236 NQIEVSENERAENISIDKFIELINIF 261 >gi|119953374|ref|YP_945583.1| dimethyladenosine transferase [Borrelia turicatae 91E135] gi|119862145|gb|AAX17913.1| dimethyladenosine transferase [Borrelia turicatae 91E135] Length = 278 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 145/284 (51%), Gaps = 14/284 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K+ L+ I P+K GQN+L++ +I +KI ++ + + EIG G G Sbjct: 1 MNINYNSINSIKSALASKNIAPRKIWGQNYLINEHIREKIVDTLEIKENENIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + V E D ++ IL + Q N ++I+ D LK ++ NI+ Sbjct: 61 AMTIILLK-KTNFLTVFEIDPKYSEILNEQFGQFKN-FKLIKGDFLKTYKQERQNIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI +++ IS + QKE+ +R+ A++ + +Y +VL Sbjct: 116 KIFSNLPYNIASKV----ISMLIEDGILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI F+P PKV ST + IP I ++ K+ + F RRK L+ Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKRVIK-DFKAFNKLVRTVFISRRKKLKN 230 Query: 240 SLKRLGGE-NLLHQAGIETNL--RAENLSIEDFCRITNILTDNQ 280 ++ + ++L + ++ L R E +S+++F I+N LT N Sbjct: 231 TIINFTKDGSILEEDFLKRFLDKRPEEISVKEFITISNKLTTNH 274 >gi|312194501|ref|YP_004014562.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c] gi|311225837|gb|ADP78692.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c] Length = 342 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 125/295 (42%), Gaps = 47/295 (15%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K GQNFL+D N ++++ +G V+E+G G G+LT LL AR+V+ +E D Sbjct: 38 PTKRRGQNFLVDPNTVRRLVRLAGIGPDDVVLEVGPGIGSLTLGLLG-AARRVLAVEVDP 96 Query: 81 QFFPILKD-----ISSQHPNRLEIIQDDALKV-------DFEKFFNISSPIR-------- 120 L + RL ++ DAL++ + ++ + P Sbjct: 97 ALAAALPATAAARLDPATAGRLTVLTRDALRLVPADLPGEPDQPIGAAGPASASGVAGPA 156 Query: 121 -----------------IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 + ANLPYNI LL + + +P L ++ Q EV +R+T Sbjct: 157 SGAGAGSPGGAAGAPTVLAANLPYNIAVPLLLGLL--ERFPSLERGL-VMVQAEVADRLT 213 Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-L 222 + YG SV W + + VF+P P V S ++ F P P L + + Sbjct: 214 SPPGGRVYGVPSVKLAWYAGSRSAGAVPRSVFWPVPNVDSGLVAFTRRPAPAPSELRADV 273 Query: 223 KKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 AF +RRKTLR +L G + L AG++ R E L I +CR+ Sbjct: 274 FAAIDAAFAQRRKTLRTALAGWAGSPAAVDRLTRAAGVDPGARGETLDIAAYCRL 328 >gi|224001108|ref|XP_002290226.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335] gi|220973648|gb|EED91978.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 23/277 (8%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 N + SLK+ ++ I P +GQ+FL + ++ I +G +++EIG G GN+T Sbjct: 35 NEGAASLKSAGTNL-IAPNTSLGQHFLKNPAVVTAIVAKAGLKPTDSILEIGPGTGNMTV 93 Query: 64 MLLTLGARKVIVIEKDQQFF-PILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRI 121 LL ++ V+ IE D + +LK + R L++IQ DA+K F FF++ Sbjct: 94 PLLQ-QSKSVVAIEYDTRMVREVLKRVEGTSEERKLKVIQGDAIKTRFP-FFDVC----- 146 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +AN+PY I + L+F +S P + ++FQ+E R+TA+ Y RLSV T Sbjct: 147 VANVPYQISSALVFKLLSHR---PMFRCAVMMFQEEFALRLTARPGEALYCRLSVNTQLL 203 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 K + + + F P PKV S V+ P P + + F ++ KTLR L Sbjct: 204 AKVDQLMKVGRNNFRPPPKVESRVVRIELRNPPPPVNFTEWDGMIRLLFNRKNKTLRSVL 263 Query: 242 K-----RLGGENL-----LHQAGIETNLRAENLSIED 268 ++ EN+ L+ A + T + + IED Sbjct: 264 MTKPTIKMLDENMRTQRALNGASMNTENKTADQIIED 300 >gi|319950588|ref|ZP_08024496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Dietzia cinnamea P4] gi|319435727|gb|EFV90939.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Dietzia cinnamea P4] Length = 244 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 13/247 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N ++KI +SG TVIE+G G G+LT LL Sbjct: 1 MRALAAELGVTPTKTLGQNFVHDANTVRKIVTASGVGRDDTVIEVGPGLGSLTLPLLDAA 60 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLE----IIQDDALKVDFEKFFNISSPIRIIANL 125 R V+ +E D L ++ RL ++ DAL V SP ++ANL Sbjct: 61 GR-VVAVEIDPVLAARLPRTVAERAPRLAELLTVVGADALAVSAADLGE-PSPTALVANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + ++ P + ++ Q EV +R+ A S YG SV G+ Sbjct: 119 PYNVSVPVLLHLLAEV---PTIRTALVMVQLEVADRLAAAPGSRVYGVPSVKAGFFGTVR 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQSL 241 + +VF+P P V S ++ + P E ++ + AF +RRKTLR +L Sbjct: 176 RTGVVGRNVFWPVPNVESGLVRIDAYPEAPWDLGAEHRRRVFAVVDAAFAQRRKTLRAAL 235 Query: 242 KRLGGEN 248 G Sbjct: 236 SGWAGSG 242 >gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 338 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 135/277 (48%), Gaps = 26/277 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQ+++L+ + +++ ++ +G V+EIG G G+LT +LL GA V+ IEKD Sbjct: 66 PRKSLGQHYMLNSEVNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGA-TVLAIEKDA 124 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----------SPIR--IIANLPYN 128 I+++ S H +R +++Q+D +K +F +S P R ++AN+P+N Sbjct: 125 HMAAIVRERFS-HTDRFKLLQEDFVKCHI-RFHMLSLLENMTSLNEKPRRAKVVANIPFN 182 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMM 187 I T ++ + + LL Q+E R+ + Y ++V + + Sbjct: 183 ISTDVVKQLLPMGD---IISEVALLLQEETASRLVESSLRTSEYRPINVFVNFYSDPVYK 239 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + FFP P V + V+ F P +S + AF +RK LR+SL+ + Sbjct: 240 FKVPRSNFFPQPNVDAAVVTFKLKQTADYPAVSSSKSFFSLVNSAFNGKRKMLRRSLQHI 299 Query: 245 GGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277 + QA G+ R E L+++DF ++ N++ Sbjct: 300 CTSPEIEQALINVGLPATSRPEELTLDDFVKLHNLIA 336 >gi|91790683|ref|YP_551635.1| dimethyladenosine transferase [Polaromonas sp. JS666] gi|118600882|sp|Q121Q5|RSMA_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91699908|gb|ABE46737.1| dimethyladenosine transferase [Polaromonas sp. JS666] Length = 330 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 131/317 (41%), Gaps = 72/317 (22%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76 K IP+K GQ+FL D I++ I ++ G V+EIG G LTQ L+ LG VI + Sbjct: 19 KHIPRKRFGQHFLTDQGIIEGIVQAIAPRAGQAVVEIGPGLAALTQPLVERLGHLTVIEL 78 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY------- 127 ++D L HP L +++ D LKVDF + P+R A LP Sbjct: 79 DRD------LAQQLRAHPQ-LTVVESDVLKVDFRQLAERLQHGPVR-SAGLPQAETAPKG 130 Query: 128 --------NIGTRLLFNWISADTWP-----------------------PFWESLTLLF-- 154 G R + P P+ S +LF Sbjct: 131 LEPAGSSSQQGPRDWLRQTAGAAAPSRGSAVHEVTSVGAHKLRVVGNLPYNISTPILFHL 190 Query: 155 --------------QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 QKEV +R+ A ++ YGRLSV+ WR + + P F P P+ Sbjct: 191 LDAVDVIEDQHFMLQKEVIDRMVAAPSTSDYGRLSVMLQWRYAMENVLFVPPQSFDPPPR 250 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AGIET 257 V S V+ +PH +P ++ L ++ Q AF +RRK LR +L G+ L + + Sbjct: 251 VDSAVVRMVPHAHPAALDVKLLSQLVQVAFSQRRKLLRHTL----GQWLTARGFPGAFDV 306 Query: 258 NLRAENLSIEDFCRITN 274 RAE + + ++ + Sbjct: 307 QRRAEEVPVAEYVALAQ 323 >gi|153823926|ref|ZP_01976593.1| dimethyladenosine transferase [Vibrio cholerae B33] gi|126518553|gb|EAZ75776.1| dimethyladenosine transferase [Vibrio cholerae B33] Length = 209 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 11/193 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + G ++EIG G G +T+ + K VIE D+ Sbjct: 12 RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70 Query: 82 FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L++ HP ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F+ Sbjct: 71 LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV R+ A + YGRL+V+ + K + ++ P F P Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183 Query: 199 PKVTSTVIHFIPH 211 PKV S V+ +P+ Sbjct: 184 PKVDSAVVRLVPY 196 >gi|260434330|ref|ZP_05788300.1| dimethyladenosine transferase [Synechococcus sp. WH 8109] gi|260412204|gb|EEX05500.1| dimethyladenosine transferase [Synechococcus sp. WH 8109] Length = 274 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 11/253 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D ++L++I E++ V+E+G G G LT+ LL G + V IE D+ Sbjct: 9 RKRFGQHWLRDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ P + Q D L+ E + +++AN+PYNI LL + Sbjct: 69 LVDGLQERFEAQPG-FSLHQGDVLEAPME-LSDGRIADKVVANIPYNITGPLLERLVGRL 126 Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P P ++ L LL QKEV ERI A+ + LSV + + + P F P P Sbjct: 127 DRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCRSVCPVPPRCFQPPP 186 Query: 200 KVTSTVIHF--IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252 KV S VI +P + P ++ + ++AF RRK LR +L + + L + Sbjct: 187 KVQSEVICLEPLPASERVEPALAARVESLLKQAFLARRKMLRNTLAGVAEPDRLKELAAS 246 Query: 253 AGIETNLRAENLS 265 AG R + L+ Sbjct: 247 AGFSLQQRPQELA 259 >gi|237785136|ref|YP_002905841.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM 44385] gi|237758048|gb|ACR17298.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM 44385] Length = 309 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 133/271 (49%), Gaps = 18/271 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++P K GQNF++D N +++I ++ V+E+G G G+LT LL + KV +E Sbjct: 35 VVPTKKRGQNFVVDPNTVRRIVATADLSPDDHVLEVGPGLGSLTLGLLDV-VSKVTAVEI 93 Query: 79 D----QQFFPILKDISSQHPNRLEIIQDDALKV--DFEKFFNISSPIRIIANLPYNIGTR 132 D +Q + + ++ L++I DAL + K + P +ANLPYN+ Sbjct: 94 DTTLAEQLPHTVAEYAATRAENLDVICADALALTGSVAKDLGTNPPTAFVANLPYNVAVP 153 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + + + +P L ++ Q EV +R+ A+ + YG SV + + + I Sbjct: 154 ILLHVL--EIFPTITRVL-VMVQAEVADRLAAEPGNRVYGVPSVKARFYGQVQRVGAIGK 210 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLK-----RL 244 +VF+P+P V S ++ P P L I AF +RRKTLR +LK Sbjct: 211 NVFWPAPNVDSGLVKLTRGTRPWPTDSAARSQLWPIIDAAFAQRRKTLRAALKGHYGNAA 270 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNI 275 EN L +AGI+ R E LSI++F + + Sbjct: 271 AAENALREAGIDPQRRGETLSIDEFISLAQL 301 >gi|11499372|ref|NP_070611.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM 4304] gi|27151555|sp|O28491|RSMA_ARCFU RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|2648762|gb|AAB89464.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM 4304] Length = 244 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 120/258 (46%), Gaps = 26/258 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K +GQ+ L+D ++ +I + + V+E+G G GNLT LL + V+ IEKD Sbjct: 4 RKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRKCS--VVGIEKDPL 61 Query: 82 FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L++ S R +IQ DALKVDF F + +AN+PY I + L F + Sbjct: 62 MVKRLRERFSDFIGKGRFRLIQGDALKVDFPYF------TKFVANIPYKISSPLTFKLLK 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + +++Q+E ER+ + N RL V++ KA ++ + P F P P Sbjct: 116 TD-----FRLAVVMYQREFAERLCGEDN-----RLGVISKTYCKAEILEIVKPSSFNPPP 165 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL----RQSLKRLGGENLLHQAGI 255 KV S ++ +P E +K AF RRK + ++ KR G E +++ Sbjct: 166 KVESAIVRIVPEPEVFVENRELFEKFVTFAFSMRRKRMGKIVQEFRKRYGVELAVNKNLA 225 Query: 256 ETNLRAENLSIEDFCRIT 273 E R E L F I Sbjct: 226 EK--RPEELGARKFAEIV 241 >gi|302821163|ref|XP_002992246.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii] gi|300140013|gb|EFJ06743.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii] Length = 312 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 14/218 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I++ I + +G V+EIG G GNLT LL + A+KVI +E D + Sbjct: 26 KSRGQHILKNPLIVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVELDPRM 84 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ P N L+IIQ D LK + +F++ +AN+PY I + L F +S Sbjct: 85 VLELQRRVQGTPQANHLQIIQGDVLKTELP-YFDVC-----VANIPYQISSPLTFKLLSH 138 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + + ++FQKE R+ A+ P Y RLSV T + + + + F P PK Sbjct: 139 R---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNFRPPPK 195 Query: 201 VTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237 V S+V+ P NP+ P + + + F ++ KTL Sbjct: 196 VDSSVVRIEPR-NPLPPVSFKEWDGLVRLCFNRKNKTL 232 >gi|157163959|ref|YP_001467822.1| dimethyladenosine transferase [Campylobacter concisus 13826] gi|171855081|sp|A7ZGB4|RSMA_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|112801728|gb|EAT99072.1| dimethyladenosine transferase [Campylobacter concisus 13826] Length = 280 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 23/278 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK+ GQNFL D L KI ++ D V+EIG G G+LT LL + K E Sbjct: 2 IKAKKHFGQNFLQDKATLDKIIQAIPK-DVENVVEIGPGLGDLTFRLLQI--YKTTSFEI 58 Query: 79 DQQFFPILK-DISSQHPN-RLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLF 135 D++ F ILK +++ N +L++ DAL+ +++ +SS ++ANLPY + T+++ Sbjct: 59 DRELFQILKVKFANEIQNGQLKLFCKDALE-QWQQEGGLSSENYFLVANLPYYVATKMIL 117 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 N I + L ++ QKEV + +A+ + LS+L + + ++FD+ +F Sbjct: 118 NAIDDEKCL----GLIVMIQKEVALKFSAKSKDKEFSALSILASLQGRCELLFDVDAKLF 173 Query: 196 FPSPKVTSTVIHF-----IPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLK----R 243 P PKVTS+VI I + I E+ K + AF RKTL ++L + Sbjct: 174 NPPPKVTSSVIKLQKTKKIFGKDGIFKDAKQYEAFKAFLRAAFASPRKTLLKNLSTNFDK 233 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 E + + TNLR L ++ + +I I ++ + Sbjct: 234 KALEEIFENMNLATNLRPHELDVDSYLKIFEITKEDNE 271 >gi|167750299|ref|ZP_02422426.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702] gi|167656659|gb|EDS00789.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702] Length = 287 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 20/269 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL++ + KIAE G+ + IEIG G G LT+ L KV IE D Sbjct: 22 KSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGVLTRELAK-RCEKVAAIEIDTGL 80 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNWIS 139 PIL + ++ N +E+I D ++ D K P + + ANLPY I + ++ + Sbjct: 81 KPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDMDVIVCANLPYYITSPVIMKLLE 139 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P +++T++ Q E +RI A S G ++ + K +F ++ F P+P Sbjct: 140 -EKLP--IKAITVMVQLEAADRICAAVGSRECGAITASINYYAKPKKLFRVNRGSFMPAP 196 Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-------KRLGGENL 249 V S VI + P P +++ ++ ++AF +RRK L + K + E Sbjct: 197 NVDSAVISLERYEQP-PYKVDNEPLFFEVIKQAFAQRRKQLANPVSAYFKIPKAVLAEK- 254 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278 + + GI RAE L++ + ++ I+ + Sbjct: 255 MTEGGIPATARAEQLTMAELVKLYEIIDE 283 >gi|118475585|ref|YP_892919.1| dimethyladenosine transferase [Campylobacter fetus subsp. fetus 82-40] gi|171473008|sp|A0RRT6|RSMA_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118414811|gb|ABK83231.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Campylobacter fetus subsp. fetus 82-40] Length = 268 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 25/251 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D NI +I ++ + D ++EIG G G+LTQ L+ L + + E D + Sbjct: 5 KKKFGQNFLQDENIKNQIIQAIPN-DVKRIVEIGPGLGDLTQKLVKLDSM-IDCFEIDSE 62 Query: 82 FFPILKDI--SSQHPNRLEIIQDDAL----KVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + IL D S +L II DAL K+ ++F ++ANLPY + T ++ Sbjct: 63 LYTILLDKFRSELDSGKLNIINSDALNAWDKLSASEYF-------LVANLPYYVATNMIL 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I + L ++ Q+EV + +++ + L++LT + K ++FD+ F Sbjct: 116 KAIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWLKGKCELLFDVPSSAF 171 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S+VI I + + ++ K + AF RKTL ++L NL+ + Sbjct: 172 NPPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLKNL-----SNLVQRDR 226 Query: 255 IETNLRAENLS 265 +E ENLS Sbjct: 227 LEIFFNTENLS 237 >gi|269792402|ref|YP_003317306.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100037|gb|ACZ19024.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 267 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 14/253 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQNFL++ I ++I +++ V+EIG G G LT+ +L + ++ +E D++ Sbjct: 12 IGQNFLINRGIAERIVDAAQISPQDIVLEIGPGKGVLTRQILATPCKALVAVELDRRLEE 71 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L I+ Q P RL +I DAL++D + P +++ANLPY+I T +++ + + P Sbjct: 72 FLSPIAQQDP-RLSLIWGDALRLDLSRDIPF-HPTKVVANLPYHITTPIVWKLLE-ELAP 128 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSV---LTGWRTKATMMFDISPHVFFPSPKV 201 + L+ Q+E R+ L V GW +KA + P F P PKV Sbjct: 129 LGLVRMVLMVQREAAMRMLQGAKGKDRSPLGVTLEAMGWVSKA---ISVPPGAFRPIPKV 185 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIE 256 S+VI N +++ + +F +RRK L + + G GE + G+ Sbjct: 186 NSSVIRIDIDKNRELPTDPRWRRMLKASFSQRRKNLLNNWQAAGIPREEGERRIEALGLM 245 Query: 257 TNLRAENLSIEDF 269 N RAE L+++ + Sbjct: 246 ANARAEELTLDQW 258 >gi|269957508|ref|YP_003327297.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM 15894] gi|269306189|gb|ACZ31739.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM 15894] Length = 303 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 17/274 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D ++KI ++G G V+E+G G G+LT LL G Sbjct: 14 IRELAGRLGVRPTKTLGQNFVHDAGTVRKIVRAAGLRPGQRVVEVGPGLGSLTLGLLEAG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQH-PNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A V+ +E D + +H P E++ DAL V + P ++ANLPY Sbjct: 74 A-SVVAVEIDPVLAGEIPATVQRHLPGADFEVVLSDALDV---RTLPGEPPTALVANLPY 129 Query: 128 NIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 N+ +L + D+ ES+ ++ Q EV +RI A S YG SV W +A Sbjct: 130 NVAVPVLLTMLERFDS----LESVLVMVQAEVADRIAAAPGSKIYGIPSVKAAWYARAWR 185 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLG 245 +S +VF+P P V S ++ P E + + AF +RRKTLR +L L Sbjct: 186 SLTVSRNVFWPVPNVDSALVALERRDPPTTAATREQVFTVVDAAFAQRRKTLRAALSGLF 245 Query: 246 GEN-----LLHQAGIETNLRAENLSIEDFCRITN 274 G L A ++ R E L + F RI Sbjct: 246 GSGPAAEAALRAADVDPGARGETLDVTAFARIAE 279 >gi|70953687|ref|XP_745929.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi] gi|56526401|emb|CAH78914.1| dimethyladenosine transferase, putative [Plasmodium chabaudi chabaudi] Length = 379 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 11/231 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D + Sbjct: 75 KKHGQHLLKNPGILDKIIIAAKIKSSDVVLEIGCGTGNLTIKLLPL-AKKVITIDIDARM 133 Query: 83 FP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + K + + LE+ + DA+K F +F ++ + AN+PY I + L+F I+ Sbjct: 134 ISEVKKRCLYEGYSNLEVYEGDAIKTIFPRF-DVCT-----ANIPYKISSPLIFKLIA-- 185 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+FQKE ER+ A +Y RL+V + + ++ F P PKV Sbjct: 186 -HRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 244 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S V+ IP N + + + F ++RKTL KR N+L Sbjct: 245 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295 >gi|325067303|ref|ZP_08125976.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Actinomyces oris K20] Length = 188 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 10/181 (5%) Query: 73 VIVIEKD---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLP 126 +I +E D + PI + D RL +IQ DAL + + P R++ANLP Sbjct: 1 MIAVEIDPALARALPITVADRMPPAAGRLTLIQADALSITGPDSLGDAGHPPTRLVANLP 60 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YN+ +L + A P ES+T++ Q EV +R+ A+ S YG SV W A Sbjct: 61 YNVAVPVLLTALEAL---PSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAWYAAARR 117 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 IS HVF+P P V S ++ + P E + + AF +RRKTLR++L RL Sbjct: 118 TLTISRHVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALARLA 177 Query: 246 G 246 G Sbjct: 178 G 178 >gi|302800922|ref|XP_002982218.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii] gi|300150234|gb|EFJ16886.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii] Length = 312 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 14/218 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +++ I + +G V+EIG G GNLT LL + A+KVI +E D + Sbjct: 26 KSRGQHILKNPLVVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVELDPRM 84 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ P N L+IIQ D LK + +F++ +AN+PY I + L F +S Sbjct: 85 VLELQRRVQGTPQANHLQIIQGDVLKTELP-YFDVC-----VANIPYQISSPLTFKLLSH 138 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + + ++FQKE R+ A+ P Y RLSV T + + + + F P PK Sbjct: 139 R---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNFRPPPK 195 Query: 201 VTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237 V S+V+ P NP+ P + + + F ++ KTL Sbjct: 196 VDSSVVRIEPR-NPLPPVSFKEWDGLVRLCFNRKNKTL 232 >gi|291276278|ref|YP_003516050.1| putative dimethyladenosine transferase [Helicobacter mustelae 12198] gi|290963472|emb|CBG39302.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Helicobacter mustelae 12198] Length = 260 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 12/256 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D + + KI +S ++ ++EIGAG G+L+ LL L K I+ D Sbjct: 6 KKKFGQNFLKDKDCIHKIIQSIPNIHTDEQIVEIGAGLGDLSDELLKLYPIKAYEIDSDL 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 K S+ RL++I D L + K + P +++NLPY + T ++ + Sbjct: 66 CSLLRKKYHSALDSARLKLIHQDVLDLPNSKGWLHQEPYVLVSNLPYYVATHIILKILK- 124 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + ++ QKEV +R A+ H+ LS+LT + + +FD+ F P P+ Sbjct: 125 ---DPLCQGFVVMTQKEVAQRFCAKSGESHFCALSILTQTFGQVSYLFDVPAIAFEPVPR 181 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---- 256 VTS V F ++ I E++ KI AF RK L ++L + +L + +E Sbjct: 182 VTSAVFSFKKNIAMIDEDFENMLKI---AFCAPRKKLLKNLATHYDKTVLQKVFMELRIP 238 Query: 257 TNLRAENLSIEDFCRI 272 ++RA L ++ +I Sbjct: 239 LDVRAHQLENSNYHQI 254 >gi|313678187|ref|YP_004055927.1| dimethyladenosine transferase [Mycoplasma bovis PG45] gi|312950337|gb|ADR24932.1| dimethyladenosine transferase [Mycoplasma bovis PG45] Length = 262 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 124/262 (47%), Gaps = 14/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL + +++KKI + +G ++EIG G G LT+ L+ K + E D Sbjct: 11 KKKFGQNFLNNADVVKKIIDIINP-EGKKILEIGPGTGALTKFLVD-KCSKYVAFEIDTD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + + + E+I D L+ D ++ + ++ N+PY I + ++ I Sbjct: 69 MIAFLNENNYFNLGSTELIHKDFLEADLNQY----ACFEVVGNIPYYITSDIILKIIDNR 124 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ TLL QKEV +RI A NSP Y +LS+ + K + + F P PKV Sbjct: 125 F---LFKRATLLVQKEVADRIIATPNSPDYSKLSITCQYVAKVKKELFVGRNNFTPVPKV 181 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIET 257 S ++ F + N +LK + F RRK L SLK+ + + A I+ Sbjct: 182 DSAIVTFDFYQNK-DDNYSNLKPFFKLCFSARRKKLMWSLKQTYNQEKVQNAYKTLNIDE 240 Query: 258 NLRAENLSIEDFCRITNILTDN 279 N+R + L+++ ++ L N Sbjct: 241 NIRIQQLNLDTIIKLYEQLESN 262 >gi|307172086|gb|EFN63666.1| Probable dimethyladenosine transferase [Camponotus floridanus] Length = 263 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 12/232 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I++ + E + V+EIG G GN+T +L A+KVI E D + Sbjct: 22 KSKGQHILKNPLIIQSMVEKAALKPTDVVLEIGPGTGNMTVKMLE-KAKKVIACEIDPRM 80 Query: 83 FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + + ++L+I+ D LK D FF++ +AN+PY I + L+F +S Sbjct: 81 VAELQKRVQGTVYQSKLQIMVGDVLKSDLP-FFDLC-----VANIPYQISSPLIFKLLSH 134 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L+FQ+E ER+ A+ Y RLS+ T + M+ + + F P PK Sbjct: 135 R---PIFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPK 191 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 V S V+ P P P + +T+ AF ++ KTL + K+ LL + Sbjct: 192 VESNVVRIEPRNPPPPINYQEWDGLTRIAFIRKNKTLSATFKQTTVITLLEK 243 >gi|268608155|ref|ZP_06141882.1| dimethyladenosine transferase [Ruminococcus flavefaciens FD-1] Length = 285 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 134/274 (48%), Gaps = 22/274 (8%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++++ IL + K +GQNF+++ +I KIAE + G V+EIG G G LT L Sbjct: 7 NTVRDILERHGFSFSKGLGQNFIINPDICPKIAEMGNAQAGYGVLEIGTGIGVLTAELAK 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-----II 122 A KV +E D + PIL++ S N ++I +D +K D +K I+ + + Sbjct: 67 R-ADKVCAVEIDTRLLPILEETLSDFDN-IKIFNEDIMKCDLQKL--IAEEFQGLHTAVC 122 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I + ++ + + P +S+T++ QKE +R+ A+ + G ++V + Sbjct: 123 ANLPYYITSPVIMLLLES-KLP--IDSITVMVQKEAAQRLCAKVGTRDSGAITVGVNYYG 179 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239 +F++S F P+P V S VI H + E K K+ + F +RRKT Sbjct: 180 TVKSLFNVSRGSFMPAPNVDSAVIRIDLH-SEHRLSEEDEKFFFKVVKSGFSQRRKTAAN 238 Query: 240 SLKRLGG------ENLLHQAGIETNLRAENLSIE 267 ++ L G + L G+ R E+L ++ Sbjct: 239 AVSSLMGIPKEKVYSALKAVGLPETARIESLDMD 272 >gi|242015107|ref|XP_002428215.1| dimethyladenosine transferase, putative [Pediculus humanus corporis] gi|212512776|gb|EEB15477.1| dimethyladenosine transferase, putative [Pediculus humanus corporis] Length = 306 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 12/224 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+ L + +++ + E + V+EIG G GN+T LL A+KVI E D + Sbjct: 24 KKSAGQHILKNPLVIQNMVEKAALKSTDIVLEIGPGTGNMTVKLLD-KAKKVIACEVDVR 82 Query: 82 FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ P ++LEII D LK + FFN +AN+PY I + L+F + Sbjct: 83 MVAELQKRVQCTPYQSKLEIIVGDVLKSELP-FFNAC-----VANIPYQISSPLVFKLL- 135 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 PF+ L+FQKE R+ A+ Y RLS+ T + ++ ++ + F P P Sbjct: 136 --LHRPFFRCAILMFQKEFAHRLVAKPGDKLYCRLSINTQLLARVDIVMKVAKNNFRPPP 193 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 KV S+V+ P P P + +T+ AF ++ KTL + ++ Sbjct: 194 KVESSVVRIEPRNPPPPIQFKEWDGLTRIAFLRKNKTLGAAFRQ 237 >gi|296123743|ref|YP_003631521.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776] gi|296016083|gb|ADG69322.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776] Length = 314 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 131/294 (44%), Gaps = 38/294 (12%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L + +I P+ +GQNFL+D+N+++ +A + V+E+G G G LT + L Sbjct: 12 LTELFHKLRINPRGDLGQNFLIDINLVELVAREAQLSKDDVVLEVGTGTGGLT-IFLAAE 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK------------VDFEKFFNI 115 A +V+ IE D I + QH + ++ + DALK V+ Sbjct: 71 AGEVVSIEYDPNMHAI---ATKQHAGLSNVQWVNTDALKNKNQLHPLLVESVNTALARRP 127 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 S ++++ANLPYNI T ++ + I WP W + + Q E+ R+ A S Y LS Sbjct: 128 GSTLKLVANLPYNIATPVI-SMIVGSEWP--WSRMVVTVQWEMAVRMQATPGSSDYSGLS 184 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------KITQEA 229 + + ++ + P VF+P PK+ S V+ + P P + + + Sbjct: 185 IWLQSQCDIEILRKLPPDVFWPRPKIDSAVV----LVTPAPARRDRIADPEFFHNYLRAI 240 Query: 230 FGKRRKTLRQSLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 F RRK LR L + LL QAGI RAE L E + N+L Sbjct: 241 FMHRRKLLRGVLCSTYSQVAKPRIDELLQQAGITPQARAEELPTEIHVALANLL 294 >gi|305432594|ref|ZP_07401755.1| dimethyladenosine transferase [Campylobacter coli JV20] gi|304444305|gb|EFM36957.1| dimethyladenosine transferase [Campylobacter coli JV20] Length = 264 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 22/259 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK+ GQNFL D +IL KI ++ D ++EIG G G+LTQ LL + K I+ D Sbjct: 5 KKHYGQNFLNDKSILSKIIQAIPK-DTENIVEIGPGLGDLTQELLKVSHVKAYEIDDD-- 61 Query: 82 FFPILKDISSQHPN--RLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLFN 136 PIL+ + + +L ++ DA K+ D +K+F ++ANLPY + + L+ Sbjct: 62 LIPILRKKFQKELDCGKLNLLHQDASKLACFDEKKYF-------LVANLPYYVASHLILQ 114 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ + A + L VL+ + ++FD+ P F Sbjct: 115 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253 P PKV S V+ I C + + K ++ F RK L +LK + L + Sbjct: 171 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 230 Query: 254 GIETNLRAENLSIEDFCRI 272 + NLR L ++ + +I Sbjct: 231 KLNLNLRPHELCVDSYLKI 249 >gi|261415778|ref|YP_003249461.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372234|gb|ACX74979.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326044|gb|ADL25245.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 261 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 118/255 (46%), Gaps = 17/255 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D+ IA + G V+EIG G G LT+ LL G ++ +E D+Q Sbjct: 6 RRKFGQNFL-DVETATAIAGDLPAEAGEFVLEIGPGHGALTEHLLNRGL-ELTAVEIDEQ 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L + + N I+ D LK D + F + + + NLPYN+ T ++ A Sbjct: 64 CVEVLNEKFKDYKN-FNIVNIDFLKFDLQAFLDAHAKPWVTGNLPYNVSTAII-----AG 117 Query: 142 TWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + Q EV ERI A+ S +YG LSVL ++ I P F P P Sbjct: 118 LMPRLHLTKGFMGMVQLEVAERICAEPCSSNYGSLSVLVSAFANTQILRKIGPEHFTPKP 177 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE--- 256 V S + P + I + + AF ++RKTL S R + + QA IE Sbjct: 178 NVDSATMLLTPREDAIQAP-DGFFDFVRTAFTQKRKTLANSFGRNYDKKKI-QATIELLD 235 Query: 257 --TNLRAENLSIEDF 269 T +RAE LS E F Sbjct: 236 WPTTIRAEELSPEQF 250 >gi|164655863|ref|XP_001729060.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966] gi|159102949|gb|EDP41846.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966] Length = 330 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 14/228 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + + + I + + TV+E+G G GNLT +L A++V+V+E D + Sbjct: 53 GQHILKNPLVAQGIVDKANLKPTDTVLEVGPGTGNLTVRILE-KAKRVVVVEMDPRMAAE 111 Query: 86 LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L P +LEI+ D K D +F++ +I+N PY I + L+F +S Sbjct: 112 LTKRVQGKPEQRKLEIVIGDVCKTDLP-YFDV-----VISNTPYQISSPLVFKLLSHR-- 163 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ+E R+ A+ SP +GRLS K + ++ F P P+V S Sbjct: 164 -PLFRCAILMFQREFAMRLVARPGSPLWGRLSANVQLYAKVDHIMKVARGSFRPPPQVDS 222 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 +V+ +P P P E +T+ F +R K LR G +L Sbjct: 223 SVVRIVPLNPPPPIKFEEFDGLTRIVFSRRNKVLRACF--FGARGVLE 268 >gi|72160809|ref|YP_288466.1| dimethyladenosine transferase [Thermobifida fusca YX] gi|119365858|sp|Q47SX4|RSMA_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71914541|gb|AAZ54443.1| dimethyladenosine transferase [Thermobifida fusca YX] Length = 287 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 121/277 (43%), Gaps = 21/277 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + I P K +GQNF++D +++I ++ V+E+G G G+LT LL Sbjct: 17 VRRLAAQLGIRPTKTLGQNFVIDPGTVRRIVRAAQVSPDDVVVEVGPGLGSLTLALLP-H 75 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 R V +E D + L + H +RL ++ DAL++ P ++ANL Sbjct: 76 VRHVTAVEIDPRLAEALPGTVADHAPAYAHRLRVVTADALRI---TELPDPQPTALVANL 132 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ ++ + ++ E ++ Q EV ER+ A+ YG S W Sbjct: 133 PYNVAVPVVLHLLNLLP---SLEHGLVMVQAEVAERLAARPGDRAYGAPSAKIAWYADVR 189 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLR---- 238 I VF+P P V S ++ P P E + + AF +RRKTLR Sbjct: 190 RAGAIGRTVFWPVPNVDSGLVAL--RRRPAPPTKASREDVFAVVDAAFAQRRKTLRAALS 247 Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG++ R E L I DF RI Sbjct: 248 SWAGSAAAAEAALRSAGVDPRSRGETLGIADFARIAE 284 >gi|257461216|ref|ZP_05626314.1| dimethyladenosine transferase [Campylobacter gracilis RM3268] gi|257441590|gb|EEV16735.1| dimethyladenosine transferase [Campylobacter gracilis RM3268] Length = 287 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 11/201 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I KK GQNFL D +L KI ++ GS+ V+EIGAG G+LT+ LL ++ E Sbjct: 2 IRAKKEFGQNFLKDEAVLSKIIQAIPGSVQ--NVVEIGAGLGDLTRKLLEF--YRLKSFE 57 Query: 78 KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D+ + IL +Q LE++ DAL++ E+ ++ANLPY + T+++ Sbjct: 58 IDEDLYQILSAKFAQQIASGELELVLGDALRIWQERRGLERGEYFLVANLPYYVATKMIL 117 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I + F ++ QKEV + A+ + LS+L ++FD+ P F Sbjct: 118 QAIDDELCGGFL----VMIQKEVALKFCARAGQSDFSALSILADLAGGCELLFDVEPDCF 173 Query: 196 FPSPKVTSTVIHFIPHLNPIP 216 P+PKVTS+VI I N P Sbjct: 174 EPAPKVTSSVIRLIKGKNFKP 194 >gi|150399067|ref|YP_001322834.1| dimethyladenosine transferase [Methanococcus vannielii SB] gi|166221678|sp|A6UP00|RSMA_METVS RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|150011770|gb|ABR54222.1| dimethyladenosine transferase [Methanococcus vannielii SB] Length = 267 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 13/185 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ FL D N +KK +S+ + V+E+G G G LT+ L L A+ V VIE D + Sbjct: 5 KKLGQCFLKDKNFVKKAIKSADITENDIVLEVGLGEGALTKELAKL-AKFVYVIELDMRL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141 P I S+ N +++I +DALKVD ++ FN +I+ANLPY I + + F ++ D Sbjct: 64 EPFANQIMSEFKN-VKVIWNDALKVDLKELGFN-----KIVANLPYQISSPITFKFLEND 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L++Q E +R+ + ++ Y RLSV + + + + P F P P V Sbjct: 118 -----FDVAVLMYQYEFAKRMIGKPDTDEYSRLSVSIQYNSDVEFICKVPPTAFSPKPDV 172 Query: 202 TSTVI 206 S ++ Sbjct: 173 NSAIV 177 >gi|57504575|ref|ZP_00370687.1| dimethyladenosine transferase [Campylobacter coli RM2228] gi|57019470|gb|EAL56164.1| dimethyladenosine transferase [Campylobacter coli RM2228] Length = 263 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 22/259 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK+ GQNFL D +IL KI ++ D ++EIG G G+LTQ LL + K I+ D Sbjct: 4 KKHYGQNFLNDKSILSKIIQAIPK-DTENIVEIGPGLGDLTQELLKVSHVKAYEIDDD-- 60 Query: 82 FFPILKDISSQHPN--RLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLFN 136 PIL+ + + +L ++ DA K+ D +K+F ++ANLPY + + L+ Sbjct: 61 LIPILRKKFQKELDCGKLNLLHQDASKLACFDEKKYF-------LVANLPYYVASHLILQ 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ + A + L VL+ + ++FD+ P F Sbjct: 114 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 169 Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253 P PKV S V+ I C + + K ++ F RK L +LK + L + Sbjct: 170 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 229 Query: 254 GIETNLRAENLSIEDFCRI 272 + NLR L ++ + +I Sbjct: 230 KLNLNLRPHELCVDSYLKI 248 >gi|315585815|gb|ADU40196.1| dimethyladenosine transferase [Helicobacter pylori 35A] Length = 271 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFTLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L +P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|147794654|emb|CAN73506.1| hypothetical protein VITISV_007907 [Vitis vinifera] Length = 383 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 12/222 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I S TV+EIG G GNLT LL A++V+ + D + Sbjct: 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQ-AAQRVVAVXLDARM 108 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ ++H ++L +I DALK DF +F ++AN+PY I + L+ + Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF S TLL QKE R+ A + RL+V + + D+S F P PK Sbjct: 163 AN--PF-RSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S+V+ P L T+ F K+ KTL + K Sbjct: 220 VDSSVVTIRPKAEIPDVDLNEWCAFTRTCFSKKNKTLGATFK 261 >gi|322493412|emb|CBZ28699.1| ribosomal RNA adenine dimethylase family protein,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 374 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 13/231 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +KT S I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL Sbjct: 57 SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KVI E D + L P ++L+II+ + L+ DF F + +AN Sbjct: 117 QT-AKKVIAFEIDPRMMAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235 + + IS + F P PKV S+VI P P E + + F ++ K Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPPPDVDFEEWDGLVKMLFSRKNK 276 >gi|284989485|ref|YP_003408039.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160] gi|284062730|gb|ADB73668.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160] Length = 288 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 127/275 (46%), Gaps = 19/275 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ + ++ P K +GQNFL D N +++I ++ V+E+G G + L Sbjct: 17 AIRDLAQQLELRPTKALGQNFLHDANTIRRIVRTAELTREDVVLEVGPG-LGSLTLGLLP 75 Query: 69 GARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A V +E D + +L + ++ + P +RL +++ DAL++ + +P ++AN Sbjct: 76 AAAHVTAVEIDPRLAALLPRTVAERAPALADRLTVVEADALRI---REVPGRAPTALVAN 132 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + +L Q EV ER+ A SP YG S W + Sbjct: 133 LPYNVAVPVLLHLLELLP---TLRRALVLVQAEVAERLAAAPGSPAYGVPSAKAAWYGEV 189 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 ++ VF+P P V S ++ P P + + AF RRK LR +L R Sbjct: 190 RRAGNVGRRVFWPEPNVDSGLVAL--DRRPPPAGDRAATFTVIDAAFATRRKGLRAALAR 247 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E L AGI+ R E LS+ DF R+ Sbjct: 248 WAGGPAAAEARLRAAGIDPTTRGEQLSVADFARLA 282 >gi|240102961|ref|YP_002959270.1| dimethyladenosine transferase [Thermococcus gammatolerans EJ3] gi|259494259|sp|C5A594|RSMA_THEGJ RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|239910515|gb|ACS33406.1| Ribosomal RNA adenine methylase transferase (Dimethyladenosine transferase) (ksgA) [Thermococcus gammatolerans EJ3] Length = 278 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 16/232 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +I+ Y + P + +GQNFL+ +I+++ + + + TV+EIG G G LT L + A Sbjct: 7 SIIYKYNLRPNRTLGQNFLIVPDIIERNVKRAELSEKDTVLEIGPGLGVLTDEL-SKKAG 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV IE D + IL+ S PN +E+I+ DA+KV++ +F ++++NLPY I + Sbjct: 66 KVYAIEADSRMIEILQREYS-WPN-VELIKGDAVKVEWPEFN------KMVSNLPYQISS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F + + +E L++Q E ER+ A+ +Y RLS++ + ++ I Sbjct: 118 PVTFKLLKHE-----FERAVLIYQLEFAERMIAKPGDRNYSRLSLMVQAKANVELVERIG 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 F+P PKV S V+ P P +E + + + F RR T+ +LK+ Sbjct: 173 RGAFWPRPKVDSAVVVLEP--KPEKERIELNENLVKALFQHRRSTVASALKK 222 >gi|221062011|ref|XP_002262575.1| dimethyladenosine transferase [Plasmodium knowlesi strain H] gi|193811725|emb|CAQ42453.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain H] Length = 519 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G +IE+G G G +++ L +K+ +E D + +L S P + I DD L++ Sbjct: 270 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVL---SRTMPG-FDFIHDDVLQI 324 Query: 108 DFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 +++ + + + +I NLP+ I +++LF + + + E + Q EVG+RI ++ Sbjct: 325 NYKDLSKSKGTKLTVIGNLPFYITSQILFCLLD---YHHYIEQAIVTIQYEVGQRIISKP 381 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 N +Y LS+L T ++F I F+P PKV + V+ I + + C L LK+I Sbjct: 382 NEKNYSILSILFNLYTNPYLLFKIPSSAFYPVPKVEAAVMKIIFKHSNLNCNLLFLKEIL 441 Query: 227 QEAFGKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +F +RRK L+ SLKRL E L +LR + L+ F +TN L Sbjct: 442 RHSFQQRRKKLKSSLKRLLAKYSTEGNLQLPSSFCDLRPQQLTPLQFVELTNFL 495 >gi|154149286|ref|YP_001407258.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381] gi|171769706|sp|A7I417|RSMA_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|153805295|gb|ABS52302.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381] Length = 269 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 16/262 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 I KK GQNFL D N L KI ES + ++EIGAG G+LT LL K I+KD Sbjct: 3 IAKKKFGQNFLKDKNALNKIIESIPE-NAENIVEIGAGLGDLTYELLRKFKVKSYEIDKD 61 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 F K + E++ DALK F K + ++ANLPY + T ++ I Sbjct: 62 LIEFLKSKFACELENRKFELVFGDALK--FWKNGLCNKNYFLVANLPYYVATNMILKAID 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + F + QKEV E+ A+ +G +SVL K +F + F P+P Sbjct: 120 DELCDGF----VAMVQKEVAEKFCAESGDSEFGGISVLADIFGKCEFLFSVPADSFEPAP 175 Query: 200 KVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251 KV S VI I + E+ K + F RKT+ ++L + +L Sbjct: 176 KVVSAVIRLKKTRKIDDIFENSVQYENFKNFLKICFSSPRKTIMKNLSTKFDKEILQSIF 235 Query: 252 -QAGIETNLRAENLSIEDFCRI 272 + + TNLRA L+ F +I Sbjct: 236 EKLDLTTNLRAHELNFTLFFKI 257 >gi|313215231|emb|CBY42886.1| unnamed protein product [Oikopleura dioica] Length = 289 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 12/193 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + +++ + E +G L T++EIG G GN+T LL +KVI +E D++ Sbjct: 27 GQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVAE 85 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++ P ++L II DALK + FF++ ++ANLPY I + + F + Sbjct: 86 VQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---LH 136 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ AQ Y RLSV + + + + F P PKV S Sbjct: 137 RPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVES 196 Query: 204 TVIHFIPHLNPIP 216 TV+ P P+P Sbjct: 197 TVVRIEPRRPPLP 209 >gi|196010894|ref|XP_002115311.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens] gi|190582082|gb|EDV22156.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens] Length = 280 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 14/231 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 MGQ+ L + I+ I E + TV+EIG G GNLT LL A+KVI E D + Sbjct: 1 MGQHILKNPLIVNSIVEKAAIRSTDTVLEIGPGTGNLTVKLLQ-KAKKVIACEVDPRLAA 59 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L II D LK + +F++ +ANLPY I + +F + Sbjct: 60 ELQKRVQGSPVSTKLHIIVGDVLKTELP-YFDVC-----VANLPYQISSPFVFKLL---L 110 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P + L+FQ+E R+ A+ Y RLS+ T K + + + F P PKV Sbjct: 111 HRPLFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLAKVDHLIKVGKNNFRPPPKVE 170 Query: 203 STVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ P +NP+ P + +T+ F ++ +TL S K G + +L + Sbjct: 171 SSVVRIEP-INPVPPINFKEWDGLTRIVFARKNRTLSASFKTQGVQTMLEK 220 >gi|168011526|ref|XP_001758454.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690489|gb|EDQ76856.1| predicted protein [Physcomitrella patens subsp. patens] Length = 318 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 24/281 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQ+++L+ + + E++ G V+EIG G G+LT L+ GA +I +EKD Sbjct: 43 PKKWLGQHYMLNDQVNIDMVEAAKIQPGDLVLEIGPGTGSLTNALVEAGA-DIIAVEKDP 101 Query: 81 QFFPILKDISSQHPNRLEIIQDDALK--------VDFEKFFNISSP---IRIIANLPYNI 129 ++ + H ++EII +D +K K F S P ++IANLP+NI Sbjct: 102 DMAALITE-RFGHCGQVEIINEDFVKWPAALYMQQALRKRFGESEPPPRAKVIANLPFNI 160 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMF 188 T+++ + + + LL Q E R + A ++ Y +S+L + + F Sbjct: 161 TTQVVKQLLPLGCT---FSHIILLLQDEAAIRLVDASPDAEEYRPISILINFFSVPEYKF 217 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244 + F P PKV + V+ F P ++S + AF +RK LR+SL+ L Sbjct: 218 RVERDNFLPPPKVDAGVVSFALKQESEYPQVSSIKSFFTMVNSAFNGKRKMLRKSLQHLH 277 Query: 245 ---GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 ++ L G+ R E L+++ F + N L D + I Sbjct: 278 SPEATKSALTSIGLLETARPEELTLDQFVALHNTLNDPETI 318 >gi|156542231|ref|XP_001600750.1| PREDICTED: similar to ENSANGP00000016944 [Nasonia vitripennis] Length = 306 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 12/227 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + I++ + E + V+E+G G GN+T +L ++KVI E Sbjct: 21 IVFNKDFGQHILKNPLIIQSMVEKAALRPTDVVLEVGPGTGNMTVKMLE-RSKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P ++L+I+ D LK+D FF++ +AN+PY I + L+F Sbjct: 80 DTRMVAELQKRVMGTPIQSKLQIMVGDVLKMDLP-FFDLC-----VANVPYQISSPLVFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E ER+ A+ Y RLSV T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKDYCRLSVNTQLLARVDMLMKVGKNNFR 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 P PKV S V+ P P P + +T+ AF ++ KTL + K+ Sbjct: 191 PPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQ 237 >gi|156539746|ref|XP_001600767.1| PREDICTED: similar to dimethyladenosine transferase [Nasonia vitripennis] Length = 262 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 17/199 (8%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ Y++ K + QNFL++ + KI +S G + V+E+G GPG +T+ +L Sbjct: 11 TIRDIIKLYRLSAIKQLSQNFLMNEALTDKIVKSVGKIYNSQVLEVGPGPGGITRSILKK 70 Query: 69 GARKVIVIEKDQQFFPIL---KDISSQHPNRLEIIQDDALKVDFEKFF--------NISS 117 +K+IV+EKDQ+F PIL + I S + +I +D + ++ + F N Sbjct: 71 NPKKLIVVEKDQRFRPILDLMESIVSASDVDMTLIYNDIMSINTKDVFSFKDKKEWNDEC 130 Query: 118 P-IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 P I I+ NLP++I T L+ W+ A + W +TL FQKEV ER+ A Sbjct: 131 PNIFIVGNLPFSISTALIIKWLHAISKQKEAWSHGRVRMTLTFQKEVAERLVADVMGNQR 190 Query: 172 GRLSVLTGWRTKATMMFDI 190 RLSV+ T + F I Sbjct: 191 CRLSVMAQTWTLPKLQFII 209 >gi|227504167|ref|ZP_03934216.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940] gi|227199211|gb|EEI79259.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940] Length = 284 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 22/281 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNFL D N +++I ++ V+E+G G G+LT LL Sbjct: 11 EIRQLAEKLDVTPTKKLGQNFLHDPNTIRRIVAAADLQRDDRVVEVGPGLGSLTLGLLE- 69 Query: 69 GARKVIVIEKDQQFFPILKD-ISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIAN 124 + V+E D + L D I+ + P + L +I+ DAL++ + P ++AN Sbjct: 70 AVDDLTVVEIDPRLAAQLPDTIAERAPEQAGNLRLIEKDALRI---APGELGEPTALVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + + +P L ++ Q EV ER+ A+ + YG SV + Sbjct: 127 LPYNVAVPVLLHLL--ELYPTIRRVLVMV-QLEVAERLAAKPGNKVYGVPSVKASFYGTV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKTLRQ 239 I +VF+P+P + S ++ I P ++ + + AF +RRKTLR Sbjct: 184 RQAGTIGKNVFWPAPNIESGLVR-IDCFQDAPWPIDDATRKAVFPLVDAAFAQRRKTLRA 242 Query: 240 SLK-RLGG----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 +L GG E L AGI+ LR E L++EDF R+ I Sbjct: 243 ALSGHFGGGPAAEEALVAAGIDPRLRGEKLAVEDFVRLAGI 283 >gi|86608465|ref|YP_477227.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|119365854|sp|Q2JMR8|RSMA_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86557007|gb|ABD01964.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 282 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 25/274 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSG------SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 P+K GQ++L D + + I ++ D V+EIG G G LT+ LL G +V+ Sbjct: 4 PRKRFGQHWLKDPAVHEAILRAAQLNDLERGADPTWVLEIGPGTGQLTRRLLAQGV-QVV 62 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +E D+ +L+ + P R +++ D F + P ++AN+PYN+ +L Sbjct: 63 AVEIDRDLCRLLRKRFADQP-RFHLVEGD-----FLRLPLPPQPRLLVANIPYNLTGSIL 116 Query: 135 FNWISADTWPPF-WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P +E + LL QKE+ ER+ A S YG LS+ T + ++ + P Sbjct: 117 EKVLGSPAQPVRQFERIVLLVQKELAERLQAGPGSKAYGALSLRTQYLADCELICRVPPT 176 Query: 194 VFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 F P+PKV S VI P P PC L ++ F RRK L +L L + Sbjct: 177 AFKPAPKVESAVIRLTPRPAPTPVRDPCWFNHL---LRQGFSTRRKKLVNALGSLVEREV 233 Query: 250 ----LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L Q + + RAE L + + ++++L + Sbjct: 234 VAAALAQLRLNPDARAEELDLPHWLALSDLLLEK 267 >gi|116669774|ref|YP_830707.1| dimethyladenosine transferase [Arthrobacter sp. FB24] gi|166221643|sp|A0JU87|RSMA_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116609883|gb|ABK02607.1| dimethyladenosine transferase [Arthrobacter sp. FB24] Length = 295 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 18/284 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K +GQNF++D N +++I ++ TV+E+G G G+LT LL Sbjct: 19 ASDVRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAADIHADETVLEVGPGLGSLTLGLL 78 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A+ V+ +E D L Q ++ DA+KV P ++ Sbjct: 79 D-AAKSVVAVEIDPVLAAKLPGTVQQWRPGAAKDFHLVLADAMKVTELPV----EPTALV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + +P L ++ Q EV +R+ A S YG SV W + Sbjct: 134 ANLPYNVAVPVVLHLL--QHFPSLRHGLVMV-QDEVADRLAAGPGSKTYGVPSVKAAWYS 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+PK+ S ++ F P+ E + + AF +RRKTLR +L Sbjct: 191 SMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPVTSATREQVFAVIDAAFAQRRKTLRAAL 250 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G E L AG++ R E + I F RI D Q Sbjct: 251 AGWAGSAAEAEQCLLAAGVDPTARGEVIDIAAFARIAEARQDRQ 294 >gi|332021836|gb|EGI62176.1| Putative dimethyladenosine transferase [Acromyrmex echinatior] Length = 266 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 25/236 (10%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKV 107 V+EIG G GN+T +L A+KV+ E D + L+ + H ++L+I+ D LK Sbjct: 12 VVLEIGPGTGNMTVKMLE-KAKKVVACEIDPRMIAELQKRVQGTIHQSKLQIVYGDVLKS 70 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D FF++ +AN+PY I + L+F +S P + L+FQ+E ER+ A+ Sbjct: 71 DLP-FFDLC-----VANIPYQISSPLVFKLLSHR---PLFRCAVLMFQREFAERLVAKPG 121 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 Y RLS+ T + M+ + + F P PKV S V+ P P P + +T+ Sbjct: 122 DKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTR 181 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN-ILTDNQDI 282 AF ++ KTL + K Q + T L +N I C + N I++DN DI Sbjct: 182 IAFVRKNKTLSAAFK---------QTTVVTMLE-KNYKIH--CSLNNKIVSDNFDI 225 >gi|308183524|ref|YP_003927651.1| dimethyladenosine transferase [Helicobacter pylori PeCan4] gi|308065709|gb|ADO07601.1| dimethyladenosine transferase [Helicobacter pylori PeCan4] Length = 271 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMVQKEVALKFCAKDSQ---NALSVLVHAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|313228791|emb|CBY17942.1| unnamed protein product [Oikopleura dioica] Length = 318 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 12/193 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + +++ + E +G L T++EIG G GN+T LL +KVI +E D++ Sbjct: 38 GQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVAE 96 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++ P ++L II DALK + FF++ ++ANLPY I + + F + Sbjct: 97 VQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---LH 147 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ AQ Y RLSV + + + + F P PKV S Sbjct: 148 RPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVES 207 Query: 204 TVIHFIPHLNPIP 216 TV+ P P+P Sbjct: 208 TVVRIEPRRPPLP 220 >gi|147791996|emb|CAN77505.1| hypothetical protein VITISV_017803 [Vitis vinifera] Length = 350 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 14/226 (6%) Query: 16 HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 HY+ + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + V Sbjct: 20 HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I +E D + L+ P NRLE+IQ D L+ D +F+I +AN+PY I + Sbjct: 79 IAVEVDPRMVLELQRRFQGTPLSNRLEVIQGDVLRCDLP-YFDI-----CVANIPYQISS 132 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L F ++ P + ++FQ+E R+ AQ Y RLSV T + + + + Sbjct: 133 PLTFKLLA---HRPVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKVG 189 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + F P PKV S+V+ P P + + + F ++ KTL Sbjct: 190 KNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTL 235 >gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] Length = 349 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 24/276 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQN++L+ +I +++ +G +G V+EIG G G+LT L+ GA V+ +EKD+ Sbjct: 77 PKKSLGQNYMLNSDINEQLVGVAGVEEGDVVLEIGPGTGSLTNTLINSGAF-VLAVEKDK 135 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIR---IIANLPYNI 129 ++ + S +L+++ +D +K +I S R ++AN+P+ I Sbjct: 136 HMAALVSERFSS-TGKLKVLNEDIVKCHVRSHISSLVGSTEDIDSDTRKAKVVANIPFYI 194 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMF 188 T ++ + + + LL Q+E R + +P Y +++ + + F Sbjct: 195 STDVIKLLLPMGD---IFSEVVLLLQEETALRWVEPSLRTPEYRPINIFVNFYSDPEYKF 251 Query: 189 DISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 ++ FFP P V + V+ F P P +S + AF ++RK +R+SL+ + Sbjct: 252 KVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSNKSFFSMVNSAFNEKRKMIRKSLQHIC 311 Query: 246 G----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E L G+ + R E L+++DF ++ N +T Sbjct: 312 TSLEIEEALESIGLLSTSRPEELTLDDFVKLHNSIT 347 >gi|183984448|ref|YP_001852739.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M] gi|183177774|gb|ACC42884.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M] Length = 274 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 122/260 (46%), Gaps = 24/260 (9%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 ++K+ SG V+E+G G G+LT LL GA V +E D L ++H + Sbjct: 1 MRKVVTVSGITRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSD 59 Query: 96 ----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 RL ++ D L + + + P ++ANLPYN+ L + ++ P +T Sbjct: 60 SEIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAEF---PSIRVVT 114 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 ++ Q EV ER+ A+ YG SV G+ + +SP VF+P P+V S ++ + Sbjct: 115 VMVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY 174 Query: 212 -LNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRA 261 P P E+ ++ E AF +RRKT R + G N L A I+ R Sbjct: 175 ETTPWPTD-ENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRG 233 Query: 262 ENLSIEDFCRITNILTDNQD 281 E LSIEDF R +LT + D Sbjct: 234 ETLSIEDFVR---LLTRSAD 250 >gi|86605619|ref|YP_474382.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab] gi|119365853|sp|Q2JVW2|RSMA_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86554161|gb|ABC99119.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab] Length = 279 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 23/272 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 P+K GQ++L D + + I ++ D V+EIG G G LTQ LL G V+ + Sbjct: 4 PRKRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGV-HVVAV 62 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ +L+ + P R +++ D F + P ++AN+PYN+ +L Sbjct: 63 EIDRDLCRLLQKRFADQP-RFHLVEGD-----FLRLPLPPQPRLLVANIPYNLTGPILEK 116 Query: 137 WISADTWPPF-WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P +E + L+ QKE+ ER+ A S YG LSV + + ++ + P F Sbjct: 117 VLGSPAQPVRQFERIVLMVQKELAERLQAGPGSKAYGALSVRVRYLAECELICRVPPSAF 176 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-------E 247 P P+V S V+ P P P ++ + F RRK L + LGG Sbjct: 177 RPPPQVESAVVRLTPRPAPTPARDPRWFSQLVCQGFSARRKQL---VNALGGLVDRQTVA 233 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L Q + RAE L + D+ ++++L + Sbjct: 234 AALAQLRLSPTARAEELDLPDWLALSDLLLEQ 265 >gi|282896422|ref|ZP_06304443.1| 16S rRNA dimethylase [Raphidiopsis brookii D9] gi|281198710|gb|EFA73590.1| 16S rRNA dimethylase [Raphidiopsis brookii D9] Length = 281 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 19/270 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L I +++ ++EIG G G LT+ LL L ++ +E D+ Sbjct: 4 PQKQFAQHWLRSEKALNSIVKAAECQANDRILEIGPGTGILTKRLLPL-VDSLLAVEIDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136 +L N L ++Q D L + F +++AN+PYNI ++ Sbjct: 63 DLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPIIEK 121 Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + AD P ++S+ LL QKEV +R+ A+ S ++G LSV + + + + Sbjct: 122 LLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPASA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLK----RLGG 246 F+P PKV S V+ +P I P LE++ K+ FG +RK LR +L+ R Sbjct: 182 FYPPPKVDSVVVRLLPRNMEIGANDPKLLENMLKL---GFGCKRKMLRNNLQSVIDRESL 238 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL I ++RAE +S+ + + N L Sbjct: 239 TKLLEGLNINPHVRAEEISVSQWVSLVNSL 268 >gi|124087844|ref|XP_001346899.1| Ribosomal RNA adenine dimethylase [Paramecium tetraurelia strain d4-2] gi|145474821|ref|XP_001423433.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057288|emb|CAH03272.1| Ribosomal RNA adenine dimethylase, putative [Paramecium tetraurelia] gi|124390493|emb|CAK56035.1| unnamed protein product [Paramecium tetraurelia] Length = 353 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 13/209 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K +S ++ K GQ+ L++ IL+ I + S V+EIG G GNLT++LL Sbjct: 1 MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQ-R 59 Query: 70 ARKVIVIEKDQQFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A++VI +E D + L + SQ+ ++ ++IQ D L + FF++ +AN+PY Sbjct: 60 AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F ++ P W L+FQ+E R+ A+ + Y RLS ++ + Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + + F P PKV S+V+ P NPIP Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPK-NPIP 198 >gi|331703024|ref|YP_004399711.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801579|emb|CBW53732.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 266 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 131/270 (48%), Gaps = 25/270 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KKY GQNF+ DLN++ +I + ++EIG G G LT+ L+ KV+VIE DQ Sbjct: 3 AKKYYGQNFISDLNLINRIVDVLDQNKDQLIVEIGPGKGALTKELVK-RFDKVVVIEIDQ 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTRLLFNW 137 ILK H N LEIIQ D L++D ++ +N + I II+N PY I + +LF Sbjct: 62 DMVEILK-TKFNHSN-LEIIQADVLELDLKQLISKYNYKN-ISIISNTPYYITSEILFKT 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + QKEV RI + KN +Y LS+ + ++ F ++ +F+P Sbjct: 119 LQI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYP 175 Query: 198 SPKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGG 246 PKV S +I + +N ++ ++ + F +RKT + Sbjct: 176 IPKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLL----FNNKRKTILNNLNNIIQNKNKA 231 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ I +NLR E L I+ + ++ N++ Sbjct: 232 LEYLNTLNINSNLRPEQLDIDQYIKLFNLI 261 >gi|145545245|ref|XP_001458307.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426126|emb|CAK90910.1| unnamed protein product [Paramecium tetraurelia] Length = 353 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 13/209 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K +S ++ K GQ+ L++ IL+ I + S V+EIG G GNLT++LL Sbjct: 1 MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQ-R 59 Query: 70 ARKVIVIEKDQQFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A++VI +E D + L + SQ+ ++ ++IQ D L + FF++ +AN+PY Sbjct: 60 AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F ++ P W L+FQ+E R+ A+ + Y RLS ++ + Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + + F P PKV S+V+ P NPIP Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPK-NPIP 198 >gi|256384236|gb|ACU78806.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri str. GM12] gi|256385069|gb|ACU79638.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455258|gb|ADH21493.1| dimethyladenosine transferase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 266 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 23/269 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KKY GQNF+ DLN++ KI + +IEIG G G LT+ L+ KV+VIE D+ Sbjct: 3 AKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVK-RFDKVVVIEIDK 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138 ILK H N LEIIQ D L++D ++ + I II+N PY I + +LF + Sbjct: 62 DMVEILK-TKFNHSN-LEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV RI + KN +Y LS+ + ++ F ++ +F+P Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPI 176 Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247 PKV S +I + +N ++ ++ + F +RKT + Sbjct: 177 PKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLL----FNNKRKTILNNLNNIIQNKNKAL 232 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ I +NLR E L I+ + ++ N++ Sbjct: 233 EYLNTLNISSNLRPEQLDIDQYIKLFNLI 261 >gi|78499686|gb|ABB45840.1| hypothetical protein [Eutrema halophilum] Length = 310 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL I S TV+EIG G GNLT LL A+ V+ +E D++ Sbjct: 49 KSKGQHLLTNNRILDAIVRISDVRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVEIDKRM 107 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL + H ++L IIQ D LK DF +F ++AN+PYNI + L+ + Sbjct: 108 VEILGKRVADHGLEDKLTIIQKDVLKTDFPQF------DLVVANIPYNISSPLVAKLVYG 161 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S TLL QKE R+ A + RL+V + D+S F P PK Sbjct: 162 SN---AFRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVQFVMDVSKREFVPPPK 218 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+++ P ++ T+ FG + KTL Sbjct: 219 VDSSLVIIRPKEVKPDVDVQEWLAFTRTCFGNKNKTL 255 >gi|302534918|ref|ZP_07287260.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces sp. C] gi|302443813|gb|EFL15629.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces sp. C] Length = 285 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 13/235 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 25 IRELAAVLGVRPTKQKGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALLE-A 83 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V +E D L I ++ P +R ++ DA+ V +P ++ANL Sbjct: 84 ADRVTAVEIDDILAAALPATIEARMPHKKDRFALVHSDAMLV---TELPGPAPTALVANL 140 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + D +P +L ++ Q EV +R+ A+ + YG SV W Sbjct: 141 PYNVAVPVLLTML--DRFPSIERTL-VMVQSEVADRLAARPGNKVYGVPSVKAAWYADVK 197 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR 238 I +VF+P+P V S ++ + P+ + + AF +RRK LR Sbjct: 198 RAGAIGRNVFWPAPNVDSGLVSLVRRAEPVKTTASKAEVFAVVDAAFAQRRKGLR 252 >gi|282899539|ref|ZP_06307503.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505] gi|281195418|gb|EFA70351.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505] Length = 281 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 19/270 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L I +++ ++EIG G G LT+ LL L ++ +E D+ Sbjct: 4 PQKQFAQHWLRSEKALNSIVKAAECQVNDRILEIGPGTGILTKRLLPL-VDSLLAVEIDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136 +L N L ++Q D L + F +++AN+PYNI ++ Sbjct: 63 DLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPIIEK 121 Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + AD P ++S+ LL QKEV +R+ A+ S ++G LSV + + + + Sbjct: 122 LLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPASA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLK----RLGG 246 F+P PKV S V+ +P I P LE++ K+ FG +RK LR +L+ R Sbjct: 182 FYPPPKVDSAVVRLLPRNMEIGANDPKLLENMVKL---GFGCKRKMLRNNLQSVIDRESL 238 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL I ++RAE +S+ + + N L Sbjct: 239 TKLLEGLNINPHVRAEEISVSQWVSLVNSL 268 >gi|307638086|gb|ADN80536.1| Dimethyl adenosine transferase [Helicobacter pylori 908] gi|325996687|gb|ADZ52092.1| Dimethyladenosine transferase [Helicobacter pylori 2018] gi|325998279|gb|ADZ50487.1| Dimethyladenosine transferase [Helicobacter pylori 2017] Length = 271 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVGALSPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 HLCEKMRARLK--AEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 PSPKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|308185189|ref|YP_003929322.1| dimethyladenosine transferase [Helicobacter pylori SJM180] gi|308061109|gb|ADO03005.1| dimethyladenosine transferase [Helicobacter pylori SJM180] Length = 279 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 10 VVAKKSLGQHFLTDESFLDRIINALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 69 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 70 SLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 121 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 122 ALKD----PKCRGLLVMTQKEVALKFCAKGSQ---NALSVLAHTIGDATLLFDVPPSAFS 174 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 PSPKV S+V I L P E+L+K + F RKTL + Sbjct: 175 PSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 234 Query: 241 LKR 243 LK+ Sbjct: 235 LKK 237 >gi|15612387|ref|NP_224040.1| dimethyladenosine transferase [Helicobacter pylori J99] gi|27151619|sp|Q9ZJI7|RSMA_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|4155935|gb|AAD06902.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99] Length = 271 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL+D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ L+ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 NLCEKMRARLR--AEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|294784979|ref|ZP_06750267.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27] gi|294486693|gb|EFG34055.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27] Length = 264 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL +I E S D ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N +I D L++D ++ N + +++AN+PY I + ++ I Sbjct: 65 DLENTLRKKFSSKEN-YTLIMGDVLEIDLRRYINQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + +A +F I F P P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPIPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISESL--FFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q + N RAEN+SI+ F + NI Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261 >gi|302820073|ref|XP_002991705.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii] gi|300140554|gb|EFJ07276.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii] Length = 344 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 126/273 (46%), Gaps = 20/273 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PK+++GQN++++ NI +I ++ G V+EIG G G LT LL GA VI +EKD Sbjct: 63 PKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY-VIAVEKDP 121 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSP---IRIIANLPYNIGTR 132 ++ + +P + QDD LK + I SP +++++NLP+NI T Sbjct: 122 DMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTD 181 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + + ++ LL Q E R I Y +S+ + ++ F + Sbjct: 182 VVKKLLPMGD---LFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFSEMEYKFKVD 238 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGG-- 246 FFP P V V+ F + ++S+K+ + AF +RK LR SL+ L Sbjct: 239 RLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRTSLRHLYSSS 298 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 EN L G+ R LS F ++ N L Sbjct: 299 EVENALCSIGVIETARPHQLSFSQFVKLHNTLA 331 >gi|163846476|ref|YP_001634520.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl] gi|222524255|ref|YP_002568726.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl] gi|163667765|gb|ABY34131.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl] gi|222448134|gb|ACM52400.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl] Length = 290 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 27/288 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ L + P + MGQNFLLD +L I + + V+E+G G G LT L+ Sbjct: 10 IRAALRALNLRPTRGMGQNFLLDGQVLATIVDEAKLNASDAVVEVGPGLGVLTWELVQRA 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLP 126 R VI +E D++ L + + L +IQ D LKV D + P +++AN+P Sbjct: 70 GR-VICVELDRRLADRLA-AEFRDQSHLYLIQGDVLKVAPSDLLARAAATPPYKLVANIP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I LL +++ A T P + LL Q EV ERI A Y L+ + T+ Sbjct: 128 YAITAPLLRHFLEATTPP---DLSILLVQWEVAERICAGPGD--YSVLAHAVQLYAEPTI 182 Query: 187 MFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + + FFP+P V S ++ + P L + +L ++ + F RK L +L Sbjct: 183 VARVPAASFFPAPAVDSAILRLVRRPQLAVAVDDVNALFRLIKAGFLHARKQLGNALP-- 240 Query: 245 GG-------------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 GG LH AGI+ RAE +++ ++ ++ +L+++ Sbjct: 241 GGLAALGVTVSREHVVQALHAAGIDPQRRAETVTLAEWAKLLAVLSES 288 >gi|254302694|ref|ZP_04970052.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322886|gb|EDK88136.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 264 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 127/266 (47%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N + ++ D L+VD K+ N + +++AN+PY I + ++ I Sbjct: 65 DLENTLRKKFSSKENYI-LVMGDVLEVDLRKYINQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + + +F I F P P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGETEYLFTIPREFFNPIPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q + N RAEN+S + F + NI Sbjct: 236 NQIEVSENERAENISTDKFIELINIF 261 >gi|317506076|ref|ZP_07963904.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974] gi|316255648|gb|EFV14890.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974] Length = 296 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 139/275 (50%), Gaps = 17/275 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D +++I ++G +V+EIG G G+LT LL + Sbjct: 26 VRALAGQLDVRPTKRLGQNFVHDPGTIRRIVAAAGLRPEDSVLEIGPGLGSLTLGLLDV- 84 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A V +E D + L + I+ + P R ++ DAL++D ++P ++ANLPY Sbjct: 85 AHDVTAVEVDPKLAEALPRTIAERAPGRQFRLVVKDALQLDAADL--PTAPTALVANLPY 142 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ + ++ +P +L ++ Q EVG+R+ A+ + G ++ T + +A + Sbjct: 143 NVAVPVFLRALA--EFPSIRRALVMV-QLEVGQRLAAKPGAREGGVPTLKTAFYGEAELT 199 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPC---CLESLKKITQEAFGKRRKTLRQSLKR 243 +SP VF+P P V S ++ F + P P +++ ++ AF RRKTL LK Sbjct: 200 NKVSPEVFWPRPNVDSALVRFTRREDSPWPTDEQTRQAVFRLIDAAFASRRKTLGAVLKP 259 Query: 244 LGG--ENL---LHQAGIETNLRAENLSIEDFCRIT 273 G E L L AG+ + R E L IE F + Sbjct: 260 WAGSPEELRRRLEAAGVPGSARGEELGIEQFVALA 294 >gi|256845838|ref|ZP_05551296.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2] gi|256719397|gb|EEU32952.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2] Length = 264 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL +I E S D ++EIG G G LT +L+ +KV +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N + +I D L++D ++ N + +++AN+PY I + ++ I Sbjct: 65 DLENTLRKKFSSKENYI-LIMGDVLEIDLRRYINQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + +A +F I F P P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTILREFFNPIPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q + N RAEN+SI+ F + NI Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261 >gi|297626914|ref|YP_003688677.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922679|emb|CBL57256.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 289 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 17/268 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K +GQNF++D N +++I + V+E+G G + L A V +E D Sbjct: 24 PTKTLGQNFVVDANTVRRIVSLADVGPEDEVLEVGPG-LGSLTLGLLASAAGVTAVEIDP 82 Query: 81 QFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L ++H RL ++ DDAL+V+ +P R++ANLPYN+ +L + Sbjct: 83 VLAAQLPLTVAEHQPDRAGRLRVVTDDALRVES---LPGPAPTRLVANLPYNVAVPVLLH 139 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + W + ++ Q EV +R+ A S YG S W +A + P VF+ Sbjct: 140 MLERFA---SWRAGLVMVQLEVADRLVATPGSRTYGVPSAKLAWYAEAHKAGTVPPSVFW 196 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 P P V S ++ P E + + AF +RRK LR +L R+ G + Sbjct: 197 PVPNVESGLVAIQRREPPATSASREQVFAVIDAAFAQRRKMLRSALARIVGSSAAASAAI 256 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTD 278 AGI+ +R E L I F I L + Sbjct: 257 EAAGIDPTVRGEALDIAAFAAIAEQLPN 284 >gi|217032121|ref|ZP_03437621.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128] gi|298735609|ref|YP_003728134.1| dimethyladenosine transferase [Helicobacter pylori B8] gi|216946269|gb|EEC24877.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128] gi|298354798|emb|CBI65670.1| dimethyladenosine transferase [Helicobacter pylori B8] Length = 271 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L +P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|108563781|ref|YP_628097.1| dimethyladenosine transferase [Helicobacter pylori HPAG1] gi|118600871|sp|Q1CRJ9|RSMA_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|107837554|gb|ABF85423.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori HPAG1] Length = 271 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + ++EIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--VQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L +P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|115935835|ref|XP_001176419.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 306 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 25/261 (9%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + +++ I + TV+E+G G GN+T +L A+KV+ E D + Sbjct: 27 IGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKMLD-KAKKVVACELDPRLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L++I D LK D FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E +R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ P P P + + + AF ++ KTL + + G +L E N R Sbjct: 197 SSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRNKGVVEML-----EKNYRVH 251 Query: 263 NLSIEDFCRITNI-LTDNQDI 282 C + NI + DN D+ Sbjct: 252 -------CSVKNIAIPDNLDM 265 >gi|300681336|emb|CAZ96067.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570] Length = 319 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 22/269 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 G N++L+ + +++ ++G +G V+EIG G G+LT LL GA V +EKD+ + Sbjct: 54 GANYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKDKHMATL 112 Query: 86 LKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPIRIIANLPYNIGTRLLFN 136 +KD +L++I++D K EK+ ++++NLP+N+ T ++ Sbjct: 113 IKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSTEVVKL 171 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + ++ Q E R+ P Y ++V + +K F + F Sbjct: 172 LLPMGDV---FSVVVIMLQDETAVRLADTSIQIPEYRPINVFVNFYSKPEYKFRVDRDNF 228 Query: 196 FPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248 FP PKV VI F + + P +S + AF +RK LR+SL+ L E Sbjct: 229 FPQPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSSSEIEA 288 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L G+ R +L ++DF R+ N LT Sbjct: 289 ALDNIGLPVTARPSDLILDDFVRLHNHLT 317 >gi|291319987|ref|YP_003515245.1| dimethyladenosine transferase(S adenosylmethionine 6 N', N' adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High levelkasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Mycoplasma agalactiae] gi|290752316|emb|CBH40287.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N' adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High levelkasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Mycoplasma agalactiae] Length = 270 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 14/250 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL +++KKI + S +G +IEIG G G LT+ L+ K++ E D Sbjct: 19 KKKFGQNFLHSDSVIKKIVDII-SPEGKQIIEIGPGTGALTKHLVN-KCTKLVAFEIDPD 76 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + + ++ DD L + +++ + ++ N+PY I + ++F I Sbjct: 77 MIKFLNQQNYFNSENNMLVHDDFLNANLDQY----AYFEVVGNIPYYITSEIIFKLIENR 132 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ TLL QKEV +RI A NS Y +LS+ + K +S + F P PKV Sbjct: 133 F---LFKRATLLVQKEVADRIVAMPNSYEYSKLSITCQYVAKVKKELFVSKNNFSPVPKV 189 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIET 257 S ++ F + + E LK + F RRK L SLK++ + + A I Sbjct: 190 DSAIVTFDFYQDKND-NYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAYSVLNISE 248 Query: 258 NLRAENLSIE 267 N+R + L +E Sbjct: 249 NIRIQQLDLE 258 >gi|154341407|ref|XP_001566655.1| ribosomal RNA adenine dimethylase family protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063980|emb|CAM40171.1| putative ribosomal RNA adenine dimethylase family protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 366 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 13/223 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 S I+ K GQ+ L + ++ I E S V+EIG G GNLT+ LL A+KVI Sbjct: 64 SQSGIVFNKGFGQHILKNPLVIAAIVEKSAIKPTDVVVEIGPGTGNLTEKLLQT-AKKVI 122 Query: 75 VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 E D + L P ++L+II+ + L+ DF F + +AN+PY I + Sbjct: 123 AFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVANVPYAISSA 176 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + + + IS Sbjct: 177 LVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARCSHLMKISR 232 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235 + F P PKV S+VI P P E + + F ++ K Sbjct: 233 NSFNPPPKVESSVIRLDPKCPPPDVDFEEWDGLVKMLFNRKNK 275 >gi|318041295|ref|ZP_07973251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Synechococcus sp. CB0101] Length = 270 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 18/253 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D +L +I ++ TV+E+G G G LT+ LL A V +E D+ Sbjct: 9 RKRFGQHWLKDERVLDQILAAAELSAADTVLEVGPGRGALTERLLASPAAAVRAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S P R ++ D L V + + +AN+PYNI LL + Sbjct: 69 LVEGLQERFSGDP-RFDLTPGDVLAVPLPEAGIV------VANIPYNITGPLLERLVGRL 121 Query: 142 TWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + L LL Q+EVGERI A+ S Y LSV + + + + P F P P Sbjct: 122 DRPVAQPYRRLVLLMQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCLVPPRCFQPPP 181 Query: 200 KVTSTVIHFIPHLNP----IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251 KV S V+ P L P P +++ + + F RRK LR +L L + L Sbjct: 182 KVMSEVVAIDP-LPPDQQLDPALARTVETLLRRCFAARRKMLRNTLAGLQPPDQLQALTA 240 Query: 252 QAGIETNLRAENL 264 +AGI R + + Sbjct: 241 EAGIGLEQRPQEV 253 >gi|115757168|ref|XP_779962.2| PREDICTED: similar to putative dimethyladenosine transferase [Strongylocentrotus purpuratus] Length = 292 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 25/261 (9%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + +++ I + TV+E+G G GN+T +L A+KV+ E D + Sbjct: 13 IGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKMLD-KAKKVVACELDPRLVA 71 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L++I D LK D FF++ +ANLPY I + +F + Sbjct: 72 ELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VANLPYQISSPFVFKLL---L 122 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E +R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 123 HRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVE 182 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ P P P + + + AF ++ KTL + + G +L E N R Sbjct: 183 SSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRNKGVVEML-----EKNYRVH 237 Query: 263 NLSIEDFCRITNI-LTDNQDI 282 C + NI + DN D+ Sbjct: 238 -------CSVKNIAIPDNLDM 251 >gi|298706896|emb|CBJ25860.1| conserved unknown protein [Ectocarpus siliculosus] Length = 310 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 12/193 (6%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDIS-SQHPNRLEIIQDDALKVD 108 V+EIG G GNLT LL A++VI +E D + ++K + ++ L+IIQ D LKV Sbjct: 15 VLEIGPGTGNLTVRLLE-RAKRVIAVELDTRMVREVMKRVEGTEWEKSLQIIQGDVLKVP 73 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 FF++ ++AN+PYNI + LLF ++ P + ++FQ+E +R+TA+ N+ Sbjct: 74 L-PFFDV-----LVANVPYNISSPLLFKLLAHR---PMFRCAVIMFQEEFAQRLTARPNT 124 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228 + RLSV T K +F ++ + F P PKV S V+ P P + + Sbjct: 125 DMWCRLSVNTQLLAKVDQLFKVNRNNFRPPPKVDSRVVRIELRNPPPPVNFTEWDGMIRV 184 Query: 229 AFGKRRKTLRQSL 241 F ++ KTLR +L Sbjct: 185 IFNRKHKTLRATL 197 >gi|148377319|ref|YP_001256195.1| dimethyladenosine transferase(S-adenosylmethionine-6-N', N'-adenosyl(rRNA)dimethyltransferase) (16S rRNA dimethylase) (high levelkasugamycin resistance protein ksgA) (kasugamycindimethyltransferase) [Mycoplasma agalactiae PG2] gi|148291365|emb|CAL58748.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N' adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High levelkasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Mycoplasma agalactiae PG2] Length = 270 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 14/250 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL +++KKI + S +G +IEIG G G LT+ L+ K++ E D Sbjct: 19 KKKFGQNFLHSDSVIKKIVDII-SPEGKQIIEIGPGTGALTKHLVN-KCSKLVAFEIDPD 76 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + + ++ DD L + +++ ++ N+PY I + ++F I Sbjct: 77 MIEFLNQQNYFNSENNMLVHDDFLNANLDQYV----YFEVVGNIPYYITSEIIFKLIENR 132 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ TLL QKEV +RI A NS Y +LS+ + K +S + F P PKV Sbjct: 133 F---LFKRATLLVQKEVADRIVAAPNSYEYSKLSITCQYVAKVKKELFVSKNNFSPIPKV 189 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIET 257 S ++ F + N E LK + F RRK L SLK++ + + A I Sbjct: 190 DSAIVTFDFYQNHND-NYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAYSLLNISE 248 Query: 258 NLRAENLSIE 267 N+R + L +E Sbjct: 249 NIRIQQLDLE 258 >gi|261840104|gb|ACX99869.1| dimethyladenosine transferase [Helicobacter pylori 52] Length = 271 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 114/241 (47%), Gaps = 29/241 (12%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 K + + P +LE+++ DAL F P +I+NLPY I TRL+ N + Sbjct: 62 SLCEKTRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLNAL 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P L ++ QKEV + A+ + LSVLT AT++FD+ P F P Sbjct: 116 KD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGSATLLFDVPPSAFSPP 168 Query: 199 PKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQSLK 242 PKV S+V I L P E+L+K + F RKTL +LK Sbjct: 169 PKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNNLK 228 Query: 243 R 243 + Sbjct: 229 K 229 >gi|254779942|ref|YP_003058049.1| dimethyladenosine transferase [Helicobacter pylori B38] gi|254001855|emb|CAX30105.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Helicobacter pylori B38] Length = 271 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 NLCEKMRSKLK--AQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|304315447|ref|YP_003850594.1| dimethyladenosine transferase [Methanothermobacter marburgensis str. Marburg] gi|302588906|gb|ADL59281.1| predicted dimethyladenosine transferase [Methanothermobacter marburgensis str. Marburg] Length = 273 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 15/246 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + +L Y + ++ +GQN+L+D ++I V+EIGAG G LT Sbjct: 1 MTGLYRETRDVLRKYGVRLRRSLGQNYLVDDGKRQRILGYGNLGPDDHVLEIGAGIGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + L A V IE D IL D + ++II DALKVDF F +++ Sbjct: 61 LPMAEL-AGHVTAIESDPFIAGILAD--RIKGDNVDIIVGDALKVDFPAFN------KVV 111 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY I + + F + + +E L++QKE R+ A+ + Y RLSV+ + Sbjct: 112 SNLPYQISSPVTFRLLRHE-----FELGVLMYQKEFAARMVAEPGTRDYSRLSVMLHFLA 166 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241 + ++ + P FFP P+V S V+ P +P E + + + Q K K+LR+S Sbjct: 167 EVQIVDYLKPGCFFPRPRVDSAVVTVRPTGFSLPALFEDVCRALFQHRKKKTSKSLRESF 226 Query: 242 KRLGGE 247 + + Sbjct: 227 HEIKAD 232 >gi|188528194|ref|YP_001910881.1| dimethyladenosine transferase [Helicobacter pylori Shi470] gi|226732587|sp|B2UVG9|RSMA_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|188144434|gb|ACD48851.1| dimethyladenosine transferase [Helicobacter pylori Shi470] gi|308064183|gb|ADO06070.1| dimethyladenosine transferase [Helicobacter pylori Sat464] Length = 271 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDHYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|302818711|ref|XP_002991028.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii] gi|300141122|gb|EFJ07836.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii] Length = 344 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 125/273 (45%), Gaps = 20/273 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PK+++GQN++++ NI +I ++ G V+EIG G G LT LL GA VI +EKD Sbjct: 63 PKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY-VIAVEKDP 121 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSP---IRIIANLPYNIGTR 132 ++ + +P + QDD LK + I SP +++++NLP+NI T Sbjct: 122 DMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTD 181 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + + ++ LL Q E R I Y +S+ + ++ F + Sbjct: 182 VVKKLLPMGD---LFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFSEMEYKFKVD 238 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGG-- 246 FFP P V V+ F + ++S+K+ + AF +RK LR SL+ L Sbjct: 239 RLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRTSLRHLYSSS 298 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 EN L G+ R LS F + N L Sbjct: 299 EVENALCSIGVVETARPHQLSFSQFVNLHNTLA 331 >gi|119871918|ref|YP_929925.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184] gi|226732612|sp|A1RRK0|RSMA_PYRIL RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|119673326|gb|ABL87582.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184] Length = 235 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ Q+FL D ++ + I E S G+ +IE+G G G LT + L ++ + IE D Sbjct: 3 KRRWSQHFLRDTSVAQFITELVPS--GLDIIEVGPGRGALT-LPLAEKSKTIYAIEIDPT 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139 LK Q P + +I DAL++++ + FF ++N+PY+I + LL Sbjct: 60 LAEFLK---RQAPPNVVVIVGDALEIEWPRADFF--------VSNIPYSITSPLLLKLAK 108 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEV ER+ A + +YGRL+V ++ + PHVF P P Sbjct: 109 ------YRLPAVVTIQKEVAERLVAAPGTENYGRLTVAIRCHYDVEVLRILPPHVFSPPP 162 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256 KV S V+ P PC E+ ++ T F RRKTLR+ LK E ++Q +E Sbjct: 163 KVYSAVVRLTPRR---PCVEDFENFQRFTARLFSTRRKTLRR-LKLGETEKRVYQLTLEE 218 Query: 257 -TNLRAENLSIEDFCR 271 L ++ + CR Sbjct: 219 IVELYKKHFDTTETCR 234 >gi|195953427|ref|YP_002121717.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp. Y04AAS1] gi|254807870|sp|B4U9C8|RSMA_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|195933039|gb|ACG57739.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp. Y04AAS1] Length = 252 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 117/257 (45%), Gaps = 21/257 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK GQNFL NI I E + TVIEIG G G LT+ L +++I++E D+ Sbjct: 4 PKKTFGQNFLKSKNIAHSIVELLDVKEDDTVIEIGPGLGALTEFLYQKPKKELILVELDK 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 F +L+ ++ N ++ +DA VD + N ++II NLPYN+ +L N I+ Sbjct: 64 DIFGLLE---KKYKNA-TLLNEDASLVDLSSYKN----LKIIGNLPYNMYASILINMINQ 115 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + + QKEVGER+ +S L F + F P PK Sbjct: 116 EK---HISKMVFMLQKEVGERLIT--DSKDKSWLWAYANTYFNIHYAFSVPGRFFEPVPK 170 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 VTS V+ F + ++ ++ F RRK L+ L + + L R Sbjct: 171 VTSCVLVFDKKEDTPSFEKQNYMDFLKKMFSNRRKMLKHKLNNIEDKYALK--------R 222 Query: 261 AENLSIEDFCRITNILT 277 E LS+ED I N L+ Sbjct: 223 VEELSLEDIKYIYNTLS 239 >gi|172040243|ref|YP_001799957.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM 7109] gi|171851547|emb|CAQ04523.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM 7109] Length = 366 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 32/288 (11%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N ++KI ++ VIE+G G G+LT LL Sbjct: 68 IRQLAEELGVNPTKKLGQNFVHDPNTVRKILHAADVGPQDHVIEVGPGLGSLTLALLG-A 126 Query: 70 ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF--NISSPIRIIA 123 +V IE D L ++H ++L +I DALKV + +++P ++A Sbjct: 127 VGEVTAIEIDPLLAGRLPRTVAEHAAPVADKLHLILRDALKVTAADWAEQGLAAPTALVA 186 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L + + + +P L ++ Q EV +R+ A+ S YG SV + Sbjct: 187 NLPYNVSVPVLLHLL--EQFPTISRVLVMV-QLEVADRLAAKPGSKIYGVPSVKARYFGD 243 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHF----------IPHLNPIPCCLESLKKITQE----- 228 I +VF+P+PKV S ++ P + + + + E Sbjct: 244 TFRAATIGKNVFWPAPKVDSGLVRIDRWGVGDKPAAPWAEAVASSGFAEEVVRGETFALA 303 Query: 229 --AFGKRRKTLRQSLK-RLGG----ENLLHQAGIETNLRAENLSIEDF 269 AF +RRKTLR +L GG E++L AGI+ R E L E+F Sbjct: 304 DAAFLQRRKTLRAALSGHFGGGQQAEDVLRAAGIDPKQRGEKLGAEEF 351 >gi|146093446|ref|XP_001466834.1| ribosomal RNA adenine dimethylase family protein [Leishmania infantum JPCM5] gi|134071198|emb|CAM69883.1| putative ribosomal RNA adenine dimethylase family protein [Leishmania infantum JPCM5] Length = 374 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +KT S I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL Sbjct: 57 SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KVI E D + L P ++L+II+ + L+ DF F + +AN Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIP-HLNP 214 + + IS + F P PKV S+VI P H P Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRP 256 >gi|156740307|ref|YP_001430436.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941] gi|156231635|gb|ABU56418.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941] Length = 302 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 140/307 (45%), Gaps = 45/307 (14%) Query: 1 MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT N SL + L + P + MGQNFL+D L KI ++ TVIE+G G Sbjct: 1 MTSANPYLSLARVRAALHALDLRPSRSMGQNFLIDGAALAKIVNAAQLTSDDTVIEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113 G LT L+ R VI +E D + L+ N L IIQ D L++ E Sbjct: 61 LGVLTWELMH-RTRAVIAVELDHRLADRLRAEFRAFSN-LAIIQGDVLRLPPEAILAEHD 118 Query: 114 -NISS---PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + SS P +++ANLPY I + L +++S P + +L Q+EV +RI A+ Sbjct: 119 PDASSGARPYKVVANLPYAITSAALRHFLSNPLRPAL---MVVLVQREVADRICARP--- 172 Query: 170 HYGRLSVLTGW---RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESL 222 G LSVL + ++ I FFP+P+V STV+ + P P + E+L Sbjct: 173 --GNLSVLAHAVQIYAEPEIIARIPASCFFPTPEVESTVLRL--RIRPQPAVVPDQPEAL 228 Query: 223 KKITQEAFGKRRKTLRQSLKRLGGE-------------NLLHQAGIETNLRAENLSIEDF 269 ++ + F RK L +L GG N L AGI RAE ++++++ Sbjct: 229 LRLIKAGFLHPRKQLGNALP--GGMAAMGMKTDKQKILNALTAAGINATRRAETVTLDEW 286 Query: 270 CRITNIL 276 + L Sbjct: 287 GAVYRAL 293 >gi|322500967|emb|CBZ36044.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 374 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +KT S I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL Sbjct: 57 SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KVI E D + L P ++L+II+ + L+ DF F + +AN Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIP-HLNP 214 + + IS + F P PKV S+VI P H P Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRP 256 >gi|47459399|ref|YP_016261.1| dimethyladenosine transferase [Mycoplasma mobile 163K] gi|62900531|sp|Q6KH80|RSMA_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|47458729|gb|AAT28050.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma mobile 163K] Length = 254 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 20/248 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL D NI++KI + L+ V+EIG G G LT +L+ ++ V+ E D++ Sbjct: 6 KKSLGQNFLQDKNIIEKIV-NFIPLENEDVLEIGPGQGALTNLLVK-KSKNVLAYEIDKE 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 P LK+ + +D LK +DF+ IIAN+PY I + +LF Sbjct: 64 LIPFLKE--KIKAKNFTLKHEDFLKSEIDFQ------DKKIIIANIPYFITSDILFKIFE 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 F+ ++ QKE+ +++ A+ N +YG+LSV + + + ++ F+P P Sbjct: 116 NHK---FFTKALIMVQKEIADKLIAKANDSNYGKLSVSSQFFANIKKVINVPRTCFYPQP 172 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S V++F + +E + F ++RK L +LK N+ I++ L Sbjct: 173 NVDSAVVYFEFKNDIENIDIEKFLVFIKTCFSQQRKKLSNNLK-----NVYDLEKIKSVL 227 Query: 260 RAENLSIE 267 + NLS E Sbjct: 228 KKLNLSFE 235 >gi|56751211|ref|YP_171912.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301] gi|81299122|ref|YP_399330.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942] gi|62900470|sp|Q5N2S8|RSMA_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365855|sp|Q31RH6|RSMA_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56686170|dbj|BAD79392.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301] gi|81168003|gb|ABB56343.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942] Length = 279 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 129/274 (47%), Gaps = 13/274 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L IL +I ++ V+EIG G G LTQ LL ++ +E D+ Sbjct: 4 RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLA-AVDGLVAVELDRD 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFNW 137 L+ Q N +++ D L++D+ ++P +++AN+PYNI +L + Sbjct: 63 LIGQLQQRFGQAEN-FCLLEGDILQLDWTAAIADRPRFANPSKVVANIPYNITGPILQSL 121 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P P +E L LL Q+EV +R+ A YG LSV + + + P F Sbjct: 122 LGTIAQPRRPAFERLVLLVQQEVADRLCATPGQRAYGALSVRVQYLASCERVCAVPPKSF 181 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253 P PKV STVI P P C L+K+ + F +RK LR +LK L + A Sbjct: 182 SPPPKVQSTVICLKPRPWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSSEQIEAAF 241 Query: 254 ---GIETNLRAENLSIEDFCRITNILTDNQDIAI 284 I RAE LSI+ + + L D D AI Sbjct: 242 AAHQIAPEARAETLSIDQWIGLCTDLGDPTDSAI 275 >gi|315926638|gb|EFV06018.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 254 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 14/225 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + K I+ D Sbjct: 5 KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138 PILK + LE + + + D + FN S P ++ANLPY + + ++ + Sbjct: 62 LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F P Sbjct: 119 EDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK 242 PKV S V+ I + C +E+ K ++ F RK L +LK Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLK 219 >gi|268678704|ref|YP_003303135.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM 6946] gi|268616735|gb|ACZ11100.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM 6946] Length = 281 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 6/188 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D ++ KI +S + +IEIG G G+LTQ LL + +++ Sbjct: 2 IEAKKKFGQNFLKDTTVVSKIIQSMPQ-NNRKLIEIGPGLGDLTQALLRVKPVTAYEVDE 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + K + +L ++Q D LK FEK P ++ANLPY I T ++ + Sbjct: 61 DLCVYLRKKYTTKLAEGQLILVQTDVLK-QFEKGSLCEEPYDLVANLPYYIATTIILEAL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +S+ ++ QKEV E+ A + + L++L AT++FD+SP F P Sbjct: 120 EDQNC----KSMIVMVQKEVAEKFAALPKTKEFTSLAILAQSIGTATILFDVSPESFEPQ 175 Query: 199 PKVTSTVI 206 PKV S+++ Sbjct: 176 PKVVSSIL 183 >gi|210135592|ref|YP_002302031.1| dimethyladenosine transferase [Helicobacter pylori P12] gi|226732585|sp|B6JNS3|RSMA_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|210133560|gb|ACJ08551.1| 16S rRNA (adenosine-n6,n6)-dimethyltransferase [Helicobacter pylori P12] Length = 271 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + + + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQ---NALSVLVHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L +P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis] Length = 351 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 32/292 (10%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 HS +L P+K +GQ+++L+ I + + + + +G V+EIG G G LT L+ Sbjct: 66 HSTLKVLQSRGRFPRKSLGQHYMLNSAINELMVKEAQLKEGDVVLEIGPGTGALTNALVN 125 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KFFNISSPI------- 119 GA V IEKD ++ + + + +++++Q+D + E + + S+ I Sbjct: 126 AGAH-VFAIEKDAHMAMLVSERFNNN-GKVKVVQEDFTRCHIEPQILSFSTSIAPGSNYG 183 Query: 120 ---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLS 175 ++++NLP+NI T +L + + + LL Q E+ R+ +P Y +++ Sbjct: 184 QMAKVVSNLPFNIATDVLKLLLPMGD---MFSHVVLLLQDEMALRVVGSSPGTPEYRQIN 240 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPIPCCLESLKKITQE 228 + + + F + FFP P V + V+ F PH+ + + Sbjct: 241 IFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLKQVVDYPHV----ASPKGFFSMVNS 296 Query: 229 AFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 AF +RK LR+SL+ L E+ L G+ R L ++DF R+ N+L Sbjct: 297 AFNGKRKMLRKSLQHLCASRDIESALRTLGLPETSRPGELEMDDFVRLYNLL 348 >gi|317178134|dbj|BAJ55923.1| dimethyladenosine transferase [Helicobacter pylori F16] Length = 271 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQVIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L +P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|169154349|emb|CAQ15218.1| novel protein similar to H.sapiens DIMT1L, DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) (DIMT1L, zgc:101122) [Danio rerio] Length = 306 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 17/262 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV+ E D + Sbjct: 27 IGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDTRLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P N+L+I+ D LK + FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ P P P ++ + + AF ++ K L + K E LL + + + Sbjct: 197 SSVVRIEPKNPPPPVNFQAWDGLVRIAFVRKNKMLSAAFKSAAVEKLLEK-NYKIHCSVH 255 Query: 263 NLSI-EDF---CRITNILTDNQ 280 N+ I EDF +I +IL +++ Sbjct: 256 NIEIPEDFNIAPKIESILQESK 277 >gi|313621079|gb|EFR92166.1| dimethyladenosine transferase [Listeria innocua FSL S4-378] Length = 162 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 10/154 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N + ++ +D LK D E+F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 + T ++ + D P +S+T + QKEV +R Sbjct: 132 YVTTPIILKLLH-DNIP--ADSMTFMLQKEVADR 162 >gi|327398208|ref|YP_004339077.1| dimethyladenosine transferase [Hippea maritima DSM 10411] gi|327180837|gb|AEA33018.1| dimethyladenosine transferase [Hippea maritima DSM 10411] Length = 241 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 14/221 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL++ + KI E D ++EIG G G LT+ L LG +K +V+E D+ Sbjct: 4 KKQLGQHFLINEGVALKITERLKLAD--LIVEIGGGKGALTEKLKELG-KKTVVVELDKD 60 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LKD S N + +++ D +FF + + NLPYN+ ++ N++ + Sbjct: 61 LLTTLKDKISGEDN-IFLVRGDG------RFFKLKKSAWVCGNLPYNVSKAIIKNFVFQN 113 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 F E + + QKEV E I A+ + + SVL +F + P F P PKV Sbjct: 114 E---FVEKMVFMVQKEVAETICAKTAQKRFSKFSVLCQLFYDVEKLFLVKPGSFLPQPKV 170 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 S V+ F N +P + + F RKT++ +L+ Sbjct: 171 DSAVVEFRRKKN-LPNIDKGFFSFLNQLFFFPRKTVKNNLR 210 >gi|283768668|ref|ZP_06341580.1| dimethyladenosine transferase [Bulleidia extructa W1219] gi|283105060|gb|EFC06432.1| dimethyladenosine transferase [Bulleidia extructa W1219] Length = 249 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 16/256 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D I K++AE + + DG+ V+E+G G G+LT+ L + A+KVI E D +L D Sbjct: 1 MDPVITKRVAEEANA-DGM-VLEVGPGIGSLTEQLAYV-AKKVIAYEIDLGLKKVLTDHF 57 Query: 91 SQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + N ++I D LKVD E + + + ANLPY I + +LF + + Sbjct: 58 ASFEN-VDIQFQDFLKVDLHEKVEDWKKQYGKVVVCANLPYYITSAVLFKVFAEEKI--- 113 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 E++T++ QKEVG+R A N Y LSV + +F + F PSPKV S +I Sbjct: 114 -ETITVMVQKEVGDRFHAMVNDHEYSALSVEGQSYYEVKKLFTVPGRSFNPSPKVDSVII 172 Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENL---LHQAGIETNLRAE 262 F E+ + FG+RRKT+R +L K E + L + I+ R + Sbjct: 173 QFQRKEVTPSFDREAYFGFIRNCFGQRRKTIRNNLQKNFSNEEIDKALQKCEIDPGQRPQ 232 Query: 263 NLSIEDFCRITNILTD 278 +LS+ + + +L + Sbjct: 233 SLSVLQYQSLFEVLYE 248 >gi|119961382|ref|YP_947119.1| dimethyladenosine transferase [Arthrobacter aurescens TC1] gi|166987690|sp|A1R4F7|RSMA_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119948241|gb|ABM07152.1| dimethyladenosine transferase [Arthrobacter aurescens TC1] Length = 293 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 26/279 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF++D N +++I ++ D TV+E+G G G+LT LL Sbjct: 20 IRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAAAIGDDETVLEVGPGLGSLTLGLLD-A 78 Query: 70 ARKVIVIEKDQQFFPILKD-----ISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRI 121 A+ V+ +E D P+L + + + P E ++ DA+KV P + Sbjct: 79 AKAVVAVEID----PVLAEKLPETVRAWRPGAEENFHLVLSDAMKVTELPL----PPTAL 130 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ ++ + + +P L ++ Q EV +R+ A S YG SV W Sbjct: 131 VANLPYNVAVPVVLHLLQ--HFPSLQHGL-VMVQDEVADRLAATPGSKIYGVPSVKAAWY 187 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS 240 I +VF+P+PK+ S ++ F H P E + + AF +RRKTLR + Sbjct: 188 GHMRKAGVIGMNVFWPAPKIHSGLVAFTRHDPPETHATREQVFAVIDAAFAQRRKTLRAA 247 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 L G E L AG++ R E L I + +I Sbjct: 248 LAGWAGSASEAERCLVAAGLDPTARGEVLDINAYVKIAE 286 >gi|225437553|ref|XP_002276165.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 350 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 14/226 (6%) Query: 16 HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 HY+ + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + V Sbjct: 20 HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I +E D + L+ P NRL++IQ D L+ D +F+I +AN+PY I + Sbjct: 79 IAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLP-YFDI-----CVANIPYQISS 132 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L F ++ P + ++FQ+E R+ AQ Y RLSV T + + + + Sbjct: 133 PLTFKLLA---HRPVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKVG 189 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + F P PKV S+V+ P P + + + F ++ KTL Sbjct: 190 KNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTL 235 >gi|42526590|ref|NP_971688.1| dimethyladenosine transferase [Treponema denticola ATCC 35405] gi|62900552|sp|Q73NS2|RSMA_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|41816783|gb|AAS11569.1| dimethyladenosine transferase [Treponema denticola ATCC 35405] Length = 293 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 32/286 (11%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAE---SSGSLD-GITVIEIGAGPGNLTQML 65 LK++L +K GQNFL+D KK E S +LD G V E+G G G +T +L Sbjct: 18 LKSLLETLGFAMQKKFGQNFLID----KKTRENLISFLTLDKGTRVWEVGPGLGAMTYLL 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIAN 124 L G + E D+ F +LK I ++ + +I+ D K P N Sbjct: 74 LEKGVH-LTAFEIDKGFISLLKKIFLENSKQNFTLIEGDVQKNWLPYLIEHGKPNVFFGN 132 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI + L+ + + A ++++ QKE ERITA+ + +Y SVL + Sbjct: 133 LPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYEC 189 Query: 185 TMMFDISPHVFFPSPKVTSTVI------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 ++ I F+P P V S + F + N + KI + F RRK ++ Sbjct: 190 KIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKN-----FKLFIKIVKALFSSRRKNIK 244 Query: 239 QSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 +L N +L ++G+ NLRAE+L++ DF +++I+ Sbjct: 245 NNLGSWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290 >gi|152965013|ref|YP_001360797.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216] gi|259494252|sp|A6W6U4|RSMA_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151359530|gb|ABS02533.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216] Length = 300 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 128/276 (46%), Gaps = 16/276 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + I P K +GQNF++D N +++I + V+E+G G G+LT LL Sbjct: 15 ARDVRDLADRLSIRPTKTLGQNFVVDANTVRRIVRVADLTPEDVVVEVGPGLGSLTLALL 74 Query: 67 TLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 +V+ +E D P + E++ DA+++ P ++A Sbjct: 75 E-AVDRVVAVEIDPVLAAELPATVAARGRPGTSFEVVLADAVQL---AELPGPPPTALVA 130 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L ++ +P + L ++ Q EV +R+ A S YG SV T W Sbjct: 131 NLPYNVAVPVLLTMLA--RFPSLRQGL-VMVQSEVADRLVAPPGSRTYGVPSVKTAWYAS 187 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLK 242 A + P VF+P P+V S ++ F P E + + AF +RRKTLR +L Sbjct: 188 AKRAGSVPPPVFWPVPRVDSGLVSFTRRPAPETTAGREEVFALVDAAFAQRRKTLRAALA 247 Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 G L AG++ ++R E L + DF RI Sbjct: 248 GWAGSPAAAEEALRAAGVDPSVRGEQLGVADFARIA 283 >gi|225709718|gb|ACO10705.1| Probable dimethyladenosine transferase [Caligus rogercresseyi] Length = 313 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 19/253 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + SG TV+EIG G GNLT LL + ++VIVIE D + Sbjct: 34 LGQHILKNPAIVDSIIDKSGLRPTDTVLEIGPGTGNLTAKLLQV-VKRVIVIEVDPRMVS 92 Query: 85 ILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++ P+R LEI+ DA+K D FF++ +AN+PY I + L+F + Sbjct: 93 EIQKRFQHSPHRPKLEILVGDAIKTDLP-FFDVC-----VANVPYQISSPLVFKLL---I 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ + L+FQ+E R+ A + RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRAAILMFQREFALRLIAPPGDKLFCRLSINTQLLSTVHHLLKVGRNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIE 256 S+V+ I H NP P + +T+ F ++ KTL + + +N ++ Sbjct: 204 SSVVR-IEHKNPPPPINFKEWDGLTRICFVRKNKTLGAAFSQTPVLMTLDKNYRTHLSLK 262 Query: 257 TNLRAENLSIEDF 269 + E SI+D Sbjct: 263 EEMVPEEFSIKDL 275 >gi|19703632|ref|NP_603194.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|27151573|sp|Q8R6B1|RSMA_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|19713742|gb|AAL94493.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 264 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +K+ +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVE-RVKKITCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N ++ +D L+VD ++ N + +++AN+PY I + ++ I Sbjct: 65 DLENTLRKKFSSKEN-YTLVMEDVLEVDLRRYINQGT--KVVANIPYYITSPIINKIIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K+ G L++ + ++ +F I F P P Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGESEYLFTIPREFFNPIPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q I N RAEN+SI+ F + I Sbjct: 236 NQIEISENERAENISIDKFIELIKIF 261 >gi|291235880|ref|XP_002737862.1| PREDICTED: Probable dimethyladenosine transferase-like [Saccoglossus kowalevskii] Length = 305 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 19/266 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ +GQ+ L + ++ I E + + +E+G G GN+T LL +KV+ E D + Sbjct: 23 KRDLGQHILKNPLVVDGIIEKAALRNTDVALEVGPGTGNMTVKLLD-KVKKVVACELDPR 81 Query: 82 FFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 ++ P+ +L++I D LK D FF++ +ANLPY I + +F + Sbjct: 82 LAAEVQKRVQGTPSQTKLQLIIGDVLKSDLP-FFDVC-----VANLPYQISSPFVFKLL- 134 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 PF+ L+FQ+E +R+ A+ Y RLS+ T + ++ + + F P P Sbjct: 135 --LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDLVMKVGKNNFRPPP 192 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-----RLGGENLLHQAG 254 KV S+V+ P P P + + + AF ++ KTL + K + +N Sbjct: 193 KVESSVVRLEPRNPPPPINFQEWDGLVRIAFTRKNKTLSAAFKHNSVLEMLEKNYRIHCS 252 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 ++ A + SI+D ++ IL DN+ Sbjct: 253 VKNITVATDFSIKD--KLEKILLDNE 276 >gi|317013195|gb|ADU83803.1| dimethyladenosine transferase [Helicobacter pylori Lithuania75] Length = 271 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL N Sbjct: 62 NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLALN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|18313918|ref|NP_560585.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2] gi|27151587|sp|Q8ZTJ4|RSMA_PYRAE RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|18161487|gb|AAL64767.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2] Length = 228 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 28/239 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + Q+FL D ++ + IA S G+ VIE+G G G LT + L ++ V IE D+ Sbjct: 3 RRRLAQHFLRDPSVAEYIAGLVPS--GLDVIEVGPGAGALT-IPLAKRSKTVYAIEIDKA 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ I+ P + II DAL+V++ + FF ++N+PY+I + LLF I Sbjct: 60 LAERLRGIA---PPNVVIIVGDALEVEWPRADFF--------VSNVPYSITSPLLFKLIR 108 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 L Q+EV ER+ A+ S YGRL+V ++ + P+VF P P Sbjct: 109 HRL------PAVLTIQREVAERLVARPGSEDYGRLTVAVQCFYDVEILRVLPPYVFDPPP 162 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 KV S V+ +P PC + +K + F RRKTLR+ LK ++Q +E Sbjct: 163 KVYSAVVRLMPK---APCVDNFDEFEKFSAWLFSARRKTLRR-LKLADSTKRVYQLTLE 217 >gi|19074123|ref|NP_584729.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1] gi|19068765|emb|CAD25233.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1] Length = 277 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 15/223 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L +L ++ I E + TV+E+G G GNLT LL A+KV+ E D + Sbjct: 8 KQHGQHILKNLGVIDTIIERARIKPTDTVLEVGGGTGNLTMKLLQ-KAKKVVCYEIDPRL 66 Query: 83 FPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L + P + ++ DALK DF F I NLPY I + +F + Sbjct: 67 AAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCITNLPYQISSPFVFKLLK 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D ++ ++FQKE +R+ A+ SP Y RLSV + + +S + F P P Sbjct: 121 YD-----FKCAFIMFQKEFSDRLVARPGSPEYCRLSVGAQILAQIDHVLKVSKNSFVPPP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 KV S+ + P + P L + + F ++ KTLR + K Sbjct: 176 KVESSFVRIEPRIPRPPIDLGEFDRFLKICFLRKNKTLRANFK 218 >gi|326531118|dbj|BAK04910.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 351 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I + G V+E+G G GNLT LL +V +E D + Sbjct: 39 KPRGQHLLTNPRVLDAIVRHAALRPGDAVLEVGPGTGNLTARLLAFPVNRVTAVETDPRM 98 Query: 83 FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFN 136 + + + +L +IQ DA++ +F +F ++ +AN+PY I + +LLF Sbjct: 99 VDAVTARFGALDMTRKLTVIQGDAMETEFPEF-DV-----CVANIPYGISSPLIAKLLFG 152 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + TLL QKE R+ A Y RL+ G ++ D+S F Sbjct: 153 AY-------HFRTATLLLQKEFARRLVAMPGDSEYNRLAANVGMVADVKLLMDVSKRDFV 205 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 P P+V S+++ P P L T+E FG++ KTL Sbjct: 206 PMPRVDSSLVEIRPRAAPPEVDLAEWLGFTRECFGQKNKTL 246 >gi|294055275|ref|YP_003548933.1| ribosomal RNA adenine methylase transferase [Coraliomargarita akajimensis DSM 45221] gi|293614608|gb|ADE54763.1| ribosomal RNA adenine methylase transferase [Coraliomargarita akajimensis DSM 45221] Length = 274 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 10/238 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L +P K +GQNFL+D NI++K E + +G +V+E+G G G LT+ +L Sbjct: 7 STRELLEALDHLPNKKLGQNFLVDGNIVRKSIELAEIDEGSSVVEVGPGLGTLTRAILGS 66 Query: 69 GARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANL 125 GA K+ +E+D L+D + Q PN ++ + D L S +I+ANL Sbjct: 67 GA-KLWAVERDSTLAEYLRDKVVPQQPN-FDLTEGDCLDHPRAGLPEELAESGFKIVANL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T W+ A P + + L+ QKE +R A ++G +S+ A Sbjct: 125 PYAVST----PWMEAIISGPLPQRMVLMLQKEAADRYIADSGIKNFGAISIFLQAAYHAH 180 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 +S + F P+PKV S ++ N + E+ + + F +RRK L K+ Sbjct: 181 SKHLVSANCFHPAPKVDSILLRLDLKENAVQFNAET-RACIRRIFTQRRKQLGALCKK 237 >gi|289642509|ref|ZP_06474653.1| dimethyladenosine transferase [Frankia symbiont of Datisca glomerata] gi|289507683|gb|EFD28638.1| dimethyladenosine transferase [Frankia symbiont of Datisca glomerata] Length = 319 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 125/275 (45%), Gaps = 16/275 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +++I + I P K GQNFL+D N ++++ +G TV+EIG G + L Sbjct: 33 VRSISAAVGIRPTKRRGQNFLVDPNTVRRLVRLAGVEPDETVLEIGPG-LGSLTLGLLPA 91 Query: 70 ARKVIVIEKDQQFFPILKDISSQH-----PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 AR+V+ +E D+ L + RL ++ D L+++ P + AN Sbjct: 92 ARRVVAVELDEALATALPATVTARLGPAVAARLTVLAADGLRLEPADISG-DPPSVLAAN 150 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ LL + + +P L ++ Q EV +R+TA YG SV W A Sbjct: 151 LPYNVAVPLLLGVL--ERFPSVRRGL-VMVQAEVADRLTASPGGRVYGVPSVKMAWYASA 207 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + VF+P P V S+++ F H P ++ AF +RRKTLR +L Sbjct: 208 RPAGPVPRAVFWPQPNVDSSLVAFSRHDRQGSPRLRRAVFAAVDAAFAQRRKTLRAALSG 267 Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E L AGI+ + R E L + F R+ Sbjct: 268 WAGSADQAERLALAAGIDPSARGEILDVAAFTRLA 302 >gi|308062691|gb|ADO04579.1| dimethyladenosine transferase [Helicobacter pylori Cuz20] Length = 279 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 10 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 69 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 70 SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 121 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 122 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGDATLLFDVPPSAFS 174 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 175 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 234 Query: 241 LKR 243 LK+ Sbjct: 235 LKK 237 >gi|217034556|ref|ZP_03439965.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10] gi|216942976|gb|EEC22459.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10] Length = 271 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|148654432|ref|YP_001274637.1| dimethyladenosine transferase [Roseiflexus sp. RS-1] gi|148566542|gb|ABQ88687.1| dimethyladenosine transferase [Roseiflexus sp. RS-1] Length = 297 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 143/307 (46%), Gaps = 45/307 (14%) Query: 1 MTMNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT++N S ++ L + P + MGQNFL+D L I ++ TV+E+G G Sbjct: 1 MTVSNPYLSRARVRAALHALGLRPSRSMGQNFLIDGAALATIVTAAALTADDTVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113 G LT L+ AR V+ +E D++ L+ PN L IIQ D L++ Sbjct: 61 LGVLTWELVQ-RARTVVAVELDRRLAERLRTEFRTFPN-LAIIQGDVLRLPPATILAEHD 118 Query: 114 ----NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + + P +++ANLPY I + L +++S P + +L Q+EV RI A+ Sbjct: 119 PDAASGARPYKVVANLPYAITSAALRHFLSTPLRPTL---MVVLVQQEVAARICARA--- 172 Query: 170 HYGRLSVLTGW---RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESL 222 G LSVL + ++ + FFP+P+V S+V+ ++P P + E+L Sbjct: 173 --GDLSVLAHAVQIYAEPEIVARVPASSFFPAPEVDSSVLRL--RIHPQPAVVSDQPEAL 228 Query: 223 KKITQEAFGKRRKTLRQSLKRLGGE-------------NLLHQAGIETNLRAENLSIEDF 269 ++ + F RK L +L GG + L AGI+ RAE +++E++ Sbjct: 229 LRLIKAGFLHPRKQLGNALP--GGMAAMGMKIDRQRVLDALAAAGIDPTRRAETVTLEEW 286 Query: 270 CRITNIL 276 + L Sbjct: 287 GAVYRAL 293 >gi|91091694|ref|XP_972612.1| PREDICTED: similar to dimethyladenosine transferase [Tribolium castaneum] gi|270001061|gb|EEZ97508.1| hypothetical protein TcasGA2_TC011352 [Tribolium castaneum] Length = 306 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 24/254 (9%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++ + + + TV+EIG G GNLT LL ++V+ E D + Sbjct: 25 KSFGQHILKNPLVITSMLDKAALKPSDTVLEIGPGTGNLTLKLLE-SVKQVVACEIDHRL 83 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ P ++L+I+ D LK + FF++ +AN+PY I + L+F + Sbjct: 84 VAELQKRVQNSPFKSKLQILIGDVLKTELP-FFSVC-----VANIPYQISSPLVFKLL-- 135 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF+ L+FQKE +R+ A Y RLS+ T + M+ + + F P PK Sbjct: 136 -LHRPFFRCAVLMFQKEFADRLVAVPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPK 194 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S V+ P P P +T+ AF ++ KTL + ++ + A +E N + Sbjct: 195 VESAVVRIEPRNPPPPISYTEWDGLTRIAFSRKNKTLGAAFRQ-----SVVLATLEKNYK 249 Query: 261 AENLSIEDFCRITN 274 + FC + N Sbjct: 250 S-------FCSVNN 256 >gi|303388914|ref|XP_003072690.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC 50506] gi|303301832|gb|ADM11330.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC 50506] Length = 277 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 35/269 (13%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L ++ ++ I E + TV+EIG G GNLT LL A+KVI E D + Sbjct: 8 KQHGQHILKNMGVIDTIIERAKIKPTDTVLEIGGGTGNLTMKLLQ-KAKKVICYEIDPRL 66 Query: 83 FPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L + P + ++ DALK DF F I+NLPY I + +F + Sbjct: 67 AAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCISNLPYQISSPFMFKLLK 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D ++ ++FQ+E +R+ A+ S Y RLSV + + +S + F P P Sbjct: 121 YD-----FKCAFIMFQREFSDRLVAKPGSSEYCRLSVGAQMLAQVDHVLKVSKNSFVPPP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RLGG------- 246 K+ S+ + P + P LE + + F ++ KTL+ + + ++ G Sbjct: 176 KIESSFVRIEPRIPRPPIDLEEFDRFLKICFLRKNKTLKANFRNSSLVSKVKGNPSFENT 235 Query: 247 ------ENLLHQAGIETNLRAENLSIEDF 269 E +L +A ++ RA +SI+DF Sbjct: 236 TPEEVFEKVLSRAELD-GARAAKMSIDDF 263 >gi|219115097|ref|XP_002178344.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410079|gb|EEC50009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 322 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 12/225 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P +GQ+FL + ++ I + +G V+EIG G GN+T +L A+KV+ +E Sbjct: 37 ISPNTSLGQHFLKNPAVISSIIDKAGLKATDVVLEIGPGTGNMTVPMLQ-RAKKVVALEF 95 Query: 79 DQQFF-PILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +LK ++L++IQ DA+K + FF+ +IANLPY I ++++F Sbjct: 96 DSRMVREVLKRTEGTDLAHKLQVIQGDAMKTAWP-FFDC-----MIANLPYQISSQVVFK 149 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + L+FQ+E R++A+ Y RLSV T K + + F Sbjct: 150 LLSHR---PMFRCAVLMFQEEFALRLSARPGEALYCRLSVNTQLLAKVDQLLKVGKQNFR 206 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 P PKV S V+ P P + + F ++ KTLR L Sbjct: 207 PPPKVESRVVRIELKNPPPPVNFTEWDGMIRLLFNRKNKTLRSVL 251 >gi|227832678|ref|YP_002834385.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC 700975] gi|262182836|ref|ZP_06042257.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC 700975] gi|227453694|gb|ACP32447.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC 700975] Length = 280 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNFL D N +++I ++ V+E+G G + L Sbjct: 12 IRELAAELDVTPTKKLGQNFLHDPNTIRRIVAAADLSPEDRVVEVGPG-LGSLTLGLLGE 70 Query: 70 ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V +E D + L D ++ +RL +++ DAL V+ + + P ++ANL Sbjct: 71 VEHVTAVEIDPRLAGKLPDTVAARAADFADRLSVVEKDALTVEAGE---LGEPTALVANL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + +P L ++ Q EV ER+ A S YG SV + Sbjct: 128 PYNVAVPVLLHLL--EVYPSIRRVLVMV-QLEVAERLAAGPGSKVYGIPSVKASFYGPVR 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244 I +VF+P+PK+ S ++ I P L L + AF +RRKTLR +L Sbjct: 185 QAGTIGKNVFWPAPKIESGLVR-IDCTRPFDEALRPRLFALIDAAFAQRRKTLRAALAGF 243 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E L A I+ LR E L +EDF R+ + Sbjct: 244 YGSAAAAEEALRTADIDPRLRGEKLGVEDFVRLAEV 279 >gi|148242414|ref|YP_001227571.1| dimethyladenosine transferase [Synechococcus sp. RCC307] gi|166221711|sp|A5GTK9|RSMA_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147850724|emb|CAK28218.1| Dimethyladenosine transferase [Synechococcus sp. RCC307] Length = 274 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 27/265 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ++L D ++L++I ++ V+E+G G G LT LL A V +E D+ Sbjct: 9 RKRFGQHWLKDESVLQRIVAAAALQPDDHVLEVGPGRGALTAQLLASPAASVQAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 L+ + P R ++ D L + D E+ P +++AN+PYNI LL Sbjct: 69 LVAGLQQRFAAEP-RFQLQSGDVLALPQLGDGER-----RPTKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P P ++ L LL Q+EV RI+A+ + LSV + + P F Sbjct: 123 VGRLDRPVEPPYQRLVLLVQQEVARRISARAGQSSFSALSVRMQLLAHCRSVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE-------AFGKRRKTLRQSLKR----L 244 P PKV S VI L+P+P + + ++ AF RRK +R +L + Sbjct: 183 QPPPKVQSEVI----SLDPLPADQRPPQAVAKQVEHLLRLAFSARRKMVRNTLASAAPAV 238 Query: 245 GGENLLHQAGIETNLRAENLSIEDF 269 G E L AG+ R + ++ + + Sbjct: 239 GLEVWLADAGLTPQQRPQEIAAQQW 263 >gi|327311782|ref|YP_004338679.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20] gi|326948261|gb|AEA13367.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20] Length = 228 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 33/225 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 ++ +GQ+ L D + +AE L +G V+E+GAG G LT + L A KV IE D Sbjct: 2 RRRLGQHMLRD----RSVAEYMAGLVPEGSVVLEVGAGTGTLT-LELAKRASKVYAIELD 56 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNW 137 + L S++ P +E+I DAL++++ FF +N+PY I + LL Sbjct: 57 RALAAYL---SARAPPNVEVIVGDALRLEWPPADFFA--------SNIPYYISSPLLLR- 104 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ P ++ Q+EV ERI+A+ S +YGRL+V ++ + P F P Sbjct: 105 LAERRMP-----AVVMLQREVAERISAEPGSENYGRLTVAVRCNYDVEVLRTVPPRAFSP 159 Query: 198 SPKVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQ 239 P+V S V+ L P P C++ S +K T F +RRK R+ Sbjct: 160 PPQVYSAVV----RLTPRPPCVDDFKSFEKFTAMLFSQRRKLARK 200 >gi|297380589|gb|ADI35476.1| dimethyladenosine transferase [Helicobacter pylori v225d] Length = 271 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVRFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|261838704|gb|ACX98470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori 51] Length = 271 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGSATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|325179921|emb|CCA14323.1| dimethyladenosine transferase putative [Albugo laibachii Nc14] Length = 311 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 12/220 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P +GQ+FL + I +I + +E+G G GNLT +L A+KVI +E D Sbjct: 29 PNTSIGQHFLKNPMIAAQIVSKAALRSTDVCLEVGPGTGNLTMKILN-QAKKVIAVEYDL 87 Query: 81 QFFP-ILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + I K + +++H L++I D ++V FF++ IANLPY I + +F + Sbjct: 88 RMIAEIQKRVQNTEHAKHLQVIHGDVIRVQLP-FFDVC-----IANLPYQISSPFVFKLL 141 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + ++FQ+E +R++A+ Y RLSV T K + + + F P Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDQLYCRLSVNTQLLAKVDQLIKVGKNNFRPP 198 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 PKV S V+ P P P + + F ++ KTLR Sbjct: 199 PKVESRVVRIEPRNPPPPVNFVEWDGMIKILFNRKNKTLR 238 >gi|167042535|gb|ABZ07259.1| putative ribosomal RNA adenine dimethylase [uncultured marine microorganism HF4000_ANIW133F6] gi|167043080|gb|ABZ07791.1| putative ribosomal RNA adenine dimethylase [uncultured marine microorganism HF4000_ANIW141C7] Length = 290 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 126/272 (46%), Gaps = 27/272 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITV----IEIGAGPGNLTQMLLTLGARKVI 74 I P + +GQ+FLLD ++ + E +G IT +EIG GPG+LT LL GAR V Sbjct: 17 IRPDRALGQHFLLDEAVIARAVELAGVDSPITAASHCLEIGPGPGSLTLELLRTGAR-VT 75 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +E D + L + RL + Q DAL+VD+ +IS I++NLP+ I + +L Sbjct: 76 ALEVDAEAIAHLGRVFGTADGRLSVQQIDALQVDWPT--DIS---HIVSNLPFQISSPVL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 P + LL Q E ER+ + + G L + + +SP Sbjct: 131 DRIQKHHARNPL-SGIVLLVQDEFAERMVMKGGNASRGPLGHSLWLQFDIELDLRVSPSA 189 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK----RLGGEN 248 F P+P+VTS ++ P ++ + + F RR+ LR +LK RL N Sbjct: 190 FSPAPRVTSRLVALKPATRENTDQIDERLFRLVISSCFANRRRKLRTTLKRPPRRLNRIN 249 Query: 249 LLHQA----GIET------NLRAENLSIEDFC 270 H+ GIE +LR ENL+ ED+ Sbjct: 250 GWHKERWTRGIERLEPALLDLRPENLTSEDWA 281 >gi|239917075|ref|YP_002956633.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665] gi|281414463|ref|ZP_06246205.1| dimethyladenosine transferase [Micrococcus luteus NCTC 2665] gi|239838282|gb|ACS30079.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665] Length = 307 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 34/288 (11%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I + + P K GQNF++D N +++I +++ V+EIG G G+LT LL Sbjct: 19 VRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVSADEHVLEIGPGLGSLTLGLLDAA 78 Query: 70 ARKVIVIEKD-----------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--- 115 A V +E D +F P +D L ++ DA+ + + + Sbjct: 79 A-AVTAVEIDPVTAARLPRTAAEFRPGAEDA-------LAVLHADAMTLSEQALAEVRPA 130 Query: 116 ---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 SP ++ANLPYN+ +L + ++ P L ++ Q+EV +R+ A S YG Sbjct: 131 AAAGSPTALVANLPYNVAVPVLLHALA--VLPGLRHGL-VMVQEEVADRLAAGPGSKVYG 187 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFG 231 S W I VF+P+P++ S ++ F P + + AF Sbjct: 188 VPSAKAAWYADVRKAGTIGTQVFWPAPRIHSGLVAFTRREPPAGSASRREVFAVVDAAFA 247 Query: 232 KRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 +RRKTLR +L G E+ L AG++ R E L I F RI Sbjct: 248 QRRKTLRAALASWAGSPPAAEDALVAAGVDPRARGEALDIAAFARIAE 295 >gi|332674195|gb|AEE71012.1| dimethyladenosine transferase [Helicobacter pylori 83] Length = 271 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + ++EIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--VQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P+ F Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFCAKDSQ---NALSVLTQAIGNATLLFDVPPNAFS 166 Query: 197 PSPKVTSTVIHFI---------PHLNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|260889782|ref|ZP_05901045.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254] gi|260860388|gb|EEX74888.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254] Length = 282 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 19/266 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D N+ +I + + + V+EIG G G LT+ L+ ++ + E D Sbjct: 23 KKNNGQNFLNDSNLSDEILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFLTAFEIDDD 81 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P L + ++ ++I D ++ D +KFF ++++AN+PY I + ++ + Sbjct: 82 LIPFL-NKKFENKQNFKLIHQDFMEADLKKFFEDKKNVKVVANIPYYITSPIINKLLE-- 138 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT---GWRTKATMMFDISPHVFFPS 198 + + + L+ QKEV ERI +Q PH +S+LT + +A +F + F P Sbjct: 139 -YRENIDEIYLMVQKEVAERIASQ---PHSKNMSLLTHAVQFYAEAEYLFTVPKEKFDPV 194 Query: 199 PKVTSTVIH---FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LL 250 PKV S + E K +EAF +RK++ +L +LG L Sbjct: 195 PKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLTKLGFSKDVVGTAL 254 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 + G R E S+++F IL Sbjct: 255 EKVGKTRLARTEEFSVQEFIDFIEIL 280 >gi|316975090|gb|EFV58549.1| dimethyladenosine transferase [Trichinella spiralis] Length = 296 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 122/263 (46%), Gaps = 18/263 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K H K+ +S +I K GQ+ L + I+ I E + G T+ E+G G GNLT + Sbjct: 7 KRHIGKSNISRQEIPFKTTYGQHILKNPLIVNSIIEKAAIKQGDTIFEVGPGTGNLTVVA 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + R + K Q S ++LEI+ DALKV + FF++ +ANL Sbjct: 67 CEIDYRLAAELTKRVQ--------GSALQSKLEILPGDALKVQWP-FFDVC-----VANL 112 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 P+ I + +F + PPF L+FQKE ER+ A+ Y RLSV K Sbjct: 113 PFQISSPFVFRLLLHR--PPF-RCAVLMFQKEFAERLVAKPGDRLYCRLSVNVQLLAKVN 169 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + + + F P PKV +TV+ F + P P + + + AF ++ K+L + K Sbjct: 170 AVIRVGRNNFRPPPKVDATVVRFELKMPPPPIDFQEWDGLLRIAFLRKNKSLSSAFKFKK 229 Query: 246 GENLLHQAGIETNLRAENLSIED 268 ++L + + N+ IED Sbjct: 230 VLDMLDK-NYRVHCSVNNIKIED 251 >gi|242063872|ref|XP_002453225.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor] gi|241933056|gb|EES06201.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor] Length = 261 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 18/247 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL GA V +EKD Sbjct: 1 VPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKD 59 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPIRIIANLPYNIG 130 + ++KD +L++I++D K EK+ ++++NLP+N+ Sbjct: 60 KHMATLVKD-RFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVS 118 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFD 189 + ++ + + + L+ Q E R+ A P Y ++V + +K F Sbjct: 119 SEVVKLLLPMGDV---FSVVVLMLQDETAVRLADASIQIPEYRPINVFVNFYSKPEYKFR 175 Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + FFP PKV VI F + + P +S + AF +RK LR+SL+ L Sbjct: 176 VDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCS 235 Query: 247 ENLLHQA 253 + + A Sbjct: 236 SSEIEAA 242 >gi|57525891|ref|NP_001003556.1| probable dimethyladenosine transferase [Danio rerio] gi|50417873|gb|AAH78286.1| Zgc:101122 [Danio rerio] Length = 306 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 125/262 (47%), Gaps = 17/262 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV+ E D + Sbjct: 27 IGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDARLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P N+L+I+ D LK + FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLTKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ P P P + + + AF ++ K L + K E LL + + + Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKMLSAAFKSAAVEKLLEK-NYKIHCSVH 255 Query: 263 NLSI-EDF---CRITNILTDNQ 280 N+ I EDF +I +IL +++ Sbjct: 256 NIEIPEDFNIAPKIESILQESK 277 >gi|254167515|ref|ZP_04874367.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] gi|197623778|gb|EDY36341.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] Length = 238 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 26/251 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL++ I I + + V+EIG G G LT LL +V IE D+ Sbjct: 5 SQNFLINPKIADYIVKEAEIKPDDIVLEIGPGKGILTDKLLEKC--EVYAIEIDKTLCEY 62 Query: 86 LKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L I + RL +I DALKVDF KF +I+AN+PY+I + LLF + + Sbjct: 63 LSIIFQDYIKNGRLHLICGDALKVDFPKFN------KIVANIPYHISSPLLFKILEYE-- 114 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 +E L+ Q E ER+ A+ S YGRLSV+ + +A ++ + F P P+V S Sbjct: 115 ---FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFKPVPRVDS 171 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 ++ I + + L + ++ F +RRK +R N+L + + R E Sbjct: 172 AIVK-ITKKDRFCYDKDKLNEFVRKLFEQRRKKIR---------NILEEVPY-GDSRVEE 220 Query: 264 LSIEDFCRITN 274 LS E+ C + Sbjct: 221 LSPEEICEVVQ 231 >gi|317182633|dbj|BAJ60417.1| dimethyladenosine transferase [Helicobacter pylori F57] Length = 271 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + ++EIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|332376340|gb|AEE63310.1| unknown [Dendroctonus ponderosae] Length = 306 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 12/223 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++ + E S TV+EIG G GN+T LL A+KV+ E D + Sbjct: 25 KQFGQHILKNPMVITSMVEKSAIRSTDTVLEIGPGTGNMTVRLLE-KAKKVVACEIDTRL 83 Query: 83 FPIL-KDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L K + H ++LEI+ D LK + FFNI +AN+PY I + L+F + Sbjct: 84 VAELQKRVQGTHLQSKLEILVGDVLKRELP-FFNIC-----VANIPYQISSPLVFKLL-- 135 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF+ ++FQ+E +R+ A+ Y RLSV T + M+ + + F P PK Sbjct: 136 -LHRPFFRCAVIMFQREFAQRLVAKPGDKLYCRLSVNTQLLARVDMLMKVGKNNFRPPPK 194 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S+V+ P P P +T+ AF ++ +TL + K+ Sbjct: 195 VESSVVRIEPRNPPPPIPYIEWDGLTRIAFTRKNRTLGSAFKQ 237 >gi|193216436|ref|YP_001999678.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1] gi|226732598|sp|B3PLS2|RSMA_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|193001759|gb|ACF06974.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1] Length = 258 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 16/267 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++I KK GQNFL++ I K I + + +D VIEIG G G LT ++ L ++++I E Sbjct: 2 EVIAKKRFGQNFLINKAIQKAIVDVA-CVDDENVIEIGPGLGALTDLIKEL-SKELIAYE 59 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D F L + +Q+ N + I +D L F++ +I N+PYNI + +LF Sbjct: 60 IDNDLFKKLL-VENQNSN-VRFINEDFLNATFDE----KKEWVVIGNIPYNITSEILFKL 113 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + TL+ Q EV R+ A + Y +L+V + F + F P Sbjct: 114 IENHS---ILKKATLMVQDEVANRLVAMPKTKEYSKLTVSVNFVGNVKKHFVVKASNFNP 170 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL----KRLGGENLLHQA 253 +PKV S +I I +P L+ + ++ F +RK L +L + + Q Sbjct: 171 APKVDSAIIT-IDFYKSLPYNLKKVLAFIKQIFAFKRKMLINNLVPQWPKADVIWAIEQI 229 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE LS+++ ++ IL +++ Sbjct: 230 GHKQTTRAEELSLQEIMKLYEILVNSK 256 >gi|156937848|ref|YP_001435644.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I] gi|156566832|gb|ABU82237.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I] Length = 243 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 21/236 (8%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K L+ I P K MGQNF ++ I++ S G VIEIGAG G LT L + + Sbjct: 6 KAKLAELGIRPSKKMGQNFTVNPKIIEFFLSEVPS--GEVVIEIGAGLGALTAPLSKV-S 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +KVI IEKD + LK ++ ++ +E++ DAL+++ + +P+ ++ +LPY+I Sbjct: 63 KKVIAIEKDLRLCNYLKSLNLEN---VEVVCGDALELELD------APV-VVGSLPYSIS 112 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 LL + W L QKEV ER+ A+ + YGRL+VL +A + Sbjct: 113 GPLLAKLFTEGRW----NKGVFLLQKEVAERLVAEPGTKEYGRLTVLASLCCEARLGPVW 168 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 P F+P P+V S + I + +P + + F +R K R+ L G Sbjct: 169 GPESFYPKPEVLSRHVILIKKRS-VP---KEFSEFLACVFSQRNKKARKVLPSCGA 220 >gi|317010201|gb|ADU80781.1| dimethyladenosine transferase [Helicobacter pylori India7] Length = 271 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 114/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLVQVLFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|152989813|ref|YP_001355535.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2] gi|151421674|dbj|BAF69178.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2] Length = 278 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 26/276 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ KK GQNFL D +++ KI +S + D + ++EIG G G+LTQ LL + VI E Sbjct: 2 EVAAKKKFGQNFLKDKSVVNKIIQSMPNTDNV-IVEIGPGLGDLTQELLK--KKDVIAFE 58 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKV------DFEKFFNISSPIRIIANLPYNIGT 131 D +L++ S E ++ ALK+ D K + ++ANLPY + T Sbjct: 59 IDPDLCTLLQEKFS------ESLEKRALKLHCGDVLDRWKQHLVDKEYDLVANLPYYVAT 112 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + P +++ ++ QKEV ++ A+ + LSVL G + + + Sbjct: 113 NIVLRALRD----PNCKNILVMLQKEVADKFCAKPGQREFSALSVLAGSAGEVQRVTVVK 168 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P+ F P PKV S VI + + E+ KI AF + RKTL ++L + + LL Sbjct: 169 PNSFTPPPKVDSAVILIKKNRSIDDDNFETFLKI---AFRQPRKTLLKNLAQSYPKELLQ 225 Query: 252 Q----AGIETNLRAENLSIEDFCRITNILTDNQDIA 283 Q G+ +N+R S + R+ +L + D A Sbjct: 226 QLFQTLGVASNIRPHEASTSIYHRLYEMLKEKIDGA 261 >gi|171186169|ref|YP_001795088.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta] gi|170935381|gb|ACB40642.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta] Length = 227 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 36/243 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ Q+FL D + + IAE G+ V+E+G G G LT + L AR V IE D++ Sbjct: 3 RRRWSQHFLRDPSAARYIAELVPP--GLDVLEVGPGRGALT-IPLAERARTVYAIEVDRR 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139 +L+ + P + +I+ DAL+V++ + +F ++N+PY+I + LL ++ Sbjct: 60 LAELLRKTA---PPNVVVIEGDALEVEWPRADYF--------VSNIPYSITSPLLMK-LA 107 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + Q+EV ER+ A +YGRL+V + ++ + P VF P P Sbjct: 108 RHRMP-----AVVTVQREVAERLAAAPGGENYGRLTVAVQCHYEVEVLRTLPPRVFQPPP 162 Query: 200 KVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQA 253 +V S V+ L P P C+E ++ T F RRKTLR RLG G+ ++Q Sbjct: 163 RVYSAVV----RLTPRPPCVEDFDGFQRFTAWLFSARRKTLR----RLGLGEGDRRVYQL 214 Query: 254 GIE 256 +E Sbjct: 215 SLE 217 >gi|307107026|gb|EFN55270.1| hypothetical protein CHLNCDRAFT_23464 [Chlorella variabilis] Length = 312 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +++ I + +G V+EIG G GNLT LL A+KVI +E D + Sbjct: 31 KSKGQHILKNPLVVQSIVDKAGIKSTDVVLEIGPGTGNLTMKLLER-AKKVIAVELDPRM 89 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L P N+L+II D +KV +F+I +AN+PY I + L F ++ Sbjct: 90 VLELTRRVQGTPYQNQLQIIHGDVMKVQLP-YFDIC-----VANIPYQISSPLTFKLLAH 143 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + + +++Q E R+ A+ P Y RL+V T + + + + F P PK Sbjct: 144 R---PCFRAAVIMYQHEFAMRLVAKPGDPAYSRLAVNTQLLARVNHLLKVGRNNFRPPPK 200 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+V+ P P L + + FG++ KTL Sbjct: 201 VDSSVVRIEPRNPAPPVNLLEWDGLVRLCFGRKNKTL 237 >gi|281204745|gb|EFA78940.1| dimethyladenosine transferase [Polysphondylium pallidum PN500] Length = 306 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 12/198 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ++ H++ K GQ+ L + I+ I + S TV+EIG G GNLT LL Sbjct: 22 QKVVRHHEFQMNKTFGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLE-SC 80 Query: 71 RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L+ + P + LEII D LKVD +F++ +AN+PY Sbjct: 81 KKVIAVEVDPRMAAELQKRVATTPYASHLEIILGDFLKVDLP-YFDVC-----VANVPYQ 134 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ P + + L+FQKE R+ A Y RLSV T +K T + Sbjct: 135 ISSPLTFKLLA---HRPVFRTAVLMFQKEFALRLAASPGDSLYCRLSVNTQLLSKVTHLM 191 Query: 189 DISPHVFFPSPKVTSTVI 206 + + F P PKV S V+ Sbjct: 192 KVGKNNFLPPPKVESAVV 209 >gi|169628224|ref|YP_001701873.1| dimethyladenosine transferase [Mycobacterium abscessus ATCC 19977] gi|169240191|emb|CAM61219.1| Probable dimethyladenosine transferase (16S rRNA dimethylase) [Mycobacterium abscessus] Length = 301 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 127/272 (46%), Gaps = 33/272 (12%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79 P K +GQNF+ D N +++I +SG G VIE+G G G+LT LL GA V +E D Sbjct: 36 PTKTLGQNFVHDANTIRRIVSASGVGKGDHVIEVGPGLGSLTLGLLDKGA-AVTAVEVDP 94 Query: 80 ---QQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGT-- 131 ++ +K+ S NR +I D L + D + P ++ANLPYN+ Sbjct: 95 VLARRLPTTIKEHSHSEFNRFSVIHQDVLNLTPADIQ-----GEPTAMVANLPYNVAVPA 149 Query: 132 --RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 R+L + S T + ++ Q EV +R+TA+ S YG SV + K + Sbjct: 150 LLRILTEFDSVKT-------ILVMVQSEVADRLTAEPGSRIYGVPSVKVRYFGKVKRLGT 202 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLG 245 +SP VF+P P+V S ++ H + +K + +F +RRKT R + Sbjct: 203 VSPAVFWPIPRVYSGLVRIDRHADAAWPSDAGFRKELFDLIDISFAQRRKTSRNAFAEWA 262 Query: 246 GEN-----LLHQAGIETNLRAENLSIEDFCRI 272 G L A I+ R E L + DF R+ Sbjct: 263 GSGDESARRLLAASIDPARRGETLDVADFARL 294 >gi|15646040|ref|NP_208222.1| dimethyladenosine transferase [Helicobacter pylori 26695] gi|27151553|sp|O25972|RSMA_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2314603|gb|AAD08470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase (ksgA) [Helicobacter pylori 26695] Length = 271 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + ++EIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 HLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFEMLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|219849174|ref|YP_002463607.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485] gi|219543433|gb|ACL25171.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485] Length = 290 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 29/289 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ L + P + MGQNFLLD ++L I + + TVIE+G G G LT LL Sbjct: 10 IRAALRALNLRPTRGMGQNFLLDGSVLATIVAEAALVPADTVIEVGPGLGVLTWELLPRA 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLP 126 R VI +E D++ L S N L ++Q D L + D + P +++AN+P Sbjct: 70 GR-VICVELDRRLADRLAAEFSGRSN-LHLVQGDVLTIAPADLLARAAATPPYKLVANIP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I LL +++ A T PP + LL Q EV +RI A Y L+ + + ++ Sbjct: 128 YAITAPLLRHFLEA-TPPP--DLSVLLVQWEVAQRICAGPGD--YSVLAHAIQFYAEPSI 182 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243 + + FFP+P V S ++ L P P + L ++ + F RK L +L Sbjct: 183 VAHVPASSFFPAPAVDSAILRLQRRLQP-PVTVPDVNMLFRLIKAGFLHARKQLGNALP- 240 Query: 244 LGG-------------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 GG LH+ GI+ RAE +++ ++ + L+++ Sbjct: 241 -GGLAALGVTIPREQIMTALHKIGIDPQRRAETVTLAEWANLLAALSES 288 >gi|255636797|gb|ACU18732.1| unknown [Glycine max] Length = 308 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++ I E +G ++EIG G GNLT+ LL G +KVI IE D + Sbjct: 30 KSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAG-KKVIAIEIDPRM 88 Query: 83 FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + H NRL +IQ D LK + +F+I +AN+PY I + L F + Sbjct: 89 VLELQRRFQGTPHSNRLTVIQGDVLKTELP-YFDIC-----VANIPYQISSPLTFKLLKH 142 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + P + + ++FQ+E R+ AQ Y RL+V T + + + + F P PK Sbjct: 143 E---PAFRAAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFHLLKVGRNNFRPPPK 199 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+V+ P I + + F ++ KTL Sbjct: 200 VDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTL 236 >gi|229142847|ref|ZP_04271290.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24] gi|228640610|gb|EEK96997.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24] Length = 220 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + FN + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYAN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214 >gi|240047162|ref|YP_002960550.1| dimethyladenosine transferase [Mycoplasma conjunctivae HRC/581] gi|239984734|emb|CAT04708.1| Dimethyladenosine transferase [Mycoplasma conjunctivae] Length = 260 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 14/263 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + KK GQNFL D NI+KKI +S + VIEIG G G LTQ ++ + E Sbjct: 3 KFVFKKKYGQNFLKDENIVKKIV-NSVDITNKEVIEIGPGGGALTQEIVK-KCSFLRAYE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D LK S P +EII +D L + + F S+ ++ANLPY I + ++F Sbjct: 61 IDADLIENLKKKFSSSP--VEIINEDFLDTNLDFF---STKQIVLANLPYYITSNIIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 +S + + ++ Q EV +RI A+ N+ Y +LS+ + + I P F P Sbjct: 116 LSHINK---FSEIVIMVQDEVADRIVAKVNTKDYSKLSLSCQYIANVEKILKIPPSAFIP 172 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQA 253 P V S V+ F N + +++F +RKTL + ++R + + Sbjct: 173 QPSVNSAVVVFRVKENIDQEKFNNFLNFVKKSFAMKRKTLFNNFLTFIERDKIKQIYSLF 232 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 ++ N+R + +S++ + I L Sbjct: 233 KLDFNVRPQQISLDLYNEIFEFL 255 >gi|317181111|dbj|BAJ58897.1| dimethyladenosine transferase [Helicobacter pylori F32] Length = 271 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 NLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|195503410|ref|XP_002098640.1| GE23825 [Drosophila yakuba] gi|194184741|gb|EDW98352.1| GE23825 [Drosophila yakuba] Length = 306 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 18/271 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITSMLEKAALRATDVVLEIGPGTGNMTVPMLE-RAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+++ D LK + FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E ER+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGI 255 P PKV S+V+ P P P +T+ AF ++ KTL + K +L + + Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL 250 Query: 256 ETNLRAENLSIEDFCRITN---ILTDNQDIA 283 +LR E +ED ++ N + ++QD+A Sbjct: 251 YRSLRNE--PVEDDFKMQNKVIAILEDQDMA 279 >gi|301110310|ref|XP_002904235.1| dimethyladenosine transferase [Phytophthora infestans T30-4] gi|262096361|gb|EEY54413.1| dimethyladenosine transferase [Phytophthora infestans T30-4] Length = 312 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 12/219 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P +GQ+FL + I+ +I + +E+G G GNLT LL A++V+ +E D Sbjct: 29 PNTNLGQHFLKNPMIVTQIVAKAAIRGTDVCLEVGPGTGNLTVKLLE-QAKRVVAVEFDP 87 Query: 81 QFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + L+ ++H N L+II D ++V FF++ +ANLPY I + +F + Sbjct: 88 RMVAELQKRIQHTEHINHLQIIHGDVMRVQLP-FFDVC-----VANLPYQISSPFVFKLL 141 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + ++FQ+E +R++A+ Y RLSV T K + + + F P Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDELYCRLSVNTQLLAKVDQLLKVGRNNFRPP 198 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 PKV S V+ P P P + + F ++ KTL Sbjct: 199 PKVESRVVRIEPRNPPPPVNFTEWDGMIKIIFNRKNKTL 237 >gi|260815743|ref|XP_002602632.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae] gi|229287943|gb|EEN58644.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 22/285 (7%) Query: 6 KSHSLKTILSHYKIIPK-----KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 K S KT +H ++ + K GQ+ L + ++ + E + TV+EIG G GN Sbjct: 3 KVKSAKTSRTHQEVQKQGIGFNKQFGQHILKNPLVVDSMVEKAALRPTDTVLEIGPGTGN 62 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSP 118 LT M + +KVI E D + L+ P ++L+++ DALK D FF+I Sbjct: 63 LT-MKMIDRVKKVIACEIDPRLVAELQKRVQGTPSAHKLQMMVGDALKTDLP-FFDIC-- 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +AN+PY I + L+F + PF+ L+FQ+E +R+ A Y RLS+ Sbjct: 119 ---VANIPYQISSPLVFKLL---LHRPFFRCAILMFQREFAQRLVAPPGDKLYCRLSLNV 172 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + + I + F P PKV S+V+ P P P + + + AF ++ KTL Sbjct: 173 QLLARVDHLMKIGRNNFRPPPKVESSVVRLEPKNPPPPINFQEWDGMVRIAFLRKNKTLG 232 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSI-EDF---CRITNILTDN 279 + K +LL + + N+ I EDF ++T+IL N Sbjct: 233 AAFKNSKVLSLL-EKNYRIHCSFNNIPISEDFDMKQKVTDILETN 276 >gi|259089147|ref|NP_001158611.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss] gi|225705252|gb|ACO08472.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 12/230 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV+ E D + Sbjct: 27 LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDGRLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L+I+ D LK + FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ P P P + + + AF ++ KTL K E LL + Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLEK 246 >gi|307152257|ref|YP_003887641.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822] gi|306982485|gb|ADN14366.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822] Length = 279 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 129/277 (46%), Gaps = 23/277 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L +I +++ + ++EIG G G LT+ LL V+ +E D+ Sbjct: 5 PRKRFAQHWLRSEQALSEIIQAAQLKNTDRLLEIGPGTGILTRRLLP-EVESVVAVEIDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKF--FNISSPIRIIANLPYNIGT 131 L Q N L ++Q D L +D F KF FN +++AN+PYNI Sbjct: 64 DLCKKLVKSLGQLDNFL-LLQGDILSLDLTTELAPFPKFTPFN-----KVVANIPYNITG 117 Query: 132 RLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 +L + + P +E + LL QKEV ER+TA+ + Y LS+ + + + Sbjct: 118 PILEYLLGTISEPGHQKYELIVLLMQKEVAERLTAKPGTKAYSALSIRVQYLAACEWICE 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL---- 244 + F+P PKV S V+ P P L + + F RRK L +LK + Sbjct: 178 VPARAFYPPPKVDSAVVRLRPQRVARPANNPRQLDTLVKLGFANRRKMLHNNLKGIIELE 237 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LL + I RAE LS+E + ++N LT N + Sbjct: 238 RLTELLEKLEINPQCRAEELSLEQWIELSNQLTINTN 274 >gi|148233697|ref|NP_001089685.1| DIM1 dimethyladenosine transferase 1-like [Xenopus laevis] gi|77748206|gb|AAI06333.1| MGC130862 protein [Xenopus laevis] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 124/261 (47%), Gaps = 19/261 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL +++VI E D + Sbjct: 27 LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KSKRVIACELDTRLVA 85 Query: 85 ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ S ++L+++ D LK D FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260 S+V+ P P P + + + AF ++ KTL S K + LL + I +L Sbjct: 197 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAASFKSTAVQELLEKNYRIHCSLHN 256 Query: 261 ---AENLSIEDFCRITNILTD 278 EN SI + +I ILT+ Sbjct: 257 ISVPENFSIAE--KIEGILTE 275 >gi|289450164|ref|YP_003475145.1| putative dimethyladenosine transferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184711|gb|ADC91136.1| putative dimethyladenosine transferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 300 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 27/289 (9%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 +N LS Y++ P +GQNF+ D +L+ + + EIGAG GNLT Sbjct: 7 SNDRKDFANYLSGYRLRPNHNLGQNFIYDKGLLQAMVAEMRLPPKCEIWEIGAGTGNLTA 66 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN------ISS 117 +L R V IE D L+D + +P ++ +I DALK+ N I Sbjct: 67 VLAEQFPR-VTAIEIDPALARPLQDRFTSNP-KVRLIFGDALKLTAADLANSEEENSIID 124 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESL--TLLFQKEVGERITAQKNSPHYGRLS 175 I ++ NLPY I T+L+ +++ F +L + L Q+E +RI S +YG L+ Sbjct: 125 NIAVVGNLPYYISTKLIEHFLLH-----FHTALQYSFLVQQEFVDRILTPAGSKNYGPLN 179 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKR 233 +L T ++ F P P V+ST+IH IP N + AF +R Sbjct: 180 ILLDNFTTIRKGMTLAATDFMPQPSVSSTLIHIIPQPNSQIDKSTWPDYRNFLHLAFAQR 239 Query: 234 RKTLRQSLKRLGGE----------NLLHQAGIETNLRAENLSIEDFCRI 272 RKT+ + RL E L G++ +R E ++ E++ + Sbjct: 240 RKTMHNTYARLQREYPLLNNTNDLEWLAGVGLKLQIRPEAITPENWLTL 288 >gi|325473126|gb|EGC76322.1| dimethyladenosine transferase [Treponema denticola F0402] Length = 293 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 32/286 (11%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAE---SSGSLD-GITVIEIGAGPGNLTQML 65 LK++L +K GQNFL+D KK E S +LD G V E+G G G +T +L Sbjct: 18 LKSLLETLGFAMQKKFGQNFLID----KKTRENLISFLTLDKGTRVWEVGPGLGAMTYLL 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIAN 124 L G + E D+ F +LK ++ + +++ D K P N Sbjct: 74 LEKGVH-LTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYLREHGKPDVFFGN 132 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI + L+ + + A ++++ QKE ERITA+ + +Y SVL + Sbjct: 133 LPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCALFYEC 189 Query: 185 TMMFDISPHVFFPSPKVTSTVI------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 ++ I F+P P V S + F + N + KI + F RRK ++ Sbjct: 190 KIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKN-----FKLFIKIVKALFSSRRKNIK 244 Query: 239 QSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 +L N +L ++G+ NLRAE+L++ DF +++I+ Sbjct: 245 NNLGSWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290 >gi|317014800|gb|ADU82236.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Helicobacter pylori Gambia94/24] Length = 271 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVGALPPLNSLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ L+ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 GLCEKMRARLR--AEKKPFNLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEIIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|256371337|ref|YP_003109161.1| ribosomal RNA adenine methylase transferase [Acidimicrobium ferrooxidans DSM 10331] gi|256007921|gb|ACU53488.1| ribosomal RNA adenine methylase transferase [Acidimicrobium ferrooxidans DSM 10331] Length = 279 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 137/282 (48%), Gaps = 24/282 (8%) Query: 11 KTILSHYKII---PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + I++H + I P K +GQNFL D NI +K A + +E+G G G+LT L Sbjct: 7 REIVAHLERIGLEPSKALGQNFLTDGNIARKEAALAAEAGLRVAVEVGPGLGSLTVWLAE 66 Query: 68 LGARKVIVIEKDQQFFPILKDI-SSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIAN 124 +V+ +E D++ P L ++ +++ + + I DAL + E+ P ++AN Sbjct: 67 Y-FDEVVALEADRRLIPALGEVLAARGIDNVRIEHADALADPLPLER-----RPSALVAN 120 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+ G+++L + + W F E + ++ Q E +RI A + L V A Sbjct: 121 LPYHSGSQILVRLVE-EAW--FLERVVVMVQAEFADRIVAAAGTRACSALGVRLALSIDA 177 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQS 240 + + P VF P P V S ++ P+ P ++ + + F +RR+ LR++ Sbjct: 178 HVAAKVPPVVFHPQPTVWSKLVVADRRSEPLAVTEPTTFDATVRAIRHGFERRRQMLRRA 237 Query: 241 LKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LG + L L GI+ RAE+L+++++ + + ++ Sbjct: 238 ---LGDDELAALDAVGIDPMRRAESLALDEWVALGRAIATSK 276 >gi|47226710|emb|CAG07869.1| unnamed protein product [Tetraodon nigroviridis] Length = 311 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 17/235 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ + E + V+E+G G GN+T LL A+KV+ E D + Sbjct: 27 IGQHILKNPLIVNSVIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDCRLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-----RLLFNW 137 L+ P N+L+I+ D LK D FF++ +ANLPY + T R++F Sbjct: 86 ELQKRVQCTPMQNKLQILVGDVLKTDLP-FFDVC-----VANLPYQVDTFLFRRRIVFKL 139 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + PF+ L+FQ+E R+ A Y RLS+ T + + + + F P Sbjct: 140 L---LHRPFFRCAVLMFQREFPMRLVAPPGDKLYCRLSINTQLLARVDHLMKVGKNNFRP 196 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S+V+ P P P + + + AF ++ KTL + K E LL + Sbjct: 197 PPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLEK 251 >gi|66810281|ref|XP_638864.1| dimethyladenosine transferase [Dictyostelium discoideum AX4] gi|74854506|sp|Q54QK7|DIMT1_DICDI RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|60467487|gb|EAL65509.1| dimethyladenosine transferase [Dictyostelium discoideum AX4] Length = 314 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 99/197 (50%), Gaps = 12/197 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 T H++ K GQ+ L + I+ I + S TV+EIG G GNLT LL + Sbjct: 20 TAARHHEFQMNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLE-NCK 78 Query: 72 KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 KVI IE D + L+ +S + L+II D LKVD +F++ +AN+PY I Sbjct: 79 KVIAIEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLP-YFDVC-----VANVPYQI 132 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + L F ++ P + + L+FQKE R+ A+ Y RLSV T +K T + Sbjct: 133 SSPLTFKLLA---HRPIFRTAVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMK 189 Query: 190 ISPHVFFPSPKVTSTVI 206 + + F P PKV S V+ Sbjct: 190 VGKNNFLPPPKVESAVV 206 >gi|312371948|gb|EFR20006.1| hypothetical protein AND_20790 [Anopheles darlingi] Length = 294 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 12/234 (5%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 T L I+ K GQ+ L + ++ + E + V+EIG G GN+T +L + Sbjct: 2 TCLILLGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKILE-KVK 60 Query: 72 KVIVIEKDQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 KV+ E D + L K + H +L+I+ D LK D FF+I +AN+PY I Sbjct: 61 KVVACEIDPRLVAELQKRVQGTHLQPKLQILIGDVLKTDLP-FFDIC-----VANMPYQI 114 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +F + PF+ L+FQ+E +R+ A+ Y RLS+ T + M+ Sbjct: 115 SSPFVFKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMK 171 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + F P PKV S+V+ P P P +T+ AF ++ KTL + K+ Sbjct: 172 VGKNNFKPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQ 225 >gi|58385178|ref|XP_313763.2| AGAP004465-PA [Anopheles gambiae str. PEST] gi|55240843|gb|EAA09266.2| AGAP004465-PA [Anopheles gambiae str. PEST] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 12/227 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L +KV+ E Sbjct: 21 IVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKILE-KVKKVVACEI 79 Query: 79 DQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L K + H +L+I+ D LK D FF+I +AN+PY I + +F Sbjct: 80 DTRLVAELQKRVQGTHMQPKLQILIGDVLKTDLP-FFDIC-----VANMPYQISSPFVFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + PF+ L+FQ+E +R+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 P PKV S+V+ P P P +T+ AF ++ KTL + K+ Sbjct: 191 PPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQ 237 >gi|317179606|dbj|BAJ57394.1| dimethyladenosine transferase [Helicobacter pylori F30] Length = 271 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + + + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCTKDSQ---NALSVLTQAIGSATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFI---------PHLNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|170058055|ref|XP_001864755.1| dimethyladenosine transferase [Culex quinquefasciatus] gi|167877296|gb|EDS40679.1| dimethyladenosine transferase [Culex quinquefasciatus] Length = 306 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 12/240 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + T ++ I+ K GQ+ L + I+ + E + V+EIG G GN+T + Sbjct: 8 KKTRVHTEVAKQGIVFNKDFGQHILKNPLIVTSMLEKAALRPTDVVLEIGPGTGNMTVKI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L +KVI E D + L+ P ++L+I+ D LK D FF+ +A Sbjct: 68 LE-KVKKVIACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLP-FFDCC-----VA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + +F + PF+ L+FQ E +R+ A+ Y RLSV T + Sbjct: 121 NMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ I + F P PKV S+V+ P P P +T+ AF ++ KTL + K+ Sbjct: 178 VDMLMKIGKNNFRPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLSAAFKQ 237 >gi|213511764|ref|NP_001135031.1| Probable dimethyladenosine transferase [Salmo salar] gi|209738164|gb|ACI69951.1| Probable dimethyladenosine transferase [Salmo salar] Length = 306 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 12/230 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV+ E D + Sbjct: 27 LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDGRLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L+I+ D LK + FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ P P P + + + AF ++ KTL K E LL + Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVERLLEK 246 >gi|229027888|ref|ZP_04184043.1| Dimethyladenosine transferase [Bacillus cereus AH1271] gi|228733402|gb|EEL84229.1| Dimethyladenosine transferase [Bacillus cereus AH1271] Length = 220 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D F + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214 >gi|229182436|ref|ZP_04309688.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1] gi|228601016|gb|EEK58584.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1] Length = 220 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 19/219 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D F + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL--KKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 215 >gi|324516507|gb|ADY46552.1| Dimethyladenosine transferase [Ascaris suum] Length = 308 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 120/259 (46%), Gaps = 21/259 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + I+ I E S + TV+E+G G GNLT +L A+KVI E D + Sbjct: 30 GQHILKNPGIVNAIIEKSAIKNTDTVLEVGPGTGNLTVKILE-HAKKVIACEIDTRMIAE 88 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 LK P +LE+ D +KV++ FF++ +ANLPY I + +F + Sbjct: 89 LKKRVLGTPVQQKLEVRPGDVMKVEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 142 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ Y RLSV K + + F P PKV S Sbjct: 143 PRYA---VLMFQKEFADRLLAKPCEKSYCRLSVNVQLLAKVEHLMRVKRTEFRPPPKVDS 199 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR--- 260 V+ P P P + + + F ++ KTL K+ +LL E N R Sbjct: 200 AVVRIEPRNPPPPINFQEWDGLLRIVFLRKSKTLLSIFKQKQVCDLL-----EKNYRIVC 254 Query: 261 -AENLSIEDFCRITNILTD 278 A+N+ ++ +I N L D Sbjct: 255 SAKNMPLDKSFKIRNKLED 273 >gi|301166053|emb|CBW25627.1| dimethyladenosine transferase [Bacteriovorax marinus SJ] Length = 267 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 23/258 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+FL N++ I + +IE+G GPG LT+ L VIEKD++F Sbjct: 10 KNLGQHFLRSQNVIDSITNDFKE-EAQAIIEVGPGPGILTEFLAK-HELPFFVIEKDKRF 67 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLLFNWI 138 L+ I DAL++ E FF + I +++NLPYN+ LL ++I Sbjct: 68 PEYLEQFIPSE----AITLSDALEIHLEDFFEQKEINNKDIWLVSNLPYNVSVPLLISFI 123 Query: 139 SADTWPPFWESLTLLFQKEVGERITA---QKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 A P + +TL+FQ+EV +++ + K + G L VL+ +++ P F Sbjct: 124 KA----PQIKYMTLMFQREVADKVISFMNPKKNKSMGSLLVLSQTYFDVSVLCQAPPGAF 179 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLK-RLGGENL--- 249 P PKV STV+ F NP+ E + ++ F +RK L LK E L Sbjct: 180 QPPPKVDSTVVSFKRRENPVIALSEFKQFESFLRKLFQFKRKQLGSVLKSHYSPEKLADA 239 Query: 250 LHQAGIETNLRAENLSIE 267 ++G+ RAE+ S+E Sbjct: 240 FEKSGVLRTDRAESFSLE 257 >gi|290996728|ref|XP_002680934.1| predicted protein [Naegleria gruberi] gi|284094556|gb|EFC48190.1| predicted protein [Naegleria gruberi] Length = 308 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 12/218 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L++ ++ + E + TV+EIG G GN+T LL A+KVI IE D + Sbjct: 25 QKSFGQHILINPGVIDHVIEKACIQPTDTVLEIGPGTGNMTVKLLQ-KAKKVIAIEVDPR 83 Query: 82 FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 LK + ++L+II DALKV+ +F++ IANLPY I + + F ++ Sbjct: 84 MVVELKKRVQGTALESKLQIIHKDALKVELP-YFDLC-----IANLPYQISSPITFKLLA 137 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + L++Q+E +R+ A+ Y RLSV T + + +S + F P P Sbjct: 138 HQ---PSFRVAYLMYQREFAQRLVAKPGDNLYCRLSVNTQLLARCDHVVKVSKNSFRPPP 194 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 KV S+++ P P P + + F +R K L Sbjct: 195 KVESSIVRIEPKNPPPPINFLEWDGLARILFQRRNKQL 232 >gi|262066560|ref|ZP_06026172.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC 33693] gi|291379742|gb|EFE87260.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC 33693] Length = 264 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S + ++EIG G G LT +L+ A+K+ +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVE-RAKKLTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N ++ D L+VD K+ N + +++AN+PY I + ++ I Sbjct: 65 DLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKGT--KVVANIPYYITSPIINKLIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K L++ + +A +F I F P P Sbjct: 122 ---KELIDEAYIMVQKEVGERICA-KAGKERSILTLAVEYYGEADYLFTIPREFFNPIPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N + L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKVSEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q I N RAEN+SI+ F + +I Sbjct: 236 NQVEISENERAENISIDKFIELIDIF 261 >gi|228898795|ref|ZP_04063078.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222] gi|228905838|ref|ZP_04069736.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200] gi|228937344|ref|ZP_04099991.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950590|ref|ZP_04112725.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956483|ref|ZP_04118280.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963140|ref|ZP_04124310.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228970230|ref|ZP_04130890.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976800|ref|ZP_04137213.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407] gi|229039946|ref|ZP_04189711.1| Dimethyladenosine transferase [Bacillus cereus AH676] gi|229067806|ref|ZP_04201124.1| Dimethyladenosine transferase [Bacillus cereus F65185] gi|229107728|ref|ZP_04237365.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15] gi|229125559|ref|ZP_04254592.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4] gi|229148451|ref|ZP_04276708.1| Dimethyladenosine transferase [Bacillus cereus m1550] gi|229176642|ref|ZP_04304047.1| Dimethyladenosine transferase [Bacillus cereus 172560W] gi|229188327|ref|ZP_04315376.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876] gi|228595126|gb|EEK52896.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876] gi|228606809|gb|EEK64225.1| Dimethyladenosine transferase [Bacillus cereus 172560W] gi|228634993|gb|EEK91565.1| Dimethyladenosine transferase [Bacillus cereus m1550] gi|228657876|gb|EEL13681.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4] gi|228675701|gb|EEL30908.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15] gi|228715290|gb|EEL67148.1| Dimethyladenosine transferase [Bacillus cereus F65185] gi|228727405|gb|EEL78597.1| Dimethyladenosine transferase [Bacillus cereus AH676] gi|228782896|gb|EEM31061.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407] gi|228789465|gb|EEM37384.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796525|gb|EEM43963.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228803173|gb|EEM49994.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228809065|gb|EEM55549.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228822302|gb|EEM68283.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853778|gb|EEM98537.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200] gi|228860820|gb|EEN05197.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222] Length = 220 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + FN + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214 >gi|300120833|emb|CBK21075.2| unnamed protein product [Blastocystis hominis] Length = 314 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 14/219 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ+F+ +++++ I E SG V+EIG G G LT LL A+KVI IEKD++ Sbjct: 22 KGGLGQHFIKNISVVHNIIEKSGIKPTDIVLEIGPGAGILTMELLK-KAKKVIAIEKDER 80 Query: 82 FF-PILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 I K + +++ + LEI+ D LKV+ +F++ ++N+PY I + ++F + Sbjct: 81 MVHEIQKKVQGTEYESHLEIVYGDFLKVEL-PYFDLC-----VSNVPYVISSGVVFKLLQ 134 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + L+FQ+E +R+ A+ Y R+SV T + + + + F P P Sbjct: 135 HR---PIFRAAILMFQEEFTQRLCAKPGDNMYSRISVNTQLLARTQQLLKVGRNNFNPPP 191 Query: 200 KVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTL 237 KV S V P LNP P E + F ++ KTL Sbjct: 192 KVESRVCRIEP-LNPRPEVNFEEWDGLVNICFHRKNKTL 229 >gi|289740727|gb|ADD19111.1| ribosomal RNA adenine dimethylase [Glossina morsitans morsitans] Length = 306 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + ++EIG G GN+T +L +KVI E Sbjct: 21 ILFNKEFGQHILKNPLVITSMLEKAAIRSTDVILEIGPGTGNMTVRMLE-RCKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+I+ D LK D FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPMQYKLQILIGDFLKADLP-FFDLC-----IANIPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E +R+ A+ Y RLSV T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSVNTQLLARVDMLMKVGKNNFK 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRVAFLRKNKTLAAAFK 236 >gi|330844811|ref|XP_003294306.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum] gi|325075260|gb|EGC29171.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum] Length = 315 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 12/197 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 T H++ K GQ+ L + I+ I E + TV+EIG G GNLT LL + Sbjct: 21 TAARHHEFQMNKSYGQHLLKNPLIIDSIVEKAQLKSTDTVLEIGPGTGNLTMKLLE-NCK 79 Query: 72 KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 KVI +E D + L+ +S + L+II D LKVD +F++ +AN+PY I Sbjct: 80 KVIAVEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLP-YFDVC-----VANVPYQI 133 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + L F ++ P + + L+FQ+E R+ A+ Y RLSV T +K T + Sbjct: 134 SSPLTFKLLA---HRPIFRTAVLMFQREFALRLAAKPGDSLYCRLSVNTQLLSKVTHLMK 190 Query: 190 ISPHVFFPSPKVTSTVI 206 + + F P PKV S V+ Sbjct: 191 VGKNNFLPPPKVESAVV 207 >gi|195589589|ref|XP_002084534.1| GD14323 [Drosophila simulans] gi|194196543|gb|EDX10119.1| GD14323 [Drosophila simulans] Length = 381 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 54/291 (18%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ ++ Y++ +K + QNFL+D + KI Sbjct: 104 TIRELVKLYRLQARKQLSQNFLMDERLTDKI----------------------------- 134 Query: 69 GARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIAN 124 +++++EKD +F +LK+ +S + +I DD L+ + E+ + S I +I N Sbjct: 135 ---RLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHLIGN 191 Query: 125 LPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 LP+ I TRLL NW+ A F +TL FQ+EV ERI A RLSV++ Sbjct: 192 LPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ 251 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRKT 236 T+ M F I F P P+V V+ IP P +P L ++++ + F R+K Sbjct: 252 VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHL--VERVVRHIFSMRQKY 309 Query: 237 LRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L + L +A ++ LR L++E R+ + +++ Sbjct: 310 CRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 360 >gi|194906638|ref|XP_001981404.1| GG11635 [Drosophila erecta] gi|190656042|gb|EDV53274.1| GG11635 [Drosophila erecta] Length = 306 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 16/271 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+++ D LK + FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E ER+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGI 255 P PKV S+V+ P P P +T+ AF ++ KTL + K +L + + Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL 250 Query: 256 ETNLRAENLSIEDFCRITNILT--DNQDIAI 284 +LR E + +DF +++ + QD+A+ Sbjct: 251 YRSLRNEPVE-DDFKMQDKVISILEEQDMAV 280 >gi|307211915|gb|EFN87842.1| Probable dimethyladenosine transferase [Harpegnathos saltator] Length = 306 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 25/263 (9%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I++ + E + ++E+G G GN+T LL A+KVI E D + Sbjct: 25 KDFGQHILKNPLIIQNMVEKAALRPTDVILEVGPGTGNMTIKLLE-KAKKVIAYEVDPRL 83 Query: 83 FPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + + +LEI+ D LK D FF++ +AN+PY I + L+F + Sbjct: 84 VAELQKRVQGTLYQPKLEIMVGDVLKSDLP-FFDLC-----VANIPYQISSPLVFKLL-- 135 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L+FQ+E ER+ A+ Y RLS+ T + M+ + + F P PK Sbjct: 136 -LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFKPPPK 194 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S V+ P P + +T+ AF ++ KTL + K+ T + Sbjct: 195 VESNVVRIEPRNPSPPINYQEWDSLTRIAFLRKNKTLSAAFKQ----------NTVTTML 244 Query: 261 AENLSIEDFCRITN-ILTDNQDI 282 +N I C + N + DN DI Sbjct: 245 EKNYKIH--CSLNNKVFPDNFDI 265 >gi|225717560|gb|ACO14626.1| Probable dimethyladenosine transferase [Caligus clemensi] Length = 313 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 14/216 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E SG TV+EIG G GNLT LL ++VIV E D + Sbjct: 34 LGQHILKNPAVVDSIIEKSGLRPTDTVLEIGPGTGNLTAKLLD-KVKRVIVCEVDPRMVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +LEI+ DA+K + FF++ +AN+PY I + L+F + Sbjct: 93 ELQKRFQHSPFKPKLEILVGDAIKTELP-FFDVC-----VANVPYQISSPLVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAVLMFQREFAMRLIAAPGDKLYCRLSINTQLLSTVHHLLKVGRNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237 S+V+ I H NP P + +T+ F ++ KTL Sbjct: 204 SSVVR-IEHKNPPPPINFKEWDGLTRICFVRKNKTL 238 >gi|229021649|ref|ZP_04178236.1| Dimethyladenosine transferase [Bacillus cereus AH1272] gi|228739652|gb|EEL90061.1| Dimethyladenosine transferase [Bacillus cereus AH1272] Length = 220 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 19/219 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D F + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 215 >gi|291280249|ref|YP_003497084.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1] gi|290754951|dbj|BAI81328.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1] Length = 269 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 24/265 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEKD- 79 KK +GQ+FL + + + +I + V+EIG G G LT +L G +V I+ D Sbjct: 16 KKSLGQHFLTNKHFISEIVSFLDLKEHDNVVEIGPGCGVLTYEILQKGVNLTVVDIDSDV 75 Query: 80 ----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 ++ K++ + + +EI +DD ++ NLPYN+ ++ Sbjct: 76 CDFLSRYLYYFKNLKIINKDFIEITRDDL----------PDGKLKFAGNLPYNVSVKIFE 125 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E +T +FQKEV +R+T++ S Y LS+ + + +IS F Sbjct: 126 KCVD---FIDDIELMTFMFQKEVADRLTSEPCSKTYSSLSIFAQYYFNIEKIRNISGANF 182 Query: 196 FPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 +P+ KVTSTV+ FIP + N + + F +RKTL+ +L L E L Sbjct: 183 WPNTKVTSTVLKFIPRERYFNDLN-KEKRFFDFVMSCFKSKRKTLKNNLSYLSKEQLEKI 241 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 +RAE LS++DF ++ ++ Sbjct: 242 DKHFGEKIRAEQLSLDDFIKLFEMI 266 >gi|228912781|ref|ZP_04076429.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925295|ref|ZP_04088392.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931544|ref|ZP_04094451.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943848|ref|ZP_04106234.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983297|ref|ZP_04143511.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089173|ref|ZP_04220455.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42] gi|229119704|ref|ZP_04248966.1| Dimethyladenosine transferase [Bacillus cereus 95/8201] gi|229136888|ref|ZP_04265516.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26] gi|229153820|ref|ZP_04281951.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342] gi|229194432|ref|ZP_04321236.1| Dimethyladenosine transferase [Bacillus cereus m1293] gi|228589022|gb|EEK47036.1| Dimethyladenosine transferase [Bacillus cereus m1293] gi|228629624|gb|EEK86320.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342] gi|228646553|gb|EEL02759.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26] gi|228663729|gb|EEL19307.1| Dimethyladenosine transferase [Bacillus cereus 95/8201] gi|228694136|gb|EEL47817.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42] gi|228776411|gb|EEM24763.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815805|gb|EEM62040.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828096|gb|EEM73823.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834342|gb|EEM79882.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846841|gb|EEM91845.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 220 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D F + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214 >gi|208435299|ref|YP_002266965.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori G27] gi|226732586|sp|B5Z950|RSMA_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|208433228|gb|ACI28099.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori G27] Length = 271 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + ++ LK + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 NLCEKMRARLK--AQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + + + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQ---NALSVLVHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|257792392|ref|YP_003182998.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM 2243] gi|257476289|gb|ACV56609.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM 2243] Length = 347 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 84/335 (25%), Positives = 137/335 (40%), Gaps = 82/335 (24%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLG 69 + +L + + K +GQNFL++ IL+KI + + V+E+G G G LT LL ++G Sbjct: 14 RAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLVPDDYVLEVGPGIGTLTVALLKSVG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL---KVDF----------------- 109 +V+ +E+D +L + S +R ++ DAL DF Sbjct: 74 --RVLSVERDPDLPAVLAETLSPWADRFALLNKDALDLCSADFQSAEPLDAAASRGARSR 131 Query: 110 -----------------------EKFFNISSPIRI-----IANLPYNIGTRLLFNWISAD 141 E +++ P+R+ +ANLPY + ++ ++ Sbjct: 132 GEAQGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAVAATVVLDYFERF 191 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ES T++ QKEV +R+ A + +YG +V + F + P FFP P+V Sbjct: 192 AS---LESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFAVGPGNFFPPPRV 248 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEA-----------FGKRRKTLRQSLKR-LGGEN- 248 S V+ LN P + + +A F RRKTL S K G Sbjct: 249 ESAVL----RLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCKTYFAGRGP 304 Query: 249 -----------LLHQAGIETNLRAENLSIEDFCRI 272 L +AGI+ LR E L + +F R+ Sbjct: 305 QGAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339 >gi|168033422|ref|XP_001769214.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679479|gb|EDQ65926.1| predicted protein [Physcomitrella patens subsp. patens] Length = 302 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 42/281 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-Q 80 +K GQ+ L + +++ I + +G V+EIG G GNLT LL + +KV+ +E D + Sbjct: 22 QKSKGQHILKNPLLVQSIVQKAGLKSTDIVLEIGPGTGNLTMKLLEV-CKKVVAVELDPR 80 Query: 81 QFFPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + + + + N+L++IQ D LK + +F++ +AN+PY I + + F +S Sbjct: 81 MVLEVTRRVQGTPYANKLQVIQGDILKTELP-YFDVC-----VANVPYQISSPITFKLLS 134 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + ++FQKE +R+ AQ + RLSV T + + + + F P P Sbjct: 135 HR---PLFRCAVIMFQKEFAQRLVAQPGDSLFCRLSVNTQLLARVFHLLKVGKNNFRPPP 191 Query: 200 KVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLR-------------------Q 239 KV S+V+ P NP+P + + + F ++ KTL Q Sbjct: 192 KVDSSVVRIEPR-NPLPPINFKEWDGLIRLCFNRKNKTLGSIFRQKAVLALIEKNYKTFQ 250 Query: 240 SLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRI 272 +L+ GG +L + G E R+ L+ +DF R+ Sbjct: 251 ALQEAGGNTFFKEKCLGVLAEGGYEDK-RSSKLTQDDFLRL 290 >gi|27151490|sp|Q95KJ0|DIMT1_MACFA RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|13874484|dbj|BAB46866.1| hypothetical protein [Macaca fascicularis] Length = 313 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELRKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E+ R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQRELALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|170016041|ref|NP_001116194.1| DIM1 dimethyladenosine transferase 1-like [Xenopus (Silurana) tropicalis] gi|169641837|gb|AAI60444.1| LOC779588 protein [Xenopus (Silurana) tropicalis] Length = 306 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 19/261 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A++V+ E D + Sbjct: 27 LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRVVACELDTRLVA 85 Query: 85 ILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ S ++L+++ D LK D FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260 S+V+ P P P + + + AF ++ KTL + K + LL + I +L Sbjct: 197 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLEKNYKIHCSLHN 256 Query: 261 ---AENLSIEDFCRITNILTD 278 EN SI + +I +LT+ Sbjct: 257 ISVPENFSIAE--KIEGVLTE 275 >gi|157103251|ref|XP_001647892.1| dimethyladenosine transferase [Aedes aegypti] gi|157126646|ref|XP_001654689.1| dimethyladenosine transferase [Aedes aegypti] gi|108873212|gb|EAT37437.1| dimethyladenosine transferase [Aedes aegypti] gi|108884724|gb|EAT48949.1| dimethyladenosine transferase [Aedes aegypti] Length = 306 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 +K + T ++ I+ K GQ+ L + I+ + + +G V+EIG G GN+T Sbjct: 7 DKKSRVHTDVAKQGIVFNKDFGQHILKNPLIVTSMLDKAGLRPTDVVLEIGPGTGNMTVK 66 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122 LL +KV+ E D + L+ P ++L+I+ D LK D FF+ + Sbjct: 67 LLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLP-FFDCC-----V 119 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 AN+PY I + +F + PF+ L+FQ E +R+ A+ Y RLSV T Sbjct: 120 ANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLA 176 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + M+ + + F P PKV S+V+ P P +T+ AF ++ KTL + K Sbjct: 177 RVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPINYTEWDGLTRIAFLRKNKTLAAAFK 236 Query: 243 RLGGENLLHQA-GIETNLRAENL 264 + L Q ++ +L+ ++L Sbjct: 237 QTSVMTALEQNFKMQCSLKNQDL 259 >gi|319789994|ref|YP_004151627.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1] gi|317114496|gb|ADU96986.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1] Length = 250 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 15/257 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+FL D N++++IA++ V+EIG G G LT+ LL + + IE D Sbjct: 4 KKRYGQHFLKDRNVIRRIADALPITSDDVVVEIGPGGGALTEELLARNPKALYAIEIDPD 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + LK+ + +R+ + DA DF + + ++ NLPYN+ T ++ N ++ Sbjct: 64 WVDYLKE---RFKDRITVFNADATTFDFSQ---LGRGLKFFGNLPYNVSTAIIRNLLNHR 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV R+TA +G L L +FD+ P F P PKV Sbjct: 118 SA---FSGGVFMVQKEVAGRLTATGGK-EFGYLPALLQRFFTVKPLFDVPPGAFKPPPKV 173 Query: 202 TSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-QAGIETNL 259 STV+ P + L + + AF RRK L++++ + GE H Q +E Sbjct: 174 WSTVVKLEPKEPELSDEELLPFENFLKMAFSHRRKKLKKNIP-VKGELPPHLQPLLEK-- 230 Query: 260 RAENLSIEDFCRITNIL 276 RAE L+ E + L Sbjct: 231 RAEELTGEQLLELFRAL 247 >gi|294783118|ref|ZP_06748442.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA] gi|294479996|gb|EFG27773.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA] Length = 264 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL +I E S + ++EIG G G LT +L+ A+K+ +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNQIIEVSNIDENDEILEIGPGQGALTNLLVE-RAKKLTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N ++ D L+VD K+ N + +++AN+PY I + ++ I Sbjct: 65 DLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKGT--KVVANIPYYITSPIINKLIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K L++ + +A +F I F P P Sbjct: 122 ---KELIDEAYIMVQKEVGERICA-KAGKERSILTLAVEYYGEADYLFTIPREFFNPVPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 +Q I N RAEN+SI+ F + +I Sbjct: 236 NQVEISENERAENISIDKFIELIDIF 261 >gi|228918992|ref|ZP_04082372.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840641|gb|EEM85902.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 220 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 19/219 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + FN + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 215 >gi|197246216|gb|AAI69134.1| hypothetical protein LOC779588 [Xenopus (Silurana) tropicalis] Length = 306 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 19/261 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A++V+ E D + Sbjct: 27 LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRVVACELDTRLVA 85 Query: 85 ILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ S ++L+++ D LK D FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260 S+V+ P P P + + + AF ++ KTL + K + LL + I +L Sbjct: 197 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLEKNYKIHCSLHN 256 Query: 261 ---AENLSIEDFCRITNILTD 278 EN SI + +I +LT+ Sbjct: 257 ISVPENFSIAE--KIEGVLTE 275 >gi|170595215|ref|XP_001902290.1| Probable dimethyladenosine transferase [Brugia malayi] gi|158590104|gb|EDP28858.1| Probable dimethyladenosine transferase, putative [Brugia malayi] Length = 306 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 13/193 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + I+ I E S TV E+G+G GNLT LL A+KVI E D++ Sbjct: 28 GQHILKNPGIVNAIVEKSAIKSTDTVFEVGSGTGNLTVALLG-KAKKVIACEIDRRMIAE 86 Query: 86 LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 LK I + + +LE+ Q D +K ++ FF++ +ANLPY I + +F + Sbjct: 87 LKKRVIGTSNQQKLEVRQGDVIKTEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 140 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ + Y RLSV + + + + F P PKV S Sbjct: 141 PRYA---VLMFQKEFADRLLAKPGNKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDS 197 Query: 204 TVIHFIPHLNPIP 216 V+ P NP P Sbjct: 198 AVVRIAPR-NPPP 209 >gi|156393635|ref|XP_001636433.1| predicted protein [Nematostella vectensis] gi|156223536|gb|EDO44370.1| predicted protein [Nematostella vectensis] Length = 308 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 12/214 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ + + +G TV+EIG G GNLT LL ++KVI E D + Sbjct: 30 GQHILKNPLVITSLVDKAGLRSTDTVLEIGPGTGNLTVKLLE-QSKKVIACELDPRMVAE 88 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ P ++L ++ D LK D FF++ +ANLPY I + +F + Sbjct: 89 LQKRVQGTPLQSKLSVMVGDVLKTDLP-FFDVC-----VANLPYQISSPFVFKLL---LH 139 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E +R+ A+ Y RLS+ T + + + + F P PKV S Sbjct: 140 RPFFRCAVLMFQREFAQRLIAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVES 199 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 +V+ P P P + + + AF ++ KTL Sbjct: 200 SVVRIEPKNPPPPVNFKEWDGLVRIAFVRKNKTL 233 >gi|116063351|gb|AAI23078.1| LOC779588 protein [Xenopus (Silurana) tropicalis] Length = 304 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 19/261 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A++V+ E D + Sbjct: 25 LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRVVACELDTRLVA 83 Query: 85 ILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ S ++L+++ D LK D FF++ +ANLPY I + +F + Sbjct: 84 ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 134 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 135 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVE 194 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260 S+V+ P P P + + + AF ++ KTL + K + LL + I +L Sbjct: 195 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLEKNYKIHCSLHN 254 Query: 261 ---AENLSIEDFCRITNILTD 278 EN SI + +I +LT+ Sbjct: 255 ISVPENFSIAE--KIEGVLTE 273 >gi|289704908|ref|ZP_06501325.1| dimethyladenosine transferase [Micrococcus luteus SK58] gi|289558404|gb|EFD51678.1| dimethyladenosine transferase [Micrococcus luteus SK58] Length = 307 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 34/291 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + + P K GQNF++D N +++I +++ V+EIG G G+LT LL Sbjct: 16 AADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVTADEHVLEIGPGLGSLTLGLL 75 Query: 67 TLGARKVIVIEKD-----------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN- 114 A V +E D +F P +D L ++ DA+ + + Sbjct: 76 DAAA-AVTAVEIDPVTAARLPRTAAEFRPGAEDA-------LAVLHADAMTLSEQALAEV 127 Query: 115 -----ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + P ++ANLPYN+ +L + ++ P L ++ Q+EV +R+ A S Sbjct: 128 RPAAAVGGPTALVANLPYNVAVPVLLHALA--VLPGLRHGL-VMVQEEVADRLAAGPGSK 184 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQE 228 YG S W + VF+P+P++ S ++ F P + + Sbjct: 185 VYGVPSAKAAWYADVRKAGTVGTQVFWPAPRIHSGLVAFTRREPPTGGAPRREVFAVVDA 244 Query: 229 AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 AF +RRKTLR +L G E+ L AG++ R E L I F RI Sbjct: 245 AFAQRRKTLRAALASWAGSPQAAEDALVAAGVDPRARGEALDIAAFARIAE 295 >gi|21358017|ref|NP_651660.1| CG11837 [Drosophila melanogaster] gi|195574637|ref|XP_002105291.1| GD21406 [Drosophila simulans] gi|27151493|sp|Q9VAQ5|DIMT1_DROME RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|7301735|gb|AAF56847.1| CG11837 [Drosophila melanogaster] gi|16769516|gb|AAL28977.1| LD35950p [Drosophila melanogaster] gi|194201218|gb|EDX14794.1| GD21406 [Drosophila simulans] gi|220944428|gb|ACL84757.1| CG11837-PA [synthetic construct] gi|220954304|gb|ACL89695.1| CG11837-PA [synthetic construct] Length = 306 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+++ D LK + FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E ER+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|195394465|ref|XP_002055863.1| GJ10534 [Drosophila virilis] gi|194142572|gb|EDW58975.1| GJ10534 [Drosophila virilis] Length = 306 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+++ D LK D FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPLQPKLQVLIGDFLKADLP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E +R+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|302830902|ref|XP_002947017.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f. nagariensis] gi|300268061|gb|EFJ52243.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f. nagariensis] Length = 463 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 91/336 (27%), Positives = 138/336 (41%), Gaps = 73/336 (21%) Query: 9 SLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ T+ + Y +I KK +GQNFL D +L+ I ++G V+E+G G GNLT+ LL Sbjct: 92 AISTVANLYEDRIKAKKSLGQNFLTDDAVLQDIVAAAGVGPQDLVLEVGPGTGNLTKHLL 151 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------NISSP- 118 GA V +EKD + L+ P RL +I DALKV E + P Sbjct: 152 ASGA-GVTAVEKDDTLYGRLQKEYGDVP-RLTLIHGDALKVGLEDIIRGMMLQQDRQDPA 209 Query: 119 --------------------------------------IRIIANLPYNIGTRLLFNWISA 140 ++++ANLPYNI LL + Sbjct: 210 ASSESVSSAESALASTSTSGASSRGYKPGSSAAAGGRKVKVVANLPYNITKDLLTLLLPL 269 Query: 141 DTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLT----------GW--RTKATMM 187 W L ++ Q E R+T P + ++ T GW R ++ Sbjct: 270 GDW---ISDLHIMIQHEAAVRLTEHTPGGPEWRAANIRTLFYCRPRHGGGWAGRGRSRYR 326 Query: 188 FDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F IS + P P V ++ F P P + + +AF +RRK +R SL+ L Sbjct: 327 FRISRLKYDPVPGVDGALVTFSLIPPSARPAVPSERAFHSLVVKAFSERRKKMRNSLQPL 386 Query: 245 GG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L + G+ + RA++LS+E F + L Sbjct: 387 YGAEQVEAALSECGLNADSRAQDLSLEQFVAFSRQL 422 >gi|237739754|ref|ZP_04570235.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31] gi|229423362|gb|EEO38409.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31] Length = 264 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 21/266 (7%) Query: 22 KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + + IL KI E S + ++EIG G G LT +L+ A+K+ +E D+ Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVE-RAKKLTCVEIDK 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ S N ++ D L+VD K+ N + +++AN+PY I + ++ I Sbjct: 65 DLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKGT--KVVANIPYYITSPIINKLIEN 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ QKEVGERI A K L++ + +A +F I F P P Sbjct: 122 ---KELIDEAYIMVQKEVGERICA-KAGKERSILTLAVEYYGEADYLFTIPREFFNPVPN 177 Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250 V S I + N I L K + AF +RK + +L LG + +L Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 ++ I N RAEN+SI+ F + +I Sbjct: 236 NRVEISENERAENISIDKFIELIDIF 261 >gi|166158346|ref|NP_001099878.2| probable dimethyladenosine transferase [Rattus norvegicus] gi|165971279|gb|AAI58730.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Rattus norvegicus] Length = 313 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 19/261 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLAAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + ++ Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263 Query: 258 NLRAENLSIEDFCRITNILTD 278 + E+ SI D +I ILT+ Sbjct: 264 TVIPEDFSIAD--KIQQILTN 282 >gi|13508418|ref|NP_110368.1| dimethyladenosine transferase [Mycoplasma pneumoniae M129] gi|2500512|sp|P75113|RSMA_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|1673824|gb|AAB95811.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Mycoplasma pneumoniae M129] gi|301633390|gb|ADK86944.1| dimethyladenosine transferase [Mycoplasma pneumoniae FH] Length = 263 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 127/257 (49%), Gaps = 17/257 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKD 79 P + +GQNF +D +++ K SL+ +IE+G G G LT+ LL L I ++K Sbjct: 6 PSRKLGQNFTVDQSVIAKTCRLIKSLNPTALIEVGPGKGALTKALLKLQLPYHGIELDKR 65 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + ++ +I ++ ++ DALK + +++F + P+ + N+PY+I + L+ N+++ Sbjct: 66 LAEYLLVNEILTEE----QLTIGDALKQNLDQYFPDTIPL-LCGNIPYSISSPLIANFLA 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + L+ Q E G+R+ A NSP+Y V + + +F I F P P Sbjct: 121 SK-----LQQFVLVCQWEFGQRLVAPVNSPNYSAFGVFCQYHLQIKSVFKIDKVAFKPKP 175 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255 +V S ++ + P + ++ F +RRK L +LK+L N+L Q + Sbjct: 176 QVDSVLM--LLKKKPQVAYEAHFGRFLKQCFHQRRKLLVNNLKQLLPPTLLTNVLQQQDL 233 Query: 256 ETNLRAENLSIEDFCRI 272 +RA+ L+ R+ Sbjct: 234 AATVRAQELTPTQLFRL 250 >gi|50955322|ref|YP_062610.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|62900513|sp|Q6ADP1|RSMA_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50951804|gb|AAT89505.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 280 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 89/267 (33%), Positives = 133/267 (49%), Gaps = 21/267 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P K +GQNF++D N +++I +G G V+E+G G G+LT LL GAR V+ +E Sbjct: 21 VAPTKRLGQNFVIDANTVRRIVRVAGVEAGEVVVEVGPGLGSLTLGLLEAGAR-VVAVEI 79 Query: 79 DQQF---FPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 D + P+ + ++ + RL ++ DAL V P R++ANLPYN+ +L Sbjct: 80 DGRLAERLPLTVAQLAPEAAGRLTVVHSDALAVTELP----ERPGRLVANLPYNVSVPVL 135 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + + P S ++ Q EVG+RI A S YG SV W +S + Sbjct: 136 LHLLERV---PSLRSGVVMVQAEVGQRIAAGPGSKVYGAPSVKAAWYGVWRTAGTVSRQI 192 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGE---- 247 F+P P V S ++ F H P E K+ + AF +RRKTLRQSL + G+ Sbjct: 193 FWPVPNVDSILVGFERHATE-PGDDELRKRTFALVDAAFQQRRKTLRQSLAPVYGDPAAA 251 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRIT 273 L AG+ R E L++ DF R+ Sbjct: 252 GAALEAAGVAPRRRGEQLTLADFVRLA 278 >gi|72389977|ref|XP_845283.1| ribosomal RNA adenine dimethylase family protein, conserved [Trypanosoma brucei TREU927] gi|62359277|gb|AAX79719.1| ribosomal RNA adenine dimethylase family protein, conserved [Trypanosoma brucei] gi|70801818|gb|AAZ11724.1| ribosomal RNA adenine dimethylase family protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 344 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 14/217 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T + LKT S ++ K GQ+ L + ++ I E + V+EIG G GNL Sbjct: 43 TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 102 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119 T+ LL A+KVI E D + L P +L++I+ + L +F F Sbjct: 103 TEKLLQ-AAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 155 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 + +AN+PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + Sbjct: 156 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 211 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + + + IS + F P PKV S+VI P +P P Sbjct: 212 LLARCSHLMKISKNSFNPPPKVESSVIRLDPK-HPAP 247 >gi|261328672|emb|CBH11650.1| ribosomal RNA adenine dimethylase family protein,conserved, putative [Trypanosoma brucei gambiense DAL972] Length = 383 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 14/217 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T + LKT S ++ K GQ+ L + ++ I E + V+EIG G GNL Sbjct: 82 TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 141 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119 T+ LL A+KVI E D + L P +L++I+ + L +F F Sbjct: 142 TEKLLQ-AAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 194 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 + +AN+PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + Sbjct: 195 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 250 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + + + IS + F P PKV S+VI P +P P Sbjct: 251 LLARCSHLMKISKNSFNPPPKVESSVIRLDPK-HPAP 286 >gi|229074103|ref|ZP_04207150.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18] gi|229094763|ref|ZP_04225769.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29] gi|229100830|ref|ZP_04231645.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28] gi|228682597|gb|EEL36659.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28] gi|228688631|gb|EEL42503.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29] gi|228708997|gb|EEL61123.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18] Length = 220 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 19/218 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D F + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214 >gi|21313560|ref|NP_079723.1| probable dimethyladenosine transferase [Mus musculus] gi|27151491|sp|Q9D0D4|DIMT1_MOUSE RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|12847736|dbj|BAB27687.1| unnamed protein product [Mus musculus] gi|18043925|gb|AAH19799.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Mus musculus] gi|74148362|dbj|BAE36330.1| unnamed protein product [Mus musculus] gi|148686528|gb|EDL18475.1| RIKEN cDNA 1500031M22, isoform CRA_b [Mus musculus] Length = 313 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + ++ Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 TVIPEDFSIAD--KIQQILT 281 >gi|319955820|ref|YP_004167083.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511] gi|319418224|gb|ADV45334.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511] Length = 286 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 23/271 (8%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 I K GQNFL D +++++I +S D + V+EIG G G+LT+ L+ + R V E D Sbjct: 11 IADKRFGQNFLEDRSVVEQIIQSMPD-DDLPVVEIGPGLGDLTKELVRV--RPVTAFEVD 67 Query: 80 QQFFPIL-KDISSQ-HPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134 ++ L K+ S + RL + D L E++ N I P R++ANLPY I T ++ Sbjct: 68 KRLCDYLGKNFSREIADGRLRLECGDVL----ERWKNGSLIDRPYRLVANLPYYIATNII 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + P S + QKEV E+ A++ ++ LSVL G +A + + P Sbjct: 124 LKALRD----PHCRSTLTMVQKEVAEKFAAREGDRNFSALSVLAGSVGEARIRLLVPPSA 179 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---- 250 F P PKV S V+ N E+ K AF + RKTL ++L ++LL Sbjct: 180 FNPPPKVESAVLEIRKEHNLTDGGFEAFLKA---AFRQPRKTLMKNLSAAYPKSLLEPLF 236 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + LR + + R+ LT D Sbjct: 237 EALKLGKTLRPHQVGTTLYHRLYQALTKEPD 267 >gi|229159215|ref|ZP_04287240.1| Dimethyladenosine transferase [Bacillus cereus R309803] gi|228624230|gb|EEK81031.1| Dimethyladenosine transferase [Bacillus cereus R309803] Length = 220 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 21/220 (9%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D F + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL------ 241 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVADETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K L + +L + GI+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLNQ-ILTEVGIDPKRRGETLSIEEFATLSNALV 215 >gi|149059278|gb|EDM10285.1| similar to RIKEN cDNA 1500031M22 (predicted), isoform CRA_a [Rattus norvegicus] Length = 313 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 19/261 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + ++ Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263 Query: 258 NLRAENLSIEDFCRITNILTD 278 + E+ SI D +I ILT+ Sbjct: 264 TVIPEDFSIAD--KIQQILTN 282 >gi|269114782|ref|YP_003302545.1| Dimethyladenosine transferase [Mycoplasma hominis] gi|268322407|emb|CAX37142.1| Dimethyladenosine transferase [Mycoplasma hominis ATCC 23114] Length = 257 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 16/250 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL + NI K+I +++ + G +IEIG G G +T + + R ++ IE D++ Sbjct: 6 KSLGQNFLSNKNIQKEIVKAANVV-GKNIIEIGPGMGAITDQMADVVNR-LVCIEFDKRL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + L + + + +EI+ D L+ D K+ + +I N+PYNI + ++F + Sbjct: 64 YEFL--LQKNYSSNVEILNQDFLQTDLLKY----TDFEVIGNIPYNITSDIIFKLLDN-- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 +TL+ QKEV +RI + Y +L+ + +F + F P+PKV Sbjct: 116 -AKNINKITLMVQKEVADRICCGAGNSQYSKLAASIQLLYEPKYLFTVKAKEFNPAPKVD 174 Query: 203 STVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLHQAGIET 257 S VI + I + + I + K ++ F +RKTL + + + L ++ Sbjct: 175 SAVIQLNLIKNNDFIWNNQVEILKFIKQMFQYKRKTLLNNFPSNLKQKISDFLKSNELDL 234 Query: 258 NLRAENLSIE 267 N+RAE ++ E Sbjct: 235 NIRAEKITKE 244 >gi|28572717|ref|NP_789497.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27] gi|28410849|emb|CAD67235.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27] Length = 418 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I DDALK+ + I+ P ++ANLPYNI L+ + + P S T++ Q EV Sbjct: 236 LINDDALKL---RALPIT-PKMLVANLPYNIAVPLIMHVLQQF---PSIVSATIMLQSEV 288 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPC 217 +RI A+ S G ++ W + ++ HVF+P P V S ++ FI + Sbjct: 289 ADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKSDCEV 348 Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 E+ + ++AF KRRK LRQSL+ + + + AGI+ LRAENLS+++F Sbjct: 349 LREATFSLIEDAFSKRRKMLRQSLRYIPQADFV-AAGIDPMLRAENLSVDNF 399 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +P K GQ+F+ D NI KI +G G V+EIG G G LT L A V +E Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71 Query: 78 KDQQFFPIL 86 D + F L Sbjct: 72 IDTRLFNAL 80 >gi|303275612|ref|XP_003057100.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461452|gb|EEH58745.1| predicted protein [Micromonas pusilla CCMP1545] Length = 274 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 132/280 (47%), Gaps = 31/280 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++++GQ+FL+D +++ +++ G +++EIG G GNLT LL+ GA V +EKD+ Sbjct: 1 RRWLGQHFLVDRSVILDALDAADVRAGDSILEIGPGTGNLTAELLSAGA-VVTAVEKDRN 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------NISSPIR--IIANLP 126 L + + N L + + D LK + K F +P R ++AN+P Sbjct: 60 LADKLAETFRGNEN-LTVHEADFLKWNVAKAFPEPTDAAAADAALGDGAPRRAKVVANIP 118 Query: 127 YNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKA 184 YNI T +L + DT +E++ +FQ+EV R I Y +SV + ++ Sbjct: 119 YNITTDILKVLLPMGDT----FENMVFMFQEEVARRLIRDDAGGSDYRPMSVRVRYYSEP 174 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQS 240 + +S F P P V S +I F P P+ Q F ++RK L+ + Sbjct: 175 YYVRPVSAACFDPPPNVESCLIGFRPRRREEYLPLAGTERQFFAFVQTCFAQKRKMLKNN 234 Query: 241 LKRLGGENLLHQAGIETN----LRAENLSIEDFCRITNIL 276 ++ ++ + A N RA+ LS+E++ + N + Sbjct: 235 MRAACDDDTIRDALATLNRPEKTRAQELSMEEYVELFNFV 274 >gi|28493170|ref|NP_787331.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist] gi|28476210|gb|AAO44300.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist] Length = 448 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I DDALK+ + I+ P ++ANLPYNI L+ + + P S T++ Q EV Sbjct: 266 LINDDALKL---RALPIT-PKMLVANLPYNIAVPLIMHVLQ---QFPSIVSATIMLQSEV 318 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPC 217 +RI A+ S G ++ W + ++ HVF+P P V S ++ FI + Sbjct: 319 ADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKSDCEV 378 Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 E+ + ++AF KRRK LRQSL+ + + + AGI+ LRAENLS+++F Sbjct: 379 LREATFSLIEDAFSKRRKMLRQSLRYIPQADFV-AAGIDPMLRAENLSVDNF 429 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +P K GQ+F+ D NI KI +G G V+EIG G G LT L A V +E Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71 Query: 78 KDQQFFPIL 86 D + F L Sbjct: 72 IDTRLFNAL 80 >gi|213580131|ref|ZP_03361957.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 120 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 2/114 (1%) Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKI 225 S YGRLSV+ + + + ++ P F P PKV S V+ +PH P P + L +I Sbjct: 1 SKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRI 60 Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 T EAF +RRKT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 61 TTEAFNQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 114 >gi|71656161|ref|XP_816632.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi strain CL Brener] gi|70881773|gb|EAN94781.1| ribosomal RNA adenine dimethylase family protein, putative [Trypanosoma cruzi] Length = 344 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 14/209 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 LKT S ++ K GQ+ L + ++ I E + V+EIG G GNLT+ LL + Sbjct: 51 LKTGGSQCGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV- 109 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 ++KVI E D + L P ++L++I+ + L +F F + +AN+PY Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F + P ++ L+FQ+E R+ AQ + Y RLSV + + + + Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 IS + F P PKV S+VI P +P P Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPK-HPAP 247 >gi|255088241|ref|XP_002506043.1| predicted protein [Micromonas sp. RCC299] gi|226521314|gb|ACO67301.1| predicted protein [Micromonas sp. RCC299] Length = 266 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/272 (24%), Positives = 136/272 (50%), Gaps = 23/272 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++++GQ+FL+D +++ +++ DG ++EIG G GNLT L+ GA + +EKD+ Sbjct: 1 RRWLGQHFLIDHSVILDALDAAAVTDGDRILEIGPGTGNLTVELVKAGA-VITAVEKDRN 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------NISSPIRIIANLPYNIGTRLL 134 L+ + + + + D LK + + F + +++AN+PYNI T +L Sbjct: 60 LADKLR-TQYDGDDAVTVHEADFLKWNVAREFEHRGVYPGDAHRAKVVANIPYNITTDIL 118 Query: 135 FNWIS-ADTWPPFWESLTLLFQKEVGERITAQKN-SPHYGRLSVLTGWRTKATMMFDISP 192 + DT+ + +FQ+EV R+ Q + + Y +SV + ++ + ++ Sbjct: 119 KTLLPMGDTFG----DMVFMFQEEVARRLIRQDSGASDYRPMSVRVHYYSEPYYIRPVTA 174 Query: 193 HVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGEN 248 F P P V S ++ F P +P + K+ Q F ++RK L+ +L+ + + Sbjct: 175 SCFDPPPNVESCLVGFRPKPRRELPALRGTEKQFFSFVQACFAQKRKMLKNNLRAVCDDE 234 Query: 249 LLHQA----GIETNLRAENLSIEDFCRITNIL 276 ++ A G + RA+ L+++++ R+ N + Sbjct: 235 VIAAALEDLGRDEKTRAQQLTMDEYVRLFNFV 266 >gi|75753575|gb|ABA26919.1| KsgA [Vibrio harveyi] Length = 143 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 2/134 (1%) Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P PKV S V+ Sbjct: 7 QDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVVR 66 Query: 208 FIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P+ P P L L+++ +E F +RRKT+R K L +L + G+ ++R ENL+ Sbjct: 67 LVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVNPSMRPENLT 126 Query: 266 IEDFCRITNILTDN 279 ++ F + N L DN Sbjct: 127 LQQFVAMANWLADN 140 >gi|288818058|ref|YP_003432406.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6] gi|288787458|dbj|BAI69205.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6] gi|308751659|gb|ADO45142.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6] Length = 249 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 23/257 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+ LL ++K I E +G ++EIG G GNLT+ LL +K+ +IE D Q Sbjct: 4 KKRYGQHILLSKGVIKAIVERLSIQEGDILLEIGPGTGNLTRELLNTPLKKLYLIEIDSQ 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK I +R+EI DA + D ++ ++++ NLPYN+ + ++ N + Sbjct: 64 MVHELKKIED---DRVEIFLADATQFD---ICSLGGELKLVGNLPYNVASLIVENTVIHR 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 PF + QKEV +++ P + V T + M + FFP PKV Sbjct: 118 KCIPFA---LFMLQKEVAQKLL---KGPSWLSTFVRTFYDLNYVM--SVPARFFFPKPKV 169 Query: 202 TSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S ++ F+ P +E K+ + + RRK ++ ++ E++L A I+ Sbjct: 170 QSALLEFVR--KPDGEMIEDEKDYKRFLTKLYSMRRKAIKSKIE----EDILKMANIDPL 223 Query: 259 LRAENLSIEDFCRITNI 275 R E LS+ + N+ Sbjct: 224 KRVEELSVAHVLLLYNL 240 >gi|156095981|ref|XP_001614025.1| dimethyladenosine transferase [Plasmodium vivax SaI-1] gi|148802899|gb|EDL44298.1| dimethyladenosine transferase, putative [Plasmodium vivax] Length = 522 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G +IE+G G G +++ L +K+ +E D + +L S P + I DD L++ Sbjct: 273 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVL---SRTMPG-FDFIHDDVLQI 327 Query: 108 DFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 +++ + ++ + +I NLP+ I +++LF + + + E + Q EVG+RI ++ Sbjct: 328 NYKDLSESKATKLTVIGNLPFYITSQILFCLLD---YHHYIEQAIVTIQYEVGQRIVSKV 384 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 N Y LS+L T ++F I F+P PKV + V+ I + + C L LK+I Sbjct: 385 NEKSYSILSILFNLYTSPYLLFKIPSSAFYPVPKVEAAVMKIIFKQSSLNCNLLFLKEIL 444 Query: 227 QEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +F +RRK L+ SLK L + L +LR + L+ F +TN L Sbjct: 445 RHSFQQRRKKLKSSLKPLLAKYSTTKELQLPPSVCHLRPQQLTPPQFVELTNFL 498 >gi|123968460|ref|YP_001009318.1| dimethyladenosine transferase [Prochlorococcus marinus str. AS9601] gi|166221691|sp|A2BR00|RSMA_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123198570|gb|ABM70211.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. AS9601] Length = 274 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 25/281 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K+H KK GQ++L++ IL+KI E + ++EIG G G LT Sbjct: 1 MNSKNHH-----------QKKRFGQHWLVNKKILEKIKEIAVLNQNDFILEIGPGKGALT 49 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RI 121 LL +K+ IE D+ +L D + ++ + Q D L V+ + +I+ I ++ Sbjct: 50 SKLLDSEIKKLHAIELDKDLINLLND-KFNNNDKFSLQQGDILTVNLD---SINKKITKV 105 Query: 122 IANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 IAN+PYNI +L +I T +E + L QK+V +RI +++ SP+ G LSV Sbjct: 106 IANIPYNITGPILDIFIGRLGITRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSVRMQ 165 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKT 236 +K + D+ P F P PKV S+++ F P HL +++ K+ + +F RRK Sbjct: 166 LLSKIKKICDVPPSSFSPPPKVFSSLVVFEPIKNHLRLDISIEKNIDKLLRISFNSRRKM 225 Query: 237 LRQSLKR-LGGE---NLLHQAGIETNLRAENLSIEDFCRIT 273 LR +L L E L + + NLR +++SIE + ++ Sbjct: 226 LRNTLNSILSNEEINELSESSKVCFNLRPQDISIEQWIKLA 266 >gi|325968329|ref|YP_004244521.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28] gi|323707532|gb|ADY01019.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28] Length = 276 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 23/274 (8%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L ++ Y++ +K + Q+F++D +++ I S L+ V+EIG G G LT L Sbjct: 11 EDLMNLIMKYRLRLRKRLSQHFVVDPMVIRDII-SHVPLNS-NVLEIGTGIGILTYYLAK 68 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + + +VI +E D + I + + +Q N + IIQ +AL++ + + +I I++N+PY Sbjct: 69 VTS-QVITVEIDGRLVRIAERVLNQL-NNISIIQGNALEIPWPQV-DI-----IVSNVPY 120 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + L+ I L Q+EV R+ ++ YGRLS++T +++ Sbjct: 121 SITSPLIIRIIREGI-----PRALLTIQREVANRLISKPGGDDYGRLSIITQCNYFVSIL 175 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL-KRL 244 P F+PSP++ S+++ PC +++L+ +T F R + LR L K L Sbjct: 176 NTYPPDSFYPSPEIYSSLVMMTKKE---PCYGDMKALESVTNVLFRHRNRVLRWVLNKYL 232 Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276 G + N L +A I N R L I++ +IT L Sbjct: 233 GSDAVNALMKANINVNARVRQLGIDELVKITEYL 266 >gi|167533147|ref|XP_001748254.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773374|gb|EDQ87015.1| predicted protein [Monosiga brevicollis MX1] Length = 345 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 18/255 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + +++ I + + TV+EIG G GNLT LL G +KV+ E Sbjct: 35 IVFNKDFGQHILKNPLVVQGIIDKAAIKSTDTVLEIGPGTGNLTVKLLEKG-KKVVACEV 93 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L ++ D LK D FF++ +AN+PY I + +F Sbjct: 94 DPRLAAELQKRVMGTPLHRKLHLVMGDVLKADLP-FFDVC-----VANMPYQISSPFVFK 147 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E +R+ A+ Y RLSV T + + + + F Sbjct: 148 IL---LHRPLFRCAVLMFQREFAQRLVAKPGDALYCRLSVNTQLLARVDHVMKVGRNNFR 204 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL------RQSLKRLGGENLL 250 P PKV S+V+ P P P E + + AF ++ KTL + LK L + Sbjct: 205 PPPKVESSVVRIEPRNPPPPVDFEEWDGLLRIAFIRKNKTLAACFHSKSVLKLLESNYRI 264 Query: 251 HQAGIETNLRAENLS 265 A + RA+ S Sbjct: 265 FCAAAQPPRRAQGCS 279 >gi|195108513|ref|XP_001998837.1| GI24187 [Drosophila mojavensis] gi|193915431|gb|EDW14298.1| GI24187 [Drosophila mojavensis] Length = 306 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+++ D LK D FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQGTPMQPKLQVLIGDFLKADLP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E +R+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPINFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|114051271|ref|NP_001039501.1| probable dimethyladenosine transferase [Bos taurus] gi|114149276|sp|Q2KHT8|DIMT1_BOVIN RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|86438246|gb|AAI12887.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Bos taurus] gi|296475843|gb|DAA17958.1| probable dimethyladenosine transferase [Bos taurus] Length = 313 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KVI E D + Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPLASKLQVMVGDVLKADLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|225704090|gb|ACO07891.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss] Length = 306 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 12/230 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV+ E D + Sbjct: 27 LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDGRLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L+I+ D LK + FF++ + NLPY I + +F + Sbjct: 86 ELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VTNLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ P P P + + + AF ++ KTL K E LL + Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLEK 246 >gi|33240213|ref|NP_875155.1| dimethyladenosine transferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|62900571|sp|Q7VCH7|RSMA_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33237740|gb|AAP99807.1| Dimethyladenosine transferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 279 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 124/255 (48%), Gaps = 11/255 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P+K GQ++L D +IL+KI ++ + ++EIG G G LT+ LL + V +E D Sbjct: 7 VPRKRFGQHWLRDDSILEKILLAADLQEEDRILEIGPGRGALTEKLLESNVKLVHGVELD 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + LK + +R + + DAL V I++ +++AN+PYNI LL I Sbjct: 67 AELIVGLKQRFAGQ-SRFTLQEGDALSVSLLPHDGIAAN-KVVANIPYNITGPLLERLIG 124 Query: 140 --ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + ++ L LL QKEV +RI A + +SV K + ++ P F P Sbjct: 125 RLGRSSEVKYQRLVLLVQKEVAKRILALPGQSSFSAMSVRLQLLAKCQSVCEVHPSSFSP 184 Query: 198 SPKVTSTVIHFIP--HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250 PKV S VI P + +E + I Q AF RRK LR +L ++ E L Sbjct: 185 QPKVYSEVIILDPLEKDERLDFLVERRVASIVQIAFLSRRKKLRNTLTKICPLDELEPLA 244 Query: 251 HQAGIETNLRAENLS 265 ++ GI N R + L+ Sbjct: 245 YRQGINLNQRPQELA 259 >gi|255576485|ref|XP_002529134.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223531413|gb|EEF33247.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 350 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 14/201 (6%) Query: 15 SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +HY+ I K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + Sbjct: 19 NHYQGGISFHKSKGQHILKNPLLVDTIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KM 77 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 VI +E D + L+ P NRL++IQ D LK D +F+I +AN+PY I Sbjct: 78 VIAVELDPRMVLELQRRFQGTPMSNRLKVIQGDVLKTDLP-YFDI-----CVANIPYQIS 131 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F ++ P + ++FQ+E R+ AQ Y RLSV T + + + + Sbjct: 132 SPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLYARVSHLLKV 188 Query: 191 SPHVFFPSPKVTSTVIHFIPH 211 + F P PKV S+V+ P Sbjct: 189 GKNNFRPPPKVDSSVVRIEPR 209 >gi|158312623|ref|YP_001505131.1| dimethyladenosine transferase [Frankia sp. EAN1pec] gi|158108028|gb|ABW10225.1| dimethyladenosine transferase [Frankia sp. EAN1pec] Length = 291 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 33/290 (11%) Query: 14 LSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 L+H + P K GQNFL+D N ++++ + +E+G G G+LT L+T A Sbjct: 10 LAHALDLRPTKRRGQNFLVDPNTVRRLVRLAAVGPDDVALEVGPGLGSLTLGLVTEAAAV 69 Query: 73 VIVIEKDQQFFPIL---------KDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRII 122 V P+L + + RL +++ D L+V+ +++P + Sbjct: 70 AAVEVD-----PVLAAALPVTAAARLPAAVAARLHVVEADGLRVEPSDLPPAVAAPTVLA 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ LL + + +P L ++ Q EV +R+T+ YG SV W Sbjct: 125 ANLPYNVAVPLLLGLL--ERFPSIRRGL-VMVQAEVADRLTSPPGGRIYGVPSVKLAWYA 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 +A + VF+P P V S ++ F P L++ AF +RRKTLR Sbjct: 182 QARPAGAVPRPVFWPQPNVDSGLVAFT--RRAAPPADAGLRREVFAAVDAAFAQRRKTLR 239 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN---ILTDNQ 280 +L G E L AG++ R E L +E F R+ IL +Q Sbjct: 240 TALAPWAGSPARAEQLARAAGVDPGARGETLDVEAFARLAQQARILPADQ 289 >gi|194745790|ref|XP_001955370.1| GF16271 [Drosophila ananassae] gi|190628407|gb|EDV43931.1| GF16271 [Drosophila ananassae] Length = 306 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 12/239 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + T + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKTRIHTEVQKQGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK + FF++ IA Sbjct: 68 LE-KAKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|195341093|ref|XP_002037146.1| GM12757 [Drosophila sechellia] gi|194131262|gb|EDW53305.1| GM12757 [Drosophila sechellia] Length = 306 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L ++ D LK + FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPLQPKLHVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E ER+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|322823660|gb|EFZ29364.1| ribosomal RNA adenine dimethylase family protein, putative [Trypanosoma cruzi] Length = 344 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 14/209 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 LKT S ++ K GQ+ L + ++ I E + V+EIG G GNLT+ LL + Sbjct: 51 LKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV- 109 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 ++KVI E D + L P ++L++I+ + L +F F + +AN+PY Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F + P ++ L+FQ+E R+ AQ + Y RLSV + + + + Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 IS + F P PKV S+VI P +P P Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPK-HPAP 247 >gi|317011563|gb|ADU85310.1| dimethyladenosine transferase [Helicobacter pylori SouthAfrica7] Length = 271 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLRLLERYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRERLK--KQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL +++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFGAKDSQ---NALSVLAHAIGNVSLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240 P PKV S+V I L P E+L+K + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTPTLSFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|195036390|ref|XP_001989653.1| GH18676 [Drosophila grimshawi] gi|193893849|gb|EDV92715.1| GH18676 [Drosophila grimshawi] Length = 306 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+++ D LK + FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E +R+ A+ Y RLSV T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSVNTQLLARVDMLMKVGKNNFK 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|71425341|ref|XP_813086.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi strain CL Brener] gi|70877938|gb|EAN91235.1| ribosomal RNA adenine dimethylase family protein, putative [Trypanosoma cruzi] Length = 344 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 14/209 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 LKT S ++ K GQ+ L + ++ I E + V+EIG G GNLT+ LL Sbjct: 51 LKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQ-A 109 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 ++KVI E D + L P ++L++I+ + L +F F + +AN+PY Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F + P ++ L+FQ+E R+ AQ + Y RLSV + + + + Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 IS + F P PKV S+VI P +P P Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPK-HPAP 247 >gi|301761816|ref|XP_002916330.1| PREDICTED: probable dimethyladenosine transferase-like [Ailuropoda melanoleuca] Length = 313 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KVI E D + Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPLASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|281348842|gb|EFB24426.1| hypothetical protein PANDA_004390 [Ailuropoda melanoleuca] Length = 298 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KVI E D + Sbjct: 32 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 90 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 91 ELHKRVQGTPLASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 141 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 142 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 201 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 202 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 261 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 262 IIIPEDFSIAD--KIQQILT 279 >gi|67464821|ref|XP_648602.1| dimethyladenosine transferase [Entamoeba histolytica HM-1:IMSS] gi|56464806|gb|EAL43214.1| dimethyladenosine transferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 295 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 13/248 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I ++I +++ V+EIG G GNLT +L +K+I IE D + Sbjct: 14 KSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPF-CKKLIAIEIDPRM 72 Query: 83 FPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 LK S + +LEIIQ D LKV+ +F++ ++N PY+I + L+F ++ Sbjct: 73 AAELKKRVSVTDYVKKLEIIQGDFLKVELP-YFDVC-----VSNTPYSISSPLVFKLLNH 126 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + S L+FQ+E R+ A+ P Y RLSV T + + + F P PK Sbjct: 127 R---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFKPPPK 183 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S+V+ IP P L + F ++ KTL SL R+ + + + + Sbjct: 184 VESSVVRMIPVKPAPPLNLVEFDGFLRICFLRKHKTL-SSLFRISSVLEVMEKNLRIIAK 242 Query: 261 AENLSIED 268 N+ I++ Sbjct: 243 IRNIPIDE 250 >gi|315274531|ref|ZP_07869435.1| dimethyladenosine transferase [Listeria marthii FSL S4-120] gi|313615841|gb|EFR89065.1| dimethyladenosine transferase [Listeria marthii FSL S4-120] Length = 167 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 10/157 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK + FL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLXXXFLIDTNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N + ++ D LK D E +F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVRVVHGDVLKADVEEVIAQQFAKPELPLKIVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 + T ++ + D P +S+T + QKEV +RI+A Sbjct: 132 YVTTPIILKLLH-DNIP--ADSMTFMLQKEVADRISA 165 >gi|114600099|ref|XP_001136488.1| PREDICTED: dimethyladenosine transferase isoform 2 [Pan troglodytes] Length = 300 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|126315217|ref|XP_001366147.1| PREDICTED: similar to Dimethyladenosine transferase [Monodelphis domestica] Length = 309 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 17/260 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 30 LGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 88 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 89 ELHKRVQGTPQASKLQVMVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 139 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 140 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 199 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 200 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK-NYRIHCSVH 258 Query: 263 NLSI-EDFC---RITNILTD 278 N++I EDF +I IL D Sbjct: 259 NIAIPEDFSIADKIQKILMD 278 >gi|317490258|ref|ZP_07948746.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA] gi|325833365|ref|ZP_08165814.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1] gi|316910752|gb|EFV32373.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA] gi|325485289|gb|EGC87758.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1] Length = 347 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/334 (24%), Positives = 134/334 (40%), Gaps = 80/334 (23%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + + K +GQNFL++ IL+KI + V+E+G G G LT LL A Sbjct: 14 RAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLAPDDYVLEVGPGIGTLTIALLK-SA 72 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL---KVDF------------------ 109 +V+ +E+D +L + + +R ++ DAL DF Sbjct: 73 GRVLSVERDPDLPAVLVETLAPWSDRFALLNKDALDLCSADFQSAEPLDAAASRGARSRG 132 Query: 110 ----------------------EKFFNISSPIRI-----IANLPYNIGTRLLFNWISADT 142 E +++ P+R+ +ANLPY + ++ ++ Sbjct: 133 EAEGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAVAATVVLDYFEQFA 192 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 ES T++ QKEV +R+ A + +YG +V + F + P FFP P+V Sbjct: 193 S---LESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFAVGPGNFFPPPRVE 249 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEA-----------FGKRRKTLRQSLKR-LGGEN-- 248 S V+ LN P + + +A F RRKTL S K G Sbjct: 250 SAVL----RLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCKTYFAGRGPQ 305 Query: 249 ----------LLHQAGIETNLRAENLSIEDFCRI 272 L +AGI+ LR E L + +F R+ Sbjct: 306 GAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339 >gi|291395424|ref|XP_002714103.1| PREDICTED: dimethyladenosine transferase [Oryctolagus cuniculus] Length = 308 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 19/262 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+ L + ++ I E + V+E+G G GN+T LL A+KVI E D + Sbjct: 27 KGIGQHILKNPLVVNSIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRL 85 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L P ++L+++ D LK + FF+ +ANLPY I + +F + Sbjct: 86 VAELHKRVQGTPLASKLQVMVGDVLKTELP-FFDTC-----VANLPYQISSPFVFKLL-- 137 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PK Sbjct: 138 -LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPK 196 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGI 255 V S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 197 VESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSV 256 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 257 HNIIIPEDFSIAD--KIQQILT 276 >gi|297675337|ref|XP_002815639.1| PREDICTED: probable dimethyladenosine transferase-like isoform 1 [Pongo abelii] Length = 313 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I +ILT Sbjct: 264 IIIPEDFSIAD--KIQHILT 281 >gi|159462946|ref|XP_001689703.1| dimethyladenosine transferase [Chlamydomonas reinhardtii] gi|158283691|gb|EDP09441.1| dimethyladenosine transferase [Chlamydomonas reinhardtii] Length = 352 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 17/240 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +++ I + +G V+EIG G GNLT LL A+KVI +E D + Sbjct: 43 KSKGQHILRNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAVELDPRM 101 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ P N L+II D ++V+ +F++ +AN+PYNI + L F ++ Sbjct: 102 VLELQRRVQGTPYANNLQIIHGDFMRVELP-YFDLC-----VANIPYNISSPLTFKLLAH 155 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + + +++Q E R+ A+ Y RL+V T + + + + + F P PK Sbjct: 156 R---PAFRAAVIMYQHEFAMRLVAKAGDNLYSRLAVNTQLLARVSHLLKVGKNNFRPPPK 212 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S+V+ P P P + + F ++ KTL K+ N L +ETN R Sbjct: 213 VDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTLGAIFKQ---TNTLQ--ALETNWR 267 >gi|220912054|ref|YP_002487363.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6] gi|219858932|gb|ACL39274.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6] Length = 290 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 28/283 (9%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K +GQNF++D N +++I ++G TV+E+ L Sbjct: 15 ASDIRRLAGEIGVRPTKTLGQNFVIDGNTIRRIVAAAGVGADETVLEV-----GPGLGSL 69 Query: 67 TLGARKVIVIEKDQQFFPIL-----KDISSQHP---NRLEIIQDDALKV-DFEKFFNISS 117 TLG + P+L ++ P +++ DA+KV D Sbjct: 70 TLGLLDAAAAVVAVEIDPVLAAKLPATVAEWRPAAVGNFHLVEADAMKVTDLP-----VE 124 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P ++ANLPYN+ ++ + + + +P L ++ Q EV +R+ A S YG SV Sbjct: 125 PTALVANLPYNVAVPVVLHLL--EHFPSLQHGLVMV-QDEVADRLAAGPGSKTYGVPSVK 181 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKT 236 + W + I +VF+P+PK+ S ++ F P + + + AF +RRKT Sbjct: 182 SAWYGQMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATSATRQQVFAVIDAAFAQRRKT 241 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 LR +L G E L AG++ R E + I F RI Sbjct: 242 LRAALSGWAGGGAEAERCLVAAGVDPTARGEVIDIAAFARIAE 284 >gi|326934876|ref|XP_003213509.1| PREDICTED: probable dimethyladenosine transferase-like [Meleagris gallopavo] Length = 385 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E + V+E+G G GNLT +L +KVI E D + Sbjct: 107 GQHILKNPLVVNSIIEKAALRRTDIVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 165 Query: 86 LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ + N+LEI D LK D FF+ +ANLPY I + +F + Sbjct: 166 LQKRVQGTCLANKLEIKVGDVLKTDLP-FFDA-----CVANLPYQISSPFVFKLL---LH 216 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E R+ A+ S Y RLS+ T + + + + F P PKV S Sbjct: 217 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 276 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-HQAGIETNLR-- 260 +V+ P P P + + + AF ++ KTL + K E LL H I +L Sbjct: 277 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDHNYRIHCSLHNA 336 Query: 261 --AENLSIEDFCRITNILTD 278 EN I + +I +L D Sbjct: 337 EIPENFKISE--KIQTVLKD 354 >gi|67463766|pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase gi|67463767|pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 6 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 64 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 65 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 116 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 175 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 176 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 235 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 236 IIIPEDFSIAD--KIQQILT 253 >gi|289596434|ref|YP_003483130.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] gi|289534221|gb|ADD08568.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] Length = 243 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 26/249 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNFL++ I I + + V+EIG G G LT LL +V IE D+ L Sbjct: 11 QNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLE--KCEVYAIEIDKTLCEYL 68 Query: 87 KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I RL +I DALKV+F KF +I+AN+PY+I + LLF + + Sbjct: 69 NIIFQDDIKDGRLHLICGDALKVNFPKFN------KIVANIPYHISSPLLFKILEYE--- 119 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 +E L+ Q E ER+ A+ S YGRLSV+ + +A ++ + F P P+V S Sbjct: 120 --FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRVDSA 177 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264 ++ I + + L + ++ F +RRK +R N+L + + R E L Sbjct: 178 IVK-ITKKDRFCYDKDKLNEFVRKLFEQRRKKIR---------NILGEVPY-GDRRVEEL 226 Query: 265 SIEDFCRIT 273 S E+ C + Sbjct: 227 SPEEICEVV 235 >gi|254166890|ref|ZP_04873744.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] gi|197624500|gb|EDY37061.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] Length = 238 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 26/249 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNFL++ I I + + V+EIG G G LT LL +V IE D+ L Sbjct: 6 QNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLE--KCEVYAIEIDKTLCEYL 63 Query: 87 KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I RL +I DALKV+F KF +I+AN+PY+I + LLF + + Sbjct: 64 NIIFQDDIKDGRLHLICGDALKVNFPKFN------KIVANIPYHISSPLLFKILEYE--- 114 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 +E L+ Q E ER+ A+ S YGRLSV+ + +A ++ + F P P+V S Sbjct: 115 --FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRVDSA 172 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264 ++ I + + L + ++ F +RRK +R N+L + + R E L Sbjct: 173 IVK-ITKKDRFCYDKDKLNEFVRKLFEQRRKKIR---------NILGEVPY-GDRRVEEL 221 Query: 265 SIEDFCRIT 273 S E+ C + Sbjct: 222 SPEEICEVV 230 >gi|225023525|ref|ZP_03712717.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC 23834] gi|224943698|gb|EEG24907.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC 23834] Length = 134 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 2/130 (1%) Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 + + QKEV ER+ A+ S +GRLSV+ + + + D+ P F P+PKV S V+ I Sbjct: 1 MHFMLQKEVVERMVAEPGSNDFGRLSVMLQYFFEMEKLLDVPPEAFSPAPKVDSAVVRLI 60 Query: 210 PHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267 P I E + ++AF +RRKT+R +LK L +N L AGI RAE+++ E Sbjct: 61 PAKYRIGQAQDFEQFAALVKQAFHQRRKTIRNNLKGLADDNDLQAAGISPQERAEHIAPE 120 Query: 268 DFCRITNILT 277 + + N+L Sbjct: 121 KYVALANLLA 130 >gi|332233664|ref|XP_003266024.1| PREDICTED: probable dimethyladenosine transferase [Nomascus leucogenys] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|125774831|ref|XP_001358667.1| GA11224 [Drosophila pseudoobscura pseudoobscura] gi|195145334|ref|XP_002013651.1| GL24250 [Drosophila persimilis] gi|54638406|gb|EAL27808.1| GA11224 [Drosophila pseudoobscura pseudoobscura] gi|194102594|gb|EDW24637.1| GL24250 [Drosophila persimilis] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L A+KVI E Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRPTDVVLEIGPGTGNMTVRMLE-KAKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+I+ D LK + FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPMQPKLQILIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E +R+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPIFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|148907015|gb|ABR16651.1| unknown [Picea sitchensis] Length = 346 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 14/219 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + +++ I + +G V+EIG G GNLT LL + A+KVI +E D + Sbjct: 24 QKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGTGNLTMKLLEV-AKKVIAVELDPR 82 Query: 82 FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ + RL++IQ D LK + +F++ +AN+PY I + L F +S Sbjct: 83 MVLELQRRVQGTSSAIRLQVIQGDVLKSELP-YFDVC-----VANIPYQISSPLTFKLLS 136 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + ++FQ+E R+ A+ Y RLSV T + + + + + F P P Sbjct: 137 ---HRPIFRCAIIMFQREFAMRLVAKPGDNLYCRLSVNTQLLARVSHLLKVGKNNFRPPP 193 Query: 200 KVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237 KV S+V+ P NP+ P + + + F ++ KTL Sbjct: 194 KVDSSVVRIEPR-NPLPPISFKEWDGMVRLCFNRKNKTL 231 >gi|302844675|ref|XP_002953877.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f. nagariensis] gi|300260689|gb|EFJ44906.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f. nagariensis] Length = 384 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 12/217 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +++ I + +G V+EIG G GNLT LL A+KVI IE D + Sbjct: 37 KSKGQHILKNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAIELDPRM 95 Query: 83 FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + + N L+II D ++V+ +F++ +AN+PYNI + L F ++ Sbjct: 96 VLELQRRVQGTAYANNLQIIHGDFMRVELP-YFDLC-----VANIPYNISSPLTFKLLAH 149 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + + +++Q E R+ A+ Y RL+V T + + + + + F P PK Sbjct: 150 R---PAFRAAVIMYQHEFAMRLVAKPGDQLYSRLAVNTQLLARVSHLLKVGKNNFRPPPK 206 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S+V+ P P P + + F ++ KTL Sbjct: 207 VDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTL 243 >gi|7657198|ref|NP_055288.1| probable dimethyladenosine transferase [Homo sapiens] gi|114600097|ref|XP_517743.2| PREDICTED: probable dimethyladenosine transferase isoform 3 [Pan troglodytes] gi|27151492|sp|Q9UNQ2|DIMT1_HUMAN RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|4050050|gb|AAC97955.1| putative dimethyladenosine transferase [Homo sapiens] gi|14790071|gb|AAH10874.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Homo sapiens] gi|119571770|gb|EAW51385.1| dimethyladenosine transferase, isoform CRA_b [Homo sapiens] gi|123981158|gb|ABM82408.1| dimethyladenosine transferase [synthetic construct] gi|123995987|gb|ABM85595.1| dimethyladenosine transferase [synthetic construct] gi|123996331|gb|ABM85767.1| dimethyladenosine transferase [synthetic construct] gi|307684642|dbj|BAJ20361.1| DIM1 dimethyladenosine transferase 1-like [synthetic construct] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|149732873|ref|XP_001493943.1| PREDICTED: similar to Dimethyladenosine transferase [Equus caballus] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 118/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KVI E D + Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPLAGKLQVMVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQRLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|296194498|ref|XP_002806669.1| PREDICTED: LOW QUALITY PROTEIN: probable dimethyladenosine transferase-like [Callithrix jacchus] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|326433493|gb|EGD79063.1| dimethyladenosine transferase [Salpingoeca sp. ATCC 50818] Length = 310 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 36/281 (12%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++ I + + TV+EIG G GNLT LL A K+I E D + Sbjct: 32 KDFGQHILKNPLVVTGIIDKANIRSSDTVLEIGPGTGNLTIKLLE-KAGKLIAYEVDSRL 90 Query: 83 F-PILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 ++K +S + + ++L ++ DA+K F +AN+PY I + +F + Sbjct: 91 ADELVKRVSKTMYKSKLHLVLGDAIKNPLPAF------DVCVANMPYQISSPFVFKILK- 143 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L+FQ+E R+ A+ HY RLSV + + +S + F P PK Sbjct: 144 --HRPLFRCAVLMFQREFALRLVAKPGEEHYCRLSVNAQLLSNIEHVMKVSKNNFRPPPK 201 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR-------------QSLKRLGGE 247 V S+V+ +PH L + + AF ++ +TL Q+ K+LGGE Sbjct: 202 VESSVVRIVPHRPAPDVDLSEFDGLLRIAFERKNRTLAAAFKKKGVVALLLQNFKQLGGE 261 Query: 248 ----------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 ++L ++ + R + L++ DF R+ D Sbjct: 262 PPEDFKQFIVDVLTESDYASK-RPQQLAVADFLRLLKAFND 301 >gi|254456784|ref|ZP_05070212.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1] gi|207085576|gb|EDZ62860.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1] Length = 258 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 124/257 (48%), Gaps = 18/257 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK GQNFL D +L+KI E+ D V+EIG G G+LT+ L+ + + V E Sbjct: 6 VVAKKKFGQNFLKDEAVLRKIIEAMPKSDN-KVVEIGPGLGDLTKYLVDV--KSVEAFEV 62 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D +L+ + RL I D L+ I P ++ANLPY I T ++ Sbjct: 63 DTDLCKLLQSTFKEEIATKRLHINCGDVLQAWQSSL--IDEPYDLVANLPYYIATNIILK 120 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P +++ ++ Q EV E+ A + +G LSV+T +A ++ + P F Sbjct: 121 ALA----DPMCKNILVMVQLEVAEKFCAHEGEKVFGSLSVITQSVGEAHIVMQVPPTAFE 176 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P PK+ S V + + E L ++ AF + RKTL ++L +++L + E Sbjct: 177 PPPKIDSAVFLIRKNADRSDEDFEGLLRV---AFKQPRKTLMKNLSANYEKSILQEVFNE 233 Query: 257 TNL----RAENLSIEDF 269 +L R +S +D+ Sbjct: 234 LSLALTIRPHQVSTQDY 250 >gi|291453553|ref|ZP_06592943.1| dimethyladenosine transferase dimethyltransferase [Streptomyces albus J1074] gi|291356502|gb|EFE83404.1| dimethyladenosine transferase dimethyltransferase [Streptomyces albus J1074] Length = 287 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 18/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 14 IRELATALGVRPTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGPGLGSLTLGLLET- 72 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANL 125 A+ V +E D L + ++ P R ++ DAL+V +P ++ANL Sbjct: 73 AQHVTAVEIDDTLAAALPATVEARLPARAAHFALVHSDALRV---TELPGPAPTALVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + +P +L ++ Q EV +R+ A S YG SV W + Sbjct: 130 PYNVAVPVLLHML--EHFPTIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK- 242 I +VF+P+P V S ++ + P E + + AF +RRKTLR +L Sbjct: 187 RAGAIGRNVFWPAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAALSG 246 Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 E L AG+ R E+L++E+F I Sbjct: 247 WAGSAAAAEAALVAAGVSPQARGESLTVEEFAAIAE 282 >gi|257466334|ref|ZP_05630645.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917491|ref|ZP_07913731.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC 25563] gi|313691366|gb|EFS28201.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC 25563] Length = 271 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 124/267 (46%), Gaps = 23/267 (8%) Query: 22 KKYMGQNFLL-DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL IL KI E S ++EIG G G LT++LL A+ V+ IE D+ Sbjct: 6 KKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQ-EAKSVLNIEIDE 64 Query: 81 QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 PIL K + RL + D L+V+F ++ + +++AN+PY I + ++ I Sbjct: 65 DLKPILQKKFGNIEKYRL--VMGDVLEVNFAEY--MQERTKVVANIPYYITSPIIQKIIE 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + ++ L+ QKEVGERI A+K L++ + K +F I F P P Sbjct: 121 NRS---LIQAAFLMVQKEVGERICAKKGKERSA-LTLSVEYFAKPEYLFTIPKEYFTPIP 176 Query: 200 KVTSTVIHFIPH-----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENL 249 KV S I +P L K + F +RK L + LG + Sbjct: 177 KVDSAFIGIRMKKEEEIAKQVPETL--FFKYVKAGFFNKRKNLANNFLALGFTKAEIKEK 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L GI RAENLS+ED+ + L Sbjct: 235 LATLGISETERAENLSLEDWFSVIKAL 261 >gi|328774301|gb|EGF84338.1| hypothetical protein BATDEDRAFT_22291 [Batrachochytrium dendrobatidis JAM81] Length = 306 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 12/222 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+ L + ++ I + + V+E+G G GN+T +L A+K IV+E D + Sbjct: 23 KSLGQHILKNPLVVNGIVDKACIKATDVVLEVGPGTGNVTVKILE-KAKKTIVVEMDPRL 81 Query: 83 FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + + +LE+I D LKVD +F+I I+N PY I + L F + Sbjct: 82 AAELTKRVRGTAEQRKLEVIVGDFLKVDLP-YFDIC-----ISNTPYQISSSLTFKLLQH 135 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P W L+FQ+E R+ A+ Y RLS K + + + F P PK Sbjct: 136 R---PLWRCSILMFQREFALRLVAKPGDALYCRLSANVQLLAKVDHVMKVGKNNFRPPPK 192 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S+V+ PH P P + + + FG++ +T+ + K Sbjct: 193 VESSVVRIEPHNPPPPVNFDEWDGLLRILFGRKNRTVAANFK 234 >gi|304372921|ref|YP_003856130.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma hyorhinis HUB-1] gi|304309112|gb|ADM21592.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma hyorhinis HUB-1] gi|330723491|gb|AEC45861.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Mycoplasma hyorhinis MCLD] Length = 257 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 15/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D ++ KI E + S D +EIG G G +T LL A+ ++ E Sbjct: 4 IQAKKKFGQNFLKDDFVINKIIELANSQDE-DALEIGPGTGAITIPLLE-SAKSLLAYEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L++ ++ + +D L+ D + ++P ++ANLPY I +++LF Sbjct: 62 DKDLIVCLEN--KIKSSKFMLKNEDFLEADLD----FTTPKILVANLPYYITSQILFKVF 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++S+ ++ Q+EV +RI A++ + + +LS+ I P F P Sbjct: 116 ENVNK---FKSMLIMVQEEVADRIVAKEKTSAFSKLSLACQLVADVKKELKILPSSFSPQ 172 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 PKV S ++ F N P ++ T++ F +RKT +L + + + ++ N Sbjct: 173 PKVNSALVSFKFKKNLNPEYIKGFLDFTKKCFSMKRKTFYNNLSTFLNQEKIKELYVKFN 232 Query: 259 L----RAENLSIEDFCRITNILTDN 279 L R + +S+ + +I + + ++ Sbjct: 233 LNYNIRPQQISLNQYIQIYDFIKNS 257 >gi|257126070|ref|YP_003164184.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b] gi|257050009|gb|ACV39193.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b] Length = 287 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 24/271 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D N+ I + + + V+EIG G G LT+ L+ ++ + E D Sbjct: 23 KKKYGQNFLNDSNLSDDILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFLTAFEIDDD 81 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP-IRIIANLPYNIGTRLLFN 136 P L + Q ++I D ++VD ++FF N S ++++AN+PY I + ++ Sbjct: 82 LIPFL-NKKFQKKENFKLIHQDFMEVDLKEFFENEENKSKKNVKVVANIPYYITSPIINK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT---GWRTKATMMFDISPH 193 + + + + L+ QKEV ERI +Q PH +S+LT + + +F + Sbjct: 141 LLE---YRENIDEIYLMVQKEVAERIASQ---PHSKNMSLLTHAVQFYAETEYLFTVPKE 194 Query: 194 VFFPSPKVTSTVIH---FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247 F P PKV S + E K +EAF +RK++ +L +LG Sbjct: 195 KFDPVPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLMKLGFSKDV 254 Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITNIL 276 N L + G R E S+++F IL Sbjct: 255 VGNALEKVGKTRLARTEEFSVQEFIDFIGIL 285 >gi|242210765|ref|XP_002471224.1| predicted protein [Postia placenta Mad-698-R] gi|220729783|gb|EED83652.1| predicted protein [Postia placenta Mad-698-R] Length = 322 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 13/256 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +H I + GQ+ L + + I +++ V+E+G G GNLT +L A+ V Sbjct: 33 AHNPIFNTERFGQHILKNPQTAQSIVDTANLRPTDKVLEVGPGTGNLTVRILE-KAKHVT 91 Query: 75 VIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +E D + L P +LEI+ D +K +F++ I+N PY I + Sbjct: 92 AVEMDPRMAAELTKRVQGKPEQRKLEIMIGDFVKATL-PYFDVC-----ISNTPYQISSP 145 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+F +S P + + L+FQ+E R+ A+ S + RLS K ++ +S Sbjct: 146 LIFRLLSHR---PLFRTAILMFQREFAMRLVARPGSEMWSRLSANVQLYAKVDLVMHVSK 202 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 + F P PKV S+VI +P P P + + FG+R K + + + G +L + Sbjct: 203 NNFRPPPKVESSVIRLVPRDPPPPVEFGEFDGLARIVFGRRNKMIHANFQAKGVMEML-E 261 Query: 253 AGIETNLRAENLSIED 268 + T N+ IED Sbjct: 262 SNWRTWASVNNVMIED 277 >gi|170097177|ref|XP_001879808.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645211|gb|EDR09459.1| predicted protein [Laccaria bicolor S238N-H82] Length = 290 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 13/253 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQ+ L + +KI +++ V+E+G G GNLT +L A+ V +E D + Sbjct: 12 GQHILKNPATAQKIVDAANLKPTDKVMEVGPGTGNLTVKILE-KAKHVTAVEMDPRMAAE 70 Query: 85 ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++K + R LE+I D +KVD +F + I+N PY I + L+F +S Sbjct: 71 VIKRVQGTPEQRKLEVIIGDFVKVDM-PYFEVC-----ISNTPYQISSPLVFRLLSHR-- 122 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ+E R+ A+ + + RLS K + ++S + F P P+V S Sbjct: 123 -PLFRVAILMFQREFAMRLVARPGTALWSRLSANVQLYAKVDNIINVSRNDFRPPPQVES 181 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +VI +P P P E + + F + KT+R + + G +L Q T L ++ Sbjct: 182 SVIRLVPIDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ-NRRTWLAMQD 240 Query: 264 LSIEDFCRITNIL 276 + ++D I +L Sbjct: 241 MPVDDTTSINTLL 253 >gi|296140913|ref|YP_003648156.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM 20162] gi|296029047|gb|ADG79817.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM 20162] Length = 310 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 130/283 (45%), Gaps = 26/283 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D N ++KI ++G +E+G G G+LT LL Sbjct: 18 IRGLAGQLSVRPTKQLGQNFVHDPNTVRKIVAAAGVRPDDIALEVGPGLGSLTLALLDA- 76 Query: 70 ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-----SPIR 120 A V +E D QQ + D + + L +I +DALKV E+ + +P Sbjct: 77 AAAVTAVEIDPVLAQQLPQTVGDRAPELAGNLTVIGEDALKVTGEQLVAATGRDRGAPTV 136 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ +L + ++ P ++ ++ Q EV +R+ A S YG SV + Sbjct: 137 LVANLPYNVAVPVLLHLLAEV---PTLRTVLVMVQLEVADRLAAGPGSRVYGVPSVKAAY 193 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCLESLKKITQEAFGKRRK 235 + VF+P P V S ++ H +P +P L AF +RRK Sbjct: 194 YGAVRKAGTVGRAVFWPEPNVESGLVRIDLH-DPADRPDVPRA--DLWAAIDGAFAQRRK 250 Query: 236 TLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 TLR +L G L AG++ R E L+++ F I Sbjct: 251 TLRAALSGWAGSPALAEEALVAAGVDPRERGEKLTVDQFAAIA 293 >gi|225717294|gb|ACO14493.1| Probable dimethyladenosine transferase [Esox lucius] Length = 306 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 12/230 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV+ D + Sbjct: 27 LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACGLDGRLVA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L+I+ D LK + FF++ +ANLPY I + +F + Sbjct: 86 ELQKRVQCTPMQAKLQILVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ P P P + + + AF ++ KTL K E LL + Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLEK 246 >gi|312085450|ref|XP_003144684.1| hypothetical protein LOAG_09107 [Loa loa] gi|307760150|gb|EFO19384.1| hypothetical protein LOAG_09107 [Loa loa] Length = 276 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 12/190 (6%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKV 107 TV E+G+G GNLT +L+ A+KVI E D++ LK I + H +LE+ Q D +K+ Sbjct: 22 TVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAELKKRVIGTSHQQKLEMKQGDVIKM 80 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 ++ FF++ IANLPY I + +F + P + L+FQKE +R+ A+ Sbjct: 81 EWP-FFDVC-----IANLPYQISSPFVFRMLLQRPLPRY---AVLMFQKEFADRLLAKPG 131 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 S Y RLSV + + + + F P PKV S V+ P P + + + Sbjct: 132 SKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDSAVVRIAPRNPPPQINFQEWDNLLR 191 Query: 228 EAFGKRRKTL 237 F ++ KTL Sbjct: 192 IVFLRKNKTL 201 >gi|109946738|ref|YP_663966.1| dimethyladenosine transferase [Helicobacter acinonychis str. Sheeba] gi|122973457|sp|Q17ZF9|RSMA_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|109713959|emb|CAJ98967.1| dimethyladenosine transferase [Helicobacter acinonychis str. Sheeba] Length = 271 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K I+ Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61 Query: 79 D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ LK + P LE+ + DAL F P +I+NLPY I TRL+ N Sbjct: 62 SLCEKMRERLK--KQKKPFELELAEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P L ++ QKEV + + + LSVL T++FD+ P F Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCTKDSQ---NALSVLAHAIGNVTLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIH-------------FIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQS 240 PSPKV S++ IP L+ + E+L+ + F RKTL + Sbjct: 167 PSPKVFSSMFEVIKEPLKEKALASLIPTLSFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|296394635|ref|YP_003659519.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985] gi|296181782|gb|ADG98688.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985] Length = 285 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 17/276 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + ++ P K +GQNF+ D +++I ++G +V+EIG G G+LT LL + Sbjct: 15 IRELAERLEVRPTKRLGQNFVHDPGTIRRIVAAAGLRPQDSVLEIGPGLGSLTLGLLDV- 73 Query: 70 ARKVIVIEKDQQFFPILKD-ISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A V +E D + L I+++ P R +++ DAL + ++P ++ANLPY Sbjct: 74 AHDVTAVEVDGKLADALSSTIAARAPGRQFHLVEKDALGLTGADL--PAAPTALVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ + ++ P ++ ++ Q EVG+R+ A+ + G ++ T + A + Sbjct: 132 NVAVPVFLRALAEL---PSIDNALVMVQLEVGQRLAAKPGAREGGVPTLKTAFYGHAELA 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKR 243 ISP VF+P P V S ++ F + E ++ + AF RRKTL LK Sbjct: 189 GKISPEVFWPQPNVDSALVRFTRRADSPWATDEHTRRAVFALIDAAFASRRKTLGAVLKG 248 Query: 244 LGG--ENL---LHQAGIETNLRAENLSIEDFCRITN 274 G E L L AG+ + R E L I F + + Sbjct: 249 WAGSPEELRRRLEAAGVPGSARGEELHIGQFVALAS 284 >gi|34556519|ref|NP_906334.1| dimethyladenosine transferase [Wolinella succinogenes DSM 1740] gi|34482233|emb|CAE09234.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE 16S RRNA DIMETHYLASEEC 2.1.1 [Wolinella succinogenes] Length = 239 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 15/234 (6%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALK 106 + V+E+G G G+LT LL G V+ E D P L+ + + R EI D ++ Sbjct: 1 MGVVEVGPGLGDLTNKLL--GFWDVLAFEVDTDLRPHLEKRFQKELSIGRFEIRFGDVME 58 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 EK I P +++NLPY + T ++ + P SL ++ QKEV E+ A+ Sbjct: 59 EWREKRSLIPRPYVLVSNLPYYVATAIILKALK----DPMCHSLVVMVQKEVAEKFCARS 114 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 + LSV+T ++ ++F++ P F P+PKVTS V + H + LE L ++ Sbjct: 115 GESDFSALSVITESYGESELLFEVPPQAFEPAPKVTSAVFRVVKHHGEVAEGLEELLRL- 173 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL----RAENLSIEDFCRITNIL 276 AF RK + ++L + L +A NL RA L + R+ IL Sbjct: 174 --AFSAPRKKVLKNLASGYETSRLKEAFGALNLKEEARAHELETSHYHRLLKIL 225 >gi|257051708|ref|YP_003129541.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940] gi|256690471|gb|ACV10808.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940] Length = 292 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 118/267 (44%), Gaps = 36/267 (13%) Query: 27 QNFLLDLNILKKIA--ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 Q+FL+D +L +I + +D V+EIGAG G LT LL + A V +E+D Sbjct: 34 QHFLVDDRVLDRIPTYATEAGIDLGHVLEIGAGNGALTDRLLAV-ADWVTAVERDPDLAA 92 Query: 85 ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ + RL +I+ DAL+VD + I+NLPY + +LF + Sbjct: 93 FLRTEFADAIEAGRLTVIEGDALEVDLPDY------TASISNLPYGASSEILFRLL---- 142 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P + L + Q E +R+ A S YGRLSV G ++ + P F P P V Sbjct: 143 --PAGKPLIAMVQAEFADRMAADPGSDDYGRLSVTAGHYADVEVVEPVPPEAFSPPPAVD 200 Query: 203 STVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET---- 257 S ++ +P N + + F +RRKT+R ++ N H +G++ Sbjct: 201 SALVRALPREPNYTVPDDDFFLGFVKAVFTQRRKTVRNGIR-----NTAHISGLDDPDAV 255 Query: 258 ---------NLRAENLSIEDFCRITNI 275 RA +LS DF + ++ Sbjct: 256 VDAADEELLRKRAGDLSPTDFAELASL 282 >gi|118103858|ref|XP_424746.2| PREDICTED: similar to DIMT1L protein [Gallus gallus] Length = 259 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 110/237 (46%), Gaps = 13/237 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E + V+E+G G GNLT +L +KVI E D + Sbjct: 23 GQHILKNPLVVNSIIEKAALRRTDVVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 81 Query: 86 LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ + N+LEI D LK + FF+ +ANLPY I + +F + Sbjct: 82 LQKRVQGTCLANKLEIKVGDVLKTELP-FFDAC-----VANLPYQISSPFVFKLL---LH 132 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E R+ A+ S Y RLS+ T + + + + F P PKV S Sbjct: 133 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVES 192 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-HQAGIETNL 259 +V+ P P P + + + AF ++ KTL + K E LL H I +L Sbjct: 193 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDHNYRIHCSL 249 >gi|222480514|ref|YP_002566751.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239] gi|222453416|gb|ACM57681.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239] Length = 303 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 112/260 (43%), Gaps = 32/260 (12%) Query: 27 QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTL-----------GARKVI 74 Q+FL+D +L +I D ++EIG G G LT LL + Sbjct: 34 QHFLVDDRVLDRIPGYLPDDADTSHLLEIGGGAGALTDRLLAAITSSADTDTAPAPGHLS 93 Query: 75 VIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 VIE+D F L++ ++ L++I+ DAL VD F +ANLPY + + Sbjct: 94 VIERDGTFADFLREEFATAIDDGLLDVIEGDALDVDLPDF------TACVANLPYGVSSE 147 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + F + P + L L+FQ E ER+ A YGRLSV ++ + Sbjct: 148 IAFRLL------PEGKPLVLMFQAEFAERMVASAGESEYGRLSVSAQHYAAVEIVERVPK 201 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P P V S V+ +P E+ + + F +RRKT+R +++ G H Sbjct: 202 EAFDPQPAVESAVVRCLPRDPDYEVGDEAFFLRFVKALFTQRRKTVRNAIRNTG-----H 256 Query: 252 QAGIETNLRAENLSIEDFCR 271 +G++ + + ED R Sbjct: 257 ISGLDDPEAVVDAADEDLLR 276 >gi|223038498|ref|ZP_03608792.1| dimethyladenosine transferase [Campylobacter rectus RM3267] gi|222880355|gb|EEF15442.1| dimethyladenosine transferase [Campylobacter rectus RM3267] Length = 287 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 130/277 (46%), Gaps = 23/277 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D L KI ++ D ++EIGAG G+LT +L + V E Sbjct: 4 IKAKKRFGQNFLQDEATLNKIIQAIPK-DTQNIVEIGAGLGDLTFRILRICG--VTSYEI 60 Query: 79 DQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + F +L K +++ N RL++ DAL V +++ P + ANLPY + T+++ + Sbjct: 61 DTELFALLQKKFANEIQNGRLKLFCKDAL-VQWDESGLSDEPYFLAANLPYYVATKMILS 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + ++ QKEV + +A+ + L++L + ++FD+ F Sbjct: 120 AVEDERC----RGMVVMIQKEVALKFSAKSGDRDFSSLAILASLQGSCELLFDVDASCFN 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKT----LRQSLKRL 244 P PKVTS+VI N I E K + AF RKT L Q ++ Sbjct: 176 PPPKVTSSVIKLQKSKNLIGETGVFKSEFEYEKFKIYLKIAFNAPRKTLMRNLSQGFEKP 235 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRI-TNILTDNQ 280 E + + N+R L+++ + I N+ DN+ Sbjct: 236 KIERIFSLLNLSANIRPHELNVDLYLEIFKNLKEDNE 272 >gi|157736324|ref|YP_001489007.1| dimethyladenosine transferase [Arcobacter butzleri RM4018] gi|315635457|ref|ZP_07890723.1| dimethyladenosine transferase [Arcobacter butzleri JV22] gi|166987689|sp|A8EQW4|RSMA_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157698178|gb|ABV66338.1| dimethyladenosine transferase [Arcobacter butzleri RM4018] gi|315480215|gb|EFU70882.1| dimethyladenosine transferase [Arcobacter butzleri JV22] Length = 265 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 16/247 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQNFL D IL KI +S + + ++EIG G G+LT+ L+ + + E Sbjct: 3 KVKAKKQYGQNFLKDSTILDKIIQSMPNNNN-HIVEIGPGLGDLTKNLVKY--KDLTAYE 59 Query: 78 KDQQFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRL 133 D ILK I + N L++I D L+ ++K N+ +IANLPY I T + Sbjct: 60 VDTDLIGILKSKFAIEIEKGN-LKLIHTDVLEA-WDKLKNLHDGKYDLIANLPYYIATNI 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW-RTKATMMFDISP 192 + + E + ++ QKEV E+ TA+ N Y L ++T + ++FD+ Sbjct: 118 ILRAFEDE----LCEHIIVMVQKEVAEKFTAKTNDKEYSSLGIITELISINSKILFDVPA 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKVTS++++ ++ + K + F + RK L ++L + +N++ + Sbjct: 174 EAFDPPPKVTSSILYIKKDMS--KSLDKDFNKFLKACFIQPRKKLSKNLTTIFDKNIIFE 231 Query: 253 AGIETNL 259 E N+ Sbjct: 232 IYKELNI 238 >gi|269120656|ref|YP_003308833.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386] gi|268614534|gb|ACZ08902.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386] Length = 276 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 124/272 (45%), Gaps = 23/272 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL + IL++I + TVIEIG G G LT+ L A +V E D Sbjct: 15 KKKYGQNFLENKVILEEIFSYADINKTDTVIEIGPGLGFLTESLAE-KAGQVYAFEIDDD 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 IL + S+ N L+II D + D + I+++AN+PY I + ++ I Sbjct: 74 LVKILSEKFSKVEN-LKIIHTDFMDYDLSEIVEKEKNIKVVANIPYYITSPIVGKLIK-- 130 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + ++ QKEV ERI+A S L+ + A +F + +F P PKV Sbjct: 131 -YRDSIDEIYIMVQKEVAERISAVSPSSDISLLTHAVQFFGNAEYLFTVKKELFNPVPKV 189 Query: 202 TSTVI--------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----N 248 S + + ++ K + AF +RK+L ++K LG + + Sbjct: 190 DSAFLGIKLYKDREYEKQIDEAEYF-----KYLKAAFSNKRKSLGNNMKNLGYDKQQTGS 244 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L + G + RAE S+++F N L D + Sbjct: 245 ALEKTGKKPLARAEEFSVQEFIDFINALKDEK 276 >gi|224128336|ref|XP_002320304.1| predicted protein [Populus trichocarpa] gi|222861077|gb|EEE98619.1| predicted protein [Populus trichocarpa] Length = 353 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 14/200 (7%) Query: 15 SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +HY+ I K GQ+ L + ++ I + SG V+EIG G GNLT+ LL G + Sbjct: 20 NHYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVVLEIGPGTGNLTKKLLEAG-KM 78 Query: 73 VIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V+ IE D + L+ + NRL++IQ D LK D +F+I +AN+PY I Sbjct: 79 VVAIELDPRMVLELQRRFQGTAFSNRLKVIQGDVLKTDLP-YFDI-----CVANIPYQIS 132 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F ++ P + ++FQ+E R+ AQ Y RLSV T + + + + Sbjct: 133 SPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLYARVSHLLKV 189 Query: 191 SPHVFFPSPKVTSTVIHFIP 210 + F P PKV S+V+ P Sbjct: 190 GKNNFRPPPKVDSSVVRIEP 209 >gi|313157110|gb|EFR56540.1| dimethyladenosine transferase [Alistipes sp. HGB5] Length = 383 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 22/247 (8%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPN-RL 97 A+++G D V+E+G G G LTQ LL R+ ++ + P ++ + + +P Sbjct: 152 AKAAGRCD---VLEVGCGMGVLTQFLL----RRDDIVTYGAEIDPESVEYLHAHYPEFTP 204 Query: 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157 +++ D LK++ + F ++II N PYNI +++ F + P + QKE Sbjct: 205 RLMEGDFLKMNLRELF--PGGLKIIGNFPYNISSQIFFKVLENRDLVP---ECVGMIQKE 259 Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217 V R+ S YG LSVL +F ++ VF P PKV S VI + Sbjct: 260 VAVRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETVFNPPPKVKSAVIRLRRNGVERLA 319 Query: 218 CLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL---RAENLSIEDFCRIT 273 C E+L K+ + +FG+RRK +R SL+ + G + G E RAE LS+ DF +T Sbjct: 320 CDETLFVKVVKASFGQRRKMIRNSLRSVFG----NFGGAEHPFFTQRAEQLSVADFVELT 375 Query: 274 NILTDNQ 280 + + N+ Sbjct: 376 DWVAANR 382 >gi|226480668|emb|CAX73431.1| DIM1 dimethyladenosine transferase 1-like protein [Schistosoma japonicum] Length = 313 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 16/227 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ + E SG +V+EIG+G GNLT LL G RKV E D + Sbjct: 25 GQHILKNPLVITTMIEKSGIKSTDSVLEIGSGTGNLTVKLLEKG-RKVYAFEIDPRLVSE 83 Query: 86 LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ +S H ++LEI+ DA+K F++ +ANLPY I + + I A Sbjct: 84 LQKRVQTSPHRSKLEILVGDAVKATSWPKFDLC-----VANLPYKISSPFIQRLIHAGRG 138 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + ++FQKE +R+TA+ Y RLS + K + IS + F P P+V S Sbjct: 139 ---FRAAVVMFQKEFADRLTAKPGDKVYCRLSASAQFHFKIEQLMKISRNSFRPPPRVDS 195 Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENL 249 V+ P +P+P + S + + F ++ KT+ + LGG+++ Sbjct: 196 AVVRIEPR-HPLPPVMHSEWDGLLRLVFARKNKTIGAN---LGGKSI 238 >gi|195449214|ref|XP_002071976.1| GK22567 [Drosophila willistoni] gi|194168061|gb|EDW82962.1| GK22567 [Drosophila willistoni] Length = 306 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I+ K GQ+ L + I+ + E + V+EIG G GN+T +L ++KVI E Sbjct: 21 IVFNKDFGQHILKNPLIITAMLEKAALRPTDVVLEIGPGTGNMTVRILE-KSKKVIACEI 79 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ P +L+++ D LK + FF++ IAN+PY I + L+F Sbjct: 80 DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E +R+ A+ Y RLS+ T + M+ + + F Sbjct: 134 LL---LHRPLFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236 >gi|212278079|gb|ACJ23054.1| KsgA [Neisseria gonorrhoeae] Length = 226 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 115/260 (44%), Gaps = 46/260 (17%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140 LK + ++L I + D L+ DF IS +I+ NLPYNI T LLF A Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + + QKEV ER+ A +PK Sbjct: 121 DDVA----DMHFMLQKEVVERMVA---------------------------------APK 143 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 144 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 203 Query: 259 LRAENLSIEDFCRITNILTD 278 RAE+++ E + ++N L D Sbjct: 204 DRAEHIAPEKYVALSNYLAD 223 >gi|239981691|ref|ZP_04704215.1| dimethyladenosine transferase [Streptomyces albus J1074] Length = 267 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 18/265 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P K GQNF++D N +++I ++ V+E+G G G+LT LL A+ V +E D Sbjct: 5 PTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGPGLGSLTLGLLET-AQHVTAVEIDD 63 Query: 81 QFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 L + ++ P R ++ DAL+V +P ++ANLPYN+ +L + Sbjct: 64 TLAAALPATVEARLPARAAHFALVHSDALRV---TELPGPAPTALVANLPYNVAVPVLLH 120 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + +P +L ++ Q EV +R+ A S YG SV W + I +VF+ Sbjct: 121 ML--EHFPTIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVKRAGAIGRNVFW 177 Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK-----RLGGENL 249 P+P V S ++ + P E + + AF +RRKTLR +L E Sbjct: 178 PAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAALSGWAGSAAAAEAA 237 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 L AG+ R E+L++E+F I Sbjct: 238 LVAAGVSPQARGESLTVEEFAAIAE 262 >gi|257076452|ref|ZP_05570813.1| dimethyladenosine transferase [Ferroplasma acidarmanus fer1] Length = 239 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 17/226 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KKY GQ FL D NI K G G V+EIG G G LT +LL+ K+ IE D + Sbjct: 7 KKY-GQVFLNDKNIAAKEVRLLGIEPGDHVLEIGPGHGILTGILLSEPV-KLTAIEPDHR 64 Query: 82 FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 F+ LK H + II++ L + +F+ II N+PYNI + +LF + Sbjct: 65 FYESLKISYHDHIVSGKFNIIKESFLDTE-PSYFD-----HIIGNIPYNISSPVLFKILD 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + ++S L+ QKE R+ A+ + Y R+++ T R+ ++F+++ VF P P Sbjct: 119 FN-----FKSSILMVQKEFARRLVARPGTKEYSRITINTSVRSTIKILFNVTRKVFSPVP 173 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 V S VI + + L + K + F RRK L L G Sbjct: 174 DVDSAVISIMK--KDVDIDLANFDKFIAKIFSMRRKKLSTILNYNG 217 >gi|158258883|dbj|BAF85412.1| unnamed protein product [Homo sapiens] Length = 313 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A++V+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKEVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 IIIPEDFSIAD--KIQQILT 281 >gi|288921307|ref|ZP_06415589.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f] gi|288347281|gb|EFC81576.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f] Length = 247 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 15/189 (7%) Query: 95 NRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 RL +++ D L+V +++P + ANLPYN+ LL + + +P L ++ Sbjct: 50 QRLHVVEADGLRVRPADLPAELAAPTVLAANLPYNVAVPLLLGLL--ERFPTIRRGLVMV 107 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 Q EV ER+TA YG SV W A + + VF+P P V S ++ F + Sbjct: 108 -QAEVAERLTAPPGGRIYGVPSVKLAWYADARLAGAVPRPVFWPQPNVDSALVAF--NRR 164 Query: 214 PIPCCLESLK----KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENL 264 P P +S + + AF +RRK LR +L G E ++ AG++ R E L Sbjct: 165 PAPPGDDSARAEVFALVDAAFAQRRKMLRTALASWAGSAQRAEQIIRAAGVDPGARGETL 224 Query: 265 SIEDFCRIT 273 +E + R+ Sbjct: 225 DVEAYARVA 233 >gi|74222329|dbj|BAE26964.1| unnamed protein product [Mus musculus] Length = 313 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 19/260 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ D + Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACGLDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257 S+V+ P P P + + + F ++ KTL + K + LL + ++ Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263 Query: 258 NLRAENLSIEDFCRITNILT 277 + E+ SI D +I ILT Sbjct: 264 TVIPEDFSIAD--KIQQILT 281 >gi|327348821|gb|EGE77678.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 383 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 22/251 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E D + Sbjct: 38 IGQHILKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RLE++ D +K D +F++ I+N PY I + L F ++ D Sbjct: 97 EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDV-----CISNTPYQISSPLTFKLLAIDP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV + + + + F P P V Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVE 207 Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S+V+ +P NP P + + + AF ++ KT+R S LG ++L +E+N R Sbjct: 208 SSVVRIVPK-NPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRT 262 Query: 262 ----ENLSIED 268 N+ +ED Sbjct: 263 WCAQNNIPVED 273 >gi|198436563|ref|XP_002125054.1| PREDICTED: similar to GF16271, partial [Ciona intestinalis] Length = 381 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 18/262 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ + E + TV+EIG G GN+T +L KVI E D + Sbjct: 27 VGQHILKNPLIINGMVEKAALKATDTVLEIGPGTGNMTVKMLE-KVNKVIACEIDPRMSA 85 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ P +L ++ D LK++ FFN+ +ANLPY I + ++F + Sbjct: 86 ELQKRVCGTPLQKKLHLMVGDVLKLESLPFFNVC-----VANLPYQISSPIVFKLL---L 137 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P + L+FQ+E +R+ A+ Y RLS+ T + ++ + + F P PKV Sbjct: 138 HRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSINTQLLARVDLLMKVGKNNFKPPPKVE 197 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLR 260 S+V+ P P P + + AF ++ KTL L R E L I +L Sbjct: 198 SSVVRIEPRNPPPPINFTEWDGLVRIAFLRKNKTL-SGLFRTSSVLEMLEKNYRIHCSLN 256 Query: 261 AENLSIEDFC---RITNILTDN 279 E + +D C ++ +IL +N Sbjct: 257 NETVP-DDLCMKTKVCSILEEN 277 >gi|330508534|ref|YP_004384962.1| dimethyladenosine transferase [Methanosaeta concilii GP-6] gi|328929342|gb|AEB69144.1| dimethyladenosine transferase [Methanosaeta concilii GP-6] Length = 247 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 22/245 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+FL+D +I+ I + V+EIG G G LT+ L R V +E D Sbjct: 3 LGQHFLIDRSIVDSIVSHADLGLEDWVLEIGPGEGILTRELAARAGR-VYAVEIDPD--- 58 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + + PN + +I DAL V ++ +I++NLPYNI +++ + +S Sbjct: 59 LAASLCNTAPNVM-VIHADALTVRLPQYN------KIVSNLPYNISSKITYRLLSR---- 107 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 PF + L+FQKE +R+ A+ S YGRL ++ G+ + ++ ++S F P P V S Sbjct: 108 PF-DLAVLMFQKEFAQRLKAEPASKIYGRLGMVAGFFSHIEILQNVSRKAFRPVPDVDSA 166 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLR 260 ++ P + ++ F RRK +++ L G + + L Q+ I N+R Sbjct: 167 IVRLRPRTERPQVDPRAFMRLADILFRNRRKKVKKGLAAYGVDKMTLAELDQSLI--NMR 224 Query: 261 AENLS 265 E L+ Sbjct: 225 PEELT 229 >gi|328866316|gb|EGG14701.1| dimethyladenosine transferase [Dictyostelium fasciculatum] Length = 319 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 12/187 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I+ I E + TV+EIG G GNLT LL +KVI +E D + Sbjct: 37 KAYGQHLLKNPLIIDAIVEKAQLKSTDTVLEIGPGTGNLTMKLLE-SCKKVIAVEVDPRM 95 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L S P + L+II D LK D +F++ +AN+PY I + L F ++ Sbjct: 96 AAELHKRVSTTPYASHLQIILGDFLKADLP-YFDVC-----VANVPYQISSPLTFKLLA- 148 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + S L+FQ E R+ A+ Y RLSV T K T + ++ + F P PK Sbjct: 149 --HRPVFRSAVLMFQLEFAARLAARPGDSLYCRLSVNTQLLGKVTKLMNVGKNNFLPPPK 206 Query: 201 VTSTVIH 207 V S V+ Sbjct: 207 VESAVVR 213 >gi|58259713|ref|XP_567269.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus neoformans var. neoformans JEC21] gi|134116780|ref|XP_773062.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255682|gb|EAL18415.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229319|gb|AAW45752.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 325 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + + + I + + V+E+G G GNLT +L RKV+ +E D + Sbjct: 47 GQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILP-ACRKVVAVEMDPRMAAE 105 Query: 86 LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++ + +LE+I D +K D +F++ +I+N PY I + L+F +S Sbjct: 106 VQKRVLGKPEQKKLELIVGDFVKADLP-YFDV-----LISNTPYQISSPLVFKLLSQRPI 159 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P L+FQ+E R+ A N+ +GRL+ + + + F P P+V S Sbjct: 160 P---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQVES 216 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 +V+ +P P P E + + F + KTLR K G LL + Sbjct: 217 SVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 265 >gi|167394422|ref|XP_001733536.1| dimethyladenosine transferase [Entamoeba dispar SAW760] gi|165894697|gb|EDR22603.1| dimethyladenosine transferase, putative [Entamoeba dispar SAW760] Length = 252 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 13/196 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I ++I +++ V+EIG G GNLT +L +K+I IE D + Sbjct: 14 KSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPF-CKKLIAIEIDPRM 72 Query: 83 FPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 LK S + +LEIIQ D LKV+ +F++ ++N PY+I + L+F ++ Sbjct: 73 AAELKKRVSVTDYVKKLEIIQGDFLKVELP-YFDVC-----VSNTPYSISSPLVFKLLNH 126 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + S L+FQ+E R+ A+ P Y RLSV T + + + F P PK Sbjct: 127 R---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFKPPPK 183 Query: 201 VTSTVIHFIPHLNPIP 216 V S+V+ IP + P P Sbjct: 184 VESSVVRMIP-VKPAP 198 >gi|119719407|ref|YP_919902.1| ribosomal RNA adenine methylase transferase [Thermofilum pendens Hrk 5] gi|119524527|gb|ABL77899.1| dimethyladenosine transferase [Thermofilum pendens Hrk 5] Length = 270 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 102/190 (53%), Gaps = 14/190 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ +GQ+FL+D + +IA ++G V E+G G G+LT + L+ + V EKD+ Sbjct: 16 KRRLGQHFLVDDTVASRIA---SFVNGEDVYEVGCGLGSLT-LPLSERSAYVFCCEKDEA 71 Query: 82 FFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L +++ + ++I+ DAL++D + ++ +++N P+NI ++L+ Sbjct: 72 LALFLSRELYRRGIGNVDIMVGDALRIDLSRSSHL-----VVSNTPFNISSQLVVKLCYD 126 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + L Q+EV ER+ A+ + YGRLSV++ +FD+ P+ F P PK Sbjct: 127 EGLLKAYLGL----QREVAERLYAKPGTREYGRLSVISQLCFSIERLFDVPPNAFLPPPK 182 Query: 201 VTSTVIHFIP 210 V ++ + +P Sbjct: 183 VFTSFVRLVP 192 >gi|229113716|ref|ZP_04243152.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3] gi|228669713|gb|EEL25119.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3] Length = 220 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 19/218 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D F + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + + P ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + I+ R E LSIE+F ++N L Sbjct: 177 FPKDKELLDRILTEVEIDPKRRGETLSIEEFATLSNAL 214 >gi|321258494|ref|XP_003193968.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus gattii WM276] gi|317460438|gb|ADV22181.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus gattii WM276] Length = 324 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + + + I + + V+E+G G GNLT +L RKV+ +E D + Sbjct: 46 GQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILP-ACRKVVAVEMDPRMAAE 104 Query: 86 LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++ + +LE+I D +K D +F++ +I+N PY I + L+F +S Sbjct: 105 VQKRVLGKPEQKKLELIVGDFVKADLP-YFDV-----LISNTPYQISSPLVFKLLSQRPI 158 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P L+FQ+E R+ A N+ +GRL+ + + + F P P+V S Sbjct: 159 P---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQVES 215 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 +V+ +P P P E + + F + KTLR K G LL + Sbjct: 216 SVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 264 >gi|114600101|ref|XP_001136315.1| PREDICTED: dimethyladenosine transferase isoform 1 [Pan troglodytes] gi|297675339|ref|XP_002815640.1| PREDICTED: probable dimethyladenosine transferase-like isoform 2 [Pongo abelii] gi|12803983|gb|AAH02841.1| DIMT1L protein [Homo sapiens] Length = 275 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 24/255 (9%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLLLHR- 145 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 146 --PFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ P P P + + + F ++ KTL + K + LL E N R Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL-----EKNYRIH 258 Query: 263 NLSIEDFCRITNILT 277 C + NI++ Sbjct: 259 -------CSVHNIVS 266 >gi|327262970|ref|XP_003216295.1| PREDICTED: probable dimethyladenosine transferase-like [Anolis carolinensis] Length = 328 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 22/257 (8%) Query: 33 LNILKKIAESSGSLDGI---------TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 LN LK +S+ S G+ V+E+G G GN+T +L ++V+ E D + Sbjct: 48 LNWLKDTTKSNPSSAGMKHASLYPTDVVLEVGPGTGNMTVKMLE-KVKRVVACEVDVKLA 106 Query: 84 PILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ P N+LEI D LK D FF+ +ANLPY I + +F + Sbjct: 107 GELQKRVQGTPLANKLEIKIGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLLLHR 160 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 PF+ L+FQ+E R+ A+ SP Y RLSV T + + + + F P PKV Sbjct: 161 ---PFFRCAVLMFQREFALRLVAKPGSPLYCRLSVNTQLLARVDHLMKVGKNNFKPPPKV 217 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S+V+ P P P + + + F ++ KTL + LL Q + Sbjct: 218 ESSVVRIEPKNPPPPINFQEWDGLLRIVFVRKNKTLAAVFNSTAVKRLLEQ-NYRIHCSQ 276 Query: 262 ENLSIEDFCRITNILTD 278 NL I + I N++ + Sbjct: 277 NNLEIPENFNIGNLIHE 293 >gi|224373783|ref|YP_002608155.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Nautilia profundicola AmH] gi|223588383|gb|ACM92119.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Nautilia profundicola AmH] Length = 219 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 96/191 (50%), Gaps = 15/191 (7%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 VIEIG G G+LT+ LL R+V E D+ ILK + PN L + D L+ E Sbjct: 8 VIEIGPGLGDLTEKLLE--KRRVTAYEIDKDLCEILK---KKFPN-LNLKCGDVLEFWQE 61 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 N +IANLPY I T ++ + +++ +L QKEV ++ +A+ + Sbjct: 62 TLEN--EKYDLIANLPYYIATNIILKALKDKNA----KNILVLIQKEVADKFSAKAGDKN 115 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230 Y L++L K +FDI P F P+PKVTS+VI F N E K + AF Sbjct: 116 YSSLAILAQSVAKVKKLFDIPPGAFVPAPKVTSSVILFEKFENSFD---EEFAKFLKVAF 172 Query: 231 GKRRKTLRQSL 241 RKTL+++L Sbjct: 173 ANPRKTLKKNL 183 >gi|257452467|ref|ZP_05617766.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R] gi|317059008|ref|ZP_07923493.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R] gi|313684684|gb|EFS21519.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R] Length = 271 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 123/269 (45%), Gaps = 27/269 (10%) Query: 22 KKYMGQNFLL-DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL IL KI E S ++EIG G G LT++LL A+ V+ IE D+ Sbjct: 6 KKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQ-EAKSVLNIEIDE 64 Query: 81 QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 PIL K + RL + D L+V+F ++ + +++AN+PY I + ++ I Sbjct: 65 DLKPILQKKFGNIEKYRL--VMGDVLEVNFAEY--MQEGTKVVANIPYYITSPIIQKIIE 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + ++ L+ QKEVGERI A+K L++ + K +F I F P P Sbjct: 121 NRS---LIQAAFLMVQKEVGERICAKKGKER-SALTLSVEYFAKPEYLFTIPKEYFTPIP 176 Query: 200 KVTSTVIHF-------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----E 247 KV S I I P K + F +RK L + LG + Sbjct: 177 KVDSAFIGIRMKKEEEIAKQAPETLFF----KYVKAGFFNKRKNLANNFLALGFTKAEIK 232 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L GI RAENLS+ED+ + L Sbjct: 233 EKLAILGISETERAENLSLEDWFSVIKAL 261 >gi|125600382|gb|EAZ39958.1| hypothetical protein OsJ_24395 [Oryza sativa Japonica Group] Length = 358 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I + G V+E+G G GNLT LL A +V +E D Sbjct: 39 KPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID--- 95 Query: 83 FPILKDISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 P + D + ++L +I+ DA++ +F +F ++ +AN+PY I + L+ Sbjct: 96 -PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAK 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + + TLL QKE R+ A Y RL+ A ++ D+S F Sbjct: 149 LLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFV 205 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 P PKV S+++ P L T+ FG++ KTL Sbjct: 206 PMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTL 246 >gi|125558476|gb|EAZ04012.1| hypothetical protein OsI_26151 [Oryza sativa Indica Group] Length = 358 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I + G V+E+G G GNLT LL A +V +E D Sbjct: 39 KPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID--- 95 Query: 83 FPILKDISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 P + D + ++L +I+ DA++ +F +F ++ +AN+PY I + L+ Sbjct: 96 -PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAK 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + + TLL QKE R+ A Y RL+ A ++ D+S F Sbjct: 149 LLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFV 205 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 P PKV S+++ P L T+ FG++ KTL Sbjct: 206 PMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTL 246 >gi|119571771|gb|EAW51386.1| dimethyladenosine transferase, isoform CRA_c [Homo sapiens] Length = 266 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 24/255 (9%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ P P P + + + F ++ KTL + K + LL E N R Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL-----EKNYRIH 258 Query: 263 NLSIEDFCRITNILT 277 C + NI++ Sbjct: 259 -------CSVHNIVS 266 >gi|222622078|gb|EEE56210.1| hypothetical protein OsJ_05183 [Oryza sativa Japonica Group] Length = 314 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 40/255 (15%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 60 TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDA 119 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119 GA V +EKD+ ++ D +L+II++D K + EK + Sbjct: 120 GA-TVFAVEKDKHMATLVNDRFGS-TEQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYA 177 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178 ++++NLP+N+ T ++ + + + LL Q E R A +P Y ++V Sbjct: 178 KVVSNLPFNVSTEVVKLLLP---MGDVFSVMVLLLQDETALRFADASIQTPEYRPINVFV 234 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + ++ F + FFP PKV S AF +RK LR Sbjct: 235 NFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKMLR 269 Query: 239 QSLKRLGGENLLHQA 253 +SL+ L + + A Sbjct: 270 KSLQHLCSSSEIEAA 284 >gi|159107917|ref|XP_001704233.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803] gi|157432290|gb|EDO76559.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803] Length = 316 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 14/220 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++K I E + TV+EIG G GNLT LL AR VI IE D + Sbjct: 8 KQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KARHVIAIEIDPRM 66 Query: 83 FPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNW 137 LK + P + II D K+ + F++ ++N PYNI + ++F Sbjct: 67 VSELKKRIAAIPEYRGKFTIIHKDFTKMPPSEIPPFDLC-----VSNCPYNISSGIVFRL 121 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P L+FQ E +R+ A+ Y RL+V T +K ++ +S + F P Sbjct: 122 LEIQPLP---RKFVLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRNSFKP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 P V S V+ P P L+ +T+ F K+ KTL Sbjct: 179 PPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTL 218 >gi|33862894|ref|NP_894454.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9313] gi|62900570|sp|Q7V7W0|RSMA_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33634810|emb|CAE20796.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 280 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 13/254 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K Q++L+D +L +I +++ ++E+G G G LT+ LL A V +E D+ Sbjct: 9 RKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK + R + + D L V + + +++AN+PYNI LL + Sbjct: 69 LVSGLKQRFADQ-ARFSLQEGDVLSVPL-TLADGRAATKVVANIPYNITGPLLERLLGRL 126 Query: 142 TWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P P+ + L LL QKEV +RI A + LSV + T + + P F P Sbjct: 127 DRPVDHPY-QRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLARCTTVCPVPPRSFKPP 185 Query: 199 PKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE--NLLH 251 PKV S VI P P + ++ + ++AF RRK LR +L ++ E L Sbjct: 186 PKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNALAD 245 Query: 252 QAGIETNLRAENLS 265 GI R + LS Sbjct: 246 DLGISLQQRPQELS 259 >gi|115472299|ref|NP_001059748.1| Os07g0509600 [Oryza sativa Japonica Group] gi|113611284|dbj|BAF21662.1| Os07g0509600 [Oryza sativa Japonica Group] Length = 347 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I + G V+E+G G GNLT LL A +V +E D Sbjct: 28 KPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID--- 84 Query: 83 FPILKDISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 P + D + ++L +I+ DA++ +F +F ++ +AN+PY I + L+ Sbjct: 85 -PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAK 137 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + + TLL QKE R+ A Y RL+ A ++ D+S F Sbjct: 138 LLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFV 194 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 P PKV S+++ P L T+ FG++ KTL Sbjct: 195 PMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTL 235 >gi|308448554|ref|XP_003087684.1| hypothetical protein CRE_15249 [Caenorhabditis remanei] gi|308253631|gb|EFO97583.1| hypothetical protein CRE_15249 [Caenorhabditis remanei] Length = 131 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 2/125 (1%) Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P PKVTS V P+ Sbjct: 3 FMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKVTSAVFRLEPY 62 Query: 212 LN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 PI E +L ++ F +RRKTLR SLK + E+ AG++ R E L++ F Sbjct: 63 ATKPIVAKSEKALARLVSHVFTQRRKTLRNSLKGMLLEDGFENAGVDPMARPETLTLAQF 122 Query: 270 CRITN 274 +++ Sbjct: 123 VALSD 127 >gi|224090635|ref|XP_002188905.1| PREDICTED: putative putative dimethyladenosine transferase [Taeniopygia guttata] Length = 305 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 119/277 (42%), Gaps = 40/277 (14%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I + + ++E+G G GNLT +L +KVI E D + Sbjct: 27 GQHILKNPLVVNSIIDKAALRRTDVILEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 85 Query: 86 LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ + N+LEI D LK D FF+ +ANLPY I + +F + Sbjct: 86 LQKRVQGTCLANKLEIKVGDILKTDLP-FFDAC-----VANLPYQISSPFVFKLL---LH 136 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E R+ A+ S Y RLS+ T + + + + F P PKV S Sbjct: 137 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 196 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----------LHQA 253 +V+ P P P + + + AF ++ KTL + K E L LH Sbjct: 197 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDRNYQVHCSLHNT 256 Query: 254 GIETNL------------------RAENLSIEDFCRI 272 I N RA ++ I+DF R+ Sbjct: 257 EIPENFKIAEKIQTVLKDTGYSEKRARSMDIDDFIRL 293 >gi|262037354|ref|ZP_06010819.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264] gi|261748611|gb|EEY35985.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264] Length = 278 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 13/269 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I KK GQNFL D + +I E + V+EIG G G LT+ L+ ++ + E Sbjct: 11 KNIAKKKYGQNFLTDGELSDRILEEADIDKNTEVVEIGPGLGFLTEKLIE-KSKHLTAFE 69 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D P+L N L ++ D L+++ ++ I+++AN+PY I + ++ Sbjct: 70 IDDDLIPVLNKKFKDKDNFL-LVHKDFLEINLGEYLEDRENIKVVANIPYYITSPIINRL 128 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + L+ QKEV ERI+++ S + L+ + + +F + F P Sbjct: 129 IE---FRDNISEIYLMVQKEVAERISSKPRSKNMSILTHAVQFFAETEYLFTVPKEKFDP 185 Query: 198 SPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GEN----L 249 PKV S + + E K ++AF +RK++ +L LG G+ + Sbjct: 186 VPKVDSAFLKIVLLKDKRYESQISEEKYFKYLKKAFSNKRKSISNNLSELGFGKEKISGV 245 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278 L + G + R E S+++F IL + Sbjct: 246 LQKVGKTSLARTEEFSVQEFIDFIKILEN 274 >gi|313888579|ref|ZP_07822244.1| putative dimethyladenosine transferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845308|gb|EFR32704.1| putative dimethyladenosine transferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 223 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 28/220 (12%) Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNI---SSPIR 120 L L A+KV+ +E D++ L+D+ + + +++I D L++D EK + Sbjct: 5 LALRAKKVVAVEIDEK----LRDLHKETLDIENVKVIYGDFLELDLEKIVEEEFGDEGFK 60 Query: 121 IIANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++ANLPY + T +LL + ++ S+T++ QKEV +R+ AQ + YG LSV Sbjct: 61 VVANLPYYVTTPIIEKLLLSKVN-------LISITVMVQKEVAKRLAAQPGNKDYGSLSV 113 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 + T F + VF P P V S V++ + + L KI + AF RRKT Sbjct: 114 FINYYTDCKYKFQVPSSVFMPKPNVDSAVVN-LKMKEREDLDTDFLFKIVRAAFTTRRKT 172 Query: 237 LRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDF 269 L S G + L +GI+ RAE LS+E+F Sbjct: 173 LLNSFSNSGLPYSKDDIKRALELSGIDGGRRAETLSLEEF 212 >gi|299137112|ref|ZP_07030295.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8] gi|298601627|gb|EFI57782.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8] Length = 295 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 121/286 (42%), Gaps = 29/286 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA----------- 70 K +GQNFL+D + +I+ES G TV+EIG G G +T +L A Sbjct: 4 KPKLGQNFLVDESACLRISESLGDTRARTVVEIGPGHGAITDLLAPRCALLHCIEFDPAL 63 Query: 71 -RKVIVIEKDQQFFPI---------LKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPI 119 R++ ++ I L + SQ+ N E + + E + ++ + Sbjct: 64 ARELAFRFRNDPHVTIHNADILQTDLSQLESQNSNLEAESSSLNPSSLLAEPTPSPAATL 123 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I NLPY I + +L + A ++ L+ Q+EV ERI + S YG LS T Sbjct: 124 DVIGNLPYYITSDILLHLFVAARKGILARAV-LMMQREVAERIASAPGSSDYGALSAFTQ 182 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 T +F + P F P P V STV+ F P + E + F ++RKTL Sbjct: 183 LHAHVTNLFTLPPEAFSPPPDVYSTVLRLDFAPRFTELGVEPEGFNSFLRSTFAQKRKTL 242 Query: 238 RQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILTDN 279 +L+ G + + I R+E + +E + L+ N Sbjct: 243 ANNLRVAGYSSAQLTSVWPTSIPAQARSEAVPLEAMAELYRALSTN 288 >gi|331229364|ref|XP_003327348.1| dimethyladenosine transferase dimethyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309306338|gb|EFP82929.1| dimethyladenosine transferase dimethyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 341 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 20/225 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-- 82 +GQ+ L + + + I + + V+E+G G GNLT +L + + V+E D + Sbjct: 51 LGQHILKNPLVAQTIVDKANLKTTDKVLEVGPGTGNLTVKILEKNCKSLTVVEMDPRMAF 110 Query: 83 -----FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 F KD++ + +LEII D LK + +F++ I+N PY I + L+F Sbjct: 111 ELSKRFQNAKDLNFKR--KLEIIVGDFLKTELP-YFDV-----CISNTPYQISSPLVFKL 162 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + L+FQKE G R++A+ S + RLSV +K T + ++ F P Sbjct: 163 LEHR---PLFRVAILMFQKEFGLRLSARPGSKLWSRLSVNVQLYSKVTHLMNVGKANFRP 219 Query: 198 SPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241 P V S V+ P LNP P +T+ F +R KT+R S Sbjct: 220 PPLVESCVVKIEP-LNPPPNIAFNEFDGLTRICFNRRNKTVRASF 263 >gi|325093055|gb|EGC46365.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces capsulatus H88] Length = 384 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 22/251 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E D + Sbjct: 38 IGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RLE++ D +K D +F++ I+N PY I + L F ++ + Sbjct: 97 EVTKRVQGKPEQKRLEVLLGDVIKTDL-PYFDV-----CISNTPYQISSPLTFKLLATNP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV + + + + F P P V Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVE 207 Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S+V+ +P NP P + + + AF ++ KT+R S LG ++L+ +E+N R Sbjct: 208 SSVVRIVPK-NPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLNM--LESNYRT 262 Query: 262 ----ENLSIED 268 N+ +ED Sbjct: 263 WCAQNNIPVED 273 >gi|256389803|ref|YP_003111367.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928] gi|256356029|gb|ACU69526.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928] Length = 306 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 25/281 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF++D N +++I + V+E+G G G+LT LL + Sbjct: 27 VRRLAEKLGVSPTKKLGQNFVIDPNTIRRIVRAGDVTAEDVVVEVGPGLGSLTLGLLDV- 85 Query: 70 ARKVIVIEKDQQFFPILKDISSQ-HPN------RLEIIQDDALKVDFEKFFNISSPIRII 122 AR+V+ +E D L D ++ P E+++ DAL++ S P ++ Sbjct: 86 ARRVVAVEIDPVLAAALPDTLAEFAPGIAAGQAEFELVRADALRI---AELPGSPPTALV 142 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + + +P +L ++ Q EV +R+ A+ YG SV W Sbjct: 143 ANLPYNVAVPVLLHML--ERFPSIERTL-IMVQSEVADRLAAEPGGRVYGVPSVKARWYA 199 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 I VF+P+P V S ++ +P ++ ++ AF +RRKTLR Sbjct: 200 DVKRAGAIGRSVFWPAPNVDSGLVRL--DRRAVPPSTKAGRRDVFAAVDAAFAQRRKTLR 257 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 +L G L AGI + R E L++E+F R+ Sbjct: 258 SALSGWAGSPAAAETALTAAGINPSARGETLTVEEFARLAE 298 >gi|255323625|ref|ZP_05364755.1| dimethyladenosine transferase [Campylobacter showae RM3277] gi|255299339|gb|EET78626.1| dimethyladenosine transferase [Campylobacter showae RM3277] Length = 287 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 23/277 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D L KI ++ D ++EIG G G+LT +L + V E Sbjct: 4 IKAKKCFGQNFLHDEATLNKIIQAIPK-DTQNIVEIGPGLGDLTFRILRICG--VTSYEI 60 Query: 79 DQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + F +L K +++ N RL++ DAL E + P + ANLPY + T+++ N Sbjct: 61 DTELFALLQKKFANEIQNGRLKLFCKDALDQWSEDGLSYE-PYFLAANLPYYVATKMILN 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + L ++ QKEV + +A+ + L++L + ++FD++ F Sbjct: 120 AIEDEKC----RGLVVMIQKEVALKFSAKSGDRDFSSLAILASLQGGCELLFDVAASCFN 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKTLRQSL----KRL 244 P PKVTS+VI N I E K + F RKTL ++L +R Sbjct: 176 PPPKVTSSVIKLQKSKNLIGETGVFKSKFEYEKFKTYLKIVFSAPRKTLMKNLSSSYERP 235 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRI-TNILTDNQ 280 E + + ++R L+++ + + N+ DN+ Sbjct: 236 EIERIFSMLNLSAHIRPHELNVDLYLEVFKNLKEDNE 272 >gi|126696263|ref|YP_001091149.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9301] gi|166221687|sp|A3PCS3|RSMA_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126543306|gb|ABO17548.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 274 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 14/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ IE D+ Sbjct: 9 KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLNSEIKKLHAIELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139 +L D + ++ + Q D L V+ + +I+ I ++IAN+PYNI +L +I Sbjct: 69 LINLLND-KFNNNDKFSLQQGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124 Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P Sbjct: 125 LGIIRKYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKRICDVPPSSFSPP 184 Query: 199 PKVTSTVIHFIPHLNP--IPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLLH 251 PKV S+++ F P N + LE + K+ + +F RRK LR +L L E L Sbjct: 185 PKVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNTILSNEEINELSE 244 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 + + NLR +++SI+ + ++ Sbjct: 245 SSKVCFNLRPQDISIDQWIKLA 266 >gi|331087257|ref|ZP_08336327.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408943|gb|EGG88404.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 211 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 17/174 (9%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 5 TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V+ +E D+ PIL+D S + N + +I +D LK+D K N P Sbjct: 64 TQ-YLACAAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 I+++ANLPY I T ++ + P +S+T++ QK G R PH G Sbjct: 122 IKVVANLPYYITTPIIMGLFESHV--PV-QSITVMVQKR-GRR-------PHAG 164 >gi|237751435|ref|ZP_04581915.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879] gi|229372801|gb|EEO23192.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879] Length = 313 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 28/271 (10%) Query: 22 KKYMGQNFLLDLNILKKIAES-----SGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIV 75 KK +GQ+FL D IL +I +S + +D + +IE+G G G+LT+ LL+ + Sbjct: 45 KKSLGQHFLHDSVILDRIFQSIPHDIAAEIDKSVRLIEVGIGLGDLTKRLLSKYSLLAYE 104 Query: 76 IEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I+ D I + + H NRL+++Q D LKV + +SS +++NLPY I T Sbjct: 105 IDYD----LITQAEKNYHHEIETNRLQLVQADVLKVRHNDSYLLSSDYFLVSNLPYYIAT 160 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + F ++ QKEV ++ A++ Y LS+L + +F + Sbjct: 161 AIILQALKDTHCKGFL----VMTQKEVAQKFCAKQKDSTYCSLSLLAQSFGDISYLFSVP 216 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----- 246 F P PKV S V F LESL AF RK L +L + Sbjct: 217 KEAFNPPPKVESAVFCFKRGKCHYTQDLESLLHF---AFLAPRKKLFSNLMQYDKLRDKA 273 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNI 275 +++ ++ N+RA + ++++C + +I Sbjct: 274 MLKHIFQTMQLDENVRAHEVGLQEYCDMLHI 304 >gi|42522227|ref|NP_967607.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100] gi|62900539|sp|Q6MQ47|RSMA_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39574758|emb|CAE78600.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100] Length = 274 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 131/277 (47%), Gaps = 21/277 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ L+ I KK +GQNFL+ ++ +I + + ++E+G GPG LT Sbjct: 1 MSYSRERLQRAQEAMGIAAKKSLGQNFLVSDTVINRIIDQVKAFAPEELVEVGPGPGALT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 +LL L + +IE D ++ L +I+ DAL++D+++F+ + + Sbjct: 61 DLLLEL-NLPLQLIELDSAIAAYWRE------KGLTVIEQDALRLDWKQFYT-GKRVVFV 112 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY I + ++ I ++ L+FQKEV ++I +S YG LSV Sbjct: 113 SNLPYQISSSIV---IERSLENEGVAAMVLMFQKEVAQKIRGTVDSDLYGLLSVYAQAFW 169 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL- 241 K + D P F P PKV S V+ F + ++ + AF +RRK L+++L Sbjct: 170 KIETVTDAGPRDFQPPPKVASRVLSF-ERIESEVKNRKAFLTFVKCAFAQRRKLLKKNLS 228 Query: 242 -----KRLGGENL---LHQAGIETNLRAENLSIEDFC 270 K+L E + L + G + RAE LS + F Sbjct: 229 GLLSQKKLTEEQMVGWLAELGFKETARAEELSPKQFV 265 >gi|145591594|ref|YP_001153596.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514] gi|145283362|gb|ABP50944.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514] Length = 228 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 30/239 (12%) Query: 23 KYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + + Q+FL D ++ + I G LD VIE+G G G LT L ++ V IE D+ Sbjct: 3 RRLSQHFLRDRSVAEFIVGLVPGGLD---VIEVGPGTGALT-FPLAEKSKTVYAIELDKS 58 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + + ++ P + +I DAL+V++ K FF ++N+PY+I + LL ++ Sbjct: 59 ---LAEQLRARAPPNVVVIWGDALQVEWPKADFF--------VSNMPYSITSPLLLK-LA 106 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + Q+EV ER+ A + YGRL+V + ++ + P VF P P Sbjct: 107 RHRLP-----AVVTVQREVAERMAAVPGTEEYGRLTVAIQCMYEVEVVRVLPPRVFSPPP 161 Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 KV S V+ P PC E+ ++ T + F RRKTLR+ LK + ++Q +E Sbjct: 162 KVYSAVVTLRPK---APCVDDFEAFERFTAKLFSARRKTLRR-LKLAQSDKRVYQLTVE 216 >gi|225563099|gb|EEH11378.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces capsulatus G186AR] gi|240279925|gb|EER43430.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces capsulatus H143] Length = 384 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 22/251 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E D + Sbjct: 38 IGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RLE++ D +K D +F++ I+N PY I + L F ++ + Sbjct: 97 EVTKRVQGKPEQKRLEVLLGDVIKTDL-PYFDV-----CISNTPYQISSPLTFKLLATNP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV + + + + F P P V Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVE 207 Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S+V+ +P NP P + + + AF ++ KT+R S LG ++L +E+N R Sbjct: 208 SSVVRIVPK-NPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRT 262 Query: 262 ----ENLSIED 268 N+ +ED Sbjct: 263 WCAQNNIPVED 273 >gi|154174948|ref|YP_001407358.1| dimethyladenosine transferase [Campylobacter curvus 525.92] gi|171769251|sp|A7GVW6|RSMA_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|112802443|gb|EAT99787.1| dimethyladenosine transferase [Campylobacter curvus 525.92] Length = 285 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 35/283 (12%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK+ GQNFL D +L KI ++ D ++EIG G G+LT +L + + V E Sbjct: 2 IRAKKHFGQNFLQDEAVLNKIIQAIPK-DTQNIVEIGPGLGDLTFKILQICS--VTAYEI 58 Query: 79 DQQFFPIL-KDISSQHPN-RLEIIQDDALK------VDFEKFFNISSPIRIIANLPYNIG 130 D + F +L K + + N RL++ DAL+ V + +F ++ANLPY + Sbjct: 59 DSELFALLGKKFAKEVQNGRLKLFCKDALEKWDEGGVSEQGYF-------LVANLPYYVA 111 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T+++ + I + L ++ Q+EV + +A+ + L++L + ++FD+ Sbjct: 112 TKMILSAIDDEKC----RGLVVMIQREVALKFSAKSGESEFSSLAILANLQGSCELLFDV 167 Query: 191 SPHVFFPSPKVTSTVIHFIPH--------LNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 S F P PKV S+VI + E K + AF RKTL ++L Sbjct: 168 SAQCFNPPPKVVSSVIKIQKSKILLGESGIFKDKFEYEKFKIFLKIAFASPRKTLMKNLS 227 Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRI-TNILTDNQ 280 + L + + +R L++E + +I N+ DN+ Sbjct: 228 AKFDKFELNTLFAELNLSPAIRPHELNVELYLKIFENLKEDNE 270 >gi|269860446|ref|XP_002649944.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348] gi|220066631|gb|EED44106.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348] Length = 275 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 17/225 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK Q+ L++ N++ I + + V+EIGAG GN+T LL A+KVI EKD++ Sbjct: 6 KKSESQHMLVNNNLIDVIIDKAKIKHTDIVLEIGAGTGNITMKLLP-KAKKVIAYEKDKK 64 Query: 82 FF-PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 I + +Q +L +IQDD L+ + F + I+N+P+NI ++ + Sbjct: 65 LANEIQNKLYTQKLLKAKLHLIQDDVLENNLPHF------DKCISNIPFNISLPIILKLM 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ +++ +L QKE +R+T++ S Y RLSV+ K + + + F P Sbjct: 119 NS-----HFKNAFILVQKEFADRLTSRPGSKDYSRLSVIVQLFAKVECVLKVKKNNFIPQ 173 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK 242 PKV + I P + P P L + + F ++ KTL +LK Sbjct: 174 PKVDTCFIKIEPKV-PRPSLDLTEFDNLLKICFSRKNKTLMSNLK 217 >gi|242045762|ref|XP_002460752.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor] gi|241924129|gb|EER97273.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor] Length = 356 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 25/224 (11%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I + G ++E+G G GNLT LL A +V+ +E D + Sbjct: 46 KPRGQHLLTNPRVLDAIVRRAAISSGDAILEVGPGTGNLTARLLASHAARVVAVEIDPR- 104 Query: 83 FPILKDISSQH-----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RL 133 +++ ++++ ++L +I DA++V+F + F++ +AN+PY I + +L Sbjct: 105 --MVESVTARAAALGLADKLTVIAGDAVEVEFPE-FDV-----CVANIPYGISSPLIAKL 156 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF P + + TLL QKE R+ A Y RL+ ++ D+S Sbjct: 157 LFG-------PYRFRTATLLLQKEFARRLVATPGDGEYNRLAANVRLVADVRLLMDVSKR 209 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 F P P+V S+++ P + T+ FG++ KTL Sbjct: 210 DFVPMPRVDSSLVEIRPRGIAPGVDVSEWLAFTRACFGQKNKTL 253 >gi|170291019|ref|YP_001737835.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum cryptofilum OPF8] gi|170175099|gb|ACB08152.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum cryptofilum OPF8] Length = 243 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 113/218 (51%), Gaps = 16/218 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ ++ +K IA+ + G VIE+GAG GNL++ +L+ RK+I++EKD++F Sbjct: 5 LGQHMMVSRKWIKLIADLL-DVRGDEVIELGAGTGNLSEEILSRDPRKLILVEKDERFVD 63 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 IL++ R+EI L+ D + + +I +N PY + ++L+ ++ Sbjct: 64 ILRE-KFGGDERVEI-----LRADIRELLPLRVE-KIASNPPYYLSSQLIIGLARSE--- 113 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + L QKE ER+ A+ + YG LSV+ K +++ + F P PKV S Sbjct: 114 --FRRAVLTLQKEFAERLIAKPGTEKYGSLSVIASLLLKVSLVSIVDRRSFNPVPKVDSA 171 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ P + + + + K + F +R++ L+ SLK Sbjct: 172 ILVIEPKQDELR---DQILKYCKLIFSRRKRELKNSLK 206 >gi|25146882|ref|NP_496061.2| hypothetical protein E02H1.1 [Caenorhabditis elegans] gi|27808654|sp|Q09522|DIMT1_CAEEL RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|20803714|emb|CAA87382.2| C. elegans protein E02H1.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 308 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 12/214 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E S TV+E+G G GNLT +L + A+ VI E D + Sbjct: 29 GQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +K P N+L++ D +K+++ FF++ +ANLPY I + + + Sbjct: 88 VKKRVMGTPLQNKLQVNGGDVMKMEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ Y RLSV K M+ + F P PKV S Sbjct: 142 PRYA---VLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V+ P P P + + + F ++ KTL Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTL 232 >gi|253745520|gb|EET01398.1| Dimethyladenosine transferase [Giardia intestinalis ATCC 50581] Length = 319 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 14/220 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++K I E + TV+EIG G GNLT LL A+ VI IE D + Sbjct: 8 KQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAIEIDPRM 66 Query: 83 FPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNW 137 LK + P + II D K+ + F++ ++N PYNI + ++F Sbjct: 67 VSELKKRIAAIPEYRGKFTIIHKDFTKMPATEIPTFDLC-----VSNCPYNISSGIVFRL 121 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P L+FQ E +R+ A+ Y RL+V T +K ++ +S + F P Sbjct: 122 LEIQ---PLPRKFVLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRNSFKP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 P V S V+ P P L+ +T+ F K+ KTL Sbjct: 179 PPNVDSAVVEMYPIGPPPGLDLDEFNGLTRILFSKKNKTL 218 >gi|256085330|ref|XP_002578875.1| dimethyladenosine transferase [Schistosoma mansoni] gi|238664262|emb|CAZ35113.1| dimethyladenosine transferase, putative [Schistosoma mansoni] Length = 313 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 13/219 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + ++ + E SG +++EIG+G GNLT LL G RKV E D + Sbjct: 21 QKTKGQHILKNPLVINTMVEKSGIKSTDSLLEIGSGTGNLTVKLLEKG-RKVYAFEIDPR 79 Query: 82 FFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ +S H +LEI+ DA+K F++ IANLPY I + + IS Sbjct: 80 MVSELQKRVQTSLHRTKLEILVGDAIKAKSWPKFDL-----CIANLPYKISSPFIQRLIS 134 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A + + ++ QKE +R+TA+ Y RLS + K + I+ + F P P Sbjct: 135 AGHG---FRAAVVMLQKEFADRLTAKSGDKLYCRLSASAQFHFKIEQLMKINRNSFRPPP 191 Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTL 237 +V S V+ P +P+P + S + + F ++ KT+ Sbjct: 192 RVDSAVVRIEPR-HPLPPVMHSEWDGLLRLVFARKNKTI 229 >gi|189218276|ref|YP_001938918.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum infernorum V4] gi|189185134|gb|ACD82319.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum infernorum V4] Length = 271 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 20/246 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI----TVIEIGAGPGNLTQML 65 +K++LS + P K +GQNFL+D N+ K I + L+G+ + EIG G G+LT+ Sbjct: 6 IKSLLSSNHLSPSKKLGQNFLIDQNLAKFIVRET--LEGVPLPQEIYEIGPGLGSLTEFF 63 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L + IE D+ F +L + S +P R E+IQ +AL F + + I ++ NL Sbjct: 64 LQQNVF-LKAIEIDRGFCKVLLERFSANP-RFELIQANALDFSFPQ--STHGKI-LVGNL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + LL PF + Q+EV R+ A+ + +G LSVL + + Sbjct: 119 PYTISSPLLAKLALLAV--PF-PRMIFTLQQEVASRLMAKTRTKDFGALSVLMQYFFEIK 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 M + VF+P PK+ S V+ F P +++ +K + AF R+ Q K+LG Sbjct: 176 KMRKVPKEVFYPVPKIESAVVFFEPKNTAF--RMDAPEKYSFYAFV--RRCFSQRRKKLG 231 Query: 246 GENLLH 251 +LH Sbjct: 232 --KILH 235 >gi|308160049|gb|EFO62557.1| Dimethyladenosine transferase [Giardia lamblia P15] Length = 319 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 27/261 (10%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++K I E + TV+EIG G GNLT LL A+ VI +E D + Sbjct: 8 KQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAVEIDPRM 66 Query: 83 FPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNW 137 LK + P + +I D K+ + F++ ++N PYNI + ++F Sbjct: 67 VSELKKRIAAIPEYRGKFTVIHKDFTKMPPNEIPPFDLC-----VSNCPYNISSGIVFRL 121 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P L+FQ E +R+ A+ Y RL+V T +K ++ +S + F P Sbjct: 122 LEIQPLP---RKFVLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRNSFKP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT-------------LRQSLKRL 244 P V S V+ P P L+ +T+ F K+ KT L ++ RL Sbjct: 179 PPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTRSLLNDLASNIARL 238 Query: 245 GGENLLHQAGIETNLRAENLS 265 N LH+ + NLS Sbjct: 239 DEINRLHKPAQPHQYESSNLS 259 >gi|260655277|ref|ZP_05860765.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1] gi|260629725|gb|EEX47919.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1] Length = 278 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 117/258 (45%), Gaps = 13/258 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + + + +GQNFL + ++ + + + TV+EIGAG G LT LL AR V E Sbjct: 20 RFVHRTQLGQNFLANGAVIDRAVARAELREDETVLEIGAGQGVLTSALLASPARFVHSFE 79 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++ L + +RL + D + + + P ++AN+PY+I T L++ Sbjct: 80 IDRRLEQWLAPLEC---SRLALHWGDVMSFPLAELDPL--PTAVVANIPYHITTPLIWK- 133 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + P L LL QKE ER+ A + L V A +SP F P Sbjct: 134 VLEELAPRGLTRLVLLVQKEAAERLCAPPRTKARYPLGVTIEAMGNAETFMKVSPGSFVP 193 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GENLLH 251 PKV S ++H I + L +L +++ ++AF +RRK SL+ G Sbjct: 194 PPKVWSALVH-IQLVRRHELALNALWRRLLRDAFAQRRKKALNSLEAAGRNKEETARAFQ 252 Query: 252 QAGIETNLRAENLSIEDF 269 I N RAE L+ + + Sbjct: 253 DCSISPNARAEELTTDQW 270 >gi|325962647|ref|YP_004240553.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans Sphe3] gi|323468734|gb|ADX72419.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans Sphe3] Length = 290 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 18/278 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + I P K +GQNF++D N +++I ++ TV+E+G G G+LT LL Sbjct: 15 ASDIRRLAEEIGIRPTKTLGQNFVIDGNTIRRIVAAADIGPDETVLEVGPGLGSLTLGLL 74 Query: 67 TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A V+ +E D + +K+ ++ DA+KV P ++ Sbjct: 75 DAAA-SVVAVEIDPVLAAKLPETVKEWRPGAAGNFHLVHADAMKVTELPV----QPTALV 129 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + +P L ++ Q EV +R+ A S YG SV W + Sbjct: 130 ANLPYNVAVPVVLHLLQ--YFPSLRHGLVMV-QDEVADRLAAGPGSKTYGVPSVKAAWYS 186 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK+ S ++ F P E + + AF +RRKTLR +L Sbjct: 187 QMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATTATREQVFAVVDAAFAQRRKTLRAAL 246 Query: 242 KRLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274 E L AG++ R E + I F +I Sbjct: 247 AGWAGGAPEAERCLVAAGVDPTARGEVIDIGAFAKIAE 284 >gi|124806998|ref|XP_001350883.1| apicoplast dimethyladenosine synthase, putative [Plasmodium falciparum 3D7] gi|23497013|gb|AAN36563.1| apicoplast dimethyladenosine synthase, putative [Plasmodium falciparum 3D7] Length = 639 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 14/194 (7%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 DG VIE+G G G +++ L + + + IE D + I IS P + I DD L+ Sbjct: 387 DGNGVIELGCGLGQISKYLFS-KYKNMTGIEIDSRALSI---ISRTMPG-FDFIHDDVLQ 441 Query: 107 VDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 +++++ N + + II NLP+ I +++LF + + + E + Q EVGERI A+ Sbjct: 442 INYKELSINKKTKLTIIGNLPFYITSQILFCLLD---FHKYIEQAIVTIQYEVGERIVAK 498 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-----PHLNPIPCCLE 220 N +Y LS+L T ++F I F+P PKV + V+ I + I C L Sbjct: 499 PNQKNYSILSILFHLFTYPYLLFKIPSKAFYPVPKVQAAVMKIIFKNHESYYKHINCNLL 558 Query: 221 SLKKITQEAFGKRR 234 LKKI + +F +RR Sbjct: 559 FLKKILKYSFQQRR 572 >gi|15811125|gb|AAL08808.1|AF308662_1 hypothetical dimethyl adenosine transferase [Ehrlichia ruminantium] Length = 124 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 4/124 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 +Y I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +K+I Sbjct: 4 NYMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLIS 63 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 IEKD + PI I + + E I DAL +D NI+ P+++IANLPY+I T LL Sbjct: 64 IEKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLR---NIAKPPVKVIANLPYSIATLLL 120 Query: 135 FNWI 138 WI Sbjct: 121 IKWI 124 >gi|297824837|ref|XP_002880301.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp. lyrata] gi|297326140|gb|EFH56560.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp. lyrata] Length = 352 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 14/201 (6%) Query: 15 SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +HY+ I K GQ+ L + ++ I + +G ++EIG G GNLT+ LL G ++ Sbjct: 20 NHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KE 78 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 VI +E D + L+ P NRL++IQ D LK + +F +I +AN+PY I Sbjct: 79 VIAVELDSRMVLELQRRFQGTPYSNRLKVIQGDVLKTELPRF-DI-----CVANIPYQIS 132 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F + P + +++Q+E R+ AQ Y RLSV T + + + + Sbjct: 133 SPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLLKV 189 Query: 191 SPHVFFPSPKVTSTVIHFIPH 211 + F P PKV S+V+ P Sbjct: 190 GKNNFRPPPKVDSSVVRIEPR 210 >gi|313681244|ref|YP_004058982.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994] gi|313154104|gb|ADR32782.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994] Length = 259 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 24/266 (9%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 I KK GQNFL D +L +I +S + EIG G G+LT+ L+ + + ++ D Sbjct: 8 IAKKKFGQNFLKDEAVLAQIIQSMPDTPH-RIAEIGPGLGDLTKYLVDVKSVTAFEVDTD 66 Query: 80 QQFFPILKDISSQHP-----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 + K ++ Q N L + D L + K + P ++ANLPY I T ++ Sbjct: 67 -----LCKHLTHQFADAIATNALTLRCGDVL--EHWKSELLDEPYDLVANLPYYIATNII 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 ++ P +L ++ Q+EV E+ +A +G LSV+ +A ++ + P Sbjct: 120 LKALA----DPACRNLLVMIQREVAEKFSAAPGERAFGALSVIAQSVGEAEIVLHVPPTA 175 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253 F P+PKV S V+ N E + + AF + RKTL ++L +L QA Sbjct: 176 FEPAPKVDSCVLLISKRTNRND---EGFEDFLRTAFTQPRKTLHKNLSSRYDGTVLSQAF 232 Query: 254 ---GIETNLRAENLSIEDFCRITNIL 276 +E ++R L DF R+ ++ Sbjct: 233 ETLELERSIRPHQLDTSDFHRLYTLI 258 >gi|207092922|ref|ZP_03240709.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_AG0C1] Length = 261 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 109/234 (46%), Gaps = 33/234 (14%) Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPI 85 +FL D + L +I + L+ + +IEIG G G+LT LL K I+ + ++ Sbjct: 1 HFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDSNLCEKMRSK 60 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 LK + + P LE+++ DAL F P +I+NLPY I TRL+ N + P Sbjct: 61 LK--AQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLNALKD----P 108 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 L ++ QKEV + A+ + LSVL AT++FD+ P F P PKV S+V Sbjct: 109 KCRGLLVMTQKEVALKFCARDSQ---NALSVLAHAIGDATLLFDVPPSAFSPPPKVFSSV 165 Query: 206 IHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQSLKR 243 I L P ESL+K + F RKTL +LK+ Sbjct: 166 FEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKACFSSPRKTLSNNLKK 219 >gi|15226591|ref|NP_182264.1| dimethyladenosine transferase, putative [Arabidopsis thaliana] gi|2529685|gb|AAC62868.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|14532650|gb|AAK64053.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|21280901|gb|AAM44912.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|330255745|gb|AEC10839.1| dimethyladenosine transferase [Arabidopsis thaliana] Length = 353 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 14/201 (6%) Query: 15 SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +HY+ I K GQ+ L + ++ I + +G ++EIG G GNLT+ LL G ++ Sbjct: 20 NHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KE 78 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 VI +E D + L+ P NRL++IQ D LK + +F +I +AN+PY I Sbjct: 79 VIAVELDSRMVLELQRRFQGTPFSNRLKVIQGDVLKTELPRF-DI-----CVANIPYQIS 132 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F + P + +++Q+E R+ AQ Y RLSV T + + + + Sbjct: 133 SPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLLKV 189 Query: 191 SPHVFFPSPKVTSTVIHFIPH 211 + F P PKV S+V+ P Sbjct: 190 GKNNFRPPPKVDSSVVRIEPR 210 >gi|78779250|ref|YP_397362.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9312] gi|119365046|sp|Q31B19|RSMA_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78712749|gb|ABB49926.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9312] Length = 276 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 137/262 (52%), Gaps = 14/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ IE D+ Sbjct: 9 KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLDSEIKKLHAIELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139 +L D + ++ + Q D L V+ + +I+ I ++IAN+PYNI +L +I Sbjct: 69 LINLLND-KFNNNDKFSLQQGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124 Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P Sbjct: 125 LGIIRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRIQLLSKIKRICDVPPSSFSPP 184 Query: 199 PKVTSTVIHFIPHLNP--IPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLLH 251 PKV S+++ F P N + LE + K+ + +F RRK LR +L L E L Sbjct: 185 PKVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEINELSE 244 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 + + NLR +++SI + ++ Sbjct: 245 SSKVCFNLRPQDISIHQWIKLA 266 >gi|255948106|ref|XP_002564820.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591837|emb|CAP98092.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255] Length = 386 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 18/265 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + KT +H +GQ+ L + I I E + V+EIG G GNLT +L Sbjct: 21 AAKTKAAHSIFKMNTDIGQHVLKNPGIAAAIVEKAELKQSDVVLEIGPGTGNLTAKILE- 79 Query: 69 GARKVIVIEKDQQFFP-ILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A+K I +E D + + K S+ + RLE+I D +K + +F++ I+N P Sbjct: 80 KAKKCIAVELDPRMAAEVTKRFQSTPYQKRLEVILGDVMKTELP-YFDV-----CISNTP 133 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + L F ++ P S L+FQ+E R+ A+ Y RLSV K Sbjct: 134 YQISSPLTFKLLATSPAP---RSCILMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDH 190 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + + + F P P+V S+VI +P NP P E + + F ++ KTLR S +G Sbjct: 191 IMKVGKNNFKPPPQVESSVIRMVPK-NPRPQVNYEEWDGLLRIVFVRKNKTLRSSF--IG 247 Query: 246 GENLLH--QAGIETNLRAENLSIED 268 +++ +A T ++ +ED Sbjct: 248 TSSIMELLEANYRTWCAQNDIPVED 272 >gi|149194711|ref|ZP_01871806.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2] gi|149135134|gb|EDM23615.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2] Length = 233 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 15/191 (7%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 VIEIG G G+LT+ LL R+V+ E D++ ILK + PN L + D L+ E Sbjct: 8 VIEIGPGLGDLTEKLLE--KRQVLAYEIDRELCEILK---KKFPN-LNLKCGDVLEYWQE 61 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 N + +IANLPY I T ++ + +++ +L QKEV ++ +A+ Sbjct: 62 SLAN--TKYDLIANLPYYIATNIILRALKDKNA----QNILVLIQKEVADKFSAKVGDKI 115 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230 YG LS+L +FDI P F P+PKV S+VI F + E K + AF Sbjct: 116 YGSLSILASQVANVKKLFDIPPGAFVPAPKVMSSVILFEKFKDSYN---EDFAKFLKIAF 172 Query: 231 GKRRKTLRQSL 241 RKTL ++L Sbjct: 173 ANPRKTLNKNL 183 >gi|300932590|ref|ZP_07147846.1| dimethyladenosine transferase [Corynebacterium resistens DSM 45100] Length = 256 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 34/246 (13%) Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF 112 G G+LT LL V +E D + L + + + +L +I+ DALKV F Sbjct: 6 GWGSLTLALLE-AVETVTAVEIDSRLAQKLPETVAHYAAGAGEKLGVIEMDALKVTRADF 64 Query: 113 FNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 S P+ ++ANLPYN+ +L + + P + + ++ Q EV +R+ AQ S Sbjct: 65 EAASRPLPTALVANLPYNVSVPVLLHLLEEF---PTIDRVLVMVQLEVADRLAAQPGSKI 121 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------------IPHLNPIPC 217 YG SV + + I +VF+P+PK+ S ++ P L+ Sbjct: 122 YGVPSVKASYYGNVSRAATIGKNVFWPAPKIDSGLVRIDRYRAAERPWAEGAPELH--TS 179 Query: 218 CLESLKK----ITQEAFGKRRKTLRQSLK-RLGG----ENLLHQAGIETNLRAENLSIED 268 +SL+K + AF +RRKTLR +L GG E L AGI+ R E LS+ D Sbjct: 180 AEQSLRKETFALADAAFLQRRKTLRAALSGHFGGAPQAEAALLAAGIDPKQRGEKLSVVD 239 Query: 269 FCRITN 274 F R+ Sbjct: 240 FVRLAT 245 >gi|310793644|gb|EFQ29105.1| dimethyladenosine transferase [Glomerella graminicola M1.001] Length = 378 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 37/282 (13%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGI----------TVIEIGAGPGNLTQMLLTLGA 70 P + F + N+ + I ++ G D I TV+EIG G GNLT +L + Sbjct: 22 PSQKTNNVFKFNTNVGQHILKNPGVADAIVHKAELKPTDTVLEIGPGTGNLTVRILE-KS 80 Query: 71 RKVIVIEKDQQFFP-ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +K+I IE D + + K + R LE++ DA+KVD+ F +I+N PY Sbjct: 81 KKLIAIEFDPRMAAEVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQ 134 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L+F ++ P L+FQ E G+R+ A+ YGRLSV + + + Sbjct: 135 ISSPLVFKMLAMPKPP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVM 191 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 +S F P P+V S V+ +P E + + F ++ +T+R S LG Sbjct: 192 KVSKANFRPPPQVDSCVVRIVPKQGAERPTIAFEEFDGLLRICFNRKNRTMRASW--LGT 249 Query: 247 ENLLHQAGIETNLRA----ENLSIEDFCRITNILTDNQDIAI 284 + +L +E N R N+ ++D ++ D++D A+ Sbjct: 250 KEVLQM--LEKNYRTWAAMNNVPLDD-----TLVEDDEDEAM 284 >gi|122937785|gb|ABM68619.1| AAEL010575-PA [Aedes aegypti] Length = 266 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 13/218 (5%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107 V+EIG G GN+T LL +KV+ E D + L+ P ++L+I+ D LK Sbjct: 12 VVLEIGPGTGNMTVKLLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKA 70 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D FF+ +AN+PY I + +F + PF+ L+FQ E +R+ A+ Sbjct: 71 DLP-FFDCC-----VANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPG 121 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 Y RLSV T + M+ + + F P PKV S+V+ P P +T+ Sbjct: 122 DKLYCRLSVNTQLLARVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPINYTEWDGLTR 181 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQA-GIETNLRAENL 264 AF ++ KTL + K+ L Q ++ +L+ ++L Sbjct: 182 IAFLRKNKTLAAAFKQTSVMTALEQNFKMQCSLKNQDL 219 >gi|194388854|dbj|BAG61444.1| unnamed protein product [Homo sapiens] Length = 243 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 12/220 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLLLHR- 145 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV Sbjct: 146 --PFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 S+V+ P P P + + + F ++ KTL + K Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243 >gi|289548364|ref|YP_003473352.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484] gi|289181981|gb|ADC89225.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484] Length = 247 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 117/259 (45%), Gaps = 18/259 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+ L+ +LKKI E G +G V+EIG G GNLT +LL ++ IE D Sbjct: 4 KKQYGQHLLVSTGVLKKIVEELGVEEGDKVVEIGPGTGNLTLLLLQTPLAELHAIELDPD 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 IL+ + + RL++ DA + ++ ++++ NLPYN+ + ++ N + Sbjct: 64 MLKILQRVEDK---RLQLHHADASRF---PLCSLGENLKVVGNLPYNVASLIVENTVLHH 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + QKEVGE++ + LS + + P F P PKV Sbjct: 118 RCIPLA---LYMVQKEVGEKLQEGASW-----LSFFVRTFYDVFYIMSVPPQFFRPPPKV 169 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S ++ + L KK F RRK L+ L+ ++L + G++ LR Sbjct: 170 NSALVKLVRKDTLPQLDLFEYKKFLDILFSHRRKALKNKLE----SSILEKVGVDPMLRV 225 Query: 262 ENLSIEDFCRITNILTDNQ 280 E L + R+ + D++ Sbjct: 226 EQLDLNTVLRLFAVWLDSK 244 >gi|309798999|ref|ZP_07693256.1| dimethyladenosine transferase [Streptococcus infantis SK1302] gi|308117403|gb|EFO54822.1| dimethyladenosine transferase [Streptococcus infantis SK1302] Length = 145 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + +IEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNIIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD K F N PI+++ANLP Sbjct: 70 -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAKHIQNFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISA 140 Y I T +L + I + Sbjct: 128 YYITTPILMHLIES 141 >gi|242309135|ref|ZP_04808290.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489] gi|239524176|gb|EEQ64042.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489] Length = 242 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 20/252 (7%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90 L I++ I + + L+ +IEIGAG G+LT LL LG + E D++ P LK+ Sbjct: 3 LQIVQSIPKEALDLE---LIEIGAGLGDLTNKLLGLG--NITAYEVDEELLPYLKERFKK 57 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + +LE+ D +++ ++ P +I+NLPY I T L+ I P + Sbjct: 58 ALESKQLELKIGDVMEI-WKGNSLRDKPYFLISNLPYYIATLLVIKAIKD----PLCKGC 112 Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 ++ QKEV + A +N + LSVLT +A ++F++ P F P PKVTS V F+ Sbjct: 113 VVMTQKEVALKFCASENQSDFSALSVLTQSVGEAKLLFEVPPIAFVPQPKVTSAV--FLI 170 Query: 211 HLNPI-PC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENL 264 N I P LE+L+ + + +F RKT+ +L + + +L I N R + Sbjct: 171 QKNQILPSDFLEALEGLLKISFNAPRKTIFNNLSKNYSKQKVLEVLEDLQITPNKRPHEI 230 Query: 265 SIEDFCRITNIL 276 + R+ IL Sbjct: 231 DTATYHRLLKIL 242 >gi|149174955|ref|ZP_01853579.1| dimethyladenosine transferase [Planctomyces maris DSM 8797] gi|148846292|gb|EDL60631.1| dimethyladenosine transferase [Planctomyces maris DSM 8797] Length = 306 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 34/280 (12%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+ +GQNFL+DLNI++ + E V+E+G G G +T + A VI +E D+ Sbjct: 23 PRSDLGQNFLIDLNIIEYVVEHGHIQPNDIVLEVGTGTGGMTTFMAQQAAH-VITVEYDR 81 Query: 81 QFFPILKDISSQHPNRLEIIQDDALK------------VDFEKFFNISSPIRIIANLPYN 128 + ++ + ++ N + ++ DALK + + + S ++++ANLPYN Sbjct: 82 NMHTLAQEATQKYDN-ITLLNCDALKNKNHMSPIVLDEIAAQLEAHPGSQLKLVANLPYN 140 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T ++ N +++D W + + Q E+G ++ + S +YG LSV + ++ Sbjct: 141 VATPIISNIVASDLP---WNRMVVTIQYELGLKMACKPTSSNYGALSVWLQSQCFVKLLK 197 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI-----TQEAFGKRRKTLRQSLKR 243 + P VF+P P V S ++ P NP P + + ++ + F RRK +R +L Sbjct: 198 KLGPTVFWPRPGVDSAIVQLTP--NP-PLKQKIVDRVFFQDFLRRVFQHRRKLMRSTLVG 254 Query: 244 LGGENL--------LHQAGIETN-LRAENLSIEDFCRITN 274 + + L L GI+ RAE L++ + + N Sbjct: 255 MYSKQLPKADVDAILLSHGIDKEKTRAEELNVPELIELAN 294 >gi|302519786|ref|ZP_07272128.1| dimethyladenosine transferase [Streptomyces sp. SPB78] gi|302428681|gb|EFL00497.1| dimethyladenosine transferase [Streptomyces sp. SPB78] Length = 284 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 11/204 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K GQNF++D N +++I ++ + TV+E+G G G+LT LL + Sbjct: 13 IRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPGLGSLTLALLEVA 72 Query: 70 ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A V +E D L + + ++ DAL+V + +P ++ANL Sbjct: 73 A-DVTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---RELPGPAPTALVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + + + +P +L ++ Q EV +R+ A S YG SV W Sbjct: 129 PYNVAVPVLLHML--EHFPSVERTL-VMVQAEVADRLAAPPGSRVYGVPSVKAAWYAHVK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFI 209 I VF+P+P V S ++ + Sbjct: 186 RAGSIGRSVFWPAPNVDSGLVSLV 209 >gi|323445795|gb|EGB02231.1| hypothetical protein AURANDRAFT_35437 [Aureococcus anophagefferens] Length = 192 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 18/186 (9%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 S + + K +GQNFL + I+ I E + +V+EIG G GNLT LL A+K+ Sbjct: 19 SSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLA-QAKKLT 77 Query: 75 VIEKDQQFFPILKDISSQHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +E D++ ++++++ + N RLE++ D LKV +F++ +ANLPYNI Sbjct: 78 CVEFDRR---MVREVAKRVENDPRKHRLEMVHGDVLKVALP-YFDVC-----VANLPYNI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LF ++ P + S ++FQ+E +R++A+ Y RLSV T K T + Sbjct: 129 SSPFLFKLLA---HRPHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIK 185 Query: 190 ISPHVF 195 + + F Sbjct: 186 VGRNNF 191 >gi|321479018|gb|EFX89974.1| hypothetical protein DAPPUDRAFT_205158 [Daphnia pulex] Length = 308 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I++ + E + TV+EIG G GN+T LL +++V+ E D + Sbjct: 29 LGQHILKNPKIVESMVEKAALRSTDTVLEIGPGTGNMTVKLLE-RSKRVVACEVDPRMVA 87 Query: 85 ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ + + +L I+ D LK + FF++ +ANLPY I + +F + Sbjct: 88 ELQKRVLGTHLQPKLHIMVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 138 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P + L+FQ+E ER+ A+ Y RLSV T K + + + F P PKV Sbjct: 139 HRPMFRCALLMFQREFAERLIAKPGDKLYCRLSVNTQLLAKVDHVLKVGKNNFRPPPKVE 198 Query: 203 STVIHFIPHLNPIP 216 S+V+ P NP P Sbjct: 199 SSVVRIEPK-NPAP 211 >gi|255513974|gb|EET90238.1| ribosomal RNA adenine methylase transferase [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 277 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 17/193 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I PK+ +GQNFL KIAE +G DG +E+GAG G LT+ L + A V+ +E Sbjct: 19 IRPKRKLGQNFLKS----PKIAEFEAGYADGKNALELGAGLGVLTRKLCEV-ANSVVAVE 73 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD+ F LK + H L++I D +D E F +++N+PYNI +++L W Sbjct: 74 KDKALFDRLKMNLAFH--NLKLINADFFDLDPEVFKKCDI---MVSNIPYNISSKVLM-W 127 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 +S L Q+E + I A+ S Y +LSV + + + +S F+P Sbjct: 128 LSEHKM-----QAVLCLQREFVDHIIARPGSRKYSKLSVFSQLNFRIYPIKRVSRLSFYP 182 Query: 198 SPKVTSTVIHFIP 210 +PKV S++I P Sbjct: 183 APKVDSSIILLDP 195 >gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group] Length = 603 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 40/246 (16%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 60 TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDA 119 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119 GA V +EKD+ ++ D +L+II++D K + EK + Sbjct: 120 GA-TVFAVEKDKHMATLVNDRFGS-TEQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYA 177 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178 ++++NLP+N+ T ++ + + + LL Q E R A +P Y ++V Sbjct: 178 KVVSNLPFNVSTEVVKLLLPMGD---VFSVMVLLLQDETALRFADASIQTPEYRPINVFV 234 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + ++ F + FFP PKV S AF +RK LR Sbjct: 235 NFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKMLR 269 Query: 239 QSLKRL 244 +SL+ L Sbjct: 270 KSLQHL 275 >gi|297526046|ref|YP_003668070.1| ribosomal RNA adenine methylase transferase [Staphylothermus hellenicus DSM 12710] gi|297254962|gb|ADI31171.1| ribosomal RNA adenine methylase transferase [Staphylothermus hellenicus DSM 12710] Length = 268 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 138/270 (51%), Gaps = 31/270 (11%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + + P+K + QNF+++ I+ + L T++EIGAG G+L+ L ++ Sbjct: 19 ILRKHGVRPRKKLSQNFIVNPRIIHDFLKHV--LPNKTLLEIGAGIGSLSYYLSRKVSKY 76 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 + IE D++ I +D+ S R +I +AL +D+ S ++ +N PY+I + Sbjct: 77 SVFIEIDERLSRICRDLISP---RGILINGNALDLDW-------SVEQVFSNAPYHITSD 126 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS- 191 ++ +++ E +FQK+V +R+ A+ + YGR++VLT ++FDI Sbjct: 127 IIVKTARSNSV----EYAVFVFQKDVVDRLLARPGTKEYGRITVLT------RLVFDIER 176 Query: 192 -----PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 P F+P P+V+S +I + + ++++T+ F KRRK +++ R G Sbjct: 177 GPTYPPVFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRKKALKTIMRELG 235 Query: 247 ENL--LHQAGIETNLRAENLSIEDFCRITN 274 ++ + + G++ R +LS E F ++ Sbjct: 236 LSIDDVRRLGVDEKARVYDLSPEVFLKLAE 265 >gi|239610737|gb|EEQ87724.1| dimethyladenosine transferase [Ajellomyces dermatitidis ER-3] Length = 330 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 22/226 (9%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107 TV+EIG G GNLT +L A+KVI +E D + + P RLE++ D +K Sbjct: 10 TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F++ I+N PY I + L F ++ D P L+FQ+E R+ A+ Sbjct: 69 DLP-YFDVC-----ISNTPYQISSPLTFKLLAIDPAP---RVCILMFQREFAMRLFAKPG 119 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKIT 226 Y RLSV + + + + F P P V S+V+ +P NP P + + Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLL 178 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268 + AF ++ KT+R S LG ++L +E+N R N+ +ED Sbjct: 179 RVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRTWCAQNNIPVED 220 >gi|147864926|emb|CAN81538.1| hypothetical protein VITISV_011853 [Vitis vinifera] Length = 336 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%) Query: 16 HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 HY+ + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + V Sbjct: 20 HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I +E D + L+ P NRL++IQ D L+ D +F+I +AN+PY I + Sbjct: 79 IAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLP-YFDI-----CVANIPYQISS 132 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L F ++ P + ++FQ+E R+ AQ Y RLSV Sbjct: 133 PLTFKLLA---HRPVFRCAVIMFQREFAMRLVAQPGDNLYCRLSV--------------G 175 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + F P PKV S+V+ P P + + + F ++ KTL Sbjct: 176 KNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTL 221 >gi|126465678|ref|YP_001040787.1| dimethyladenosine transferase [Staphylothermus marinus F1] gi|126014501|gb|ABN69879.1| dimethyladenosine transferase [Staphylothermus marinus F1] Length = 268 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 138/270 (51%), Gaps = 31/270 (11%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L + I P+K + QNF+++ I+ + L T++EIGAG G+L+ L ++ Sbjct: 19 LLRKHGIRPRKKLSQNFIVNPRIIHDFLKHV--LPNKTLLEIGAGIGSLSYYLSRKASKY 76 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 + IE D++ I +D+ S R +I +AL +D+ S ++I+N PY+I + Sbjct: 77 SVFIEIDERLSRICRDLISP---RGILINGNALDLDW-------SVEQVISNAPYHITSD 126 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS- 191 ++ +++ +FQK+V +R+ A+ + YGR++VLT ++FDI Sbjct: 127 IIVKTARSNS----VGYAVFVFQKDVVDRLLARPGTKEYGRITVLT------RLVFDIEK 176 Query: 192 -----PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR-KTLRQSLKRLG 245 P F+P P+V+S +I + + ++++T+ F KRR K L+ + LG Sbjct: 177 GPVYPPIFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRKKALKTIMSELG 235 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITN 274 +++ + GI+ R +LS E F ++ Sbjct: 236 LNIDVIRRLGIDDKARVYDLSPEVFLKLAE 265 >gi|124023319|ref|YP_001017626.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9303] gi|166221689|sp|A2CA51|RSMA_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123963605|gb|ABM78361.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 280 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 115/254 (45%), Gaps = 13/254 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K Q++L+D +L +I +++ ++E+G G G LT+ LL A V +E D+ Sbjct: 9 RKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVELDRD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + R + + D L V + + +++AN+PYNI LL + Sbjct: 69 LVSGLRQRFADQ-ARFSLQEGDVLSVPL-TLADGRAANKVVANIPYNITGPLLERLLGRL 126 Query: 142 TWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P P+ + L LL QKEV +RI A + LSV T + + P F P Sbjct: 127 DRPVDHPY-QRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLAHCTTVCPVPPRSFKPP 185 Query: 199 PKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE--NLLH 251 PKV S VI P P + ++ + ++AF RRK LR +L ++ E L Sbjct: 186 PKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNALAD 245 Query: 252 QAGIETNLRAENLS 265 GI R + LS Sbjct: 246 DLGISLQQRPQELS 259 >gi|315453543|ref|YP_004073813.1| putative dimethyladenosine transferase [Helicobacter felis ATCC 49179] gi|315132595|emb|CBY83223.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Helicobacter felis ATCC 49179] Length = 292 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 125/278 (44%), Gaps = 40/278 (14%) Query: 25 MGQNFLLDLNILKKIAES---SGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80 +GQ+FL D L +I +S + + ++EIG G G+LT LL LG++ +I E D+ Sbjct: 4 LGQHFLHDAFYLDQILQSIPYEHFNNEVQLVEIGVGLGDLTTRLLDRLGSKTLIAYEVDR 63 Query: 81 QFFPILKD-ISSQHPNRLEIIQDDA------------------LKVDFEKFFNISSPIRI 121 LK +S RLE++ D L+V F P + Sbjct: 64 ALAIGLKSRLSPASWARLELVVGDVMERKGVGNGTYDVLANTRLRVPRVGFL-CDRPYFL 122 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ++NLPY I T ++ + + ++ Q EVG + A S YG LSVL G Sbjct: 123 VSNLPYYIATPIIARALRDS----LCVGMVVMTQLEVGLKFCAHVGSKDYGALSVLAGLT 178 Query: 182 -TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT-----QEAFGKRRK 235 T+ + F++ F P PKV S+VI I H P+ C SL+ I ++ F RK Sbjct: 179 CTRRELCFEVPKEAFNPPPKVRSSVIALIKH--PLQDCAPSLEVIELETALKQCFQANRK 236 Query: 236 TLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDF 269 TL +LK + + L + G++ R LS D+ Sbjct: 237 TLSNNLKGICSPEVLQTFLSRHGLKPQARPHELSPTDY 274 >gi|283780372|ref|YP_003371127.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068] gi|283438825|gb|ADB17267.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068] Length = 308 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 149/303 (49%), Gaps = 32/303 (10%) Query: 3 MNNKSHSLKTILSHYK---IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M + ++ + S ++ I P+ GQNFL+DLN+L +A+++ + V+E+G G G Sbjct: 1 MTSARQTVSYLTSRFREAGIRPEIRHGQNFLVDLNLLDLLADAAQITEDDVVLEVGTGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK---------VDFE 110 +LT L A +V+ IE D++ + ++ N + ++ DAL+ +D Sbjct: 61 SLTSRLAERAA-EVVTIEIDERLAAMAEEELEDFDN-VTLVLRDALESKHKLSTEVMDIV 118 Query: 111 KFFNISSPIR---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 + +P R + ANLPYN+ T ++ N +++D P S+T+ QKE+ +RI A Sbjct: 119 RAKLAEAPGRRFKLAANLPYNVATLIISNLLASDPCPV---SMTVTIQKELADRIVAPHG 175 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKK 224 + Y LS+ + +A ++ I P VF+P PKV S ++H + H + L Sbjct: 176 TKDYSGLSIWVQSQCEAKIVRIIPPQVFWPPPKVHSAILH-LEHSQALASQLRDPAYFHS 234 Query: 225 ITQEAFGKRRKTLRQSLKRL-GGE---NLLHQAGIETNL----RAENLSIEDFCRITNIL 276 + F RRK LR L +L G+ N + Q +E L RAE L + +++ L Sbjct: 235 FIRAIFLHRRKFLRGVLAKLFDGQLTKNDIDQLFVEKQLTPETRAEELPVATLVELSHWL 294 Query: 277 TDN 279 D Sbjct: 295 LDR 297 >gi|255023855|ref|ZP_05295841.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-208] Length = 143 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 7/131 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A + Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127 V+ E DQ+ PIL D S + N ++++ D LK D E+F P++I+ANLPY Sbjct: 73 VVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLPY 131 Query: 128 NIGTRLLFNWI 138 + T ++ + Sbjct: 132 YVTTPIILKLL 142 >gi|149003647|ref|ZP_01828512.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] gi|147758379|gb|EDK65379.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] Length = 146 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 6/134 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A Sbjct: 10 KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANLP Sbjct: 70 -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127 Query: 127 YNIGTRLLFNWISA 140 Y I T +L + I + Sbjct: 128 YYITTPILMHLIES 141 >gi|126459717|ref|YP_001055995.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548] gi|126249438|gb|ABO08529.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548] Length = 230 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 34/242 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 ++ Q+FL +++AE L G+ V+E+G G G LT + L +R V IE D Sbjct: 4 RRRFSQHFLKS----REVAEFIVGLVPPGLDVLEVGPGRGALT-IPLAEKSRVVYAIEID 58 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNW 137 + + +++ P + +I DAL+V++ ++F ++N+PY I + LL Sbjct: 59 RG---LAEELRRAAPPNVVVIVGDALEVEWPPAQYF--------VSNVPYEITSPLLLK- 106 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ P + QKEV +R+ A+ + YGRL+V ++ + PH F P Sbjct: 107 LARHRLP-----AVVTVQKEVADRLAAEPGTEEYGRLTVAVRCHYDVEVVRVLPPHAFSP 161 Query: 198 SPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 PKV S V+ L P P C+ E ++ T F RRKTLR+ LK E + Q Sbjct: 162 PPKVYSAVV----RLTPRPPCIEDFEGFQRFTAALFSARRKTLRR-LKLADSEKRIFQLS 216 Query: 255 IE 256 +E Sbjct: 217 LE 218 >gi|327400294|ref|YP_004341133.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus veneficus SNP6] gi|327315802|gb|AEA46418.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus veneficus SNP6] Length = 250 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 16/217 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ ++ I ++IA + TV+E+G G G LT +LL A KV IE D +F Sbjct: 5 KSKGQH-IVSKAIARRIAGYAELSKKDTVLEVGCGTGVLTSVLLE-RAGKVYGIEIDARF 62 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +L++ ++ R +I DA+KV+F F + ++N+PY I + L F + Sbjct: 63 VKLLQEKFAKEIDEGRFILIHGDAMKVEFPPFN------KFVSNIPYFISSPLTFKLLRH 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D ++ +++Q+E ER+ A+K +YGRLSV+ K ++ +S F P P Sbjct: 117 D-----FDVAVVMYQREFAERLVARKGE-NYGRLSVVVKAYAKPEIVEYVSRKAFRPPPS 170 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V S V+ I L+ + + + F +RRK L Sbjct: 171 VDSAVVRLIKKPEIEVENLQIFEDLVRYCFSRRRKQL 207 >gi|30698221|ref|NP_201437.2| ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|21539437|gb|AAM53271.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana] gi|31711838|gb|AAP68275.1| At5g66360 [Arabidopsis thaliana] gi|332010820|gb|AED98203.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] Length = 352 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL I SS TV+EIG G GNLT LL A+ V+ +E D++ Sbjct: 65 KSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVELDKRM 123 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ S H ++L IIQ D LK DF F ++AN+PYNI + L+ + Sbjct: 124 VEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSPLVAKLVYG 177 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + S TLL QKE R+ A + RL+V Sbjct: 178 SNT---FRSATLLLQKEFSRRLLANPGDSDFNRLAV 210 >gi|328855713|gb|EGG04838.1| hypothetical protein MELLADRAFT_49047 [Melampsora larici-populina 98AG31] Length = 333 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 15/221 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L +KV+V+E D + Sbjct: 51 LGQHILKNPLVAQSIVDKANLKTTDQVLEVGPGTGNLTVKILE-KCKKVLVVEMDPRMAS 109 Query: 85 ILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L P +L+I+ D LK D +F++ I+N PY I + L+F ++ Sbjct: 110 ELSKRFQGKPQEMKKLDILVGDFLKTDLP-YFDV-----CISNTPYQISSPLVFKLLAHR 163 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQ+E R+ A+ S + RLSV +K + + F P P V Sbjct: 164 ---PIFRVAVLMFQREFALRLCARPGSSLWCRLSVNVQLYSKVNHLMKVGKANFRPPPLV 220 Query: 202 TSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 S+VI P +NP P E +T+ F +R KT+R S Sbjct: 221 ESSVIKLEP-INPPPAIKFEEFDGLTRICFNRRNKTIRASF 260 >gi|78778284|ref|YP_394599.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251] gi|119365861|sp|Q30NR7|RSMA_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78498824|gb|ABB45364.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251] Length = 267 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 18/258 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI+ KK GQNFL D ++L+KI E+ + D ++EIG G G+LT+ L+ + + V E Sbjct: 3 KIVAKKKFGQNFLKDESVLQKIIEAMPNNDN-KIVEIGPGLGDLTKFLVDV--KSVDAFE 59 Query: 78 KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D +L++ + +L I D L + I ++ANLPY I T ++ Sbjct: 60 VDTDLCKVLQNKFEREIATKQLRIHCGDVLTAWKSEL--IEESYDLVANLPYYIATNIIL 117 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ P +++ ++ Q EV E+ A +G LS++T +A ++ ++ P F Sbjct: 118 KALA----DPKCKNILVMVQLEVAEKFCANDGDKVFGSLSIITQSVGEAHIVVNVPPSAF 173 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA-- 253 P PK+ S V + E + ++ AF + RKTL ++L + +L + Sbjct: 174 EPQPKINSAVFLIQKKSDRSDKDFEDMLRV---AFTQPRKTLMKNLSSTYDKAMLQEIFE 230 Query: 254 --GIETNLRAENLSIEDF 269 + +R +S D+ Sbjct: 231 KLSLAQTIRPHQVSTNDY 248 >gi|268529208|ref|XP_002629730.1| Hypothetical protein CBG00961 [Caenorhabditis briggsae] gi|187038646|emb|CAP22289.1| hypothetical protein CBG_00961 [Caenorhabditis briggsae AF16] Length = 308 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 12/214 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E S TV+E+G G GNLT +L + A+ VI E D + Sbjct: 29 GQHILKNPGVVNAIVEKSALKSTDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +K P +L++ D +K ++ FF++ +ANLPY I + + + Sbjct: 88 VKKRVMGTPLQTKLQVNGGDVMKQEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ Y RLSV K M+ + F P PKV S Sbjct: 142 PRYA---VLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 V+ P P P + + + F ++ KTL Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTL 232 >gi|307722062|ref|YP_003893202.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294] gi|306980155|gb|ADN10190.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294] Length = 271 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 14/230 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ ++ KK GQNFL D ++L++I E+ D ++EIG G G+LT+ L+ + + V Sbjct: 1 MNRESVVAKKKFGQNFLKDQSVLRQIVEAMPKNDN-KIVEIGPGLGDLTKFLVDV--KSV 57 Query: 74 IVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 E D +L+ + RL I D L+ + +S P ++ANLPY I T Sbjct: 58 EAFEVDTDLCKLLQSTFKEEIATKRLHINCGDVLEAWQSEL--VSEPYDLVANLPYYIAT 115 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ ++ P +++ ++ Q EV E+ A +G L V+ A ++ + Sbjct: 116 NIILKALA----DPMCKNILVMVQLEVAEKFCASSGEKVFGSLGVIAQSVGTAQIVVKVP 171 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 P F P PKV S V + E + ++ AF + RKTL ++L Sbjct: 172 PTAFDPQPKVDSAVFLIQKKRDRNDKEFEDMLRV---AFSQPRKTLVKNL 218 >gi|302421778|ref|XP_003008719.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102] gi|261351865|gb|EEY14293.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102] Length = 346 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 12/188 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + I +G TV+EIG G GNLT +L A+K+I IE D + Sbjct: 35 VGQHILKNPGVADAIVAKAGLKPTDTVLEIGPGTGNLTVRILE-NAKKLIAIEFDPRMAA 93 Query: 85 -ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + K + R LE++ DA+KVD+ F +I+N PY I + L+F ++ Sbjct: 94 EVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQISSPLVFKMLAMPK 147 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ E G+R+ A+ YGRLSV + + + +S F P P+V Sbjct: 148 PP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVMKVSKANFRPPPQVD 204 Query: 203 STVIHFIP 210 S V+ +P Sbjct: 205 SCVVRIVP 212 >gi|315050182|ref|XP_003174465.1| dimethyladenosine transferase dimethyltransferase [Arthroderma gypseum CBS 118893] gi|311339780|gb|EFQ98982.1| dimethyladenosine transferase dimethyltransferase [Arthroderma gypseum CBS 118893] Length = 377 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 39 IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P RLE++ D +K + +F++ I+N PY I + L F ++ Sbjct: 98 ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDV-----CISNTPYQISSPLTFKLLATTP 151 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ +P + E + + AF ++ KTLR S Sbjct: 209 SSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247 >gi|296813149|ref|XP_002846912.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae CBS 113480] gi|238842168|gb|EEQ31830.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae CBS 113480] Length = 376 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 39 IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P RLE++ D +K + +F++ I+N PY I + L F ++ Sbjct: 98 ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDVC-----ISNTPYQISSPLTFKLLATTP 151 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ +P + E + + AF ++ KTLR S Sbjct: 209 SSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247 >gi|47219520|emb|CAG09874.1| unnamed protein product [Tetraodon nigroviridis] Length = 286 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 39/161 (24%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y + +K + QNFLLDL + KI +G L G V E+G GPG LT+ +L GA ++V+ Sbjct: 25 YNLRAEKQLSQNFLLDLKLTDKIVRQAGCLKGAHVCEVGPGPGGLTRSILNAGAADLLVV 84 Query: 77 EKDQQF------------------------------FPILKDISSQHPNRLEIIQDDALK 106 EKD +F P+L+ +S P RL I+ D L Sbjct: 85 EKDSRFIPGLKVKLAAGTASSRLFVQPSRCDGVAFNIPVLQLLSEAAPGRLRIVHGDILT 144 Query: 107 VDFEK-FFNISSP--------IRIIANLPYNIGTRLLFNWI 138 ++ F ++S + +I NLP+N+ T L+ W+ Sbjct: 145 YRMDRGFLGMTSKTWQEDPPNLHVIGNLPFNVSTPLIIKWL 185 >gi|221485301|gb|EEE23582.1| dimethyladenosine transferase, putative [Toxoplasma gondii GT1] Length = 494 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 13/224 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + +L KI +++ TV+EIG G GNLT LL + AR+V+ ++ D + Sbjct: 171 QKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALDVDAR 229 Query: 82 FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +K IS+ N L + DAL+ D F++ + ANLPY I + L ++ Sbjct: 230 MVNEVKKRAISNGFMN-LAVRHGDALRSDL-GVFDVCA-----ANLPYQISSHFLLRLLA 282 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 PPF L+FQKE GER+ AQ +Y RL+ + + F P P Sbjct: 283 HR--PPF-RCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFTPPP 339 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 KV S V+ +P N I + + + FG++ +TL +R Sbjct: 340 KVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRR 383 >gi|123966249|ref|YP_001011330.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9515] gi|166221690|sp|A2BWR2|RSMA_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123200615|gb|ABM72223.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 276 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 135/263 (51%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL ++ +E D+ Sbjct: 9 KKRFGQHWLVNNLILEKIKEVAELDEKDFILEIGPGKGALTSKLLDSKISRLHAVELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139 +L + ++ + + Q D L + + +I+ I ++IAN+PYNI +L +I Sbjct: 69 LIDLLNN-KFRNDKKFSLQQGDILSTNLD---SINKKITKVIANIPYNITGPILDIFIGR 124 Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ + L QK+V +RI ++++S + G +SV + + D+ P F P Sbjct: 125 LGIVSKNNYKKIIFLMQKDVVDRILSKESSKNAGAMSVRMQLISNIKRICDVPPSSFNPP 184 Query: 199 PKVTSTVIHFIPHLNP---IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250 PKV S+++ F P L P + LE + K+ Q +F RRK +R +L + E+ L Sbjct: 185 PKVFSSLVVFEP-LRPEKRLDIKLERYIDKLLQISFNSRRKMIRNTLNSILSEDEIKKLA 243 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 + I N R +++SI + ++ Sbjct: 244 ELSEICFNSRPQDISINKWIKLA 266 >gi|327303040|ref|XP_003236212.1| dimethyladenosine transferase dimethyltransferase [Trichophyton rubrum CBS 118892] gi|326461554|gb|EGD87007.1| dimethyladenosine transferase dimethyltransferase [Trichophyton rubrum CBS 118892] Length = 377 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 12/219 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 39 IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P RLE++ D +K + +F++ I+N PY I + L F ++ + Sbjct: 98 ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDVC-----ISNTPYQISSPLTFKLLATNP 151 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ +P + + + + AF ++ KTLR S Sbjct: 209 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247 >gi|237835739|ref|XP_002367167.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49] gi|211964831|gb|EEB00027.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49] gi|221506158|gb|EEE31793.1| dimethyladenosine transferase, putative [Toxoplasma gondii VEG] Length = 494 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 13/224 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + +L KI +++ TV+EIG G GNLT LL + AR+V+ ++ D + Sbjct: 171 QKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALDVDAR 229 Query: 82 FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +K IS+ N L + DAL+ D F++ + ANLPY I + L ++ Sbjct: 230 MVNEVKKRAISNGFMN-LAVRHGDALRSDL-GVFDVCA-----ANLPYQISSHFLLRLLA 282 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 PPF L+FQKE GER+ AQ +Y RL+ + + F P P Sbjct: 283 HR--PPF-RCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFTPPP 339 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 KV S V+ +P N I + + + FG++ +TL +R Sbjct: 340 KVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRR 383 >gi|319777610|ref|YP_004137261.1| dimethyladenosine transferase [Mycoplasma fermentans M64] gi|238810000|dbj|BAH69790.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318038685|gb|ADV34884.1| Dimethyladenosine transferase [Mycoplasma fermentans M64] Length = 258 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQNFL D N++ KI E G ++EIG G G LT+ +L A++ E Sbjct: 6 KLKAKKRYGQNFLKDQNVINKIIELIKP-QGEKILEIGPGRGALTK-ILNQQAKEFTAFE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 DQ L+ + N+ +I+Q D L D +K+ ++ N+PY I + ++F Sbjct: 64 IDQDMVDYLQ--KNNILNQNQIVQGDFLIADLKKY----KSYVVVGNIPYYITSDIIFKL 117 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + ++ L+ Q EV +R+ A+ N Y +LS+ + + F P Sbjct: 118 LD---YRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTYFDP 174 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 PKV S ++ I N E+LK + F RRK L +L Sbjct: 175 VPKVDSAIVS-ITFKNEANDNYENLKDFFKLCFLARRKKLSFAL 217 >gi|317505059|ref|ZP_07963006.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] gi|315663837|gb|EFV03557.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] Length = 209 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 9/186 (4%) Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 R II +D L++D K F+ P + N PY+I +++ F + P T + Q Sbjct: 22 RDNIIGEDFLRMDLCKVFS-HEPFVLTGNYPYDISSQIFFKMLDNKDLIP---CCTGMIQ 77 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNP 214 +EV R+ A S YG LSVL +F + VF P PKV S VI + +N Sbjct: 78 REVALRMAAGPGSKAYGILSVLVQAWYDVEYLFTVDESVFNPPPKVKSAVIRMMRNQVNE 137 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET----NLRAENLSIEDFC 270 + C K++ + F +RRK LR S+K++ + A T R E LS++ F Sbjct: 138 LGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEQPASAEFFTLEMMTKRPEQLSVQQFV 197 Query: 271 RITNIL 276 +TN++ Sbjct: 198 ELTNLV 203 >gi|326479389|gb|EGE03399.1| dimethyladenosine transferase dimethyltransferase [Trichophyton equinum CBS 127.97] Length = 378 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 12/219 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 39 IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P RLE++ D +K + +F++ I+N PY I + L F ++ + Sbjct: 98 ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDV-----CISNTPYQISSPLTFKLLATNP 151 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ +P + + + + AF ++ KTLR S Sbjct: 209 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247 >gi|326471294|gb|EGD95303.1| dimethyladenosine transferase dimethyltransferase [Trichophyton tonsurans CBS 112818] Length = 378 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 12/219 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 39 IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P RLE++ D +K + +F++ I+N PY I + L F ++ + Sbjct: 98 ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDV-----CISNTPYQISSPLTFKLLATNP 151 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ +P + + + + AF ++ KTLR S Sbjct: 209 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247 >gi|68304920|gb|AAY89931.1| predicted dimethyladenosine transferase NMA0902 [uncultured bacterium BAC13K9BAC] Length = 141 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 2/124 (1%) Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 + QKEV +RI ++ N YGRLSV+T +F+IS +VF P PKV S+ I +P Sbjct: 12 FMLQKEVVDRIISKPNIKVYGRLSVMTQAYFNTKKLFNISENVFTPKPKVKSSFIRLLPR 71 Query: 212 LNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 + E I + AF RRKT+RQSL + + I + LRAENL+++D+ Sbjct: 72 KSIFKNSNHEEVFYNIVKSAFEGRRKTIRQSLSKYLSHDDYDNVNISSTLRAENLTVDDY 131 Query: 270 CRIT 273 I+ Sbjct: 132 LLIS 135 >gi|307213901|gb|EFN89152.1| Dimethyladenosine transferase 1, mitochondrial [Harpegnathos saltator] Length = 294 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 22/184 (11%) Query: 72 KVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-I 119 +++++EKD++F P IL D + +++II DD ++ E F N P + Sbjct: 7 RIVLVEKDKRFEPTLDILADSFAMINRKVDIIFDDIMRAHIESLFPKEKKMNWNDKPPDL 66 Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 +I NLP+N+ T L+ W+ + W +TL FQKEV ER+ A ++S RL Sbjct: 67 FLIGNLPFNVSTPLIIQWLHSIAERRGAWAFGRTKMTLTFQKEVAERLVAPESSEQRCRL 126 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFG 231 SV+ T + F I HVF P P V V+ F P PC K KI + F Sbjct: 127 SVMAQAWTFPVLRFVIPGHVFVPQPDVDVGVVSFTPLTK--PCTQHDFKFFEKIVRHVFS 184 Query: 232 KRRK 235 R+K Sbjct: 185 FRQK 188 >gi|332671564|ref|YP_004454572.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484] gi|332340602|gb|AEE47185.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484] Length = 329 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 128/299 (42%), Gaps = 37/299 (12%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K +GQNF+LD ++KI + G V+E+G G G+LT LL Sbjct: 27 AGEIRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVAAGERVVEVGPGLGSLTLGLL 86 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----------------------PNRLEIIQDDA 104 GA V+ +E D +L + + H +RL ++ DA Sbjct: 87 EAGA-DVVAVEIDPVLARLLPETVASHVPGLVRVDGPPDGPVVLRDAGGRDRLTVVLRDA 145 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERIT 163 L+V+ P+ ++ANLPYN+ +L ++ D+ E ++ Q EV +R+ Sbjct: 146 LEVE---ELPGPPPVALVANLPYNVSVPVLLTFLERFDS----LERALVMVQAEVADRLA 198 Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESL 222 A S YG S W A + VF+P P V S ++ P+ E + Sbjct: 199 APPGSRTYGVPSAKAAWYAHARRTATVGRSVFWPVPNVDSALVRLDRREPPVTTATREQV 258 Query: 223 KKITQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + AF +RRK LR + E L AG++ R E L +E F RI L Sbjct: 259 FTVVDAAFAQRRKMLRPALATLAGSAAAAEAALVAAGVDPQARGERLDVEAFARIAEHL 317 >gi|221480961|gb|EEE19375.1| ribosomal RNA adenine dimethylase domain-containing protein, putative [Toxoplasma gondii GT1] Length = 914 Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 83/272 (30%), Positives = 132/272 (48%), Gaps = 23/272 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ +GQNFL D NI + IA S S G+ V+E+G G G +T+ LL R + +E Sbjct: 610 PKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAVET 668 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137 D + +L S+ L II D L+V + + + + NLP+ + ++LL Sbjct: 669 DPRAVSLL----SRRLPTLNIIHGDVLQVSWPDLAQERGTRLSVAGNLPFYLTSQLLCCL 724 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + D+W F + + Q E+ ER+TA+ Y RLSV+ ++ + VF+P Sbjct: 725 L--DSWR-FIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVFYP 781 Query: 198 SPKVTSTVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV + ++H P+ L + + AFG+RRK LR SLK + L H Sbjct: 782 VPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKPV----LPHS 837 Query: 253 AGIE---TNLRAENLSIEDFCRITNILTDNQD 281 + +LR + LS DF +T + ++D Sbjct: 838 GAVPERFASLRPQQLSPTDFLELTEAIFPSKD 869 >gi|167470555|ref|ZP_02335259.1| dimethyladenosine transferase [Yersinia pestis FV-1] Length = 160 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 88/177 (49%), Gaps = 24/177 (13%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 + + AR + VIE D+ L + HP ++L I Q DA+KV+F + Sbjct: 53 E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFSELSEQAG 105 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGR Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVRRLVAGPNSKTYGR 159 >gi|71013449|ref|XP_758591.1| hypothetical protein UM02444.1 [Ustilago maydis 521] gi|46098249|gb|EAK83482.1| hypothetical protein UM02444.1 [Ustilago maydis 521] Length = 334 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 14/219 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + + + I + + V+E+G G GNLT +L A+K V+E D + Sbjct: 56 GQHILKNPLVAQGIVDKANLKPTDMVLEVGPGTGNLTVRILE-KAKKTTVVEMDPRMAAE 114 Query: 86 LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L P +L+I+ D K D +F++ I+N PY I + L+F +S Sbjct: 115 LSKRVQGKPEQRKLDIMLGDFCKTDLP-YFDVC-----ISNTPYQISSPLVFKLLSHR-- 166 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ+E R+ A+ + RLS +K + +S + F P P+V S Sbjct: 167 -PLFRCAILMFQREFALRLIARPGDNLWCRLSANVQLYSKVDHIMKVSRNSFRPPPQVES 225 Query: 204 TVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 +V+ P LNP P E +T+ F +R KT+R S Sbjct: 226 SVVRITP-LNPPPAIPFEEFDGLTRIVFSRRNKTVRASF 263 >gi|300707711|ref|XP_002996053.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01] gi|239605315|gb|EEQ82382.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01] Length = 278 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 17/219 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+ L ++ + I E + ++EIG G GNLT ++ +K+I E D + Sbjct: 8 KDLGQHILKNMGAIDTILEKAKIKPTDVILEIGGGTGNLTLKMIP-KCKKLICYEMDPRL 66 Query: 83 FP-ILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 ++K I++ ++ N+ ++ DA+K DF +F++ I+NLPY I + +F ++ Sbjct: 67 ASELVKKINANREYANKFQLFIGDAMKHDFP-YFDMC-----ISNLPYQISSPFIFKLLT 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + ++ ++FQKE +R+ A+ S Y RLSV + + I + F P P Sbjct: 121 YN-----FKCAYIMFQKEFADRLIARPGSQDYCRLSVSVQLLAQVDHILKIKKNSFVPPP 175 Query: 200 KVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237 KV S V+ P + P P E + + F ++ KTL Sbjct: 176 KVESAVVRIEPKI-PKPVINFEDFDALLKICFLRKNKTL 213 >gi|325177054|emb|CCA21009.1| dimethyladenosine transferase putative [Albugo laibachii Nc14] Length = 323 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 36/249 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSG--SL-----------DGITVIEIGAGPGNLTQMLLTL 68 K+++GQ+ L+ +++ I +++ SL I V+EIG+G GNLT LL + Sbjct: 17 KRHLGQHLLVSNDVIASIIKAADFPSLLLQKAGNQTEERRIRVLEIGSGTGNLTAALLDV 76 Query: 69 GAR-KVIVIEKDQQFFPILKDI------SSQ---HPNRLEIIQDDALKVDFEKFFNISSP 118 +V +E D L+D +SQ H NR+E K+ F+ S Sbjct: 77 DPTIQVHGVECDASMVKSLEDRFPSQLRTSQLQLHVNRIE-------KLRLSDLFSSSQG 129 Query: 119 I--RIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 + ++AN+PY + + ++ +S +P + + LL Q+E +R+ A ++ +YGRL+ Sbjct: 130 LIDAVVANIPYQLSSLIIARLVSYLHKYPGSVKCIILLLQEEFAQRMLATPHNQNYGRLA 189 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGK 232 V T + + P VF P P+V S VI PH P L + + F + Sbjct: 190 VNTSLVGHVDALLKVGPEVFIPRPQVDSRVIKVTPHFPRFIRDPSFLREFDALLRICFLR 249 Query: 233 RRKTLRQSL 241 + KTLR L Sbjct: 250 KNKTLRALL 258 >gi|261194984|ref|XP_002623896.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081] gi|239587768|gb|EEQ70411.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081] Length = 330 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 22/226 (9%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107 TV+EIG G GNLT +L A+KVI +E D + + P RLE++ D +K Sbjct: 10 TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F++ I+N PY I + L F ++ + P L+FQ+E R+ A+ Sbjct: 69 DLP-YFDVC-----ISNTPYQISSPLTFKLLAINPAP---RVCILMFQREFAMRLFAKPG 119 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKIT 226 Y RLSV + + + + F P P V S+V+ +P NP P + + Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLL 178 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268 + AF ++ KT+R S LG ++L +E+N R N+ +ED Sbjct: 179 RVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRTWCAQNNIPVED 220 >gi|308190242|ref|YP_003923173.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma fermentans JER] gi|307624984|gb|ADN69289.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma fermentans JER] Length = 258 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQNFL D N++ KI E G ++EIG G G LT+ +L A++ E Sbjct: 6 KLKAKKRYGQNFLKDQNVISKIIELIKP-QGEKILEIGPGRGALTK-ILNQQAKEFTAFE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + N+ +I+Q D L D EK+ ++ N+PY I + ++F Sbjct: 64 IDRDMVDYLQ--KNNILNQNQIVQGDFLIADLEKY----KDYVVVGNIPYYITSDIIFKL 117 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + ++ L+ Q EV +R+ A+ N Y +LS+ + + F P Sbjct: 118 LD---YRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTYFDP 174 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 PKV S ++ I N E+LK + F RRK L +L Sbjct: 175 VPKVDSAIVS-ITFKNEENDNYENLKDFFKLCFLARRKKLSFAL 217 >gi|296271693|ref|YP_003654324.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299] gi|296095868|gb|ADG91818.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299] Length = 270 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 22/265 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK GQNFL D +L I +S + + ++EIG G G+LT+ L+ + V E Sbjct: 3 KIKAKKKYGQNFLKDDTVLSMIIQSMPNNNN-HIVEIGPGLGDLTKNLVK--CKDVTAYE 59 Query: 78 KDQQFFPILKD-----ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 D F ILK I S L +I D L+ ++ +S +IANLPY I T Sbjct: 60 VDTDLFAILKTKFAIPIDS---GSLTLIHADVLESWTKQKSLHNSKYDLIANLPYYIATN 116 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT-KATMMFDIS 191 ++ + E + ++ QKEV E+ +A + + L V++ + ++ ++FD+ Sbjct: 117 IILRAFEDEAC----EHIIVMVQKEVAEKFSANEGDKEFSALGVISKLCSIESKILFDVP 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---- 247 P F P PKVTS++++ ++ ++ + F + RK L +++ + + Sbjct: 173 PESFDPPPKVTSSILYIKKDMS--KTMDKNFNSFLKACFQQPRKKLSKNVSSIVPKETIS 230 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 +L + I N+R LS + +I Sbjct: 231 SLFEELEISDNIRPHELSASLYSQI 255 >gi|148699068|gb|EDL31015.1| RIKEN cDNA D530005L17 [Mus musculus] Length = 1620 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 19/234 (8%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVD 108 V+E+G G GN+T LL A+KV+ E D + L P ++L+++ D LK D Sbjct: 163 VLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKSD 221 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 FF+ +ANLPY I + +F + PF+ L+FQ+E R+ A+ Sbjct: 222 L-PFFDAC-----VANLPYQISSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGD 272 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228 Y RLS+ T + + + F PKV S+V+ P P P + + + Sbjct: 273 KLYCRLSINTQLLAHVDHLMKVGKNNFRLPPKVESSVVRIEPKNPPPPINFQEWDDLVRI 332 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILT 277 F ++ KTL + K + LL + ++ + +E+ SI D +I +ILT Sbjct: 333 TFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVISEDFSIAD--KIQHILT 384 >gi|154151411|ref|YP_001405029.1| dimethyladenosine transferase [Candidatus Methanoregula boonei 6A8] gi|153999963|gb|ABS56386.1| dimethyladenosine transferase [Methanoregula boonei 6A8] Length = 254 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 32/265 (12%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D N +++IA + V+EIG G G LT+ LL GA V +E D+ L Sbjct: 7 QHFLIDKNAIERIA-GCADVKEKEVLEIGPGNGALTRALLDRGA-IVHAVELDRILCDEL 64 Query: 87 KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 D L + DA K F + ++NLPY+ +++ F + Sbjct: 65 ADRFFEEIQKGTLTVTHGDATKCPLPPFEMV------VSNLPYSASSKITFRLLDLG--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + L++Q+E ER+ A + GRLS++ F + P F P P+V S Sbjct: 116 --FSVAVLMYQQEFAERMAAPAGTKDCGRLSIMVQTYATVQRCFTLPPACFSPKPQVHSM 173 Query: 205 VIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA-------- 253 V+ +P P + K+ + + F RRKT+R L+ G +L Sbjct: 174 VVKIVPR--PPIFGVNDRKRYADVVRALFTHRRKTVRNGLR--GSSGILAPEWTKRVIDA 229 Query: 254 --GIETNLRAENLSIEDFCRITNIL 276 G R E L +EDF I N + Sbjct: 230 LPGEILQSRPEELYLEDFATIANFV 254 >gi|152993938|ref|YP_001359659.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1] gi|151425799|dbj|BAF73302.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1] Length = 284 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 23/268 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQNFL L++I ++ + DG+ V EIG G G+LT+ L+ AR V E D++ Sbjct: 12 KKFGQNFLKSDYYLQQIIQAMPN-DGLRVAEIGPGLGDLTKELVK--ARNVTAFEVDKRL 68 Query: 83 FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLLFNW 137 L + H E+ D L E++ + + P ++ANLPY I T ++ Sbjct: 69 CEHLTSEFEEPIHNGSFELRCGDVL----ERWASGSLLDEPYHLVANLPYYIATNIILKA 124 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + S+ ++ QKEV + A+ + LSVL KAT+ F++ F P Sbjct: 125 LKDE----HCRSVLVMVQKEVAVKFAAEAGEKAFSALSVLASTVGKATLCFEVEREAFVP 180 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256 P VTS V+ + + E+ KI AF + RK L ++L ++L+ + E Sbjct: 181 PPNVTSAVLLIEKNRSFDDEKFEAFLKI---AFSQPRKKLSKNLMTAFPKDLVKKTFAEL 237 Query: 257 ---TNLRAENLSIEDFCRITNILTDNQD 281 + +R + + N L DN D Sbjct: 238 ELPSTMRPHEAGTSIYHHLYNELKDNLD 265 >gi|296241774|ref|YP_003649261.1| ribosomal RNA adenine methylase transferase [Thermosphaera aggregans DSM 11486] gi|296094358|gb|ADG90309.1| ribosomal RNA adenine methylase transferase [Thermosphaera aggregans DSM 11486] Length = 249 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 30/227 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P K + QNF+++ ++ I + + D IEIG G G LT L+ R + IE Sbjct: 6 IRPSKKLSQNFVVNPRLITSILSLTSNED---TIEIGCGIGTLTIFLVN-RVRSLACIEY 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ I+ +I + P R ++ DAL + P ++++NLPY+I + +L I Sbjct: 62 DERMIKIVSNIV-RSP-RFIPVKGDALTT------GVGRP-QVVSNLPYHITSDILI-MI 111 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS------P 192 + D L QKEVGER+ A+ + YGRL+V+ A ++F+I P Sbjct: 112 ARDNS---ISKAVLTLQKEVGERLVAKAGTESYGRLTVI------AQLLFNIRITGVYPP 162 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 F P PKV S+++ + + +E ++ +T+ F +RR+ R+ Sbjct: 163 SSFIPRPKVESSLV-LLERIRDYDKVVEKVEHVTRALFSQRRRNARR 208 >gi|33861490|ref|NP_893051.1| dimethyladenosine transferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|62900569|sp|Q7V1E1|RSMA_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33634067|emb|CAE19392.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 277 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 24/267 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL ++ IE D+ Sbjct: 9 KKRFGQHWLVNNLILEKIKEVAELEEKDFILEIGPGRGALTSKLLDSKISRLHAIELDED 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLL------ 134 +L + N + Q D L + + +I+ I ++IAN+PYNI +L Sbjct: 69 LIDLLNNKFRNDKN-FSLQQGDILSTNLD---SINKKITKVIANIPYNITGPILDIFVGR 124 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 IS + + + L QK+V +RI A+ + + G +SV + + D+ P Sbjct: 125 LGIISKNNY----NKIIFLMQKDVVDRILAKDGNTNAGAMSVRMQLISNIRRICDVPPSS 180 Query: 195 FFPSPKVTSTVIHFIPHLNP---IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG---- 246 F P PKV ST++ F P L P + LE L K+ + +F RRK +R +L + Sbjct: 181 FDPPPKVFSTLVVFEP-LRPEMRLDIKLEKYLDKLLRISFNSRRKMIRNTLNSILSAEEI 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRIT 273 E L + I N R +++SI + ++ Sbjct: 240 EKLSESSQICFNSRPQDISINKWIKLA 266 >gi|187251110|ref|YP_001875592.1| dimethyladenosine transferase [Elusimicrobium minutum Pei191] gi|186971270|gb|ACC98255.1| Dimethyladenosine transferase [Elusimicrobium minutum Pei191] Length = 261 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 22/259 (8%) Query: 22 KKYMGQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +KY GQ+FL++ ++ KI ++ +IEIG G G LT LL G + + +IE Sbjct: 2 QKY-GQHFLVNEGVIDKIVNAVVDARARHPKARIIEIGPGKGALTLRLLDKGIKDLKLIE 60 Query: 78 KDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PI+ D + P+ +EIIQ D L D + + ++NLPY +L Sbjct: 61 ID----PIMVDHLRGVLPSGVEIIQSDFLDTDLSLLS--ENGVIFVSNLPYINAAEILNK 114 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + S +FQ+E +RI A + Y +S+ + + +SP F Sbjct: 115 VLNYKNFL----SAVFMFQREQAQRIKAGEGDTFYSPISLTSQIAADIKSLCRVSPGSFN 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN------LL 250 P PKV S V+ F ++ L Q AF +RK + S+ ++ LL Sbjct: 171 PPPKVESEVLCFERNIKIQEDLLNGFTLAVQAAFAYKRKNVLNSISEYFKKDKKEIFSLL 230 Query: 251 HQAGIETNLRAENLSIEDF 269 + I N RA+NL+ D+ Sbjct: 231 ESSKISPNCRAQNLTQTDY 249 >gi|258574477|ref|XP_002541420.1| dimethyladenosine transferase [Uncinocarpus reesii 1704] gi|237901686|gb|EEP76087.1| dimethyladenosine transferase [Uncinocarpus reesii 1704] Length = 349 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 16/236 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L A+KV+ +E D + Sbjct: 38 IGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVVAVELDPRMAA 96 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RLE++ D +K D +F++ I+N PY I + L F ++ Sbjct: 97 EVTKRVQGTPEQKRLEVLLGDVIKTDLP-YFDV-----CISNTPYQISSPLTFKLLATTP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 207 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S+V+ +P + + + + AF ++ KTLR S LG ++L+ +E+N Sbjct: 208 SSVVRIVPKVPRPDISYDEWDGLLRVAFVRKNKTLRSSF--LGTSSVLNM--LESN 259 >gi|237844915|ref|XP_002371755.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49] gi|211969419|gb|EEB04615.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49] Length = 908 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 23/272 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ +GQNFL D NI + IA S S G+ V+E+G G G +T+ LL R + +E Sbjct: 604 PKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAVET 662 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137 D + +L S+ L II D L+V + + + + NLP+ + ++LL Sbjct: 663 DPRAVSLL----SRRLPTLNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLTSQLLCCL 718 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + D+W F + + Q E+ ER+TA+ Y RLSV+ ++ + VF+P Sbjct: 719 L--DSWR-FIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVFYP 775 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-----KKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV + ++H P+ L + + + AFG+RRK LR SLK + L H Sbjct: 776 VPKVDAALVHIKFRQEPLEKILRGVDPRQFRNVLHAAFGQRRKMLRSSLKPV----LPHG 831 Query: 253 AGIE---TNLRAENLSIEDFCRITNILTDNQD 281 + +LR + LS DF +T + ++D Sbjct: 832 GAVPERFASLRPQQLSPTDFLELTEAIFPSKD 863 >gi|21228641|ref|NP_634563.1| dimethyladenosine transferase [Methanosarcina mazei Go1] gi|20907141|gb|AAM32235.1| Dimethyladenosine transferase [Methanosarcina mazei Go1] Length = 209 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 25/217 (11%) Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +I +E D +L D N +EII DALKVDF +F ++++NLPY+I + Sbjct: 1 MIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSISSE 53 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + F + ++ L++Q E R+ + Y RL++ T + A+++ + Sbjct: 54 ITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMKVPK 108 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+P+V S VI IP P E+ + F +RRK LR ++ L +LL Sbjct: 109 GAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSSLLK 166 Query: 252 QAGIE----------TNLRAENLSIEDFCRITNILTD 278 I+ N RAE+L+ E+ + N++ D Sbjct: 167 IPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 203 >gi|46121341|ref|XP_385225.1| hypothetical protein FG05049.1 [Gibberella zeae PH-1] Length = 346 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 17/263 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I I + TV+EIG G G LT +L A+ V +E D + Sbjct: 32 IGQHILKNPGIADTIVAKAYLKPTDTVLEIGPGTGVLTTRILE-QAKAVKAVELDTRMAA 90 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141 L P +LEII D K+D + PI + I+N PY I + ++ IS Sbjct: 91 ELTKRVQGGPLQQKLEIIMGDFAKLDVVQAL---PPIDVCISNTPYQISSIIVSKLISMP 147 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P L+ Q+E G R+ A+ Y RLSV T + +K +M+ + + F P P+V Sbjct: 148 KPPRVS---ILMVQREFGLRLCARAGDSLYSRLSVNTQFTSKVSMVAKVGKNNFSPPPEV 204 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TNLR 260 S V+ P + LE L + + F ++ KTLR S L + + I T++ Sbjct: 205 ESVVVRIEPRTDVPAVGLEELDGVLRICFSRKNKTLRASF--LDSHEICERNWITWTSMY 262 Query: 261 AENLSIEDFCRITNILTDNQDIA 283 + +S +D ++L D+ D A Sbjct: 263 PDKVSEKDL----DLLRDSMDTA 281 >gi|229083358|ref|ZP_04215712.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44] gi|228699951|gb|EEL52582.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44] Length = 185 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 14/183 (7%) Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 F + F + ++ANLPY + T +LF + + P ++ QKEVG+R+ A+ + Sbjct: 5 FGEQFEEGQDVMVVANLPYYVTTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGT 61 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKIT 226 YG LS+ + T+ + + VF P P V S VI + PI + ++ Sbjct: 62 KDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRILKRPQPIVEVTDEKFFFEVV 121 Query: 227 QEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + +F +RRKTL +L E +L + GI+ R E LSIE+F ++N L Sbjct: 122 RASFAQRRKTLMNNLSNNLNGFPKDKELLERILTEVGIDPKRRGETLSIEEFAVLSNALV 181 Query: 278 DNQ 280 ++ Sbjct: 182 SHK 184 >gi|19112914|ref|NP_596122.1| 18S rRNA dimethylase [Schizosaccharomyces pombe 972h-] gi|26556992|sp|Q9USU2|DIM1_SCHPO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|6048291|emb|CAB58154.1| 18S rRNA dimethylase [Schizosaccharomyces pombe] Length = 307 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 12/222 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + + + I + + TV+E+G G GNLT +L ARKVI +E D + Sbjct: 26 KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEMDPRM 84 Query: 83 FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P +L+++ D +K D +F++ ++N PY I + L+F + Sbjct: 85 AAEITKRVQGTPKEKKLQVVLGDVIKTDLP-YFDVC-----VSNTPYQISSPLVFKLLQQ 138 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L+FQ+E R+ A+ P Y RLS + + + F P P Sbjct: 139 RPAP---RAAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPL 195 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S+V+ P P P E + + F ++ KT+ K Sbjct: 196 VESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFK 237 >gi|258545947|ref|ZP_05706181.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] gi|258518825|gb|EEV87684.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] Length = 136 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEV +RITA S YGRLS++ + T +FDI P F P PKV S V+ +P Sbjct: 4 MLQKEVVDRITAAPGSKTYGRLSLMAQLWCETTALFDIPPDAFDPPPKVDSAVVRLVPR- 62 Query: 213 NPIPCC----LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIED 268 P P L + ++ + AF +RRK LR++ L I+ RAE L Sbjct: 63 -PAPAWQIDDLATFEETVRLAFAQRRKMLRKTFAHWMNAAALEALDIDPTARAETLDGAA 121 Query: 269 FCRITN 274 F R+ N Sbjct: 122 FARLAN 127 >gi|303312255|ref|XP_003066139.1| dimethyladenosine transferase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105801|gb|EER23994.1| dimethyladenosine transferase, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040136|gb|EFW22070.1| dimethyladenosine transferase [Coccidioides posadasii str. Silveira] Length = 379 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L A+KVI +E D + Sbjct: 38 IGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RLE++ D +K D +F++ I+N PY I + L F ++ Sbjct: 97 EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDV-----CISNTPYQISSPLTFKLLATTP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 207 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 S+V+ +P + + + AF ++ KTLR S LG ++L Sbjct: 208 SSVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVL 253 >gi|119193222|ref|XP_001247217.1| hypothetical protein CIMG_00988 [Coccidioides immitis RS] Length = 346 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L A+KVI +E D + Sbjct: 5 IGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 63 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RLE++ D +K D +F++ I+N PY I + L F ++ Sbjct: 64 EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDVC-----ISNTPYQISSPLTFKLLATTP 117 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 118 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 174 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 S+V+ +P + + + AF ++ KTLR S LG ++L Sbjct: 175 SSVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVL 220 >gi|325123521|gb|ADY83044.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter calcoaceticus PHEA-2] Length = 160 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E D+ Sbjct: 17 RKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ + Sbjct: 76 LAAGLPE-RVPHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134 Query: 142 TWPPFWESLTLLFQKEVGERITAQKN 167 + + + + QK + RI QKN Sbjct: 135 SK---VKDMHFMLQKVLLNRI--QKN 155 >gi|56807419|ref|ZP_00365386.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Streptococcus pyogenes M49 591] Length = 136 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 6/128 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L A Sbjct: 10 KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126 +V+ E D + PIL D N ++++ D LK D ++F N PI+++ANLP Sbjct: 69 AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIQQFKNPDLPIKVVANLP 127 Query: 127 YNIGTRLL 134 Y I T +L Sbjct: 128 YYITTPIL 135 >gi|217073100|gb|ACJ84909.1| unknown [Medicago truncatula] Length = 225 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 11/180 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-QQ 81 K GQ+ L + ++ I + SG V+EIG G GNLT+ LL G +KVI +E D + Sbjct: 28 KSKGQHILKNPLLVDTIVQKSGIKTTDVVLEIGPGTGNLTKKLLEAG-KKVIAVEIDPRM 86 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + K +RL +IQ D LK + +F+I +AN+PY I + L F + Sbjct: 87 VLELNKRFQGTPSSRLTVIQGDVLKTELP-YFDIC-----VANIPYQISSPLTFKLLKHQ 140 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + ++FQ+E R+ AQ Y RL+V T + + + + + F P PK+ Sbjct: 141 ---PAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARISHLLKVGRNNFTPPPKL 197 >gi|67525711|ref|XP_660917.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4] gi|40744101|gb|EAA63281.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4] gi|259485718|tpe|CBF82976.1| TPA: dimethyladenosine transferase (AFU_orthologue; AFUA_7G04860) [Aspergillus nidulans FGSC A4] Length = 403 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 11/217 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I I + + TV+E+G GPG LT +L A+KV+ +E D + Sbjct: 43 LGQHILKNGAIADNIVDKANVQPSQTVLEVGPGPGILTTRILE-KAKKVVAVEFDPRMAA 101 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141 L P +L+I+ D +K D K P ++ I+N PY I + L+F +S Sbjct: 102 ELTKRVQATPMEKKLQIVLGDFIKTDLSKL----PPFQVCISNTPYQISSPLIFKLLSMP 157 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+ Q+E R+ A+ Y RLSV + +K + + + + F P P+V Sbjct: 158 NPP---KMCVLMVQREFALRLLARPGDALYSRLSVNVQFFSKVSHIMKVGRNNFRPPPQV 214 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 S+V+ P L + + + F ++ KTLR Sbjct: 215 ESSVVRIEPKLGKPEISWDEWDGMLRICFVRKNKTLR 251 >gi|307069663|ref|YP_003878140.1| putative dimethyladenosine transferase [Candidatus Zinderia insecticola CARI] gi|306482923|gb|ADM89794.1| putative dimethyladenosine transferase [Candidatus Zinderia insecticola CARI] Length = 254 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 16/163 (9%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G GNLT+ L+ + IE D++ + K++ ++ N++ + + LK + + Sbjct: 34 ILEIGFGNGNLTKYLIKYKIF-LFAIEIDKKLY---KNLKIKYKNKINLFNYNILKFNIK 89 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKN 167 F + RII NLPYNI +++ +I F++++ ++ QKE ++I A Sbjct: 90 IF---NKKFRIIGNLPYNISKKIILYFIK------FYKNIKDIYVMLQKEFVKKINANYG 140 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 + + ++S+LT + ++ +IS F+P PKV S I IP Sbjct: 141 NKKFSKISILTQIKFNIIILLNISKKNFYPIPKVNSYFIKMIP 183 >gi|156055498|ref|XP_001593673.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980] gi|154702885|gb|EDO02624.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980 UF-70] Length = 383 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 25/264 (9%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 32 KDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILE-SAKKVIAVEVDPRM 90 Query: 83 FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P RLE++ D +K + F++ I+N PY I + L+F +S Sbjct: 91 AAEVTKRVQGKPEQKRLEVLLGDVIKTEL-PHFDV-----CISNTPYQISSPLVFKLLSL 144 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P L+FQ+E R+TA+ Y RLSV + K T + + + F P P+ Sbjct: 145 PNPP---RCSVLMFQREFALRLTARPGDSLYCRLSVNAQFFAKITHIMKVGKNNFRPPPQ 201 Query: 201 VTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S+V+ P E + + F ++ +T+R S LG + +L A E N Sbjct: 202 VESSVVRIEPKTGKERPGVSWEEWDGMLRICFVRKNRTMRASW--LGMKQVL--AMCERN 257 Query: 259 LRAENLSIEDFCRITNILTDNQDI 282 R +C NI D + Sbjct: 258 YRV-------YCSTNNIALDETPV 274 >gi|121711417|ref|XP_001273324.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1] gi|119401475|gb|EAW11898.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1] Length = 393 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 11/217 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I I + + TV+E+G GPG LT +L A+KV+ +E D + Sbjct: 40 IGQHILKNPTIADAIVDKANIQPSQTVLEVGPGPGILTTRILQ-KAKKVVAVELDPRMAA 98 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141 L P +L+I+ D +K D K P +I I+N PY I + L+F +S Sbjct: 99 ELTKTVQATPAEKKLQIVLGDFVKTDLSKL----PPFQICISNTPYQISSPLIFKLLSMP 154 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+ Q+E R+ A+ Y RLSV + ++ + + + + F P P+V Sbjct: 155 NPP---KTCVLMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFRPPPQV 211 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 S+V+ P + + + + F ++ KTLR Sbjct: 212 ESSVVRVEPKADRPDISWDEWDGMLRICFVRKNKTLR 248 >gi|169765912|ref|XP_001817427.1| dimethyladenosine transferase [Aspergillus oryzae RIB40] gi|238482523|ref|XP_002372500.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357] gi|83765282|dbj|BAE55425.1| unnamed protein product [Aspergillus oryzae] gi|220700550|gb|EED56888.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357] Length = 392 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 11/217 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I I + + G TV+E+G GPG LT +L A+KV+ +E D + Sbjct: 39 LGQHILKNGAIADAIVDKANIQQGQTVLEVGPGPGVLTNRILA-KAKKVVAVEVDPRMAA 97 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141 L P +L+I+ D +K D + P +I I+N PY I + L+F +S Sbjct: 98 ELTKNVQGTPAEKKLQIVLGDFVKTDLSQL----PPFQICISNTPYQISSPLIFKLLSMP 153 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+ Q+E R+ A+ Y RLSV + ++ + + + F P P+V Sbjct: 154 NPP---KMCVLMVQREFALRLVARPGDSLYSRLSVNVQFFSRVQHIMKVGRNNFRPPPQV 210 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 S+V+ P + + + + F ++ KTLR Sbjct: 211 ESSVVRVEPKSDRPAISWDEWDGMLRICFVRKNKTLR 247 >gi|229170892|ref|ZP_04298495.1| Dimethyladenosine transferase [Bacillus cereus MM3] gi|228612558|gb|EEK69777.1| Dimethyladenosine transferase [Bacillus cereus MM3] Length = 183 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 14/179 (7%) Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 F + F + ++ANLPY I T +LF + + P ++ QKEVG+R+ A+ + Sbjct: 2 FSEQFEEGQDVMVVANLPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGT 58 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKIT 226 YG LS+ + T+ + + VF P P V S +I + P+ + ++ Sbjct: 59 KEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVV 118 Query: 227 QEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +F +RRKTL +L + +L + GI+ R E LSIE+F ++N L Sbjct: 119 RASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 177 >gi|221501682|gb|EEE27446.1| riboxomal RNA adenine dimethylase domain-containing protein, putative [Toxoplasma gondii VEG] Length = 912 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 28/277 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGAR-----KV 73 PK+ +GQNFL D NI + IA S S G+ V+E+G G G +T+ LL R + Sbjct: 603 PKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPRMSDFVDL 662 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTR 132 E D P +S P L II D L+V + + + + NLP+ + ++ Sbjct: 663 CSCETD----PRAVSLSRASPT-LNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLTSQ 717 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 LL + D+W F + + Q E+ ER+TA+ Y RLSV+ ++ + Sbjct: 718 LLCCLL--DSWR-FIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPR 774 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRLGGE 247 VF+P PKV + ++H P+ L + + AFG+RRK LR SLK + Sbjct: 775 SVFYPVPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKPV--- 831 Query: 248 NLLHQAGIE---TNLRAENLSIEDFCRITNILTDNQD 281 L H + +LR + LS DF +T + ++D Sbjct: 832 -LPHSGAVPERFASLRPQQLSPTDFLELTEAIFPSKD 867 >gi|317027289|ref|XP_001400595.2| dimethyladenosine transferase [Aspergillus niger CBS 513.88] Length = 387 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 18/249 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + ++I + + V+EIG G GNLT +L A+KVI +E D + Sbjct: 38 LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILE-QAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RL++I D +K D +F++ I+N PY I + L F ++ Sbjct: 97 EVTKRVQGTPAQKRLDVILGDVIKTDLP-YFDVC-----ISNTPYQISSPLTFKLLATSP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 151 APRI---CVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207 Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--QAGIETNL 259 S+V+ +P NP P + + + F ++ KT+R S LG ++ +A T Sbjct: 208 SSVVRLVPK-NPRPQINYDEWDGLLRILFVRKNKTIRSSF--LGKSTVMDMLEANYRTWC 264 Query: 260 RAENLSIED 268 ++ +ED Sbjct: 265 AQNDIPVED 273 >gi|322710252|gb|EFZ01827.1| dimethyladenosine transferase dimethyltransferase [Metarhizium anisopliae ARSEF 23] Length = 388 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 117/257 (45%), Gaps = 25/257 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQ+ L + + I E + TV+EIG G GNLT +L A+K I +E D + Sbjct: 43 GQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVELDPRMAAE 101 Query: 85 ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + K + R LE+I D +K + +F I+N PY I + L+F ++ Sbjct: 102 VTKRVQGTPEQRKLEVILGDVIKTELPQF------DVCISNTPYQISSPLVFKLLAMPNP 155 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ+E R+TA+ P Y R+SV + K T + + + F P P+V S Sbjct: 156 P---RTSVLMFQREFALRLTARPGEPLYSRISVNAQFWAKITHIMKVGKNNFRPPPQVES 212 Query: 204 TVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 +V+ P + + + + + F ++ KTLR S LG +L +E N R Sbjct: 213 SVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLTM--VEKNYRT 268 Query: 262 ENLSIEDFCRITNILTD 278 +C + + D Sbjct: 269 -------WCAMNGVAVD 278 >gi|134057541|emb|CAK48895.1| unnamed protein product [Aspergillus niger] Length = 319 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 18/239 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + ++I + + V+EIG G GNLT +L A+KVI +E D + Sbjct: 38 LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILE-QAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RL++I D +K D +F++ I+N PY I + L F ++ Sbjct: 97 EVTKRVQGTPAQKRLDVILGDVIKTDLP-YFDVC-----ISNTPYQISSPLTFKLLATSP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 151 AP---RICVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207 Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S+V+ +P NP P + + + F ++ KT+R S LG ++ +E N R Sbjct: 208 SSVVRLVPK-NPRPQINYDEWDGLLRILFVRKNKTIRSSF--LGKSTVMDM--LEANYR 261 >gi|321311060|ref|YP_004193389.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str. Langford 1] gi|319802904|emb|CBY93550.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str. Langford 1] Length = 263 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 14/255 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ FL + I ++IAE LD ++E+G G G +TQ + +RK ++E D Sbjct: 5 KKRWGQVFLKNKRIQERIAEYINLLDAKNLLEVGPGEGAITQYI-NYESRKFSLVEIDSY 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L++ ++P+ + II D L +D E F+ + + N+PY I + +L + + Sbjct: 64 LVGLLRE---RYPD-INIIFGDFLNLDLENLFSEREGL-VFGNIPYYITSPILRKFSESK 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ + QKEV E IT+ +Y +V +F + F P PKV Sbjct: 119 SF----SQAVFMVQKEVFESITSPPKGKNYTSFAVFLQTINDIRKVFYVGKENFVPVPKV 174 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQAGIET 257 S VIH + I L +++F RK L + K+ E + + ++ Sbjct: 175 DSAVIHLVKKNTKILPYLNEYSLFLKKSFFMPRKKLVNNWKKFLSSEAIEEIFEEHNMDN 234 Query: 258 NLRAENLSIEDFCRI 272 ++R + +S + + +I Sbjct: 235 SVRPDEISSDLYEKI 249 >gi|322699660|gb|EFY91420.1| dimethyladenosine transferase dimethyltransferase [Metarhizium acridum CQMa 102] Length = 390 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 25/257 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQ+ L + + I E + TV+EIG G GNLT +L A+K I +E D + Sbjct: 43 GQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVELDPRMAAE 101 Query: 85 ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + K + R LE++ D +K + +F I+N PY I + L+F ++ Sbjct: 102 VTKRVQGTPEQRKLEVVLGDVIKTELPQF------DVCISNTPYQISSPLVFKLLAMPNP 155 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ+E R+TA+ P Y R+SV + K T + + + F P P+V S Sbjct: 156 P---RTSVLMFQREFALRLTARPGDPLYSRISVNAQFWAKITHIMKVGKNNFRPPPQVES 212 Query: 204 TVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 +V+ P + + + + + F ++ KTLR S LG +L +E N R Sbjct: 213 SVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLTM--VEKNYRT 268 Query: 262 ENLSIEDFCRITNILTD 278 +C + + D Sbjct: 269 -------WCAMNGVAVD 278 >gi|111225627|ref|YP_716421.1| dimethyladenosine transferase [Frankia alni ACN14a] gi|111153159|emb|CAJ64908.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) [Frankia alni ACN14a] Length = 274 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 18/231 (7%) Query: 50 TVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILK-----DISSQHPNRLEIIQDD 103 TV+EIG G G++T LL T GA V+ +E D L + ++ RL ++ D Sbjct: 15 TVLEIGPGLGSMTLGLLGTAGA--VVAVEVDPPLAAALPVTVAARLPAEAAARLHVVLAD 72 Query: 104 ALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 L++ + +P + ANLPYNI LL + + P L ++ Q EV +R+ Sbjct: 73 GLRLGPADLPAGVPAPDVLAANLPYNIAVPLLLGVL--ERLPSLRRGL-VMVQAEVADRL 129 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES- 221 TA S YG SV W ++ + VF+P P V S ++ F P P L + Sbjct: 130 TAPPGSRVYGAPSVKLAWYARSRPAGGVPRPVFWPQPNVDSGLVAFTRRTPPAPAELRAE 189 Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIE 267 + AF +RRKTLR +L G L AG++ R E L +E Sbjct: 190 VFAAVDAAFAQRRKTLRTALVPWAGSRDAATALAEAAGVDPGARGETLDVE 240 >gi|301101445|ref|XP_002899811.1| dimethyladenosine transferase, putative [Phytophthora infestans T30-4] gi|262102813|gb|EEY60865.1| dimethyladenosine transferase, putative [Phytophthora infestans T30-4] Length = 349 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 31/241 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVI 76 K+ +GQ+ L+ IL +I +S D + V+EIG G GNLT LL + + +V + Sbjct: 37 KRKLGQHLLVSDGILDQIVAASELSDICSDTVRVLEIGPGTGNLTSTLLQVSPKMQVHAV 96 Query: 77 EKDQQFFPILK-----DISS-----QHPN--RLEIIQDDALKVDFEKFFNISSPIRIIAN 124 E D + LK +I S +H + + D + + EK FN +AN Sbjct: 97 EFDPRMVEQLKLRFPTEIESGSLVLEHSDFEDFRFVPDQKQETNQEKIFNA-----CVAN 151 Query: 125 LPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +PY + + + L N++ +P ++ LL Q+E R+ A+ + Y RLS T Sbjct: 152 IPYQLSSIVVSRLSNYM--HRFPKTFKCAVLLVQEEFASRLLAEPGNKSYSRLSANTALV 209 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTL 237 T + + F P PKV S VI +P +P + + + F ++ KTL Sbjct: 210 ANVTSVAKVPREHFLPPPKVDSRVIKLVPRAAALPSHDEQFFQKFDALLRLCFERKNKTL 269 Query: 238 R 238 R Sbjct: 270 R 270 >gi|157413292|ref|YP_001484158.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9215] gi|166987696|sp|A8G4P1|RSMA_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157387867|gb|ABV50572.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 274 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 16/263 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ +E D Sbjct: 9 KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139 +L D + ++ + D L V+ + +I+ I ++IAN+PYNI +L +I Sbjct: 69 LINLLND-KFNNNDKFSLQHGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124 Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P Sbjct: 125 LGIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPP 184 Query: 199 PKVTSTVIHFIPHLNP---IPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLL 250 PKV S+++ F P +N + LE + K+ + +F RRK LR +L L E L Sbjct: 185 PKVFSSLVVFEP-INDNLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEMNELS 243 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 + + LR +++SI + ++ Sbjct: 244 ESSKVCFKLRPQDISINQWIKLA 266 >gi|48477458|ref|YP_023164.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790] gi|48430106|gb|AAT42971.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790] Length = 239 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 28/248 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +KY GQ FL +LNI K G V+EIG G G LT +++ + V+E D + Sbjct: 5 RKY-GQVFLKNLNIAKIEVNLLNLSPGERVLEIGPGHGILTSIIMEKNV-NLTVVEPDHR 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 F+ +I + P L I++ L + N + +II N+PYNI ++++F D Sbjct: 63 FY---NEIILRFPG-LNAIKNSFLDL------NPGAYDKIIGNIPYNISSQIIFKLYDFD 112 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L+ Q+E ER+ A + +Y RLS + R + D+S F+P P+V Sbjct: 113 -----FKLALLMVQREFAERLVASPGNKNYSRLSASSKLRFDIKKVMDVSRKNFYPVPEV 167 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S++I + IPC + + K+ AF +RK + K G + G Sbjct: 168 DSSIIIIKKNNKKIPCNPDDIIKM---AFSMKRKKISSIFKNYDGPLKYKRPG------- 217 Query: 262 ENLSIEDF 269 +LS EDF Sbjct: 218 -DLSPEDF 224 >gi|302543001|ref|ZP_07295343.1| dimethyladenosine transferase [Streptomyces hygroscopicus ATCC 53653] gi|302460619|gb|EFL23712.1| dimethyladenosine transferase [Streptomyces himastatinicus ATCC 53653] Length = 174 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +P ++ANLPYN+ +L N ++ P E ++ Q EV +R+ A S YG SV Sbjct: 10 APTALVANLPYNVAVPVLLNMLARF---PTIERTLVMVQSEVADRLAAPPGSKVYGVPSV 66 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRR 234 W I +VF+P+P V S ++ + P+ E + + AF +RR Sbjct: 67 KAAWYAHVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPLTTTASREEVFAVVDAAFAQRR 126 Query: 235 KTLRQSLK-----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 KTLR +L E L AGI R E+L++EDF I Sbjct: 127 KTLRAALSGWAGSAPAAEAALTAAGISPQARGESLTVEDFAAIAE 171 >gi|309792566|ref|ZP_07687028.1| dimethyladenosine transferase [Oscillochloris trichoides DG6] gi|308225380|gb|EFO79146.1| dimethyladenosine transferase [Oscillochloris trichoides DG6] Length = 285 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 28/286 (9%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ L + P + MGQNFL+D L I +++ V+E+G G G LT L+ Sbjct: 9 QRVRAALRTLDLRPTRGMGQNFLIDQLALDTIVQAAELTPDDLVVEVGPGLGVLTWELVR 68 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLP 126 + +V+ +E D++ L + + P L IIQ D L+ +++ P +++ANLP Sbjct: 69 VAR-QVVAVELDRRLAARLHEEFATAP--LRIIQADVLRTPPAAILDDLAPPYKLVANLP 125 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW---RTK 183 Y I +L +++ P + + +L Q EV ERI AQ G LSVL T+ Sbjct: 126 YAITAPVLRHFLEGQPPP---DVMVVLVQWEVAERICAQP-----GDLSVLAHAVQIYTQ 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTL---- 237 ++ + F P+P V S ++ P L + +L +I + F + RK L Sbjct: 178 PEIIARVPASSFHPAPAVDSAILRMRRRPQLAVAVDDVAALFRIIKAGFLQPRKQLGNAL 237 Query: 238 -------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SL R LH A I+ RAE L++ ++ I L Sbjct: 238 PGGLAAIGSSLPRDEVVAALHSANIDPKRRAETLTLHEWATIYQAL 283 >gi|169625150|ref|XP_001805979.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15] gi|111055562|gb|EAT76682.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15] Length = 378 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 117/280 (41%), Gaps = 23/280 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K S K +H K +GQ+ L + + I + + V+E+G G GNLT ++ Sbjct: 19 KPTSAKASAAHSIFKMDKDLGQHILKNPGVASAIVQKAFLKQSDHVLEVGPGTGNLTVLI 78 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+ V +E D + L P RL+++ D +K + F I+ Sbjct: 79 LK-AAKAVTAVEMDPRMAAELTKRVQGTPEAKRLKVMLGDVIKTELPHF------DVCIS 131 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N PY I + L+F +S + P S L+FQ+E R+ A+ Y RLSV K Sbjct: 132 NTPYQISSPLVFKLLSLPSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAK 188 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + + F P P V S V+ P E + + AF ++ +TLR S Sbjct: 189 VSHIMKVGRNNFNPPPLVESNVVRIEPKFPRPQIAYEEWDGLLRIAFVRKNRTLRAS--- 245 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L A + L A N + FC NI D+ + Sbjct: 246 -----FLGTAAV-VELLASNYRL--FCAQNNIELDDSPVG 277 >gi|4572637|emb|CAA92585.1| dimethylase [Schizosaccharomyces pombe] Length = 315 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 12/222 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + + + I + + TV+E+G G GNLT +L ARKVI +E D + Sbjct: 26 KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEMDPRM 84 Query: 83 FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P +L+++ D +K D +F++ ++N PY I + L+F + Sbjct: 85 AAEITKRVQGTPKEKKLQVVLGDVIKTDLP-YFDVC-----VSNTPYQISSPLVFKLLQQ 138 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P L+FQ+E R+ A+ P Y RL + + + F P P Sbjct: 139 RPAP---RGAILMFQREFALRLVARPGDPLYCRLPANVQMWAHVKHIMKVGKNNFRPPPL 195 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S+V+ P P P E + + F ++ KT+ K Sbjct: 196 VESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFK 237 >gi|305663450|ref|YP_003859738.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans DSM 17230] gi|304378019|gb|ADM27858.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans DSM 17230] Length = 288 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 30/241 (12%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI----TVIEIGAGPGNLTQMLLTLG 69 L Y I KK + Q LL+ L+KIA L I +VIEIG+GPG LT + Sbjct: 20 LRVYGIKLKKRLSQVILLNEKTLEKIARMLKELSIIHRFSSVIEIGSGPGTLTLYVAKEC 79 Query: 70 AR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +I IE D++F IL++I N ++II DA+++ N++ I NLPY+ Sbjct: 80 TNLYIIAIEIDKRFSAILREIQEYFWN-VDIIIGDAIQLIDVIRSNVA-----IGNLPYH 133 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + +L + + QK+VG +I ++ S YG++S+L ++F Sbjct: 134 ITSDILIEI------AKHIDIALITVQKDVGMKIISKPGSKSYGKISILL------QLLF 181 Query: 189 DIS-----PHVFF-PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 DI P FF P PKV S+++ + +E ++++T+ F RRK + ++LK Sbjct: 182 DIKYVGGIPSKFFRPKPKVDSSILLLVRK-RIYDKTIERIEEMTKCLFSYRRKHVYKALK 240 Query: 243 R 243 R Sbjct: 241 R 241 >gi|254525470|ref|ZP_05137522.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9202] gi|221536894|gb|EEE39347.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9202] Length = 274 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 134/262 (51%), Gaps = 14/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ +E D Sbjct: 9 KKRFGQHWLVNKIILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139 +L D + + + + D L V+ + +I+ I ++IAN+PYNI +L +I Sbjct: 69 LINLLNDKFNNNA-KFSLQHGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124 Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P Sbjct: 125 LGIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPP 184 Query: 199 PKVTSTVIHFIPHLN--PIPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLLH 251 PKV S+++ F P + + LE + K+ + +F RRK LR SL L E L Sbjct: 185 PKVFSSLVVFEPIKDNLRLDISLEKYIDKLLRISFNSRRKMLRNSLNSILSNEEINELSE 244 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 + + LR +++SI + ++ Sbjct: 245 SSKVCFKLRPQDISINQWIKLA 266 >gi|84996089|ref|XP_952766.1| rDNA dimethyladenosine transferase [Theileria annulata strain Ankara] gi|65303763|emb|CAI76140.1| rDNA dimethyladenosine transferase, putative [Theileria annulata] Length = 569 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 56/235 (23%) Query: 26 GQNFLLDLNILKKIAES-----SGSLDGITVIEIGAGPGNLTQMLL-------------- 66 G NF+ DLN++ K+ S S DG VIE+G G G+LT +L Sbjct: 138 GGNFITDLNLMYKMCNSLQHYSEDSGDGSQVIELGCGIGSLTHILYKKYKNMTGTVLDFY 197 Query: 67 ----------------------------TLGARKVIVIEKDQQFFPI----LKDISSQHP 94 TL ++ + + + I + +S P Sbjct: 198 NYIAIRPKGTSNYTAIHFKYLVSSLSRSTLCNHRISSLSRSTKRIEIDSRAVSQLSRTLP 257 Query: 95 NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 N L II D L++D+++ N I + II NLP+ I +++L + + + + + Sbjct: 258 N-LNIINQDVLQMDYKELSNRIGKKLWIIGNLPFYITSQILMCLLD---YRKYIDRAVIT 313 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 Q EV ER+ A S Y LSVLT T ++F +S +VF+P PKV S IH Sbjct: 314 AQWEVAERLVAPVGSKQYSILSVLTQMFTTPKILFKLSNNVFYPKPKVQSACIHL 368 >gi|296128713|ref|YP_003635963.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109] gi|296020528|gb|ADG73764.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109] Length = 319 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 125/301 (41%), Gaps = 42/301 (13%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+LD ++KI + + G V+E+G G G+LT LL Sbjct: 12 IRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVVAGERVVEVGPGLGSLTLGLLEAD 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQH-------PN--------------------RLEIIQD 102 V+ +E D +L + H P+ RL ++ Sbjct: 72 V-DVVAVEIDPVLAALLPQTVAAHVPGLAVDPHAGTENTDARTVVLRDTAGRARLTVVTQ 130 Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGER 161 DAL V P ++ANLPYN+ +L ++ DT E ++ Q EV +R Sbjct: 131 DALTV---TALPGPPPTALVANLPYNVSVPVLLTFLERFDT----LERGLVMVQAEVADR 183 Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LE 220 + A S YG S W A + VF+P+P V S ++ +P + Sbjct: 184 LAAPPGSRTYGVPSAKVAWYASARRTATVGRAVFWPAPHVDSALVRLDRRAHPAAGVPRQ 243 Query: 221 SLKKITQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 + + AF +RRK LR + E+ + AG++ +R E + + F RI Sbjct: 244 EVFAVVDAAFAQRRKMLRSALAGLAGSSAAAEDAVRAAGLDPQVRGEQVDVVGFARIAEA 303 Query: 276 L 276 L Sbjct: 304 L 304 >gi|312221933|emb|CBY01873.1| similar to dimethyladenosine transferase dimethyltransferase [Leptosphaeria maculans] Length = 379 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 25/263 (9%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+ L + + I + + V+E+G G GNLT ++L A+ V +E D + Sbjct: 36 KDLGQHILKNPGVASAIVQKAYLKQSDHVLEVGPGTGNLTVLILK-AAKAVTAVEMDPRM 94 Query: 83 FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + + RL+++ D +K + F I+N PY I + L+F +S Sbjct: 95 AAELTKRVQGTAEAKRLKVMLGDVIKTELPHF------DVCISNTPYQISSPLVFKLLSL 148 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + P S L+FQ+E R+ A+ Y RLSV K + + + + F P P+ Sbjct: 149 PSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAKVSHIMKVGRNNFNPPPQ 205 Query: 201 VTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S V+ P +P P + + + AF ++ +TLR S L A + L Sbjct: 206 VESNVVRIEPK-HPRPQIAYDEWDGLLRIAFVRKNRTLRAS--------FLGTAAV-VEL 255 Query: 260 RAENLSIEDFCRITNILTDNQDI 282 A N + FC +IL D+ I Sbjct: 256 LASNYRL--FCAQNDILLDDSPI 276 >gi|302914906|ref|XP_003051264.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI 77-13-4] gi|256732202|gb|EEU45551.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI 77-13-4] Length = 332 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 25/259 (9%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQ+ L + + I E + TV+E+G G GNLT +L A+K I +E D + Sbjct: 43 FGQHILKNPGVSDAIVEKAFLKPTDTVLEVGPGTGNLTVRILER-AKKCICVEVDPRMAA 101 Query: 85 -ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + K + R LE++ D +K + +F I+N PY I + L+F +S Sbjct: 102 EVTKRVQGTPEQRKLEVLLGDVIKTELPQF------DVCISNTPYQISSPLVFKLLSLPN 155 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 PP + L+FQ+E R+TA+ Y RLSV + K T + + + F P P+V Sbjct: 156 -PP--RTSVLMFQREFALRLTARPGDALYCRLSVNAQFWAKITHIMKVGKNNFRPPPQVE 212 Query: 203 STVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S+V+ P + + + + F ++ KTLR S LG + +L A +E N R Sbjct: 213 SSVVRIEPKTGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTKEVL--AMVERNYR 268 Query: 261 AENLSIEDFCRITNILTDN 279 +C + + D+ Sbjct: 269 T-------WCAMNGVPVDD 280 >gi|156087991|ref|XP_001611402.1| dimethyladenosine transferase [Babesia bovis T2Bo] gi|154798656|gb|EDO07834.1| dimethyladenosine transferase, putative [Babesia bovis] Length = 246 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 97 LEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 L++I DD L+VD++ + II NLP+ I +++LF + + ++ + Q Sbjct: 21 LDVIHDDVLQVDYDAVSKAKGCKLWIIGNLPFYITSQILFCLVD---YKRVIDTAVVTAQ 77 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLN 213 EV +RI A+ N Y LSV+ K ++ F I + F+P PKV S VI F N Sbjct: 78 WEVAQRIVARPNQFEYSILSVVLQLYAKPSLCFKIPNYAFYPVPKVDSGVIRLEFKNKTN 137 Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P C LK+I +++F +RRK L+ SL+ Sbjct: 138 P-ECAPLVLKRILRDSFNQRRKMLKTSLR 165 >gi|297743975|emb|CBI36945.3| unnamed protein product [Vitis vinifera] Length = 284 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%) Query: 16 HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 HY+ + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + V Sbjct: 20 HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I +E D + L+ P NRL++IQ D L+ D +F+I +AN+PY I + Sbjct: 79 IAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLP-YFDIC-----VANIPYQISS 132 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 L F ++ P + ++FQ+E R+ AQ Y RLSV Sbjct: 133 PLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLSV 174 >gi|189192010|ref|XP_001932344.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973950|gb|EDU41449.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 380 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 25/274 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S K +H K +GQ+ L + + I + + V+E+G G GNLT ++L Sbjct: 24 SAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLILK- 82 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A++V +E D + L P RL I D +K + +F I+N P Sbjct: 83 AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCISNTP 136 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + L+F ++ P L+FQ+E R+ A+ Y RLSV +K + Sbjct: 137 YQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSKVSH 193 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + + + F P P+V S V+ P NP P E + + F ++ +TLR S LG Sbjct: 194 VMKVGRNNFNPPPQVESNVVRIEPK-NPRPQIAYEEWDGLLRICFVRKNRTLRASF--LG 250 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +L L A N + FC +I D+ Sbjct: 251 TAAVLE-------LLASNYRL--FCAQNDIPVDD 275 >gi|195493555|ref|XP_002094468.1| GE21840 [Drosophila yakuba] gi|194180569|gb|EDW94180.1| GE21840 [Drosophila yakuba] Length = 207 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNS 168 + S I +I NLP+ I TRLL NW+ + +TL FQKEV +RI A Sbjct: 7 DTSQRIHLIGNLPFAISTRLLINWLEDLSCRRGAFRRIDTCMTLTFQKEVADRICAPVGG 66 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKI 225 RLSV++ T+ M F I F P P+V V+ IP P +P L ++++ Sbjct: 67 EQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPL--VERV 124 Query: 226 TQEAFGKRRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + F R+K R+ L + L +A ++ LR+ L++E R+ + + Sbjct: 125 VRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDTLRSFELTVEQCLRLAEVYS 184 Query: 278 DN 279 ++ Sbjct: 185 EH 186 >gi|330912552|ref|XP_003295983.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1] gi|311332221|gb|EFQ95920.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1] Length = 380 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 25/274 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S K +H K +GQ+ L + + I + + V+E+G G GNLT ++L Sbjct: 24 SAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLILK- 82 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A++V +E D + L P RL I D +K + +F I+N P Sbjct: 83 AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCISNTP 136 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + L+F ++ P L+FQ+E R+ A+ Y RLSV +K + Sbjct: 137 YQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSKVSH 193 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + + + F P P+V S V+ P NP P E + + F ++ +TLR S LG Sbjct: 194 VMKVGRNNFNPPPQVESNVVRIEPK-NPRPQIAYEEWDGLLRICFVRKNRTLRASF--LG 250 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +L L A N + FC +I D+ Sbjct: 251 TAAVLE-------LLASNYRL--FCAQNDIPVDD 275 >gi|302682452|ref|XP_003030907.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8] gi|300104599|gb|EFI96004.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8] Length = 329 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 12/229 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I + GQ+ L + + + I + + V+E+G G GNLT +L A+ V +E Sbjct: 36 IFKTERFGQHILNNPLVAQGIVDKANLKPTDNVLEVGPGTGNLTVRILD-KAKHVTAVEM 94 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +L+II D +K D +F++ I+N PY I + L+F Sbjct: 95 DPRMAAELTKRVQGKPEQRKLDIIIGDFVKADLP-YFDVC-----ISNTPYQISSPLVFR 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P L+FQ+E R+ A+ + + RLS K + ++ F Sbjct: 149 LLSHRPLP---RVCILMFQREFALRLVARPGTEFWSRLSANVQLYAKVDHVMKVAKSCFR 205 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 P P V S+V+ +P P P E +T+ F + K + + + G Sbjct: 206 PPPMVESSVVRIVPLDPPPPVRFEEFDGLTRIIFARPNKVVHANFQARG 254 >gi|118388069|ref|XP_001027135.1| dimethyladenosine transferase family protein [Tetrahymena thermophila] gi|89308905|gb|EAS06893.1| dimethyladenosine transferase family protein [Tetrahymena thermophila SB210] Length = 345 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 31/194 (15%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 ++ L++ +L I E S V+EIG G GNLT +LL A+KVI +E D + Sbjct: 14 NKHILVNPQMLHSIVEKSAIRPTDIVLEIGPGTGNLTALLLE-KAKKVIAVEIDPRMVAE 72 Query: 86 LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L SQH ++ E+IQ DA+ +F FF++ +AN PY I + L+F +S Sbjct: 73 LNKRFKYSQHAHKFELIQGDAISTEFP-FFDVC-----VANTPYQISSPLVFKLLSHR-- 124 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ LSV +K + + + F P PKV S Sbjct: 125 -PLFRHAVLMFQ------------------LSVNVQLLSKCDHLIKVGKNNFKPPPKVES 165 Query: 204 TVIHFIPHLNPIPC 217 +VI P NP P Sbjct: 166 SVIRIEPK-NPAPV 178 >gi|70987085|ref|XP_749024.1| dimethyladenosine transferase [Aspergillus fumigatus Af293] gi|66846654|gb|EAL86986.1| dimethyladenosine transferase [Aspergillus fumigatus Af293] gi|159123206|gb|EDP48326.1| dimethyladenosine transferase [Aspergillus fumigatus A1163] Length = 392 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 11/217 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I I + + TV+E+G G G LT +L A+KVI +E D + Sbjct: 38 IGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141 + P +L++I D +K D K P +I I+N PY I + L+F +S Sbjct: 97 EVTKTVQGTPAEKKLQVILGDFVKTDLSKL----PPFQICISNTPYQISSPLIFKLLSMP 152 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+ Q+E R+ A+ Y RLSV + ++ + + + + F P P+V Sbjct: 153 NPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFRPPPQV 209 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 S+V+ P + + + + F ++ KTLR Sbjct: 210 ESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLR 246 >gi|325973708|ref|YP_004250772.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois] gi|323652310|gb|ADX98392.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois] Length = 259 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 13/249 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ + Q FL + NI K+IA + S ++EIG G G +TQ + L + + +E D Sbjct: 4 KRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEVDS- 61 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + ++S+ I+ D L + E + FN + + N+PY+I T++L ++ Sbjct: 62 --SLCSHLTSKFTTA-NILNKDFLLLQEEDIQLFN-EQKVLLFGNIPYSISTKILLKFLY 117 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + E L+ QKE E I+A+ N+ Y L+V + +F+I+ F+P P Sbjct: 118 INHF----EESFLMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFYPKP 173 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 KV S L+ ++ F RK L +L+++ EN+L + + NL Sbjct: 174 KVDSIFFSIKKKEKYSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYKNNL 233 Query: 260 RAENLSIED 268 +N+ I++ Sbjct: 234 -LKNIRIQE 241 >gi|325990151|ref|YP_004249850.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma suis KI3806] gi|323575236|emb|CBZ40901.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma suis] Length = 262 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 13/252 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I K+ + Q FL + NI K+IA + S ++EIG G G +TQ + L + + +E Sbjct: 4 IKQKRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIRIIANLPYNIGTRLLFN 136 D + ++S+ I+ D L + E + FN + + N+PY+I T++L Sbjct: 63 DS---SLCSHLTSKFTTA-NILNKDFLLLQEEDIQLFN-EQKVLLFGNIPYSISTKILLK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + F ES L+ QKE E I+A+ N+ Y L+V + +F+I+ F+ Sbjct: 118 FLYIN---HFEESF-LMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFY 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P PKV S L+ ++ F RK L +L+++ EN+L + + Sbjct: 174 PKPKVDSIFFSIKKKEKHSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYK 233 Query: 257 TNLRAENLSIED 268 NL +N+ I++ Sbjct: 234 NNL-LKNIRIQE 244 >gi|119482754|ref|XP_001261405.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181] gi|119409560|gb|EAW19508.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181] Length = 393 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 11/217 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I I + + TV+E+G G G LT +L A+KVI +E D + Sbjct: 39 IGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141 + P +L++I D +K D K P +I I+N PY I + L+F +S Sbjct: 98 EVTKTVQGTPAEKKLQVILGDFVKTDLSKL----PPFQICISNTPYQISSPLIFKLLSMP 153 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+ Q+E R+ A+ Y RLSV + ++ + + + + F P P+V Sbjct: 154 NPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHVMKVGKNNFRPPPQV 210 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 S+V+ P + + + + F ++ KTLR Sbjct: 211 ESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLR 247 >gi|302348251|ref|YP_003815889.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15] gi|302328663|gb|ADL18858.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15] Length = 250 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 123/254 (48%), Gaps = 16/254 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ FL++ + + E +G+ V+E+G G G LT + + AR+V+ +E D++ Sbjct: 7 LGQRFLVNKDGVSLFLEGLSGFEGLDVLEVGPGEGQLTVSIANV-ARRVLAVEFDRE--- 62 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + ++ P + ++ D + SP+ +++N P+ + + ++ N + Sbjct: 63 LAARLVARVPYNVSVVVGDGARYALIA----RSPV-LVSNTPFYLSSSIITNAARNNN-- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF-PSPKVTS 203 E + L Q EV +R+TA+ S YGRLSV++ + T + + P +F P PKV + Sbjct: 116 --LELMVLGLQLEVAKRVTARPGSELYGRLSVISQAYFR-TQIIGVMPSSWFKPRPKVDA 172 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 V+ + P E+L+K+T+ F R K + ++ R G + ++ R + Sbjct: 173 AVVRMVRIRRWDPTG-EALEKVTRCLFSYRNKLVTKAALRCLGSVPEDFKSLPSSTRVRD 231 Query: 264 LSIEDFCRITNILT 277 L+ E + L+ Sbjct: 232 LAPEQLIGVAKWLS 245 >gi|328785046|ref|XP_624425.2| PREDICTED: probable dimethyladenosine transferase-like [Apis mellifera] Length = 280 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 16/191 (8%) Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + + ++L+I+ D LK D FF++ +AN+PY I + L+F + P + Sbjct: 68 TAYQSKLQIMIGDVLKTDLP-FFDLC-----VANIPYQISSPLVFKLL---LHRPMFRCA 118 Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 L+FQ+E ER+ A+ Y RLS+ T + ++ + + F P PKV S V+ P Sbjct: 119 ILMFQREFAERLVAKPGDKLYCRLSINTQLLARVDLLMKVGKNNFRPPPKVESNVVRIEP 178 Query: 211 HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLS 265 P P + +T+ AF ++ KTL + K+ +L + + + E + Sbjct: 179 RNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQTTVLTMLEKNYKLHCSLNNKIITEGFN 238 Query: 266 IEDFCRITNIL 276 I+D I++IL Sbjct: 239 IKDM--ISDIL 247 >gi|47157009|gb|AAT12376.1| putative dimethyladenosine transferase-like protein [Antonospora locustae] Length = 219 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 29/216 (13%) Query: 72 KVIVIEKDQQFFP-ILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 K++ EKD + ++K +S++H ++ E+ DAL+ F F I+N+PY I Sbjct: 1 KLVCYEKDTRLAAELVKKVSARHLSHKFELNVGDALRATFPPF------DMCISNIPYQI 54 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF + D ++ ++FQ+E +R+ A+ Y RLSV K + + Sbjct: 55 SSPLLFKLLQED-----FKCAYIMFQREFAQRLIARPGCSEYSRLSVAVQLLAKVHNVMN 109 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--------RKTLRQSL 241 +S + F P P V S+V+ P + P +E ++ + F ++ ++T+ Q + Sbjct: 110 VSRNSFVPPPMVDSSVVRIEPRVPRPPINIEEFNRLLKICFLRKNKRLSGIFKRTVIQDM 169 Query: 242 KRLGGENLLHQ-----AGIETNL---RAENLSIEDF 269 +++ L + GI L RA + IEDF Sbjct: 170 QKVNKAYTLQEIEKKTTGILRKLGADRAAKMDIEDF 205 >gi|315301058|ref|ZP_07872369.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596] gi|313630573|gb|EFR98395.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596] Length = 128 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 7/117 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A++ Sbjct: 14 ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEINKETNVIEIGPGIGALTEQLAK-AAKE 72 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIAN 124 V+ E DQ+ PIL D S + N ++++ D LK + E +F + P++I+AN Sbjct: 73 VVAFEIDQRLLPILDDTLSAYDN-IKVVHGDVLKANVEEVISTQFTHPELPLKIVAN 128 >gi|289670944|ref|ZP_06492019.1| dimethyladenosine transferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 152 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 S + KK +GQ+FL D + +I ++ G ++EIG G G +T LL RK Sbjct: 3 SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL----RKHG 58 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + VIE D+ L + ++ L II D L VDF + +PIR++ NLPYNI + Sbjct: 59 ALTVIEFDRDLIAPLTEAAAP-IGALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISS 116 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 +LF+ + + + QKEV +R+ A SP Sbjct: 117 PILFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSP 151 >gi|148686526|gb|EDL18473.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus] gi|148686527|gb|EDL18474.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus] Length = 236 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 ++L+++ D LK D FF+ +ANLPY I + +F + PF+ L+F Sbjct: 28 SKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---LHRPFFRCAILMF 78 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 Q+E R+ A+ Y RLS+ T + + + + F P PKV S+V+ P P Sbjct: 79 QREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP 138 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDF 269 P + + + F ++ KTL + K + LL + ++ + E+ SI D Sbjct: 139 PPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPEDFSIAD- 197 Query: 270 CRITNILT 277 +I ILT Sbjct: 198 -KIQQILT 204 >gi|320583126|gb|EFW97342.1| dimethyladenosine transferase [Pichia angusta DL-1] Length = 319 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 11/220 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I + I + + V+EIG G GNLT +L ARKVI E D + Sbjct: 30 LGQHILKNPLIAQGIVDKAEIRPSDVVLEIGPGTGNLTVRILE-KARKVIASEVDPKMAA 88 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEII D +K++ +F++ I+N PY I + ++F +S Sbjct: 89 ELTKRVQGTPYEKKLEIIMGDFMKLETLPYFDVC-----ISNTPYQISSGIVFKLLSMPR 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E +TA+ Y RLS + + + F P PKV Sbjct: 144 PP---RIAVLMFQREFAMNLTARPGDALYNRLSANAQMWANVKHVMKVGKNNFRPPPKVE 200 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 S+V+ P + + + F ++ KTL + + Sbjct: 201 SSVVKVEPKIPRPNLDYNEWDGLLRFCFNRKNKTLNATFR 240 >gi|297294370|ref|XP_001085304.2| PREDICTED: probable dimethyladenosine transferase [Macaca mulatta] Length = 284 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 18/213 (8%) Query: 72 KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 KV+ E D + L P ++L+++ D LK D FF+ +ANLPY I Sbjct: 51 KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQI 104 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + Sbjct: 105 SSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMK 161 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + + F P PKV S+V+ P P P + + + F ++ KTL + K + L Sbjct: 162 VGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQL 221 Query: 250 LHQ-----AGIETNLRAENLSIEDFCRITNILT 277 L + + + E+ SI D +I ILT Sbjct: 222 LEKNYRIHCSVHNIIIPEDFSIAD--KIQQILT 252 >gi|289757093|ref|ZP_06516471.1| predicted protein [Mycobacterium tuberculosis T85] gi|289712657|gb|EFD76669.1| predicted protein [Mycobacterium tuberculosis T85] Length = 207 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 14/178 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 +L +D E ++P ++ANLPYN+ L + + P +T++ Q EV ER+ Sbjct: 6 SLALDREDL--AAAPTAVVANLPYNVAVPALLHLLVEF---PSIRVVTVMVQAEVAERLA 60 Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL 222 A+ S YG SV + + +SP VF+P P+V S ++ + +P P Sbjct: 61 AEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFR 120 Query: 223 KKITQE---AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 +++ + AF +RRKT R + + G N L A I+ R E LSI+DF R+ Sbjct: 121 RRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 178 >gi|316973725|gb|EFV57284.1| putative C2 domain protein [Trichinella spiralis] Length = 1392 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 17/172 (9%) Query: 118 PIRIIANLPYNIGTRLLFNWISADTW--PPFWES---LTLLFQKEVGERITAQKNSPHYG 172 P+ +I NLP+N+ T L+ W+ A + PF LTL FQKEVG R+ A + H Sbjct: 1171 PVHVIGNLPFNVSTYLIIKWLRAMSLHEGPFVYGRTLLTLTFQKEVGLRMLAPIFNRHRC 1230 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFG 231 RLSV+ + + F I PSP V V+ F P + P IP + ++K + F Sbjct: 1231 RLSVMCQYLSDVKRKFTIPGRACVPSPDVDVAVMQFRPKVTPVIPHHFDLVEKFCRHVFH 1290 Query: 232 KRRKTLRQS--------LKRLGGENLLHQAGIETNLRAENLSIE---DFCRI 272 R K + LK+ +L A + L L+IE D C+I Sbjct: 1291 YRNKYCIRGIETLFPDFLKKDFSHEILRFARVSPKLAPPALAIEEIRDMCKI 1342 >gi|299740974|ref|XP_001834135.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea okayama7#130] gi|298404496|gb|EAU87730.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea okayama7#130] Length = 318 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQ+ L + +KI +++ V+E+G G GNLT +L A+ V +E D + Sbjct: 39 GQHILKNTQTAQKIVDAANLKPTDKVLEVGPGTGNLTVKILE-KAKHVTAVEMDPRMAAE 97 Query: 85 ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +LK + R LE+I D +K + +F + I+N PY I + L+F +S Sbjct: 98 VLKRVQGTPEQRKLEVIIGDFVKAEI-PYFEVC-----ISNTPYQISSPLVFRLLSHR-- 149 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ+E R+ A+ + + RLS K + ++ + F P P+V S Sbjct: 150 -PLFRVAILMFQREFALRLVARPGTSLWSRLSANVQLYAKVDNIMHVNRNDFRPPPQVES 208 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 +VI +P P P E + + F + KT+R + + G +L Q Sbjct: 209 SVIRLVPLDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ 257 >gi|215445160|ref|ZP_03431912.1| dimethyladenosine transferase [Mycobacterium tuberculosis T85] Length = 209 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 14/178 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 +L +D E ++P ++ANLPYN+ L + + P +T++ Q EV ER+ Sbjct: 8 SLALDREDL--AAAPTAVVANLPYNVAVPALLHLLVEF---PSIRVVTVMVQAEVAERLA 62 Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL 222 A+ S YG SV + + +SP VF+P P+V S ++ + +P P Sbjct: 63 AEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFR 122 Query: 223 KKITQE---AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 +++ + AF +RRKT R + + G N L A I+ R E LSI+DF R+ Sbjct: 123 RRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 180 >gi|115630|sp|P13079|CARB_STRTH RecName: Full=rRNA methyltransferase; AltName: Full=Carbomycin-resistance protein gi|99022|pir||A26512 carB protein - Streptomyces sp gi|153200|gb|AAC32026.1| carbomycin resistance protein [Streptomyces thermotolerans] Length = 299 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 17/225 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL+D +++ + G V+E+GAG G +T+ L L R+V+ E D+ Sbjct: 49 RRVHGQNFLVDRETVQRFVRFADPDPGEVVLEVGAGNGAITRELARL-CRRVVAYEIDRH 107 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISA 140 F L++ +++ P R+E++ D LK K P ++ N+P+ T + +W ++A Sbjct: 108 FADRLREATAEDP-RIEVVAGDFLKTSQPKV-----PFSVVGNIPFG-NTADIVDWCLNA 160 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + TL+ Q E + T + RL+V T + M IS F P P Sbjct: 161 RR----LRTTTLVTQLEYARKRTGGYR--RWSRLTVATWPEVEWRMGERISRRWFRPVPA 214 Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S V+ P+ P + + + + F + +L SL+R Sbjct: 215 VDSAVLRLERRPVPLIPPGLMHDFRDLVETGFTGKGGSLDASLRR 259 >gi|154310501|ref|XP_001554582.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10] gi|150851502|gb|EDN26695.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10] Length = 214 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 12/190 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 32 KDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILE-SAKKVIAVEVDPRM 90 Query: 83 FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P RLE++ D +K + F++ I+N PY I + L+F +S Sbjct: 91 AAEVTKRVQGKPEQKRLEVLLGDVIKTELP-HFDV-----CISNTPYQISSPLVFKLLSL 144 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P ++FQ+E R+TA+ Y RLSV + K T + + + F P P+ Sbjct: 145 PNPP---RCSVVMFQREFALRLTARPGDSLYCRLSVNAQFFAKITPIMKVGKNNFRPPPQ 201 Query: 201 VTSTVIHFIP 210 S V P Sbjct: 202 GESCVGRIEP 211 >gi|50551823|ref|XP_503386.1| YALI0E00770p [Yarrowia lipolytica] gi|52782774|sp|Q6C7H6|DIM1_YARLI RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49649255|emb|CAG78965.1| YALI0E00770p [Yarrowia lipolytica] Length = 317 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + S TV+E+G G GNLT +L ARKVI +E D + Sbjct: 34 LGQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 92 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F++ I+N PY I + L+F ++ Sbjct: 93 ELTKRVQGKPEQKKLEIMLGDCIKTELP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 146 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ E R+ A+ Y RLSV K + + + F P P V Sbjct: 147 PP---RVSVLMFQHEFAMRLLARPGDSLYCRLSVNVQMWAKVSHVMKVGRGNFRPPPNVE 203 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 204 SSVVK-IEVKNPRP 216 >gi|168702403|ref|ZP_02734680.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246] Length = 261 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 17/214 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L + + + PK +GQNFL+DLN+L I ++ V+E+G G G+LT L Sbjct: 26 LHRLFEAHGLSPKSKLGQNFLIDLNLLDLIVRTAELDKSDAVLEVGTGTGSLTAKLAD-P 84 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----------- 118 A V+ +E D+ P+ K+I N + + DAL E ++ S Sbjct: 85 AGVVVTVEVDRSIQPVAKEIVGGRSN-VRFVFGDALAKKSELNPDMLSTWDAAAKEVGCT 143 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++ANLPY I T L+ N + P E + ++ Q E+ ER+ A N+ Y LSVL Sbjct: 144 RKKLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVL 200 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 + ++P F P PKV S ++ P+ Sbjct: 201 VQSVADVETVRKVAPTNFHPRPKVDSAIVLIKPN 234 >gi|254568850|ref|XP_002491535.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase) [Pichia pastoris GS115] gi|238031332|emb|CAY69255.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase) [Pichia pastoris GS115] gi|328351956|emb|CCA38355.1| dimethyladenosine transferase [Pichia pastoris CBS 7435] Length = 328 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L ARKVI E D + Sbjct: 39 LGQHILKNPLVAQGIVDKANIRPSDTVLEVGPGTGNLTMRILQ-KARKVIASEMDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +L+II D +K D +F+I I+N PY I + L+F ++ Sbjct: 98 ELTKRVQGKPEQKKLDIILGDFIKQDLP-YFDIC-----ISNTPYQISSPLVFKLLNQPK 151 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV T + + + F P P+V Sbjct: 152 PP---RVAILMFQREFALRLLARPGDSLYCRLSVNVQMWANVTHIMKVGRNNFRPPPQVE 208 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 209 SSVVR-IEVKNPRP 221 >gi|86742643|ref|YP_483043.1| dimethyladenosine transferase [Frankia sp. CcI3] gi|86569505|gb|ABD13314.1| dimethyladenosine transferase [Frankia sp. CcI3] Length = 251 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 16/229 (6%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHP----NRLEIIQDDA 104 TV+EIG G G++T + L A+ V+ +E D+ L ++++ P RL ++ D Sbjct: 12 TVLEIGPGLGSMT-LGLVEAAKAVVAVEVDRPLAAALPVTVAARLPADVAERLRVVAADG 70 Query: 105 LKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 L+V ++++P + ANLPYNI LL + P ++ Q EV +R+T Sbjct: 71 LRVTLADLPADVAAPGVLAANLPYNIAVPLLLGLLERL---PSLRRGLVMVQAEVADRLT 127 Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-L 222 A S YG SV W A + VF+P P V S ++ F P P L + + Sbjct: 128 APPGSRVYGAPSVKLAWYAHARPAGAVPRPVFWPQPNVDSGLVAFARRPLPGPARLRADV 187 Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-----IETNLRAENLSI 266 AF +RRKTLR +L G ++ R E L I Sbjct: 188 FAAIDAAFAQRRKTLRTALAPWAGSPAAAGDLARAAEVDPGARGETLDI 236 >gi|68467333|ref|XP_722328.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|68467562|ref|XP_722214.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|46444170|gb|EAL03447.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|46444295|gb|EAL03571.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|238878254|gb|EEQ41892.1| dimethyladenosine transferase [Candida albicans WO-1] Length = 326 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI +E D + Sbjct: 36 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 94 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K D +F+I I+N PY I + L+F ++ Sbjct: 95 ELTKRVHGTPQEKKLEILLGDFMKTDLP-YFDIC-----ISNTPYQISSPLVFKLLNQPR 148 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E +R+ A+ Y RLS T + + + F P P+V Sbjct: 149 PP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 206 SSVVR-IEIKNPRP 218 >gi|56759186|gb|AAW27733.1| SJCHGC05919 protein [Schistosoma japonicum] Length = 289 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 14/170 (8%) Query: 114 NISSP-IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKN 167 NI+SP + +I NLP++I T L+ W+ W SLTL FQKEV ER+ A Sbjct: 58 NINSPRMFVIGNLPFSISTPLISRWLHDIAERRGIWRYGRVSLTLTFQKEVAERLAADVW 117 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKIT 226 RLS+++ M DI F P PKV V+ P P IP ++K+ Sbjct: 118 DEQRSRLSIMSQAYCDVKYMKDIPGTAFVPPPKVDVGVVRLTPLKEPLIPVPYPYVEKLV 177 Query: 227 QEAFGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDF 269 ++AF R+K + + L+ L + L +AG++ + L++ +F Sbjct: 178 RQAFHFRQKQIIRCLETLFPSDRPELVIQLFKEAGVQPVKQCIQLTMPEF 227 >gi|241950377|ref|XP_002417911.1| 18S rRNA dimethylase, putative; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase, putative; dimethyladenosine transferase, putative [Candida dubliniensis CD36] gi|223641249|emb|CAX45629.1| 18S rRNA dimethylase, putative [Candida dubliniensis CD36] Length = 330 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI +E D + Sbjct: 36 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 94 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K D +F+I I+N PY I + L+F ++ Sbjct: 95 ELTKRVHGTPQEKKLEILLGDFMKTDLP-YFDIC-----ISNTPYQISSPLVFKLLNQPR 148 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E +R+ A+ Y RLS T + + + F P P+V Sbjct: 149 PP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 206 SSVVR-IEVKNPRP 218 >gi|296420592|ref|XP_002839853.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636059|emb|CAZ84044.1| unnamed protein product [Tuber melanosporum] Length = 294 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I +G V+E+G G GNLT +L ARKVI +E D + Sbjct: 41 LGQHILKNPGVAQAIVNKAGLKQSDVVLEVGPGTGNLTVKILE-QARKVIAVEMDPRMAA 99 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P R+EI+ D +K + +F++ I+N PY I + L+F ++ Sbjct: 100 ELTKRVQGKPEQTRVEILLGDVIKTEL-PYFDVC-----ISNTPYQISSPLVFKLLALSP 153 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P + L+FQ+E R+ AQ Y RLSV Sbjct: 154 AP---RTCILMFQREFAMRVVAQPGDTLYCRLSV 184 >gi|149239484|ref|XP_001525618.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL YB-4239] gi|146451111|gb|EDK45367.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL YB-4239] Length = 329 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 23/264 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI E D + Sbjct: 36 LGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 94 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F+I I+N PY I + L+F ++ Sbjct: 95 ELTKRVHGTPQEKKLEILLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLLNQPN 148 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P PKV Sbjct: 149 PP---RVSILMFQREFAMRLVARPGDELYCRLSANVQMWANVTHIMKVGKNNFRPPPKVE 205 Query: 203 STVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---------Q 252 S+V+ I NP P + + F ++ KT+ K L ++L Q Sbjct: 206 SSVVR-IEIKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSLNVIDILEKNYKTWLATQ 264 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 AGIE + ++D + +++ Sbjct: 265 AGIEGLQEDATMIVDDKAGLKDVV 288 >gi|1169553|sp|P45438|ERMK_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143195|gb|AAA22595.1| erythromycin-inducible 23S ribosomal RNA methylase [Bacillus licheniformis] Length = 287 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 36/195 (18%) Query: 24 YMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 + GQ+ + + ++++I + + S+D TV+E+GAG G LT ML + A KV+ +E D +F Sbjct: 21 FSGQHLMHNKKLIEEIVDRANISIDD-TVLELGAGKGALTTML-SQKAGKVLAVENDSKF 78 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGT---RLLFNW 137 IL ++QHPN +II D +K+ EKF +++N+PY I T ++L N Sbjct: 79 VAILTRKTAQHPN-TKIIHQDIMKIHLPKEKFV-------VVSNIPYAITTPIMKMLLNN 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------IS 191 ++ ++ ++ +K +R T++ + + S + WR M FD IS Sbjct: 131 PASG-----FQKGIIVMEKGAAKRFTSK-----FIKNSYVLAWR----MWFDIGIVREIS 176 Query: 192 PHVFFPSPKVTSTVI 206 F P PKV S ++ Sbjct: 177 KEHFSPPPKVDSAMV 191 >gi|221091001|ref|XP_002169774.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 175 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y + KK + QNF+LDLN+ KIA + D VIE+G+GPG+L++ LL G R + + Sbjct: 23 YGLRAKKQLSQNFILDLNVTDKIARKADVFD-CNVIEVGSGPGSLSRSLLNAGLRHLYAV 81 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 E D++F P L+ + + I D LK D K Sbjct: 82 EIDKRFLPSLELLQDASDGHMSIYHADILKFDMVK 116 >gi|313141396|ref|ZP_07803589.1| dimethyladenosine transferase dimethyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130427|gb|EFR48044.1| dimethyladenosine transferase dimethyltransferase [Helicobacter canadensis MIT 98-5491] Length = 152 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%) Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I T L+ I P + ++ QKEV + A +N + LSVL +A Sbjct: 1 MPYYIATLLVIKAIKD----PLCKGCVVMTQKEVALKFCAIQNQSDFSALSVLAQSVGEA 56 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLK 242 M+F++ P F P PKVTS V F+ N IP L L+++ + AF RKTL +L Sbjct: 57 KMLFEVPPSAFVPQPKVTSAV--FLIEKNHIPSSDFLVKLEELLKIAFSAPRKTLFNNLS 114 Query: 243 RLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++ + L GI +N R + D+ R+ +L Sbjct: 115 KVYSKEKIMETLETLGIVSNKRPHEIDTTDYHRLLKLL 152 >gi|302509638|ref|XP_003016779.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371] gi|291180349|gb|EFE36134.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371] Length = 364 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 26/219 (11%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 39 IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P RLE++ D +K + ISSP L F ++ + Sbjct: 98 ELTKRVQGKPEQKRLEVLLGDVMKTE------ISSP--------------LTFKLLATNP 137 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 138 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 194 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ +P + + + + AF ++ KTLR S Sbjct: 195 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233 >gi|302654957|ref|XP_003019274.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517] gi|291182988|gb|EFE38629.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517] Length = 364 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 26/219 (11%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E D + Sbjct: 39 IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P RLE++ D +K + ISSP L F ++ + Sbjct: 98 ELTKRVQGKPEQKRLEVLLGDVMKTE------ISSP--------------LTFKLLATNP 137 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 138 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 194 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ +P + + + + AF ++ KTLR S Sbjct: 195 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233 >gi|255728801|ref|XP_002549326.1| dimethyladenosine transferase [Candida tropicalis MYA-3404] gi|240133642|gb|EER33198.1| dimethyladenosine transferase [Candida tropicalis MYA-3404] Length = 324 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E D + Sbjct: 36 LGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-KARKVVAVEMDPRMAA 94 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F+I I+N PY I + L+F ++ Sbjct: 95 ELTKRVHGTPQEKKLEILLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLLNQPR 148 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E +R+ A+ Y RLS T + + + F P P+V Sbjct: 149 PP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 206 SSVVR-IEVKNPRP 218 >gi|242788270|ref|XP_002481185.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500] gi|218721332|gb|EED20751.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500] Length = 421 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 +L ++ +IA++ + ++G G G LT+ +L A+ IE D + L + Sbjct: 68 MLSISCKTRIAQAD------NIAQVGPGTGVLTRRILA-KAKSCTAIELDPRMAAELTKM 120 Query: 90 SSQHP--NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 P +L+II D +KVD ++ F++ I+N PY I + L+F + A PP Sbjct: 121 VQGTPMQRKLKIILGDFIKVDLKEIGHFDV-----FISNTPYQISSPLVFKLL-AMPRPP 174 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 L+ Q+E +R+ A+ Y RLSV + + + + + F P P+V S+V Sbjct: 175 --RVSILMVQREFAQRLIARPGDAMYSRLSVNAQFHAICSHILKVGKNNFSPPPQVESSV 232 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + P + E L + + F ++ KTLR S Sbjct: 233 VRIEPRPDRPDISWEELDGMLRICFNRKNKTLRSSF 268 >gi|320100239|ref|YP_004175831.1| ribosomal RNA adenine methylase transferase [Desulfurococcus mucosus DSM 2162] gi|319752591|gb|ADV64349.1| ribosomal RNA adenine methylase transferase [Desulfurococcus mucosus DSM 2162] Length = 278 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 25/243 (10%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +L+ + SH + P++ + QNF++D +LK + LD EIG G G LT M L Sbjct: 17 SWTLRVLQSH-GLKPRRRLSQNFIVDPALLKGFTRNVEYLD---TFEIGCGIGTLT-MSL 71 Query: 67 TLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIA 123 + ++I +E D + +++I + + + ++ DA + +P +++ Sbjct: 72 SRFVPRLICVEIDWRLLEAAVENIDAAN---VVLVNADA---------TVYTPPSKQVVG 119 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY+I + +L +T Q++V ERITA YGR+++L + Sbjct: 120 NIPYHITSEILTGVARLNTV----TRAVFTVQRDVAERITAAPGDRRYGRITILLNALFE 175 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + F+P P V ++I + P +E+L+ +T+ F +RR+ + L+R Sbjct: 176 IKVAGTYGSSSFYPEPGVEHSIIVMVRR-APFNRDVEALEALTRAVFTQRRRIALRVLER 234 Query: 244 LGG 246 + G Sbjct: 235 VLG 237 >gi|167042718|gb|ABZ07438.1| putative ribosomal RNA adenine dimethylase [uncultured marine crenarchaeote HF4000_ANIW133O4] Length = 233 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 23/226 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 +K +GQ+FL I K I S+ V+EIG G G L L A++V IEKDQ Sbjct: 3 KRKNLGQHFLKSKTIAKSIVSSANITRNDFVLEIGTGYGILIPYLCK-NAKQVFSIEKDQ 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWIS 139 K + N L +++ FN + ++NLPY+ +R W+ Sbjct: 62 NLHLSAKSNFHDYTN---------LVLEYGDGFNSDHNFSVFVSNLPYS-KSRFAIEWLL 111 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + ++ QKE E++++ N H +SVL + + + ++ FFP P Sbjct: 112 QKKFSR----AVIMVQKEFSEKLSS--NEKHMA-ISVLANYGFRIKFLMNVKKSNFFPMP 164 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 KV S VI + ++K+I F RRKTL+ LK+ G Sbjct: 165 KVDSVVILLEQKRIISKVLISTVKRI----FSYRRKTLQNILKQFG 206 >gi|126276136|ref|XP_001387199.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) [Scheffersomyces stipitis CBS 6054] gi|126213068|gb|EAZ63176.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) [Pichia stipitis CBS 6054] Length = 323 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 12/185 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + +G V+E+G G GNLT +L ARKV+ +E D + Sbjct: 36 LGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 94 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K D +F++ I+N PY I + L+F ++ Sbjct: 95 ELTKRVHGTPQQKKLEILLGDFMKTDLP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 148 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 149 PP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205 Query: 203 STVIH 207 S+V+ Sbjct: 206 SSVVR 210 >gi|85099447|ref|XP_960790.1| dimethyladenosine transferase [Neurospora crassa OR74A] gi|28922314|gb|EAA31554.1| dimethyladenosine transferase [Neurospora crassa OR74A] Length = 398 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 13/219 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I I + + V+E+G G GN+T L A+KVI IE D + Sbjct: 39 KDFGQHILKNPGISDAIVDKAFLKPTDVVVEVGPGTGNITVRALE-KAKKVIAIELDPRM 97 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P +LE+I D +K+ + +I+N PY I + L+F ++ Sbjct: 98 GAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAM 152 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P L+FQ+E +R+ A+ Y RLSV + + + F P PK Sbjct: 153 PNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPK 209 Query: 201 VTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTL 237 V S V+ P + E + + AF ++ KTL Sbjct: 210 VESDVVRIEPLVGSARPNIAFEEFDGLLRIAFNRKNKTL 248 >gi|307092008|gb|ADN28339.1| putative rRNA methyltransferase [uncultured bacterium] Length = 113 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 12/115 (10%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D I+ +I E+S + G TV+EIG G G LTQ L+ GA KVI +E D P L++ Sbjct: 2 DEGIVAEIIEASAIVKGETVLEIGPGTGVLTQALVEAGA-KVIAVEADPDLIPALEE--- 57 Query: 92 QHPNRLEIIQDDALKVDFE--KFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +R+E+++ D L+ + + K F +++AN+PYNI + +L ++ D+ P Sbjct: 58 TFGDRIELVESDVLETNLKLPKLF------KLVANIPYNITSDVLHRSLTGDSRP 106 >gi|50420303|ref|XP_458685.1| DEHA2D05038p [Debaryomyces hansenii CBS767] gi|52782772|sp|Q6BSY5|DIM1_DEBHA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49654352|emb|CAG86824.1| DEHA2D05038p [Debaryomyces hansenii] Length = 327 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + +G V+E+G G GNLT +L ARKVI E D + Sbjct: 36 LGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 94 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L PN +L+I+ D +K + +F++ I+N PY I + L+F ++ Sbjct: 95 ELTKRVHGTPNQKKLDILLGDFIKTELP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 148 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + +S + F P P+V Sbjct: 149 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVSKNNFRPPPQVE 205 Query: 203 STVIH 207 S+V+ Sbjct: 206 SSVVR 210 >gi|218884716|ref|YP_002429098.1| Probable dimethyladenosine transferase [Desulfurococcus kamchatkensis 1221n] gi|218766332|gb|ACL11731.1| Probable dimethyladenosine transferase [Desulfurococcus kamchatkensis 1221n] Length = 278 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 122/242 (50%), Gaps = 26/242 (10%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +IL + + P++ + QNF++D +++ ++ EIG G G LT + L+ Sbjct: 21 SILREHGLRPRRKLSQNFIVDPRLIRDFISH---VNHAETTEIGCGLGTLT-IPLSRVVP 76 Query: 72 KVIVIEKDQQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++I IE D++ I +K++++ N L I D F + +++ N+PY++ Sbjct: 77 RLICIEIDEKLLGIAVKNLNTS--NTLFINADATKYTVFSR--------QVVGNIPYHVT 126 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL--TGWRTKATMMF 188 + +L + ++ E + QK+V ER+ A+ S YGR+++L T + + T ++ Sbjct: 127 SNILVSIARSNNV----ERVVFTLQKDVAERLVAKPGSKQYGRITILLNTLFNIEITGIY 182 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK-TLRQSLKRLG-G 246 P F+P PKV +I + + +L+K+T+ F +RR+ LR K LG G Sbjct: 183 --GPSSFYPEPKVGHAIIT-LTRRRVFNQDVFALEKLTRLLFTQRRRIALRVLTKSLGIG 239 Query: 247 EN 248 E+ Sbjct: 240 ED 241 >gi|581699|emb|CAA55770.1| lmrB [Streptomyces lincolnensis] gi|159796252|gb|ABX00620.1| LmrB [Streptomyces lincolnensis] Length = 279 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 29/230 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL+D +I+K I ++ +G ++++GAG G LT L LG R V +E D + Sbjct: 8 RQELGQNFLVDPDIIKLIRRAAERTEG-PIVDLGAGDGALTLPLSRLG-RPVTAVELDPR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K +S++ P ++++ +D L +F + P ++ N+P+++ T + + A Sbjct: 66 R---VKRLSARAPENVKVVGEDIL-----RFRLPTVPHTVVGNIPFHVTTATMRRILVA- 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS-----PH-VF 195 P W S L+ Q EV R G S++T ++ FD S P F Sbjct: 117 ---PAWVSAVLVVQWEVARRRAG------IGGCSLVT---AESWPWFDFSVLKRVPRFAF 164 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 P+P V ++ P+ + ++ F R LR+ L+R+G Sbjct: 165 RPAPSVDGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIG 214 >gi|212543995|ref|XP_002152152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224] gi|210067059|gb|EEA21152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224] Length = 401 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 22/239 (9%) Query: 16 HYKIIPKKYMGQNFLLDLN------ILKKIAESSGSLDGITVIE---IGAGPGNLTQMLL 66 + K +P + +N + N ILK + +D + E +G G G LT+ +L Sbjct: 18 YTKNMPSGSLKKNPIFKFNTDIGQHILKNPGIADAIVDKANIKEHEVVGPGTGVLTRRIL 77 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKF--FNISSPIRII 122 A+ IE D + L + P +L II D +KVD ++ F++ I Sbjct: 78 A-KAKSCTAIELDPRMAAELTKMVQGTPMQKKLRIILGDFIKVDLKEIGHFDV-----FI 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +N PY I + L+F ++ P L+ Q+E +R+ A+ Y RLSV + Sbjct: 132 SNTPYQISSPLVFKLLAMPRPP---RVSVLMVQREFAQRLIARPGDAMYSRLSVNAQFHA 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + + + F P P+V S+V+ P + E L + + F ++ KTLR S Sbjct: 189 ICSHILKVGKNNFSPPPQVESSVVKIEPRPDRPDISWEELDGMLRICFNRKNKTLRSSF 247 >gi|50306253|ref|XP_453098.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|52788270|sp|P78697|DIM1_KLULA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49642232|emb|CAH00194.1| KLLA0D00594p [Kluyveromyces lactis] Length = 320 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+EIG G GNLT +L ARKV+ +E D + Sbjct: 35 LGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILE-QARKVVAVEFDPRMAA 93 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F++ I+N PY I + L+F I+ Sbjct: 94 ELTKRVHGTPVEKKLEILLGDFMKTELP-YFDVC-----ISNTPYQISSPLVFKLINQPK 147 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P PKV Sbjct: 148 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPKVE 204 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 205 SSVVR-IEIKNPRP 217 >gi|28210013|ref|NP_780957.1| dimethyladenosine transferase [Clostridium tetani E88] gi|28202448|gb|AAO34894.1| dimethyladenosine transferase [Clostridium tetani E88] Length = 136 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEVGER++A+ + YG LS+L + ++ +SP F P PKV S +I Sbjct: 1 MIQKEVGERMSAKPKAKEYGSLSLLVQYYCDINIIRRVSPSSFIPRPKVDSVIIKLDKLQ 60 Query: 213 NPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENL 264 P E KI + AF RRKT+ +K L E + I+ R E L Sbjct: 61 KPRVSVKDEELFFKIIRSAFNMRRKTMWNVIKSLSNLDKEIIEKAFRVSNIDPKRRGETL 120 Query: 265 SIEDFCRITNILTDN 279 S+E+F IL+D+ Sbjct: 121 SVEEFA----ILSDS 131 >gi|168705823|ref|ZP_02738100.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246] Length = 165 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 13/167 (7%) Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T L+ N + P E + ++ Q E+ ER+ A N+ Y LSVL Sbjct: 1 KLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQ 57 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237 + ++P F P PKV S ++ P+ + +K ++ + RRK L Sbjct: 58 SVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNL 117 Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RQ+L ++ + L + GI+ LR+E L IE R+ + Sbjct: 118 RQALVGWPTGPREKKDVDAKLAELGIDGTLRSEALDIEQHLRLAAVF 164 >gi|213581623|ref|ZP_03363449.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 152 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPI 119 + +G R K+ VIE D+ L+ P +L I Q DA+ ++F E + P+ Sbjct: 53 E---PVGERLDKLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMTMNFGELSAQLGQPL 108 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 R+ NLPYNI T L+F+ S + + + QKEV R+ A Sbjct: 109 RVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVA 150 >gi|309798998|ref|ZP_07693255.1| dimethyladenosine transferase [Streptococcus infantis SK1302] gi|308117402|gb|EFO54821.1| dimethyladenosine transferase [Streptococcus infantis SK1302] Length = 140 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEV +RI+A+ N+ YG LS+ + A + F + VF P+P V S ++ + Sbjct: 1 MMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRLP 60 Query: 213 NPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRA 261 P + K+++ +F RRKTL +L G+ L QAG+ ++R Sbjct: 61 EPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRG 120 Query: 262 ENLSIEDFCRITNIL 276 E L +E+F + + L Sbjct: 121 EALGLEEFASLADAL 135 >gi|289618785|emb|CBI54610.1| unnamed protein product [Sordaria macrospora] Length = 401 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 13/219 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I I + + V+EIG G GN+T L A+KVI I+ D + Sbjct: 41 KDYGQHILKNPGISDAIVDKAFLKPTDVVVEIGPGTGNITVRALE-KAKKVIAIDIDPRM 99 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P +LE+I D +K+ + +I+N PY I + L+F ++ Sbjct: 100 GAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAM 154 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P L+FQ+E +R+ A+ Y RLSV + + + F P PK Sbjct: 155 PNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPK 211 Query: 201 VTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTL 237 V S V+ P + E + + AF ++ KTL Sbjct: 212 VESDVVRIEPLIGSARPNIAFEEFDGLLRIAFNRKNKTL 250 >gi|330719898|gb|EGG98373.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047] Length = 155 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D NI++ I S + EIG G G +T+ LL + V+E D+ Sbjct: 10 RKRFGQNFLQDQNIIRNILLSINPKADDNIAEIGPGLGAITEHLLKATNGHLNVVEIDRD 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLF 135 +LK +P L I Q DALK DF + + + +RI+ NLPYNI T L+F Sbjct: 70 LVQVLKTQFFNYP-ELNIHQGDALKFDFSQLVASDQSDTQKLRIVGNLPYNISTPLIF 126 >gi|168705804|ref|ZP_02738081.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246] Length = 208 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 13/167 (7%) Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T L+ N + P E + ++ Q E+ ER+ A N+ Y LSVL Sbjct: 44 KLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQ 100 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237 + ++P F P PKV S ++ P+ + +K ++ + RRK L Sbjct: 101 SVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNL 160 Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RQ+L ++ + L + GI+ LR+E L IE R+ + Sbjct: 161 RQALVGWPTGPREKKDVDAKLAELGIDGTLRSEALDIEQHLRLAAVF 207 >gi|50293399|ref|XP_449111.1| hypothetical protein [Candida glabrata CBS 138] gi|52782776|sp|Q6FKY3|DIM1_CANGA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49528424|emb|CAG62081.1| unnamed protein product [Candida glabrata] Length = 317 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E D + Sbjct: 34 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F+I I+N PY I + L+F I+ Sbjct: 93 ELTKRVHGTPAEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 146 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 147 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFRPPPQVE 203 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 204 SSVVR-IEIKNPRP 216 >gi|156838911|ref|XP_001643153.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM 70294] gi|156113749|gb|EDO15295.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM 70294] Length = 319 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E D + Sbjct: 35 LGQHILKNPLVAQGIVDKANIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 93 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F+I I+N PY I + L+F I+ Sbjct: 94 ELTKRVHGTPAEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 147 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 148 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFRPPPQVE 204 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 205 SSVVR-IEIKNPRP 217 >gi|290559679|gb|EFD93005.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 262 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 19/187 (10%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL D ++ KI ++S ++EIG+G G LT+ + TL +KV IE D + + Sbjct: 7 FLKDESVFNKIIKASELKKDDIILEIGSGDGRLTKRIATL-VKKVYAIEIDTNLYDSART 65 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTW 143 + + +E I DAL ++F + N +II+NLPY I + + I D + Sbjct: 66 LVEN--DNIEFINADALSIEFPENAN-----KIISNLPYAISSPITEKIIYFLNKKRDGF 118 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 L++Q E G R+ A Y +SV + + ++S + F P P V S Sbjct: 119 A------VLMYQLEFGNRMLAFPGIRDYSMISVFAQYTCDVKHISNVSKNSFRPKPAVES 172 Query: 204 TVIHFIP 210 ++ IP Sbjct: 173 IILKLIP 179 >gi|260943356|ref|XP_002615976.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720] gi|238849625|gb|EEQ39089.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720] Length = 322 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 12/185 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E D + Sbjct: 34 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 92 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K D +F++ I+N PY I + L+F ++ Sbjct: 93 ELTKRVHGTPQQKKLEILLGDFMKTDLP-YFDVC-----ISNTPYQISSPLVFKLLNQPK 146 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 147 PP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 203 Query: 203 STVIH 207 S+V+ Sbjct: 204 SSVVR 208 >gi|153006650|ref|YP_001380975.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5] gi|152030223|gb|ABS27991.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5] Length = 356 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 4/101 (3%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + +L Y + KK GQNFL D IL IA + G V+E+GAG G+LT LL Sbjct: 14 SPRALLDKYGLRAKKSWGQNFLGDEAILDDIARLAAPRPGDPVVELGAGLGHLTARLLAR 73 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 GA +VI +E+D+ +L+ + +RL +++ DA ++D+ Sbjct: 74 GA-EVIAVERDRDMVRVLR---GELGDRLRLLEADAARLDY 110 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 12/167 (7%) Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I ++ NLPY++ + +LF+ + L Q+EV ER+ A S +G SVL Sbjct: 191 IAVVGNLPYHLTSPILFSLLDQLE---HVSRAVFLLQREVAERLAAPPGSRDWGVASVLL 247 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRK 235 ++ + F P P V S V+ I P +++ + F +RRK Sbjct: 248 QREADVSVERIVPSGAFVPPPNVDSAVLCAIFRPPGEGLAVADPGRFRRLVKAGFAQRRK 307 Query: 236 TLRQSL---KRLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L K + E L L AG++ R E L++E++ + L Sbjct: 308 TLGNALRAGKVVPEEALSRALQAAGLDPGRRGETLTVEEWAALDRAL 354 >gi|118575664|ref|YP_875407.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum symbiosum A] gi|118194185|gb|ABK77103.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum symbiosum A] Length = 221 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 22/213 (10%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 ++IA+S+G G TV+E+G G G LT+ L GAR +I +E++ + + + +S H Sbjct: 8 RRIADSAGISPGDTVLEVGTGLGALTRELCGRGAR-IISVERNGRLYG--EASASLHCEG 64 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 LE+ + D V E F++ ++NLPY+ +R W+ F + + QK Sbjct: 65 LELRRGDGFAV--EDGFDV-----FVSNLPYSQ-SRRAVEWL---VQRDFARGIVTV-QK 112 Query: 157 EVGERITAQKNSPHYGR-LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 E ++ + P R + VL G + ++F ++ F P P+V S V+ + I Sbjct: 113 EFAAKL--MEADPRRRRAIGVLAGHCFEMRVLFPVARSCFDPPPRVDSVVVE-LAKRRTI 169 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P + + F RRKT+R +K+ G E Sbjct: 170 P---GGVVRAVNGIFSYRRKTMRGIMKQFGREG 199 >gi|124028496|ref|YP_001013816.1| dimethyladenosine transferase [Hyperthermus butylicus DSM 5456] gi|123979190|gb|ABM81471.1| Dimethyladenosine transferase [Hyperthermus butylicus DSM 5456] Length = 251 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 30/268 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQ+FL+ + + A + ++E+G G G LT +L + ++ +E D + Sbjct: 5 RRELGQHFLVARWVARIFAGWACRFR--RLLEVGVGQGFLTSTILRSCSVEIAGLELDLR 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L IS + +I D E + + ++PYNI LL + Sbjct: 63 LVGELASISFYFTGFMPVIADAV-----EPPLRLGGVDAVYGSIPYNITGPLLSLLVVEA 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS------PHVF 195 P LL Q+EV +R+ A+ + YGR++VL +++D+ P F Sbjct: 118 RKPAL-----LLLQREVVDRLAAKPGTASYGRITVLV------RLVYDVKPGPVVPPSAF 166 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ +P + P P L ++++T+ F +R K + + G L G Sbjct: 167 RPRPKVYSRIVELVPRPDAPSPDMLRRVEELTKCMFSERNKRAAKVAAKCIGIELSKIEG 226 Query: 255 -IETNLRAENLSIEDFCRITNILTDNQD 281 + ++R L E F + L D+Q+ Sbjct: 227 LVGRDIRVYQLEPEKFIQ----LLDSQN 250 >gi|269986492|gb|EEZ92777.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 264 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 18/187 (9%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL D + +KI ++S VIEIG+G G LT+ + +KV IE D F + Sbjct: 7 FLRDEKVFQKIIQASDLNSEDVVIEIGSGDGRLTKHIAPY-VKKVYAIELDTNLFDSART 65 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTW 143 + + N +E I DAL ++F N +II+NLPY I + + I D Sbjct: 66 LLEDNKN-IEFINGDALDLEFPDDAN-----KIISNLPYAISSPITEKIIYFLNNKKDGL 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 L++Q E GER+ A Y +SV T + ++ +S + F P P V S Sbjct: 120 A------VLMYQLEFGERMLAFPGIRDYSMISVFTQYTCNIKLVSMVSKNAFRPRPAVES 173 Query: 204 TVIHFIP 210 ++ P Sbjct: 174 ILLKVTP 180 >gi|146414153|ref|XP_001483047.1| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260] Length = 497 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI E D + Sbjct: 213 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 271 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K D +F++ I+N PY I + L+F ++ Sbjct: 272 ELTKRVHGTPQQKKLEILLGDFIKTDLP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 325 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 326 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 382 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 383 SSVVR-IEIKNPRP 395 >gi|159041898|ref|YP_001541150.1| ribosomal RNA adenine methylase transferase [Caldivirga maquilingensis IC-167] gi|157920733|gb|ABW02160.1| ribosomal RNA adenine methylase transferase [Caldivirga maquilingensis IC-167] Length = 273 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 24/259 (9%) Query: 28 NFLLD---LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +F++D LN + ++A+ V+E+G G LT L A+ V + + Sbjct: 34 HFMVDPVYLNTIAQLAKDE------KVLEVGFGLSYLTHYLAKY-AQHVFACDVNPMMIK 86 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +K I N ++ DAL + + +++N+PY+I T L + D Sbjct: 87 AIKAIGLSEVNA-DLFICDALT------YKPPIELTVVSNIPYSI-TSRLLLRLLTDYGA 138 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 L L Q+EV R+ A+ S YGRLSV+T + ++ + P F+P PKV S Sbjct: 139 ---RKLILTLQREVALRLAAKPGSTDYGRLSVITQCLSLVKVIKHVPPWAFWPRPKVYSA 195 Query: 205 VIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 ++ P P PC + +L+ +T + F + K + +K+ G N R Sbjct: 196 IVELKPL--PKPCVDVRALESLTSKLFTQPNKKAIKVIKQFYGLREGEAPSYLLNKRVRE 253 Query: 264 LSIEDFCRITNILTDNQDI 282 LS+ + + N+L + I Sbjct: 254 LSVNEVAELVNVLINMGKI 272 >gi|190348449|gb|EDK40904.2| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260] Length = 497 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI E D + Sbjct: 213 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 271 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K D +F++ I+N PY I + L+F ++ Sbjct: 272 ELTKRVHGTPQQKKLEILLGDFIKTDLP-YFDV-----CISNTPYQISSPLVFKLLNQPR 325 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 326 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 382 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 383 SSVVR-IEIKNPRP 395 >gi|221122621|ref|XP_002168090.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 479 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 9/143 (6%) Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 N+L +I D LK + +F+ +ANLPY I + +F + PF+ L+F Sbjct: 4 NKLHLIVGDVLKSEL-PYFDCC-----VANLPYQISSPFVFKLL---LHRPFFRCAVLMF 54 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 Q+E +R+ A+ Y RLS+ T + + + + F P PKV S+V+ P P Sbjct: 55 QREFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP 114 Query: 215 IPCCLESLKKITQEAFGKRRKTL 237 P + + + AF ++ KTL Sbjct: 115 PPINFQEWDGLVRIAFVRKNKTL 137 >gi|255712883|ref|XP_002552724.1| KLTH0C11704p [Lachancea thermotolerans] gi|238934103|emb|CAR22286.1| KLTH0C11704p [Lachancea thermotolerans] Length = 322 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 12/186 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI +E D + Sbjct: 35 LGQHILKNPLVAQGIVDKAQIKPSDVVLEVGPGTGNLTVRILE-QARKVIAVEMDPRMGA 93 Query: 85 IL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L + + +L+I+ D +K D +F+I I+N PY I + L+F I+ Sbjct: 94 ELTKRVHGTAGEKKLDILLGDFMKTDLP-YFDIC-----ISNTPYQISSPLVFKLINQPK 147 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 148 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 204 Query: 203 STVIHF 208 S+V+ Sbjct: 205 SSVVRL 210 >gi|290559283|gb|EFD92620.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 262 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 31/219 (14%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFF 83 GQNFL+D N+L+ + + T+++IGAG G++ T ++K VI IE+D + + Sbjct: 24 GQNFLVDENVLEIEINEAHLVSEDTILDIGAGFGSIE----TKASKKCHVIAIERDIKCY 79 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L D + N ++I+ DAL + + +F +I++N PYNI R+ I + Sbjct: 80 SYLIDKYEINAN-IQIVNADALNMIYPEF------TKIVSNPPYNIADRI----IEKISH 128 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 F +S+ +L + E + Q ++ S + + + ++ FFP P+VTS Sbjct: 129 YNFADSIMILPKTMADELCSIQSHTS----FSAINKLFMEFYKIMEVERTSFFPEPRVTS 184 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ N I Q+ F +R TL+ +++ Sbjct: 185 VMVRIKKKEN----------NILQDTFRRREMTLKNAIR 213 >gi|325120439|emb|CBZ55993.1| putative dimethyladenosine transferase [Neospora caninum Liverpool] Length = 367 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 23/224 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQ+ L + +L KI +++ TV+EIG G GNLT LL + AR+V+ ++ D + Sbjct: 52 QKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALDVDAR 110 Query: 82 FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +K IS+ N L + DAL+ D F P++ Sbjct: 111 MVSEVKKRAISNGFMN-LVVRHGDALRSDLGTFDAQQPPLQ------------------E 151 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 DT L+FQKE GER+ AQ +Y RL+ + + F P P Sbjct: 152 RDT-STVTRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVEAKHFTPPP 210 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 KV S V+ +P N + + + + FG++ +TL +R Sbjct: 211 KVDSVVVKVVPRPNLLDVDFKEWDGLMRICFGRKNRTLHALFRR 254 >gi|134097339|ref|YP_001103000.1| N-6-aminoadenine-N-methyltransferase,erythromycin resistance [Saccharopolyspora erythraea NRRL 2338] gi|291009285|ref|ZP_06567258.1| rRNA (adenine-N(6)-)-methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|150421549|sp|P07287|ERME_SACEN RecName: Full=rRNA adenine N-6-methyltransferase; Short=NMT; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|6224590|emb|CAB60001.1| N-6-aminoadenine-N-methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909962|emb|CAM00074.1| N-6-aminoadenine-N-methyltransferase,erythromycinresistance [Saccharopolyspora erythraea NRRL 2338] Length = 381 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 29/218 (13%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S HPN +E++ D L + P + +PY I T + +W Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAE-----PPPEPFAFVGAIPYGI-TSAIVDWCLE- 146 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-------GWRTKATMMFDISPHV 194 P E+ T++ Q E A+K + YGR S LT W + + + Sbjct: 147 --APTIETATMVTQLEF-----ARKRTGDYGRWSRLTVMTWPLFEW----EFVEKVDRRL 195 Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230 F P PKV S ++ P+ LE + + + F Sbjct: 196 FKPVPKVDSAIMRLRRRAEPLLEGAALERYESMVELCF 233 >gi|116330394|ref|YP_800112.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124083|gb|ABJ75354.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 301 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 44/299 (14%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGIT-VIEIGAGPGNLT 62 K ++ L P K GQNFL+D N ++ I SS L I ++EIG G G ++ Sbjct: 10 KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + V + E D P+ ++ EI + +AL DF ++ +S + Sbjct: 70 HGLLDF-QKPVTLFEID----PVYAHWLREYLPEFEIREGNAL--DFLHEYSQNS-TYLF 121 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPY I + L + + + L QKE +RI+++ +S + LS W Sbjct: 122 GNLPYYISSELTLSSVKNLKE---LKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNWSL 177 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 K D+ F+P P V S+++ + P + +L+ + + AF +RK L S Sbjct: 178 KK----DVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232 Query: 241 LKR----------LGGENL------------LHQAGIETNLRAENLSIEDFCRITNILT 277 L+ + EN L AGI+ N R E L DF L+ Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFYEAAQSLS 291 >gi|254583294|ref|XP_002497215.1| ZYRO0F00308p [Zygosaccharomyces rouxii] gi|238940108|emb|CAR28282.1| ZYRO0F00308p [Zygosaccharomyces rouxii] Length = 319 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+E+G G GNLT +L RK +E D + Sbjct: 35 LGQHILKNPLVAQGIVDKAQLRPSDTVLEVGPGTGNLTVRILE-QVRKAYAVEMDPRMAA 93 Query: 85 IL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L K + R LEI+ D +K D +F++ I+N PY I + L+F I+ Sbjct: 94 ELTKRVRGTDGERKLEILLGDFIKTDLP-YFDVC-----ISNTPYQISSPLVFKLINQPR 147 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS + +S + F P P+V Sbjct: 148 PP---RVAVLMFQREFAMRLVARPGDALYCRLSANVQMWANVVHIMKVSKNNFRPPPQVE 204 Query: 203 STVIHF 208 S+V+ Sbjct: 205 SSVVRL 210 >gi|34394642|dbj|BAC83949.1| Ribosomal RNA adenine dimethylase-like protein [Oryza sativa Japonica Group] Length = 261 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 9/143 (6%) Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 ++L +I+ DA++ +F +F ++ +AN+PY I + L+ + P + + TLL Sbjct: 16 HKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAKLL---FGPYRFRAATLLL 66 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 QKE R+ A Y RL+ A ++ D+S F P PKV S+++ P Sbjct: 67 QKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFVPMPKVDSSLVEIRPRAAE 126 Query: 215 IPCCLESLKKITQEAFGKRRKTL 237 L T+ FG++ KTL Sbjct: 127 PNVDLAEWLAFTRSCFGQKNKTL 149 >gi|238593367|ref|XP_002393175.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553] gi|215460264|gb|EEB94105.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553] Length = 228 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 9/142 (6%) Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 RLEI+ D +K D +F++ I+N PY I + L+F +S P L+FQ Sbjct: 21 RLEIMIGDFVKADL-PYFDVC-----ISNTPYQISSPLIFRLLSQRPLP---RICILMFQ 71 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 +E R+ A+ S + RLS K + + + F P PKV S+V+ P P Sbjct: 72 REFALRLIAKAGSELWSRLSANVQLYAKVDYLMHVGKNNFRPPPKVESSVVRIAPRDPPP 131 Query: 216 PCCLESLKKITQEAFGKRRKTL 237 P E + + F +R KT+ Sbjct: 132 PVKFEEFDGLGRIVFSRRNKTI 153 >gi|213406479|ref|XP_002174011.1| dimethyladenosine transferase [Schizosaccharomyces japonicus yFS275] gi|212002058|gb|EEB07718.1| dimethyladenosine transferase [Schizosaccharomyces japonicus yFS275] Length = 307 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + + + I + S TV+E+G G GNLT +L +KV +E D + Sbjct: 26 KDFGQHILKNPLVAQGIVDKSDLKQSDTVLEVGPGTGNLTVRILE-KVKKVTAVEMDPRM 84 Query: 83 FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L P +L I+ D +K + +F++ I+N PY I + L+F + Sbjct: 85 AAELTKRVQGTPQEKKLNILLGDVIKTELP-YFDVC-----ISNTPYQISSPLVFKLLKH 138 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P L+FQ+E R+ A+ P Y RLS + + + F P P+ Sbjct: 139 RPAPRL---AVLMFQREFALRLVAKPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPQ 195 Query: 201 VTSTVI 206 V S+V+ Sbjct: 196 VESSVV 201 >gi|332969210|gb|EGK08240.1| rRNA (adenine-N(6)-)-methyltransferase [Desmospora sp. 8437] Length = 283 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 18/186 (9%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + GQ+ + + ++K++ + S V+EIGAG GNLT M L ++KV+ +E D F Sbjct: 26 FPGQHLMHNKGLIKELVKISEVNRQDLVLEIGAGTGNLT-MPLAEKSKKVLAVENDPVFA 84 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ N +E+IQ D L+++ + P ++AN+PY+I T +L T Sbjct: 85 ERLQRKIESVSN-IEVIQQDFLQMNLPRV-----PFSVVANIPYSITTPILGKLFDRPTV 138 Query: 144 PPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRT--KATMMFDISPHVFFPSPK 200 P L+ +K +R TA +P + WR + M I PH F P P+ Sbjct: 139 P--IRRAVLVMEKGAAKRFTADPITNPR------ILKWRMWFEMKMGRTIPPHHFSPPPR 190 Query: 201 VTSTVI 206 V S ++ Sbjct: 191 VDSAIL 196 >gi|54024690|ref|YP_118932.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia farcinica IFM 10152] gi|54016198|dbj|BAD57568.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia farcinica IFM 10152] Length = 269 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 19/192 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNFL D +I ++I S+G G V+EIG G G LT LL + R V+ E D ++ L Sbjct: 19 QNFLADADIARRIVRSAGVGAGDLVLEIGPGDGMLTAQLLGVAGR-VLAYEIDARYAARL 77 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + + P R+ DF P ++AN+P+ T ++ ++A Sbjct: 78 QARYAHDP-RIHCYHK-----DFRDAPLPDEPFGVVANVPFGSTTDIVRWCLAARQ---- 127 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF---DISPHVFFPSPKVTS 203 S TLL Q+E A+K++ YGR S LT T M I F P P+V Sbjct: 128 LTSATLLTQREF-----ARKHTGDYGRWSKLTVTHWPTTTMHLGARIDRRHFRPVPRVDG 182 Query: 204 TVIHFIPHLNPI 215 ++H +P+ Sbjct: 183 ALLHLRRRPDPL 194 >gi|116328998|ref|YP_798718.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121742|gb|ABJ79785.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 301 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 44/299 (14%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGIT-VIEIGAGPGNLT 62 K ++ L P K GQNFL+D N ++ I SS L I ++EIG G G ++ Sbjct: 10 KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + V + E D P+ ++ EI + +AL DF ++ +S + Sbjct: 70 HGLLDF-QKPVTLFEID----PVYAHWLREYLPEFEIREGNAL--DFLHEYSQNS-TYLF 121 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPY I + L + + + L QKE +RI+++ +S + LS W Sbjct: 122 GNLPYYISSELTLSSVKNLKE---LKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNWSL 177 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 K D+ F+P P V S+++ + P + +L+ + + AF +RK L S Sbjct: 178 KK----DVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232 Query: 241 LKR----------LGGENL------------LHQAGIETNLRAENLSIEDFCRITNILT 277 L+ + EN L AGI+ N R E L DF L+ Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFHEAAQSLS 291 >gi|45656257|ref|YP_000343.1| dimethyladenosine transferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294827644|ref|NP_710586.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai str. 56601] gi|45599491|gb|AAS68980.1| dimethyladenosine transferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385487|gb|AAN47604.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai str. 56601] Length = 301 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 127/300 (42%), Gaps = 46/300 (15%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT----VIEIGAGPGNL 61 K ++ L P K GQNFL+D N ++ I + + D ++ ++EIG G G + Sbjct: 10 KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILDCL-NFDLLSTIDRILEIGPGLGAI 68 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 + LL + V + E D PI + ++ E+ + +AL DF ++ S + Sbjct: 69 SHGLLDF-KKPVTLFEID----PIYSNWLREYLPEFELKEGNAL--DFLSEYSQDS-TYL 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPY I + L N + + T L QKE +RI+A+ +S + LS W Sbjct: 121 FGNLPYYISSELTLNSVKNLKG---LKGATFLVQKEFAKRISAEPSSIQF-YLSAYGNWS 176 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 K DI F+P P V S+++ + +P + +L+ I + AF +RK L Sbjct: 177 LKK----DIKAGAFYPKPNVDSSILEYKSLPVFKNESGFI-ALECICRTAFWGKRKKLTS 231 Query: 240 SLKRLGGENL----------------------LHQAGIETNLRAENLSIEDFCRITNILT 277 S + E+L L I+ + R E L +DF IL+ Sbjct: 232 SFRDAPIESLPLEVYSSENFSEKTFRTECLKALKSVNIDLDKRPEELKSKDFHEAAKILS 291 >gi|329766403|ref|ZP_08257949.1| ribosomal RNA adenine methylase transferase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137172|gb|EGG41462.1| ribosomal RNA adenine methylase transferase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 235 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 21/235 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +I +K +GQ+FL I + I + V E+G G G LT LL A+KVI I+ Sbjct: 1 MIKRKRLGQHFLTSNTIAQSIVSEANISGNDIVFELGTGLGILTP-LLCEKAKKVISIDA 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNW 137 D++ + K +R I D L V+F F I ++NLPY+ ++ W Sbjct: 60 DRELYENAK-------SRFSHI--DNLTVEFGDGFQKQDKFSIFVSNLPYS-KSKEAIEW 109 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ PF + ++ QKE E++ K++ + +S++ + + ++ + F P Sbjct: 110 LAI---TPFSHGI-IMVQKEFAEKLLT-KSTKNRRSVSIIANYVFEIEKFLNVGKNNFSP 164 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S V+ + + L K+ F RRKT++ K+ G E L+ + Sbjct: 165 PPKVDSVVLKITKKKSIEKDIINVLNKM----FSYRRKTIQNIFKQFGKETLMDK 215 >gi|45185713|ref|NP_983429.1| ACR026Wp [Ashbya gossypii ATCC 10895] gi|52782780|sp|Q75C90|DIM1_ASHGO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|44981468|gb|AAS51253.1| ACR026Wp [Ashbya gossypii ATCC 10895] Length = 319 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 12/185 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E D + Sbjct: 34 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEFDPRMAA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F+I I+N PY I + L+F I+ Sbjct: 93 ELTKRVHGTPAEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 146 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 147 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHVMKVGRNNFRPPPQVE 203 Query: 203 STVIH 207 S+V+ Sbjct: 204 SSVVR 208 >gi|730032|sp|Q04720|ERMJ_BACAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143198|gb|AAA22597.1| rRNA methyltransferase [Bacillus anthracis] Length = 287 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 36/195 (18%) Query: 24 YMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 + GQ+ + + ++++I + + S+D TV+E+GAG G LT +L+ A KV+ +E D +F Sbjct: 21 FSGQHLMHNKKLIEEIVDRANISIDD-TVLELGAGKGALT-TVLSQKAGKVLAVENDSKF 78 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGT---RLLFNW 137 IL ++QH N +II D +K+ EKF +++N+PY I T ++L N Sbjct: 79 VDILTRKTAQHSN-TKIIHQDIMKIHLPKEKFV-------VVSNIPYAITTPIMKMLLNN 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------IS 191 ++ ++ ++ +K +R T++ + + S + WR M FD IS Sbjct: 131 PASG-----FQKGIIVMEKGAAKRFTSK-----FIKNSYVLAWR----MWFDIGIVREIS 176 Query: 192 PHVFFPSPKVTSTVI 206 F P PKV S ++ Sbjct: 177 KEHFSPPPKVDSAMV 191 >gi|1169552|sp|Q03986|ERMD_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143201|gb|AAA22599.1| macrolide-lincosamide-streptogramin B resistance methylase [Bacillus licheniformis] Length = 287 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 36/195 (18%) Query: 24 YMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 + GQ+ + + ++++I + + S+D TV+E+GAG G LT +L+ A KV+ +E D +F Sbjct: 21 FSGQHLMHNKKLIEEIVDRANISIDD-TVLELGAGKGALT-TVLSQKAGKVLAVENDSKF 78 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGT---RLLFNW 137 IL ++QH N +II D +K+ EKF +++N+PY I T ++L N Sbjct: 79 VDILTRKTAQHSN-TKIIHQDIMKIHLPKEKFV-------VVSNIPYAITTPIMKMLLNN 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------IS 191 ++ ++ ++ +K +R T++ + + S + WR M FD IS Sbjct: 131 PASG-----FQKGIIVMEKGAAKRFTSK-----FIKNSYVLAWR----MWFDIGIVREIS 176 Query: 192 PHVFFPSPKVTSTVI 206 F P PKV S ++ Sbjct: 177 KEHFSPPPKVDSAMV 191 >gi|320590414|gb|EFX02857.1| dimethyladenosine transferase [Grosmannia clavigera kw1407] Length = 318 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNIS 116 GN+T +L ARK I IE D + + P +LE++ DA+K +F F ++ Sbjct: 55 GNITTRILE-KARKCIAIELDPRMAAEVTKRVQGGPLQKKLEVLLGDAIKTEFPPF-DV- 111 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I+N PY I + L+F +S P + L+FQKE +R+ A+ Y RLSV Sbjct: 112 ----CISNTPYQISSPLVFKLLSLPNPP---RTAVLMFQKEFAQRLVARPGDTLYCRLSV 164 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234 + + + + F P P+V S V+ P + + + AF ++ Sbjct: 165 NAQFFARIAHVLKVGKANFNPPPQVESAVVRITPKTGSERPKFNFSEMDGMLRVAFNRKN 224 Query: 235 KTLRQSL 241 +T+R S Sbjct: 225 RTMRASF 231 >gi|261886276|ref|ZP_06010315.1| dimethyladenosine transferase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 168 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%) Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY + T ++ I + L ++ Q+EV + +++ + L++LT Sbjct: 1 MVANLPYYVATNMILKAIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWL 56 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239 + K ++FD+ F P PKV S+VI I + + ++ K + AF RKTL + Sbjct: 57 KGKCELLFDVPSSAFNPPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLK 116 Query: 240 SLKRLGGENLLHQAGIETNLRAENLS 265 +L NL+ + +E ENLS Sbjct: 117 NL-----SNLVQRDRLEIFFNTENLS 137 >gi|330721180|gb|EGG99294.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047] Length = 112 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRR 234 + + + +F + P F P PKV S ++ P+ P IP + L + AF +RR Sbjct: 1 MVQYHCQVESLFKVPPTAFDPQPKVDSAIVRLTPYDKPPIPALDHKQLSSVVTTAFNQRR 60 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R +LK+L L GI+ LR E L++++F I++ LT Sbjct: 61 KTIRNNLKKLISTEQLEALGIDPGLRPEKLTLQNFVAISDTLT 103 >gi|269986904|gb|EEZ93180.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 263 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 31/218 (14%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFF 83 GQNFL+D ++L + E++ V++IGAG G++ ++ ++K +I IEK+ + + Sbjct: 24 GQNFLVDEDVLAEEIENAKLEPSDIVLDIGAGFGSIESVV----SKKCHIIAIEKEIKCY 79 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L D PN ++II DAL++ + KF +II+N PYNI R++ S D + Sbjct: 80 SYLIDKYEIDPN-VQIINADALEMIYPKFN------KIISNPPYNITDRIIDKLSSYDFY 132 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 S ++ + +++ + KN + + + + T ++ F+P P+VTS Sbjct: 133 -----SGVMIIPNTISKQLLSDKNETKFSSIEKIFFKFEEIT---EVKKESFYPVPRVTS 184 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 +I N I QE F +R L+ + Sbjct: 185 RMIKITKKKND----------IFQEIFRRREMLLKNAF 212 >gi|153824301|ref|ZP_01976968.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Vibrio cholerae B33] gi|126518177|gb|EAZ75402.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Vibrio cholerae B33] Length = 108 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237 + K + ++ P F P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+ Sbjct: 2 YYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTV 61 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 R K L L GI +R ENL++ F + N L Sbjct: 62 RNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 100 >gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa] gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa] Length = 210 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 16/153 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQ+++L+ I +++ S+ +G ++EIG G G+LT +L+ GA V+ IEKD Sbjct: 42 PRKSLGQHYMLNDEINEQLVASANVEEGDLILEIGPGTGSLTNVLIDAGA-TVLAIEKDA 100 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVD--------FEKFFNISSPIR---IIANLPYNI 129 ++++ + NR +++Q+D +K E ++S R ++AN+P+NI Sbjct: 101 HMAALVRERFAD-TNRFKVLQEDFIKCHIRSHMLSMLESMGSLSEKPRYAKVVANIPFNI 159 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 T ++ + T F E + LL Q E R+ Sbjct: 160 STDVIKQLLP--TGDIFSE-IVLLLQDETALRL 189 >gi|18390036|gb|AAL68827.1|AF462611_2 23S ribosomal RNA methyltransferase ErmML [Micrococcus luteus] Length = 281 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 34/262 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D + +++ G G ++EIG G G LT+ L LG R + +E D + Sbjct: 12 GQNFLTDHTTIDRLSRLVGDSTG-PIVEIGPGQGRLTRELQKLG-RSLTAVEIDSRLADR 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L S + + + DF + ++P ++ N+P+++ T +L + Sbjct: 70 LASASQFREQKHVTV----VNADFLHWPLPTTPYVVVGNVPFHLTTAILRRLLHDGA--- 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH------VFFPSP 199 W + LL Q EV R G S++T + D S H F P+P Sbjct: 123 -WTQVVLLVQWEVARRRAG------IGGSSMMT---AQWWPWIDFSLHGRVPRSAFKPAP 172 Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ-------SLKRLGGENLL 250 V ++ +P+ P ES ++ + F R + + + SL + G LL Sbjct: 173 SVDGGLLEMTRRPDPLLSPDARESYRQFVHDVFTSRGRGIGEILANVSSSLGKRGALQLL 232 Query: 251 HQAGIETNLRAENLSIEDFCRI 272 GI ++ ++LS E + R+ Sbjct: 233 KSEGIRSSSLPKDLSAEQWARL 254 >gi|15612943|ref|NP_241246.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125] gi|5822819|dbj|BAA83962.1| ERMK [Bacillus halodurans] gi|10172993|dbj|BAB04099.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125] Length = 284 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 32/205 (15%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P + GQ+ + + +L++I + + TV+E+GAG G LT L+ A++V+ +E DQ Sbjct: 18 PPNFSGQHLMHNKKLLQEIVDQAKVSKKDTVLELGAGKGALT-TFLSERAKRVLAVEYDQ 76 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFN 136 F +L + H II +D +++ K +++N+PY+I T +LL N Sbjct: 77 TFIQVL-NRKMAHAANTTIIHEDIMRIHLPK-----GEFVVVSNIPYSITTPIMKKLLSN 130 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------I 190 +S ++ ++ +K +R T SP VL WR M FD I Sbjct: 131 PVSG------FQRGVIVMEKGAAKRFT----SPFIKNAYVL-AWR----MWFDLEYVKGI 175 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI 215 S F P PKV S ++ +PI Sbjct: 176 SRECFSPPPKVDSAMVFISRKPDPI 200 >gi|294936255|ref|XP_002781681.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] gi|239892603|gb|EER13476.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] Length = 913 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVD 108 TV+E+G G GN++ L L A +V+ +E ++ + + + + +E++ D ++ Sbjct: 548 TVLEMGPGTGNMSVKLSEL-ANRVVAMEVNEGLAKEVERRAEMKGASNMEVVTGDFKRLA 606 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 +F +IANLPY++ T L + PF + +L Q E G+++ A Sbjct: 607 LPRF------DVVIANLPYHLATGFLLKLMGH----PFRTGIIML-QHEFGKKLLADPGE 655 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228 Y RLS+ KA + + FFP P+ TS +I P + + + Sbjct: 656 KIYSRLSLNMRMFFKAERICKVPGRAFFPQPQTTSVIIRLTPRVPAPKVDFAEWDAMIRI 715 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQ 252 AF ++ + + + KRL N+L Sbjct: 716 AFFRKNQDVFKMFKRLTVLNMLEH 739 >gi|38261101|ref|NP_940746.1| Erm(X) [Arcanobacterium pyogenes] gi|37993856|gb|AAR07014.1| Erm(X) [Arcanobacterium pyogenes] Length = 284 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 31/256 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTDHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAYLG-RAITAVEVDAKLAAK 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L +S +E++ D DF F ++P I+ N+P+++ T +L + A P Sbjct: 70 LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRTKATMMFD--ISPHVFFPSPKVT 202 W LL Q EV R G +++T W T + F P P V Sbjct: 119 AWTDAVLLMQWEVARRRAG------VGASTMMTAQWSPWFTFHLGSRVPRSAFRPQPNVD 172 Query: 203 STVIHFIPHLNP-IPC-CLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQA 253 ++ +P IP ++ + + F R + +R+ L+R G ++ LH Sbjct: 173 GGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIREILRRAGLFSSRSETQSWLHSR 232 Query: 254 GIETNLRAENLSIEDF 269 GI+ L D+ Sbjct: 233 GIDPATLPPRLHTSDW 248 >gi|307329006|ref|ZP_07608174.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger Tu 4113] gi|306885368|gb|EFN16386.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger Tu 4113] Length = 297 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 26/271 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M H L T + ++ GQNFL+D + ++ ++ G ++E+GAG G LT Sbjct: 1 MARNRHQLPTPRRTERDRARRAYGQNFLVDPGAVARVVRAARPGPGDLLVEVGAGKGVLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + L R++I E D+ P L++ +++P + ++ D L + P ++ Sbjct: 61 EALAPR-CRELISYEIDRHLIPGLRERLARYPQ-VRVVHQDFLDAAPPR-----EPFALV 113 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GW 180 N+PY ++ + A P S TLL Q E A+K + YGR S+LT W Sbjct: 114 GNVPYARTAEIVAWALRAA---PRLTSATLLTQAEY-----ARKRTGDYGRWSLLTVRSW 165 Query: 181 -RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKT 236 + + ++ F P P V ++ P+ P + + + F + Sbjct: 166 PEVEWRLCGRVARAAFRPVPAVDGGILRLTRRPRPLLTDPVARSAYADLVELGFTGLGGS 225 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIE 267 L SL+R+ L +A RA L E Sbjct: 226 LHASLRRICPARALDRA-----FRAAGLGRE 251 >gi|6324989|ref|NP_015057.1| Dim1p [Saccharomyces cerevisiae S288c] gi|1169344|sp|P41819|DIM1_YEAST RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|601876|gb|AAA57357.1| dimethyladenosine transferase [Saccharomyces cerevisiae] gi|1370549|emb|CAA98001.1| DIM1 [Saccharomyces cerevisiae] gi|151942536|gb|EDN60882.1| dimethyladenosine transferase [Saccharomyces cerevisiae YJM789] gi|190407700|gb|EDV10965.1| dimethyladenosine transferase [Saccharomyces cerevisiae RM11-1a] gi|256271159|gb|EEU06250.1| Dim1p [Saccharomyces cerevisiae JAY291] gi|259149891|emb|CAY86694.1| Dim1p [Saccharomyces cerevisiae EC1118] gi|285815278|tpg|DAA11170.1| TPA: Dim1p [Saccharomyces cerevisiae S288c] gi|323302623|gb|EGA56429.1| Dim1p [Saccharomyces cerevisiae FostersB] gi|323306894|gb|EGA60178.1| Dim1p [Saccharomyces cerevisiae FostersO] gi|323331103|gb|EGA72521.1| Dim1p [Saccharomyces cerevisiae AWRI796] gi|323335244|gb|EGA76533.1| Dim1p [Saccharomyces cerevisiae Vin13] gi|323346064|gb|EGA80354.1| Dim1p [Saccharomyces cerevisiae Lalvin QA23] gi|323351899|gb|EGA84438.1| Dim1p [Saccharomyces cerevisiae VL3] Length = 318 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+E+G G GNLT +L A+ V+ +E D + Sbjct: 34 LGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-QAKNVVAVEMDPRMAA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + +F+I I+N PY I + L+F I+ Sbjct: 93 ELTKRVRGTPVEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 146 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P P+V Sbjct: 147 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 203 Query: 203 STVIHF 208 S+V+ Sbjct: 204 SSVVRL 209 >gi|225680654|gb|EEH18938.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb03] Length = 291 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 19/178 (10%) Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 RLE++ D +K D +F++ I+N PY I + L F ++ + P L+FQ Sbjct: 17 RLEVLLGDVIKTDL-PYFDV-----CISNTPYQISSPLTFKLLATNPAP---RVCILMFQ 67 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 +E R+ A+ Y RLSV + + + + F P P V S+V+ +P NP Sbjct: 68 REFAMRLFAKPGDKLYNRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPK-NPR 126 Query: 216 P-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268 P + + + AF ++ KT+R S LG ++L +E+N R N+ +ED Sbjct: 127 PQISYDEWDGLLRIAFVRKNKTIRSSF--LGTTSVLDM--LESNYRTWCAQNNIPVED 180 >gi|242045760|ref|XP_002460751.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor] gi|241924128|gb|EER97272.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor] Length = 396 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 23/193 (11%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--- 79 K GQ+ L + +L I + G V+E+G G GNLT LL A V +E D Sbjct: 36 KRRGQHLLTNPRVLDAIVRRAAIRPGDAVLEVGPGTGNLTVRLLASPAASVAAVEIDPRM 95 Query: 80 -QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLL 134 +D+ H +L + DA+KVDF +F ++N+PY I + +LL Sbjct: 96 AAAVAARARDLGLAH--KLTVTTGDAMKVDFPEFDA------CVSNIPYAISSPLTAKLL 147 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + TLL Q+E R+ + L+ +++ D+S + Sbjct: 148 FGSYR-------FRTATLLVQREFARRLVGAPGHGEHNHLATNVRLVAHVSLLMDVSKND 200 Query: 195 FFPSPKVTSTVIH 207 F P P V S+++ Sbjct: 201 FVPVPGVDSSLVE 213 >gi|145611616|ref|XP_368993.2| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15] gi|145018882|gb|EDK03161.1| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15] Length = 364 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+ L + I ++I + + TV+E+G G GNL+ +L A+K+I +E D + Sbjct: 43 KKDYGQHILKNPGIAEEIVKKAYLRPTDTVLEVGPGTGNLSVKILER-AQKLIAVELDPR 101 Query: 82 FFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L P +LE+I D +K D F +I+N PY I + L+F ++ Sbjct: 102 MGAELTKRVQGKPEQRKLEVILGDVIKADLPPF------DVLISNTPYQISSPLVFKMLA 155 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 P + L+FQ+E R+TA+ Y RL Sbjct: 156 LPNPP---RCMVLMFQREFSSRLTARPGEALYSRL 187 >gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis thaliana gb|AF051326 and contains a Ribosomal RNA Adenine Dimethylases PF|00398 domain. This gene may be cut off Length = 239 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 22/169 (13%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 HS L+ P+K +GQ+++L+ +I ++A ++ +G V+EIG G G+LT +L+ Sbjct: 58 HSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLIN 117 Query: 68 LGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF-------NISS 117 LGA V+ IEKD P + D+ S+ ++ +++Q+D +K +S Sbjct: 118 LGA-TVLAIEKD----PHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172 Query: 118 P----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 P ++++NLP+NI T ++ + + + LL Q E R+ Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRL 218 >gi|16082608|ref|NP_394755.1| rRNA dimethyladenosine transferase [Thermoplasma acidophilum DSM 1728] Length = 239 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 32/259 (12%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 K MGQ FL ++IAE L G TV+EIG G G LT++L+ G K+ +EKD+ Sbjct: 5 KRMGQVFLQS----RRIAEYEVDLLGEPGTVLEIGPGHGVLTKILVERGF-KITAVEKDR 59 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 F L+ + + + L +I D L + S II N+PY+I + ++F Sbjct: 60 YIFGELQSLRAAN---LNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEF 110 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + ++ QKE E+I + RL V R + +S F P P+ Sbjct: 111 E-----FRRSVIMVQKEFAEKIAFPDDM---SRLYVNAHVRYNVELKRYVSRKNFNPQPE 162 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S ++ P LE L + + F K+RK L ++ + E+L + R Sbjct: 163 VDSAILVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKL-SNIFDICPEDL-------ADKR 214 Query: 261 AENLSIEDFCRITNILTDN 279 NL++ + + +L D+ Sbjct: 215 PSNLTVSEILGLARLLFDS 233 >gi|71028132|ref|XP_763709.1| hypothetical protein [Theileria parva strain Muguga] gi|68350663|gb|EAN31426.1| hypothetical protein TP04_0074 [Theileria parva] Length = 285 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%) Query: 107 VDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 +D+++ N + + II NLPY I +++L + + + + + Q EV ER+ A Sbjct: 1 MDYKELSNRVGRKLWIIGNLPYYITSQILMCLLD---YRKYIDRAVITAQLEVAERLVAP 57 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 S HY LSVL T+ ++F +S HVF+P PKV S I Sbjct: 58 VGSKHYSMLSVLIQMFTRPKILFKLSNHVFYPKPKVQSACIKL 100 >gi|260170953|ref|ZP_05757365.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D2] gi|265755244|ref|ZP_06090014.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA] gi|298482352|ref|ZP_07000538.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22] gi|315919274|ref|ZP_07915514.1| clindamycin resistance determinant [Bacteroides sp. D2] gi|317477408|ref|ZP_07936637.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] gi|325299659|ref|YP_004259576.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis DSM 18170] gi|263234386|gb|EEZ19976.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA] gi|298271331|gb|EFI12906.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22] gi|313693149|gb|EFS29984.1| clindamycin resistance determinant [Bacteroides sp. D2] gi|316906427|gb|EFV28152.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] gi|324319212|gb|ADY37103.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis DSM 18170] Length = 266 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + ++ F +++ Q E +++ ++K Y +V +++++ P FFP Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFFP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|224417853|ref|ZP_03655859.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491] gi|253827192|ref|ZP_04870077.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491] gi|253510598|gb|EES89257.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491] Length = 128 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 QKEV + A +N + LSVL +A M+F++ P F P PKVTS V F+ N Sbjct: 3 QKEVALKFCAIQNQSDFSALSVLAQSVGEAKMLFEVPPSAFVPQPKVTSAV--FLIEKNH 60 Query: 215 IPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENLSIED 268 IP L L+++ + AF RKTL +L ++ + L GI +N R + D Sbjct: 61 IPSSDFLVKLEELLKIAFSAPRKTLFNNLSKVYSKEKIMETLETLGIVSNKRPHEIDTTD 120 Query: 269 FCRITNIL 276 + R+ +L Sbjct: 121 YHRLLKLL 128 >gi|255548465|ref|XP_002515289.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223545769|gb|EEF47273.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 177 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + ++ I + SG ++EIG G GNLT+ LL G + V+++ + Sbjct: 26 KSKGQHILKNPLLVDTIVQKSGIKSTYVILEIGPGTGNLTKKLLEAG-KMVLLLNLILVW 84 Query: 83 FPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 F + P L +IQ D LK D +++I +AN+PY I + L F ++ Sbjct: 85 FSSSSAAFRAPLCPIELLVIQGDVLKTDLP-YYDIC-----VANIPYQISSPLTFKLLNH 138 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 P + ++FQ+E R AQ Y RLSV T Sbjct: 139 Q---PSFRCAIIMFQREFAMRFVAQPGDTLYCRLSVNT 173 >gi|10640644|emb|CAC12422.1| rRNA (adenine-N6, N6-)-dimethyltransferase (DIM1, yeast) related protein [Thermoplasma acidophilum] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 32/257 (12%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 MGQ FL ++IAE L G TV+EIG G G LT++L+ G K+ +EKD+ Sbjct: 1 MGQVFLQS----RRIAEYEVDLLGEPGTVLEIGPGHGVLTKILVERGF-KITAVEKDRYI 55 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 F L+ + + + L +I D L + S II N+PY+I + ++F + Sbjct: 56 FGELQSLRAAN---LNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEFE- 105 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + ++ QKE E+I + RL V R + +S F P P+V Sbjct: 106 ----FRRSVIMVQKEFAEKIAFPDDM---SRLYVNAHVRYNVELKRYVSRKNFNPQPEVD 158 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S ++ P LE L + + F K+RK L ++ + E+L + R Sbjct: 159 SAILVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKL-SNIFDICPEDL-------ADKRPS 210 Query: 263 NLSIEDFCRITNILTDN 279 NL++ + + +L D+ Sbjct: 211 NLTVSEILGLARLLFDS 227 >gi|322379602|ref|ZP_08053939.1| dimethyladenosine transferase [Helicobacter suis HS1] gi|322380213|ref|ZP_08054444.1| dimethyladenosine transferase [Helicobacter suis HS5] gi|321147379|gb|EFX42048.1| dimethyladenosine transferase [Helicobacter suis HS5] gi|321147996|gb|EFX42559.1| dimethyladenosine transferase [Helicobacter suis HS1] Length = 292 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 52/258 (20%) Query: 25 MGQNFLLDLNILKKIAES---SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD 79 +GQ+FL D + L +I +S D I ++EIG G G+LT LL + ++ E D Sbjct: 4 LGQHFLHDAHYLGQILQSIPYEHFKDWIQLVEIGVGLGDLTTRLLNKLESPKSLLAYEVD 63 Query: 80 ----QQFFPILKDISSQHPNRLEIIQDDALKVD----------------------FEKFF 113 Q+ + L +S RLE++ D ++ E F Sbjct: 64 PGLAQRLYHKLGPLS----ERLELVVGDVMQYKGINGADRQVCIQTADRDIRLSVSETGF 119 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P +++NLPY I T + I+ + ++ Q EV ++ A +S +YG Sbjct: 120 LCQKPYFLVSNLPYYIATPI----ITRALRDALCIGMAVMVQLEVADKFCAPVHSSNYGA 175 Query: 174 LSVLTG---WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI------PCCLESLKK 224 LSVL W+ ++F ++ F P PKV S + + P+ L+SL+ Sbjct: 176 LSVLADSLCWQRH--LLFKVNKEAFNPPPKVQSAFMRLLK--KPLVERETKGWDLKSLEH 231 Query: 225 ITQEAFGKRRKTLRQSLK 242 + + F RKTL +LK Sbjct: 232 LLKICFKANRKTLYNNLK 249 >gi|284041860|ref|YP_003392200.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM 14684] gi|283946081|gb|ADB48825.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM 14684] Length = 256 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 9/115 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + + QNF++D L+ + ++ LD V+++GAG G +T L AR V+ +E+D Sbjct: 10 RSALAQNFIVDERALRTLLDAV-PLDAARDVVVDLGAGRGAVTAQLAPRAAR-VLAVERD 67 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 + L+ +++ +E+++ DA V F S+P +++ANLP+N GT L+ Sbjct: 68 PAWAHELRTRAAREWRNVEVVEGDARAVAFP-----SAPFKVVANLPFNAGTGLV 117 >gi|330997743|ref|ZP_08321583.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella xylaniphila YIT 11841] gi|329569940|gb|EGG51696.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella xylaniphila YIT 11841] Length = 285 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 12/187 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 26 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 84 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N + DF F P ++++N+PY I T +F + Sbjct: 85 ALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKILMF 137 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ F +++ Q E +++ ++K Y +V +++++ P FFP P Sbjct: 138 ESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFFPPPT 193 Query: 201 VTSTVIH 207 V S +++ Sbjct: 194 VKSALLN 200 >gi|237713154|ref|ZP_04543635.1| ErmF [Bacteroides sp. D1] gi|237721691|ref|ZP_04552172.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4] gi|262409455|ref|ZP_06085997.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] gi|229446812|gb|EEO52603.1| ErmF [Bacteroides sp. D1] gi|229449487|gb|EEO55278.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4] gi|262352667|gb|EEZ01765.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] Length = 266 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 12/189 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G +T LL KV+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIKQANITQQDTVLDIGAGKGFITVHLLK-NVNKVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + K + + N + + DF KF P ++++N+PY I T +F Sbjct: 63 NDLVLY---KHLCKRFNNAQNV---QVVGCDFRKFTVPLLPFKVVSNIPYGI-TSDIFRI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + D F +++ Q E +++ + K Y +V +++ISP F P Sbjct: 116 LMFDNVELFLGG-SIVLQSEPAKKLVSSKV---YNPYTVFYHTFYDLEFLYEISPGSFLP 171 Query: 198 SPKVTSTVI 206 P V S ++ Sbjct: 172 PPTVKSALL 180 >gi|224750|prf||1112175A transferase,N-Me Length = 370 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S HPN +E++ D L + P + +PY I T + +W Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAE-----PPPEPFAFVGAIPYGI-TSAIVDWCLE- 146 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 P E+ T++ Q E A+K + YGR S LT Sbjct: 147 --APTIETATMVTQLEF-----ARKRTGDYGRWSRLT 176 >gi|196007440|ref|XP_002113586.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens] gi|190583990|gb|EDV24060.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens] Length = 330 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/285 (21%), Positives = 110/285 (38%), Gaps = 39/285 (13%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 L++ K+A+S G L +IE GPG LT+ LL G +++ +E +Q+F +LK++ Sbjct: 35 LINPQTADKVAKSFGDLHKYVIIEKDPGPGVLTKALLNAGCTQLVALESNQKFLSVLKEL 94 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPI----------------------RIIANLPY 127 + RL+ D K+D + P R+I Sbjct: 95 ENDSDGRLKAYYSDINKLDLIPLYQGYIPPVYQSGDILGHIKPKSWDDDIVGRVIGVANN 154 Query: 128 NIGTRLLFNWI-------SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +G R +++ W W+ + + ++ + A +P YGR++VL+ Sbjct: 155 TMGHRFTISYLIRLIERSGLHRWGR-WQHIA-YYTEKTARALYAHVGTPIYGRITVLSNI 212 Query: 181 RTKATMMFDISPHVFFPSP-KVTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRR 234 + + FFP + + I H L+ L I Q+ F RR Sbjct: 213 LCNISTLSKDHIDEFFPRGMAIKGNSMELICLETKKHCELSDEALKFLDPILQQVFAARR 272 Query: 235 KTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + L L+ + G +L + I A N+S DF + + Sbjct: 273 QPLLNRLESIAPGSYTVLEKLKIPPRKCASNMSPMDFVELAEAFS 317 >gi|238060827|ref|ZP_04605536.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC 39149] gi|237882638|gb|EEP71466.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC 39149] Length = 263 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 21/227 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL D + +I ++ G ++E+GAG G LT+ L R ++ E D Sbjct: 15 RRVLSQNFLADPAAVARIVGAARPAPGDLLLEVGAGRGRLTRALAARCGR-LVAYEVDPV 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P + + + D L D P ++ N+P+++ ++ ++AD Sbjct: 74 AAADLAVTCAGLPG-VSLRRADFLAADAP-----DEPFAVVGNIPWSLTAAVVRWCLAAD 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GWRTKATMMFDISPHVFF-PS 198 S TLL Q E A+K + H GR S LT W A + P F P Sbjct: 128 R----LRSATLLTQLEY-----ARKRTGHAGRWSRLTVLTWPEYAWRLAGTVPRTAFRPV 178 Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 P+V + ++ P+ P L + ++ + FG + SL R Sbjct: 179 PRVDAGILRLDRRAEPLLPPGDLPAYRRFVEVGFGGSGGCVAASLSR 225 >gi|15072727|emb|CAC47934.1| rRNA adenine-N6 methyltransferase [Bacteroides thetaiotaomicron] Length = 266 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F +++ Q E +++ ++K Y +V +++++ P F P Sbjct: 116 LMFENLENFLGG-SIVLQFEPTQKLFSRK---LYNPYTVFCHTFFDLKLVYEVGPESFLP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|221140091|ref|ZP_03564584.1| rRNA methylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|14021039|dbj|BAB47663.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|27529888|dbj|BAC53825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|282167041|gb|ADA81057.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|302750710|gb|ADL64887.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|302751482|gb|ADL65659.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 243 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 30/253 (11%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + VIEIG+G G+ T+ L+ + +R VI IE D + Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVIAIEIDGGLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K+ + N +++IQ D LK F K N +I N+PYNI T + + T+ Sbjct: 69 KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDI----VKRITFESQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ +K +R+ + + L +L M+ + P F P P V S +I Sbjct: 120 AKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174 Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAE 262 H P+ I+++ + K R K + + + L +N QA N+ Sbjct: 175 VLERH-QPL---------ISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNI 224 Query: 263 N-LSIEDFCRITN 274 N LS E F I N Sbjct: 225 NKLSKEQFLSIFN 237 >gi|307091880|gb|ADN28275.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G LT++LL GA KV IEKD++F L+D + P+ E++QDDAL E Sbjct: 21 ILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFATFPD-FELLQDDALAYLKE 78 Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134 K + S ++I+NLPY++ + +L Sbjct: 79 KDRDWSD-WKLISNLPYSVASSIL 101 >gi|228470626|ref|ZP_04055482.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3] gi|288801882|ref|ZP_06407324.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18] gi|299143035|ref|ZP_07036156.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735] gi|319641873|ref|ZP_07996549.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A] gi|228307634|gb|EEK16613.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3] gi|288335924|gb|EFC74357.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18] gi|298575486|gb|EFI47371.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735] gi|317386505|gb|EFV67408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A] Length = 266 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + ++ F +++ Q E +++ ++K Y +V +++++ P F P Sbjct: 116 LMFESLGNFLGG-SIILQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|416234|dbj|BAA03626.1| kasugamycin dimethyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 204 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 21/197 (10%) Query: 93 HPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 H N LEIIQ D L++D ++ + I II+N PY I + +LF + Sbjct: 11 HSN-LEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTLQI---SDLLTKA 66 Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH--- 207 + QKEV RI + KN +Y LS+ + ++ F ++ +F+P PKV S +I Sbjct: 67 VFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIPKVDSAIISLTF 126 Query: 208 ---FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENLLHQAGIETNL 259 + +N +E ++ + F +RKT + L I +NL Sbjct: 127 NNIYKKQINDDKKFIEFVRTL----FNNKRKTILNNLNNIIQNKNKALEYLKMLNISSNL 182 Query: 260 RAENLSIEDFCRITNIL 276 R E L I+++ ++ N++ Sbjct: 183 RPEQLDIDEYIKLFNLI 199 >gi|115949552|ref|XP_001179159.1| PREDICTED: similar to transcription factor B1, mitochondrial, partial [Strongylocentrotus purpuratus] Length = 86 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 KI +G+L G V E+G GPG +T+ ++ G + ++VIEKD +F P L+ ++ R+ Sbjct: 1 KIVRQAGNLQGAHVCEVGPGPGGITRSIINQGVQDLLVIEKDTRFIPSLEMLTEATEGRV 60 Query: 98 EIIQDDALKVDFEKFF 113 + DD L+V+ F Sbjct: 61 RVACDDILRVNLADAF 76 >gi|255012163|ref|ZP_05284289.1| rRNA adenine N-6-methyltransferase [Bacteroides fragilis 3_1_12] gi|313150007|ref|ZP_07812200.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|154893|gb|AAA27431.1| clindamycin resistance determinant (ermFS) [Bacteroides fragilis] gi|6979874|gb|AAF34636.1| ErmF [Shuttle vector pHS17] gi|313138774|gb|EFR56134.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 266 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + ++ F +++ Q E +++ ++K Y +V +++++ P F P Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|7715978|gb|AAF68230.1|AF203972_3 ErmF [Shuttle vector pBA] Length = 266 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + ++ F +++ Q E +++ ++K Y +V +++++ P F P Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|329944089|ref|ZP_08292348.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328530819|gb|EGF57675.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 267 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 14/136 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D +I+ I + +G ++EIG G G LT L LG R V IE D + + Sbjct: 12 GQNFLTDQSIIATITRLVVATEG-PIVEIGPGDGALTIPLARLG-RPVTAIEIDAR---L 66 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + +S + P+ ++++ DD L + ++ ++ NLP++ T +L + A P Sbjct: 67 ARCLSERLPSHVDVVSDDFLIYRLPTYPHV-----LVGNLPFHQTTAMLRRMLHA----P 117 Query: 146 FWESLTLLFQKEVGER 161 W + LL Q EV R Sbjct: 118 VWTNAILLVQWEVARR 133 >gi|299148760|ref|ZP_07041822.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23] gi|301311645|ref|ZP_07217571.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3] gi|313886992|ref|ZP_07820692.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas asaccharolytica PR426713P-I] gi|298513521|gb|EFI37408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23] gi|300830386|gb|EFK61030.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3] gi|312923518|gb|EFR34327.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas asaccharolytica PR426713P-I] Length = 266 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F +++ Q E +++ ++K Y +V +++++ P F P Sbjct: 116 LMFENLENFLGG-SIVLQFEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|127196|sp|P10337|ERMF_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150541|gb|AAA98217.1| macrolide-lincosamide-streptogramin B-resistance protein [Bacteroides fragilis] gi|154890|gb|AAA88675.1| macrolide-lincosamide-streptogramin-resistance protein [Bacteroides fragilis] gi|853782|emb|CAA60706.1| ermF [Bacteroides sp.] gi|1016682|gb|AAB39962.1| rRNA methyltransferase [Cloning vector pFD288] Length = 266 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + ++ F +++ Q E +++ ++K Y +V +++++ P F P Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|189910634|ref|YP_001962189.1| dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775310|gb|ABZ93611.1| Dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 292 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 19/206 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLL 66 +++ I +K GQNFL+D NI++ I + L +T+ EIG G G LT +L Sbjct: 11 IQSFFEEKGIRAQKKFGQNFLIDQNIVEYIVNVAKPLFSEGDVTLAEIGIGLGTLTYPIL 70 Query: 67 TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIAN 124 L ++ + E D + + KD I + P+ + + DAL E F+I + + N Sbjct: 71 CL-EKETDLFEIDHAYIQLAKDEILPKFPHAI-LHAGDAL----ENLFHIYPKKVFVFGN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY++ T ++ I ++ + QKE ER+ + +S LSV + Sbjct: 125 LPYHLTTEIINTLIINCR---HFQGGIFMVQKEFAERLVKETSS-----LSVFLSAFCEI 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIP 210 + + + FFP PK+ S ++ P Sbjct: 177 KFLKTVHKNCFFPIPKIHSALLLLTP 202 >gi|116197625|ref|XP_001224624.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51] gi|88178247|gb|EAQ85715.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51] Length = 371 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 10/192 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + I I + + V+E+G G GN+T L + +E D + Sbjct: 36 KDFGQHILKNPGISDAIVDKAYLKPTDVVVEVGPGTGNITVRALDKAKKLTRAVELDPRM 95 Query: 83 FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P +LE+I D +K+ + +I+N PY I + L+F ++ Sbjct: 96 GAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAM 150 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P L+FQ+E +R+ A+ Y RLSV + + + F P PK Sbjct: 151 PNPP---RVAVLMFQREFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPK 207 Query: 201 VTSTVIHFIPHL 212 V S V + P + Sbjct: 208 VESDVANPYPGV 219 >gi|400267|sp|Q02607|ERMU_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143943|gb|AAA63165.1| methyltransferase [Bacteroides fragilis] Length = 266 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 12/190 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPLRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + S N + DF F P ++++N+PY I T +F Sbjct: 63 NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F +++ Q E +++ ++K Y +V +++++ P F P Sbjct: 116 LMFENLENFLGG-SIVLQFEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171 Query: 198 SPKVTSTVIH 207 P V S +++ Sbjct: 172 PPTVKSALLN 181 >gi|167044871|gb|ABZ09538.1| putative ribosomal RNA adenine dimethylase [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 217 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 23/196 (11%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 V+EIG G G L L A++V IEKDQ K + N L +++ Sbjct: 17 VLEIGTGYGILIPYLCK-NAKQVFSIEKDQNLHLSAKSNFHDYTN---------LVLEYG 66 Query: 111 KFFNISSPIRI-IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 FN + ++NLPY+ +R W+ + ++ QKE E++++ N Sbjct: 67 DGFNSDHNFSVFVSNLPYS-KSRFAIEWLLQKKFS----RAVIMVQKEFSEKLSS--NEK 119 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 H +SVL + + + ++ FFP PKV S VI + ++K+I Sbjct: 120 HMA-ISVLANYGFRIKFLMNVKKSNFFPMPKVDSVVILLEQKRIISKVLISTVKRI---- 174 Query: 230 FGKRRKTLRQSLKRLG 245 F RRKTL+ LK+ G Sbjct: 175 FSYRRKTLQNILKQFG 190 >gi|294776564|ref|ZP_06742037.1| ribosomal RNA adenine dimethylase family protein [Bacteroides vulgatus PC510] gi|294449620|gb|EFG18147.1| ribosomal RNA adenine dimethylase family protein [Bacteroides vulgatus PC510] Length = 261 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 93/188 (49%), Gaps = 12/188 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 1 MPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLRI-ANNVVAIEND 59 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ + S N ++++ D + KF P ++++N+PY I T +F + Sbjct: 60 TALVEHLRKLFSDARN-VQVVGCDFRNFEVPKF-----PFKVVSNIPYGI-TSDIFKILM 112 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ F +++ Q E +++ ++K Y +V +++++ P F P P Sbjct: 113 FESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLPPP 168 Query: 200 KVTSTVIH 207 V S +++ Sbjct: 169 TVKSALLN 176 >gi|1171091|sp|P43433|MYRB_MICGR RecName: Full=Mycinamicin-resistance protein myrB gi|286054|dbj|BAA03402.1| myrB [Micromonospora griseorubida] Length = 311 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL+D + +IAE S V+E+GAG G +T+ L+ V +E D + Sbjct: 21 RHELGQNFLVDRGVCTRIAEVVSSTTAHPVLELGAGDGAITRALVAANL-PVTALELDPR 79 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ + + + ++ D L+ DF + P +++ +P++I T LL I Sbjct: 80 R---VRRLQRTFADGVTVVHGDMLRYDFGPY-----PHHVVSTVPFSITTPLLRRLIGQR 131 Query: 142 TWPPFWESLTLLFQKEVGER 161 FW + LL Q EV + Sbjct: 132 ----FWHTAVLLVQWEVARK 147 >gi|73993434|ref|XP_535250.2| PREDICTED: similar to Probable dimethyladenosine transferase (S-adenosylmethionine-6-N,N-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) (HUSSY-05) [Canis familiaris] Length = 201 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 12/154 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF- 83 +GQ+ L + ++ I + + V+E+G G GN+T LL +KVI E D + Sbjct: 34 IGQHILKNPLVVNSIIDKAALGPTDVVLEVGPGTGNMTVELLE-KVKKVIARELDPRLVA 92 Query: 84 -PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 P + + ++L+++ D LK D FF+ +ANLPY I + +F + Sbjct: 93 EPHKRVQGTPLASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PF+ L+FQ+E R+ A Y RLS+ Sbjct: 144 HRPFFRCAVLMFQREFALRLVAMPGDKLYCRLSI 177 >gi|313228792|emb|CBY17943.1| unnamed protein product [Oikopleura dioica] Length = 193 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + +++ + E +G L T++EIG G GN+T LL +KVI +E D++ Sbjct: 38 GQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVAE 96 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 ++ P ++L II DALK + FF++ ++ANLPY I + + F + Sbjct: 97 VQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL 145 >gi|307091914|gb|ADN28292.1| putative rRNA methyltransferase [uncultured bacterium] Length = 119 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D + L I ++ G +V+E+G G G +TQ LL GA KV +E D+ P+L+ Sbjct: 1 VDEDALDAILGAAEIQPGESVVEVGPGAGVVTQRLLAAGA-KVTAVELDEALAPLLEKRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +PN ++Q D L E +P +++ANLPY I Sbjct: 60 GGNPN-FHLVQGDILHTPREDLLGADAPAKLVANLPYYI 97 >gi|307092006|gb|ADN28338.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 10/112 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV---IEKDQQFFPILKD 88 D+N+ + I G V+EIG G G LT++L+ R+ I+ IEKDQ+ L++ Sbjct: 2 DMNLARWIVGQLRVRSGEHVVEIGPGLGALTELLV----REDILLTLIEKDQRMVKWLRE 57 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + R+E+ DAL D + S PI+II NLPY + T L+ +ISA Sbjct: 58 RFAS--PRVELFHIDALDFDLRTLYG-SGPIKIIGNLPYYVATALIAKYISA 106 >gi|307091956|gb|ADN28313.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G LT++LLT GA KV IEKD++ L+D + PN E++QDDAL E Sbjct: 21 ILEIGPGLGPLTELLLTSGA-KVFAIEKDRRLIDFLRDRFAPFPN-FELLQDDALAYLKE 78 Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134 K + + ++I+NLPY++ + +L Sbjct: 79 KDRDWTD-WKLISNLPYSVASPIL 101 >gi|195506441|ref|XP_002087207.1| GE14674 [Drosophila yakuba] gi|194186922|gb|EDX00506.1| GE14674 [Drosophila yakuba] Length = 160 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 13/141 (9%) Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 +TL FQKEV +RI A RLSV++ T+ M F I F P P+V V+ I Sbjct: 1 MTLTFQKEVADRICAPVGGEQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLI 60 Query: 210 PHLNP---IPCCLESLKKITQEAFGKRRKTLRQSLKRL--------GGENLLHQAGIETN 258 P P +P L ++++ + F R+K R+ L + L +A ++ Sbjct: 61 PLKRPKTQLPFPL--VERVVRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDT 118 Query: 259 LRAENLSIEDFCRITNILTDN 279 LR+ L++E R+ + +++ Sbjct: 119 LRSFELTVEQCLRLAEVYSEH 139 >gi|312109334|ref|YP_003987650.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1] gi|311214435|gb|ADP73039.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1] Length = 284 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 32/193 (16%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + GQ+ L + I+ + + + TV+++GAG G LT + A KVI +E D +F Sbjct: 20 FSGQHLLHNKRIINDLIQIANLTSNDTVLDLGAGKGALT-FPVAEKAGKVIAVEYDPRFV 78 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLFNWISA 140 ILK + +PN +++IQ D LK+ K P ++A +PY I T ++L + + Sbjct: 79 EILKKKAEAYPN-IKVIQQDILKLRLPK-----EPFIVVAGIPYAITTPIMKMLLHQPAN 132 Query: 141 DTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFD------ISPH 193 + L+ +K +R T+ +P ++ WR M FD IS Sbjct: 133 SL-----QRAVLVMEKGAAKRFTSYPITNP------LILKWR----MWFDLGYVREISRE 177 Query: 194 VFFPSPKVTSTVI 206 F P PKV S ++ Sbjct: 178 NFSPPPKVDSAIL 190 >gi|1169554|sp|P45439|ERMS_STRFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|153253|gb|AAA26742.1| ribosomal RNA N-methyltransferase [Streptomyces fradiae] Length = 319 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 30/251 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL + +++A G ++E+GAG G LT+ L R ++ E D + Sbjct: 60 RRELSQNFLARRAVAERVARLVRPAPGGLLLEVGAGRGVLTEALAPYCGR-LVAHEIDPR 118 Query: 82 FFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-IS 139 P L+D H + I D L + P + N+PY+ T + +W + Sbjct: 119 LLPALRDRFGGPHHAHVRISGGDFLAAPVPR-----EPFALAGNIPYSR-TAGIVDWALR 172 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GW-RTKATMMFDISPHVFF 196 A T S T + Q E A+K + YGR S+LT W R + ++ +S F Sbjct: 173 ART----LTSATFVTQLEY-----ARKRTGDYGRWSLLTVRTWPRHEWRLLGRVSRREFR 223 Query: 197 PSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P P+V S ++ P+ L ++ + F +L SL+R H+AG Sbjct: 224 PVPRVDSGILRIERRERPLLPSAALGDYHRMVELGFSGVGGSLYASLRR------AHRAG 277 Query: 255 -IETNLRAENL 264 ++ RA L Sbjct: 278 PLDAAFRAARL 288 >gi|119558|sp|P09891|ERMA_ARTS3 RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|80586|pir||A24026 erythromycin resistance protein - Arthrobacter sp gi|142204|gb|AAA22075.1| erythromycin resistance (ermA) protein [Arthrobacter sp.] gi|53794569|gb|AAU93796.1| ribosomal RNA methyltransferase [Aeromicrobium erythreum] Length = 340 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 23/199 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 ++ +GQNFL D +++IA+++ DG+ V+E G G G LT+ L R V E DQ Sbjct: 32 RRVLGQNFLRDPATIRRIADAADVDPDGL-VVEAGPGEGLLTRELARRAGR-VRTYELDQ 89 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-IS 139 + L +Q + +E++ DF + P + + +PY I T + +W ++ Sbjct: 90 RLARRLSTDLAQETS-IEVVH-----ADFLTAPHPEEPFQFVGAIPYGI-TSAIVDWCLT 142 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL--TGWRT-KATMMFDISPHVFF 196 A P S TL+ Q+E A+K + YGR + L T W T + + + +F Sbjct: 143 A----PTLTSATLVTQQEF-----ARKRTGDYGRWTALTVTTWPTFEWQYVAKVDRTLFT 193 Query: 197 PSPKVTSTVIHFIPHLNPI 215 P P+V S ++ P+ Sbjct: 194 PVPRVHSAIMRLRRRPQPL 212 >gi|32479370|ref|NP_862223.1| ErmCX [Corynebacterium striatum] gi|709806|gb|AAC95475.1| 23S rRNA methyltransferase [Corynebacterium striatum] gi|9945783|gb|AAG03357.1| ErmCX [Corynebacterium striatum] Length = 253 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 70 ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117 Query: 145 PFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 PAWTDAVLLMQWEVARR 134 >gi|15923042|ref|NP_370576.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15924645|ref|NP_372179.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15925755|ref|NP_373288.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|15926492|ref|NP_374025.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|15927234|ref|NP_374767.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|15927723|ref|NP_375256.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|15928177|ref|NP_375710.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|49482298|ref|YP_039522.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49483899|ref|YP_041123.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57865851|ref|YP_190052.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57867109|ref|YP_188794.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57867248|ref|YP_188915.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|148266484|ref|YP_001245427.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|148268136|ref|YP_001247079.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150392517|ref|YP_001315192.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150394203|ref|YP_001316878.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156978382|ref|YP_001440641.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|156979973|ref|YP_001442232.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|254663980|ref|ZP_05143452.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|255006441|ref|ZP_05145042.2| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257428438|ref|ZP_05604836.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431607|ref|ZP_05607975.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257793731|ref|ZP_05642710.1| rRNA methylase Erm [Staphylococcus aureus A9781] gi|258422472|ref|ZP_05685383.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719] gi|258447341|ref|ZP_05695487.1| rRNA methylase [Staphylococcus aureus A6300] gi|258448318|ref|ZP_05696443.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224] gi|258451920|ref|ZP_05699937.1| rRNA methylase [Staphylococcus aureus A5948] gi|258454555|ref|ZP_05702521.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937] gi|262053220|ref|ZP_06025373.1| rRNA methylase [Staphylococcus aureus 930918-3] gi|282929822|ref|ZP_06336965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102] gi|293503531|ref|ZP_06667378.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|294617324|ref|ZP_06696964.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] gi|295407727|ref|ZP_06817512.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819] gi|295429344|ref|ZP_06821965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297246800|ref|ZP_06930609.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796] gi|304378949|ref|ZP_07361713.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60389641|sp|Q6GKQ0|ERMA_STAAR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|60392246|sp|P0A0H1|ERMA_STAAM RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|60392247|sp|P0A0H2|ERMA_STAAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|60392248|sp|P0A0H3|ERMA_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|43731|emb|CAA26964.1| S-adenosyl-methionine dependent methylase [Staphylococcus aureus] gi|5360835|dbj|BAA82205.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|13699967|dbj|BAB41266.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|13700706|dbj|BAB42003.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|13701452|dbj|BAB42746.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|13701943|dbj|BAB43235.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|13702548|dbj|BAB43689.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|14245819|dbj|BAB56214.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|14247427|dbj|BAB57817.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|28465856|dbj|BAC57474.1| rRNA methylase [Staphylococcus aureus] gi|49240427|emb|CAG39078.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49242028|emb|CAG40727.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57636509|gb|AAW53297.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57637767|gb|AAW54555.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57637906|gb|AAW54694.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|62815916|emb|CAH17569.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|70568192|dbj|BAE06289.1| rRNA methylase [Staphylococcus aureus] gi|147739553|gb|ABQ47851.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|147741205|gb|ABQ49503.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149944969|gb|ABR50905.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|149946655|gb|ABR52591.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156720517|dbj|BAF76934.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|156722108|dbj|BAF78525.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|195963189|emb|CAQ43014.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|221327661|gb|ACM17505.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|238773849|dbj|BAH66412.1| rRNA methylase [Staphylococcus aureus] gi|255914597|emb|CBA13539.1| adenine methylase [Staphylococcus rostri] gi|257275279|gb|EEV06766.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257277661|gb|EEV08345.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257787703|gb|EEV26043.1| rRNA methylase Erm [Staphylococcus aureus A9781] gi|257841538|gb|EEV65976.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719] gi|257853867|gb|EEV76824.1| rRNA methylase [Staphylococcus aureus A6300] gi|257858413|gb|EEV81291.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224] gi|257860403|gb|EEV83234.1| rRNA methylase [Staphylococcus aureus A5948] gi|257863282|gb|EEV86044.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937] gi|259158881|gb|EEW43972.1| rRNA methylase [Staphylococcus aureus 930918-3] gi|269939564|emb|CBI47925.1| rRNA adenine N-6-methyltransferase ErmA1 [Staphylococcus aureus subsp. aureus TW20] gi|269941138|emb|CBI49525.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp. aureus TW20] gi|282589029|gb|EFB94134.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102] gi|285815777|gb|ADC36264.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981] gi|285817338|gb|ADC37825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981] gi|291095197|gb|EFE25462.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|291596433|gb|EFF27686.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] gi|294967403|gb|EFG43447.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819] gi|295126722|gb|EFG56367.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297176351|gb|EFH35626.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796] gi|299758060|dbj|BAJ10035.1| 23S rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|304342469|gb|EFM08344.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312828687|emb|CBX33529.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycinresistance protein) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128354|gb|EFT84366.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS03] gi|315195559|gb|EFU25946.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS00] gi|329727340|gb|EGG63796.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|224805|prf||1202257A gene ermA Length = 243 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 30/253 (11%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + VIEIG+G G+ T+ L+ + +R V IE D + Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K+ + N +++IQ D LK F K N +I N+PYNI T + + T+ Sbjct: 69 KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDI----VKRITFESQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ +K +R+ + + L +L M+ + P F P P V S +I Sbjct: 120 AKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174 Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAE 262 H P+ I+++ + K R K + + + L +N QA N+ Sbjct: 175 VLERH-QPL---------ISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNI 224 Query: 263 N-LSIEDFCRITN 274 N LS E F I N Sbjct: 225 NKLSKEQFLSIFN 237 >gi|14600800|ref|NP_147322.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Aeropyrum pernix K1] gi|27151617|sp|Q9YEM5|RSMA_AERPE RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|5104206|dbj|BAA79521.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Aeropyrum pernix K1] Length = 277 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 17/237 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGI-TVIEIGAGPGNLTQMLL 66 ++ +L + P +GQ+FL+D + + + + +GI +EIG G G++T Sbjct: 17 VREVLGLAGLRPSDRLGQHFLIDDRAVGEFLKPLEKAAAEGIREALEIGPGAGSITLPAA 76 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + R ++ +E D + L ++ P R+ +I D + S + +N P Sbjct: 77 EVLDR-IVAVELDNRLASALSRLA---PARVAVITGDGVS-----HAAASQAPLVFSNTP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 +N+ + + A + L Q EV R+TA+ S Y RLSVL A + Sbjct: 128 FNLSPAI----VEALAVNNRVAAAVLGVQYEVARRMTARPGSRDYSRLSVLVSLVFHAEL 183 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + P ++P P+V + V+ +L ++ AF +R K + L+R Sbjct: 184 AGVVRPQAYYPRPQVLTAVVTLRRRRRWRSLYARAL-ELAGCAFTQRNKKASKVLRR 239 >gi|119559|sp|P16898|ERMA_CORDI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|15778309|gb|AAL07369.1|AF411029_2 ErmX [Propionibacterium acnes] gi|40437|emb|CAA35836.1| unnamed protein product [Corynebacterium diphtheriae] gi|45564|emb|CAA40590.1| erythromycin methyltransferase [Corynebacterium diphtheriae] Length = 253 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 70 ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117 Query: 145 PFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 PAWTDAVLLMQWEVARR 134 >gi|1806115|emb|CAA92586.1| dimethylase [Kluyveromyces lactis] Length = 320 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 13/194 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + V+EIG G GNLT +L ARKV+ + Sbjct: 35 LGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQ-ARKVVRRGVRSSYGS 93 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 P +LEI+ D +K + +F++ I+N PY I + L+F I+ Sbjct: 94 GRTKRVHGTPVEKKLEILLGDFMKTELP-YFDVC-----ISNTPYQISSPLVFKLINQPK 147 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLS T + + + F P PKV Sbjct: 148 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPKVE 204 Query: 203 STVIHFIPHLNPIP 216 S+V+ I NP P Sbjct: 205 SSVVR-IEIKNPRP 217 >gi|13517632|gb|AAK28910.1|AF338706_1 ErmX [Corynebacterium jeikeium] Length = 284 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTDHKIINSIVDLVKQTSG-PIIEIGPGSGALTHPISHLG-RAITAVEVDAKLAAK 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L ++ +E++ D DF F ++P I+ N+P+++ T +L + A P Sbjct: 70 LTKKTAS--ASVEVVHD-----DFLNFPLPATPCVIVGNIPFHLTTAILRKLLHA----P 118 Query: 146 FWESLTLLFQKEVGER 161 W LL Q EV R Sbjct: 119 AWTDAVLLMQWEVARR 134 >gi|150238|gb|AAA98484.1| erythromycin resistance protein [Plasmid pNG2] Length = 284 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 70 ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117 Query: 145 PFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 PAWTDAVLLMQWEVARR 134 >gi|307091944|gb|ADN28307.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +IA ++EIG G G LT++LL GA KV IEKD++F L+D + Sbjct: 2 DANQLARIAALGELSTADKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 N +++QDDAL EK + S ++I+NLPY++ + +L Sbjct: 61 NLSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPIL 101 >gi|13517628|gb|AAK28907.1|AF338705_1 ErmX [Corynebacterium jeikeium] Length = 284 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQNF + I+K I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFFTNHKIIKSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 70 ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117 Query: 145 PFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 PAWTDAVLLMQWEVARR 134 >gi|282877321|ref|ZP_06286149.1| ribosomal RNA adenine dimethylase family protein [Prevotella buccalis ATCC 35310] gi|288926425|ref|ZP_06420346.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17] gi|281300560|gb|EFA92901.1| ribosomal RNA adenine dimethylase family protein [Prevotella buccalis ATCC 35310] gi|288336798|gb|EFC75163.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17] Length = 266 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 12/187 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P +Y GQ+F +D ++ + + + TVI+IGAG G LT L+ +I IE D Sbjct: 6 LPVRYTGQHFTIDKVLIDDAIKIAKINESDTVIDIGAGKGFLTVHLVR-QCTNIIAIEND 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + ILK+ S + N ++II DF + ++++N+P+ I + +L + Sbjct: 65 KSLLSILKNKFSNNTN-VKIID-----CDFRCYTIPKRNFKVVSNIPFRITSEIL-KSLM 117 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D+ F +L+ Q E +++ ++K Y V +M++IS F P P Sbjct: 118 FDSVEHFMGG-SLIMQLEPAQKLFSKKVFNPY---IVFYHTFFDLKLMYEISHESFLPPP 173 Query: 200 KVTSTVI 206 KV S ++ Sbjct: 174 KVKSALL 180 >gi|161528889|ref|YP_001582715.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus maritimus SCM1] gi|160340190|gb|ABX13277.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus maritimus SCM1] Length = 234 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 20/234 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +I +K +GQ+FL I + I + V EIG G G LT LL A+KVI ++ Sbjct: 1 MIKRKLLGQHFLNSQLIAESIVSEAKITKNDIVYEIGTGLGVLTP-LLCKKAKKVISVDA 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ K+ S N + D K D F ++NLPY+ ++ W+ Sbjct: 60 DENLIKKAKNTFSDIDNLVLKSGDGFKKKDTFSVF--------VSNLPYS-KSKDAIEWL 110 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + T+ ++ QKE +++ A+ S +S++ + +++ + F P Sbjct: 111 AQRTFSHG----VIMVQKEFAQKLVAK--SKDRKAISIIATHAFDIEKISNVNKNNFSPP 164 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 PKV S V+ + + ++ E F RRKT++ LK+ E+ L + Sbjct: 165 PKVDSVVLKITKKTDMDKTLISTI----NEIFSYRRKTVKNILKQFHKESDLEK 214 >gi|188593342|emb|CAO72206.1| ErmX protein [Bifidobacterium thermophilum] Length = 284 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L +S +E++ D DF F ++P I+ N+P+++ T +L + A P Sbjct: 70 LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118 Query: 146 FWESLTLLFQKEVGER 161 W LL Q EV R Sbjct: 119 AWTDAVLLMQWEVARR 134 >gi|188593350|emb|CAO72212.1| ErmX protein [Bifidobacterium thermophilum] Length = 284 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L +S +E++ D DF F ++P I+ N+P+++ T +L + A P Sbjct: 70 LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118 Query: 146 FWESLTLLFQKEVGER 161 W LL Q EV R Sbjct: 119 AWTDAVLLMQWEVARR 134 >gi|3800832|gb|AAC69327.1| rRNA methyltransferase PikR2 [Streptomyces venezuelae] Length = 322 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 30/249 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL+D +++ +I G ++EIG G G LT + L+ R + +E D + Sbjct: 9 RHELGQNFLVDRSVIDEIDGLVARTKG-PILEIGPGDGALT-LPLSRHGRPITAVELDGR 66 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + + ++ P + ++ D L+ + +P ++ N+P+++ T ++ + A Sbjct: 67 R---AQRLGARTPGHVTVVHHDFLQYPLPR-----NPHVVVGNVPFHLTTAIMRRLLDAQ 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-GWRTKATMMFDISPHV----FF 196 W + LL Q EV R S ++LT GW FD+ V F Sbjct: 119 ----HWHTAVLLVQWEVARRRAGVGGS------TLLTAGW--APWYEFDLHSRVPARAFR 166 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P V V+ P+ +++ + ++ F + L++ L+R G + Q + Sbjct: 167 PMPGVDGGVLAIRRRSAPLVGQVKTYQDFVRQVFTGKGNGLKEILRRTG---RISQRDLA 223 Query: 257 TNLRAENLS 265 T LR +S Sbjct: 224 TWLRRNEIS 232 >gi|325120060|emb|CBZ55612.1| putative dimethyladenosine synthase [Neospora caninum Liverpool] Length = 195 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 12/130 (9%) Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 +R+TA+ Y RLSV+ ++ + VF+P PKV + ++H + L Sbjct: 23 QRLTARPGERQYSRLSVVFALYGSCRIVKKLPSSVFYPVPKVDAALVHIAFRQASLREIL 82 Query: 220 E-----SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---TNLRAENLSIEDFCR 271 + + AFG+RRK LR SLK + L H A + +LR + LS EDF Sbjct: 83 RGADPHQFRTVLHAAFGQRRKMLRSSLKPI----LPHPAALPEHFASLRPQQLSPEDFLD 138 Query: 272 ITNILTDNQD 281 +TN + + D Sbjct: 139 LTNAIFSSPD 148 >gi|227487333|ref|ZP_03917649.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227543276|ref|ZP_03973325.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092759|gb|EEI28071.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227180946|gb|EEI61918.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 284 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 70 ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117 Query: 145 PFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 PAWTDAVLLMQWEVARR 134 >gi|32470494|ref|NP_863178.1| Erm(X) [Corynebacterium diphtheriae] gi|172041601|ref|YP_001801315.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum DSM 7109] gi|296285265|ref|YP_003657307.1| erythromycin resistance protein [Corynebacterium resistens DSM 45100] gi|300932440|ref|ZP_07147696.1| erythromycin resistance protein [Corynebacterium resistens DSM 45100] gi|20149029|gb|AAM12763.1|AF492560_4 Erm(X) [Corynebacterium diphtheriae] gi|109158265|gb|ABG26481.1| ErmX [Corynebacterium urealyticum DSM 7109] gi|171852905|emb|CAQ05881.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum DSM 7109] gi|296172995|emb|CBL95077.1| erythromycin resistance protein [Corynebacterium resistens DSM 45100] Length = 284 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 70 ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117 Query: 145 PFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 PAWTDAVLLMQWEVARR 134 >gi|188593347|emb|CAO72210.1| ErmX protein [Bifidobacterium thermophilum] gi|188593353|emb|CAO72214.1| ErmX protein [Bifidobacterium thermophilum] Length = 255 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L +S +E++ D DF F ++P I+ N+P+++ T +L + A P Sbjct: 70 LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118 Query: 146 FWESLTLLFQKEVGER 161 W LL Q EV R Sbjct: 119 AWTDAVLLMQWEVARR 134 >gi|168064371|ref|XP_001784136.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664336|gb|EDQ51060.1| predicted protein [Physcomitrella patens subsp. patens] Length = 274 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 19/165 (11%) Query: 59 GNLTQMLLTLGARKVIVIEKD-QQFFPILKDI-SSQHPNRLEI-----IQDDALKVDFEK 111 GNLT LL + KVI +E D + + + + + N+L++ IQ LK + Sbjct: 115 GNLTMKLLEVC--KVIAVELDPRMVLEVTRRVQGTPCANKLQVWMLAVIQCYILKTELP- 171 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 +F++ +AN+PY I + + F +S PP +LFQ+E + + AQ + Sbjct: 172 YFDVC-----VANVPYMISSPITFKLLSH---PPLVRCAVILFQEEFAQHLVAQPGDSLF 223 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 RLS T + + + + P PKV S+V+ P NP+P Sbjct: 224 CRLSANTQLLARVFHLLKVGKNNLRPPPKVDSSVVRIEPR-NPLP 267 >gi|329314329|gb|AEB88742.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus T0131] Length = 191 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 15/180 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + VIEIG+G G+ T+ L+ + +R V IE D + Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K+ + N +++IQ D LK F K N +I N+PYNI T + + T+ Sbjct: 69 KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNIST----DIVKRITFESQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ +K +R+ + + L +L M+ + P F P P V S +I Sbjct: 120 AKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174 >gi|188593358|emb|CAO72217.1| ErmX protein [Bifidobacterium thermophilum] Length = 251 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L +S +E++ D DF F ++P I+ N+P+++ T +L + A P Sbjct: 70 LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118 Query: 146 FWESLTLLFQKEVGER 161 W LL Q EV R Sbjct: 119 AWTDAVLLMQWEVARR 134 >gi|37359459|gb|AAP74657.1| ribosomal methylase Erm34 [Bacillus clausii] Length = 281 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 34/206 (16%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P + GQ+F+ + +LK+I + + TV+E+GAG G LT +L+ A +V+ +E DQ Sbjct: 18 PPNFSGQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALT-TILSERADRVLAVEYDQ 76 Query: 81 QFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLF 135 + L K + S++ + I+ D +KV + P +++N+PY+I T ++L Sbjct: 77 KCIEALQWKLVGSKN---VSILHQDIMKVALP-----TEPFVVVSNIPYSITTAIMKMLL 128 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------ 189 N + ++ +K +R T+ Y + W M FD Sbjct: 129 NNPKNKL-----QRGAIVMEKGAAKRFTSVSPKDAY-----VMAWH----MWFDIHYERG 174 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI 215 IS F P PKV S ++ + +P+ Sbjct: 175 ISRSSFSPPPKVDSALVRIVRKQHPL 200 >gi|188593360|emb|CAO72218.1| ErmX protein [Bifidobacterium animalis] Length = 255 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84 GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 12 GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 70 ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117 Query: 145 PFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 PAWTDAVLLMQWEVARR 134 >gi|146302849|ref|YP_001190165.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348] gi|145701099|gb|ABP94241.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348] Length = 217 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 31/181 (17%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL+D I+ +I + L + IEIG G GNL++ L + IE D + P Sbjct: 4 SQNFLVDQEIISRIVGYASELRPL--IEIGCGKGNLSRFL-----NPDVCIELDSRLLPF 56 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L S +P +Q DA K+ + +I+++LPY+I + D++P Sbjct: 57 L---SQYNP-----VQGDARKLPVSRG-------QIVSSLPYSITSDFFVEVSRLDSFP- 100 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 L L+ Q++ +I + P + LS L + + + + I P F P PKV S++ Sbjct: 101 ---RLLLVLQEDFVNKIL---DYPTF--LSFLLNYYYRISELMVIPPKAFRPVPKVFSSL 152 Query: 206 I 206 + Sbjct: 153 V 153 >gi|157695030|gb|ABV66104.1| dimethyladenosine transferase [Rickettsiella melolonthae] Length = 119 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 ++F++D IL+ IA +IEIG G G LT+ LL + + VIE D+ P L Sbjct: 2 ESFVID-KILQAIAPHKTD----HMIEIGPGLGALTERLLP-HLKSLTVIELDKDLIPFL 55 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + L + Q D LK+DF R++ NLPYNI T LLF+ + Sbjct: 56 QKKCAA-LGELIVYQGDVLKIDFHTLSKTEQVWRLVGNLPYNISTPLLFHCLE 107 >gi|294868|gb|AAA26492.1| N-6-amino adenine-N-methyl transferase [Saccharopolyspora erythraea NRRL 2338] Length = 370 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 16/157 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S HPN +E++ D L + P + +PY I T + +W Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAE-----PPPEPFAFVGAIPYGI-TSAIVDWCLE- 146 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 P E+ T++ Q E A+K + YGR S LT Sbjct: 147 --APTIETATMVTQLEF-----ARKRTGDYGRWSRLT 176 >gi|1927195|gb|AAB51440.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces viridochromogenes] Length = 259 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 19/224 (8%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITV---IEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + + QNFL D ++A + G+ V +E+GAG G LT+ LL R ++ E D Sbjct: 9 RALSQNFLADRAAAGQLARLAAP-HGLPVPLLLEVGAGKGALTE-LLAPRCRSLLAYEID 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P+L+ + P+ + ++ +D L+ + +P + N+P++ ++ + Sbjct: 67 PRLVPVLRSRFADAPH-VRVLGEDFLRARAPR-----TPFSVAGNVPFSRTAAVVAWCLR 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A P TLL Q E R T S + RL+VLT R + + + F P P Sbjct: 121 A----PHLTDATLLTQLEYARRRTGDYGS--WTRLTVLTWPRHEWRLAGRVGRRSFRPVP 174 Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241 +V + ++ P+ P +++ F +L SL Sbjct: 175 RVDAGIVRIERRRTPLLAPGADAGWRELVDLGFSGAGGSLHASL 218 >gi|73487015|gb|AAZ76628.1| Erm(40)wo [Mycobacterium wolinskyi] Length = 246 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 27/254 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D ++ I E G ++EIGAG G LT L LG R + IE D + Sbjct: 8 RHEFGQNFLCDRRVVADIVEIISRTTG-PIVEIGAGDGALTVPLQWLG-RPLTAIEIDSR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +S + + DF +F +P I+ NLP+++ T +L + Sbjct: 66 RAERLAGHTSA----------EVVATDFLRFRLPRTPHVIVGNLPFHLTTAMLRRLLHG- 114 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPS 198 P W LL Q EV R G +++T W + + +S + F P Sbjct: 115 ---PGWTDAVLLVQWEVARRRAG------VGGATMMTAQWWPWFEFGLARKVSANAFRPR 165 Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P V + ++ +P+ + + + F R + + Q + R + L GI Sbjct: 166 PTVDAGLLTITRRAHPMIDAADRRRYQALVHQVFTGRGRGIAQIIGRRVPRHWLRDNGIN 225 Query: 257 TNLRAENLSIEDFC 270 ++L+ + Sbjct: 226 PAALPKDLTATQWA 239 >gi|115400783|ref|XP_001215980.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624] gi|114191646|gb|EAU33346.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624] Length = 287 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 15/176 (8%) Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 RL++I D +K + +F++ I+N PY I + L F ++ P L+FQ Sbjct: 17 RLDVILGDFMKTELP-YFDVC-----ISNTPYQISSPLTFKLLATTPAP---RVCILMFQ 67 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 +E R+ A+ Y RLSV K + + + F P P V S+V+ +P NP Sbjct: 68 REFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVDSSVVRLVPK-NPR 126 Query: 216 P-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--QAGIETNLRAENLSIED 268 P E + + F ++ KT+R S LG ++ +A T ++ +ED Sbjct: 127 PQINYEEWDGLLRICFVRKNKTIRSSF--LGKHTVMDLLEANYRTWCAQNDIPVED 180 >gi|260577655|ref|ZP_05845591.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC 43734] gi|258604201|gb|EEW17442.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC 43734] Length = 284 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 21/140 (15%) Query: 26 GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 GQNFL D I+ I ESSG +IEIG G G LT L LG R + +E D + Sbjct: 12 GQNFLTDHKIINSIVDLVKESSGP-----IIEIGPGSGALTHPLSRLG-RPITAVEVDAK 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ +E++ DF F ++P I+ N+P+++ T +L + A Sbjct: 66 LAAKLTKKTAS--ASVEVVHG-----DFLNFPLPATPCVIVGNIPFHLTTAILRELLHA- 117 Query: 142 TWPPFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 ---PAWTDAVLLMQWEVARR 134 >gi|73487007|gb|AAZ76622.1| Erm(39)ho [Mycobacterium houstonense] Length = 246 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 34/251 (13%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D ++ IA+ G ++E+GAG G LT L L R + IE D++ Sbjct: 8 RHETGQNFLCDRRVVADIADIVARTTG-PIVEVGAGDGALTLPLQRLN-RPLTAIEIDRR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + +S + + DF ++ +P ++ NLP+++ T +L + A Sbjct: 66 RATRLAERTSA----------EVVSADFLRYRLPRTPHVVVGNLPFHLTTAILRRLLHA- 114 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG----WRTKATMMFDISPHVFFP 197 P W L+ Q EV R A G +++T W + + IS F P Sbjct: 115 ---PGWTDAVLVVQWEVARRRAA------VGGATMMTAQWWPW-FEFGLARKISAESFRP 164 Query: 198 SPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSL-----KRLGGENLL 250 P V + ++ P+ + + + F R + L Q L +R G N + Sbjct: 165 RPSVDAGLLTITRRTEPLVDWADRQRYQSLVHRVFTGRGRGLGQILRPHVDRRWLGANRV 224 Query: 251 HQAGIETNLRA 261 H + L A Sbjct: 225 HPHALPRELTA 235 >gi|307091974|gb|ADN28322.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D + Sbjct: 2 DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 N L+++QDDAL EK + S ++++NLPY++ + +L ++ + PP Sbjct: 61 TFSN-LDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPILVE-LALGSHPP 111 >gi|307091948|gb|ADN28309.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 3/84 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G LT++LL GA KV IEKD++F L+D + + E++QDDAL E Sbjct: 21 ILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFATFSD-FELLQDDALAYLKE 78 Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134 K + S ++I+NLPY++ + +L Sbjct: 79 KDRDWSD-WKLISNLPYSVASPIL 101 >gi|291402058|ref|XP_002717677.1| PREDICTED: transcription factor B2, mitochondrial [Oryctolagus cuniculus] Length = 397 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%) Query: 14 LSHYKIIPKKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 + +++ PK+Y+ L + + IL+ + SL +E GPG LTQ LL GA Sbjct: 61 VCKHRLDPKRYVSSRGLAETLVQILRGSQKDPRSL----FLECNPGPGVLTQALLETGA- 115 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV+ +E D+ F P L+ + + +LE++ D K+D K + PI I L N+G Sbjct: 116 KVVALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGI 175 Query: 132 RLL 134 + L Sbjct: 176 KAL 178 >gi|56965270|ref|YP_177002.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16] gi|56911514|dbj|BAD66041.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16] Length = 281 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 34/206 (16%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P + GQ+F+ + +LK+I + + TV+E+GAG G LT +L+ A +V+ +E DQ Sbjct: 18 PPNFSGQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALT-TILSERADRVLAVEFDQ 76 Query: 81 QFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLF 135 + L K + S++ + I+ D +KV + P +++N+PY I T ++L Sbjct: 77 KCVEALQWKLVGSKN---VSILHQDIMKVTLP-----TEPFVVVSNIPYAITTAIMKMLL 128 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------ 189 N + ++ +K +R T+ Y + W M FD Sbjct: 129 NNPKNKL-----QRGAIVMEKGAAKRFTSVSPKDAY-----VMAWH----MWFDIHYERG 174 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI 215 IS F P PKV S ++ + +P+ Sbjct: 175 ISRSAFSPPPKVDSALVRIVRKQHPL 200 >gi|326513775|dbj|BAJ87906.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 227 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 +L+ + +++ ++G G V+EIG G G+LT LL V+ +EKD+ +++D Sbjct: 1 MLNARVNEELVAAAGVEVGDVVLEIGPGTGSLTAALLAA-GATVVAVEKDKHMATLVRD- 58 Query: 90 SSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWISA 140 +L++I++D K F +++ANLP+N+ T ++ + Sbjct: 59 RFGSTEQLKVIEEDITKFHVHSHFLPILDEKSRGTKKYAKVVANLPFNVSTEVVKQILPM 118 Query: 141 DTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + L+ Q E R+ A +P Y ++V + ++ F + FFP P Sbjct: 119 GD---VFSVMVLMLQDEAALRLANASIQTPEYRPINVFVNFYSEPEYKFKVERANFFPQP 175 Query: 200 KVTSTVIHF 208 V VI F Sbjct: 176 TVDGGVIRF 184 >gi|307091942|gb|ADN28306.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 5/121 (4%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I ++ DG ++EIG G G LT +LL A++V+ +EKD + L+ Sbjct: 2 DHNQLQRIVQAGDVKDGDLILEIGPGLGPLTSLLLG-HAKRVLAVEKDPRLVTFLRKKFE 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 + N LE++ DAL ++ + + + ++I+NLPY++G+ +L + ++ PP ++T Sbjct: 61 KEAN-LELVHADAL--EYLRAPHDWTNWKMISNLPYSVGSPILVD-LANTAKPPERMTVT 116 Query: 152 L 152 L Sbjct: 117 L 117 >gi|307091876|gb|ADN28273.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N+ + I + G G ++EIG G G LT L AR + ++EKD + L Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLG--QQ 58 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLPY + T L+ + +A Sbjct: 59 FRSDRVELFHIDALDFDLRTLYG-RGPVRIIGNLPYYVSTPLIAKYTAA 106 >gi|307091980|gb|ADN28325.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D + L+ IA + + G T++EIG G G LT +L G +I IE D+ L++ Sbjct: 1 VDRSALEAIAGAVVAGSGDTIVEIGPGRGALTDILAARG-NPLIAIEIDRALSEKLRERY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +P R+ I++ D L+ D + P ++ N+PY I T +LF+ + PPF S Sbjct: 60 GSNP-RVTIVERDVLETDVAAL--AAGPFVVVGNVPYYITTPILFHVLR----PPFPRSA 112 Query: 151 TLL 153 L Sbjct: 113 VFL 115 >gi|307091958|gb|ADN28314.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N + +IA ++EIG G G LT+ LL GA KV+ IEKD++ L+D + Sbjct: 2 DANQIARIAALGELSASDKILEIGTGLGPLTEFLLAYGA-KVLAIEKDRRLVDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 N +++QDDAL EK + S ++I+NLPY++ + +L ++ + PP Sbjct: 61 TFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111 >gi|307091902|gb|ADN28286.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++IA G V+EIG G G LT +LL GA +V+ IEKDQ+ +L++ + Sbjct: 2 DQNQLQRIAAFGELKPGDRVLEIGPGLGPLTAVLLAGGA-QVLAIEKDQRLCEVLRERFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 P R E++ DAL+ ++ + ++I+NLP+++ + LL A+ P Sbjct: 61 AEP-RFELLHADALEF-LKRERRDWTGWKLISNLPFSVASPLLVEMAFAEKPP 111 >gi|307091964|gb|ADN28317.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +IA ++EIG G G LT++LL GA KV IEKD++F L+D + Sbjct: 2 DANQLARIAVLGELSASDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 N +++QDDAL EK + ++I+NLPY++ + +L Sbjct: 61 TFSN-FDLLQDDALAYLREKDRDWGD-WKLISNLPYSVASPIL 101 >gi|307091938|gb|ADN28304.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091976|gb|ADN28323.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N+ + I + G G ++EIG G G LT L AR + ++EKD + L Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLG--QQ 58 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLPY + T L+ + +A Sbjct: 59 FRSDRVELFHIDALDFDLRTLYG-RGPVRIIGNLPYYVSTPLIAKYTAA 106 >gi|68536522|ref|YP_251227.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411] gi|68264121|emb|CAI37609.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411] Length = 284 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D I+ I + G +IEIG G G LT L LG R + +E D + Sbjct: 12 GQNFLTDHKIINSIVDLVKQSSG-PIIEIGPGSGALTHPLSRLG-RPITAVEVDAKLAAK 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L ++ +E++ DF F ++P I+ N+P+++ T +L + A P Sbjct: 70 LTKKTAS--ASVEVVHG-----DFLNFPLPATPCVIVGNIPFHLTTAILRKLLHA----P 118 Query: 146 FWESLTLLFQKEVGER 161 W LL Q EV R Sbjct: 119 AWTDAVLLMQWEVARR 134 >gi|159232386|emb|CAM96571.1| 23S rRNA methyltransferase [Streptomyces ambofaciens] Length = 282 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/269 (22%), Positives = 111/269 (41%), Gaps = 43/269 (15%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDG-----------ITVIEIGAGPGNLTQMLLTLGA 70 ++ GQNF S LDG + +EIGAG G +T++L + G Sbjct: 23 RREWGQNFF---RTAAAACRFSAQLDGSDTIPPDSPNDLMTVEIGAGSGRVTKVLASPGT 79 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++ +E D ++ + ++++ + ++ +D L + P+R+I NLP+ G Sbjct: 80 -PLLAVEIDPRW---ARRLAAESLPDVTVVNEDFLTLQLP-----GQPVRLIGNLPFVTG 130 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKE-VGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 TR+L + D P L Q+E VG+R A +G W + FD Sbjct: 131 TRMLRRCL--DMGPARMRQGVFLLQREYVGKRTGA------WGGNLFNAQW--EPWYSFD 180 Query: 190 ----ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLK- 242 S F P P+ + + PH P E + ++ Q F + T+ + + Sbjct: 181 RGLAFSRQDFTPVPRADTQTLMVAPHRRPSVPWREKAAYQRFVQRVFDTGQMTVGDAARK 240 Query: 243 --RLGGENLLHQAGIETNLRAENLSIEDF 269 R G + AG+ R ++L++ ++ Sbjct: 241 VLRRGHAQFVRGAGVRPADRVKDLTVPEW 269 >gi|188593355|emb|CAO72215.1| ErmX protein [Bifidobacterium thermophilum] Length = 284 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL + I+ I + G +IEIG G G LT + LG R + +E + + Sbjct: 8 RHEYGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVNAK 65 Query: 82 FFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 I ++ SS +E++ D DF F ++P I+ N+P+++ T +L + A Sbjct: 66 LAAKITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA 117 Query: 141 DTWPPFWESLTLLFQKEVGER 161 P W LL Q EV R Sbjct: 118 ----PAWTDAVLLMQWEVARR 134 >gi|329930026|ref|ZP_08283651.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5] gi|328935425|gb|EGG31897.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5] Length = 288 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 34/224 (15%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P + Q+ L+ ++ + + + TV++IGAG G LT + L A V+ IE D Sbjct: 15 PSNFSAQHLLISKRLIHDMIDLAQIRSTDTVLDIGAGTGALT-LPLAEKAGHVLAIETDP 73 Query: 81 QFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 F L KD S+ + + Q D L++ + +P ++AN+PY+I T ++ Sbjct: 74 AFVDKLLGKMKDSSN-----IRVKQSDFLEIPLPR-----NPFAVVANIPYSITTPIMGK 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDI----- 190 + P + LL + +R TA P + WR M +DI Sbjct: 124 LLECPGLP--LQRAALLVEMGASKRFTAVPIQDPR------ILSWR----MQYDIRLVRT 171 Query: 191 -SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 SPH F P P+V S ++ P+ K A+G R Sbjct: 172 VSPHHFAPPPQVDSAILTIHRRKKPLIAASSQPKFTALAAYGLR 215 >gi|322779454|gb|EFZ09646.1| hypothetical protein SINV_04081 [Solenopsis invicta] Length = 148 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 49/100 (49%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 +FQ+E ER+ A+ Y RLS+ T + M+ + + F P PKV S V+ P Sbjct: 1 MFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRN 60 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P + +T+ AF ++ KTL + K+ +L + Sbjct: 61 PPPPINYQEWDSLTRIAFMRKNKTLSAAFKQTTVVTMLEK 100 >gi|258411260|ref|ZP_05681537.1| rRNA methylase Erm [Staphylococcus aureus A9763] gi|257839989|gb|EEV64456.1| rRNA methylase Erm [Staphylococcus aureus A9763] Length = 221 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 30/229 (13%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 VIEIG+G G+ T+ L+ + +R V IE D + K+ + N +++IQ D LK F Sbjct: 12 VIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEAVNPSEN-IKVIQTDILKFSFP 69 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 K N +I N+PYNI T + + T+ + L+ +K +R+ + + Sbjct: 70 KHIN----YKIYGNIPYNISTDI----VKRITFESQAKYSYLIVEKGFAKRLQNLQRA-- 119 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230 L +L M+ + P F P P V S +I H P+ I+++ + Sbjct: 120 ---LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERH-QPL---------ISKKDY 166 Query: 231 GKRR----KTLRQSLKRLGGENLLHQAGIETNLRAEN-LSIEDFCRITN 274 K R K + + + L +N QA N+ N LS E F I N Sbjct: 167 KKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFN 215 >gi|271965962|ref|YP_003340158.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum DSM 43021] gi|270509137|gb|ACZ87415.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum DSM 43021] Length = 275 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 31/193 (16%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 ++ + QNF++D + + +I E++G D V+E GAG G LT+ L T G +V+ E D Sbjct: 30 RRTLSQNFIVDPDAVARIVEAAGPHD--LVLEPGAGEGVLTRALAGTCG--QVVGYEVD- 84 Query: 81 QFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 P+L ++ R+ +++ D L + P ++ N+PY+I ++++ Sbjct: 85 ---PLLAGRLAARTRDDARIRVVRGDFLAARAPR-----EPFAVVGNIPYSITSKIVDWC 136 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT----GWRTKATMMFDISPH 193 + A P S TL Q E A+K + +GR S+LT W + ++ +S Sbjct: 137 LRA----PDLTSATLTTQLEY-----ARKRTGDFGRWSMLTVQTWPWYSW-ELLGHLSRE 186 Query: 194 VFFPSPKVTSTVI 206 VF P P V S ++ Sbjct: 187 VFRPIPAVDSAIL 199 >gi|284518868|gb|ADB92556.1| Ccr1 [Streptomyces caelestis] Length = 341 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 23/255 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNF +++ G+++G+ +EIG G G +T+ L G + V+E D Q Sbjct: 58 RRVWGQNFFKSKAAVRRFTAQIGAVEGLPTVEIGPGSGMITKELAKSG-EPLTVVEIDDQ 116 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + +L + + P+ + ++ +D L E + R++ NLP+ T +L + Sbjct: 117 WARLLAE---ELPSHVTMVNEDFLSWGPE-----TECFRMVGNLPFGASTEILRTCLGYG 168 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT--MMFDISPHVFFPSP 199 P + L Q E A+K + +G W T M + H F P P Sbjct: 169 --PDRFLEGVFLVQLEF-----ARKRAGAWGGNLFNAQWSPWFTFHMGHEFPRHCFRPVP 221 Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAG 254 K + + P +P+ E + +++ F + T+ ++ +R+ + L +A Sbjct: 222 KTDTATLFVDPRRDPLLPWRERVAYQELVSAVFNTGQLTVGEAAQRVNVRKPADWLRRAE 281 Query: 255 IETNLRAENLSIEDF 269 + R ++L ED+ Sbjct: 282 VFPETRVKDLDAEDW 296 >gi|296138265|ref|YP_003645508.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola DSM 20162] gi|296026399|gb|ADG77169.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola DSM 20162] Length = 253 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 23/140 (16%) Query: 26 GQNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 GQNFL D +IL IAES G ++EIG G G LT L LG R + V+E D++ Sbjct: 12 GQNFLTDRRIIASILNIIAESDGP-----ILEIGPGAGALTVPLANLG-RPLTVVEIDEK 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + H R + + DF + P ++ NLP+++ T +L + A Sbjct: 66 YV---------HALRRTRLDATIVHGDFLRHRLPDEPATVVGNLPFHLTTAILRKLLHA- 115 Query: 142 TWPPFWESLTLLFQKEVGER 161 P W L+ Q EV R Sbjct: 116 ---PHWTDAVLITQWEVARR 132 >gi|307092002|gb|ADN28336.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D + Sbjct: 2 DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 N +++QDDAL EK + S ++++NLPY++ + +L Sbjct: 61 TFSN-FDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPIL 101 >gi|155965924|gb|ABU40944.1| erythromycin resistance methylase [Streptococcus suis] Length = 193 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 VIEIG+G G+ T+ L+ + +R V IE D+ + K+ + N +++IQ D LK F Sbjct: 16 VIEIGSGKGHFTKELVKM-SRSVTAIEIDEGLCQVTKEAVNPSEN-IKVIQTDILKFSFP 73 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 K N +I N+PYNI T + + T+ + L+ +K +R+ + + Sbjct: 74 KHIN----YKIYGNIPYNISTDI----VKRITFESQAKYSYLIVEKGFAKRLQNLQRA-- 123 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L +L M+ + P F P P V S +I Sbjct: 124 ---LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 156 >gi|307103105|gb|EFN51369.1| hypothetical protein CHLNCDRAFT_141143 [Chlorella variabilis] Length = 388 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 17/164 (10%) Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTG 179 ++ANLPY I L + +L + Q EVG R+T + + + ++++T Sbjct: 198 VVANLPYYITKDCLAQMLPLGG---RVAALYFMLQHEVGVRLTQEDPGASDWRAMNLVTQ 254 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP------IPCCLESLKKITQEAFGKR 233 + ++A +F+I + PSPKV V+ F L P +P + LK I ++AF +R Sbjct: 255 YYSQAQYLFEIDRRKYHPSPKVNGAVVRFA--LTPPSQRLAVPSEPDFLKLI-KKAFSQR 311 Query: 234 RKTLRQSLKRLGGENLL----HQAGIETNLRAENLSIEDFCRIT 273 RK +R +L+ L + AG+ + RA++L++ F + Sbjct: 312 RKVVRNALRPLYEPGQVAAALAAAGLSEDARAQDLTLLQFGELA 355 >gi|13541146|ref|NP_110834.1| rRNA dimethyladenosine transferase [Thermoplasma volcanium GSS1] gi|14324532|dbj|BAB59459.1| dimethyladenosine transferase [Thermoplasma volcanium GSS1] Length = 237 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 30/221 (13%) Query: 23 KYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K +GQ FL ++IAE L G +V+EIG G G LT +LL G V +EK Sbjct: 5 KRLGQVFLRS----RRIAEYEVDLLNGHPGDSVLEIGPGHGILTSILLDRGYY-VTAVEK 59 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ + L I +++ N ++ + K DF II N+PY I + ++F Sbjct: 60 DRFVYNELLSIKNKNLNLFNMDFLDMPPQKYDF-----------IIGNIPYYISSDVIFK 108 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + ++ QKE +++T K+S RL V R + + + F Sbjct: 109 LYDFE-----FSASVIMVQKEFADKLTNVKDS---SRLYVNAYVRYEIDLKRYVGRKNFN 160 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 P PKV S ++ + L+ L + F K+RK + Sbjct: 161 PQPKVDSAILLLKKKKINLDIPLDYLDSKLKVMFSKKRKMI 201 >gi|289670945|ref|ZP_06492020.1| dimethyladenosine transferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 89 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGEN 248 P F P PKV S V+ +P +P + ++ + + FG+RRKTLR +L + Sbjct: 1 PGAFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPA 59 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 60 HFEAAQVRPDARAEQLEVADFIRLANV 86 >gi|73486998|gb|AAZ76615.1| Erm(39)bo [Mycobacterium boenickei] Length = 246 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 27/254 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D ++ I + G ++EIGAG G LT L L R++ IE D+ Sbjct: 8 RHEYGQNFLCDRRVVADIVKIVSHTTG-PIVEIGAGDGALTLPLQRLN-RQLTAIEIDRX 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L D +S + + DF ++ ++P ++ NLP+++ T L Sbjct: 66 RARRLADRTSA----------EVVGADFLQYRLPTTPHVVVGNLPFHLTTAXLRRLXHG- 114 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPS 198 P W LL Q EV R G +++T W + ++ +S F P Sbjct: 115 ---PGWTDAVLLMQWEVARRXAG------VGGATMMTAQWWPWFEFSLAXKVSADAFRPR 165 Query: 199 PKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P V + ++ P +P + + E F R + L Q L+R L GI Sbjct: 166 PGVDAGLLTITRRREPLVPTADRRRYQALAHEVFTGRGRGLAQILRRHVDRRWLQANGIH 225 Query: 257 TNLRAENLSIEDFC 270 + +LS + + Sbjct: 226 PSALPRDLSAQQWA 239 >gi|34733387|gb|AAN86837.2| Erm(38) [Mycobacterium smegmatis] Length = 386 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL D ++ I E +G +IEIGAG G LT L L AR + +E D + Sbjct: 8 RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTAVEVDAR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +++ + + DF ++ SP ++ NLP+++ T +L + Sbjct: 66 RARRLAQRTARSAPGPASRPTEVVAADFLRYPLPRSPHVVVGNLPFHLTTAILRRLLHG- 124 Query: 142 TWPPFWESLTLLFQKEVGERITA 164 P W + LL Q EV R A Sbjct: 125 ---PGWTTAVLLMQWEVARRRAA 144 >gi|118471619|ref|YP_886024.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium smegmatis str. MC2 155] gi|118172906|gb|ABK73802.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium smegmatis str. MC2 155] Length = 386 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL D ++ I E +G +IEIGAG G LT L L AR + +E D + Sbjct: 8 RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTAVEVDAR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +++ + + DF ++ SP ++ NLP+++ T +L + Sbjct: 66 RARRLAQRTARSAPGPASRPTEVVAADFLRYPLPRSPHVVVGNLPFHLTTAILRRLLHG- 124 Query: 142 TWPPFWESLTLLFQKEVGERITA 164 P W + LL Q EV R A Sbjct: 125 ---PGWTTAVLLMQWEVARRRAA 144 >gi|307092004|gb|ADN28337.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N + +IA ++EIG G G LT+ LL GA KV IEKD++ L+D + Sbjct: 2 DANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 N +++QDDAL EK + S ++I+NLPY++ + +L Sbjct: 61 TFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPIL 101 >gi|207109769|ref|ZP_03243931.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_CA4C1] Length = 157 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 23/135 (17%) Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I TRL+ N + P L ++ QKEV + A+ + LSVL A Sbjct: 1 MPYYIATRLVLNALKD----PKCRGLLVMTQKEVALKFCARDSQ---NALSVLAHAIGDA 53 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQE 228 T++FD+ P F P PKV S+V I L P ESL+K + Sbjct: 54 TLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKA 113 Query: 229 AFGKRRKTLRQSLKR 243 F RKTL +LK+ Sbjct: 114 CFSSPRKTLSNNLKK 128 >gi|18542252|gb|AAL75499.1| ErmA [Staphylococcus aureus] gi|18542254|gb|AAL75500.1| ErmA [Staphylococcus aureus] Length = 180 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 VIEIG+G G+ T+ L+ + +R V IE D + K+ + N +++IQ D LK F Sbjct: 22 VIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEAVNPSEN-IKVIQTDILKFSFP 79 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 K N +I N+PYNI T + + T+ + L+ +K +R+ + + Sbjct: 80 KHIN----YKIYGNIPYNIST----DIVKRITFESQAKYSYLIVEKGFAKRLQNLQRA-- 129 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L +L M+ + P F P P V S +I Sbjct: 130 ---LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 162 >gi|291386470|ref|XP_002709749.1| PREDICTED: transcription factor B2, mitochondrial-like [Oryctolagus cuniculus] Length = 392 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 14 LSHYKIIPKKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 + +++ PK+Y+ L + + IL+ + SL E GPG LTQ LL GA Sbjct: 56 VCKHRLDPKRYVSSRGLAETLVPILRGSQKDPRSL----FSECNPGPGVLTQALLETGA- 110 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV+ +E D+ F P L+ + + +LE++ D K+D K + PI I L N+G Sbjct: 111 KVVALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGI 170 Query: 132 RLL 134 + L Sbjct: 171 KAL 173 >gi|45826066|gb|AAS77676.1| ErmB [Shuttle vector pELS100] gi|45826074|gb|AAS77683.1| ErmB [Shuttle vector pELS200] gi|45826081|gb|AAS77689.1| ErmB [Shuttle vector pLPV111] gi|47420452|gb|AAT27432.1| 23S rRNA methylase [Lactobacillus reuteri] Length = 245 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PYN+ T+++ + Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYNLSTQIIKKVVFESR 118 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + ++ F K + + L +L + + + F P PKV Sbjct: 119 ASDIYLTVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|307091946|gb|ADN28308.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N+ + I + G G ++EIG G G LT L R + ++EKD + L Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLG--QQ 58 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLPY + T L+ + +A Sbjct: 59 FRSDRVELFHIDALNFDLRTLYG-RGPVRIIGNLPYYVSTPLIAKYTAA 106 >gi|5123863|emb|CAA66307.2| 23S rRNA methyltransferase [Streptomyces fradiae] Length = 291 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/270 (24%), Positives = 112/270 (41%), Gaps = 33/270 (12%) Query: 22 KKYMGQNFLLDLNILKKIA------ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 ++ GQNF ++ A ES+G+ D +TV E+G G G +T+ L+ G ++ Sbjct: 28 RRVWGQNFFRSAGSARRFARQLTGAESAGN-DSVTV-EVGPGAGRITKELVRDG-HPIVA 84 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D + L ++ + PN L ++ DD F + P+R I NLP+ GTR+L Sbjct: 85 VEVDPHWADRLAEL--ELPN-LTVVNDD-----FTTWPLPDGPLRFIGNLPFGTGTRMLR 136 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS-PHV 194 ++ P L QK+ +K + YG W T + P Sbjct: 137 RCLALG--PDRCREGVFLLQKQY-----TRKRTGAYGGNLFNAQWEPWYTFRRGLGFPRQ 189 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQ---SLKRLGGE 247 F +P S + P P S ++ ++ F R T+ + +L R G Sbjct: 190 EF-APVPGSDTETLLVRSRPRPLAPWSRHAAYQRFVEDVFNTSRLTIGEAARALDRRAGP 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L A + LR ++++ E + + + T Sbjct: 249 GWLRGARVPPGLRVKDITAEQWADLFHACT 278 >gi|156365624|ref|XP_001626744.1| predicted protein [Nematostella vectensis] gi|156213632|gb|EDO34644.1| predicted protein [Nematostella vectensis] Length = 368 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 43/211 (20%) Query: 9 SLKTILSHYKIIPKKYMGQNF--LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S T++ Y + P+ Y +N+ + D ++ +++A+ ++ G VIE GPG LT+ ++ Sbjct: 34 SRATLIEKYNLKPRSYTVKNYKYITDRDLAERVAKVL-NVQGHCVIEASPGPGMLTRAMI 92 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 GA++VI +E D+ F L+ + S+ + + D K+D + S I P Sbjct: 93 DSGAKQVIGLEPDKIFMEDLRSLQSETNGKFTPLFGDFGKIDPHLVHDESDTKARICRAP 152 Query: 127 YNIGTRLLFNWISADTWP-------------------------------PFWES------ 149 I ++ LF IS W P ES Sbjct: 153 -AIASKDLFKGISPVEWESDETPVKFVGIEGGKTLASTTKILMSYLARVPGKESIFKIGR 211 Query: 150 --LTLLFQKEVGERITAQKNSPHYGRLSVLT 178 L + + ER+ AQ + +Y RLS++ Sbjct: 212 CELLFFYTHDRAERLLAQPGTKYYNRLSIMA 242 >gi|296271439|ref|YP_003654071.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM 43833] gi|296094226|gb|ADG90178.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM 43833] Length = 278 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 27/229 (11%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNF++D + ++ +++ V+E GAG G LT + L R+VI E D Sbjct: 28 RRALSQNFMIDPRAVARVVDAARLSPDDLVVEPGAGYGALT-LALARTCRRVIAYEIDPV 86 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P + ++ D L+ + P ++ N+PY++ T + +W Sbjct: 87 AAGRLAARTRGDPA-VHVVAGDFLRARPPR-----EPFAVVGNIPYHL-TSPIVDWCLRA 139 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV----FFP 197 P + TL+ Q E A+K + YGR S++T RT ++ I+ + F P Sbjct: 140 ---PALSAATLVTQAEY-----ARKRTGGYGRWSLVTV-RTWPGFIWRIAGRIDRSAFRP 190 Query: 198 SPKVTSTVIHFIPHLNPIP----CCLESLKKITQEAFGKRRKTLRQSLK 242 P + S ++ P P L + + + F R +L SL+ Sbjct: 191 MPSIDSAILRI--ERRPAPLVPVSALREYRAMVELGFRGRGGSLYASLR 237 >gi|307091966|gb|ADN28318.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D + Sbjct: 2 DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIEFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 N +++QDDAL EK + ++++NLPY++ + +L ++ + PP Sbjct: 61 TFSN-FDLLQDDALAYLKEKDRDWRD-WKLVSNLPYSVASPILVE-LALGSHPP 111 >gi|90901924|gb|ABE01848.1| Erm(39)po [Mycobacterium porcinum] Length = 246 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 27/250 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D ++ I G +IEIGAG G LT L L R++ IE D++ Sbjct: 12 GQNFLCDRRVIADIVTIVSRTTG-PIIEIGAGDGALTLPLQRLN-RQLTAIEIDRRRARR 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L D +S + + DF K+ ++P ++ NLP+++ T +L + P Sbjct: 70 LADRTSA----------EVVSADFLKYRLPTAPHVVVGNLPFHLTTAMLRRLLHG----P 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPSPKVT 202 W LL Q EV R A G +++T W + + +S F P P V Sbjct: 116 GWTDAVLLMQWEVARRRAA------IGGATMMTAQWWPWFEFGLARKVSADAFRPRPGVD 169 Query: 203 STVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 + ++ P +P + + E F R + Q L+ L GI + Sbjct: 170 AGLLTITRRGEPLVPTADRRRYQALAHEVFTGRGHGMAQILRHHVDRRWLQANGIHPSAL 229 Query: 261 AENLSIEDFC 270 +LS + + Sbjct: 230 PRDLSAQQWA 239 >gi|296119337|ref|ZP_06837905.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295967729|gb|EFG80986.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 264 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 45/234 (19%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D I K + + + G +IEIG G G LT L TL R + +E D Sbjct: 12 GQNFLNDKTIQKAVIDRVKATAG-PIIEIGPGAGALTNHLSTLD-RPLTAVEIDGSLVHH 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 LK HP EI+ D L + +P I+ NLP++ T +L + + A P Sbjct: 70 LKQ--HLHPG-AEIVHGDFLHYRLPE-----TPFVIVGNLPFHQITAMLRHILHA----P 117 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FD------ISP 192 W L+ Q EV R R S+ ATMM FD + Sbjct: 118 RWTHAVLIVQWEVASR-----------RASI-----GGATMMTAQWWPWFDFELGQRVPA 161 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244 H F P+P V ++ P+ E + + + + F R + + Q R+ Sbjct: 162 HSFTPAPSVDGGLLTIARRTRPLLPRQERKAFQSMVHKVFTGRGRGIVQIASRM 215 >gi|325104371|ref|YP_004274025.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM 12145] gi|324973219|gb|ADY52203.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM 12145] Length = 270 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 90/187 (48%), Gaps = 12/187 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P ++ GQ+F +D ++ + G V++IGAG G LT L+ + VI IE D Sbjct: 6 LPVRFTGQHFTIDTILINDAIRLAEIQKGDVVLDIGAGSGFLTVHLVK-HSTNVIAIEND 64 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L+ + N + II +D+ KF ++++N+P+ + + +L + + Sbjct: 65 NRLVSELRSKFRVNKN-VTIIG-----LDYRKFSVPQKNFKVVSNIPFALTSEILKSLMY 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + F++ L+ Q E +++ +K ++ +V + +++I+P F P P Sbjct: 119 TNI--EFFKQGCLIMQFESAKKLVRKK---YFNPYTVFYHTFFEVRFIYEINPESFMPPP 173 Query: 200 KVTSTVI 206 V S ++ Sbjct: 174 TVKSALV 180 >gi|307092000|gb|ADN28335.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D + Sbjct: 2 DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 N +++QDDAL EK + ++++NLPY++ + +L ++ + PP Sbjct: 61 TFSN-FDLLQDDALAYLKEKDRD-RRDWKLVSNLPYSVASPILVE-LALGSHPP 111 >gi|33243437|gb|AAQ01499.1| erythromycin resistance protein [Lactobacillus crispatus] gi|329666418|gb|AEB92366.1| N-methyltransferase [Lactobacillus johnsonii DPC 6026] Length = 245 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PYN+ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYNLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|325123520|gb|ADY83043.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter calcoaceticus PHEA-2] Length = 91 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKVTS V +P+ PI E +L ++ F +RRKTLR SLK + E+ + Sbjct: 6 FNPPPKVTSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAEDGFEK 65 Query: 253 AGIETNLRAENLSIEDFCRITN 274 AG++ R E L++ F + + Sbjct: 66 AGVDPMARPETLTLAQFVALAD 87 >gi|333031235|ref|ZP_08459296.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM 18011] gi|18652656|gb|AAK07612.2|AF319779_1 macrolide-lincosamide-streptogramin B resistance protein [Bacteroides coprosuis DSM 18011] gi|332741832|gb|EGJ72314.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM 18011] Length = 266 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 18/192 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + S TV++IGAG G LT LL KVI IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIKESNINQHDTVLDIGAGKGFLTVHLLK-NVDKVIAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLL 134 D SQH R + I ++V D+ F P ++++N+P+ I + + Sbjct: 63 NDVAL--------SQHL-RKKFIHAQNVQVVSCDYRNFVVPKVPFKVVSNIPFGITSDIF 113 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + + + ++ +++ Q E +++ + K Y L+VL +++I+P Sbjct: 114 SSLMFENV--EYFLCGSIILQSEPAKKLFSSKV---YNPLTVLYHTYYDLKFLYEINPES 168 Query: 195 FFPSPKVTSTVI 206 F P P V S ++ Sbjct: 169 FLPPPTVKSALL 180 >gi|73487002|gb|AAZ76618.1| Erm(38)go [Mycobacterium goodii] Length = 377 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 28/257 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL D ++ I E G +IEIGAG G LT L L R + IE D + Sbjct: 8 RHELGQNFLSDRRVIADIVEIVSHTTG-PIIEIGAGDGALTVPLQGL-VRPLTAIEVDAR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +++ EI+ DF + SP ++ NLP+++ T +L + Sbjct: 66 RAHRLAQRTAK---STEIV-----VADFLRHPLPHSPHVVVGNLPFHLTTAILRRLLHG- 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPS 198 P W + L+ Q EV R A G +++T W + + I F P Sbjct: 117 ---PGWTTAVLVVQWEVARRRAA------VGGATMMTAQWWPWFEFALAQKIPASSFRPR 167 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRLGG---ENLLHQA 253 P V + ++ P+ + + + F R + + Q L+RL N L Sbjct: 168 PAVDAGLLTITRRNRPLVDSADRARYQALVHRVFTGRGRGMAQILRRLPTPVPRNWLRAN 227 Query: 254 GIETNLRAENLSIEDFC 270 G+ N LS + Sbjct: 228 GVAPNALPRQLSAAQWA 244 >gi|307091962|gb|ADN28316.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N + +IA ++EIG G G LT+ LL GA KV IEKD++ L+D + Sbjct: 2 DANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 N +++QDDAL EK + S ++I++LPY++ + +L Sbjct: 61 TFSN-FDLLQDDALAYLKEKDRDWSD-WKLISDLPYSVASPIL 101 >gi|307091882|gb|ADN28276.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +IA ++EIG G G LT+ LL GA KV IEKD++ L+D Sbjct: 2 DANQLARIAALGELSASDKILEIGPGLGPLTEFLLASGA-KVFAIEKDRRLIDFLRDRFV 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 N +++QDDAL EK + S ++I+NLPY++ + +L Sbjct: 61 SVSN-FDLLQDDALAYLNEKDSDWSD-WKLISNLPYSVASPIL 101 >gi|307092012|gb|ADN28341.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 5/114 (4%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++IA ++G ++EIG G G LT L+ GA V+ IE+D++ L+ + Sbjct: 2 DQNQLRRIAAAAGLKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERVFP 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 Q + +++ DDAL D+ K + +++ANLPY+ + +L ++ PP Sbjct: 61 QS-AKFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSAASPILVE-LAGAAMPP 110 >gi|262203305|ref|YP_003274513.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM 43247] gi|262086652|gb|ACY22620.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM 43247] Length = 253 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 34/230 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL+ +++I + + DG ++EIG+G G LT L L R + I+ D + Sbjct: 10 RHELGQNFLVHQPTIQRIVDLIDATDG-PILEIGSGGGALTAHLAALD-RPLTAIDIDAR 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 H R +AL D I +P+ ++ N+P+++ + +L + D Sbjct: 68 LI---------HSLRQRFPHINALHADVLTHV-IDAPV-VVGNIPFHLTSAILRRLLGHD 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH------VF 195 T W LL Q EV R G +++T +A FD + H F Sbjct: 117 T----WTDSVLLVQWEVARRRAG------VGGATMMT---AQAAPWFDFALHGRVPARAF 163 Query: 196 FPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 P+P V ++ P+ P ++ + F R + + L+R Sbjct: 164 RPAPTVDGGILTIARRRRPLIDPRDRRRYERFVGDVFTGRGRGIAAILRR 213 >gi|20069865|ref|NP_613080.1| rRNA methylase [Lactobacillus reuteri] gi|27753648|ref|NP_776205.1| erm44 [Lactobacillus reuteri] gi|27656765|gb|AAO20906.1|AF205068_1 erm44 [Lactobacillus reuteri] gi|1230606|gb|AAC45607.1| rRNA methylase [Lactobacillus fermentum] gi|19918894|gb|AAL99232.1| rRNA methylase [Lactobacillus reuteri] Length = 250 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 29/254 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S +I H +P L K + R ++L +N HQA + + Sbjct: 170 SVLIKLTRHTTDVPDKYWKLYKYFVSKWVNR------EYRQLFTKNQFHQAM--KHAKVN 221 Query: 263 NLSIEDFCRITNIL 276 NLS + ++ +I Sbjct: 222 NLSTITYEQVLSIF 235 >gi|307091992|gb|ADN28331.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I ++ D V+EI G G LT++LL AR V+ IEKD++ L++ Sbjct: 2 DANQLRRIVAAAELTDDDRVLEISPGLGPLTEVLLAKVAR-VLAIEKDRRLIEFLRERFR 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 N LE++ DDAL+ + S +++NLPY++ + +L A+ P Sbjct: 61 AGGN-LELLHDDALRY-LRAQDSDWSDWTVVSNLPYSVASPILVELAQAEKGP 111 >gi|25052799|gb|AAN65178.1| putative methyl transferase [Neisseria gonorrhoeae] Length = 135 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E D+ Sbjct: 7 RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAE-KVNRLHVVEIDRD 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 LK + ++L I + D L+ DF NI I+ NLPYNI T LLF Sbjct: 66 IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKEIVGNLPYNISTPLLF 114 >gi|296230789|ref|XP_002760889.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like [Callithrix jacchus] Length = 398 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 113/284 (39%), Gaps = 53/284 (18%) Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD--- 108 +E GPG LTQ LL +GA KV+ +E D+ F P L+ + +L +I D ++D Sbjct: 101 LECNPGPGILTQALLEVGA-KVVALESDKTFLPHLESLGKNLDGKLRVIYCDFFRMDPKG 159 Query: 109 --------------FEKF------FNISSPIRIIANLP----YNIGTRLLFNWISADTWP 144 F+ + P+++I LP I +L+ N S + Sbjct: 160 TGAIKPPAMASQDLFQTLGLEVVPWKAGIPLKVIGALPIRSERKILWKLIHNLYSCTSIY 219 Query: 145 PFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + E L+++KE + + N Y LSVL ++ +S + F Sbjct: 220 KYGRIELNVLIYEKEFQKLMADPGNPDLYQVLSVLWQVACDIKVLHKVSKILLFKKEFCL 279 Query: 203 STVIH------------FI---PHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQ 239 T H FI P+ N P + + + FGKR+ L + Sbjct: 280 ETESHSELLEPSQEKLYFIQITPYRNLFTDNLTPMSYQVFIHMVKHCFGKRKCRLIDHLR 339 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 SL L +++L Q G + + NL +DF ++ + ++D A Sbjct: 340 SLTPLDAKDILRQIGKKKEDKVTNLYPQDFKQLFETIQSSKDYA 383 >gi|15920668|ref|NP_376337.1| dimethyladenosine transferase [Sulfolobus tokodaii str. 7] gi|15621451|dbj|BAB65446.1| 220aa long hypothetical rRNA adenine N-6-methyltransferase [Sulfolobus tokodaii str. 7] Length = 220 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 32/184 (17%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+FL++ +K+ S L +IEIG G GN+T+ + + +VIE D++F Sbjct: 3 LGQHFLVNEETIKRFV-SYVDLSFRPIIEIGGGKGNITKYI-----KPDVVIEIDKRFSS 56 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L+++ L +I+ +I+++LPY I I D Sbjct: 57 YLRNLVIADARFLPVIRG-----------------QIVSSLPYYITYEFFEEIIRIDQI- 98 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + L L+ Q + ++I N P Y +S + + K + +I P F P P+V ST Sbjct: 99 ---KKLILILQYDFVKKIL---NEPTY--ISFILNYYYKIDVKENIPPWFFKPKPRVYST 150 Query: 205 VIHF 208 ++ F Sbjct: 151 IVLF 154 >gi|261405179|ref|YP_003241420.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10] gi|261281642|gb|ACX63613.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10] Length = 290 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 34/224 (15%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P + Q+ L+ ++ + + + TV++IGAG G LT + L A V+ IE D Sbjct: 15 PSNFSAQHLLISKRLIHDMIDLARIRSTDTVLDIGAGTGALT-LPLAEKAGHVLAIETDP 73 Query: 81 QFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 F L KD S+ + + Q D L++ + +P ++AN+PY+I T ++ Sbjct: 74 AFVDKLLGKMKDSSN-----IRVKQSDFLEIPLPR-----NPFAVVANIPYSITTPIMGK 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDI----- 190 + P + LL + +R TA P + WR M +DI Sbjct: 124 LLECPGLP--LQRAVLLVEMGAAKRFTAVPIQDPR------ILSWR----MQYDIRLVRT 171 Query: 191 -SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 SP F P P+V S ++ P+ K A+G R Sbjct: 172 VSPRHFAPPPQVDSAILTIHRRKKPLIAASHQPKFTALAAYGLR 215 >gi|1185588|gb|AAB40318.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1663] gi|1185596|gb|AAB40325.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1664] gi|1277133|gb|AAC53690.1| erythromycin-resistance protein [Cloning vector pFW15] gi|23986284|gb|AAN05740.1| rRNA methylase [Expression vector pLIV1] Length = 245 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|581701|emb|CAA44667.1| methyltransferase [Streptomyces lincolnensis] Length = 278 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 35/237 (14%) Query: 20 IPKKY-----MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +P +Y +GQNFL+D +I+K I + ++I G++T L LG R V Sbjct: 1 MPSRYGSRQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRR--GHVTLPLSRLG-RPVT 57 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +E D + +K +S++ P ++++ +D L +F + P ++ N+P+++ T + Sbjct: 58 AVELDPRR---VKRLSARAPENVKVVGEDIL-----RFRLPTVPHTVVGNIPFHVTTATM 109 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS--- 191 + A P W S L+ Q EV R G S++T ++ FD S Sbjct: 110 RRILVA----PAWVSAVLVVQWEVARRRAG------IGGCSLVT---AESWPWFDFSVLK 156 Query: 192 --PH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 P F P+P V ++ P+ + ++ F R LR+ L+R+G Sbjct: 157 RVPRFAFRPAPSVDGGILVIERRPEPLVRERREYQAFVRQVFTGRGHGLREILQRIG 213 >gi|307091906|gb|ADN28288.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 14/126 (11%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK---VIVIEKDQQFFPILK 87 +D + L+ IA + + G T++EIG G G LT +L AR+ +I IE D+ L+ Sbjct: 1 VDQSALESIANAVVAWPGDTIVEIGPGRGALTDIL----ARRDNTLIAIEIDKALSEKLR 56 Query: 88 DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 + + + +R+ I+++D L+ + + ++ P ++ N+PY I T +LF + PPF Sbjct: 57 ERYASN-SRVTIVENDVLETNVAEL--VAGPFVVVGNVPYYITTPILFRVLR----PPFP 109 Query: 148 ESLTLL 153 S L Sbjct: 110 RSAVFL 115 >gi|228860921|ref|YP_002842047.1| ErmB [Lactobacillus plantarum] gi|253755557|ref|YP_003028697.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407] gi|314943583|ref|ZP_07850342.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133C] gi|59938856|gb|AAX12187.1| erythromycin ribosome methylase [Enterococcus faecium] gi|219523816|gb|ACL14885.1| ErmB [Lactobacillus plantarum] gi|251818021|emb|CAZ55805.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407] gi|290770977|emb|CBK33767.1| MLS methylase [Streptococcus suis] gi|290770984|emb|CBK33773.1| MLS methylase [Streptococcus pyogenes] gi|309385833|gb|ADO66761.1| ErmB [Enterococcus faecium] gi|313575405|emb|CBR26934.1| MLS methylase [Streptococcus phage phi-SsUD.1] gi|313597730|gb|EFR76575.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133C] gi|319757842|gb|ADV69784.1| ErmB [Streptococcus suis JS14] gi|321156819|emb|CBW38806.1| ermB [Streptococcus pneumoniae] gi|321157419|emb|CBW39398.1| rRNA methylase [Streptococcus pneumoniae] Length = 245 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|256412|gb|AAB23456.1| lincomycin-resistance determinant LmrB=23S rRNA adenine(2058)-N-methyltransferase homolog [Streptomyces lincolnensis, 78-11, Peptide, 278 aa] Length = 278 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 35/237 (14%) Query: 20 IPKKY-----MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +P +Y +GQNFL+D +I+K I + ++I G++T L LG R V Sbjct: 1 MPSRYGSRQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRR--GHVTLPLSRLG-RPVT 57 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +E D + +K +S++ P ++++ +D L +F + P ++ N+P+++ T + Sbjct: 58 AVELDPRR---VKRLSARAPENVKVVGEDIL-----RFRLPTVPHTVVGNIPFHVTTATM 109 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS--- 191 + A P W S L+ Q EV R G S++T ++ FD S Sbjct: 110 RRILVA----PAWVSAVLVVQWEVARRRAG------IGGCSLVT---AESWPWFDFSVLK 156 Query: 192 --PH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 P F P+P V ++ P+ + ++ F R LR+ L+R+G Sbjct: 157 RVPRFAFRPAPSVDGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIG 213 >gi|63022016|ref|YP_232761.1| N-methyltransferase [Streptococcus pyogenes] gi|496516|emb|CAA47093.1| erm2 [Streptococcus pyogenes] gi|3127117|gb|AAC16049.1| erythromycin resistance determinant [Tn917 delivery vector pAJ005] gi|13549399|gb|AAK27828.1| rRNA methylase [TnphoZ mutagenesis vector pMHL120] gi|38707215|gb|AAR27225.1| N-methyltransferase [Streptococcus pyogenes] Length = 253 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 16 SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 72 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 73 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 122 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 123 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 177 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 178 SVLIKLTRHTTDVP 191 >gi|307092036|gb|ADN28353.1| putative rRNA methyltransferase [uncultured bacterium] Length = 119 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 10/114 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKD 88 +D +++IA S G L G TV+EIG G G +T TL AR V+ IE D L+ Sbjct: 1 IDAQAIERIAASLGDLHGHTVVEIGPGAGAITG---TLAARADHVLAIELDNGLAAHLR- 56 Query: 89 ISSQHP-NRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISA 140 +Q P +++ ++Q D L DF + + + NLPY I +++L ++ Sbjct: 57 --TQFPADKVTVLQQDVLNFDFAAASAAAGERLAVAGNLPYGITSQILLKLAAS 108 >gi|256395256|ref|YP_003116820.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila DSM 44928] gi|256361482|gb|ACU74979.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila DSM 44928] Length = 263 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 111/269 (41%), Gaps = 34/269 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL D ++ +I +IE+GAG G LT L L R V +E D + Sbjct: 17 RQELGQNFLADPALIAEIQRLVREQTQGPIIELGAGDGALTGPLSRLN-RPVTALEIDPR 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ + + R ++++ D L+ F + I+ N+P+++ T ++ +S Sbjct: 76 R---VRRLQERFGGRADVVRADVLRYRFPAAEHT-----IVGNIPFHLTTAIIRKLLSER 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG----WRTKATMMFDISPHVFFP 197 W S L+ Q EV R G S+LT W ++ I F P Sbjct: 128 G----WSSAVLIVQWEVARRRAG------VGGASMLTASWWPW-YDFGLVRRIPASAFRP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG------ENL 249 P V + ++ P+P E + ++ F + + + + R G Sbjct: 177 VPSVDAGLLTM--WRRPVPLVEERSGYQTFVKQVFQAPGRGVEEMIARTGRVRRAELREW 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278 + + I ++L+ ED+ R+ ++ D Sbjct: 235 VRWSRIPVRALPKDLAAEDWARLWELVRD 263 >gi|59938858|gb|AAX12188.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 63 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 112 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 113 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 167 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 168 SVLIKLTRHTTDVP 181 >gi|26347035|dbj|BAC37166.1| unnamed protein product [Mus musculus] Length = 160 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 +FQ+E R+ A+ Y RLS+ T + + + + F P PKV S+V+ P Sbjct: 1 MFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKN 60 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIE 267 P P + + + F ++ KTL + K + LL + ++ + E+ SI Sbjct: 61 PPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPEDFSIA 120 Query: 268 DFCRITNILT 277 D +I ILT Sbjct: 121 D--KIQQILT 128 >gi|307091990|gb|ADN28330.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N+ + I + G G ++EIG G G LT L R + ++EKD + L Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLG--QQ 58 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLP+ + T L+ + +A Sbjct: 59 FRSDRVELFHIDALDFDLRTLYG-RGPVRIIGNLPHYVSTPLIAKYTAA 106 >gi|302527546|ref|ZP_07279888.1| dimethyladenosine transferase [Streptomyces sp. AA4] gi|302436441|gb|EFL08257.1| dimethyladenosine transferase [Streptomyces sp. AA4] Length = 260 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 20/157 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++T++S + +GQNFL D ++ + ++ G ++E+ AG G LT L Sbjct: 2 RGVRTLMSAQSFGGRHELGQNFLADPAVIAAVCTAAARTTG-PLVELAAGDGALTVPLSR 60 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 G R + +E D + L + H +++++ D L+ + ++ P ++ NLP+ Sbjct: 61 TG-RPLTAVELDPRRARRLAQRTGGH---VQVVRGDLLR---HRLPDV--PHTVVGNLPF 111 Query: 128 NIGT---RLLFNWISADTWPPFWESLTLLFQKEVGER 161 ++ T R LF P WE LL Q EV R Sbjct: 112 HLTTATLRRLFR-------QPHWELAVLLVQWEVARR 141 >gi|149748941|ref|XP_001490604.1| PREDICTED: similar to transcription factor B2, mitochondrial [Equus caballus] Length = 398 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 14 LSHYKIIPKKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++ ++ P++Y+ L + + +L+ E + L +E GPG LTQ LL GAR Sbjct: 64 VTKCRLEPRRYITSPRLAETLVQVLRGGREKTCQL----FLECNPGPGILTQALLENGAR 119 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 VI +E D+ F P L+ + +LE++ D K+D + PI + L N+G Sbjct: 120 -VIALESDRTFIPHLESLGKNLNGKLEVVHCDFFKLDPTNCGTVKPPIMVSKMLFQNLGI 178 Query: 132 RLL 134 + L Sbjct: 179 QAL 181 >gi|325955700|ref|YP_004286328.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC] gi|325334486|gb|ADZ08234.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC] Length = 245 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PYN+ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYNLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|186909909|gb|ACC94310.1| ErmB [uncultured Enterococcus sp.] Length = 248 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 10 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 66 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 67 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 116 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 117 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 171 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 172 SVLIKLTRHTTDVP 185 >gi|29377810|ref|NP_816938.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis V583] gi|187729653|ref|YP_001798654.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|227518295|ref|ZP_03948344.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis TX0104] gi|228477694|ref|ZP_04062323.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126] gi|255976304|ref|ZP_05426890.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2] gi|256852580|ref|ZP_05557955.1| rRNA methylase [Enterococcus faecalis T8] gi|256959519|ref|ZP_05563690.1| rRNA methylase [Enterococcus faecalis Merz96] gi|257080187|ref|ZP_05574548.1| rRNA methylase [Enterococcus faecalis JH1] gi|292493937|ref|YP_003533080.1| rRNA methyltransferase [Bacillus sp. BS-01] gi|293384636|ref|ZP_06630499.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712] gi|293389670|ref|ZP_06634121.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613] gi|307273762|ref|ZP_07554987.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0855] gi|307283567|ref|ZP_07563750.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0860] gi|307288935|ref|ZP_07568906.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0109] gi|309803307|ref|ZP_07697404.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|309808536|ref|ZP_07702434.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 01V1-a] gi|312907858|ref|ZP_07766843.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 512] gi|312978967|ref|ZP_07790690.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 516] gi|317495460|ref|ZP_07953828.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424] gi|322392769|ref|ZP_08066227.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC 700780] gi|331267237|ref|YP_004326867.1| erythromycin resistance protein; ribosomal RNA adenine N-6-methyltransferaseadenine dimethylase family protein [Streptococcus oralis Uo5] gi|30179806|sp|P20173|ERMB_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|19568826|gb|AAL91926.1|AF480455_1 ErmB [Bacillus cereus] gi|19568828|gb|AAL91927.1|AF480456_1 ErmB [Bacillus cereus] gi|19568830|gb|AAL91928.1|AF480457_1 ErmB [Bacillus cereus] gi|19568832|gb|AAL91929.1|AF480458_1 ErmB [Bacillus cereus] gi|19568836|gb|AAL91931.1|AF480460_1 ErmB [Bacillus cereus] gi|456370|emb|CAA45935.1| erm2 [Streptococcus pyogenes] gi|1532095|gb|AAC44378.1| adenine methylase [Staphylococcus lentus] gi|1835782|gb|AAC71783.1| adenine methylase [Enterococcus faecalis] gi|6273679|emb|CAA73921.1| rRNA methylase [Staphylococcus aureus] gi|21492653|gb|AAA27452.2| Erm(B) [Enterococcus faecalis] gi|29345262|gb|AAO83009.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis V583] gi|31442295|dbj|BAC77345.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|51493758|gb|AAU04869.1| rRNA methylase [Bursa aurealis delivery vector pBursa] gi|67511466|emb|CAI99370.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] gi|67511470|emb|CAI99372.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] gi|67511474|emb|CAI99374.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] gi|87042724|gb|ABD16369.1| rRNA methylase [Streptococcus agalactiae] gi|110556100|dbj|BAE98119.1| rRNA methylase [Enterococcus faecalis] gi|134269486|emb|CAL69907.1| rRNA methylase [Streptococcus pyogenes] gi|145974706|gb|ABQ00061.1| ErmB [Staphylococcus aureus] gi|158148992|dbj|BAF82031.1| rRNA methylase [Staphylococcus aureus] gi|171854437|dbj|BAG16444.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|227074249|gb|EEI12212.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis TX0104] gi|228250583|gb|EEK09794.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126] gi|255969176|gb|EET99798.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2] gi|256712127|gb|EEU27160.1| rRNA methylase [Enterococcus faecalis T8] gi|256950015|gb|EEU66647.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256988217|gb|EEU75519.1| rRNA methylase [Enterococcus faecalis JH1] gi|281334214|gb|ADA61298.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Staphylococcus aureus] gi|291078052|gb|EFE15416.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712] gi|291081011|gb|EFE17974.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613] gi|291276226|gb|ADD91314.1| rRNA methyltransferase [Bacillus sp. BS-01] gi|306500112|gb|EFM69458.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0109] gi|306503591|gb|EFM72832.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0860] gi|306509563|gb|EFM78608.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0855] gi|308164815|gb|EFO67065.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|308168213|gb|EFO70333.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 01V1-a] gi|310626139|gb|EFQ09422.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 512] gi|311288232|gb|EFQ66788.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 516] gi|315154402|gb|EFT98418.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0031] gi|315160679|gb|EFU04696.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0645] gi|315163599|gb|EFU07616.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX1302] gi|316914274|gb|EFV35752.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424] gi|316980281|emb|CBL58180.1| rRNA methylase [Staphylococcus aureus] gi|321144347|gb|EFX39750.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC 700780] gi|321157439|emb|CBW39418.1| rRNA methylase [Streptococcus pneumoniae] gi|326683909|emb|CBZ01527.1| erythromycin resistance protein; ribosomal RNA adenine N-6-methyltransferaseadenine dimethylase family protein [Streptococcus oralis Uo5] gi|739954|prf||2004266G erm2 protein Length = 245 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|2623780|gb|AAB86539.1| erythromycin resistance determinant [Lactobacillus reuteri] Length = 248 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTKI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|182683142|ref|YP_001834889.1| rRNA methylase [Streptococcus pneumoniae CGSP14] gi|182628476|gb|ACB89424.1| rRNA methylase [Streptococcus pneumoniae CGSP14] Length = 245 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|314993276|ref|ZP_07858648.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133B] gi|313592239|gb|EFR71084.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133B] Length = 249 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 12 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 68 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 69 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 118 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 119 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 173 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 174 SVLIKLTRHTTDVP 187 >gi|309777023|ref|ZP_07671992.1| putative rRNA (adenine-N(6)-)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|308915233|gb|EFP61004.1| putative rRNA (adenine-N(6)-)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] Length = 274 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 12/183 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL++ +++++ S VIEIG G G +T +L+ A +V+ +E DQ+ + Sbjct: 7 SQNFLVNKKLVERLISKSNIDVTDYVIEIGPGKGIITD-VLSQHAGEVVAVEYDQELYNN 65 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L S H N I D F K+ ++ +I +N+P+ I T + ++ D P Sbjct: 66 LVRYHS-HDNVTYIFGD------FLKYKLPLNRRYKIFSNIPFQI-TADIIRKLTDDVNP 117 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 P + ++ Q+E ++ + G + + + K + FFPSP V + Sbjct: 118 P--SDINIIIQREAAKKNCGIPLQKYEGFRAAIIKAQYKVEITHSFKRSDFFPSPNVDTV 175 Query: 205 VIH 207 ++H Sbjct: 176 MLH 178 >gi|182684293|ref|YP_001836040.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14] gi|182629627|gb|ACB90575.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14] Length = 261 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|167470195|ref|ZP_02334899.1| dimethyladenosine transferase [Yersinia pestis FV-1] Length = 81 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L +IT +AF +RRKT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 19 LSRITTQAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 74 >gi|84000229|ref|NP_001033216.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus] gi|122138757|sp|Q32LD4|TFB2M_BOVIN RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|81673681|gb|AAI09635.1| Transcription factor B2, mitochondrial [Bos taurus] gi|296479265|gb|DAA21380.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus] Length = 394 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 10/97 (10%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G ++E GPG LT+ LL GAR VI +E D+ F P LK + + RLE+I D K+ Sbjct: 95 GQLILECNPGPGVLTRALLESGAR-VIALESDKNFIPELKSLGNSVNGRLEVIYCDFFKL 153 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 D ++ P+ + + +LF ++ P Sbjct: 154 DPRNHGMVTPPV---------MTSDMLFQYLGVKAHP 181 >gi|59938862|gb|AAX12190.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 35/201 (17%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138 ++SS+ R+ +I D L+ F +I+ N+PY++ T +++F Sbjct: 63 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQIIKKVVFESR 116 Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++D + E TL + +G +L + + + F Sbjct: 117 ASDIYLIVEEGFYKRTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 160 Query: 196 FPSPKVTSTVIHFIPHLNPIP 216 P PKV S +I H +P Sbjct: 161 HPKPKVNSVLIKLTRHTTDVP 181 >gi|307091870|gb|ADN28270.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 5/108 (4%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D +L+ I+ S TVIEIG G G LT+ LL+ GA VI IEKD + L Sbjct: 1 IDEGVLEFISNSLDFKKDETVIEIGPGLGFLTRFLLSHGAS-VIAIEKDPAYVEFLTHYY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + I+ D LK + + P+++ N+PYNI + +L W+ Sbjct: 60 KN--KKFRIVASDVLKTKISELTS-GDPVKVCGNIPYNITSPIL-EWL 103 >gi|145596181|ref|YP_001160478.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica CNB-440] gi|145305518|gb|ABP56100.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica CNB-440] Length = 265 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 29/231 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL+D + ++ ++ ++E+GAG G LT+ LL +R +I E D Sbjct: 15 RRVLSQNFLVDPAAVNRLTRAAQPDPDRLLLEVGAGRGQLTR-LLAARSRHLIAYEVDPV 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P + DF +P ++ N+P+++ T + W A Sbjct: 74 NAAELARSCAGLPT------VTCRQADFLTASPPRAPFDVVGNIPWSL-TSAVVRWCLAA 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-------GWRTKATMMFDISPHV 194 P + TLL Q E A+K S YGR + LT WR + + Sbjct: 127 ---PGLRAATLLTQLEY-----ARKRSGDYGRWTRLTVRSWPEFSWR----LAGRVPRTA 174 Query: 195 FFPSPKVTSTVIHFIPHLNP-IP-CCLESLKKITQEAFGKRRKTLRQSLKR 243 F P+P+V + ++ P +P L + +++ + F +L SL R Sbjct: 175 FRPTPRVDAGILRIERRREPLLPVAALPAYRRMVELGFDGVGGSLAASLGR 225 >gi|47217190|emb|CAG11026.1| unnamed protein product [Tetraodon nigroviridis] Length = 478 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 ++F++D ++ K + + + T+I + GPG LT+ LL G +KV+ +E ++ F P Sbjct: 154 RHFIVDPDLAKLVTQHLQPDNATTIIFDCNPGPGVLTRTLLNSGIQKVVALEGEKFFLPE 213 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+D+ Q +LE++ D K+D N+ P L ++G IS +W Sbjct: 214 LQDLEIQLDGQLEVVHCDFFKLDPIGSGNLKPPAMFTDKLFTDLG-------ISEASW 264 >gi|223932186|ref|ZP_03624190.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591] gi|294623170|ref|ZP_06702052.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317] gi|59938860|gb|AAX12189.1| erythromycin ribosome methylase [Enterococcus faecium] gi|223899167|gb|EEF65524.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591] gi|291597422|gb|EFF28591.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317] gi|295980968|emb|CBJ57216.1| erythromycin ribosome methylase [Streptococcus pneumoniae] Length = 245 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|307092022|gb|ADN28346.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092026|gb|ADN28348.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092028|gb|ADN28349.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092044|gb|ADN28357.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 16/109 (14%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I +++G V+EIG G G LT++LL G R+V+ IEKD + L++ Sbjct: 2 DQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRE--R 58 Query: 92 QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLL 134 ++LE++ DAL K D+ + ++++NLPY++ + +L Sbjct: 59 FQNSKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPIL 100 >gi|305678698|ref|YP_003864117.1| erythromycin ribosome methylase [Enterococcus faecalis] gi|304324949|gb|ADM24829.1| erythromycin ribosome methylase [Enterococcus faecalis] gi|304324991|gb|ADM24870.1| erythromycin ribosome methylase [Enterococcus faecalis] gi|304325033|gb|ADM24911.1| erythromycin ribosome methylase [Enterococcus faecalis] Length = 245 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SALIKLTRHTTDVP 183 >gi|127203|sp|P06573|ERM_STRSA RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150491|gb|AAA25527.1| adenine methylase [Plasmid pAM77] Length = 245 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R S L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRS-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|10956213|ref|NP_053005.1| MSL methylase [Streptococcus agalactiae] gi|115534816|ref|YP_783898.1| MLS methylase [Enterococcus faecalis] gi|169833871|ref|YP_001694729.1| rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) [Streptococcus pneumoniae Hungary19A-6] gi|194398695|ref|YP_002037949.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae G54] gi|293569556|ref|ZP_06680835.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071] gi|298229341|ref|ZP_06963022.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255910|ref|ZP_06979496.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503699|ref|YP_003725639.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|307127298|ref|YP_003879329.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae 670-6B] gi|312904689|ref|ZP_07763842.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0635] gi|313247840|ref|YP_004033002.1| erythromycin resistance protein [Enterococcus faecalis] gi|322388219|ref|ZP_08061823.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC 700779] gi|157834333|pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam) That Confers Macrolide-Lincosamide-Streptogramin Antibiotic Resistance, Nmr, Minimized Average Structure gi|511078|emb|CAA50902.1| MSL methylase [Streptococcus agalactiae] gi|886483|emb|CAA58028.1| adenine methylase [Enterococcus sp.] gi|12956999|emb|CAC29169.1| MLS methylase [Enterococcus faecalis] gi|33357431|gb|AAQ16568.1| macrolide resistance determining protein [Streptococcus hyointestinalis] gi|67043689|gb|AAY63932.1| MLS methylase [Streptococcus cristatus] gi|84616745|emb|CAJ53870.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] gi|102231548|gb|ABF70488.1| erythromycin and macrolide resistance protein [Lactobacillus johnsonii] gi|156788912|gb|ABU96031.1| Erm(B) methylase [Streptococcus pneumoniae] gi|168996373|gb|ACA36985.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Streptococcus pneumoniae Hungary19A-6] gi|169636215|dbj|BAG12485.1| MLS methylase [Streptococcus pneumoniae] gi|169636245|dbj|BAG12514.1| MLS methylase [Streptococcus pneumoniae] gi|169636260|dbj|BAG12527.1| MLS methylase [Streptococcus pneumoniae] gi|194358362|gb|ACF56810.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae G54] gi|291587734|gb|EFF19603.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071] gi|298239294|gb|ADI70425.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|306484360|gb|ADM91229.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae 670-6B] gi|310631974|gb|EFQ15257.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0635] gi|312837007|dbj|BAJ34893.1| erythromycin resistance protein [Enterococcus faecalis] gi|321140891|gb|EFX36392.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC 700779] gi|321156829|emb|CBW38816.1| erm(b) methylase; subname: full=mls methylase; subname: full=rrna adenine n-6-methyltransferase; ec=2.1.1.48; subname: full=erm(b) methylase; subname: full=mls methylase; subname: full=rRNA adenine N-6-methyltransferase; ec=2.1.1.48 [Streptococcus pneumoniae] gi|321156886|emb|CBW38874.1| rRNA methylase [Streptococcus pneumoniae] gi|321157364|emb|CBW39344.1| rRNA methylase [Streptococcus pneumoniae] gi|321157384|emb|CBW39363.1| rRNA methylase [Streptococcus pneumoniae] gi|321157409|emb|CBW39387.1| rRNA methylase [Streptococcus pneumoniae] gi|321157455|emb|CBW39433.1| rRNA methylase [Streptococcus pneumoniae] Length = 245 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|270593172|ref|ZP_06221463.1| dimethyladenosine transferase [Haemophilus influenzae HK1212] gi|270318418|gb|EFA29543.1| dimethyladenosine transferase [Haemophilus influenzae HK1212] Length = 66 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 33/53 (62%) Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 L ++ +AF +RRKTLR +L L L GI+ N RAENL+I D+ R+ N Sbjct: 11 LNRVCSQAFNQRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLAN 63 >gi|291300090|ref|YP_003511368.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis DSM 44728] gi|290569310|gb|ADD42275.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis DSM 44728] Length = 278 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 25/193 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL + + + SG V+EIG G G LTQ + R V+ E D Sbjct: 13 RRRLSQNFLTEPRVAAAVVRLSGVTRADLVVEIGPGRGILTQAIARKAGR-VLAYELD-- 69 Query: 82 FFPIL-KDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 P+L K +++++ + R+ + D L + P I+AN+PY + ++ + Sbjct: 70 --PVLAKRLAARYGDDPRVHCVHRDFLSTSPPR-----EPFSIVANIPYARTSAIVEWCL 122 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GW-RTKATMMFDISPHVF 195 A ++ TL+ Q E A+K S YGR S +T W R + ++ + + F Sbjct: 123 KARE----LDAATLITQLEY-----ARKRSGDYGRWSQVTVESWPRFEWRLLGRVDRYKF 173 Query: 196 FPSPKVTSTVIHF 208 P P+V S ++ Sbjct: 174 DPVPRVDSGILRL 186 >gi|310286444|ref|YP_003937705.1| rRNA adenine N-6-methyltransferase [Escherichia coli] gi|308826773|emb|CBX36034.1| rRNA adenine N-6-methyltransferase [Escherichia coli] Length = 245 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P P+V Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPRVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|59938866|gb|AAX12192.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 63 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 112 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 113 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 167 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 168 SALIKLTRHTTDVP 181 >gi|190410490|ref|YP_001965493.1| putative erythromycin methylase B protein [Pediococcus acidilactici] gi|81176611|gb|ABB59539.1| putative erythromycin methylase B protein [Pediococcus acidilactici] Length = 245 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SALIKLTRHTTDVP 183 >gi|113196886|gb|ABI31743.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196894|gb|ABI31747.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196896|gb|ABI31748.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196898|gb|ABI31749.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|22164060|dbj|BAC07277.1| 23S rRNA methylase [Escherichia coli] Length = 245 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDNHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P P+V Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPRVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|33468439|emb|CAD89787.1| ErmG [Bacteroides ovatus] Length = 244 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + P Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESSAPI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + + L++L +++ I + F P PKV S + Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|225573472|ref|ZP_03782227.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM 10507] gi|225039163|gb|EEG49409.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|294617740|ref|ZP_06697358.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] gi|291595986|gb|EFF27261.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] Length = 245 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|15127842|gb|AAK84314.1|AF368302_1 ErmB [Enterococcus faecium] Length = 237 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|317505058|ref|ZP_07963005.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] gi|315663836|gb|EFV03556.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] Length = 70 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 34/46 (73%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 KK++GQ+FL DLNI K+IA++ + I ++EIG G G LTQ L+T Sbjct: 7 KKHLGQHFLTDLNIAKRIADTVDACPAIPILEIGPGMGVLTQYLVT 52 >gi|307092064|gb|ADN28367.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I ++ V+EIG G G LT++LL A +V+ IE D + L++ Sbjct: 2 DQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRE--- 57 Query: 92 QHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + PN RLE++ DALK+ S +++ANLPY++ + +L Sbjct: 58 RFPNPRLELLHADALKI-LRHVPRDWSDWKLVANLPYSVASPILVE 102 >gi|322801725|gb|EFZ22327.1| hypothetical protein SINV_09620 [Solenopsis invicta] Length = 155 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 T ++ I+ K GQ+ L + +++ + E + V+EIG G GN+T +L A+ Sbjct: 14 TEVARQGILFNKDKGQHILKNPLVIQTMVEKAALRATDVVLEIGPGTGNMTVKMLD-KAK 72 Query: 72 KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 KVI E D + L+ + + ++L+I+ D LK D FF++ +AN+PY I Sbjct: 73 KVIACEIDPRMVAELQKRVQGTVYQSKLQIVLGDVLKSDLP-FFDLC-----VANIPYQI 126 Query: 130 GTRLLFNWIS 139 + L+F +S Sbjct: 127 SSPLVFKLLS 136 >gi|70606438|ref|YP_255308.1| dimethyladenosine transferase [Sulfolobus acidocaldarius DSM 639] gi|68567086|gb|AAY80015.1| ribosomal RNA adenine dimethylase [Sulfolobus acidocaldarius DSM 639] Length = 222 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 34/189 (17%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K +GQ+FL D++I+KK+ +D T VIEIG+G G +T+ L + I IE D Sbjct: 2 KNKLGQHFLNDISIIKKLI---SLVDHSTRPVIEIGSGNGVITKFL-----KPDIAIEID 53 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 H ++I D + ++ +++++LPY I T I Sbjct: 54 VSLI--------NHLRNYQLIIGDGRYLP-------TTRGQVVSSLPYYITTDFFHEAIK 98 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D L L+ QK+ ++IT++ S +S L + K ++ + P F P+P Sbjct: 99 LDN----IRKLVLIVQKDFIDKITSKSTS-----ISYLLNYYYKISLFDIVPPSAFSPNP 149 Query: 200 KVTSTVIHF 208 KV S ++ F Sbjct: 150 KVFSQLVVF 158 >gi|127199|sp|P10738|ERMB_ECOLX RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150715|gb|AAA25634.1| 23S rRNA methylase [Plasmid pIP1527] Length = 245 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKSNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P P+V Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPRVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|127197|sp|P06571|ERMG_BACSH RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|142884|gb|AAA22419.1| rRNA methyltransferase [Lysinibacillus sphaericus] Length = 244 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIV------- 115 Query: 146 FWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 F S T L+ + +R+ S L++L +++ I + F P PKV Sbjct: 116 FESSATISYLIVEYGFAKRLLDTNRS-----LALLLMAEVDISILAKIPRYYFHPKPKVD 170 Query: 203 STVI 206 S +I Sbjct: 171 SALI 174 >gi|138752661|emb|CAM32752.1| MLS methylase [Streptococcus pneumoniae] Length = 245 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|3411260|gb|AAC31204.1| rRNA methylase [Lactobacillus reuteri] Length = 250 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|307092054|gb|ADN28362.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 16/109 (14%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I +++G V+EIG G G LT++LL G R+V+ IEKD + L++ Sbjct: 2 DQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLAEFLRE--R 58 Query: 92 QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLL 134 ++LE++ DAL K D+ + ++++NLPY++ + +L Sbjct: 59 FQNSKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPIL 100 >gi|7595746|gb|AAF64431.1|AF229200_4 erythromycin resistance methylase [Enterococcus faecium] gi|9246953|gb|AAF86219.1|AF242872_2 ErmB [Enterococcus faecium] Length = 248 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PYN+ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYNLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|182684297|ref|YP_001836044.1| rRNA methylase [Streptococcus pneumoniae CGSP14] gi|182629631|gb|ACB90579.1| rRNA methylase [Streptococcus pneumoniae CGSP14] Length = 245 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|255690866|ref|ZP_05414541.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM 17565] gi|260623500|gb|EEX46371.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM 17565] Length = 244 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I N+PYNI T ++ + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGNIPYNISTNIIRKIV------- 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 F S T+ + + E A+ L++L +++ I + F P PKV S + Sbjct: 116 FESSATISYL--IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|189466914|ref|ZP_03015699.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM 17393] gi|189435178|gb|EDV04163.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM 17393] Length = 244 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I N+PYNI T ++ + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGNIPYNISTNIIRKIV------- 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 F S T+ + + E A+ L++L +++ I + F P PKV S + Sbjct: 116 FESSATISYL--IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSVL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|171694431|ref|XP_001912140.1| hypothetical protein [Podospora anserina S mat+] gi|170947164|emb|CAP73969.1| unnamed protein product [Podospora anserina S mat+] Length = 386 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 10/148 (6%) Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 +LE+I D +K+ + +I+N PY I + L+F ++ P L+FQ Sbjct: 100 KLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAMPNPP---RVAVLMFQ 151 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 +E +R+ A+ Y RLSV + + + F P PKV S V+ P + Sbjct: 152 REFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPKVESDVVRIEPLIGSA 211 Query: 216 P--CCLESLKKITQEAFGKRRKTLRQSL 241 + + + AF ++ KTL S Sbjct: 212 RPNIAFDEFDGLLRIAFNRKNKTLNASF 239 >gi|45758647|gb|AAS76623.1| Erm(40) [Mycobacterium mageritense] Length = 251 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 24/143 (16%) Query: 26 GQNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 GQNFL D +I+K ++ ++GS ++EIGAG G LT + LG R + IE D++ Sbjct: 12 GQNFLCDRRVVADIVKIVSHTTGS-----IVEIGAGDGALTVPMQRLG-RPLTAIEIDRR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ H + DF ++ + ++ NLP+++ T +L + + Sbjct: 66 RAERLARRTTAH----------VVTADFLRYRLPPTEHVVVGNLPFHLTTAILRRLLHS- 114 Query: 142 TWPPFWESLTLLFQKEVGERITA 164 P W LL Q EV R A Sbjct: 115 ---PAWTDAVLLMQWEVARRRAA 134 >gi|2924303|emb|CAA57314.1| adenine methylase [Enterococcus hirae] Length = 245 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|315645554|ref|ZP_07898678.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453] gi|315279032|gb|EFU42342.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453] Length = 287 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 17/185 (9%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + QN ++ ++ + + + TV++IGAG G LT L A KV+ IE D Sbjct: 18 FPSQNMIISKRLIHDMIDLARIHPHETVLDIGAGAGALT-FPLAEKAAKVLAIEIDSVLI 76 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L D + N +E+ Q D L+ S P ++AN+PY+I T + + Sbjct: 77 HKLLDKMGERGN-IEVKQCDFLETSLP-----SKPFVVVANIPYSITTPIFGKLLHPAV- 129 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT--MMFDISPHVFFPSPKV 201 P ++ L+ E+ A+ + H R + WR + ++ +SP F P PKV Sbjct: 130 -PMQRAVILV------EKGAAKGFTSHSIRNPRILNWRMQYEIRLVRTVSPDHFAPPPKV 182 Query: 202 TSTVI 206 S ++ Sbjct: 183 DSAIL 187 >gi|159039573|ref|YP_001538826.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola CNS-205] gi|157918408|gb|ABV99835.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola CNS-205] Length = 269 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 29/231 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL+D + ++ ++ ++E+GAG G LT+ LL +R++I E D Sbjct: 15 RRVLSQNFLVDPAAVDRLIRAARPDPNRLLLEVGAGRGQLTR-LLAARSRRLIAYEVDPV 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P + DF P ++ N+P+++ T + W A Sbjct: 74 AGAELARTCADLPT------VTCRRADFLTAPPPRVPYDVVGNIPWSL-TSAVVRWCLAA 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-------GWRTKATMMFDISPHV 194 + + TLL Q E A+K S YGR + LT WR + + Sbjct: 127 S---GLRAATLLTQLEY-----ARKRSGAYGRWTRLTVLNWPEFSWR----LAGRVPRTA 174 Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 F P P+V + ++ P+ L + +++ + F +L SL R Sbjct: 175 FRPVPRVNAGILRIERRREPLLPGAALPAYRRMVELGFDGAGGSLAASLGR 225 >gi|392560|gb|AAA73396.1| adenine methylase [Streptococcus agalactiae] gi|30314839|emb|CAD70614.1| adenine methylase [Plasmid pIlo8] Length = 244 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 22/194 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + K + IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTIELDSHLF-- 63 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 64 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 113 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 114 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 168 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 169 SVLIKLTRHTTDVP 182 >gi|297561218|ref|YP_003680192.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845666|gb|ADH67686.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 266 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 14/208 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ QNFL D +++ SG V+E+G G G LT+ L AR+V+ E D + Sbjct: 16 RRRFSQNFLADPGAARRVVAVSGIGPADLVVEVGPGEGALTR-FLAPAARRVLAYEIDPR 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + + + ++ + DF + ++ N+PY ++ + A Sbjct: 75 LAERLSARYREPASGVRVV-----RADFTRVRPPRGEFHLVGNIPYARTADIVRWCLDAR 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 S TL+ Q E + T + RL+VLT ++ I F P P+V Sbjct: 130 G----LASATLVTQLEYARKRTGGFG--RWSRLTVLTWPEWSWSLAGRIDRQRFRPVPRV 183 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQ 227 S ++ P+ P + +++ + Sbjct: 184 DSGILVLRRRRTPLVDPGRMNGYRRLVE 211 >gi|253571409|ref|ZP_04848815.1| rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|251838617|gb|EES66702.1| rRNA methyltransferase [Bacteroides sp. 1_1_6] Length = 244 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIV------- 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 F S T+ + + E A+ L++L +++ I + F P PKV ST+ Sbjct: 116 FESSATISYL--IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|3800833|gb|AAC69328.1| rRNA methyltransferase PikR1 [Streptomyces venezuelae] Length = 336 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 30/212 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL D ++ + + DG V+EIG G G +T+ L+ V V+E D Sbjct: 17 RRELGQNFLQDDRAVRNLV-THVEGDGRNVLEIGPGKGAITEELVR-SFDTVTVVEMDPH 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + ++ R+ + Q D L DF +I + ++ N+P+ I T++L + + + Sbjct: 75 WAAHVR--RKFEGERVTVFQGDFL--DFRIPRDIDT---VVGNVPFGITTQILRSLLEST 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH------VF 195 W+S L+ Q EV A+K + G + T W ++ + H F Sbjct: 128 N----WQSAALIVQWEV-----ARKRAGRSGGSLLTTSW----APWYEFAVHDRVRASSF 174 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 P P+V V+ P P ES + Q Sbjct: 175 RPMPRVDGGVLTI--RRRPQPLLPESASRAFQ 204 >gi|79946|pir||A27507 DNA adenine methylase (EC 2.1.1.-), ORF2 and ORF3 - Enterococcus faecalis plasmid pAMbeta1 (fragments) Length = 286 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|297720837|ref|NP_001172781.1| Os02g0122900 [Oryza sativa Japonica Group] gi|255670560|dbj|BAH91510.1| Os02g0122900 [Oryza sativa Japonica Group] Length = 131 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 1/70 (1%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 51 TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDA 110 Query: 69 GARKVIVIEK 78 GA V +EK Sbjct: 111 GA-TVFAVEK 119 >gi|854706|gb|AAC37034.1| rRNA methyltransferase [Bacteroides thetaiotaomicron] Length = 244 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESS--- 119 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 +++ L + ++ N L++L +++ I + F P PKV ST+ Sbjct: 120 --ATISYLIVEYGFAKMLLDTNRS----LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|167521732|ref|XP_001745204.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776162|gb|EDQ89782.1| predicted protein [Monosiga brevicollis MX1] Length = 229 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 6/139 (4%) Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 ++TL+FQ+E GER+ A NS H ++S + + + +VF P P+V + V+H Sbjct: 82 AMTLIFQREYGERLFAPPNSLHRAKISAFVQQYCNVSPGYLLPRNVFVPEPRVDTMVVHL 141 Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS--I 266 P + + + F R+ LR ++ L G +A ++ A +L Sbjct: 142 ESKPEPPAVDPAVFEDVLRHLFTTPRRLLRNGMQPLLGVATCAEA---DDVMAAHLPWFD 198 Query: 267 EDFCRITNILTDN-QDIAI 284 D CR ++ D D+A+ Sbjct: 199 RDNCRPKSVHNDQLTDLAL 217 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L +L + + KK + QNF+L K ++G L V+EIG GPG+LT+ +L Sbjct: 10 GLPELLRIFNVRAKKKLSQNFILHQPCADKFVRAAGDLRDRVVVEIGGGPGSLTRAILEA 69 Query: 69 GARK 72 R+ Sbjct: 70 ARRE 73 >gi|323142569|ref|ZP_08077385.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322413002|gb|EFY03905.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 262 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 25 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 81 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 82 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 131 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 132 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 186 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 187 SVLIKLTRHTTDVP 200 >gi|307092024|gb|ADN28347.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092058|gb|ADN28364.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I ++ V+EIG G G LT++LL A +V+ IE D + L++ S Sbjct: 2 DQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRERFS 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 RLE++ DALK+ + + S +++ANLPY++ + +L Sbjct: 61 N--PRLELLHADALKILRHEPRDWSD-WKLVANLPYSVASPILVE 102 >gi|155965920|gb|ABU40942.1| erythromycin resistance methylase [Streptococcus suis] Length = 231 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 5 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 61 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 62 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 111 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 112 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 166 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 167 SVLIKLTRHTTDVP 180 >gi|134285024|gb|ABO69573.1| rRNA methyltransferase [pGERM gene disruption vector] Length = 244 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 22/250 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAGLVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESS--- 119 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 +++ L + ++ N L++L +++ I + F P PKV ST+ Sbjct: 120 --ATISYLIVEYGFAKMLLDTNRS----LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264 I + P + KK E F K + + ++L +N ++A + N+ Sbjct: 174 I--VLKRKPAKMAFKERKK--YETFV--MKWVNKEYEKLFTKNQFNKALKHARIYDINNI 227 Query: 265 SIEDFCRITN 274 S E F + N Sbjct: 228 SFEQFVSLFN 237 >gi|187729640|ref|YP_001798641.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|222142618|ref|YP_002559373.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus JCSC5402] gi|256959343|ref|ZP_05563514.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5] gi|257086939|ref|ZP_05581300.1| rRNA methylase [Enterococcus faecalis D6] gi|261209325|ref|ZP_05923706.1| rRNA methylase [Enterococcus faecium TC 6] gi|269124242|ref|YP_003305352.1| AM7 [Enterococcus faecalis] gi|289567334|ref|ZP_06447709.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF] gi|296450891|ref|ZP_06892640.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP08] gi|296878629|ref|ZP_06902634.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP07] gi|307268297|ref|ZP_07549679.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX4248] gi|313247831|ref|YP_004032993.1| erythromycin resistance protein [Enterococcus faecalis] gi|61223741|sp|P0A4D5|ERM1_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|61223742|sp|P0A4D6|ERM1_CLOPE RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|14211231|gb|AAK57385.1|AF372620_1 ribosomal RNA methylase [glnQ allelic exchange vector pAG101] gi|15384305|gb|AAK96238.1|AF406971_3 erythromycin resistance methylase [Enterococcus hirae] gi|19568834|gb|AAL91930.1|AF480459_1 ErmB [Bacillus cereus] gi|20522042|gb|AAM26278.1|AF435436_1 Erm(B) [Cloning vector pAM434] gi|22595310|gb|AAN02496.1|AF405696_4 erythromycin resistance protein [Reporter vector pALH109] gi|22595315|gb|AAN02500.1|AF405697_4 erythromycin resistance protein [Reporter vector pALH122] gi|22595320|gb|AAN02504.1|AF405698_4 erythromycin resistance protein [Reporter vector pVA838] gi|40558|emb|CAA41221.1| ribosomal RNA methylase [Clostridium perfringens] gi|47020|emb|CAA68299.1| unnamed protein product [Enterococcus faecalis] gi|144783|gb|AAC36955.1| RNA methylase [Shuttle vector pJIR751] gi|208134|gb|AAA73116.1| RNA methylase [unidentified cloning vector] gi|220962|dbj|BAA14385.1| MLS resistance protein [synthetic construct] gi|841202|gb|AAC43480.1| ErmBP [Clostridium perfringens] gi|2745828|gb|AAB94755.1| adenine methylase [Cloning vector pIL252] gi|2773394|gb|AAB96789.1| adenine methylase [Cloning vector pIL253] gi|3132863|gb|AAC16408.1| erythromycin resistance gene [Shuttle vector pJIR1457] gi|3138989|gb|AAD11463.1| rRNA adenine N-6-methyltransferase [synthetic construct] gi|3320598|gb|AAC83650.1| adenine methylase [Integrational vector pMUTIN2] gi|5459333|emb|CAB50726.1| adenin-N6-methylase [Expression vector pERM-ex1] gi|5459338|emb|CAB50711.1| adenin-N6-methylase [Cloning vector pAMY-em1] gi|6979875|gb|AAF34637.1| ErmAM [Shuttle vector pHS17] gi|9963916|gb|AAG09762.1| erythromycin resistance methylase [Staphylococcus intermedius] gi|13442778|dbj|BAB39762.1| Erm [Shuttle vector pVA838] gi|15986369|emb|CAC82333.1| erythromycin methylase [Clostridium difficile] gi|25900787|emb|CAD57776.1| erythromycin resistance protein [Thermosensitive cloning vector pTN1] gi|31322220|gb|AAN87035.1| erythromycin-resistant methylase [Streptococcus gallolyticus] gi|31873066|gb|AAP60029.1| Erm [Cloning vector pMSP3535] gi|34558744|gb|AAQ75101.1| Erm [Shuttle vector pMSP3535-FT] gi|34558751|gb|AAQ75107.1| Erm [Shuttle vector pMSP3535-RT] gi|37595571|gb|AAQ94627.1| 23S rRNA methylase [Arcanobacterium pyogenes] gi|50593498|gb|AAT79488.1| ErmAM [Mutagenesis vector pCAM45] gi|51890404|dbj|BAD42832.1| erythromycin resistance gene [Shuttle vector pUCYIT356N] gi|57547343|gb|AAW52436.1| adenine methylase [plasmid vector pKS1] gi|67511472|emb|CAI99373.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] gi|73665560|gb|AAZ79487.1| erythromycin resistance protein [Mutagenesis vector pNZ5319] gi|78482803|emb|CAI91552.1| rRNA methyltransferase [Clostridium difficile] gi|93007463|gb|ABE97201.1| ribosomal RNA adenine N-6-methyltransferase [Streptococcus thermophilus] gi|134269470|emb|CAL69877.1| Erm(B) [Streptococcus pyogenes] gi|146188922|emb|CAJ21502.1| ErmB protein [Clostridium difficile] gi|158421230|gb|ABW37926.1| Erm [Cloning vector pAMS749-12] gi|159023682|gb|ABW87265.1| ribosomal RNA adenine dimethylase [Insertion vector pGh9:ISS1] gi|171854424|dbj|BAG16431.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|222121387|dbj|BAH18720.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus JCSC5402] gi|222478234|gb|ACM62691.1| ErmC [Shuttle vector pMSP3535H3] gi|225631881|emb|CAR79030.1| adenine methylase [Cloning shuttle vector pA13] gi|226442583|dbj|BAH56452.1| MLS resistance protein [Shuttle vector pLES003] gi|237857402|gb|ACR23640.1| rRNA methylase [synthetic construct] gi|238481675|gb|ACR43891.1| MLS resistance protein [Shuttle vector pMTL82254] gi|256949839|gb|EEU66471.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5] gi|256994969|gb|EEU82271.1| rRNA methylase [Enterococcus faecalis D6] gi|260076697|gb|EEW64443.1| rRNA methylase [Enterococcus faecium TC 6] gi|260161316|emb|CAZ39284.1| MLS methylase [Streptococcus suis] gi|267822506|gb|ACY79534.1| AM7 [Enterococcus faecalis] gi|289160874|gb|EFD08799.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF] gi|290791122|gb|ADD63342.1| rRNA adenine N-6-methyltransferase [Cloning vector pAE1] gi|296260263|gb|EFH07109.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP08] gi|296430436|gb|EFH16278.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP07] gi|299892748|gb|ADJ57693.1| ErmAM [Expression vector pT1NX] gi|306515387|gb|EFM83920.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX4248] gi|312836998|dbj|BAJ34884.1| erythromycin resistance protein [Enterococcus faecalis] gi|314912611|gb|ADT64003.1| erythromycin resistance protein [Group II intron-based directed mutagenesis plasmid pMTL007C-E2] gi|315026359|gb|EFT38291.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX2137] gi|323650671|gb|ADX97419.1| Erm resistance protein [Clostridium acetobutylicum] gi|324029109|gb|ADY16710.1| erythromycin resistance protein [Clostridium acetobutylicum] Length = 245 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|314953278|ref|ZP_07856210.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133A] gi|313594677|gb|EFR73522.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133A] Length = 249 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 12 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 68 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 69 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 118 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 119 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 173 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 174 SVLIKLTRHTTDVP 187 >gi|322495324|emb|CBZ30628.1| putative rRNA dimethyltransferase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 464 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 17 YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 YK+ ++ Q F+L+L ++ ++ ++ + ++E+G G G+LT+ LLT Sbjct: 39 YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 98 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V+ IE D++F P L+ I + N+ + + D LKVD + N + P + AN+ Sbjct: 99 CVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLNSAFPHFVKANV 154 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 15/174 (8%) Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWP-----PFWESLTLLF-QKEVGERITAQKN 167 N ++ + +IANLP+ I T LL + +AD F +F Q+EV ERI A Sbjct: 255 NGNAKVEVIANLPFEIITELLMRY-AADCSQHRGLFAFGRVPVHVFTQREVAERILAPAG 313 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 S + RLSVL + ++P +V ++ P P+ L++ I Sbjct: 314 SVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHGLDASTLIHF 373 Query: 228 EAF----GKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRIT 273 G R T+ +SL R L L + ++ + +LS+ + R+ Sbjct: 374 TNLLMKPGLRAATVHKSLSRFAPAELVQYMLQELRMDGAMTVLDLSVVEVTRLA 427 >gi|307091984|gb|ADN28327.1| putative rRNA methyltransferase [uncultured bacterium] Length = 114 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 7/87 (8%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V+EIGAGPG +T L G R +I IE D ++ L++ +HP R+ I+ D L + Sbjct: 17 GDLVVEIGAGPGAITFALARRGLR-IIAIEPDPEWAKRLRERVGEHP-RIRIVNADFLSI 74 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLL 134 + + P R++ +LP+ T +L Sbjct: 75 ELP-----AEPFRVVGSLPFGRTTDML 96 >gi|146100568|ref|XP_001468894.1| rRNA dimethyltransferase [Leishmania infantum] gi|134073263|emb|CAM71986.1| putative rRNA dimethyltransferase [Leishmania infantum JPCM5] Length = 463 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 17 YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 YK+ ++ Q F+L+L ++ ++ ++ + ++E+G G G+LT+ LLT Sbjct: 38 YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 97 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V+ IE D++F P L+ I S N+ + + D LKVD + + P + AN+ Sbjct: 98 CVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPHFVKANI 153 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 9/147 (6%) Query: 114 NISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWE----SLTLLFQKEVGERITAQKNS 168 N ++ + +IANLP+ I T LL + + + + + Q+EV ERI A S Sbjct: 254 NGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREVAERILAPAGS 313 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228 + RLSVL + ++P +V ++ P P+ L++ I Sbjct: 314 VQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHGLDASTLIHFT 373 Query: 229 AF----GKRRKTLRQSLKRLGGENLLH 251 G R T+ +SL R L+H Sbjct: 374 NLLMKPGLRAATVHKSLSRFAPAELVH 400 >gi|322502902|emb|CBZ37984.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 463 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 17 YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 YK+ ++ Q F+L+L ++ ++ ++ + ++E+G G G+LT+ LLT Sbjct: 38 YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 97 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V+ IE D++F P L+ I S N+ + + D LKVD + + P + AN+ Sbjct: 98 CVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPHFVKANI 153 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 9/147 (6%) Query: 114 NISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWE----SLTLLFQKEVGERITAQKNS 168 N ++ + +IANLP+ I T LL + + + + + Q+EV ERI A S Sbjct: 254 NGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREVAERILAPAGS 313 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228 + RLSVL + ++P +V ++ P P+ L++ I Sbjct: 314 VQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHGLDASTLIHFT 373 Query: 229 AF----GKRRKTLRQSLKRLGGENLLH 251 G R T+ +SL R L+H Sbjct: 374 NLLMKPGLRAATVHKSLSRFAPAELVH 400 >gi|307092062|gb|ADN28366.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++IA ++ ++EIG G G LT L+ GA V+ IE+D++ L+ Sbjct: 2 DQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERAFP 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 Q + +++ DDAL D+ K + +++ANLPY++ + +L ++ PP Sbjct: 61 QS-AKFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSVASPILVE-LAGAAMPP 110 >gi|156633671|gb|ABU90832.1| rRNA adenine N-6-methyltransferase [Shuttle vector pMTL007] Length = 257 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 20 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 76 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 77 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 126 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 127 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 181 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 182 SVLIKLTRHTTDVP 195 >gi|157363926|ref|YP_001470693.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae TMO] gi|157314530|gb|ABV33629.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae TMO] Length = 248 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 14/183 (7%) Query: 26 GQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQ+FL D + K+ E S + V+EIGAG G +T LL G + V+ E DQ+ Sbjct: 5 GQHFLNDKSTAIKLVELISHDVSNRRVVEIGAGKGFITGFLLQAGFQ-VLAYEIDQK--- 60 Query: 85 ILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + K + + + L++ D L+ E+ NI+ I ++PY I ++++ I Sbjct: 61 LAKQLCQKFASPGLKVYVKDFLQSTPEEIENIN---LCIGSIPYQISSKIIIKLIELG-- 115 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 ++ + L+ QKE E++ A+ Y ++VL + ++ F P+PKV S Sbjct: 116 ---FQKVVLIVQKEFAEKLVAEPGEKRYSFITVLAQSFYDVQKVSNLPKSCFSPAPKVDS 172 Query: 204 TVI 206 ++ Sbjct: 173 AIL 175 >gi|31321898|gb|AAK68630.1| erythromycin resistance protein [synthetic construct] Length = 251 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 29/254 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S +I H +P L + R ++L +N HQA + + Sbjct: 170 SVLIKLTRHTTDVPDKYWKLYTYFVSKWVNR------EYRQLFTKNQFHQAM--KHAKVN 221 Query: 263 NLSIEDFCRITNIL 276 NLS + ++ +I Sbjct: 222 NLSTVTYEQVLSIF 235 >gi|32470479|ref|NP_863164.1| erythromycin resistance transferase [Enterococcus faecium] gi|69244936|ref|ZP_00603126.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO] gi|257880618|ref|ZP_05660271.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933] gi|257883423|ref|ZP_05663076.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502] gi|257892145|ref|ZP_05671798.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410] gi|257895032|ref|ZP_05674685.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408] gi|258615894|ref|ZP_05713664.1| erythromycin resistance transferase [Enterococcus faecium DO] gi|260558614|ref|ZP_05830804.1| rRNA methylase [Enterococcus faecium C68] gi|309775385|ref|ZP_07670389.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|314940046|ref|ZP_07847232.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a04] gi|314948330|ref|ZP_07851721.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0082] gi|319935238|ref|ZP_08009677.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1] gi|320152807|ref|YP_004172630.1| ErmB [Enterococcus faecium] gi|11991160|gb|AAG42227.1|AF299292_1 erythromycin resistance methylase [Staphylococcus intermedius] gi|21886748|gb|AAM77891.1|AF516335_11 ermB methylase [Enterococcus faecium] gi|9963914|gb|AAG09761.1| erythromycin resistance methylase [Staphylococcus intermedius] gi|28849340|gb|AAO52847.1| erythromycin resistance transferase [Enterococcus faecium] gi|68196102|gb|EAN10533.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO] gi|257814846|gb|EEV43604.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933] gi|257819081|gb|EEV46409.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502] gi|257828505|gb|EEV55131.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410] gi|257831411|gb|EEV58018.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408] gi|260075352|gb|EEW63664.1| rRNA methylase [Enterococcus faecium C68] gi|281336200|gb|ADA62749.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Enterococcus faecium] gi|308916861|gb|EFP62597.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|313640723|gb|EFS05303.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a04] gi|313645247|gb|EFS09827.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0082] gi|319739759|gb|ADV60077.1| ErmB [Enterococcus faecium] gi|319809888|gb|EFW06276.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1] gi|323464898|gb|ADX77051.1| rRNA adenine N-6-methyltransferase [Staphylococcus pseudintermedius ED99] Length = 245 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|314997282|ref|ZP_07862255.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a01] gi|313588632|gb|EFR67477.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a01] Length = 249 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 12 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 68 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 69 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 118 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 119 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 173 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 174 SVLIKLTRHTTDVP 187 >gi|113196880|gb|ABI31740.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196884|gb|ABI31742.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196888|gb|ABI31744.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196892|gb|ABI31746.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|40807669|gb|AAR92235.1| Erm(39) [Mycobacterium fortuitum] Length = 246 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 27/222 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D ++ I G ++EIGAG G LT L LG R + IE D Sbjct: 12 GQNFLRDRRVVGDIVRMVSHTAG-PIVEIGAGDGALTLPLQRLG-RPLTAIEIDLHRARR 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L D ++ E+I D L+ + +P ++ NLP+++ T +L + + Sbjct: 70 LADRTTA-----EVIATDFLRYRLPR-----TPHVVVGNLPFHLTTAILRRLLHENG--- 116 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPSPKVT 202 W LL Q EV R G +++T W + + +S F P P V Sbjct: 117 -WTDAILLVQWEVARRRAG------VGGATMMTAQWWPWFEFGLARKVSADAFRPRPSVD 169 Query: 203 STVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLK 242 + ++ P +P + + + F R + L Q L+ Sbjct: 170 AGLLTIQRRAEPLLPWADRRAYQALVHRVFTGRGRGLAQILR 211 >gi|127202|sp|P21236|ERM_STRPN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=ErmAM; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|133919252|emb|CAL92507.1| MLS methylase [Streptococcus pneumoniae] gi|162286810|emb|CAP17168.1| erythromycin ribosome methylase [Streptococcus pneumoniae] Length = 245 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|239928180|ref|ZP_04685133.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291436510|ref|ZP_06575900.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291339405|gb|EFE66361.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 259 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 17/187 (9%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITV---IEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + + QNFL D ++ A + G V +E+GAG G LT +L L R++ E D Sbjct: 9 RALSQNFLADRATARRFARLAVP-HGEPVPLLLEVGAGKGALTDVLAPL-CRELHAYEID 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P L+ S P+ + ++ DF +P + N+P++ T + +W Sbjct: 67 PRLVPTLRGRFSGTPH-VRVV-----GADFLAAHPPRTPFAVAGNVPFS-RTAAVVDWCL 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P TLL Q E + T + RL+VLT R + ++ + F P P Sbjct: 120 RA---PRLTDATLLTQLEYARKRTGDHG--RWTRLTVLTWPRHEWRLLARVDRRSFRPVP 174 Query: 200 KVTSTVI 206 +V + V+ Sbjct: 175 RVDAGVV 181 >gi|67511468|emb|CAI99371.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] Length = 245 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|113196878|gb|ABI31739.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SALIKLTRHTTDVP 183 >gi|126699621|ref|YP_001088518.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630] gi|126699626|ref|YP_001088523.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630] gi|5019745|gb|AAD37840.1|AF109075_2 rRNA methyltransferase Erm1B [Clostridium difficile] gi|5019748|gb|AAD37843.1|AF109075_5 rRNA methyltransferase Erm2B [Clostridium difficile] gi|15986374|emb|CAC82337.1| erythromycin methylase [Clostridium difficile] gi|115251058|emb|CAJ68889.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile] gi|115251063|emb|CAJ68894.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile] Length = 245 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SALIKLTRHTTDVP 183 >gi|59938864|gb|AAX12191.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 63 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 112 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 113 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 167 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 168 SVLIKLTRHTTDVP 181 >gi|113196882|gb|ABI31741.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196890|gb|ABI31745.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|23098376|ref|NP_691842.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831] gi|22776602|dbj|BAC12877.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831] Length = 244 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 15/180 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + VIEIG+G G+ T+ L+ + +R V IE D+ + Sbjct: 10 QNFITSKKHVKEILDHTSINKQDNVIEIGSGKGHFTKELVKM-SRWVHSIEIDEDLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + N +++I D LK +F K + +I N+P+NI T ++ I++++ F Sbjct: 69 QKAVKPFQN-IKVIHTDILKFNFHK----NKDYKIFGNIPFNISTDIV-KKIASESQSKF 122 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L+ +K +R+ K + L +L ++ + F P P V S +I Sbjct: 123 S---YLIVEKGFAKRLQNTKRA-----LGLLLMVEMDIKILTKVPRTYFHPRPSVDSVLI 174 >gi|307092040|gb|ADN28355.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 16/111 (14%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D L++I +++G V+EIG G G LT++LL G R+V+ IEKD + L++ Sbjct: 2 DQTQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRE--R 58 Query: 92 QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++LE++ DAL K D+ + ++++NLPY++ + +L Sbjct: 59 FQNSKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPILVE 102 >gi|149003646|ref|ZP_01828511.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] gi|147758378|gb|EDK65378.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] Length = 73 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEV +RI+AQ N+ YG LS+ + A + F + VF P+P V S ++ + Sbjct: 1 MMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRP 60 Query: 213 NP 214 P Sbjct: 61 EP 62 >gi|297156444|gb|ADI06156.1| rRNA-adenine-N6-methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 277 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 34/246 (13%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + ++ + QNFL+D + ++ ++ ++E+G G G LT+ L R++I E D Sbjct: 22 LARRTLSQNFLVDPAAVARVVRAARPRHDGLLVEVGMGKGALTEALAPR-CRELIGYEID 80 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGTRLLFN 136 + P L RL + ++V + F P+ ++ N+PY + ++ Sbjct: 81 RHLIPGL---------RLRLAAHSHVRVVHQDFLTARPPLEPFAVVGNVPYARTSEIVDW 131 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------I 190 + A P S T L Q E A+K + YGR S+LT ++ FD + Sbjct: 132 CLRA----PRLTSATFLTQLEY-----ARKRTGDYGRWSLLT---VRSWPDFDWQLCGRV 179 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 F P P+V S ++ P+ + +++ + F TL SL+R Sbjct: 180 PRGAFRPVPRVDSGILRLTRRPRPLLTGAAERAAYERMVELGFSGVGGTLYASLRRAHPA 239 Query: 248 NLLHQA 253 L +A Sbjct: 240 RRLDRA 245 >gi|237710832|ref|ZP_04541313.1| rRNA methylase [Bacteroides sp. 9_1_42FAA] gi|317474076|ref|ZP_07933354.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] gi|229455554|gb|EEO61275.1| rRNA methylase [Bacteroides sp. 9_1_42FAA] gi|316909759|gb|EFV31435.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] Length = 245 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138 ++SS+ R+ +I D L+ F +I+ ++PY++ T +++F Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESH 118 Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++D + E TL + +G +L + + + F Sbjct: 119 ASDIYLIVAEGFYKGTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 162 Query: 196 FPSPKVTSTVIHFIPHLNPIP 216 P PKV S +I H +P Sbjct: 163 HPKPKVNSVLIKLTRHTTDVP 183 >gi|237725694|ref|ZP_04556175.1| erythromycin resistance determinant [Bacteroides sp. D4] gi|298385271|ref|ZP_06994830.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14] gi|229435502|gb|EEO45579.1| erythromycin resistance determinant [Bacteroides dorei 5_1_36/D4] gi|298262415|gb|EFI05280.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14] Length = 253 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 16 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 72 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138 ++SS+ R+ +I D L+ F +I+ ++PY++ T +++F Sbjct: 73 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESH 126 Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++D + E TL + +G +L + + + F Sbjct: 127 ASDIYLIVEEGFYKGTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 170 Query: 196 FPSPKVTSTVIHFIPHLNPIP 216 P PKV S +I H +P Sbjct: 171 HPKPKVNSVLIKLTRHTTDVP 191 >gi|87159879|ref|YP_492693.1| rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87125853|gb|ABD22972.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 244 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + E +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYEFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|307091950|gb|ADN28310.1| putative rRNA methyltransferase [uncultured bacterium] Length = 119 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDI 89 +D N+ +KIA+S V+EIG G G LT+ L R+++++E D + ++++ Sbjct: 1 IDPNLQRKIADSIAPTADDEVLEIGPGRGALTRHLAP-RVRRLVLVELDNELARRLIEEY 59 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +S + + ++ L + E + + +++I N+PYNI T ++F+ + P Sbjct: 60 ASD--DAVHVVHGSVLDIALEDVSSDPARLKVIGNIPYNITTPIIFHLLEHRPRP 112 >gi|37962668|gb|AAR05653.1| ErmB [Bacteroides uniformis] Length = 245 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138 ++SS+ R+ +I D L+ F +I+ ++PY++ T +++F Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESH 118 Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++D + E TL + +G +L + + + F Sbjct: 119 ASDIYLIVEEGFYKGTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 162 Query: 196 FPSPKVTSTVIHFIPHLNPIP 216 P PKV S +I H +P Sbjct: 163 HPKPKVNSVLIKLTRHTTDVP 183 >gi|82749774|ref|YP_415516.1| rRNA methylase [Staphylococcus saprophyticus] gi|82653299|emb|CAJ43792.1| rRNA methylase [Staphylococcus saprophyticus] Length = 244 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 23/185 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141 ++ H N +++ D L+ F K + +I N+PYNI T +++F I+ + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVVFESIADE 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L+ + E +R+ K S L++L +++ + F P PKV Sbjct: 123 SY--------LIVEYEFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169 Query: 202 TSTVI 206 S++I Sbjct: 170 NSSLI 174 >gi|307092048|gb|ADN28359.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 16/109 (14%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I +++G V+EIG G G LT++L G R+V+ IEKD + L++ Sbjct: 2 DQNQLRRIVDAAGLPQTDKVLEIGPGLGPLTELLPENG-REVLAIEKDARLVEFLRERFQ 60 Query: 92 QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLL 134 ++LE++ DAL K D+ + ++++NLPY++ + +L Sbjct: 61 N--SKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPIL 100 >gi|119571769|gb|EAW51384.1| dimethyladenosine transferase, isoform CRA_a [Homo sapiens] Length = 152 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P ++L+++ D LK D FF+ +ANLPY + + ++S Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQV----CYTYVSKRI 142 Query: 143 WPP 145 PP Sbjct: 143 CPP 145 >gi|23499331|gb|AAN37395.1| erythromycin-resistant methylase [Streptococcus pyogenes] Length = 238 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K ++ +I N+PYNI T ++ I+ D+ + Sbjct: 69 KKAVESFQN-IKVIHEDILKFSFPK----NTDYKIFGNIPYNISTDIV-KKIAFDSQAKY 122 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L+ ++ +R+ + + L +L ++ + F P P V S +I Sbjct: 123 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174 >gi|269839605|ref|YP_003324297.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC BAA-798] gi|269791335|gb|ACZ43475.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC BAA-798] Length = 331 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 19/252 (7%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 ++ QNFL ++ + +SS V EIG G G +T+ L R+V+ IEKD Sbjct: 48 FLSQNFLRSRQLVDYLLQSSDIGPEDIVYEIGPGRGIITERLARR-CREVVAIEKDPSLV 106 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ + PN L +++ D L+ D + S ++ +N P++I +++ A Sbjct: 107 ARLRTELADLPNVL-VLEGDFLEHDLPR-----SRYKVFSNPPFSITAQIVQKLTGAPRP 160 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P E L+ Q+E R +P SVL ++ + F P P V Sbjct: 161 P---EDTYLIVQQEAAWRYLG---TPRETLSSVLLKADFVPSITYRFRREDFHPHPGVEV 214 Query: 204 TVIHFI-PHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL----KRLGGENLLHQAGIET 257 ++ + +P+P + + + F R +L+++L R G + L + + Sbjct: 215 VMLRLLRREADPLPSGMRQVYRDFVTYGFTAWRPSLKETLGPLFARSGVDRLWKRLDLRP 274 Query: 258 NLRAENLSIEDF 269 + +L+ E + Sbjct: 275 DATPTSLAFEQW 286 >gi|149409344|ref|XP_001510710.1| PREDICTED: similar to mitochondrial transcription factor b1, partial [Ornithorhynchus anatinus] Length = 156 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCL 219 R+TA S RLS++ + F I F P P+V VIHF P + P I Sbjct: 1 RLTASTGSRQRSRLSIMAQYLCNVQNCFTIPGRAFLPKPEVDVGVIHFTPLVEPQISQPF 60 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF 269 + ++K+ Q F RRK + + L + +L A ++ LR LSI F Sbjct: 61 KLVEKVVQNVFQFRRKYCYKGVGNLFPNTQRLERTKEMLMVADVDPTLRPGQLSILQF 118 >gi|307092060|gb|ADN28365.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++IA ++ ++EIG G G LT L+ GA V+ IE+D++ L+ + Sbjct: 2 DQNQLQRIAAAAELKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERVFP 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 Q + +++ DDA D+ K + +++ANLPY++ + +L ++ PP Sbjct: 61 QS-AKFKLLHDDA--PDYVKKNRDWAGWKLVANLPYSVASPILVE-LAGAAMPP 110 >gi|330835850|ref|YP_004410578.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4] gi|329567989|gb|AEB96094.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4] Length = 217 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 37/186 (19%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL+D ++++KI+++ + +IEIG G GNL++++ + IE DQ+ Sbjct: 4 SQNFLVDKDVIRKISDNIST--ERPLIEIGCGKGNLSEVV-----SPDLCIEIDQRLLSF 56 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI---RIIANLPYNIGTRLLFNWISADT 142 LK+ + IQ DA K+ P+ +II++LPY+I I + Sbjct: 57 LKNYNP--------IQGDARKL----------PVLRGQIISSLPYSITYDFFMEIIKING 98 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 L L+ Q++ ++ + P + +S + + + +F I P F P+P++ Sbjct: 99 ----ISRLLLILQEDFVNKVI---DYPTF--ISFILNYYFEINKLFVIPPSSFRPAPRIF 149 Query: 203 STVIHF 208 S ++ Sbjct: 150 SALVSL 155 >gi|224026271|ref|ZP_03644637.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM 18228] gi|224019507|gb|EEF77505.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM 18228] Length = 244 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIV------- 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 F S T+ + + E A+ L++L +++ I + F P PKV S + Sbjct: 116 FESSATISYL--IVEYGFAKGLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|317480612|ref|ZP_07939700.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36] gi|316903238|gb|EFV25104.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36] Length = 244 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESS--- 119 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 +++ L + ++ N L++L +++ I + F P PKV S + Sbjct: 120 --ATISYLIVEYGFAKMLLDTNRS----LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|307091988|gb|ADN28329.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 7/107 (6%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++IA++ V+EIG G G LT++LL A +VI IEKD + +L++ + Sbjct: 2 DQNQLRRIADAGVLAKTDRVLEIGPGLGPLTELLLE-RAGQVIAIEKDLRLVTVLRERFA 60 Query: 92 QHPNRLEIIQDDALKV--DFEKFFNISSPIRIIANLPYNIGTRLLFN 136 N LE+ DAL V D + ++ +++ANLPY++ + +L Sbjct: 61 STGN-LELQHADALVVVKDHTRDWH---DWKLVANLPYSVASPILVE 103 >gi|307091908|gb|ADN28289.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 18/128 (14%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-- 88 +D ++ ++IA + G+ G V+++GAG G LT L GAR V+ +E D PI D Sbjct: 1 VDRSLARRIAATVGA--GEVVLDLGAGTGALTIPLARAGAR-VVAVEAD----PIWADRL 53 Query: 89 ----ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + +E++ D L+V S P R+++N PY I T LL + Sbjct: 54 SGRLVGAGLSGTVELVVGDILEVPLP-----SEPYRVVSNPPYGITTELLRRLLERPELG 108 Query: 145 PFWESLTL 152 P+ L L Sbjct: 109 PYRADLLL 116 >gi|307092010|gb|ADN28340.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 6/104 (5%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I +++G V+EIG G G LT++LL A +V+ IEKD + L+ Sbjct: 2 DQNQLRRIVDAAGLSANDKVLEIGPGLGPLTEILLE-KANEVLAIEKDTRLVEFLRG-HF 59 Query: 92 QHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 Q+P +L++ DAL DF K S ++++NLPY++ + +L Sbjct: 60 QNP-KLQLHHADAL--DFLKSEGHDWSDWKVVSNLPYSVASPIL 100 >gi|212694246|ref|ZP_03302374.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855] gi|212662747|gb|EEB23321.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855] Length = 218 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 15/156 (9%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 + EIGAG G+ T L+ V IE D + + ++ +PN +I+ DD LK F Sbjct: 8 IFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEVTRNKLLNYPN-YQIVNDDILKFTFP 65 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 +P +I N+PYNI T ++ + F S T+ + + E A+ Sbjct: 66 S----HNPYKIFGNIPYNISTNIIRKIV-------FESSATISYL--IVEYGFAKSLLDT 112 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L++L +++ I + F P PKV S +I Sbjct: 113 NRSLALLLMAEVDISILAKIPRYYFHPKPKVDSALI 148 >gi|94995100|ref|YP_603198.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes MGAS10750] gi|282882751|ref|ZP_06291358.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B] gi|304439175|ref|ZP_07399093.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|307067521|ref|YP_003876487.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200] gi|313892158|ref|ZP_07825751.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII 345-E] gi|326802744|ref|YP_004320562.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] gi|2190972|gb|AAB60941.1| erythromycin resistance methylase [Streptococcus pyogenes] gi|94548608|gb|ABF38654.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes MGAS10750] gi|215263203|emb|CAQ56289.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] gi|281297412|gb|EFA89901.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B] gi|304372307|gb|EFM25895.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|306409058|gb|ADM84485.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus pneumoniae AP200] gi|313119296|gb|EFR42495.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII 345-E] gi|326650330|gb|AEA00513.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] Length = 243 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K ++ +I N+PYNI T ++ I+ D+ + Sbjct: 69 KKAVEPFQN-IKVIHEDILKFSFPK----NTDYKIFGNIPYNISTDIV-KKIAFDSQAKY 122 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L+ ++ +R+ + + L +L ++ + F P P V S +I Sbjct: 123 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174 >gi|307091920|gb|ADN28295.1| putative rRNA methyltransferase [uncultured bacterium] Length = 122 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 IL +I E++ TV E+G G G +T LL R VI +E D+ L++ Sbjct: 5 ILDRIVEAADLSPSSTVAEVGPGLGVVTTELLQRTGR-VIAVEIDENLCRHLEERFGDRE 63 Query: 95 NRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNWISADTWPP 145 N L ++ +D LK+ + + P ++ NLPY I +L +++ +D PP Sbjct: 64 N-LNLVCNDILKISPREILDAGDAEQPYTLVGNLPYYITAPILRHFLESDCQPP 116 >gi|330938462|gb|EGH42069.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 90 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ V Sbjct: 4 QYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLDV 62 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDA 104 +E D+ PIL + PN + Q DA Sbjct: 63 VELDKDLIPILNGQFASKPN-FNLHQGDA 90 >gi|307092046|gb|ADN28358.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++IA ++ ++EIG G G LT L+ GA V+ IE+D++ L+ + Sbjct: 2 DQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERVFP 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 Q + ++ DDAL D+ K + +++ NLPY++ + +L ++ PP Sbjct: 61 QS-AKFKLPHDDAL--DYVKKNRDWAGWKLVVNLPYSVASPILVE-LAGTAMPP 110 >gi|67974731|gb|AAY84558.1| erythromycin resistance methylase [Helcococcus kunzii] Length = 176 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 4 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 62 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K ++ +I N+PYNI T ++ I+ D+ + Sbjct: 63 KKAVEPFQN-IKVIHEDILKFSFPK----NTDYKIFGNIPYNISTDIV-KKIAFDSQAKY 116 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L+ ++ +R+ + + L +L ++ + F P P V S +I Sbjct: 117 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 168 >gi|256784390|ref|ZP_05522821.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces lividans TK24] gi|289768269|ref|ZP_06527647.1| lincomycin resistance methylase [Streptomyces lividans TK24] gi|153346|gb|AAA26779.1| lincomycin resistance methylase [Streptomyces lividans] gi|289698468|gb|EFD65897.1| lincomycin resistance methylase [Streptomyces lividans TK24] Length = 260 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 21/190 (11%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNFL D +++A + G ++E+GAG G LT+ L +R++ E D Sbjct: 9 RTLSQNFLADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P L+ ++ P+ + ++ D L + +P + N+P++ T + +W Sbjct: 68 RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSR-TADIVDWCLT 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197 P TLL Q E A+K + YGR L+VLT R + ++ + F P Sbjct: 121 A---PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172 Query: 198 SPKVTSTVIH 207 +P+V + ++ Sbjct: 173 APRVDAGILR 182 >gi|221120384|ref|XP_002166686.1| PREDICTED: similar to Probable dimethyladenosine transferase [Hydra magnipapillata] Length = 298 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 52/249 (20%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K GQ+ L + I+ I + + TV+E+G G GN++ +L A+K+I E D + Sbjct: 24 KHEFGQHILKNPLIVNAIIDKAAIKSTDTVLEVGPGTGNMSVKILE-KAKKLIACELDPR 82 Query: 82 FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 ++ P N+L +I D LK + +F+ +ANLPY I + +F + Sbjct: 83 MASEIQKRVQGSPEANKLHLIVGDVLKSELP-YFDCC-----VANLPYQISSPFVFKLL- 135 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 PF+ R KN+ F P P Sbjct: 136 --LHRPFF-------------RFLVGKNN--------------------------FRPPP 154 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 KV S+V+ P P P + + + AF ++ KTL ++L + + + Sbjct: 155 KVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAACFSSKAVIDMLEK-NYKIHC 213 Query: 260 RAENLSIED 268 N+ +ED Sbjct: 214 SINNIIVED 222 >gi|21224418|ref|NP_630197.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces coelicolor A3(2)] gi|13276816|emb|CAC33934.1| putative antibiotic resistance rRNA adenine methyltransferase [Streptomyces coelicolor A3(2)] Length = 260 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 21/189 (11%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNFL D +++A + G ++E+GAG G LT+ L +R++ E D Sbjct: 9 RTLSQNFLADRATAERVAHLAVPDRGRRPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P L+ ++ P+ + ++ D L + +P + N+P++ T + +W Sbjct: 68 RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSR-TADIVDWCLT 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197 P TLL Q E A+K + YGR L+VLT R + ++ + F P Sbjct: 121 A---PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172 Query: 198 SPKVTSTVI 206 +P+V + ++ Sbjct: 173 APRVDAGIL 181 >gi|58613499|gb|AAW79336.1| chloroplast dimethyladenosine synthase [Isochrysis galbana] Length = 176 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 13/123 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITV----IEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ +GQNFL+D ++ + + G+L+ V +E G G G LT +LL +++ +E Sbjct: 48 KQSLGQNFLVDESMSRGMV---GALEACRVGDRLVEFGPGQGALTALLLE-AHPQMLAVE 103 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136 DQ+ +L++ +HP L + + D L++D +++I N P+ + + LF Sbjct: 104 LDQRMEAVLRE---EHPQ-LALRRGDMLEIDLADLSAERGGSLQLITNTPFYLTSPFLFK 159 Query: 137 WIS 139 + Sbjct: 160 LLG 162 >gi|73487011|gb|AAZ76625.1| Erm(39)ne [Mycobacterium neworleansense] Length = 246 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 24/143 (16%) Query: 26 GQNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 GQNF D +I+K +A ++G +IEIGAG G LT L L R + IE D++ Sbjct: 12 GQNFXRDRRVVADIVKIVARTTGP-----IIEIGAGDGALTLPLQRLD-RPLTAIEIDRR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +S + + DF ++ +P ++ NLP+++ T +L + Sbjct: 66 RAGRLAARTSA----------EVVGTDFLRYRLPPTPHVVVGNLPFHLTTAILRRLLHG- 114 Query: 142 TWPPFWESLTLLFQKEVGERITA 164 P W LL Q EV R A Sbjct: 115 ---PGWTDAVLLMQWEVARRRAA 134 >gi|159161780|gb|ABW95883.1| ErmB [uncultured bacterium] Length = 213 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 29/174 (16%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERI 162 F +I+ N+PY++ T +++F ++D + E +++ +G Sbjct: 73 FQFPN----KQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGF---YKRTLGIHR 125 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 T L +L + + + F P PKV S +I H +P Sbjct: 126 T----------LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|226292329|gb|EEH47749.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb18] Length = 310 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 13/146 (8%) Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + L F ++ + P L+FQ+E R+ A+ Y RLSV + + Sbjct: 62 DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + + F P P V S+V+ +P NP P + + + AF ++ KT+R S LG Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGT 175 Query: 247 ENLLHQAGIETNLRA----ENLSIED 268 ++L +E+N R N+ +ED Sbjct: 176 TSVLDM--LESNYRTWCAQNNIPVED 199 >gi|167947426|ref|ZP_02534500.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 86 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ L D S L I DALK DF + P+R++ NLPYNI T LL Sbjct: 10 VVELDRDLIGPLAD-SCATLGELTIHSADALKFDFTALASPERPLRVVGNLPYNISTPLL 68 Query: 135 FNWIS 139 F+ +S Sbjct: 69 FHLLS 73 >gi|225350652|gb|ACN88190.1| adenine-N6 methyltransferase [Streptococcus pyogenes] gi|225350654|gb|ACN88191.1| adenine-N6 methyltransferase [Streptococcus pyogenes] Length = 180 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 29/193 (15%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138 ++SS+ R+ +I D L+ F +I+ ++PY++ T +++F Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESR 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++D + E ++ + L +L + + + F P Sbjct: 119 ASDIYLIVEEGF-------------YKRTLDIHRTLGLLLHTQVSIQQLLKLPAECFHPK 165 Query: 199 PKVTSTVIHFIPH 211 PKV S +I H Sbjct: 166 PKVNSVLIKLTRH 178 >gi|257056840|ref|YP_003134672.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora viridis DSM 43017] gi|256586712|gb|ACU97845.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora viridis DSM 43017] Length = 269 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 7/106 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 G +FL+ ++L + + V+++GAGPG +T L AR V+ +E+D +F Sbjct: 18 GVHFLVSKDVLDTLVRTCTPGPDDLVLDLGAGPGVVTAALARTHAR-VLAVERDPEFVRT 76 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 L +H +R+ +IQ D V + + ++AN PY++ T Sbjct: 77 LNS-RFRHNDRVRVIQADIRTVALPRRDFL-----VVANPPYSLST 116 >gi|227327729|ref|ZP_03831753.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 116 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 21/125 (16%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H H+ +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116 +G R + VIE D+ L+ HP ++L IIQ DA+ +DF Sbjct: 53 ---APVGDRMDRFTVIELDRDLAARLE----THPTLKDKLTIIQQDAMTIDFAALAEQAG 105 Query: 117 SPIRI 121 P+R+ Sbjct: 106 QPLRV 110 >gi|159161813|gb|ABW95899.1| ErmB [uncultured bacterium] Length = 213 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + ++ V IE D F ++SS+ +R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKHVTSIELDSHLF----NLSSEKLKLNSRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PYN+ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGNIPYNLSTKI----IKKVVFESHASDIYLVVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|295673178|ref|XP_002797135.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01] gi|226282507|gb|EEH38073.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01] Length = 309 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 13/146 (8%) Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + L F ++ + P L+FQ+E R+ A+ Y RLSV + + Sbjct: 62 DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + + F P P V S+V+ +P NP P + + + AF ++ KT+R S LG Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGT 175 Query: 247 ENLLHQAGIETNLRA----ENLSIED 268 ++L +E+N R N+ +ED Sbjct: 176 TSVLDM--LESNYRTWCAQNNIPVED 199 >gi|72547154|ref|XP_843186.1| rRNA dimethyltransferase [Leishmania major strain Friedlin] gi|323363700|emb|CBZ12705.1| putative rRNA dimethyltransferase [Leishmania major strain Friedlin] Length = 464 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 17 YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 YK+ ++ Q F+L+L ++ ++ ++ + ++E+G G G+LT+ LLT Sbjct: 39 YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 98 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V+ IE D++F P L+ I + N+ + + D LKVD + + P + AN+ Sbjct: 99 CVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLKSAFPHFVKANI 154 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 15/186 (8%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-----PFWESLTLLF-QKE 157 A V ++ N ++ + +IANLP+ I T LL + +AD F +F Q+E Sbjct: 245 AFDVTNHRWSNGNAKVEVIANLPFEIITELLMRY-AADCSQHRGLFAFGRVPIHVFTQRE 303 Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217 V ERI A S + RLSVL + ++P +V ++ P P+ Sbjct: 304 VAERILAPAGSVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAH 363 Query: 218 CL--ESLKKITQEAF--GKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDF 269 L SL T G R T+ +SL R L L + ++ + +LS+ + Sbjct: 364 GLSASSLIHFTNLLMKPGLRAATVHKSLSRFAPAELVQYMLQELRMDGAMTVLDLSVVEV 423 Query: 270 CRITNI 275 R+ + Sbjct: 424 TRLACL 429 >gi|117558557|gb|AAI27364.1| tfb2m protein [Xenopus (Silurana) tropicalis] Length = 323 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 +G ++E GPG LTQ LL GAR V+ +E ++ F P L+ + + +LE++ D K Sbjct: 109 NGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLPSLQLLENNMDGQLEVVHCDFFK 167 Query: 107 VD 108 +D Sbjct: 168 LD 169 >gi|9507389|ref|NP_040475.1| 23S RNA methylase [Plasmid pT48] gi|253730996|ref|ZP_04865161.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735006|ref|ZP_04869171.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|127195|sp|P13978|ERMC3_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|455358|gb|AAA20192.1| 23S RNA methylase [Plasmid pT48] gi|253725266|gb|EES93995.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727019|gb|EES95748.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 244 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|301603803|ref|XP_002931532.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Xenopus (Silurana) tropicalis] Length = 414 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 +G ++E GPG LTQ LL GAR V+ +E ++ F P L+ + + +LE++ D K Sbjct: 109 NGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLPSLQLLENNMDGQLEVVHCDFFK 167 Query: 107 VD 108 +D Sbjct: 168 LD 169 >gi|307092018|gb|ADN28344.1| putative rRNA methyltransferase [uncultured bacterium] Length = 115 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 8/99 (8%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 + I ++ G L TV+EIG G G LT LL A+ VI +E D +S N Sbjct: 7 RAIVDALGDLSQATVLEIGPGRGVLTG-LLAARAKHVIAVELDAAL------AASLQGNS 59 Query: 97 LEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134 +E++ D LKVD + + +I NLPY I + +L Sbjct: 60 VEVLCQDILKVDLTGLAVQHGTRLFVIGNLPYYISSPIL 98 >gi|32455918|ref|NP_862543.1| methylase ermT [Plasmid p121BS] gi|11527994|gb|AAG37071.1|AF310974_2 methylase ermT [Plasmid p121BS] Length = 244 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 22/250 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T + L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-LELAKRCNYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ S L++ +++ I F P P+V S++ Sbjct: 123 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264 I H P L+ K+ K + + ++L +N +QA + N+ Sbjct: 174 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYRKLFSKNQFYQALKYARIDDLNNI 227 Query: 265 SIEDFCRITN 274 S E F + N Sbjct: 228 SFEQFLSLFN 237 >gi|307092020|gb|ADN28345.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 11/109 (10%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 L++I+E S V+EIG G G +T+ L G V IE D+ +L+ S N Sbjct: 14 LEEISEVS------QVVEIGPGMGAITEFFLA-GGTAVTAIEVDKGLAEVLRARFSGD-N 65 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + +++ D LKV+ ++ NLPY I T L+ W+ P Sbjct: 66 KFHLVEGDVLKVEMSPLIMARV---VVGNLPYYISTPLIARWMECPQPP 111 >gi|228994|prf||1815179A rRNA methyltransferase Length = 260 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 21/190 (11%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNF+ D +++A + G ++E+GAG G LT+ L +R++ E D Sbjct: 9 RTLSQNFIADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P L+ ++ P+ + ++ D L + +P + N+P++ T + +W Sbjct: 68 RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSR-TADIVDWCLT 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197 P TLL Q E A+K + YGR L+VLT R + ++ + F P Sbjct: 121 A---PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172 Query: 198 SPKVTSTVIH 207 +P+V + ++ Sbjct: 173 APRVDAGILR 182 >gi|269124773|ref|YP_003298143.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM 43183] gi|268309731|gb|ACY96105.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM 43183] Length = 313 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 25/229 (10%) Query: 22 KKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 ++ + QNFL D + + + G V+E+GAG G +T+ L A VI E D Sbjct: 19 RRSLSQNFLADPAAIGRYVRVVTRDLPGGALVVEVGAGDGRITRALAAH-AGAVIAYEID 77 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 P+L H + + DF + P + ++PY +R++ +W Sbjct: 78 ----PVLA--GRLHAACRPLGNVRCVPGDFLSARPPARPFHLTGSIPYAATSRIM-DWAL 130 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT----GWRTKATMMFDISPHVF 195 A S TL+ Q E + T + RL+VLT WR + I F Sbjct: 131 AAP---SLASATLITQLEYALKRTGGYR--RWSRLTVLTWPVFTWR----LAGRIDRRAF 181 Query: 196 FPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK 242 P P+V S ++ P+ P ++ + FG R TL SL+ Sbjct: 182 RPVPRVDSAILRIERRERPLLPPGLPAGYRRCVEIGFGGRGGTLHASLR 230 >gi|113196900|gb|ABI31750.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 21/194 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V I D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIALDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ ++PY++ T++ I Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 STVIHFIPHLNPIP 216 S +I H +P Sbjct: 170 SVLIKLTRHTTDVP 183 >gi|72528309|gb|AAZ73008.1| ribosomal methylase Erm34 [Bacillus clausii] Length = 240 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 34/193 (17%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KDISS 91 +LK+I + + TV+E+GAG G LT +L+ A +V+ +E DQ+ L K + S Sbjct: 2 RLLKEIVDKADVSVRDTVLELGAGKGALTT-ILSERADRVLAVEYDQKCIEALQWKLVGS 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLFNWISADTWPPFWE 148 ++ + ++ D +KV + P +++N+PY I T ++L N + Sbjct: 61 KN---VSVLHQDIMKVALP-----TEPFVVVSNIPYAITTAIMKMLLNNPKNKL-----Q 107 Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------ISPHVFFPSPKVT 202 ++ +K +R T+ Y + W M FD IS F P PKV Sbjct: 108 RGAIVMEKGAAKRFTSVSPKDAY-----VMAWH----MWFDIHYERGISRSSFSPPPKVD 158 Query: 203 STVIHFIPHLNPI 215 S ++ + +P+ Sbjct: 159 SALVRIVRKQHPL 171 >gi|183220525|ref|YP_001838521.1| putative dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778947|gb|ABZ97245.1| Putative dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 256 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 16/174 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRL 97 +A+ S +T+ EIG G G LT +L L ++ + E D + + KD I + P+ + Sbjct: 7 VAKPLFSEGDVTLAEIGIGLGTLTYPILCL-EKETDLFEIDHAYIQLAKDEILPKFPHAI 65 Query: 98 EIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 + DAL E F+I + + NLPY++ T ++ I ++ + QK Sbjct: 66 -LHAGDAL----ENLFHIYPKKVFVFGNLPYHLTTEIINTLIINCR---HFQGGIFMVQK 117 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 E ER+ + +S LSV + + + + FFP PK+ S ++ P Sbjct: 118 EFAERLVKETSS-----LSVFLSAFCEIKFLKTVHKNCFFPIPKIHSALLLLTP 166 >gi|307092066|gb|ADN28368.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 4/105 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +I ++G +++EIG G G LT +L+ A KV+ IEKD + L + Sbjct: 2 DQNPLLRIVAAAGLSKSDSILEIGPGLGPLTDLLIA-NAAKVMAIEKDARLLAFLGEKYQ 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 Q L+++ DAL+ + S ++++NLPY++ + +L Sbjct: 61 Q--TSLDLVYADALEF-LQTEQRDWSDWKVVSNLPYSVASPILVE 102 >gi|307565863|ref|ZP_07628323.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307345401|gb|EFN90778.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 477 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 10/88 (11%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 S G T++E AG GN+ L GA +VI EKD+ +L D + +II DD Sbjct: 26 SFVGKTILEPSAGKGNIVDWLKANGAGRVIACEKDENLKKLLTD-------KCDIIADDF 78 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTR 132 L V E+ IS I+ N P++ G + Sbjct: 79 LSVSSEQ---ISHVDYIVMNPPFSEGAK 103 >gi|300912862|ref|ZP_07130301.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|300885836|gb|EFK81042.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 182 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|307092042|gb|ADN28356.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 4/105 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L +I ++G +++EIG G G LT +L+ A KV+ IEKD + L + Sbjct: 2 DQNQLLRIVAAAGLSKSDSILEIGPGLGPLTDLLIA-NAAKVMAIEKDARLLAFLGEKYQ 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 Q L+++ DAL+ + S ++++NLPY++ + +L Sbjct: 61 Q--TSLDLVYADALEF-LQTEQRDWSDWKVVSNLPYSVASPILVE 102 >gi|307092034|gb|ADN28352.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092056|gb|ADN28363.1| putative rRNA methyltransferase [uncultured bacterium] Length = 115 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 8/99 (8%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 + I ++ G L TV+EIG G G LT LL A+ VI +E D L+ N Sbjct: 7 RAIVDALGDLSQATVLEIGPGRGVLTG-LLAARAKHVIAVELDAALAVSLQG------NS 59 Query: 97 LEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134 +E++ D LKVD + + +I NLPY I + +L Sbjct: 60 VEVLCQDILKVDLTGLAVQHGTRLLVIGNLPYYISSPIL 98 >gi|73960781|ref|XP_537224.2| PREDICTED: similar to transcription factor B2, mitochondrial isoform 1 [Canis familiaris] Length = 401 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 L I E+ ++E GPG LT+ LL A KVI +E ++ F P L+ + + Sbjct: 84 LAHILENERKTPDKLLLECNPGPGILTEALLKSKA-KVIALESNRNFLPHLQSLRKKVDG 142 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRI---------IANLPYNIGT--------------- 131 LE+I D K+D F + PI I IA +P++ T Sbjct: 143 ELEVIYCDFFKMDPRNFGIVKPPIMISETLFQHLGIAAVPWSEDTPLRVVGIFPAKNEKK 202 Query: 132 ---RLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177 +LL++ S+ + + L + + E++ A +PH Y LSVL Sbjct: 203 ILWKLLYDLYSSTSVYSYGRVQLNMFITEREYEKLVASPETPHLYQVLSVL 253 >gi|68535048|ref|YP_254597.1| hypothetical protein pSHaeB01 [Staphylococcus haemolyticus JCSC1435] gi|68448409|dbj|BAE05991.1| ermC [Staphylococcus haemolyticus JCSC1435] Length = 244 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|28373207|ref|NP_783844.1| erythromycin resistance protein [Lactobacillus fermentum] gi|28273050|emb|CAD32685.1| erythromycin resistance protein [Lactobacillus fermentum] Length = 245 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 15/191 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T L V IE D + I Sbjct: 8 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRI 66 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I ++PYNI T ++ + T Sbjct: 67 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGSIPYNISTDIIRKIVFESTATE 121 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ S L++ +++ I F P PKV S + Sbjct: 122 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPKVNSVL 172 Query: 206 IHFIPHLNPIP 216 I H +P Sbjct: 173 IKLTRHTTDVP 183 >gi|256965588|ref|ZP_05569759.1| N-methyltransferase [Enterococcus faecalis HIP11704] gi|256956084|gb|EEU72716.1| N-methyltransferase [Enterococcus faecalis HIP11704] Length = 171 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 35/188 (18%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138 ++SS+ R+ +I D L+ F +I+ N+PY++ T +++F Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQIIKKVVFESR 118 Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++D + E TL + +G +L + + + F Sbjct: 119 ASDIYLIVEEGFYKRTLDIHRTLG----------------LLLHTQVSIKQLLKLPAECF 162 Query: 196 FPSPKVTS 203 P PKV S Sbjct: 163 HPKPKVNS 170 >gi|213620904|ref|ZP_03373687.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 53 Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 RRKT+R SL L L + GI+ +RAEN+S+ +C++ N L++N Sbjct: 1 RRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 47 >gi|307091872|gb|ADN28271.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 14/123 (11%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ I ++ V+E+G G G+LT L+ A +++ IE D F P+ + + Sbjct: 1 IDLNLIDLIGTTAELTSADAVLEVGTGTGSLTARLVK-EAGQIVSIEIDTAFAPVARQVV 59 Query: 91 SQHPNRLEIIQDDALKVDFE------KFFNISS------PIRIIANLPYNIGTRLLFNWI 138 + N ++ +Q D L E K ++ ++ +++ANLPY I L+ N + Sbjct: 60 GEREN-VKYLQGDCLAKKSELNPAMLKAWDAAARKPGITTRKLVANLPYVIAMPLISNLL 118 Query: 139 SAD 141 +D Sbjct: 119 CSD 121 >gi|157058876|gb|ABV03165.1| ErmC [Cloning vector pJL-ES] gi|157058879|gb|ABV03167.1| ErmC [Cloning vector pJL-proES] Length = 244 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKKYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|159161826|gb|ABW95905.1| ErmB [uncultured bacterium] Length = 213 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 27/207 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ +R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNSRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHVSDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 + L +L + + + F P PKV S +I H +P L Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253 + KR ++L +N HQA Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200 >gi|70944826|ref|XP_742302.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi] gi|56521203|emb|CAH74779.1| dimethyladenosine transferase, putative [Plasmodium chabaudi chabaudi] Length = 149 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 9/113 (7%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 DG +IE+G G G L++ L + + IE D + I IS P + I DD L+ Sbjct: 45 DGKGIIELGCGLGQLSKYLFK-KYKNMTAIEIDSRALAI---ISRTMPG-FDFIHDDVLQ 99 Query: 107 VDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +++++ N ++ + +I NLP+ I +++LF + + + E + Q EV Sbjct: 100 INYKELSINKNTKLSVIGNLPFYITSQILFCLLD---FYKYIEQAVVTIQYEV 149 >gi|256964193|ref|ZP_05568364.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|256954689|gb|EEU71321.1| rRNA methylase [Enterococcus faecalis HIP11704] Length = 171 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 21/181 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++SS+ R+ +I D L+ F +I+ N+PY++ T++ I Sbjct: 65 --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + L+ ++ +R + L +L + + + F P PKV Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169 Query: 203 S 203 S Sbjct: 170 S 170 >gi|195054200|ref|XP_001994014.1| GH22567 [Drosophila grimshawi] gi|193895884|gb|EDV94750.1| GH22567 [Drosophila grimshawi] Length = 473 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 TV+EI GPG+ T+ LL + R++I+IE+ + F P L+++ + +P+R+++ Q D + + Sbjct: 86 TVLEINPGPGHFTRHLLDRESQFRRLILIEQMEHFMPRLQELHALYPDRVKVRQGDFIGI 145 >gi|9507309|ref|NP_040407.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pIM13] gi|15676003|ref|NP_273130.1| rRNA adenine N-6-methyltransferase [Neisseria meningitidis MC58] gi|60677343|ref|YP_209657.1| rRNA methylase [Staphylococcus lentus] gi|188039007|ref|YP_001901404.1| ErmC [Staphylococcus aureus] gi|188039010|ref|YP_001901402.1| ErmC [Staphylococcus aureus] gi|253316335|ref|ZP_04839548.1| ErmC [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|258420075|ref|ZP_05683031.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719] gi|258445548|ref|ZP_05693733.1| MlsR [Staphylococcus aureus A6300] gi|282929333|ref|ZP_06336901.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765] gi|127198|sp|P13956|ERM_BACSU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|11256781|pir||A81241 rRNA adenine N-6-methyltransferase NMB0066 [imported] - Neisseria meningitidis (strain MC58 serogroup B) gi|4699789|pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase gi|4699790|pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase gi|7546361|pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|7546362|pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|7546363|pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|7546364|pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|149052|gb|AAA98136.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pIM13] gi|7225287|gb|AAF40534.1| rRNA adenine N-6-methyltransferase; foreign cassette inserted to disrupt SiaD (NMB0067) to reduce virulence [Neisseria meningitidis MC58] gi|14324127|gb|AAK58461.1| ErmC [Cloning vector pIDN4] gi|28412258|gb|AAO39978.1| MlsR [Shuttle vector pSOS96] gi|28412265|gb|AAO39984.1| MlsR [Shuttle vector pSOS94] gi|28412272|gb|AAO39990.1| MlsR [Shuttle vector pSOS95] gi|33520710|gb|AAQ21191.1| MlsR [Reporter vector pGUSA] gi|60416749|emb|CAI59792.1| rRNA methylase [Staphylococcus lentus] gi|164416076|gb|ABY53434.1| ErmC [Staphylococcus aureus] gi|164416079|gb|ABY53436.1| ErmC [Staphylococcus aureus] gi|257843938|gb|EEV68331.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719] gi|257855644|gb|EEV78574.1| MlsR [Staphylococcus aureus A6300] gi|270055323|gb|ACZ58816.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) [Staphylococcus aureus] gi|270300163|gb|ACZ68969.1| rRNA adenine N-6-methyltransferase, (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) [Staphylococcus aureus] gi|282591833|gb|EFB96884.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765] gi|291032710|gb|ADD71856.1| dimethyladenosine transferase [Staphylococcus aureus] gi|304389165|gb|ADM29196.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] Length = 244 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|220897976|gb|ACL81266.1| erythromycin resistance protein [Lactobacillus reuteri] Length = 244 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 15/181 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKVVFES 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S + Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSAL 173 Query: 206 I 206 I Sbjct: 174 I 174 >gi|282165916|gb|ADA79936.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) [Staphylococcus aureus] Length = 244 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 23/185 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141 ++ H N +++ D L+ F K + +I N+PYNI T +++F+ I+ + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIVFDSIANE 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + L+ + +R+ K S L++L +++ + F P PKV Sbjct: 123 IY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169 Query: 202 TSTVI 206 S++I Sbjct: 170 NSSLI 174 >gi|293367853|ref|ZP_06614498.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318022|gb|EFE58423.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] Length = 244 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 23/185 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141 ++ H N +++ D L+ F K + +I N+PYNI T +++F I+ + Sbjct: 68 TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVVFESIADE 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L+ + +R+ K S L++L +++ + F P PKV Sbjct: 123 SY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169 Query: 202 TSTVI 206 S++I Sbjct: 170 NSSLI 174 >gi|2326851|emb|CAA70207.1| adenine methylase [Staphylococcus haemolyticus] Length = 244 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|34147928|gb|AAQ62542.1| erythromycin resistance methylase [Streptococcus sp. 'group G'] Length = 184 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 15/180 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K ++ +I ++PYNI T ++ I+ D+ + Sbjct: 69 KKAVEPFQN-IKVIHEDILKFSFPK----NTDYKIFGSIPYNISTDIV-KKIAFDSQAKY 122 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 L+ ++ +R+ + + L +L ++ + F P P V S +I Sbjct: 123 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174 >gi|159161788|gb|ABW95887.1| ErmB [uncultured bacterium] Length = 213 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSERL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|159161822|gb|ABW95903.1| ErmB [uncultured bacterium] gi|159161828|gb|ABW95906.1| ErmB [uncultured bacterium] Length = 213 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PYN+ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 + L +L + + + F P PKV S +I H +P L Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253 + KR ++L +N HQA Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200 >gi|49489776|ref|YP_025321.1| hypothetical protein pE194p5 [Staphylococcus aureus] gi|127193|sp|P02979|ERMC1_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|16902901|gb|AAL30371.1|AF424805_2 adenine methylase [Transposon mutagenesis vector pRL692] gi|46558|emb|CAA24591.1| unnamed protein product [Staphylococcus aureus] gi|209127|gb|AAA72303.1| erythromycin resistance determinant [unidentified cloning vector] gi|1185576|gb|AAB40308.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1728] gi|1185582|gb|AAB40313.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1730] gi|1185608|gb|AAB40336.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1729] gi|1185616|gb|AAB40343.1| erythromicin resistance; erythromycin resistance determinant [Cloning vector pDG1731] gi|1638844|emb|CAA57985.1| adenine methylase [Staphylococcus equorum subsp. equorum] gi|5327232|emb|CAB46341.1| adenine methylase [Staphylococcus aureus] gi|11545512|gb|AAG37883.1| erythromycin resistance [Tn10 delivery vector pHV1248] gi|11545518|gb|AAG37888.1| erythromycin resistance [Tn10 delivery vector pHV1249] gi|37496520|emb|CAD50595.1| adenine methylase [Cloning vector pUvBBAC] gi|50345956|gb|AAT74896.1| erythromycin-resistance protein [Anabaena transfer vector pRL2665b] gi|50949217|emb|CAF31657.1| rRNA adenine N-6-methyltransferase [Cloning vector pGID052] gi|83659404|gb|ABC40606.1| adenine methylase [Cloning vector pHP13] gi|156523812|gb|ABU68999.1| Erm [Cloning vector pHB518] Length = 244 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 23/185 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141 ++ H N +++ D L+ F K + +I N+PYNI T +++F+ I+ + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIYGNIPYNISTDIIRKIVFDSIANE 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + L+ + +R+ K S L++L +++ + F P PKV Sbjct: 123 IY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169 Query: 202 TSTVI 206 S++I Sbjct: 170 NSSLI 174 >gi|159161731|gb|ABW95859.1| ErmB [uncultured bacterium] Length = 213 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PYN+ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 + L +L + + + F P PKV S +I H +P L Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253 + KR ++L +N HQA Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200 >gi|332236391|ref|XP_003267387.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Nomascus leucogenys] Length = 396 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++E GPG LTQ LL GA KV+ +E D+ F P L+ + +L +I D K+D Sbjct: 99 LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGRNLDGKLRVIHCDFFKIDPR 157 Query: 111 KFFNISSPIRIIANLPYNIG 130 I P L N+G Sbjct: 158 SGGLIKPPAMSSRGLFKNLG 177 >gi|159161816|gb|ABW95900.1| ErmB [uncultured bacterium] Length = 213 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PYN+ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 + L +L + + + F P PKV S +I H +P L Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253 + KR ++L +N HQA Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200 >gi|159161762|gb|ABW95874.1| ErmB [uncultured bacterium] gi|159161790|gb|ABW95888.1| ErmB [uncultured bacterium] Length = 213 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|93213580|gb|ABF02183.1| erythromycin-resistance protein [Streptococcus pyogenes] Length = 198 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|26224788|gb|AAN76364.1| putative adenine rRNA methylase [Mycobacterium microti] Length = 146 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V +IGAG G LT L+ GAR V+ +E + +L++ + P + ++ DA + Sbjct: 3 GELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRE---RFPG-ITVVHADAASI 57 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 P R++AN PY I +RLL ++ ++ Sbjct: 58 RLP-----GRPFRVVANPPYGISSRLLRTVVAPNS 87 >gi|254232160|ref|ZP_04925487.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C] gi|124601219|gb|EAY60229.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C] Length = 150 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 25/159 (15%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V +IGAG G LT L+ GAR V+ +E + +L++ + P + ++ DA + Sbjct: 4 GELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRE---RFPG-ITVVHADAASI 58 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 P R++AN PY I +RLL ++ ++ + L+ Q+ + + A +N Sbjct: 59 RLP-----GRPFRVVANPPYGISSRLLRTLLAPNSG---LVAADLVLQRALVCKF-ASRN 109 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + R T+ + F P P V S V+ Sbjct: 110 A-----------RRFTLTVGLMLPRRAFLPPPHVDSAVL 137 >gi|71558999|ref|YP_271816.1| ErmC [Staphylococcus aureus] gi|68270937|gb|AAY88963.1| ErmC [Staphylococcus aureus] Length = 244 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVDKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|159161759|gb|ABW95873.1| ErmB [uncultured bacterium] gi|159161776|gb|ABW95881.1| ErmB [uncultured bacterium] Length = 213 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|159161782|gb|ABW95884.1| ErmB [uncultured bacterium] gi|159161784|gb|ABW95885.1| ErmB [uncultured bacterium] gi|159161805|gb|ABW95895.1| ErmB [uncultured bacterium] Length = 213 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|11641289|ref|NP_071761.1| dimethyladenosine transferase 2, mitochondrial [Homo sapiens] gi|74752681|sp|Q9H5Q4|TFB2M_HUMAN RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Hepatitis C virus NS5A-transactivated protein 5; Short=HCV NS5A-transactivated protein 5; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=h-mtTFB; Short=h-mtTFB2; Short=hTFB2M; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|10439783|dbj|BAB15566.1| unnamed protein product [Homo sapiens] gi|13097249|gb|AAH03383.1| Transcription factor B2, mitochondrial [Homo sapiens] gi|33328300|gb|AAQ09600.1| NS5ATP5 [Homo sapiens] gi|55959218|emb|CAI16399.1| transcription factor B2, mitochondrial [Homo sapiens] gi|119597558|gb|EAW77152.1| transcription factor B2, mitochondrial, isoform CRA_d [Homo sapiens] gi|167773225|gb|ABZ92047.1| transcription factor B2, mitochondrial [synthetic construct] gi|261858246|dbj|BAI45645.1| transcription factor B2, mitochondrial [synthetic construct] Length = 396 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++E GPG LTQ LL GA KV+ +E D+ F P L+ + +L +I D K+D Sbjct: 99 LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPR 157 Query: 111 KFFNISSPIRIIANLPYNIG 130 I P L N+G Sbjct: 158 SGGVIKPPAMSSRGLFKNLG 177 >gi|15609125|ref|NP_216504.1| methyltransferase [Mycobacterium tuberculosis H37Rv] gi|15841466|ref|NP_336503.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium tuberculosis CDC1551] gi|31793167|ref|NP_855660.1| methyltransferase [Mycobacterium bovis AF2122/97] gi|148661799|ref|YP_001283322.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148823202|ref|YP_001287956.1| methyltransferase [Mycobacterium tuberculosis F11] gi|167970487|ref|ZP_02552764.1| hypothetical methyltransferase [Mycobacterium tuberculosis H37Ra] gi|215404208|ref|ZP_03416389.1| methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215411680|ref|ZP_03420476.1| methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|215427345|ref|ZP_03425264.1| methyltransferase [Mycobacterium tuberculosis T92] gi|215430906|ref|ZP_03428825.1| methyltransferase [Mycobacterium tuberculosis EAS054] gi|215446198|ref|ZP_03432950.1| methyltransferase [Mycobacterium tuberculosis T85] gi|218753706|ref|ZP_03532502.1| methyltransferase [Mycobacterium tuberculosis GM 1503] gi|219557950|ref|ZP_03537026.1| methyltransferase [Mycobacterium tuberculosis T17] gi|224990365|ref|YP_002645052.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798962|ref|YP_003031963.1| methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254364806|ref|ZP_04980852.1| hypothetical methyltransferase [Mycobacterium tuberculosis str. Haarlem] gi|254551011|ref|ZP_05141458.1| methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186962|ref|ZP_05764436.1| methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|260201089|ref|ZP_05768580.1| methyltransferase [Mycobacterium tuberculosis T46] gi|260205267|ref|ZP_05772758.1| methyltransferase [Mycobacterium tuberculosis K85] gi|289443479|ref|ZP_06433223.1| methyltransferase [Mycobacterium tuberculosis T46] gi|289447606|ref|ZP_06437350.1| methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289554234|ref|ZP_06443444.1| methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289570086|ref|ZP_06450313.1| methyltransferase [Mycobacterium tuberculosis T17] gi|289574662|ref|ZP_06454889.1| methyltransferase [Mycobacterium tuberculosis K85] gi|289746067|ref|ZP_06505445.1| methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289750568|ref|ZP_06509946.1| methyltransferase [Mycobacterium tuberculosis T92] gi|289754091|ref|ZP_06513469.1| methyltransferase [Mycobacterium tuberculosis EAS054] gi|289758101|ref|ZP_06517479.1| methyltransferase [Mycobacterium tuberculosis T85] gi|289762144|ref|ZP_06521522.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294996920|ref|ZP_06802611.1| methyltransferase [Mycobacterium tuberculosis 210] gi|297634559|ref|ZP_06952339.1| methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297731547|ref|ZP_06960665.1| methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298525486|ref|ZP_07012895.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776222|ref|ZP_07414559.1| methyltransferase [Mycobacterium tuberculosis SUMu001] gi|306780003|ref|ZP_07418340.1| methyltransferase [Mycobacterium tuberculosis SUMu002] gi|306784753|ref|ZP_07423075.1| methyltransferase [Mycobacterium tuberculosis SUMu003] gi|306789110|ref|ZP_07427432.1| methyltransferase [Mycobacterium tuberculosis SUMu004] gi|306793444|ref|ZP_07431746.1| methyltransferase [Mycobacterium tuberculosis SUMu005] gi|306797828|ref|ZP_07436130.1| methyltransferase [Mycobacterium tuberculosis SUMu006] gi|306803708|ref|ZP_07440376.1| methyltransferase [Mycobacterium tuberculosis SUMu008] gi|306808282|ref|ZP_07444950.1| methyltransferase [Mycobacterium tuberculosis SUMu007] gi|306968106|ref|ZP_07480767.1| methyltransferase [Mycobacterium tuberculosis SUMu009] gi|306972331|ref|ZP_07484992.1| methyltransferase [Mycobacterium tuberculosis SUMu010] gi|307080041|ref|ZP_07489211.1| methyltransferase [Mycobacterium tuberculosis SUMu011] gi|307084616|ref|ZP_07493729.1| methyltransferase [Mycobacterium tuberculosis SUMu012] gi|313658880|ref|ZP_07815760.1| methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|1403467|emb|CAA98396.1| PROBABLE METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv] gi|13881706|gb|AAK46317.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium tuberculosis CDC1551] gi|31618759|emb|CAD96863.1| PROBABLE METHYLTRANSFERASE [Mycobacterium bovis AF2122/97] gi|134150320|gb|EBA42365.1| hypothetical methyltransferase [Mycobacterium tuberculosis str. Haarlem] gi|148505951|gb|ABQ73760.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148721729|gb|ABR06354.1| hypothetical methyltransferase [Mycobacterium tuberculosis F11] gi|224773478|dbj|BAH26284.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320465|gb|ACT25068.1| methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289416398|gb|EFD13638.1| methyltransferase [Mycobacterium tuberculosis T46] gi|289420564|gb|EFD17765.1| methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289438866|gb|EFD21359.1| methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289539093|gb|EFD43671.1| methyltransferase [Mycobacterium tuberculosis K85] gi|289543840|gb|EFD47488.1| methyltransferase [Mycobacterium tuberculosis T17] gi|289686595|gb|EFD54083.1| methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289691155|gb|EFD58584.1| methyltransferase [Mycobacterium tuberculosis T92] gi|289694678|gb|EFD62107.1| methyltransferase [Mycobacterium tuberculosis EAS054] gi|289709650|gb|EFD73666.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713665|gb|EFD77677.1| methyltransferase [Mycobacterium tuberculosis T85] gi|298495280|gb|EFI30574.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308215334|gb|EFO74733.1| methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308327107|gb|EFP15958.1| methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308330486|gb|EFP19337.1| methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308334320|gb|EFP23171.1| methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308338121|gb|EFP26972.1| methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308341814|gb|EFP30665.1| methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308345301|gb|EFP34152.1| methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308349603|gb|EFP38454.1| methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308354231|gb|EFP43082.1| methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308358209|gb|EFP47060.1| methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308362140|gb|EFP50991.1| methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308365794|gb|EFP54645.1| methyltransferase [Mycobacterium tuberculosis SUMu012] gi|323719477|gb|EGB28604.1| methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326903599|gb|EGE50532.1| methyltransferase [Mycobacterium tuberculosis W-148] gi|328458717|gb|AEB04140.1| methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 179 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V +IGAG G LT L+ GAR V+ +E + +L++ + P + ++ DA + Sbjct: 33 GELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRE---RFPG-ITVVHADAASI 87 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLL 134 P R++AN PY I +RLL Sbjct: 88 RLP-----GRPFRVVANPPYGISSRLL 109 >gi|330948591|gb|EGH48851.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 74 Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 PN + Q DALK DF +R++ NLPYNI T L+F+ + + + + Sbjct: 2 PN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFM 57 Query: 154 FQKEVGERITA 164 QKEV ER+ A Sbjct: 58 LQKEVVERMAA 68 >gi|159161778|gb|ABW95882.1| ErmB [uncultured bacterium] Length = 213 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IRKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|90762292|gb|ABD97884.1| erythromycin resistant protein [Streptococcus pyogenes] Length = 198 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|55590166|ref|XP_514318.1| PREDICTED: transcription factor B2, mitochondrial isoform 2 [Pan troglodytes] gi|114573580|ref|XP_001139400.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial isoform 1 [Pan troglodytes] Length = 393 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++E GPG LTQ LL GA KV+ +E D+ F P L+ + +L +I D K+D Sbjct: 96 LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPR 154 Query: 111 KFFNISSPIRIIANLPYNIG 130 I P L N+G Sbjct: 155 SGGVIKPPAMSSRGLFKNLG 174 >gi|154281463|ref|XP_001541544.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150411723|gb|EDN07111.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 142 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 9/105 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E D + Sbjct: 38 IGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + P RLE++ D +K D +F++ I+N PY Sbjct: 97 EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDVC-----ISNTPY 135 >gi|93213584|gb|ABF02185.1| erythromycin-resistance protein [Streptococcus pyogenes] Length = 191 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|159161755|gb|ABW95871.1| ErmB [uncultured bacterium] Length = 213 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PYN+ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|159161722|gb|ABW95855.1| ErmB [uncultured bacterium] Length = 213 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 95 N---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKEVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|159161798|gb|ABW95892.1| ErmB [uncultured bacterium] gi|159161811|gb|ABW95898.1| ErmB [uncultured bacterium] Length = 213 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 95 N---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|284033869|ref|YP_003383800.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM 17836] gi|283813162|gb|ADB35001.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM 17836] Length = 182 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 LD +++ +++G G V+++GAG G LT L+ GA V+ +E L+ Sbjct: 16 LDSRWAQRVVDAAGVRPGDLVLDVGAGLGALTAPLVRAGA-DVVAVELHPHRADRLRRRF 74 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + P R +++ DA + + P R++++ PY I T LL +S + S Sbjct: 75 ADAPVR--VVRADAADLRLP-----TRPFRVVSSPPYGISTELLKRLLSPRS---RLVSA 124 Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 L+ Q++V R +P R S ++ + F P P V S V+ Sbjct: 125 DLVLQRQVVNRWV-DGRAPGRARWSRY----YDTSIGIRLPRKAFTPPPHVDSAVLRI 177 >gi|159161824|gb|ABW95904.1| ErmB [uncultured bacterium] Length = 213 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 95 N---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|127194|sp|P13957|ERMC2_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|8927568|gb|AAF82122.1|AF276982_3 erythromycin resistance [Integrative vector pNLE1] gi|153065|gb|AAA98228.1| ermC [Plasmid pE5] Length = 244 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P P+V S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|154344495|ref|XP_001568189.1| rRNA dimethyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065526|emb|CAM43293.1| putative rRNA dimethyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 469 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 17 YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 YK+ ++ Q F+L+L ++ ++ ++ + ++E+G G G LT+ LLT Sbjct: 40 YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGTLTRSLLTRP 99 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 V+ +E D++F P L+ I + + + + D LKVD + + P + AN+ Sbjct: 100 CVGVLGVEVDERFNPHLEQIRNYTNQKFQWVTADVLKVDELELLRSAFPHFVKANM 155 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 15/176 (8%) Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWP-----PFWESLTLLF-QKEVGERITAQKN 167 N ++ + +IANLP+ I T LL + + D F +F Q+EV ERI A Sbjct: 256 NGNAKVEVIANLPFAIITELLMRY-AVDCAQHRGLFAFGRVPVHIFAQREVAERILAPAG 314 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 S + RLSVL + ++P +V ++ P P+ L++ I Sbjct: 315 SVEFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHDLDASTLIHF 374 Query: 228 EAF----GKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNI 275 G R T+ +SL R L L + ++ + +LS+ + R+ ++ Sbjct: 375 TNLLMKPGLRAATVHKSLSRFAPAELVQYMLQELRMDGAMTVLDLSVVEVTRLASL 430 >gi|164604803|gb|ABY61962.1| erythromycin resistance methylase [Streptococcus suis] Length = 229 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 1 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 55 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 56 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIY 107 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 108 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 162 Query: 212 LNPIP 216 +P Sbjct: 163 TTDVP 167 >gi|332158500|ref|YP_004423779.1| methyltransferase related protein [Pyrococcus sp. NA2] gi|331033963|gb|AEC51775.1| methyltransferase related protein [Pyrococcus sp. NA2] Length = 204 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 +A S G ++G + ++GAG G L+ L LGA+KV +E D + ILK+ + + E Sbjct: 41 LAYSLGDIEGKVIADLGAGTGVLSYGALLLGAKKVYAVEIDSEAVEILKENLKEFKGKFE 100 Query: 99 IIQDDA----LKVD 108 + D +KVD Sbjct: 101 VFLGDVSSFKVKVD 114 >gi|5668894|gb|AAD46055.1|AF076212_5 adenine methylase [Promoter screenings vector pMM223] gi|5668900|gb|AAD46060.1|AF076213_5 adenine methylase [Promoter screenings vector pMM225] Length = 244 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 23/185 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141 ++ H N +++ D ++ F K + +I N+PYNI T +++F+ I+ + Sbjct: 68 TENKLVDHDN-FQVLNKDIMQFKFPK----NQSYKIYGNIPYNISTDIIRKIVFDSIANE 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + L+ + +R+ K S L++L +++ + F P PKV Sbjct: 123 IY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169 Query: 202 TSTVI 206 S++I Sbjct: 170 NSSLI 174 >gi|89243240|gb|ABD64776.1| erythromycin resistance protein [Streptococcus pyogenes] gi|126693559|gb|ABO26569.1| ErmB [Streptococcus uberis] Length = 198 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|159161809|gb|ABW95897.1| ErmB [uncultured bacterium] Length = 213 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PYN+ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|164604805|gb|ABY61963.1| erythromycin resistance methylase [Streptococcus suis] Length = 229 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 1 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 55 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 56 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIY 107 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 108 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 162 Query: 212 LNPIP 216 +P Sbjct: 163 TTDVP 167 >gi|124365213|gb|ABN09638.1| ErmB [Streptococcus pyogenes] Length = 191 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|414445|gb|AAC43194.1| Homologous to Swiss-Prot Accession Number P06992, 16S rRNA methyltransferase [Mycoplasma genitalium] Length = 112 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 24/117 (20%) Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220 R+ A+ NS Y + T +F I H F P PKV ST+I LE Sbjct: 1 RLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKPKVDSTLI-----------LLE 49 Query: 221 SLKKIT---------QEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENL 264 K ++ ++ F +RRK L +LK N++ + ++T++RA+ L Sbjct: 50 KNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQNLKTSIRAQEL 106 >gi|224770|prf||1112181A gene ermE Length = 133 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVD 108 L++ S HPN +E++ D L + Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAE 120 >gi|93213582|gb|ABF02184.1| erythromycin-resistance protein [Streptococcus pyogenes] Length = 191 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|281347296|gb|EFB22880.1| hypothetical protein PANDA_013195 [Ailuropoda melanoleuca] Length = 396 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 30/156 (19%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108 ++E GPG LTQ LL A KVI +E ++ F P L+ + + +LE++ D K+D Sbjct: 97 ILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKLEVVYCDFFKMDPR 155 Query: 109 ---------------FEKF------FNISSPIRIIANLPY----NIGTRLLFNWISADTW 143 F F ++ +P+R+I P I +LL++ S+ + Sbjct: 156 NSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKILWKLLYDIYSSTSV 215 Query: 144 PPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177 + L + + E++ A +PH Y LSVL Sbjct: 216 YSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVL 251 >gi|89242973|gb|ABD64742.1| erythromycin resistance protein [Streptococcus pyogenes] gi|89243237|gb|ABD64775.1| erythromycin resistance protein [Streptococcus pyogenes] Length = 191 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|301777091|ref|XP_002923964.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like [Ailuropoda melanoleuca] Length = 399 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 30/156 (19%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108 ++E GPG LTQ LL A KVI +E ++ F P L+ + + +LE++ D K+D Sbjct: 97 ILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKLEVVYCDFFKMDPR 155 Query: 109 ---------------FEKF------FNISSPIRIIANLPY----NIGTRLLFNWISADTW 143 F F ++ +P+R+I P I +LL++ S+ + Sbjct: 156 NSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKILWKLLYDIYSSTSV 215 Query: 144 PPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177 + L + + E++ A +PH Y LSVL Sbjct: 216 YSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVL 251 >gi|159161820|gb|ABW95902.1| ErmB [uncultured bacterium] Length = 213 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|159161818|gb|ABW95901.1| ErmB [uncultured bacterium] Length = 213 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTAKLAKI-SKQVTSIESDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 + L +L + + + F P PKV S +I H +P L Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253 + KR ++L +N HQA Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200 >gi|9507371|ref|NP_040462.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pNE131] gi|127201|sp|P06572|ERMM_STAEP RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150831|gb|AAA98296.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pNE131] Length = 244 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S ++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----FALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|93213586|gb|ABF02186.1| erythromycin-resistance protein [Streptococcus pyogenes] gi|126693553|gb|ABO26568.1| ErmB [Streptococcus agalactiae] Length = 191 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|34328034|ref|NP_899170.1| rRNA methylase [Staphylococcus sciuri] gi|21953224|emb|CAC86410.1| adenine methylase [Staphylococcus sciuri] gi|33352204|emb|CAE18145.1| rRNA methylase [Staphylococcus sciuri] Length = 243 Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 30/254 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKRNIDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + I N+PYNI T + + T+ Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYNIFGNIPYNISTDI----VKRITFES 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ +K +R+ + + L +L M+ + P F P P V S + Sbjct: 119 QAKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRA 261 I H P+ I+++ + K R K + + + L +N QA N+ Sbjct: 174 IVLERH-QPL---------ISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTN 223 Query: 262 EN-LSIEDFCRITN 274 N LS E F I N Sbjct: 224 INKLSKEQFLSIFN 237 >gi|34147930|gb|AAQ62543.1| erythromycin resistance methylase [Streptococcus sp. 'group G'] Length = 219 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|126693577|gb|ABO26572.1| ErmB [Streptococcus agalactiae] Length = 191 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|159161786|gb|ABW95886.1| ErmB [uncultured bacterium] Length = 213 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAGCFHPKPKVNSVLIKLTRHTTDVP 169 >gi|126693566|gb|ABO26570.1| ErmB [Streptococcus uberis] Length = 191 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|126583369|gb|ABO21678.1| ErmB [Streptococcus uberis] Length = 191 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|307092052|gb|ADN28361.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 5/106 (4%) Query: 32 DLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I S+ +L G V+EIG G G LT++LLT A V+ I+ D++ LK+ Sbjct: 2 DGNQLRRIV-SAAALKGTDKVLEIGPGLGPLTELLLT-EAGSVLAIDLDRRLVDFLKERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ N ++ DDAL + + +++ANLPY++ + +L Sbjct: 60 AETKNP-TLLHDDALGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103 >gi|90103246|gb|ABD85468.1| erythromycin resistance methylase [Streptococcus pneumoniae] Length = 191 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|159466026|ref|XP_001691210.1| ribosomal RNA adenine methylase transferase [Chlamydomonas reinhardtii] gi|158279182|gb|EDP04943.1| ribosomal RNA adenine methylase transferase [Chlamydomonas reinhardtii] Length = 203 Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 34/166 (20%) Query: 85 ILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 IL+DI ++ L+++ DA+K + ++++ANLPYNI LL + Sbjct: 56 ILRDIVAAAAVPELQLVHGDAVK---------AKRVKVVANLPYNITKELLQLLLPLGG- 105 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 L L+ Q E GER+T + +P G R F IS + P P V Sbjct: 106 --LVSDLHLMLQHEAGERLT--ERTP---------GGR---EYRFRISRFKYDPVPGVDG 149 Query: 204 TVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRL 244 ++ F L P L ++L ++ +AF +RRK +R SL L Sbjct: 150 ALVTFA--LRPPGARLQVPSEQALMELVDKAFSERRKKMRNSLSPL 193 >gi|307092014|gb|ADN28342.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I ++ V+EIG G G LT++LL A V+ IE D++ L++ + Sbjct: 2 DGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLA-EAGTVLAIEMDRRLMDYLRERFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++L ++ DDAL + + +++ANLPY++ + +L Sbjct: 61 NQ-SQLTLLHDDALGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103 >gi|212722044|ref|NP_001131280.1| hypothetical protein LOC100192593 [Zea mays] gi|194691072|gb|ACF79620.1| unknown [Zea mays] Length = 159 Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 14/98 (14%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L IA + G V+E+G G GNLT LL A +V +E D Sbjct: 50 KPRGQHLLTNPRVLDAIARHAAISPGDAVLEVGPGTGNLTARLLASQAARVTAVEID--- 106 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 P +E + A + F + P R Sbjct: 107 -----------PRMVEAVTARAAALGLAHKFKVRPPAR 133 >gi|3294231|emb|CAA11706.1| mono-methyl transferase [Streptomyces ambofaciens] Length = 259 Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 29/202 (14%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 V+E+GAG G LT+ L +R++ E D + P L+ + P+ + ++ D L Sbjct: 39 VLEVGAGKGALTEPLARR-SRELHAYEIDSRLVPGLRTRFAAAPH-VRVVAGDFLAARPP 96 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 + +P + N+P++ T + +W P TL+ Q E A+K + Sbjct: 97 R-----TPFSVAGNVPFSR-TADIVDWCLGA---PALTDATLITQLEY-----ARKRTGD 142 Query: 171 YGRLSVLT-------GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLES 221 YGR ++LT WR ++ +S + F P+P+V + V+ P+ Sbjct: 143 YGRWTLLTVRTWPHHEWR----LVGRVSRYGFRPAPRVDAGVLRIERRATPLLTGAAQHG 198 Query: 222 LKKITQEAFGKRRKTLRQSLKR 243 + + + F +L SL+R Sbjct: 199 WRDLVELGFSGVGGSLHASLRR 220 >gi|307091896|gb|ADN28283.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 10/124 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88 +D ++ +++A + G+ G V ++GAG G LT L GAR V+ +E D + L + Sbjct: 1 VDRSLARRMAATVGA--GELVFDLGAGTGALTIPLARAGAR-VVSVEADPTWADRLLGRL 57 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + + +E++ D L V S P R+++N PY I T LL + P+ Sbjct: 58 VGAGLSGNVELVVGDILDVPLP-----SEPYRVVSNPPYGITTALLRRLLERPERGPYRA 112 Query: 149 SLTL 152 L L Sbjct: 113 DLLL 116 >gi|307092016|gb|ADN28343.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%) Query: 32 DLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I S+ +L G V+EIG G G LT++LLT A V+ I+ DQ+ LK+ Sbjct: 2 DGNQLRRIV-SAAALKGTDKVLEIGPGLGPLTELLLT-EAGSVLAIDLDQRLVDFLKERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++ N L + DDA + + +++ANLPY++ + +L Sbjct: 60 AETKN-LTLPHDDAPGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103 >gi|306834410|ref|ZP_07467525.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC 700338] gi|62467678|gb|AAX84025.1| erythromycin ribosome methylase [Streptococcus pasteurianus] gi|288856432|emb|CAY48681.1| 23S rRNA methylase [Staphylococcus aureus subsp. aureus ST398] gi|296777676|gb|ADH43093.1| erythromycin rRNA methylase protein [uncultured bacterium MID12] gi|304423439|gb|EFM26590.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC 700338] Length = 244 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 22/250 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ S L++ +++ I F P P+V S++ Sbjct: 123 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264 I H P L+ K+ K + + +L +N +QA + N+ Sbjct: 174 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYIKLFSKNQFYQALKYARIDDLNNI 227 Query: 265 SIEDFCRITN 274 S E F + N Sbjct: 228 SFEQFLSLFN 237 >gi|164604807|gb|ABY61964.1| erythromycin resistance methylase [Streptococcus suis] Length = 228 Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 15 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 69 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 70 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 121 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 122 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 166 >gi|159161735|gb|ABW95861.1| ErmB [uncultured bacterium] Length = 213 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|2317796|gb|AAC45552.1| rRNA N-6-methyltransferase [Staphylococcus chromogenes] Length = 244 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+ YNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|159161757|gb|ABW95872.1| ErmB [uncultured bacterium] Length = 213 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 + L +L + + + F P PKV S +I H +P L Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253 + KR ++L +N HQA Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200 >gi|2764999|emb|CAA70208.1| adenine methylase [Staphylococcus hyicus] Length = 244 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 23/185 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141 ++ H N +++ D L+ F K + +I ++PYNI T +++F I+ + Sbjct: 68 TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGSIPYNISTDIIRKVVFESIADE 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L+ + +R+ K S L++L +++ + F P PKV Sbjct: 123 SY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169 Query: 202 TSTVI 206 S++I Sbjct: 170 NSSLI 174 >gi|256825598|ref|YP_003149558.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus sedentarius DSM 20547] gi|256688991|gb|ACV06793.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus sedentarius DSM 20547] Length = 244 Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 + DG +IEIG G G LT L LG R V +E D + L + H +E++ DD Sbjct: 2 AATDG-PIIEIGPGDGALTSPLAQLG-RPVTAVEIDTRLAQRLAERLGPH---VEVVADD 56 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 L ++ ++ NLP++ T +L + + P W +L Q EV R Sbjct: 57 FLAYRLPTSAHV-----LVGNLPFHQTTAMLRQILHS----PAWTDAIVLVQWEVARR 105 >gi|83702392|gb|ABC41552.1| erythromycin ribosome methylase [Gemella morbillorum] Length = 213 Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 15/182 (8%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L +I + + T EIG G G+LT L + +++V IE D F + D + Sbjct: 3 VLNQIIKQLNLKETDTFYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSD-KLKLN 60 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 R+ +I D L+ F +I+ N+PY++ T++ I + + L+ Sbjct: 61 IRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIV 112 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 ++ +R + L +L + + + F P PKV+S +I H Sbjct: 113 EEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVSSVLIKLTRHTTD 167 Query: 215 IP 216 +P Sbjct: 168 VP 169 >gi|2326854|emb|CAA70206.1| adenine methylase [Staphylococcus hominis] Length = 244 Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 89/227 (39%), Gaps = 24/227 (10%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 + EIG+G G+ T + L V IE D + + H N +++ D L+ F Sbjct: 33 NIFEIGSGKGDFT-LELVQRCNFVTAIEIDHKLCKTTEKKLVDHDN-FQVLNKDILQFKF 90 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 K + +I N+PYNI T + I + + + L+ + +R+ K S Sbjct: 91 PK----NQSYKIFGNIPYNISTDI----IRKIVFDSIADEIYLIVEYGFAKRLLNTKRS- 141 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 L++ +++ + F P PKV S++I LN + K Sbjct: 142 ----LALFLMAEVDISILSMVPREYFHPKPKVNSSLI----RLNRKKSRISHKDKQKYNY 193 Query: 230 FGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 F + K ++ + N L AGI+ N+S E F + N Sbjct: 194 FVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNNISFEQFLSLFN 237 >gi|124365209|gb|ABN09636.1| ErmB [Streptococcus pyogenes] Length = 198 Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVFEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|159161716|gb|ABW95852.1| ErmB [uncultured bacterium] gi|159161739|gb|ABW95863.1| ErmB [uncultured bacterium] gi|159161747|gb|ABW95867.1| ErmB [uncultured bacterium] gi|159161753|gb|ABW95870.1| ErmB [uncultured bacterium] gi|159161772|gb|ABW95879.1| ErmB [uncultured bacterium] gi|159161800|gb|ABW95893.1| ErmB [uncultured bacterium] gi|159161803|gb|ABW95894.1| ErmB [uncultured bacterium] Length = 213 Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|322820265|gb|EFZ26937.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi] Length = 482 Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust. Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%) Query: 117 SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + + ++ANLP+++ T LL + + + L + QKE+ ERI A S H+ Sbjct: 281 AKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEIAERIIAPAGSIHF 340 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF- 230 RLSVL M ++P +V ++ P P+ +++ I Sbjct: 341 SRLSVLCQCFFHVQMRQTFKEMTYYPKTEVLGAMLTLQPRSVPLVPGMDAATLIHFTDLL 400 Query: 231 ---GKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 G+R T+ ++L + + +L + ++ L +L+ E+ C++ Sbjct: 401 MKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEICKLA 450 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGP 58 K+ LK + +K+ Y+ Q F+L+L I+ ++ ++ ++E+G G Sbjct: 70 KAEGLKHL---FKVPHAGYLAKYDQRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGT 126 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 G LT+ LLT V+ IE D++F L+ I + + D L+V+ Sbjct: 127 GALTRSLLTRPCVAVLGIEADERFNAHLEQIRQYTDGKFHWVNADVLRVN 176 >gi|159161718|gb|ABW95853.1| ErmB [uncultured bacterium] gi|159161726|gb|ABW95857.1| ErmB [uncultured bacterium] gi|159161743|gb|ABW95865.1| ErmB [uncultured bacterium] gi|159161749|gb|ABW95868.1| ErmB [uncultured bacterium] gi|159161770|gb|ABW95878.1| ErmB [uncultured bacterium] gi|159161796|gb|ABW95891.1| ErmB [uncultured bacterium] Length = 213 Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|307091878|gb|ADN28274.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ I ++ V+E+G G G+LT + + A ++ +E D+ F P+ +++ Sbjct: 1 IDLNLIDLIGRTAELSKADAVLEVGTGTGSLTARMAS-EAGMIVTVEIDRSFAPVAQEVI 59 Query: 91 SQHPNRLEIIQD-----DALKVDFEKFFNISSPI------RIIANLPYNIGTRLLFNWIS 139 + N + D L ++ ++ + +++ANLPY I T L+ N + Sbjct: 60 GRRGNVRHVFGDCLAKKSELNPSMLAAWDEAAKLPGIKHRKLVANLPYVIATPLISNLLC 119 Query: 140 AD 141 +D Sbjct: 120 SD 121 >gi|332796502|ref|YP_004458002.1| rRNA adenine methylase transferase [Acidianus hospitalis W1] gi|332694237|gb|AEE93704.1| rRNA adenine methylase transferase [Acidianus hospitalis W1] Length = 218 Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 30/185 (16%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 + QNFL+D + K + + D V+E+G G GN+++++ + IE D +F Sbjct: 3 LSQNFLIDKFFIFKFSSYVKN-DIKPVVEVGCGKGNISKVI-----NPDLCIEIDDKFIK 56 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 LK + +I DA +F I +I+++LPY+I D Sbjct: 57 YLKSYN--------LIIADA------RFLPIKRG-QIVSSLPYSITEDFFLEVSKLDQVI 101 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 SL L+ QK+ ++I N Y +S L + I P F PSPKV S Sbjct: 102 ----SLVLILQKDFIDKIL---NYATY--ISFLLNYIFDIKTHEVIPPSAFTPSPKVYSI 152 Query: 205 VIHFI 209 ++ F+ Sbjct: 153 IVTFM 157 >gi|3646270|emb|CAA08815.1| putative dimethyladenosine transferase [Homo sapiens] Length = 157 Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220 R+ A+ Y RLS+ T + + + + F P PKV S+V+ P P P + Sbjct: 6 RLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQ 65 Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNI 275 + + F ++ KTL + K + LL + + + E+ SI D +I I Sbjct: 66 EWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIAD--KIQQI 123 Query: 276 LT 277 LT Sbjct: 124 LT 125 >gi|82698219|gb|ABB89115.1| erythromycin resistance protein [Streptococcus pyogenes] gi|91983298|gb|ABE68714.1| erythromycin resistance protein [Streptococcus pyogenes] gi|126583349|gb|ABO21677.1| ErmB [Streptococcus uberis] Length = 198 Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|307091998|gb|ADN28334.1| putative rRNA methyltransferase [uncultured bacterium] Length = 114 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D ++ ++A + + G V+++GAG G LT + GAR V+ +E D + L Sbjct: 1 VDRSVAARMAATVTA--GELVLDLGAGTGALTVPMAEAGAR-VVAVEADPVWAEKLAGRL 57 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 ++ +E++ D L V S P R++AN P+ + T LL + P+ L Sbjct: 58 AKSGLTVEVVAGDILAVPLP-----SEPYRVVANPPFGVTTALLRRLLDQPERGPYQADL 112 Query: 151 TL 152 L Sbjct: 113 LL 114 >gi|2245604|gb|AAB62551.1| adenine N-6-methyltransferase [Enterococcus faecalis] Length = 219 Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 6 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 60 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 61 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 112 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV +I H +P Sbjct: 113 RT-----LGLLLHTQVSIQQLLKLPXECFHPKPKVNGVLIKLTRHTTDVP 157 >gi|159161728|gb|ABW95858.1| ErmB [uncultured bacterium] Length = 213 Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKEVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|18657023|gb|AAL78110.1|AC093568_20 Putative dimethyladenosine transferse [Oryza sativa] gi|21321757|gb|AAM47292.1|AC122146_11 Putative dimethyladenosine transferse [Oryza sativa Japonica Group] Length = 120 Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +K GQ+ L + ++ I E +G TV+EIG G GNLT+ LL G + V+ +E D Sbjct: 35 EKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELD 92 >gi|81174759|gb|ABB58921.1| ErmA [Streptococcus pyogenes] gi|81174761|gb|ABB58922.1| ErmB [Streptococcus pyogenes] gi|82698215|gb|ABB89113.1| erythromycin resistance protein [Streptococcus pyogenes] gi|82698217|gb|ABB89114.1| erythromycin resistance protein [Streptococcus pyogenes] gi|124365205|gb|ABN09634.1| ErmB [Streptococcus pneumoniae] gi|124365211|gb|ABN09637.1| ErmB [Streptococcus pneumoniae] gi|126693546|gb|ABO26567.1| ErmB [Streptococcus agalactiae] Length = 198 Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|159161733|gb|ABW95860.1| ErmB [uncultured bacterium] Length = 213 Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ ++PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTNVP 169 >gi|159161737|gb|ABW95862.1| ErmB [uncultured bacterium] gi|159161745|gb|ABW95866.1| ErmB [uncultured bacterium] gi|159161768|gb|ABW95877.1| ErmB [uncultured bacterium] gi|159161794|gb|ABW95890.1| ErmB [uncultured bacterium] Length = 213 Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|159161751|gb|ABW95869.1| ErmB [uncultured bacterium] Length = 213 Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTHVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|124365203|gb|ABN09633.1| ErmB [Streptococcus pyogenes] Length = 191 Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|90660160|gb|ABD97341.1| erythromycin resistance protein [Streptococcus pneumoniae] Length = 191 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|159161720|gb|ABW95854.1| ErmB [uncultured bacterium] gi|159161724|gb|ABW95856.1| ErmB [uncultured bacterium] Length = 213 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVDSVLIKLTRHTTDVP 169 >gi|307091940|gb|ADN28305.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 16/123 (13%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDI 89 +DLN+L+ I ++ V+E+G G G+LT Q+ L GA V +E D P+ + I Sbjct: 1 IDLNLLELIVRTAELDSSDAVLEVGTGTGSLTSQLALRSGA--VCTVEIDTGLAPVARQI 58 Query: 90 SSQHPNRLEIIQDDALKVD-------FEKFFNISSPIR-----IIANLPYNIGTRLLFNW 137 + N + + D L + +++ R ++ANLPY+I T L+ N Sbjct: 59 VGESHN-VRFVHADCLSKKSLLNPEMLTAWDEVAAKHRCTRRKLVANLPYSIATPLISNL 117 Query: 138 ISA 140 + A Sbjct: 118 LVA 120 >gi|159161764|gb|ABW95875.1| ErmB [uncultured bacterium] Length = 213 Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGRGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|89242975|gb|ABD64743.1| erythromycin resistance protein [Streptococcus pyogenes] Length = 191 Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|90994360|gb|ABE03746.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] Length = 198 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|90103248|gb|ABD85469.1| erythromycin resistance methylase [Streptococcus pyogenes] Length = 191 Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 12 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 67 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|730033|sp|Q00014|ERMG_LACRE RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|148728|gb|AAA98096.1| methylase [Plasmid pGT633] Length = 244 Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust. Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 22/250 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ + L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFS-FELAKRCNYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGNIPYNISTDIIRKIVFESTATE 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ S L++ +++ I F P P+V S++ Sbjct: 123 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264 I H P L+ K+ K + + +L +N +QA + N+ Sbjct: 174 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYIKLFSKNQFYQALKYARIDDLNNI 227 Query: 265 SIEDFCRITN 274 S E F + N Sbjct: 228 SFEQFLSLFN 237 >gi|195394850|ref|XP_002056052.1| GJ10435 [Drosophila virilis] gi|194142761|gb|EDW59164.1| GJ10435 [Drosophila virilis] Length = 471 Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 G TV+E+ GPG T+ LL RK+I+IE + F P L+++ + +P+R+++ Sbjct: 79 GQTKCDTVLELNPGPGYFTKHLLDRETQFRKIILIESMEHFMPRLQELHALYPDRVKVRH 138 Query: 102 DD 103 D Sbjct: 139 GD 140 >gi|14521938|ref|NP_127415.1| methyltransferase related protein [Pyrococcus abyssi GE5] gi|5459158|emb|CAB50644.1| Methyltransferase related protein [Pyrococcus abyssi GE5] Length = 208 Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 +A + G ++G + ++GAG G L+ L+LGA+KV +E D+ ILK + + E Sbjct: 39 MAYTLGDIEGKVIADLGAGTGVLSYGALSLGAKKVYAVEVDEDAVEILKTNLKKFEGKFE 98 Query: 99 IIQDD 103 + D Sbjct: 99 VFIGD 103 >gi|159161807|gb|ABW95896.1| ErmB [uncultured bacterium] Length = 213 Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T+++ + +ES + V E + Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQIIKKVV--------FESHASVIYLIVEEGFYKRT 120 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 H L +L + + + F P PKV S +I H +P Sbjct: 121 LDIH-RTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|109019771|ref|XP_001088795.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Macaca mulatta] gi|90085601|dbj|BAE91541.1| unnamed protein product [Macaca fascicularis] Length = 396 Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++E GPG LT+ LL GA V+ +E D+ F P L+ + +L +I D ++D Sbjct: 99 LLECNPGPGILTEALLEAGA-TVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFRIDPR 157 Query: 111 KFFNISSPIRIIANLPYNIGT 131 I P L N+G Sbjct: 158 SGGAIKPPAMSSEGLFKNLGV 178 >gi|124365207|gb|ABN09635.1| ErmB [Streptococcus pyogenes] Length = 191 Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 21/169 (12%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV 107 V EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 13 VYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQF 67 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 68 QFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIHR 119 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 120 T-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163 >gi|307092030|gb|ADN28350.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I ++ V+EIG G G LT++LL A V+ IE D++ L++ + Sbjct: 2 DGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLA-EAGTVLAIEMDRRLMDYLRERFA 60 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 ++L ++ DDAL + + +++ANLPY++ + +L Sbjct: 61 NL-SQLTLLHDDALGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103 >gi|2407671|gb|AAC33146.1| rRNA N-6-methyltransferase [Staphylococcus simulans] Length = 244 Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 24/251 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T + L V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+ YNI T + I + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDI----IRKIVFDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I LN + K F + K ++ + N L AGI+ N Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226 Query: 264 LSIEDFCRITN 274 +S E F + N Sbjct: 227 ISFEQFLSLFN 237 >gi|78066348|ref|YP_369117.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383] gi|77967093|gb|ABB08473.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383] Length = 238 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%) Query: 47 DGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 DG TVIE+GAG G T+ LL G + +++++E D F L+ Q P L I+Q DA Sbjct: 41 DGATVIELGAGTGVFTRALLARGVASDRLVLVEADPAFANTLRH---QFPA-LRIMQMDA 96 Query: 105 LKVDFE-KFFNISSPIRIIANLP 126 + + FF + +++ LP Sbjct: 97 VHLGMTGDFFGGARADAVVSGLP 119 >gi|84663565|gb|ABC60096.1| erythromycin ribosome methylase [Gemella haemolysans] Length = 213 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ N+PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFSKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHLKPKVNSVLIKLTRHTTDVP 169 >gi|159161792|gb|ABW95889.1| ErmB [uncultured bacterium] Length = 213 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 18 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 73 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 124 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 125 RT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169 >gi|55378762|ref|YP_136612.1| hypothetical protein rrnAC2049 [Haloarcula marismortui ATCC 43049] gi|55231487|gb|AAV46906.1| unknown [Haloarcula marismortui ATCC 43049] Length = 261 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103 ++G +E GAG GN T LL GA++V + D ++D I ++ +RL +I+ D Sbjct: 37 VEGRVCLEAGAGVGNTTAGLLAAGAKRVYAVTNDADHAATVRDRIGDRNADRLAVIEAD 95 >gi|315607569|ref|ZP_07882564.1| possible DNA-methyltransferase [Prevotella buccae ATCC 33574] gi|315250752|gb|EFU30746.1| possible DNA-methyltransferase [Prevotella buccae ATCC 33574] Length = 477 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G T++E AG GN+ L GA KVI EKD +L + +II DD L V Sbjct: 29 GKTILEPSAGKGNIVDWLKKNGAGKVIACEKDTNIKKLLN-------GKCDIIADDFLTV 81 Query: 108 DFEKFFNISSPIRIIANLPYNIGTR 132 E+ IS I+ N P++ G + Sbjct: 82 SSEQ---ISHVDYIVMNPPFSEGAK 103 >gi|33413476|gb|AAM97535.1| ErmC [Trypanosoma brucei] Length = 467 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 119 IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + +IANLP+NI T LL + + + L + Q+EV E I A S H+ R Sbjct: 281 LEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEVAECIIAPAGSIHFSR 340 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF--- 230 LSVL ++ ++P V +I P P+ L L T F Sbjct: 341 LSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPL---LPGLDAATLIHFTDL 397 Query: 231 ----GKR----RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 G+R K L+Q + + +L + + L +L+ E+ C++ + Sbjct: 398 LMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVCKLATL 450 Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%) Query: 6 KSHSLKTILSHYKIIPKKYM---GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGP 58 K+ LK + +K+ Y+ GQ F+L+L + ++A ++ ++E+G G Sbjct: 49 KAEGLKQL---FKVPHAGYLAKYGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGA 105 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 G LT+ LLT V+ IE+D++F L+ I + + D L+++ Sbjct: 106 GALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRIN 155 >gi|299141639|ref|ZP_07034775.1| conserved hypothetical protein [Prevotella oris C735] gi|298576975|gb|EFI48845.1| conserved hypothetical protein [Prevotella oris C735] Length = 477 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G T++E AG GN+ L GA KVI EKD +L + +II DD L V Sbjct: 29 GKTILEPSAGKGNIVDWLKKNGAGKVIACEKDTNIKKLLN-------GKCDIIADDFLTV 81 Query: 108 DFEKFFNISSPIRIIANLPYNIGTR 132 E+ IS I+ N P++ G + Sbjct: 82 SSEQ---ISHVDYIVMNPPFSEGAK 103 >gi|126693572|gb|ABO26571.1| ErmB [Streptococcus agalactiae] Length = 198 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 11 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F +I+ ++PY++ T++ I + + L+ ++ +R Sbjct: 66 FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 117 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 + L +L + + + F P PKV S +I H +P Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162 >gi|71747126|ref|XP_822618.1| rRNA dimethyltransferase [Trypanosoma brucei TREU927] gi|70832286|gb|EAN77790.1| rRNA dimethyltransferase, putative [Trypanosoma brucei] Length = 467 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 119 IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + +IANLP+NI T LL + + + L + Q+EV E I A S H+ R Sbjct: 281 LEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEVAECIIAPAGSIHFSR 340 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF--- 230 LSVL ++ ++P V +I P P+ L L T F Sbjct: 341 LSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPL---LPGLDAATLIHFTDL 397 Query: 231 ----GKR----RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 G+R K L+Q + + +L + + L +L+ E+ C++ + Sbjct: 398 LMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVCKLATL 450 Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%) Query: 6 KSHSLKTILSHYKIIPKKYM---GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGP 58 K+ LK + +K+ Y+ GQ F+L+L + ++A ++ ++E+G G Sbjct: 49 KAEGLKQL---FKVPHAGYLAKYGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGA 105 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 G LT+ LLT V+ IE+D++F L+ I + + D L+++ Sbjct: 106 GALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTNGKFQWTNGDVLRIN 155 >gi|159161774|gb|ABW95880.1| ErmB [uncultured bacterium] Length = 213 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ N+PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P P V S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPIVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|207340778|gb|EDZ69021.1| YPL266Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 204 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 I+N PY I + L+F I+ P L+FQ+E R+ A+ Y RLS Sbjct: 12 ISNTPYQISSPLVFKLINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMW 68 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHF 208 T + + + F P P+V S+V+ Sbjct: 69 ANVTHIMKVGKNNFRPPPQVESSVVRL 95 >gi|169883510|gb|ACA97850.1| putative dimethyladenosine transferase [VK grapevine yellows phytoplasma type A] Length = 396 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 47 DGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD-------ISSQHPNRLE 98 DG ++E+GAG GN+T+ L+ G + VI +E D +L+D I N ++ Sbjct: 282 DGEKILELGAGSGNVTKYLIKKFGVKNVIALEYDNHLCQVLRDKYKGLQVIEGDACNFIK 341 Query: 99 IIQDDALKVD 108 ++QD + +D Sbjct: 342 LLQDKNVGID 351 >gi|149040853|gb|EDL94810.1| transcription factor B2, mitochondrial [Rattus norvegicus] Length = 367 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 ++E GPG LT LL GAR V+ E ++ F P L+ + L+++ D K+D Sbjct: 99 ILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKNADGELQVVHCDFFKID 155 >gi|164687690|ref|ZP_02211718.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM 16795] gi|457208|gb|AAC36915.1| 23S rRNA methlyase [Clostridium perfringens] gi|164603464|gb|EDQ96929.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM 16795] gi|1092864|prf||2102192A 23S rRNA methylase Length = 257 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 11/184 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 + QNF+ N + K+ + + VIEIG G G++T+ L + V IE D+ + Sbjct: 16 VSQNFITSKNTIYKLIKKTNISKNDFVIEIGPGKGHITEALCE-KSYWVTAIELDRSLYG 74 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L + + N + +I D L K ++ +N+P+ I T+++ + + Sbjct: 75 NLIN-KFKSKNNVTLINKDFLNWKLPK----KREYKVFSNIPFYITTKIIKKLLLEELNS 129 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 P + L+ +K +R P +LS+L + ++ + F P P V Sbjct: 130 P--TDMWLVMEKGSAKRFMG---IPRESKLSLLLKTKFDIKIVHYFNREDFHPMPSVDCV 184 Query: 205 VIHF 208 +++F Sbjct: 185 LVYF 188 >gi|307091866|gb|ADN28268.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 16/128 (12%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN+L I ++G VIE+G+G G LT + A V+ +E D F+ + ++ + Sbjct: 1 IDLNLLDVIINAAGLSKDDLVIEVGSGTGGLTARHVE-EAGAVLSVEIDPAFYQLTQE-T 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSP------------IRIIANLPYNIGTRLLFNWI 138 + R+ +I D L+ + + P ++++ANLPY + T ++ N++ Sbjct: 59 IRESERVVLINADVLETKNKLNPEVLEPLARLRESSGLKRLKLVANLPYAVATPVISNFL 118 Query: 139 SADTWPPF 146 D PF Sbjct: 119 LTDL--PF 124 >gi|307091864|gb|ADN28267.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 4/105 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D + L++I E + V+EIG G G LT++L+ A V+ IE D++ IL+ S Sbjct: 2 DAHQLRRIIELARLQPDDFVLEIGPGLGPLTELLVEKSAH-VLAIELDRRLIEILE--SH 58 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 +L+I+ D L +K + S+ ++++NLPY++ + +L Sbjct: 59 LQSPKLKIVHGDGLGYVRDKTRDWSN-WKLVSNLPYSVASPILVE 102 >gi|56605644|ref|NP_001008294.1| dimethyladenosine transferase 2, mitochondrial [Rattus norvegicus] gi|81883501|sp|Q5U2T7|TFB2M_RAT RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|55249767|gb|AAH85870.1| Transcription factor B2, mitochondrial [Rattus norvegicus] Length = 397 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 ++E GPG LT LL GAR V+ E ++ F P L+ + L+++ D K+D Sbjct: 99 ILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKNADGELQVVHCDFFKID 155 >gi|164653711|gb|ABY65241.1| erythromycin resistance methylase [Streptococcus suis] gi|164653713|gb|ABY65242.1| erythromycin resistance methylase [Streptococcus suis D9] Length = 198 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 VIEIG+G G+ T+ L+ + +R V IE D+ + + + N +++I D LK +F Sbjct: 2 NVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNF 59 Query: 110 EKFFNISSPIRIIANLPYNIGTRLL 134 K + +I N+P+NI T ++ Sbjct: 60 PK----NKDYKIFGNIPFNISTDIV 80 >gi|311894003|dbj|BAJ26411.1| hypothetical protein KSE_05680 [Kitasatospora setae KM-6054] Length = 202 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQ+FL I ++ E +G G V+E+GAG G L+ + G R + +EKD + Sbjct: 27 RRDLGQHFLRSPGIATRLLELAGLHAGDAVLEVGAGLGTLSAAVARAGHR-IWAVEKDPR 85 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 L + R + D VD ++ + + Sbjct: 86 VAEALCAALEPYGERARPLLSDVRAVDLDRELPVGT 121 >gi|155965922|gb|ABU40943.1| erythromycin resistance methylase [Streptococcus suis] Length = 208 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 VIEIG+G G+ T+ L+ + +R V IE D+ + + + N +++I D LK +F Sbjct: 20 NVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNF 77 Query: 110 EKFFNISSPIRIIANLPYNIGTRLL 134 K + +I N+P+NI T ++ Sbjct: 78 PK----NKDYKIFGNIPFNISTDIV 98 >gi|218473458|emb|CAV31168.1| hypothetical protein [Streptococcus pneumoniae] Length = 211 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF 109 EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ F Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQFQF 55 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 +I+ N+PY++ T++ I + + L+ ++ +R + Sbjct: 56 PN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIHRT- 106 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 L +L + + + F P PKV S +I H +P Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149 >gi|261332379|emb|CBH15374.1| rRNA dimethyltransferase, putative [Trypanosoma brucei gambiense DAL972] Length = 467 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 119 IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + +IANLP+NI T LL + + + L + Q+EV E I A S H+ R Sbjct: 281 LEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEVAECIIAPAGSIHFSR 340 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF--- 230 LSVL ++ ++P V ++ P P+ L L T F Sbjct: 341 LSVLCQCFFHTQLLRTFREMTYYPKTAVLGALVTLQPRAVPL---LPGLDAATLIHFTDL 397 Query: 231 ----GKR----RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 G+R K L+Q + + +L + + L +L+ E+ C++ + Sbjct: 398 LMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTAEEVCKLATL 450 Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%) Query: 6 KSHSLKTILSHYKIIPKKYM---GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGP 58 K+ LK + +K+ Y+ GQ F+L+L + ++A ++ ++E+G G Sbjct: 49 KAEGLKQL---FKVPHAGYLAKYGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGA 105 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 G LT+ LLT V+ IE+D++F L+ I + + D L+++ Sbjct: 106 GALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRIN 155 >gi|213626131|gb|AAI71547.1| Transcription factor B2, mitochondrial [Danio rerio] Length = 437 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 47 DGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 DG VI E GPG LT+ LL GA++V+ +E D F P L ++ S+ +L+++ D Sbjct: 132 DGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPELLELESRLEGQLDVVHCDFF 191 Query: 106 KVD 108 K+D Sbjct: 192 KLD 194 >gi|159161766|gb|ABW95876.1| ErmB [uncultured bacterium] Length = 213 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 29/189 (15%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISADTWPPFW 147 R+ +I D L+ F +I+ ++PY++ T +++F ++D + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESRASDIYL--- 110 Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207 V E ++ + L +L + + + F P PKV S +I Sbjct: 111 ----------VVEEGFYKRTLDIHRTLGLLLHPQVSIQQLLKLPAECFHPKPKVNSVLIK 160 Query: 208 FIPHLNPIP 216 H +P Sbjct: 161 LTRHTTDVP 169 >gi|165972415|ref|NP_001107089.1| dimethyladenosine transferase 2, mitochondrial [Danio rerio] gi|159155139|gb|AAI54810.1| Tfb2m protein [Danio rerio] Length = 437 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 47 DGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 DG VI E GPG LT+ LL GA++V+ +E D F P L ++ S+ +L+++ D Sbjct: 132 DGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPELLELESRLEGQLDVVHCDFF 191 Query: 106 KVD 108 K+D Sbjct: 192 KLD 194 >gi|326392388|ref|ZP_08213803.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter ethanolicus JW 200] gi|325991572|gb|EGD50149.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter ethanolicus JW 200] Length = 59 Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 21/40 (52%), Positives = 25/40 (62%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 GQNF+ D NIL KI +SG V+EIG G G LT+ L Sbjct: 13 GQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEEL 52 >gi|307091926|gb|ADN28298.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 12/122 (9%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ I+ ++ V+E+G G G+LT L A +V+ IE D+ F P+ + Sbjct: 1 IDLNLIDLISRTAEPSKADAVLEVGTGTGSLTAR-LAAEAGQVVTIEIDRTFQPVAQQTV 59 Query: 91 SQHPNRLEIIQDDALK---VDFEKFFNISSPI--------RIIANLPYNIGTRLLFNWIS 139 N ++ D K ++ E +++ANLPY I T L+ N + Sbjct: 60 GPRENMTYLLGDCLAKKSELNPEMLATWDEAAAKPGITTRKLVANLPYVIATPLISNLLC 119 Query: 140 AD 141 ++ Sbjct: 120 SE 121 >gi|146285381|gb|ABQ18266.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDF 109 EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ F Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQFQF 55 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 +I+ N+PY++ T++ I + + L+ ++ +R + Sbjct: 56 PN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIHRT- 106 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 L +L + + + F P PKV S +I H +P Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149 >gi|195572095|ref|XP_002104032.1| GD18660 [Drosophila simulans] gi|194199959|gb|EDX13535.1| GD18660 [Drosophila simulans] Length = 457 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ +GPG T+ LL + R++I++E F P ++++ + +P R+++ Q D Sbjct: 72 TVMELNSGPGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGD 127 >gi|307091874|gb|ADN28272.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD----QQFFPIL 86 +D + +++ E+ G+ G V+++GAG G LT L GAR V+ +E D ++ F L Sbjct: 1 VDRFLARRMVETVGA--GELVLDLGAGTGALTIPLAQAGAR-VVAVEADPVWAERLFGQL 57 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + + +E++ D L+V S P R+++N PY I T Sbjct: 58 --VGAGLSGMVELVVGDMLEVPLP-----SEPYRVVSNPPYGITT 95 >gi|169883512|gb|ACA97851.1| putative dimethyladenosine transferase [VK grapevine yellows phytoplasma type B] Length = 394 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Query: 47 DGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA- 104 DG ++E+GAG GN+T+ L+ G + VI +E D +L+D L++I+ DA Sbjct: 280 DGEKILELGAGSGNVTKYLIHKFGVKNVIALEYDNHLCQVLRD----KYEGLQVIEGDAC 335 Query: 105 --LKVDFEKFFNISSPIRIIANLPYNIGT 131 +K+ +K I I++ LP ++ T Sbjct: 336 NFIKLLKDKKVGIDKIKGIVSTLPLSVFT 364 >gi|307091972|gb|ADN28321.1| putative rRNA methyltransferase [uncultured bacterium] Length = 114 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V+++GAG G LT L GAR V+ +E D + L + +E++ D L V Sbjct: 16 GELVLDLGAGTGALTIPLAEAGAR-VVAVEADPVWAEKLAGRLAGSSLTVEVVAGDILAV 74 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 S P R+ AN P+ + T LL + P+ L L Sbjct: 75 PLP-----SEPFRVAANPPFGVTTALLRRLLDQPERGPYQADLLL 114 >gi|71411035|ref|XP_807784.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener] gi|70871858|gb|EAN85933.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi] Length = 482 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%) Query: 117 SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + + ++ANLP+++ T LL + + + L + QKE+ ERI A S H+ Sbjct: 281 AKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEIAERIIAPAGSIHF 340 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF- 230 RLSVL + ++P +V ++ P P+ +++ I Sbjct: 341 SRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPGMDAATLIHFTDLL 400 Query: 231 ---GKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 G+R T+ ++L + + +L + ++ L +L+ E+ C++ Sbjct: 401 MKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEICKLA 450 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGP 58 K+ LK + +K+ Y+ Q F+L+L I+ ++ ++ ++E+G G Sbjct: 70 KAEGLKHL---FKVPHAGYLAKYDQRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGT 126 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 G LT+ LLT V+ IE D++F L+ I + + D L+V+ Sbjct: 127 GALTRSLLTRPCVAVLGIEADERFNAHLEQIRQYTDGKFHWVNADVLRVN 176 >gi|307091910|gb|ADN28290.1| putative rRNA methyltransferase [uncultured bacterium] Length = 136 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 21/121 (17%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDIS 90 D N L +I ++ V+EIG G G LT++L A KV+ IEKD++ L K Sbjct: 2 DGNQLCRIIAAAELTGSDKVLEIGPGLGALTELLWA-QAGKVLAIEKDRRLIEFLQKRFG 60 Query: 91 SQH-----------------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 S+ PN +++ DDALK ++ S +++ANLPY++ + + Sbjct: 61 SEFRLQPVGHTRAEPPKGGTPN-FQLLHDDALKF-LKREQRDWSDWKLVANLPYSVASPI 118 Query: 134 L 134 L Sbjct: 119 L 119 >gi|71400767|ref|XP_803154.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener] gi|70865852|gb|EAN81708.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi] Length = 482 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%) Query: 117 SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + + ++ANLP+++ T LL + + + L + QKE+ ERI A S H+ Sbjct: 281 AKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEIAERIIAPAGSIHF 340 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF- 230 RLSVL + ++P +V ++ P P+ +++ I Sbjct: 341 SRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPGMDAATLIHFTDVL 400 Query: 231 ---GKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 G+R T+ ++L + + +L + ++ L +L+ E+ C++ Sbjct: 401 MKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEICKLA 450 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGP 58 K+ LK + +K+ Y+ Q F+L+L I+ ++ ++ ++E+G G Sbjct: 70 KAEGLKHL---FKVPHAGYLAKYDQRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGT 126 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 G LT+ LLT V+ IE D++F L+ I + + D L+V+ Sbjct: 127 GALTRSLLTRPCVAVLGIEADERFNAHLEQIRQYTDGKFHWVNADVLRVN 176 >gi|146271005|gb|ABQ17973.1| ribosomal methylase [Streptococcus uberis] gi|146285379|gb|ABQ18265.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF 109 EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ F Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQFQF 55 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 +I+ N+PY++ T++ I + + L+ ++ +R + Sbjct: 56 PN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIHRT- 106 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 L +L + + + F P PKV S +I H +P Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149 >gi|229820415|ref|YP_002881941.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae DSM 12333] gi|229566328|gb|ACQ80179.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae DSM 12333] Length = 196 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 F L + + + +G G TV+++GAG G LT L+ GAR VI +E+ L++ Sbjct: 13 FRLSPDWASTLVDRAGVEHGDTVLDLGAGAGALTGPLVDRGAR-VIALERHAGRVQRLRE 71 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 R + ++ D + P R++AN P+++ ++ + + A Sbjct: 72 -------RFDGRSVSVVEADIRDLRLPARPFRVVANPPFHLARPIVADLLGA 116 >gi|206560044|ref|YP_002230808.1| putative methyltransferase [Burkholderia cenocepacia J2315] gi|198036085|emb|CAR51980.1| putative methyltransferase [Burkholderia cenocepacia J2315] Length = 254 Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 47 DGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 DG +VIE+GAG G T+ LL G + +++++E D F L+ Q P L ++Q DA Sbjct: 41 DGASVIELGAGTGVFTRALLARGVASDRLVLVEADPAFANALRH---QFPA-LRVMQMDA 96 Query: 105 LKVDFE-KFFNISSPIRIIANLP 126 ++ FF I++ LP Sbjct: 97 AQLGMTGDFFGGERAHAIVSGLP 119 >gi|307091982|gb|ADN28326.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ + S+ V+EIG G G+LT L L A V+ +E D F + K+ Sbjct: 1 IDLNLVDFVVRSAELDRSDLVLEIGTGTGSLTAHLARL-AGSVLSVEIDPSFHQLAKETI 59 Query: 91 SQHPNRLEIIQDDALK----------VDFEKFFNISSP--IRIIANLPYNIGTRLLFNWI 138 + + + +I D L+ + + P ++++ANLPY + T ++ N + Sbjct: 60 GE-TSHVRLIHADVLENKNHLNPEVLTALREMMDTYQPQRLKLVANLPYAVATPVIANLL 118 Query: 139 SAD 141 D Sbjct: 119 MTD 121 >gi|149513367|ref|XP_001516033.1| PREDICTED: similar to transcription factor b1, partial [Ornithorhynchus anatinus] Length = 87 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 14/86 (16%) Query: 89 ISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-IRIIANLPYNIGTRLLFNW-- 137 +S P +L I+ D L + EK F + P I II NLP+++ T L+ W Sbjct: 2 LSEAAPGKLRIVHGDVLTFNVEKAFPRSLRREWDADPPNIHIIGNLPFSVSTPLIIKWLE 61 Query: 138 -ISADTWPPFW--ESLTLLFQKEVGE 160 IS P + +TL FQKEV E Sbjct: 62 NISRKDGPFIYGRTQMTLTFQKEVAE 87 >gi|14591689|ref|NP_143777.1| hypothetical protein PH1948 [Pyrococcus horikoshii OT3] gi|3258392|dbj|BAA31075.1| 207aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 207 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 +A S G ++G V ++GAG G L+ L LGA++VI +E D++ +L + + + + Sbjct: 41 LAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFK 100 Query: 99 IIQDDA 104 + D Sbjct: 101 VFIGDV 106 >gi|85543921|pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii gi|85543922|pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii gi|85543923|pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii gi|85543924|pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii Length = 207 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 +A S G ++G V ++GAG G L+ L LGA++VI +E D++ +L + + + + Sbjct: 41 LAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFK 100 Query: 99 IIQDD 103 + D Sbjct: 101 VFIGD 105 >gi|148704851|gb|EDL36798.1| mCG124508 [Mus musculus] Length = 398 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 24/124 (19%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 N+++ + E I ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 84 NLVRDLLEHQNPSRQI-ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNM 141 Query: 94 PNRLEIIQDDALKVD----------------FEKF------FNISSPIRIIANLPYNIGT 131 L+++ D K+D F+ ++ PI++ LPY Sbjct: 142 DGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHER 201 Query: 132 RLLF 135 R+L+ Sbjct: 202 RILW 205 >gi|307091860|gb|ADN28265.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L++I + + +V+EIG G G LT++L+ V+ IE D++ L+ S Sbjct: 2 DANQLRRIVDLARLNPDDSVLEIGPGLGPLTELLVE-KVGHVLAIELDRRLVEFLE--SH 58 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +L+I+ D L +K + S+ +++ANLPY++ + +L + P Sbjct: 59 LQSPKLKILHGDGLGYVRDKTRDWSN-WKLVANLPYSVASPILVELAESPNAP 110 >gi|193871|gb|AAA37817.1| house-keeping protein [Mus musculus] Length = 396 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 23/107 (21%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108 ++E GPG LT LL GAR V+ E ++ F P L+ + L+++ D K+D Sbjct: 98 ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNMDGELQVVHCDFFKMDPR 156 Query: 109 --------------FEKF------FNISSPIRIIANLPYNIGTRLLF 135 F+ ++ PI++ LPY R+L+ Sbjct: 157 YQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHERRILW 203 >gi|26354937|dbj|BAC41095.1| unnamed protein product [Mus musculus] Length = 396 Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 24/124 (19%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 N+++ + E I ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 82 NLVRDLLEHQNPSRQI-ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNM 139 Query: 94 PNRLEIIQDDALKVD----------------FEKF------FNISSPIRIIANLPYNIGT 131 L+++ D K+D F+ ++ PI++ LPY Sbjct: 140 DGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHER 199 Query: 132 RLLF 135 R+L+ Sbjct: 200 RILW 203 >gi|84490373|ref|NP_032275.2| dimethyladenosine transferase 2, mitochondrial [Mus musculus] gi|123796604|sp|Q3TL26|TFB2M_MOUSE RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=mTFB2M; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|74138927|dbj|BAE27262.1| unnamed protein product [Mus musculus] gi|74139560|dbj|BAE40917.1| unnamed protein product [Mus musculus] gi|74177744|dbj|BAE38967.1| unnamed protein product [Mus musculus] gi|74204361|dbj|BAE39934.1| unnamed protein product [Mus musculus] gi|74223284|dbj|BAE40774.1| unnamed protein product [Mus musculus] gi|148681221|gb|EDL13168.1| transcription factor B2, mitochondrial [Mus musculus] gi|187953023|gb|AAI38837.1| Transcription factor B2, mitochondrial [Mus musculus] gi|187954085|gb|AAI38838.1| Transcription factor B2, mitochondrial [Mus musculus] Length = 396 Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 24/124 (19%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 N+++ + E I ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 82 NLVRDLLEHQNPSRQI-ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNM 139 Query: 94 PNRLEIIQDDALKVD----------------FEKF------FNISSPIRIIANLPYNIGT 131 L+++ D K+D F+ ++ PI++ LPY Sbjct: 140 DGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHER 199 Query: 132 RLLF 135 R+L+ Sbjct: 200 RILW 203 >gi|297203193|ref|ZP_06920590.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] gi|197717356|gb|EDY61390.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] Length = 258 Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 21/198 (10%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++E+GAG G LT+ LL R ++ E D++ P+L S P + +I D L Sbjct: 38 LLEVGAGKGALTE-LLAPRCRTLLAYEIDERLVPVLAARFSGTPQ-VRVIGGDFLAARPP 95 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 + + + N+P++ T + +W P TLL Q E A+K + Sbjct: 96 R-----TAFSVAGNVPFSR-TAAIVDWCLRA---PALTDATLLTQVEY-----ARKRTGD 141 Query: 171 YGRLSVLT--GW-RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKI 225 YG ++LT W R + + + F P P+V + ++ P+ P L + + Sbjct: 142 YGSWTLLTVLNWPRYEWRLAGLVGRRSFRPVPRVDAGILRIERRGVPLLPPGALPGWRHL 201 Query: 226 TQEAFGKRRKTLRQSLKR 243 + F +L SL R Sbjct: 202 VELGFSGVGGSLHASLCR 219 >gi|149641645|ref|XP_001513371.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 295 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 GPG LT+ LL GAR V+ +E D F P L+ + + +LE++ D +D Sbjct: 7 GPGILTRALLQTGAR-VVALESDAAFLPHLQSLKNSLDGQLEVVHCDFFALD 57 >gi|159161741|gb|ABW95864.1| ErmB [uncultured bacterium] Length = 213 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 +L +I + + TV EIG G+LT L + +++V IE D F ++SS+ Sbjct: 3 VLNQIIKQLNLKETDTVYEIGTSKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57 Query: 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 R+ +I D L+ F +I+ ++PY++ T++ I + + Sbjct: 58 KLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIY 109 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 L+ ++ +R + L +L + + + F P PKV S +I H Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164 Query: 212 LNPIP 216 +P Sbjct: 165 TTDVP 169 >gi|114452118|gb|ABI75033.1| erythromycin resistance protein [uncultured bacterium] Length = 121 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 12/88 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 2 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 56 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLL 134 F +I N+PYN+ T+++ Sbjct: 57 FQFPN----KQRYKIFGNIPYNLSTKII 80 >gi|226876711|gb|ACO89576.1| Erm(41) [Mycobacterium abscessus] Length = 173 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 27/187 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE---- 60 Query: 82 FFPILKDISSQHPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L ++H R ++D + D F P R++A+ PY + + L+ + ++ Sbjct: 61 ----LHPGRARH-LRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLT 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ LL V +R K++ + +++ W +A + S F P Sbjct: 116 PES--------RLLAADLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPP 161 Query: 200 KVTSTVI 206 +V S+V+ Sbjct: 162 QVDSSVL 168 >gi|170780459|ref|YP_001716198.1| hypothetical protein pRW35_1 [Streptococcus pyogenes] gi|158523369|gb|ABW70817.1| ermT [Streptococcus pyogenes] Length = 242 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 24/250 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIEN---FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 120 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ S L++ +++ I F P P+V S++ Sbjct: 121 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 171 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264 I H P L+ K+ K + + +L +N +QA + N+ Sbjct: 172 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYIKLFSKNQFYQALKYARIDDLNNI 225 Query: 265 SIEDFCRITN 274 S E F + N Sbjct: 226 SFEQFLSLFN 235 >gi|195109498|ref|XP_001999321.1| GI23134 [Drosophila mojavensis] gi|193915915|gb|EDW14782.1| GI23134 [Drosophila mojavensis] Length = 471 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ GPG+ T+ LL RK+I++E + F P L+++ + +P R+++ D Sbjct: 85 TVMELNPGPGHFTRHLLDRETQFRKIILMESMEYFMPRLQELHALYPERVKVRYGD 140 >gi|197112113|gb|ACH43059.1| ribosome methyltransferase [Mycobacterium abscessus] Length = 173 Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 27/187 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE---- 60 Query: 82 FFPILKDISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L ++H R ++D + D F P R++A+ PY + + L+ + ++ Sbjct: 61 ----LHPGRARH-LRSRFAEEDVRIAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLT 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ LL V +R K++ + +++ W +A + S F P Sbjct: 116 PES--------RLLAADLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPP 161 Query: 200 KVTSTVI 206 +V S+V+ Sbjct: 162 QVDSSVL 168 >gi|226876715|gb|ACO89578.1| Erm(41) [Mycobacterium abscessus] Length = 173 Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 26/171 (15%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 +I SG G V+++GAG G LT L+ GAR V+ +E L ++H R Sbjct: 22 RIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE--------LHPGRARH-LRS 71 Query: 98 EIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 ++D + D F P R++A+ PY + + L+ + ++ ++ LL Sbjct: 72 RFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPES--------RLLAA 123 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 V +R K++ + +++ W +A + S F P+V S+V+ Sbjct: 124 DLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPPQVDSSVL 168 >gi|226876713|gb|ACO89577.1| Erm(41) [Mycobacterium abscessus] Length = 173 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 26/171 (15%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 +I SG G V+++GAG G LT L+ GAR V+ +E L ++H R Sbjct: 22 RIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE--------LHPGRARH-LRS 71 Query: 98 EIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 ++D + D F P R++A+ PY + + L+ + ++ ++ LL Sbjct: 72 RFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPES--------RLLAA 123 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 V +R K++ + +++ W +A + S F P+V S+V+ Sbjct: 124 DLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPPQVDSSVL 168 >gi|229822130|ref|YP_002883656.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333] gi|229568043|gb|ACQ81894.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333] Length = 266 Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 + ++ E G G EIG GPG T LL LGA ++ +E D + L++ P Sbjct: 33 VYDELVERCGLRPGTATFEIGPGPGTATGRLLELGADPLVAVEPDARLATFLRERFPDAP 92 >gi|46445793|ref|YP_007158.1| hypothetical protein pc0159 [Candidatus Protochlamydia amoebophila UWE25] gi|46399434|emb|CAF22883.1| hypothetical protein pc0159 [Candidatus Protochlamydia amoebophila UWE25] Length = 392 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI----IQDDA 104 + V++IG+GPG + L GAR+VI ++K+Q + D+ ++ L I +++D Sbjct: 99 VRVLDIGSGPGAFSFAALHHGAREVIALDKNQTALQLAADVCGRYGYPLTIRRHDLKNDD 158 Query: 105 LKVD 108 L VD Sbjct: 159 LPVD 162 >gi|207108392|ref|ZP_03242554.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_CA4C1] Length = 78 Score = 39.7 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLL 49 >gi|325569975|ref|ZP_08145934.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156942|gb|EGC69111.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 214 Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 12/91 (13%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 +L +IAE +G +V+E G+G GNLTQ LLT G + V+ IE P ++ I+ Sbjct: 36 QLLAEIAEKAGR----SVVEFGSGTGNLTQALLTQG-KNVLAIEPS----PEMRRIAKSK 86 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 P+ ++ D D E F I+ I I + Sbjct: 87 PSLSKVTFVDG---DMEVFPEITDVIDTIVS 114 >gi|298246976|ref|ZP_06970781.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] gi|297549635|gb|EFH83501.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 12/102 (11%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-----VIVIEKDQQFFPILK-DI 89 L++I E +G G+ V+EIG GPG+ T +L A + V +E + L+ + Sbjct: 81 LEQIVERAGVTPGMRVLEIGPGPGHFTTLLARRVAEQGKQGSVTCVELQPEMIARLRQQL 140 Query: 90 SSQHPNRLEIIQDDA-----LKVDFEKFFNISSPIRIIANLP 126 + N +EI+Q DA L F+ F +++ I + ++P Sbjct: 141 HREQVNNVEIVQGDAQQLPLLSASFDMVF-LATVIGEVPDMP 181 >gi|242398066|ref|YP_002993490.1| Predicted DNA methylase [Thermococcus sibiricus MM 739] gi|242264459|gb|ACS89141.1| Predicted DNA methylase [Thermococcus sibiricus MM 739] Length = 205 Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 +A S G ++G + ++GAG G L+ +GA+KV +EKD++ I K+ Sbjct: 39 LAHSMGDIEGKIIADLGAGTGVLSIGASLMGAKKVYAVEKDKKALEIAKE 88 >gi|260831178|ref|XP_002610536.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae] gi|229295903|gb|EEN66546.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae] Length = 448 Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K + ++LD + + + G L + + E+ GPG +T+ LL GA +++++E D Sbjct: 113 KSRIKNKYILDPALAAVVVDHLGDLSENKQWIFELNPGPGVVTRELLAAGASRILILEND 172 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + F P ++ D + V + FF I + P I + LFN I Sbjct: 173 RVFLPYSMALAKH--------VRDIVHVKYADFFRIDPMGDGVIKQP-AISSVELFNKIQ 223 Query: 140 ADTW 143 W Sbjct: 224 PAHW 227 >gi|146271003|gb|ABQ17972.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF 109 EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ F Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQFQF 55 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 +I+ ++PY++ T++ I + + L+ ++ +R + Sbjct: 56 PN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIHRT- 106 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 L +L + + + F P PKV S +I H +P Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149 >gi|114332454|ref|YP_748676.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrosomonas eutropha C91] gi|114309468|gb|ABI60711.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrosomonas eutropha C91] Length = 252 Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-FPILKDI 89 L LN + +IA LDG TV+++G G G L++ + GAR + D+ L + Sbjct: 57 LRLNYIDEIA----GLDGKTVVDVGCGGGILSESMAARGARVTGIDLSDKALKVAKLHLL 112 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 S H I +AL V+ + ++I + + ++ ++P Sbjct: 113 ESGHQVDYRKITVEALAVELPQHYDIVTCMEMLEHVP 149 >gi|194742245|ref|XP_001953616.1| GF17852 [Drosophila ananassae] gi|190626653|gb|EDV42177.1| GF17852 [Drosophila ananassae] Length = 454 Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ G G+ T+ LL R++I++E F P L+++ S +P R+++ Q D Sbjct: 72 TVMELNPGTGHFTRHLLDRETQFRRIILLESMDHFMPRLQELHSLYPERVKVRQGD 127 >gi|307568926|emb|CBX23404.1| ErmF protein [Bacteroides fragilis] Length = 68 Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE Sbjct: 4 KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62 Query: 78 KD 79 D Sbjct: 63 ND 64 >gi|146271001|gb|ABQ17971.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDF 109 EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ F Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQFQF 55 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 +I+ ++PY++ T++ I + + L+ ++ +R + Sbjct: 56 PN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIHRT- 106 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 L +L + + + F P PKV S +I H +P Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149 >gi|229077320|ref|ZP_04209997.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2] gi|228705976|gb|EEL58287.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2] Length = 106 Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 11/94 (11%) Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG----- 246 VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 7 VFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKD 66 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L + GI+ R E LSIE+F ++N L Sbjct: 67 KELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 100 >gi|330813693|ref|YP_004357932.1| peptidyl-tRNA hydrolase [Candidatus Pelagibacter sp. IMCC9063] gi|327486788|gb|AEA81193.1| peptidyl-tRNA hydrolase [Candidatus Pelagibacter sp. IMCC9063] Length = 185 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILK---KIAESSGSLDGITVIEIGAGPG 59 MNN ++ I +YKIIPK + LDL I K K+ SSG +GI IE GP Sbjct: 65 MNNSGTCIREIQDYYKIIPKNVFVFHDDLDLEIGKIRCKVGGSSGGHNGIKSIEDAIGP- 123 Query: 60 NLTQMLLTLG 69 N ++ + +G Sbjct: 124 NFYRIRVGIG 133 >gi|224004112|ref|XP_002295707.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209585739|gb|ACI64424.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 215 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF- 109 V++IG G G LT+ L LGA V+ ++ + + K SS +RLE DD+ Sbjct: 77 VLDIGCGGGLLTESLSRLGASLVVGVDASPKVVDVAKMHSSHEYSRLEHDVDDSTTNQHH 136 Query: 110 -EKFFNISSPIRIIANLP 126 + F+I + + +I ++P Sbjct: 137 DHELFDIVTALEVIEHVP 154 >gi|312100661|ref|XP_003149435.1| hypothetical protein LOAG_13883 [Loa loa] gi|307755400|gb|EFO14634.1| hypothetical protein LOAG_13883 [Loa loa] Length = 120 Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E S TV E+G+G GNLT +L+ A+KVI E D++ Sbjct: 54 GQHILKNPGVVNAIVEKSAIKATDTVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAE 112 Query: 86 LK 87 LK Sbjct: 113 LK 114 >gi|226304595|ref|YP_002764553.1| hypothetical protein RER_11060 [Rhodococcus erythropolis PR4] gi|226183710|dbj|BAH31814.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 270 Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLT 62 +S L + H + P + G + ++ + E + SLDG+TV+++G GPG Sbjct: 31 KRSFGLLSDFRHEQSAPDIFYGALARDSVELISDLHEGHTGRSLDGLTVLDVGGGPGYFA 90 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI---IQDDALKVDF 109 ++ GAR + P+ D S H L + ++ L + F Sbjct: 91 EVFQAAGAR----------YIPVEPDPSEMHAAGLTVGGAVRGSGLALPF 130 >gi|307091936|gb|ADN28303.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDAL 105 G V+++GAG G LT L GAR V+ +E D + L ++ +E++ D L Sbjct: 16 GELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVELVVGDIL 74 Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 ++ S P R+++N P+ + T LL + P+ L L Sbjct: 75 ELSLP-----SEPYRVVSNPPFGVTTALLRRLLEPPERGPYRADLLL 116 >gi|315453006|ref|YP_004073276.1| N-6 adenine methyltransferase [Helicobacter felis ATCC 49179] gi|315132058|emb|CBY82686.1| N-6 adenine methyltransferase [Helicobacter felis ATCC 49179] Length = 194 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 18/136 (13%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---- 88 LN+L+ I +S +E+ G G++ L+ GA++ + E+D++ F +L++ Sbjct: 41 LNVLRPIIATSA------FVEVFGGSGSVGLEALSCGAQEALFFEQDREVFTLLQENIRL 94 Query: 89 --ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL--PYNIGTRLLFNWISADTWP 144 + P + + IQ D+LK+ ++ + S +II L P+N+ + F + P Sbjct: 95 FQKRLKQPLKAQAIQGDSLKL-LPQYLHSLSAAQIILYLDPPFNMPLQACFVCLENVQIP 153 Query: 145 PFWESLTLLFQKEVGE 160 P S ++F+ + E Sbjct: 154 P---SSVIIFEHQSQE 166 >gi|227827664|ref|YP_002829444.1| dimethyladenosine transferase [Sulfolobus islandicus M.14.25] gi|229584868|ref|YP_002843370.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.27] gi|238619835|ref|YP_002914661.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.4] gi|227459460|gb|ACP38146.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus M.14.25] gi|228019918|gb|ACP55325.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus M.16.27] gi|238380905|gb|ACR41993.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus M.16.4] gi|323474722|gb|ADX85328.1| rRNA adenine methylase transferase [Sulfolobus islandicus REY15A] Length = 198 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 35/161 (21%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G GN+T+ L I IE D++ LKD + ++ DA + Sbjct: 8 ILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKDYN--------LVIADARYL--- 51 Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 PI +++++LPY I + + D L L+ QK+ ++I N Sbjct: 52 -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 P Y +S L + I P F P PKV S + F Sbjct: 98 DPTY--ISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVF 136 >gi|315426853|dbj|BAJ48474.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum subterraneum] Length = 248 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 12/109 (11%) Query: 23 KYMGQNFLLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + M Q+FL+D ++ +A GS D V+++GAG G L ARKV +E+D Sbjct: 5 RLMDQHFLVDRAVVMHLVVAAELGSED--VVLDVGAGTGVLAFEAAKF-ARKVYAVERDP 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + L + + ++ N +E ++ + L++ + +I+AN P+++ Sbjct: 62 ILYKTLSEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSL 103 >gi|229494375|ref|ZP_04388138.1| methyltransferase type 11 [Rhodococcus erythropolis SK121] gi|229318737|gb|EEN84595.1| methyltransferase type 11 [Rhodococcus erythropolis SK121] Length = 256 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLT 62 +S L + H + P + G + ++ + E + SLDG+TV+++G GPG Sbjct: 17 KRSFGLLSDFRHEQSAPDIFYGALARDSVELISDLHEGHTGRSLDGLTVLDVGGGPGYFA 76 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI---IQDDALKVDF 109 ++ GAR + P+ D S H L + ++ L + F Sbjct: 77 EVFQAAGAR----------YIPVEPDPSEMHAAGLTVGGAVRGSGLALPF 116 >gi|291190262|ref|NP_001167350.1| phosphoethanolamine N-methyltransferase 3 [Salmo salar] gi|223649374|gb|ACN11445.1| phosphoethanolamine N-methyltransferase 3 [Salmo salar] Length = 495 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 28/211 (13%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 SL G V+E+GAG G T LLTL A V ++ + F + +S + N +Q D Sbjct: 48 SLSGQRVLELGAGIGRYTSHLLTL-ASHVTAVDFMESFVEKNRQDNSHYSN-ASFLQADV 105 Query: 105 LKVDFEK-FFNI---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160 K+DF K F+I + + +++ T + W+S + F ES +Q + Sbjct: 106 TKLDFPKNSFDIIFSNWLLMYLSDEELTSLTERMLGWLSPGGYLFFRESCN--YQSGDFK 163 Query: 161 RI---TAQKNSPHYGRLSVLT-----GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 R T ++S HY L T K FDI + K T I + Sbjct: 164 RTFNPTHYRSSAHYSHLMTTTLREESEGAEKQVFGFDIVLN------KTVQTYIKMKKNQ 217 Query: 213 NPIPCCLESLKKIT--QEAFGKRRKTLRQSL 241 N + LE + + T QE F +T +Q L Sbjct: 218 NQVCWLLEKVGRDTACQEGF----RTFQQFL 244 >gi|170571310|ref|XP_001891678.1| hypothetical protein [Brugia malayi] gi|158603678|gb|EDP39514.1| conserved hypothetical protein [Brugia malayi] Length = 219 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 IL +AE G +DG TV ++G GPG L + LGA + IE D++ I ++ + + Sbjct: 36 ILNAVAEE-GCMDGCTVADLGCGPGILLLGAVKLGASYGLGIEIDEEAINICRN-NIERC 93 Query: 95 NRLEIIQDDALKVDFEKFFNISSPI--RIIANLPY----NIGTRLLF 135 + ++ D + +D K + PI +I N P+ N G L F Sbjct: 94 DLGNVV--DVICLDVTKNISALKPIFDTVIMNPPFGTKNNAGMDLRF 138 >gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ] gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ] Length = 189 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRL 97 +S+G LDG+ V+++ AG G+L L+ GA +V IEKD+ L+ ++ H +R Sbjct: 37 DSAGRLDGMRVLDLFAGSGSLGIEALSRGAEQVTFIEKDRHALESLR-LNLGHTGFSDRA 95 Query: 98 EIIQDDALKV 107 E++ D L+ Sbjct: 96 EVLPFDCLQA 105 >gi|39938792|ref|NP_950558.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] gi|39721901|dbj|BAD04391.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] Length = 455 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 5/65 (7%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + +G G ++E+GAG GN+T+ L+ GA+ VI +E D++ +L++ + P L + Sbjct: 291 QDTGLKTGEKILELGAGSGNVTKYLVQKFGAQNVITLEYDKELCNVLRN---KFPG-LTV 346 Query: 100 IQDDA 104 I+ DA Sbjct: 347 IEGDA 351 >gi|198431339|ref|XP_002123350.1| PREDICTED: similar to LOC495955 protein [Ciona intestinalis] Length = 338 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 35/172 (20%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQ----NFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 N ++ IL +IPK Y G LDL + E+ L G V+E+G G G Sbjct: 88 NLADKAIPNILDTSDLIPKVYEGGLKLWESCLDLVHFLEKQENKELLQGKHVMEVGCGFG 147 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPI----------------LKDISSQHPNRLEIIQDD 103 + + GA+KV+ +D F I + D ++ P RL+ D+ Sbjct: 148 LPGILAVKCGAKKVVF--QDYNHFVIFNATGPSVFLNECKTKVSDDATPEPKRLKTEDDN 205 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 + FEKF L +I T +++IS D W +++ + F+ Sbjct: 206 DVMDSFEKF------------LETDIKTECQYSFISGD-WGEVAQNVDIKFE 244 >gi|114452124|gb|ABI75036.1| erythromycin resistance protein [uncultured bacterium] Length = 123 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 +IEIG+G G+ T L V IE D + I K+ ++ N ++I D L+ F Sbjct: 17 IIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRITKNKLIEYEN-FQVINKDILQFKFP 74 Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134 K + +I N+PYNI T ++ Sbjct: 75 K----NKSYKIFGNIPYNISTDII 94 >gi|307091898|gb|ADN28284.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ + E DG ++E+GAG G LT L LG R + IE D + L +S Sbjct: 2 DRGVVDTLVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRTS 59 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + DF ++ +P I+ NLPY++ T +L + W Sbjct: 60 A--------SSRVVDADFLQYRLPHAPHVIVGNLPYHLTTAMLRRLLHGPGW 103 >gi|268553797|ref|XP_002634885.1| Hypothetical protein CBG10553 [Caenorhabditis briggsae] Length = 251 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 5/111 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y +K++G++ L+ I K I L+G V+++G G G+ + L GA +V+ I Sbjct: 9 YTEAQQKWLGRDHLITPTIKKAIGNV---LEGKKVLDVGCGNGHYSFDFLQWGADEVVGI 65 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANL 125 + + I +D + P +I ++ DF +K F++++ ++ L Sbjct: 66 DNSPEMIQICQDSQKKLPESSKIDFHESNITDFSLQKHFDVATAFFVLQFL 116 >gi|315425087|dbj|BAJ46759.1| dimethyladenosine transferase [Candidatus Caldiarchaeum subterraneum] gi|315428047|dbj|BAJ49635.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum subterraneum] Length = 242 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 12/107 (11%) Query: 25 MGQNFLLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 M Q+FL+D ++ +A GS D V+++GAG G L ARKV +E+D Sbjct: 1 MDQHFLVDRAVVMHLVVAAELGSED--VVLDVGAGTGVLAFEAAKF-ARKVYAVERDPIL 57 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + L + + ++ N +E ++ + L++ + +I+AN P+++ Sbjct: 58 YKTLSEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSL 97 >gi|307091912|gb|ADN28291.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ + E DG ++E+GAG G LT L LG R + IE D + L +S Sbjct: 2 DRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLGKRTS 59 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + DF ++ +P I+ NLP+++ T +L + W Sbjct: 60 ASTR--------VVDADFLQYRLPRAPHVIVGNLPFHLTTAMLRRILHGPAW 103 >gi|325299742|ref|YP_004259659.1| hypothetical protein Bacsa_2652 [Bacteroides salanitronis DSM 18170] gi|324319295|gb|ADY37186.1| Conserved hypothetical protein CHP00095 [Bacteroides salanitronis DSM 18170] Length = 177 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 DGIT +++ AG G+++ L++ G KV+ +EKD Q + + Sbjct: 44 DGITALDLFAGTGSISLELISRGCEKVVSVEKDPQHYAFI 83 >gi|319784639|ref|YP_004144115.1| methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170527|gb|ADV14065.1| Methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 294 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 V+EIGAGPG++ + L+ L +V +E D PILK Sbjct: 37 VLEIGAGPGSIAKPLIALNGCRVTALEYDPNCIPILK 73 >gi|307092032|gb|ADN28351.1| putative rRNA methyltransferase [uncultured bacterium] Length = 130 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D N L KI ++ V+EIG G G LT++LL A +V IE D++ L + Sbjct: 2 DQNQLHKIVAAAEIGPDDKVLEIGPGLGPLTELLLE-KAGEVFAIETDERLVDFLCERFG 60 Query: 92 QHPNR-----------LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 N L ++ DDAL ++ S +++ANLPY++ + +L Sbjct: 61 LRANESAGAKETPAHNLCLLHDDALAF-IKRERRDWSDWKLVANLPYSVASPIL 113 >gi|307091954|gb|ADN28312.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091968|gb|ADN28319.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091970|gb|ADN28320.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDAL 105 G V+++GAG G LT L GAR V+ +E D + L ++ +E++ D L Sbjct: 16 GELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVELVVRDIL 74 Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 ++ S P R+++N P+ + T L+ + P+ L L Sbjct: 75 ELSLP-----SEPYRVVSNPPFGVTTALMRRLLEPSERGPYRADLLL 116 >gi|307091986|gb|ADN28328.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 D ++E+GAG G +T L G R V +E D L+ +HP R ++ D L Sbjct: 16 DSAPILELGAGDGAVTWALFQAG-RAVTAVELDSNRVAALR---RRHP-RAIVVAGDMLD 70 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + E + +++N+P+ I T LL + + W Sbjct: 71 IRLESDHH------VVSNVPFGITTPLLRHLLPQQHW 101 >gi|41615127|ref|NP_963625.1| hypothetical protein NEQ337 [Nanoarchaeum equitans Kin4-M] gi|40068851|gb|AAR39186.1| NEQ337 [Nanoarchaeum equitans Kin4-M] Length = 193 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 50 TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88 T++EIG G G+LT L L K+IV EKD ++ PILK+ Sbjct: 42 TIVEIGPGSGSLTMYLAYLVYPNKIIVYEKDDRWIPILKE 81 >gi|298249778|ref|ZP_06973582.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] gi|297547782|gb|EFH81649.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 7/100 (7%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARK----VIVIEKDQQFFPILKD-IS 90 + I E +G G+ V+EIG GPG T +L + A K V +E + +L+ + Sbjct: 62 EHIVERAGVALGMRVLEIGPGPGLFTTVLARRVAAGKSSGSVTCVEVQSKMIELLRQRLE 121 Query: 91 SQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNI 129 + +EIIQ D + E F++ + ++ LPY + Sbjct: 122 REEVGNVEIIQADGCHMPLPEGSFDMIFLVTVVGELPYPV 161 >gi|312068607|ref|XP_003137293.1| hypothetical protein LOAG_01707 [Loa loa] gi|307767542|gb|EFO26776.1| hypothetical protein LOAG_01707 [Loa loa] Length = 219 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 IL IAE G +DG TV ++G GPG L + LGA + +E D++ I ++ Sbjct: 36 ILNAIAEE-GYIDGCTVADLGCGPGILLLGAVKLGASYGLGVEIDEEVIKICQN 88 >gi|325688980|gb|EGD30988.1| methyltransferase domain protein [Streptococcus sanguinis SK115] Length = 228 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 13/117 (11%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQ-NFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M M N + + S Y + G+ ++LLD + +S ++ ++IG G G Sbjct: 1 MFMENITEQFNAVASEYDWVTTLLEGKPDYLLD-----NLPDSR-----VSALDIGCGGG 50 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNI 115 N T + L+ + V I+ F I KD + + +E++QDD L FEK F+ Sbjct: 51 N-TCIFLSSYFQHVTGIDLSADFLQIAKDKVEKEDLQNVELLQDDFLTAVFEKQFDF 106 >gi|293333490|ref|NP_001168088.1| hypothetical protein LOC100381822 [Zea mays] gi|223945939|gb|ACN27053.1| unknown [Zea mays] Length = 170 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%) Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNS 168 EK+ ++ +NLP+N+ T ++ + + + L+ Q E R+ A S Sbjct: 3 EKYGATKKLAKVASNLPFNVSTEVVKLLLPMGD---VFSVVVLMLQDETAVRLADASIQS 59 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 P Y ++V + ++ F + FFP PKV VI F Sbjct: 60 PEYRSINVFVDFYSEPEYKFRVDRENFFPRPKVDGAVISF 99 >gi|307091994|gb|ADN28332.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 D ++E+GAG G +T LL R V +E D L+ +HP R ++ D L Sbjct: 16 DSAPILELGAGDGAVTWALLQ-ADRAVTAVELDSNRVAALR---RRHP-RAMVVAGDMLD 70 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + E + +++N+P+ I T LL + + W Sbjct: 71 IRLESNHH------VVSNVPFGITTPLLRHLLPQQHW 101 >gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] Length = 328 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 G G T+ LL GA KVI I++D FP+ D + P+R+++ Sbjct: 32 GAGGYTRDLLAAGADKVIGIDRDPSVFPLSADWRAAMPDRVDL 74 >gi|77458233|ref|YP_347738.1| hypothetical protein Pfl01_2006 [Pseudomonas fluorescens Pf0-1] gi|77382236|gb|ABA73749.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 268 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 + L+ + E G +DG V+++ G + L +LGAR V+ I++ F ++++ + Sbjct: 47 DTLRGLLEQVG-VDGKDVVQLCCNNGRESLSLFSLGARSVVGIDQSSAFLEQARELNKRS 105 Query: 94 PNRLEIIQDD 103 P+ E I+ D Sbjct: 106 PHNAEFIEAD 115 >gi|251781572|ref|YP_002995873.1| adenine-specific methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390200|dbj|BAH80659.1| adenine-specific methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126365|gb|ADX23662.1| adenine-specific methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 317 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL ++K+ + IE D + I+ Sbjct: 97 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEV 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K ++ +I++LP Sbjct: 157 MDSSARFIQEDAVRPQLLKESDV-----VISDLP 185 >gi|255652853|ref|NP_001157460.1| protein arginine N-methyltransferase 6 [Danio rerio] Length = 355 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95 I ++S S++G V+++GAG G L+ GARKV +E Q I+K +Q + Sbjct: 53 IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 110 Query: 96 RLEIIQ 101 R+E+I+ Sbjct: 111 RIEVIK 116 >gi|224025726|ref|ZP_03644092.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM 18228] gi|224018962|gb|EEF76960.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM 18228] Length = 188 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 30/46 (65%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 DG+T +++ AG G+++ L++ G +VI +EKD Q + ++ + + Sbjct: 44 DGVTALDLFAGTGSISIELVSRGCDRVISVEKDPQHYAFIRKVMEE 89 >gi|45709074|gb|AAH67600.1| Prmt6 protein [Danio rerio] Length = 354 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95 I ++S S++G V+++GAG G L+ GARKV +E Q I+K +Q + Sbjct: 52 IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 109 Query: 96 RLEIIQ 101 R+E+I+ Sbjct: 110 RIEVIK 115 >gi|309361314|emb|CAP29948.2| CBR-PRMT-6 protein [Caenorhabditis briggsae AF16] Length = 228 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y +K++G++ L+ I K I L+G V+++G G G+ + L GA +V+ I Sbjct: 9 YTEAQQKWLGRDHLITPTIKKAIGNV---LEGKKVLDVGCGNGHYSFDFLQWGADEVVGI 65 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRII 122 + + I +D + P +I ++ DF +K F++++ ++ Sbjct: 66 DNSPEMIQICQDSQKKLPESSKIDFHESNITDFSLQKHFDVATAFFVL 113 >gi|301300206|ref|ZP_07206418.1| dimethyladenosine transferase domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852147|gb|EFK79819.1| dimethyladenosine transferase domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 136 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 D + VIEIG G LT+ LT A +V+ E D + PIL D N + ++ +D LK Sbjct: 8 DQVNVIEIGPDIGALTE-FLTERAAEVMAFEIDYRLVPILADTLRDFDNVI-VVNEDILK 65 Query: 107 VDFEKFFNIS 116 VD ++ Sbjct: 66 VDLAAEMGVT 75 >gi|86604368|gb|ABD13962.1| erythromycin resistance protein [Shuttle vector pBK638] gi|112941720|gb|ABI26288.1| ermAM [Promoter reporter vector pBKGT] gi|112941749|gb|ABI26293.1| ErmAM [Promoter rescue vector pBK] Length = 207 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64 Query: 86 LKDISSQH---PNRLEIIQDDALKVDF 109 ++SS+ R+ +I D L+ F Sbjct: 65 --NLSSEKLKLNTRVTLIHQDILQFQF 89 >gi|34849512|gb|AAH58308.1| Prmt6 protein [Danio rerio] Length = 347 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95 I ++S S++G V+++GAG G L+ GARKV +E Q I+K +Q + Sbjct: 45 IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 102 Query: 96 RLEIIQ 101 R+E+I+ Sbjct: 103 RIEVIK 108 >gi|239977077|sp|Q6NWG4|ANM6_DANRE RecName: Full=Protein arginine N-methyltransferase 6; AltName: Full=Histone-arginine N-methyltransferase PRMT6 Length = 349 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95 I ++S S++G V+++GAG G L+ GARKV +E Q I+K +Q + Sbjct: 47 IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 104 Query: 96 RLEIIQ 101 R+E+I+ Sbjct: 105 RIEVIK 110 >gi|195330205|ref|XP_002031795.1| GM23852 [Drosophila sechellia] gi|194120738|gb|EDW42781.1| GM23852 [Drosophila sechellia] Length = 454 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D Sbjct: 72 TVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGD 127 >gi|27436726|gb|AAN86836.1| adenine rRNA methylase [Mycobacterium smegmatis str. MC2 155] Length = 100 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + +GQNFL D ++ I E +G +IEIGAG G LT L L AR + +E D Sbjct: 8 RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTAVEVD 63 >gi|194902568|ref|XP_001980721.1| GG17302 [Drosophila erecta] gi|190652424|gb|EDV49679.1| GG17302 [Drosophila erecta] Length = 454 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D Sbjct: 72 TVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPRIQELHALYPERVKVRQGD 127 >gi|21356125|ref|NP_649971.1| mitochondrial transcription factor B2 [Drosophila melanogaster] gi|74869054|sp|Q9VH38|TFB2M_DROME RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; AltName: Full=d-mtTFB2; Flags: Precursor gi|16767892|gb|AAL28164.1| GH04071p [Drosophila melanogaster] gi|23170866|gb|AAF54482.2| mitochondrial transcription factor B2 [Drosophila melanogaster] gi|46394833|gb|AAS91579.1| mitochondrial transcription factor B2 [Drosophila melanogaster] gi|220946652|gb|ACL85869.1| mtTFB2-PA [synthetic construct] gi|220956302|gb|ACL90694.1| mtTFB2-PA [synthetic construct] Length = 452 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D Sbjct: 70 TVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGD 125 >gi|149179371|ref|ZP_01857929.1| hypothetical protein PM8797T_10439 [Planctomyces maris DSM 8797] gi|148841807|gb|EDL56212.1| hypothetical protein PM8797T_10439 [Planctomyces maris DSM 8797] Length = 245 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 40/76 (52%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 E +G G++V+++ G G T+ML GA V+ I+ Q + + +Q+ +E I Sbjct: 31 ELAGDPQGLSVLDVACGEGFYTRMLRERGATHVMGIDLSQGMIELAQRQEAQNQQGIEFI 90 Query: 101 QDDALKVDFEKFFNIS 116 DA ++ + F+++ Sbjct: 91 VGDARELPVSEQFDLA 106 >gi|323477450|gb|ADX82688.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus HVE10/4] Length = 198 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 35/161 (21%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G GN+T+ L I IE D++ LK+ + ++ DA + Sbjct: 8 ILEIGCGKGNITKFL-----EPDICIELDEKMIDYLKNYN--------LVIADARYL--- 51 Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 PI +++++LPY I + + D L L+ QK+ ++I N Sbjct: 52 -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 P Y +S L + I P F P PKV S + F Sbjct: 98 DPTY--ISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVF 136 >gi|118088134|ref|XP_419535.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 392 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 +GS V+E GPG LT+ LL G R V+ +E F L+ + + +L++I Sbjct: 85 AGSGPQPVVLECAPGPGVLTRTLLNAGVR-VVALESHPAFLSKLQSLENSLDGQLKVIYG 143 Query: 103 DALKVD 108 D ++D Sbjct: 144 DFFRLD 149 >gi|257865929|ref|ZP_05645582.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30] gi|257872262|ref|ZP_05651915.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10] gi|257799863|gb|EEV28915.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30] gi|257806426|gb|EEV35248.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10] Length = 214 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 +L +IAE +G +V+E G+G GNLTQ LL G + V+ IE P ++ I+ Sbjct: 36 QLLAEIAEKAGQ----SVVEFGSGTGNLTQALLDQG-KNVLAIEPS----PEMRRIAKSK 86 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 P+ ++ D D E F I+ I I + Sbjct: 87 PSLSKVTFVDG---DMEVFPEITDVIDTIVS 114 >gi|257875556|ref|ZP_05655209.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20] gi|257809722|gb|EEV38542.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20] Length = 214 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 +L +IAE +G +V+E G+G GNLTQ LL G + V+ IE P ++ I+ Sbjct: 36 QLLAEIAEKAGQ----SVVEFGSGTGNLTQALLDQG-KNVLAIEPS----PEMRRIAKSK 86 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 P+ ++ D D E F I+ I I + Sbjct: 87 PSLSKVTFVDG---DMEVFPEITDVIDTIVS 114 >gi|167032125|ref|YP_001667356.1| peptidase M22 glycoprotease [Pseudomonas putida GB-1] gi|166858613|gb|ABY97020.1| peptidase M22 glycoprotease [Pseudomonas putida GB-1] Length = 224 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 + SHY++IP+ M LL + I + +AES +L+ + I G GPG T + + +G + Sbjct: 24 VTSHYEVIPR--MHAQKLLPM-IKQLLAESGVALNALDAIAFGRGPGAFTGVRIAIGVVQ 80 Query: 73 VIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVD 108 + ++ P+ + +Q R + +Q A +D Sbjct: 81 GLAFALERPVLPVSNLAALAQGALREQGVQQVAAAID 117 >gi|323453370|gb|EGB09242.1| hypothetical protein AURANDRAFT_10333 [Aureococcus anophagefferens] Length = 542 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 Y G R+L+NW ++TW P W T +++ +G R+ A N P++ +S L Sbjct: 186 YTEGQRVLWNWELSETWYPDWRRQTRRWREALGARVLAYAN-PYFTNVSHL 235 >gi|227830361|ref|YP_002832141.1| dimethyladenosine transferase [Sulfolobus islandicus L.S.2.15] gi|284997867|ref|YP_003419634.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus L.D.8.5] gi|227456809|gb|ACP35496.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus L.S.2.15] gi|284445762|gb|ADB87264.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus L.D.8.5] Length = 198 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 35/161 (21%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G GN+T+ L I IE D++ LK+ + ++ DA + Sbjct: 8 ILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKNYN--------LVIADARYL--- 51 Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 PI +++++LPY I + + D L L+ QK+ ++I N Sbjct: 52 -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 P Y +S L + + I P F P PKV S + F Sbjct: 98 DPTY--ISFLLNYVFDIQIKDIIPPRCFSPRPKVYSIITVF 136 >gi|307091884|gb|ADN28277.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 61/108 (56%), Gaps = 13/108 (12%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + ++ + S DG T +EIGAG G LT L +LG R+++ ++ D + L+ + P+ Sbjct: 6 IDRMVDLVRSTDGPT-LEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLR---RRLPS 60 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +++ + DAL++ ++ P+ ++ N+P++I T +L ++ W Sbjct: 61 -VDVRRADALQIRLDR------PV-VVGNIPFHITTPVLRRLLATGEW 100 >gi|304396992|ref|ZP_07378872.1| ribosomal protein L11 methyltransferase [Pantoea sp. aB] gi|304355788|gb|EFM20155.1| ribosomal protein L11 methyltransferase [Pantoea sp. aB] Length = 293 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100 LDG TVI+ G G G L L LGA + I I+ D Q +D + ++ +RL + Sbjct: 156 DLDGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRDNAERNGVSDRLSLYLP 215 Query: 101 --QDDALKVDFEKFFNISSPIRIIANL 125 Q D L+ D ++ P+R +A L Sbjct: 216 HQQPDNLQADVVVANILAGPLRELAPL 242 >gi|195499664|ref|XP_002097046.1| GE26003 [Drosophila yakuba] gi|194183147|gb|EDW96758.1| GE26003 [Drosophila yakuba] Length = 454 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D Sbjct: 72 TVMELNSGAGYFTRHLLDRESQFRRIILLETMDHFMPKIQELHALYPERVKVRQGD 127 >gi|257054996|ref|YP_003132828.1| putative methyltransferase [Saccharomonospora viridis DSM 43017] gi|256584868|gb|ACU96001.1| putative methyltransferase [Saccharomonospora viridis DSM 43017] Length = 189 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 30/47 (63%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 E++G LDG+ V+++ +G G L L+ GAR+ + +E D+ +L+ Sbjct: 37 EAAGELDGVRVLDLYSGSGALGLEALSRGAREAMFVEADRTAVEVLR 83 >gi|77457298|ref|YP_346803.1| peptidase M22, glycoprotease [Pseudomonas fluorescens Pf0-1] gi|77381301|gb|ABA72814.1| putative glycoprotease-family protein [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 + SHY++IP+ + + LL + I + +A++ +L + I G GPG T + + +G + Sbjct: 24 VTSHYEVIPRLHAQK--LLPM-IQQLLADAGTTLQAVDAIAFGRGPGAFTGVRIAIGVVQ 80 Query: 73 VIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRI--- 121 + D+ P+ + +Q R + A +D + + + +R+ Sbjct: 81 GLAFALDRPVLPVSNLAVLAQRAYREHGVSQVAAAIDARMDEVYWGCYRETAGEMRLVGA 140 Query: 122 -------IANLP-------------YNIGTRLLFNWISADTWP-PFWESLTLL--FQKEV 158 +A LP + G R+ N +D P E L L F E Sbjct: 141 EAVLPPEVAALPDDASGDWFGAGTGWGYGERIAVNLSGSDAGMLPHAEDLLTLARFAWER 200 Query: 159 GERITAQKNSPHYGRLSVLT 178 GE I A P Y R V T Sbjct: 201 GEAIPADDAQPVYLRDKVAT 220 >gi|258545948|ref|ZP_05706182.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] gi|258518826|gb|EEV87685.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] Length = 248 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQ 81 K++GQ+FL D ++ ++ + G ++EIG G G LT +L GA + +E D + Sbjct: 8 KHLGQHFLRDEAVIARLLAVINAKAGERILEIGPGLGALTLPLLRQTGA--MTAVEYDPR 65 Query: 82 FF-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 P+ K ++ L +I D L +DF + P Sbjct: 66 VLAPLAKKAATL--GTLHLIHADILTIDFGELLAKQPP 101 >gi|224370439|ref|YP_002604603.1| putative SAM-dependent methyltransferase [Desulfobacterium autotrophicum HRM2] gi|223693156|gb|ACN16439.1| putative SAM-dependent methyltransferase [Desulfobacterium autotrophicum HRM2] Length = 288 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 41 ESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---HPNR 96 E +G+L G +++IG+GPGN ++ +GA +V+ +E ILK+ + H ++ Sbjct: 64 EDAGALQAGNRILDIGSGPGNWAIPMVEMGA-EVVAVEPSGGMVKILKEKMAAKGIHSDQ 122 Query: 97 LEIIQDDALKVDFEK 111 L I Q VD EK Sbjct: 123 LRIDQRAWQDVDVEK 137 >gi|218264183|ref|ZP_03478067.1| hypothetical protein PRABACTJOHN_03757 [Parabacteroides johnsonii DSM 18315] gi|218222229|gb|EEC94879.1| hypothetical protein PRABACTJOHN_03757 [Parabacteroides johnsonii DSM 18315] Length = 205 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++E+G+G G++T +L L +I EKD+Q I + NR I+ ++ F Sbjct: 47 ILEVGSGLGDITAILCYLDFTNIIAFEKDEQICHIAQRRLKDMFNRENIVYNEK----FP 102 Query: 111 KFFNISSPIRIIANLPY 127 N SS + ++ N Y Sbjct: 103 NRQNYSSDVLVLVNCAY 119 >gi|149910033|ref|ZP_01898681.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36] gi|149806901|gb|EDM66862.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36] Length = 293 Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD------ISSQHPNRLE 98 L G TV++ G G G L L LGA++VI ++ D Q +D ++ Q L Sbjct: 156 DLTGKTVVDFGCGSGILAIAALKLGAKRVIGVDIDPQAILASRDNAERNGVADQIELYLP 215 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANL 125 Q D +K D +++P+R ++ L Sbjct: 216 ADQPDGIKADIVVANILAAPLRELSGL 242 >gi|313681823|ref|YP_004059561.1| methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154683|gb|ADR33361.1| methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 195 Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDAL 105 ++E+ +G G++ L+ GA+K+I +EKD+ L++ I+ P+ E+I+ D+ Sbjct: 53 LVEVFSGSGSIGLEALSRGAKKIIFMEKDRDAIRTLRENIAQTDPSACEVIEGDSF 108 >gi|307091930|gb|ADN28300.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ + E DG ++E+GAG G LT L LG R + IE D + L +S Sbjct: 2 DRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRTS 59 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + DF ++ +P I+ NLP+++ T +L + W Sbjct: 60 ASTR--------VVDADFLQYRLPRAPHVIVGNLPFHLTTAMLRRILHGPAW 103 >gi|238794626|ref|ZP_04638232.1| Ribosomal protein L11 methyltransferase [Yersinia intermedia ATCC 29909] gi|238726015|gb|EEQ17563.1| Ribosomal protein L11 methyltransferase [Yersinia intermedia ATCC 29909] Length = 293 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100 SLDG TVI+ G G G L L LGA + I I+ D Q +D + ++ RLE+ Sbjct: 156 SLDGKTVIDFGCGSGILAIAALKLGATRAIGIDIDPQAIQASRDNAQRNGVSERLELYLA 215 Query: 101 --QDDALKVDFEKFFNISSPIRIIANL 125 Q L D ++ P+R +A L Sbjct: 216 KDQPADLSADVVVANILAGPLRELAPL 242 >gi|152002559|dbj|BAF73583.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-W] Length = 455 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + +G G ++E+GAG GN+T+ L+ G + VI +E D++ +L++ + P L + Sbjct: 291 QDTGLKTGEKILELGAGSGNVTKYLVQKFGTQNVIALEYDKELCNVLRN---KFPG-LTV 346 Query: 100 IQDDA 104 I+ DA Sbjct: 347 IEGDA 351 >gi|307595611|ref|YP_003901928.1| methyltransferase [Vulcanisaeta distributa DSM 14429] gi|307550812|gb|ADN50877.1| methyltransferase small [Vulcanisaeta distributa DSM 14429] Length = 214 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 9/107 (8%) Query: 27 QNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + ++ D NI+ A L V+++G G G +GAR+VI ++ D + Sbjct: 33 EQYITDANIVAVAIWDAYMRNYLTNARVLDLGCGTGRFAIAAALMGARQVICVDIDPEAL 92 Query: 84 PILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 I K+ +S++ N ++ + +D + FN+ I N P+ I Sbjct: 93 TIAKESASEYGLNNVDFVTNDVRNMAITGKFNV-----IFQNPPFGI 134 >gi|322410938|gb|EFY01846.1| adenine-specific methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 317 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL +K+ + IE D + I+ Sbjct: 97 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTIKKLDYVGIELDDLLIDLSASIAEV 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K ++ +I++LP Sbjct: 157 MDSSARFIQEDAVRPQLLKESDV-----VISDLP 185 >gi|114452116|gb|ABI75032.1| erythromycin resistance protein [uncultured bacterium] Length = 121 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 12/88 (13%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106 TV EIG G G+LT L + +++V IE D F ++SS+ R+ +I D L+ Sbjct: 2 TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 56 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLL 134 F +I+ ++PY++ T+++ Sbjct: 57 FQFPN----KQRYKIVGSIPYHLSTQII 80 >gi|198450471|ref|XP_001357992.2| GA17767 [Drosophila pseudoobscura pseudoobscura] gi|198131051|gb|EAL27128.2| GA17767 [Drosophila pseudoobscura pseudoobscura] Length = 452 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ G G+ T+ LL RK+I++E + F P L ++ + +P R+++ D Sbjct: 74 TVLELNPGAGHFTRHLLDRETQFRKIILLESMEYFMPRLHELHTLYPERVKVRHGD 129 >gi|12081903|dbj|BAB20748.1| ErmGM [Staphylococcus aureus] gi|57207872|dbj|BAD86539.1| ermGM [Staphylococcus aureus] Length = 244 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 15/182 (8%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 QNF+ + KI + V EIG+G G+ T + L V VIE D Sbjct: 8 FSQNFITSKRHINKIMSNLELNRNDNVFEIGSGKGHFT-LELVQKCNYVTVIEIDSNLCI 66 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 ++ + + N II D L+ F + +I N+PY I T ++ + Sbjct: 67 QTQNKVTNYDN-FRIINKDILQFKFPN----NKAYKIYGNIPYYISTDIVRKIVFESEAT 121 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + L+ ++ +R+ S L++L +++ I F P PK+ S+ Sbjct: 122 VSY----LIVEEGFAKRLLNTNRS-----LALLLMTEVDISILSKIPKEYFHPKPKINSS 172 Query: 205 VI 206 +I Sbjct: 173 LI 174 >gi|229579179|ref|YP_002837577.1| dimethyladenosine transferase [Sulfolobus islandicus Y.G.57.14] gi|229582069|ref|YP_002840468.1| dimethyladenosine transferase [Sulfolobus islandicus Y.N.15.51] gi|228009893|gb|ACP45655.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus Y.G.57.14] gi|228012785|gb|ACP48546.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus Y.N.15.51] Length = 198 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 35/161 (21%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G GN+T+ L I IE D++ LK+ + ++ DA + Sbjct: 8 ILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKNYN--------LVIADARYL--- 51 Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 PI +++++LPY I + + D L L+ QK+ ++I N Sbjct: 52 -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 P Y +S L + I P F P PKV S + F Sbjct: 98 DPTY--ISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVF 136 >gi|85057695|ref|YP_456611.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789800|gb|ABC65532.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 450 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 39 IAESSGSLD---GITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHP 94 + E LD G ++E+GAG GN+T+ L+ G + VI +E D++ +L++ + P Sbjct: 279 VFEEKQDLDSKTGEKILELGAGSGNVTKYLVQKFGVKNVIALEFDKELCNVLRN---KFP 335 Query: 95 NRLEIIQDDA 104 + L +I+ DA Sbjct: 336 D-LTVIEGDA 344 >gi|256394693|ref|YP_003116257.1| methyltransferase type 12 [Catenulispora acidiphila DSM 44928] gi|256360919|gb|ACU74416.1| Methyltransferase type 12 [Catenulispora acidiphila DSM 44928] Length = 257 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 N + DL +AE G G+ V+EIGAG G T LL GA V V + + Sbjct: 19 NIVFDL-----LAERCGLKPGVRVLEIGAGSGLATGPLLAAGAHVVAVEPGESLAALLAA 73 Query: 88 DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 D + +RL I D D F+++ + L T+ + + D W W Sbjct: 74 DHAC---DRLHITVSDFETADLSPGFDLAVAASALHWLDPATSTQRIATLVRPDGWLAAW 130 >gi|304391527|ref|ZP_07373469.1| putative methylase [Ahrensia sp. R2A130] gi|303295756|gb|EFL90114.1| putative methylase [Ahrensia sp. R2A130] Length = 227 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN-RLEIIQD 102 G++ G+ V++IGAG G LT L LGAR V + +K ++HP+ R Sbjct: 18 GNIAGLDVLDIGAGSGRLTHRLSNLGARAVGAEPNPEA----VKAAQAKHPDIRFVTAPT 73 Query: 103 DALKVDFEKF 112 +AL D F Sbjct: 74 EALPFDAATF 83 >gi|119597557|gb|EAW77151.1| transcription factor B2, mitochondrial, isoform CRA_c [Homo sapiens] Length = 295 Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 ++E GPG LTQ LL GA KV+ +E D+ F P L+ + + N Sbjct: 99 LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLEKLMADPGN 142 >gi|153870300|ref|ZP_01999730.1| hypothetical protein BGP_0907 [Beggiatoa sp. PS] gi|152073233|gb|EDN70269.1| hypothetical protein BGP_0907 [Beggiatoa sp. PS] Length = 86 Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 G ++E+GAG G+ +Q+LL + IE Q FP+L + P+ Sbjct: 37 GSHLLEVGAGTGDFSQLLLQTQPTSLTTIEPSQNMFPLLDEKLKNEPH 84 >gi|307091886|gb|ADN28278.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091904|gb|ADN28287.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 27/115 (23%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + ++ + S DG ++EIGAG G LT L +LG R+++ + DI +H + Sbjct: 6 IDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAV-----------DIDGRHVD 52 Query: 96 RLE-------IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 RL + + DAL++ ++ P+ ++ N+P++I T +L ++ W Sbjct: 53 RLRRRLPSVVVRRADALQIRLDR------PV-VVGNIPFHITTPILRRLLATGEW 100 >gi|302348992|ref|YP_003816630.1| Predicted RNA methylase [Acidilobus saccharovorans 345-15] gi|302329404|gb|ADL19599.1| Predicted RNA methylase [Acidilobus saccharovorans 345-15] Length = 200 Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 G +DG TV ++G+G + L LGAR+ I ++ D +F I K Sbjct: 37 GLIDGATVADLGSGTCRIAIASLLLGARRAIAVDYDYRFGSICK 80 >gi|94993496|ref|YP_601594.1| Adenine-specific methyltransferase [Streptococcus pyogenes MGAS10750] gi|94547004|gb|ABF37050.1| Adenine-specific methyltransferase [Streptococcus pyogenes MGAS10750] Length = 332 Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200 >gi|312886401|ref|ZP_07746010.1| methyltransferase [Mucilaginibacter paludis DSM 18603] gi|311301029|gb|EFQ78089.1| methyltransferase [Mucilaginibacter paludis DSM 18603] Length = 180 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 +G+ V+++ +G GN++ + GAR+V+ +++ +KD + QH ++E I Sbjct: 42 FEGLNVLDLFSGTGNISLEFASRGARQVVAVDRSVHCINYVKDTARQH--KVEDIV--TY 97 Query: 106 KVDFEKFFNISSPIR--IIANLPYNI 129 K D K+ + + I A+ PY++ Sbjct: 98 KADVFKYLEMETEQYDLIFADPPYDL 123 >gi|307091894|gb|ADN28282.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 27/115 (23%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + ++ + S DG ++EIGAG G LT L +LG R+++ + DI +H + Sbjct: 6 IDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAV-----------DIDGRHVD 52 Query: 96 RLE-------IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 RL + + DAL++ ++ P+ ++ N+P++I T +L ++ W Sbjct: 53 RLRRRLPSVVVRRADALQIRLDR------PV-VVGNIPFHITTPILRRLLTTGEW 100 >gi|306828212|ref|ZP_07461473.1| adenine-specific methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304429590|gb|EFM32638.1| adenine-specific methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 332 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200 >gi|156972541|ref|YP_001443448.1| ribosomal protein L11 methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|166223500|sp|A7MXI3|PRMA_VIBHB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|156524135|gb|ABU69221.1| hypothetical protein VIBHAR_00173 [Vibrio harveyi ATCC BAA-1116] Length = 295 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100 L G TVI+ G G G L + LGA KVI I+ D Q +D + ++ N+LE+ Sbjct: 157 DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVANQLEVFLP 216 Query: 101 --QDDALKVDFEKFFNISSPIRIIA 123 Q + L D ++ P+R +A Sbjct: 217 QNQPEGLIADVVVANILAGPLRELA 241 >gi|71902757|ref|YP_279560.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS6180] gi|94989604|ref|YP_597704.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS10270] gi|71801852|gb|AAX71205.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS6180] gi|94543112|gb|ABF33160.1| Adenine-specific methyltransferase [Streptococcus pyogenes MGAS10270] Length = 332 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200 >gi|94987725|ref|YP_595826.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS9429] gi|94991593|ref|YP_599692.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS2096] gi|94541233|gb|ABF31282.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS9429] gi|94545101|gb|ABF35148.1| Adenine-specific methyltransferase [Streptococcus pyogenes MGAS2096] Length = 332 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200 >gi|307092050|gb|ADN28360.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 VIEIG G G L++ + G + +IE + +L+D + + +I D L + Sbjct: 21 VIEIGPGLGILSEAIFRHGVHSLTMIELVMRLATVLQD-RMRDRRGVNVINADFLDL--- 76 Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134 + P++++ANLP+N+ + +L Sbjct: 77 RGLPGDGPLKVVANLPFNVASAIL 100 >gi|302793634|ref|XP_002978582.1| hypothetical protein SELMODRAFT_233156 [Selaginella moellendorffii] gi|300153931|gb|EFJ20568.1| hypothetical protein SELMODRAFT_233156 [Selaginella moellendorffii] Length = 215 Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 36/164 (21%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF-------PIL 86 KK S LDG+T++++G G G L + L +GA + +E++ + P+ Sbjct: 17 FKKDPISPRPLDGLTILDVGCGGGLLCEPLARMGAHVTGIDAVEENIEVAKLHAAKDPLT 76 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 I QH +++Q+ ++ F+I + + +I ++P + F Sbjct: 77 ATILYQHTTAEQLVQE-------KQQFDIVAALEVIEHVPDPMD---------------F 114 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLT-----GWRTKAT 185 +SL+LL +++ I+ SP L++ GW K T Sbjct: 115 LQSLSLLTKQDGAVVISTLNRSPTSYSLAIFAAEYILGWLPKGT 158 >gi|15674331|ref|NP_268505.1| hypothetical protein SPy_0108 [Streptococcus pyogenes M1 GAS] gi|71909907|ref|YP_281457.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS5005] gi|13621415|gb|AAK33226.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|71852689|gb|AAZ50712.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS5005] Length = 317 Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 97 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185 >gi|56808822|ref|ZP_00366535.1| COG0827: Adenine-specific DNA methylase [Streptococcus pyogenes M49 591] gi|209558673|ref|YP_002285145.1| Adenine-specific methyltransferase [Streptococcus pyogenes NZ131] gi|209539874|gb|ACI60450.1| Adenine-specific methyltransferase [Streptococcus pyogenes NZ131] Length = 317 Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 97 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185 >gi|325294970|ref|YP_004281484.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065418|gb|ADY73425.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 193 Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---HPNRLEIIQD 102 L+G+ +++ AG GN+ ++ GA+KV+ +E D++F ++++ + + EII D Sbjct: 44 LEGVKFLDLFAGTGNVGIEAISRGAKKVVFVENDKRFCNLIEENLRKLGVERGKYEIICD 103 Query: 103 D 103 D Sbjct: 104 D 104 >gi|307091892|gb|ADN28281.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 27/115 (23%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + ++ + S DG ++EIGAG G LT L +LG R+++ + DI +H + Sbjct: 6 IDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAV-----------DIDGRHVD 52 Query: 96 RLE-------IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 RL + + DAL++ ++ P+ ++ N+P++I T +L ++ W Sbjct: 53 RLRRRLPSVVVRRADALQIRLDR------PV-VVGNIPFHITTPILRRLLATGEW 100 >gi|19745287|ref|NP_606423.1| hypothetical protein spyM18_0110 [Streptococcus pyogenes MGAS8232] gi|139472971|ref|YP_001127686.1| hypothetical protein SpyM50091 [Streptococcus pyogenes str. Manfredo] gi|19747385|gb|AAL96922.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|134271217|emb|CAM29433.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 317 Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 97 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185 >gi|242242868|ref|ZP_04797313.1| methyltransferase [Staphylococcus epidermidis W23144] gi|242233681|gb|EES35993.1| methyltransferase [Staphylococcus epidermidis W23144] gi|319400927|gb|EFV89146.1| methyltransferase domain protein [Staphylococcus epidermidis FRI909] Length = 239 Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 D +++IG G GNLTQ+L +LG + I D + I+SQ N+++ I+ + Sbjct: 34 DSHDLLDIGCGTGNLTQLLTSLGEVTGMDISVD------MLSIASQKTNQVKWIEGNMTH 87 Query: 107 VDFEKFFNI 115 + K FN+ Sbjct: 88 FNLNKKFNM 96 >gi|260912006|ref|ZP_05918569.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633884|gb|EEX52011.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 482 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G ++E AG GN+ + L GA +VI EKD+ +L +++ +D L V Sbjct: 29 GKVILEPSAGSGNIVRWLKNNGAGEVIACEKDKHLQKLL-------AGECQLLAEDFLSV 81 Query: 108 DFEKFFNISSPIRIIANLPYNIGTR 132 E+ +S I+ N P++ G R Sbjct: 82 TAEQ---VSHIDYIVMNPPFSEGIR 103 >gi|552002|gb|AAA26876.1| ermAM protein A [Plasmid pAM-beta-1] Length = 94 Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 9/90 (10%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 KY QNFL +L +I + + TV EIG G G+LT L + +++V IE D Sbjct: 6 KY-SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHL 63 Query: 83 FPILKDISSQH---PNRLEIIQDDALKVDF 109 F ++SS+ R+ +I D L+ F Sbjct: 64 F----NLSSEKLKLNTRVTLIHQDILQFQF 89 >gi|190346593|gb|EDK38715.2| hypothetical protein PGUG_02814 [Meyerozyma guilliermondii ATCC 6260] Length = 447 Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKV 107 +V+ G G G L Q+++ + + K+ +EK+ Q ILK+ ++ +R+EI+ DA +V Sbjct: 293 SVLVAGPGRGPLLQIVVEMSSAKITGVEKNPQCIDILKERNAHEWQDRVEIVHKDAREV 351 >gi|226304682|ref|YP_002764640.1| methyltransferase [Rhodococcus erythropolis PR4] gi|226183797|dbj|BAH31901.1| putative methyltransferase [Rhodococcus erythropolis PR4] Length = 250 Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust. Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 49 ITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 TV+++ GPG+L+ +L V+ I+ D + + S++ +RL+++ D L Sbjct: 43 FTVVDLACGPGSLSARILEKFKHASVVGIDYDPMLLEVARQSSTRFGDRLQLVDADLLST 102 Query: 108 DFEKFFNISSPIRIIAN 124 D+ ++++P++ I + Sbjct: 103 DWPT--SVTAPVQAIVS 117 >gi|151301132|ref|NP_001093089.1| methyltransferase [Bombyx mori] gi|87248173|gb|ABD36139.1| S-adenosylmethionine-dependent methyltransferase [Bombyx mori] gi|95102706|gb|ABF51291.1| methyltransferase [Bombyx mori] Length = 214 Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHP 94 L I G L+ +++ G GPGNL+ + LGA V +E D + ++ I Sbjct: 41 LYTIQTQFGDLEDKLILDAGCGPGNLSIGAVLLGAGFVTSVEIDADALEVFQENIQEMEI 100 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 ++I+Q D L + ++ N+ +I N P+ GT+ Sbjct: 101 ENIDIVQCDFLSESYFRWENMFDT--VIMNPPF--GTK 134 >gi|21909621|ref|NP_663889.1| hypothetical protein SpyM3_0085 [Streptococcus pyogenes MGAS315] gi|28894998|ref|NP_801348.1| hypothetical protein SPs0086 [Streptococcus pyogenes SSI-1] gi|21903803|gb|AAM78692.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810243|dbj|BAC63181.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 317 Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 97 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IQ+DA++ K +I +I++LP Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185 >gi|18542240|gb|AAL75493.1| ErmC [Staphylococcus aureus] gi|18542242|gb|AAL75494.1| ErmC [Staphylococcus aureus] gi|18542244|gb|AAL75495.1| ErmC [Staphylococcus aureus] gi|18542246|gb|AAL75496.1| ErmC [Staphylococcus aureus] Length = 127 Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 + EIG+G G+ T + L V IE D + ++ H N +++ D L+ F Sbjct: 5 IFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQFKFP 62 Query: 111 KFFNISSPIRIIANLPYNIGT----RLLFNWISADTW 143 K + +I N+PYNI T +++F+ I+ + + Sbjct: 63 K----NQSYKIFGNIPYNISTDIIRKIVFDSIADEIY 95 >gi|313500268|gb|ADR61634.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 224 Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 + SHY++IP+ M LL + I + +A+S +L+ + I G GPG T + + +G + Sbjct: 24 VTSHYEVIPR--MHAQKLLPM-IKQLLADSGVALNALDAIAFGRGPGAFTGVRIAIGVVQ 80 Query: 73 VIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVD 108 + ++ P+ + +Q R + +Q A +D Sbjct: 81 GLAFALERPVLPVSNLAALAQGALREQGVQQVAAAID 117 >gi|269966803|ref|ZP_06180876.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 40B] gi|269828470|gb|EEZ82731.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 40B] Length = 295 Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 S L G TVI+ G G G L + LGA KVI I+ D Q KD + ++ ++LE+ Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213 Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123 Q + L D ++ P+R +A Sbjct: 214 YLPQNQPEGLVADVVVANILAGPLRELA 241 >gi|15897649|ref|NP_342254.1| dimethyladenosine transferase [Sulfolobus solfataricus P2] gi|284174975|ref|ZP_06388944.1| dimethyladenosine transferase [Sulfolobus solfataricus 98/2] gi|6015727|emb|CAB57554.1| rRNA N-6 methyl transferase [Sulfolobus solfataricus P2] gi|13813916|gb|AAK41044.1| rRNA adenine N-6-methyltransferase (erm/ksgA) [Sulfolobus solfataricus P2] gi|261602418|gb|ACX92021.1| ribosomal RNA adenine methylase transferase [Sulfolobus solfataricus 98/2] Length = 194 Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 39/198 (19%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G GN+T+ L I IE D + LK+ + ++ DA + Sbjct: 8 ILEIGCGKGNITRFL-----EPDICIELDDKMIEYLKNFN--------LVIADARYL--- 51 Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 P+ +++++LPY I + I + LTL+ QK+ ++I N Sbjct: 52 -------PVLRGQLVSSLPYQITSDFFKEVIKLNN----IRKLTLILQKDFVDKIF---N 97 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 Y +S L + + I P F P PKV S + F N I + + I Sbjct: 98 DSTY--ISFLLNYIYNIQIKDIIPPSCFSPRPKVYSIITIF----NRIREYDKEVDSILS 151 Query: 228 EAFGKRRKTLRQSLKRLG 245 R KTLR++ K G Sbjct: 152 CISRYRNKTLRKASKLCG 169 >gi|146418237|ref|XP_001485084.1| hypothetical protein PGUG_02814 [Meyerozyma guilliermondii ATCC 6260] Length = 447 Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKV 107 +V+ G G G L Q+++ + + K+ +EK+ Q ILK+ ++ +R+EI+ DA +V Sbjct: 293 SVLVAGPGRGPLLQIVVEMSSAKITGVEKNPQCIDILKERNAHEWQDRVEIVHKDAREV 351 >gi|50913487|ref|YP_059459.1| adenine-specific methyltransferase [Streptococcus pyogenes MGAS10394] gi|50902561|gb|AAT86276.1| Adenine-specific methyltransferase [Streptococcus pyogenes MGAS10394] Length = 332 Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92 IL + E D + V+EIG+G GNL Q LL T + + IE D + I+ Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + +Q+DA++ K +I +I++LP Sbjct: 172 MDSSAHFVQEDAVRPQLLKESDI-----VISDLP 200 >gi|8671851|gb|AAF78414.1|AC009273_20 Identical to dimethyladenosine transferase from Arabidopsis thaliana gb|AF051326. It contains ribosomal RNA adenine dimethylases PF|00398. This gene is cut off Length = 87 Score = 35.8 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 225 ITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + AF +RK LR+SL+ + E L AG+ R E L+++DF ++ N++ Sbjct: 29 LVNSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVI 84 >gi|18542234|gb|AAL75490.1| ErmC [Staphylococcus aureus] gi|18542236|gb|AAL75491.1| ErmC [Staphylococcus aureus] gi|18542238|gb|AAL75492.1| ErmC [Staphylococcus aureus] Length = 127 Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 + EIG+G G+ T + L V IE D + ++ H N +++ D L+ F Sbjct: 5 IFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQFKFP 62 Query: 111 KFFNISSPIRIIANLPYNIGT----RLLFNWISADTW 143 K + +I N+PYNI T +++F+ I+ + + Sbjct: 63 K----NQSYKIFGNIPYNISTDIIRKIVFDSIADEIY 95 >gi|307091900|gb|ADN28285.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ + E DG ++E+GAG G LT L LG R + IE D + L +S Sbjct: 2 DRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRTS 59 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + D+ ++ +P I+ NLP+++ T +L + W Sbjct: 60 ASTR--------VVDTDYLQYRLPRAPHVIVGNLPFHLTTAMLRRILHGPAW 103 >gi|328956907|ref|YP_004374293.1| putative AdoMet-dependent methyltransferase [Carnobacterium sp. 17-4] gi|328673231|gb|AEB29277.1| putative AdoMet-dependent methyltransferase [Carnobacterium sp. 17-4] Length = 214 Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 4/36 (11%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 NILK+I + SG + V+E G G GNLTQ LL+ G Sbjct: 36 NILKEIVQRSG----MNVLEFGIGTGNLTQRLLSSG 67 >gi|91228891|ref|ZP_01262793.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 12G01] gi|91187556|gb|EAS73886.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 12G01] Length = 295 Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 S L G TVI+ G G G L + LGA KVI I+ D Q KD + ++ ++LE+ Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213 Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123 Q + L D ++ P+R +A Sbjct: 214 YLPQNQPEGLVADVVVANILAGPLRELA 241 >gi|225869590|ref|YP_002745537.1| hypothetical protein SEQ_0117 [Streptococcus equi subsp. equi 4047] gi|225698994|emb|CAW92070.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 317 Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92 I+ I E+ S + + V+EIG+G GNL Q +L + + + IE D + I+ Sbjct: 97 IMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEI 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + + IQ+DA++ K ++ II++LP Sbjct: 157 MGSSAQFIQEDAIRPQLLKESDL-----IISDLP 185 >gi|225851286|ref|YP_002731520.1| hypothetical protein PERMA_1756 [Persephonella marina EX-H1] gi|225645830|gb|ACO04016.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 152 Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 13/104 (12%) Query: 36 LKKIAESSGSLD-----------GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +KKI +SG + G + +++ AG G + + GA +VI +EKD++ Sbjct: 1 MKKIRPTSGKVKQALFNILYDITGESFLDLFAGTGEIGLTAVKKGASQVIFVEKDRKRAE 60 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +K S++ ++I DA+K F K + + I A+ PY+ Sbjct: 61 QIKKKVSKYTQNFKVITADAIK--FLKNYKKEAFDIIFADPPYD 102 >gi|158341221|ref|YP_001522415.1| hypothetical protein AM1_F0111 [Acaryochloris marina MBIC11017] gi|158311462|gb|ABW33073.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 274 Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 ++ ++ E + +G ++EIG GPG T LG ++ +E + F+ I + S +P Sbjct: 41 LISRVVELTQLENGSRILEIGCGPGTATVSFANLGF-SMLCLEPNPDFYEIARRNCSHYP 99 Query: 95 NRLEI 99 N LEI Sbjct: 100 N-LEI 103 >gi|195166002|ref|XP_002023824.1| GL27200 [Drosophila persimilis] gi|194105984|gb|EDW28027.1| GL27200 [Drosophila persimilis] Length = 452 Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 50 TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+E+ G G+ T+ LL RK+I++E F P L ++ + +P R+++ D Sbjct: 74 TVLELNPGAGHFTRHLLDRETQFRKIILLESMDYFMPRLHELHTLYPERVKVRHGD 129 >gi|15922284|ref|NP_377953.1| hypothetical protein ST1967 [Sulfolobus tokodaii str. 7] gi|15623073|dbj|BAB67062.1| 244aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 244 Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103 ++ G V++IGAG G+ + T+GA++V+ +E D++ ++++ + + N + ++ Sbjct: 100 NVKGKRVLDIGAGVGDSSIYFSTMGAKEVVAVEIDKKKIELMRENLRTNGINNVIVVDKG 159 Query: 104 ALKVDFEKFFNISSPIR 120 VD E F + I+ Sbjct: 160 VGTVDNENFISWERLIK 176 >gi|158340651|ref|YP_001521819.1| hypothetical protein AM1_D0008 [Acaryochloris marina MBIC11017] gi|158310892|gb|ABW32505.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 275 Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 ++ ++ E + +G ++EIG GPG T LG ++ +E + F+ I + S +P Sbjct: 42 LISRVVELTQLENGSRILEIGCGPGTATVSFANLGF-SMLCLEPNPDFYEIARRNCSHYP 100 Query: 95 NRLEI 99 N LEI Sbjct: 101 N-LEI 104 >gi|310657947|ref|YP_003935668.1| methyltransferase [Clostridium sticklandii DSM 519] gi|308824725|emb|CBH20763.1| putative methyltransferase [Clostridium sticklandii] Length = 250 Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++E+G G GN+T+ LL +G +V+ I+ +Q + + + +++ +++ D ++DFE Sbjct: 41 ILELGCGSGNITKHLLDMGY-EVVGIDISEQMLELAHEKLKDYEDKVILMEQDIRELDFE 99 Query: 111 KF 112 + Sbjct: 100 IY 101 >gi|28899657|ref|NP_799262.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|153839616|ref|ZP_01992283.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus AQ3810] gi|260361497|ref|ZP_05774544.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus K5030] gi|260878172|ref|ZP_05890527.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260895468|ref|ZP_05903964.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus Peru-466] gi|260903324|ref|ZP_05911719.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus AQ4037] gi|38605240|sp|Q87KU2|PRMA_VIBPA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|28807909|dbj|BAC61146.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|149746855|gb|EDM57843.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus AQ3810] gi|308088059|gb|EFO37754.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308094108|gb|EFO43803.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308109531|gb|EFO47071.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308112847|gb|EFO50387.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus K5030] gi|328472221|gb|EGF43091.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus 10329] Length = 295 Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 S L G TVI+ G G G L + LGA KVI I+ D Q KD + ++ ++LE+ Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213 Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123 Q + L D ++ P+R +A Sbjct: 214 YLPQNQPEGLIADVVVANILAGPLRELA 241 >gi|170047169|ref|XP_001851106.1| methyltransferase [Culex quinquefasciatus] gi|167869669|gb|EDS33052.1| methyltransferase [Culex quinquefasciatus] Length = 215 Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 21 PKKYMGQNFL---LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 PK Y+ Q + + L I + G L+ V+++G GPG L+ LGA+ V+ IE Sbjct: 22 PKVYLEQYVTPSHIAAHALYTIETNYGDLENKLVLDLGCGPGMLSIGAALLGAQHVVGIE 81 Query: 78 KDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 D + ++ + ++ +Q D L +D ++I ++ N P+ GT+ Sbjct: 82 IDLDAIKVFQENVQGFELENVDCVQWDVLNLD--GLYDILKFDTVLMNPPF--GTK 133 >gi|195977274|ref|YP_002122518.1| adenine-specific methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973979|gb|ACG61505.1| adenine-specific methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 317 Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92 I+ I E+ S + + V+EIG+G GNL Q +L + + + IE D + I+ Sbjct: 97 IMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEI 156 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + + IQ+DA++ K ++ II++LP Sbjct: 157 MGSSAQFIQEDAVRPQLLKESDL-----IISDLP 185 >gi|324998303|ref|ZP_08119415.1| rRNA (adenine-N(6)-)-methyltransferase [Pseudonocardia sp. P1] Length = 294 Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D + +A + ++E+GAG G LT LL LG R V +E D Sbjct: 17 GQNFLADPAVPAALAAVAAGWPPRPLLELGAGDGALTAALLDLG-RPVTAVELDPYR--- 72 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + + +++ D ++ + + +++N+PY + T LL ++A P Sbjct: 73 ASRLGERFGTAVDVRHGDLVREPLGRAVD------VVSNVPYALTTPLLRRLLAA----P 122 Query: 146 FWESLTLLFQKEVGERITA 164 W LL Q EV + A Sbjct: 123 RWGHALLLLQWEVARKRAA 141 >gi|163803827|ref|ZP_02197677.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4] gi|159172370|gb|EDP57247.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4] Length = 295 Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 S L G TVI+ G G G L + LGA KVI I+ D Q +D + ++ ++LE+ Sbjct: 154 ESKDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVADQLEV 213 Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123 Q + L D ++ P+R +A Sbjct: 214 YLPQNQPEGLLADVVVANILAGPLRELA 241 >gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella thessalonicensis L13] Length = 314 Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 36/67 (53%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +LK++ E+ DG I+ G G T+ +L +VI +++D + + + +Q+P Sbjct: 6 LLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQLKAQYP 65 Query: 95 NRLEIIQ 101 +RL + Q Sbjct: 66 DRLFVFQ 72 >gi|325290428|ref|YP_004266609.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965829|gb|ADY56608.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 186 Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 V+++ AG GNL L+ GA+KV+++EKD + I+KD Sbjct: 45 VLDLFAGTGNLGLEALSRGAQKVVLVEKDPMAWNIIKD 82 >gi|262392969|ref|YP_003284823.1| ribosomal protein L11 methyltransferase [Vibrio sp. Ex25] gi|262336563|gb|ACY50358.1| ribosomal protein L11 methyltransferase [Vibrio sp. Ex25] Length = 295 Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 S L G TVI+ G G G L + LGA KVI I+ D Q KD + ++ ++LE+ Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213 Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123 Q + L D ++ P+R +A Sbjct: 214 YLPQNQPEGLIADVVVANILAGPLRELA 241 >gi|312878182|ref|ZP_07738111.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A] gi|311795046|gb|EFR11446.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A] Length = 199 Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 17/89 (19%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIV--------IEKDQQFFPIL 86 LKKI + + +G TV+++G G G L LL +G IV IEK +Q F Sbjct: 25 LKKIIDMTDIKEGDTVLDVGCGTGVLEGYLLKKVGKSGKIVAVDISEKMIEKAKQKF--- 81 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNI 115 KD S+ + + DAL +DFE++F++ Sbjct: 82 KDASN-----ITFLCADALCLDFEEYFDV 105 >gi|325278138|ref|ZP_08143648.1| peptidase M22 glycoprotease [Pseudomonas sp. TJI-51] gi|324096737|gb|EGB95073.1| peptidase M22 glycoprotease [Pseudomonas sp. TJI-51] Length = 224 Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 + SHY++IP+ M LL + I + +A+S +L+ + I G GPG T + + +G + Sbjct: 24 VTSHYEVIPR--MHAQKLLPM-IKQLLADSGVALNALDAIAFGRGPGAFTGVRIAIGVVQ 80 Query: 73 VIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVD 108 + ++ P+ + +Q R + +Q A +D Sbjct: 81 GLAFALERPVLPVSNLAALAQGALREQGVQQVAAAID 117 >gi|194336451|ref|YP_002018245.1| phospholipid N-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|194308928|gb|ACF43628.1| phospholipid N-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 179 Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 10/62 (16%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-------FPILKDI 89 K + +S LD VIEIGAG G +T+ + +L +++E DQ+F FP LK + Sbjct: 37 KAMFKSIKELDDTAVIEIGAGTGAITKHISSLNP---LLVEIDQEFCAVLRKNFPHLKTV 93 Query: 90 SS 91 +S Sbjct: 94 NS 95 >gi|308188308|ref|YP_003932439.1| ribosomal protein L11 methyltransferase [Pantoea vagans C9-1] gi|308058818|gb|ADO10990.1| ribosomal protein L11 methyltransferase [Pantoea vagans C9-1] Length = 293 Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100 L+G TVI+ G G G L L LGA + I I+ D Q +D + ++ +RL + Sbjct: 156 DLEGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRDNAKRNGVSDRLSLYLP 215 Query: 101 --QDDALKVDFEKFFNISSPIRIIANL 125 Q D L+ D ++ P+R +A L Sbjct: 216 HQQPDNLQADVVVANILAGPLRELAPL 242 >gi|288904317|ref|YP_003429538.1| hypothetical protein GALLO_0094 [Streptococcus gallolyticus UCN34] gi|306830347|ref|ZP_07463517.1| adenine-specific methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977312|ref|YP_004287028.1| site-specific DNA-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731042|emb|CBI12586.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427372|gb|EFM30474.1| adenine-specific methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177240|emb|CBZ47284.1| site-specific DNA-methyltransferase (adenine-specific) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 318 Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 D I ++EIG+G GNL Q LL ++++ + IE D + I+ + + IQ+DA Sbjct: 109 DKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSDAQFIQEDA 168 Query: 105 LKVDFEKFFNISSPIRIIANLP 126 ++ K ++ II++LP Sbjct: 169 VRPQILKESDV-----IISDLP 185 >gi|295681385|ref|YP_003609959.1| NLPA lipoprotein [Burkholderia sp. CCGE1002] gi|295441280|gb|ADG20448.1| NLPA lipoprotein [Burkholderia sp. CCGE1002] Length = 275 Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 HY+I+P +G ++ + + + +S +L I + P N + LL L A +I Sbjct: 99 HYQIVP---VGYTYVQPIGLYSRKVKSVAALPQNATIGVPNDPSNEGRALLLLQANGLIK 155 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDA 104 + D + P +DI+ +P ++I + DA Sbjct: 156 LRPDVRLLPTARDIAD-NPKHIQIKELDA 183 >gi|307721507|ref|YP_003892647.1| methyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306979600|gb|ADN09635.1| methyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 199 Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAES----------SGSLDGITVIEIGAGPGNLTQMLLT 67 KII KY G+ LL + ++S + +E+ +G G++ L+ Sbjct: 9 KIIAGKYKGKTLLLPSKTTTRSSKSIVLESFFNTLQFDIVDANFVEVFSGSGSIGLEALS 68 Query: 68 LGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDAL 105 GA+K+ +EKD LK +I+ PN E+ D+ Sbjct: 69 RGAKKIYFMEKDSNAVKTLKQNIAQTDPNACEVFAGDSF 107 >gi|224372530|ref|YP_002606902.1| N6-adenine-specific methylase [Nautilia profundicola AmH] gi|223589616|gb|ACM93352.1| N6-adenine-specific methylase [Nautilia profundicola AmH] Length = 192 Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 11/103 (10%) Query: 15 SHYKIIPKKYMGQNFLLD--------LNILKKIAESS--GSLDGITVIEIGAGPGNLTQM 64 S+ KII KY G+ + NILK+ ++ + T +E+ +G G++ Sbjct: 4 SNIKIIGGKYRGKKLYMGDKEVTRSTKNILKESVFNTLQWEVPDSTWVEMFSGVGSIGLE 63 Query: 65 LLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALK 106 ++ GA+K +EKD + +L K+I S P + EII D+ + Sbjct: 64 AISRGAKKAYFLEKDPEAARVLKKNIDSMDPEKCEIILGDSFE 106 Searching..................................................done Results from round 2 >gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040075|gb|ACT56871.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN Sbjct: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR Sbjct: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW Sbjct: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS Sbjct: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI Sbjct: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 >gi|15888443|ref|NP_354124.1| dimethyladenosine transferase [Agrobacterium tumefaciens str. C58] gi|27151578|sp|Q8UGD5|RSMA_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15156135|gb|AAK86909.1| rRNA-adenine N6,N6-dimethyltransferase [Agrobacterium tumefaciens str. C58] Length = 276 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 146/276 (52%), Positives = 198/276 (71%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG Sbjct: 1 MAAIDGLPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L+LGA+KVI +E+D + P+L +I + +P RLE+I+ DALK DFE P+R Sbjct: 61 LTRAILSLGAKKVIAVERDSRCLPVLAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW S+TL+FQKEVG+RI A++ HYGRL VL GW Sbjct: 121 IIANLPYNVGTQLLVNWLLPREWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT + M FD+ P F P PKVTSTV+H +P P+PC + L+++T+ AFG+RRK LRQS Sbjct: 181 RTVSEMAFDVPPQAFSPPPKVTSTVVHLLPKDKPLPCDVAKLERVTEAAFGQRRKMLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +K LGGE LL +AGI+ RAE LS+E+F + N L Sbjct: 241 VKSLGGETLLEKAGIDPTRRAETLSVEEFVTLANCL 276 >gi|315122190|ref|YP_004062679.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495592|gb|ADR52191.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 283 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 217/283 (76%), Positives = 249/283 (87%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NK +SLK ILS Y I+P K MGQNFL D+N+LKKIA +SGSL+G+T IEIG GPGN Sbjct: 1 MISKNKKNSLKNILSRYDIVPHKNMGQNFLFDINLLKKIATTSGSLNGVTAIEIGPGPGN 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LTQ+LL LGA+KVIV+EKD QF PIL +IS Q+PNRLEIIQ DALK+DF++ +I +PIR Sbjct: 61 LTQILLELGAQKVIVVEKDPQFLPILNNISLQYPNRLEIIQGDALKIDFKELSHIPAPIR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 II+NLPYNIGTRLLFNWI++ TWPPFWESLTLLFQKEVG+RITAQKN PHYGRLS+LT W Sbjct: 121 IISNLPYNIGTRLLFNWITSSTWPPFWESLTLLFQKEVGKRITAQKNDPHYGRLSILTSW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA +MFDI PHVFFP PK+TSTV+HF PHLNPIPCCLESLKKITQEAFGKRRKTLRQS Sbjct: 181 RTKAKIMFDIPPHVFFPKPKITSTVVHFTPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 LK L GENLL QAGIE++LRAENLSIEDFCRITNI ++N +++ Sbjct: 241 LKPLEGENLLRQAGIESSLRAENLSIEDFCRITNIFSENNNVS 283 >gi|325292482|ref|YP_004278346.1| dimethyladenosine transferase [Agrobacterium sp. H13-3] gi|325060335|gb|ADY64026.1| dimethyladenosine transferase [Agrobacterium sp. H13-3] Length = 276 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 148/276 (53%), Positives = 197/276 (71%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG Sbjct: 1 MAAIDGLPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L+LGA+KVI IE+D + P L +I + +P RLE+I+ DALK DFE P+R Sbjct: 61 LTRAILSLGAKKVIAIERDSRCLPALAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW S+TL+FQKEVG+RI A++ HYGRL VL GW Sbjct: 121 IIANLPYNVGTQLLVNWLLPKEWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT + M FD+ P F P PKVTSTV+H +P P+PC + L+K+T+ AFG+RRK LRQS Sbjct: 181 RTVSEMAFDVPPQAFSPPPKVTSTVVHLLPKEKPLPCDVAKLEKVTEAAFGQRRKMLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +K LGGE LL +AGI+ RAE LS+E+F + N L Sbjct: 241 VKSLGGEVLLEKAGIDATRRAETLSVEEFVTLANCL 276 >gi|307317707|ref|ZP_07597145.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83] gi|306896469|gb|EFN27217.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83] Length = 274 Score = 351 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 151/276 (54%), Positives = 197/276 (71%), Gaps = 2/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KV+ IE+D + P L +I + +P RL+II+ DALKVDFE P+R Sbjct: 61 LTRAILALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEGDALKVDFEALA--GGPVR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+S+TL+FQ+EVG RI A + HYGRL VL GW Sbjct: 119 IIANLPYNVGTQLLVNWLLPGHWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA + FD+ P F P PKVTSTV+H P PIPC L+K+TQ AFG+RRK LRQS Sbjct: 179 RTKARLAFDVPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL +AGI+ RAE L++E+FCR+ N L Sbjct: 239 LKPLGGEALLAKAGIDPQRRAETLTVEEFCRLANCL 274 >gi|218673561|ref|ZP_03523230.1| dimethyladenosine transferase [Rhizobium etli GR56] Length = 275 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 155/276 (56%), Positives = 202/276 (73%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+L+ TVIE+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEETTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGARKVI IE+D + P L +I+ +P RLE+I+ DALK DFE P++ Sbjct: 61 LTRAILALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPEG-PVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A M FD+SP F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQS Sbjct: 180 RTEARMAFDVSPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE+LL +AGI+ RAE LS+E+FC + N L Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|150395984|ref|YP_001326451.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419] gi|166221706|sp|A6U7I6|RSMA_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150027499|gb|ABR59616.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419] Length = 274 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 151/276 (54%), Positives = 200/276 (72%), Gaps = 2/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+G+TVIE+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEGVTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KV+ IE+D + P L +I + +P RL++++ DALKVDFE + P+R Sbjct: 61 LTRAILALGAKKVVAIERDSRCLPALAEIGAHYPERLDVVEGDALKVDFEALAD--GPVR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+S+TL+FQ+EVG RI A + HYGRL VL GW Sbjct: 119 IIANLPYNVGTQLLVNWLLPGRWPPFWQSMTLMFQREVGLRIVASPDDDHYGRLGVLCGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA++ FD+ P F P PKVTSTV+H P PIPC L+K+TQ AFG+RRK LRQS Sbjct: 179 RTKASLAFDVPPQAFTPPPKVTSTVVHLEPIEVPIPCSPAVLEKVTQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL +AGI+ RAE LS+E+FCR+ N L Sbjct: 239 LKPLGGEALLAKAGIDPKRRAETLSVEEFCRLANCL 274 >gi|227821471|ref|YP_002825441.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234] gi|254807879|sp|C3M9C2|RSMA_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|227340470|gb|ACP24688.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234] Length = 296 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 150/276 (54%), Positives = 202/276 (73%), Gaps = 2/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGARKV+ IE+D + P L +IS+ +P RL++++ DALKVDFE+ P+R Sbjct: 61 LTRAILALGARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVDFERLAE--GPVR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ + WPPFW+S+TL+ Q+EVG RI A + HYGRL VL GW Sbjct: 119 IIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIVAGADDDHYGRLGVLCGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA + FD+ P F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQS Sbjct: 179 RTKARLAFDVPPQAFTPPPKVTSTVVHLEPIDNPIPCAVSALEKVTQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK +GGE LL +AGI+ RAE L++E+FCR+ N L Sbjct: 239 LKSIGGEALLGKAGIDPQRRAETLTVEEFCRLANCL 274 >gi|15964902|ref|NP_385255.1| dimethyladenosine transferase [Sinorhizobium meliloti 1021] gi|307300972|ref|ZP_07580741.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C] gi|27151590|sp|Q92QZ1|RSMA_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15074081|emb|CAC45728.1| Putative dimethyladenosine transferase [Sinorhizobium meliloti 1021] gi|306903927|gb|EFN34513.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C] Length = 274 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 152/276 (55%), Positives = 199/276 (72%), Gaps = 2/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KV+ IE+D + P L +I + +P RL+II+DDALKVDFE + P+R Sbjct: 61 LTRAILALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEDDALKVDFEALAD--GPVR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+S+TL+FQ+EVG RI A + HYGRL VL GW Sbjct: 119 IIANLPYNVGTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA + FD+ P F P PKVTSTV+H P PIPC L+K+TQ AFG+RRK LRQS Sbjct: 179 RTKARLAFDVPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL +AGI+ RAE L++E+FCR+ N L Sbjct: 239 LKPLGGEALLAKAGIDPQRRAETLTVEEFCRLANCL 274 >gi|319784428|ref|YP_004143904.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170316|gb|ADV13854.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 279 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 139/280 (49%), Positives = 190/280 (67%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT+ + L+ ++ + + KK +GQNFLLDLN+ KIA ++G L TVIE+G GPG Sbjct: 1 MTI-DGLPPLREVIERHGLQAKKALGQNFLLDLNLTGKIARTAGDLSDATVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116 LT+ LL GAR+VI IE+D++ L ++S +P RLE++ DALK DF Sbjct: 60 LTRALLANGARQVIAIERDERCLAALAEVSGHYPGRLEVVSGDALKTDFTGLAGRATGNG 119 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P++I+ANLPYNIGT LL W++ WPPF+ S+TL+FQ+EV ERI A S YGRL V Sbjct: 120 GPVKIVANLPYNIGTELLVRWLTVSDWPPFYTSMTLMFQREVAERIVAPAGSDSYGRLGV 179 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L GWRT+A + FD+ P F P PKVTS+V+H +P P+P ++ L ++T+ AFG+RRK Sbjct: 180 LAGWRTEARIAFDVPPQAFTPPPKVTSSVVHLVPRPMPLPTEVKKLGRVTEAAFGQRRKM 239 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LRQS+K LGGE LL +AGI+ RAE LS+E+F R+TN + Sbjct: 240 LRQSVKSLGGEALLDRAGIDPTRRAETLSVEEFVRLTNAV 279 >gi|241203944|ref|YP_002975040.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857834|gb|ACS55501.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 153/276 (55%), Positives = 202/276 (73%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+LD T++E+G GPG Sbjct: 1 MAPLDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGTLDEATIVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGARKVI IE+D + P L +I+ +P RLE+I+ DALK+DFE P++ Sbjct: 61 LTRAILALGARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVPEG-PVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A M FD+ P F P PKVTSTV+H IP PIPC + +L+K+TQ AFG+RRK LRQS Sbjct: 180 RTEARMAFDVPPQAFTPPPKVTSTVVHLIPRDTPIPCAVANLEKVTQAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE+LL +AGI+ RAE LS+E+FC + N L Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|222085448|ref|YP_002543978.1| dimethyladenosine transferase [Agrobacterium radiobacter K84] gi|221722896|gb|ACM26052.1| dimethyladenosine transferase [Agrobacterium radiobacter K84] Length = 276 Score = 344 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 153/276 (55%), Positives = 201/276 (72%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +K+A ++GSL+G+TV E+G GPG Sbjct: 2 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGG 61 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA KVI IE+D + P L +I+ +P RLE+I+ DALK DF + P++ Sbjct: 62 LTRAILALGAAKVIAIERDARCLPALAEIADHYPGRLEVIEGDALKTDFAGMASEG-PVK 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVG+RI A ++ HYGRL VL GW Sbjct: 121 IIANLPYNVGTQLLVNWLLPGHWPPFWQSLTLMFQKEVGQRIVADEDDDHYGRLGVLCGW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A M FDISP F P PKVTSTV+H P NPIPC ++ L+K+TQ AFG+RRK LRQS Sbjct: 181 RTQAHMAFDISPQAFSPPPKVTSTVVHLTPRENPIPCSVDKLEKVTQAAFGQRRKMLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL +A I+ RAE LS+E+FCR+ N L Sbjct: 241 LKPLGGETLLQKADIDPQRRAETLSVEEFCRLANCL 276 >gi|209548666|ref|YP_002280583.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226732614|sp|B5ZWD8|RSMA_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209534422|gb|ACI54357.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 275 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 151/276 (54%), Positives = 197/276 (71%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+L+ T+ E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEEATIFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGARKVI +E+D + P L +I+ +P RLE+I+ DALK DFE PI+ Sbjct: 61 LTRAILALGARKVIAVERDTRCLPALAEIADHYPGRLEVIEGDALKTDFEALA-PDGPIK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVASEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+ M FD+ P F P PKVTSTV+H P NPIPC + L+K+TQ AFG+RRK LRQS Sbjct: 180 RTQTRMAFDVPPQAFTPPPKVTSTVVHLTPRENPIPCAVGDLEKVTQAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL +AGI+ RAE LS+E+FC + N L Sbjct: 240 LKPLGGERLLVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|116251330|ref|YP_767168.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae 3841] gi|118600891|sp|Q1MJ01|RSMA_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115255978|emb|CAK07059.1| putative dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae 3841] Length = 275 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 152/276 (55%), Positives = 198/276 (71%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +KIA ++G+L+ TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEDATVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGARKVI IE+D + P L +I+ +P RLE+I+ DALK DFE PI+ Sbjct: 61 LTRAILALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFETLAPQG-PIK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A M FD+ P F P PKVTSTV+ P NPIPC + +L+K+TQ AFG+RRK LRQS Sbjct: 180 RTEARMAFDVPPQAFTPPPKVTSTVVQLTPRENPIPCAVSNLEKVTQAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL +AGI+ RAE LS+++FC + N L Sbjct: 240 LKPLGGERLLVKAGIDPARRAETLSVKEFCLLANSL 275 >gi|327188008|gb|EGE55238.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CNPAF512] Length = 275 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 151/276 (54%), Positives = 201/276 (72%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KV+ +E+D + P L +I+ +P RLE+I+ DALK DFE P++ Sbjct: 61 LTRAILALGAKKVVAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFESQAPEG-PVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA M FD+ P F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQS Sbjct: 180 RTKARMAFDVPPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE+LL +AGI+ RAE LS+E+FC + N L Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|190891131|ref|YP_001977673.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CIAT 652] gi|218515820|ref|ZP_03512660.1| dimethyladenosine transferase [Rhizobium etli 8C-3] gi|226732613|sp|B3PUU6|RSMA_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|190696410|gb|ACE90495.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CIAT 652] Length = 275 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 150/276 (54%), Positives = 201/276 (72%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KVI +E+D + P L +I+ +P RLE+I+ DALK DFE + ++ Sbjct: 61 LTRAILALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFESLAPEGA-VK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A M FD+ P F P PKVTSTV+H P NPIPC + +L+K+TQ AFG+RRK LRQS Sbjct: 180 RTEARMAFDVPPQAFTPPPKVTSTVVHLTPRKNPIPCSVANLEKVTQAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE+LL +AGI+ RAE LS+E+FC + N L Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275 >gi|260466951|ref|ZP_05813133.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075] gi|259029248|gb|EEW30542.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075] Length = 274 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 138/276 (50%), Positives = 191/276 (69%), Gaps = 2/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ +++ KK +GQNFLLDLN+ KIA ++G L T+IE+G GPG Sbjct: 1 MSI-DGLPPLRDVIERHELQAKKALGQNFLLDLNLTSKIARAAGDLTNTTIIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+VI IE+D++ L ++S +P RLEII DALK DF +P + Sbjct: 60 LTRALLFNGARRVIAIERDERCLAALAEVSEHYPGRLEIIAGDALKTDFAALA-AGAPTK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNIGT LL W++ WPPF+ S+TL+FQ+EV +RI A S YGRL VL GW Sbjct: 119 IVANLPYNIGTELLIRWLTVTDWPPFYASMTLMFQREVAQRIVAAPGSDAYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKVTS+V+H P P+P ++ L ++T+ AFG+RRK LRQS Sbjct: 179 RTQARIAFDVPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +K LGGE LL +AGI+ RAE LS+E+F R+TN++ Sbjct: 239 VKSLGGETLLERAGIDPTRRAETLSVEEFVRLTNLV 274 >gi|110634113|ref|YP_674321.1| dimethyladenosine transferase [Mesorhizobium sp. BNC1] gi|118600875|sp|Q11HG9|RSMA_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110285097|gb|ABG63156.1| dimethyladenosine transferase [Chelativorans sp. BNC1] Length = 275 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 133/276 (48%), Positives = 192/276 (69%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+M + L+ ++ + + +K +GQNFLLDLN+ ++IA ++G LD TV+E+G GPG Sbjct: 1 MSM-DGLPPLRDVIERHGLFARKALGQNFLLDLNLTRRIARTAGGLDNATVLEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IE+D++ L++I++ +P RLEI+ DA+K DF S ++ Sbjct: 60 LTRALLMEGARRVVAIERDERCIAALEEIAAHYPGRLEIVAGDAMKADFAALAGNSGDVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNIGT LL W++ TWPPF+ES+TL+FQ+EV ERI A+ S HYGRL VL GW Sbjct: 120 IVANLPYNIGTELLIRWLTPQTWPPFYESMTLMFQREVAERIVAKPGSSHYGRLGVLAGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+ +P +P+ + L + T+ AFG+RRK LRQS Sbjct: 180 RTEARIAFDVPPQAFTPPPKVISSVVKIVPRADPLTVEVGRLARTTEAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ +GGE LL +AGI+ RAE LS+E+F R+ + Sbjct: 240 LRSVGGEALLEKAGIDGTRRAETLSVEEFVRLAREI 275 >gi|86357087|ref|YP_468979.1| dimethyladenosine transferase [Rhizobium etli CFN 42] gi|119365052|sp|Q2KA84|RSMA_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86281189|gb|ABC90252.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Rhizobium etli CFN 42] Length = 275 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 148/276 (53%), Positives = 199/276 (72%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +K+A ++G+L+ TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGALEETTVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KVI +E+D + P L +I+ +P RLE+I+ DALK DFE P++ Sbjct: 61 LTRAILALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFEALAPEG-PVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT A M FD+ P F P PKVTSTV+H +P NP+ C + +L+K+TQ AFG+RRK LRQS Sbjct: 180 RTDARMAFDVPPQAFTPPPKVTSTVVHLLPRENPVQCAVANLEKVTQAAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE+LL +AGI+ RAE LS+E+FC + N L Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANNL 275 >gi|222148148|ref|YP_002549105.1| dimethyladenosine transferase [Agrobacterium vitis S4] gi|254807854|sp|B9JUV4|RSMA_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221735136|gb|ACM36099.1| rRNA-adenine N6N6-dimethyltransferase [Agrobacterium vitis S4] Length = 275 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 153/276 (55%), Positives = 198/276 (71%), Gaps = 1/276 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLNI +K+A ++G L TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNITQKVARTAGDLTNATVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGA+KVI IE+D + P L +IS +P RLE+I+ DALK DFE P++ Sbjct: 61 LTRALLALGAKKVIAIERDSRCLPALAEISDHYPGRLEVIEGDALKTDFEAMA-PDGPVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVG+RI A+ + HYGRL VL GW Sbjct: 120 IVANLPYNVGTQLLINWLMPRQWPPFWDSLTLMFQKEVGQRIVAEADDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A M FD+SP F P PKVTSTV+H P PIPC + L+K+TQ AFG+RRK LR S Sbjct: 180 RTEAHMAFDLSPQAFTPPPKVTSTVVHLTPRPAPIPCEIAKLEKLTQAAFGQRRKMLRAS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LGGE LL++A I+ + RAE LS+E+FCRI N+L Sbjct: 240 LKPLGGEALLNRAEIDPSRRAETLSVEEFCRIANLL 275 >gi|62289644|ref|YP_221437.1| dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941] gi|81309439|sp|Q57E58|RSMA_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62195776|gb|AAX74076.1| KsgA, dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941] Length = 276 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGAALLEKMGIDGTRRAETLSVEEFVALANA 273 >gi|23501569|ref|NP_697696.1| dimethyladenosine transferase [Brucella suis 1330] gi|82699572|ref|YP_414146.1| dimethyladenosine transferase [Brucella melitensis biovar Abortus 2308] gi|148560508|ref|YP_001258664.1| dimethyladenosine transferase [Brucella ovis ATCC 25840] gi|161618651|ref|YP_001592538.1| dimethyladenosine transferase [Brucella canis ATCC 23365] gi|189023894|ref|YP_001934662.1| dimethyladenosine transferase [Brucella abortus S19] gi|225627179|ref|ZP_03785217.1| dimethyladenosine transferase [Brucella ceti str. Cudo] gi|225852202|ref|YP_002732435.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457] gi|237815135|ref|ZP_04594133.1| dimethyladenosine transferase [Brucella abortus str. 2308 A] gi|254688954|ref|ZP_05152208.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|254693436|ref|ZP_05155264.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|254697088|ref|ZP_05158916.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|254701465|ref|ZP_05163293.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|254704012|ref|ZP_05165840.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|254707614|ref|ZP_05169442.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|254709803|ref|ZP_05171614.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|254713807|ref|ZP_05175618.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|254717135|ref|ZP_05178946.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|254729984|ref|ZP_05188562.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|256031294|ref|ZP_05444908.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|256113218|ref|ZP_05454086.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|256159408|ref|ZP_05457186.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|256254702|ref|ZP_05460238.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|256257202|ref|ZP_05462738.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|256264290|ref|ZP_05466822.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9] gi|256369117|ref|YP_003106625.1| dimethyladenosine transferase [Brucella microti CCM 4915] gi|260168433|ref|ZP_05755244.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|260545604|ref|ZP_05821345.1| dimethyladenosine transferase [Brucella abortus NCTC 8038] gi|260566739|ref|ZP_05837209.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40] gi|260754443|ref|ZP_05866791.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|260757662|ref|ZP_05870010.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|260761489|ref|ZP_05873832.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|260883472|ref|ZP_05895086.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|261213689|ref|ZP_05927970.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|261218950|ref|ZP_05933231.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|261221882|ref|ZP_05936163.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|261315104|ref|ZP_05954301.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|261317341|ref|ZP_05956538.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|261321551|ref|ZP_05960748.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|261752008|ref|ZP_05995717.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|261754667|ref|ZP_05998376.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|261757895|ref|ZP_06001604.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|265988379|ref|ZP_06100936.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|265994629|ref|ZP_06107186.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|265997845|ref|ZP_06110402.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|297248052|ref|ZP_06931770.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196] gi|33516941|sp|Q8G1N0|RSMA_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122064285|sp|Q2YN15|RSMA_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221650|sp|A5VPL7|RSMA_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028802|sp|A9MA55|RSMA_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729760|sp|B2S4U1|RSMA_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807862|sp|C0RI23|RSMA_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23347481|gb|AAN29611.1| dimethyladenosine transferase [Brucella suis 1330] gi|82615673|emb|CAJ10660.1| SAM (and some other nucleotide) binding motif:Ribosomal RNA adenine dimethylase [Brucella melitensis biovar Abortus 2308] gi|148371765|gb|ABQ61744.1| dimethyladenosine transferase [Brucella ovis ATCC 25840] gi|161335462|gb|ABX61767.1| dimethyladenosine transferase [Brucella canis ATCC 23365] gi|189019466|gb|ACD72188.1| SAM (and some other nucleotide) binding motif [Brucella abortus S19] gi|225618014|gb|EEH15058.1| dimethyladenosine transferase [Brucella ceti str. Cudo] gi|225640567|gb|ACO00481.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457] gi|237789972|gb|EEP64182.1| dimethyladenosine transferase [Brucella abortus str. 2308 A] gi|255999277|gb|ACU47676.1| dimethyladenosine transferase [Brucella microti CCM 4915] gi|260097011|gb|EEW80886.1| dimethyladenosine transferase [Brucella abortus NCTC 8038] gi|260156257|gb|EEW91337.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40] gi|260667980|gb|EEX54920.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|260671921|gb|EEX58742.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|260674551|gb|EEX61372.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|260873000|gb|EEX80069.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|260915296|gb|EEX82157.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|260920466|gb|EEX87119.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|260924039|gb|EEX90607.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|261294241|gb|EEX97737.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|261296564|gb|EEY00061.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|261304130|gb|EEY07627.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|261737879|gb|EEY25875.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|261741761|gb|EEY29687.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|261744420|gb|EEY32346.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|262552313|gb|EEZ08303.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|262765742|gb|EEZ11531.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|263094550|gb|EEZ18359.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9] gi|264660576|gb|EEZ30837.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|297175221|gb|EFH34568.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196] gi|326408701|gb|ADZ65766.1| SAM (and some other nucleotide) binding motif protein [Brucella melitensis M28] gi|326538425|gb|ADZ86640.1| dimethyladenosine transferase [Brucella melitensis M5-90] Length = 276 Score = 338 bits (867), Expect = 6e-91, Method: Composition-based stats. Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|306845283|ref|ZP_07477859.1| dimethyladenosine transferase [Brucella sp. BO1] gi|306274442|gb|EFM56249.1| dimethyladenosine transferase [Brucella sp. BO1] Length = 276 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSVGGAALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|163842952|ref|YP_001627356.1| dimethyladenosine transferase [Brucella suis ATCC 23445] gi|189028803|sp|B0CL06|RSMA_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|163673675|gb|ABY37786.1| dimethyladenosine transferase [Brucella suis ATCC 23445] Length = 276 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGGALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|306842053|ref|ZP_07474726.1| dimethyladenosine transferase [Brucella sp. BO2] gi|306287894|gb|EFM59314.1| dimethyladenosine transferase [Brucella sp. BO2] Length = 276 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPEPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSVGGAALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|254718818|ref|ZP_05180629.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|265983803|ref|ZP_06096538.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|306838740|ref|ZP_07471574.1| dimethyladenosine transferase [Brucella sp. NF 2653] gi|264662395|gb|EEZ32656.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|306406142|gb|EFM62387.1| dimethyladenosine transferase [Brucella sp. NF 2653] Length = 276 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 137/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+++N L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSIDN-LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQCEVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPREAPLPCRAEKLGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|256060807|ref|ZP_05450967.1| dimethyladenosine transferase [Brucella neotomae 5K33] gi|261324799|ref|ZP_05963996.1| dimethyladenosine transferase [Brucella neotomae 5K33] gi|261300779|gb|EEY04276.1| dimethyladenosine transferase [Brucella neotomae 5K33] Length = 276 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 135/275 (49%), Positives = 182/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALTEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S YGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDRYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P PC E+L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPPPCRAEALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|13476521|ref|NP_108091.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099] gi|27151594|sp|Q984S7|RSMA_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|14027282|dbj|BAB54236.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099] Length = 279 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 137/280 (48%), Positives = 192/280 (68%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + + KK +GQNFLLDLN+ KIA S+G L VIE+G GPG Sbjct: 1 MSI-DGLPPLRDVIERHGLQAKKALGQNFLLDLNLTGKIARSAGDLTNTAVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--- 117 LT+ LL+ GAR+V+ IE+D++ L ++S+ +P RLE++ DALK DF + + Sbjct: 60 LTRALLSNGARRVVAIERDERCLAALAEVSAHYPGRLEVVSGDALKTDFAALASAAGGAS 119 Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +RI+ANLPYNIGT LL W++ WPPF+ S+TL+FQ+EV +RI A+ S YGRL V Sbjct: 120 GQVRIVANLPYNIGTELLVRWLTVVDWPPFYASMTLMFQREVAQRIVAEPGSDAYGRLGV 179 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 L GWRTKA + FD+ P F P PKVTS+V+H P P+P ++ L ++T+ AFG+RRK Sbjct: 180 LAGWRTKARIAFDVPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKM 239 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LRQS+K LGGE LL +AGI+ RAE LS+E+F R+TN + Sbjct: 240 LRQSVKSLGGEALLERAGIDPTRRAETLSVEEFVRLTNSV 279 >gi|294852044|ref|ZP_06792717.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026] gi|294820633|gb|EFG37632.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026] Length = 276 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 135/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KI +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKITRQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIVGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|17987550|ref|NP_540184.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|256044375|ref|ZP_05447279.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] gi|260563727|ref|ZP_05834213.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|265990793|ref|ZP_06103350.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] gi|27151583|sp|Q8YG94|RSMA_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|17983253|gb|AAL52448.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|260153743|gb|EEW88835.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|263001577|gb|EEZ14152.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] Length = 276 Score = 334 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G L VIE+G GPG Sbjct: 1 MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D + L +I++ +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKLDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A + FD+ P F P PKV S+V+H +P P+PC E+L +ITQ AFG+RRK LRQS Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273 >gi|307946738|ref|ZP_07662073.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4] gi|307770402|gb|EFO29628.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4] Length = 280 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 148/281 (52%), Positives = 192/281 (68%), Gaps = 3/281 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + KK +GQNFLLDLN+ +IA S+G L+G+TV+E+G GPG Sbjct: 1 MAQIDTLPPLREVIATHGLDAKKSLGQNFLLDLNLTSRIARSAGDLNGVTVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L GA +VI IEKD + P L +IS+ + +LE+I +DALK+D IS PI+ Sbjct: 61 LTRAILAAGADRVIAIEKDTRCLPALAEISNHYDGKLEVISEDALKIDPTSL-GISGPIK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NWI+ + WPPFW SLTLLFQKEVGERI A+ S YGRL VL W Sbjct: 120 IIANLPYNVGTQLLINWITTENWPPFWTSLTLLFQKEVGERIVAKPGSKAYGRLGVLASW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R ++ M+FDI P F P PKVTS V+H +P +P+PC L L+KIT AFG+RRK LR S Sbjct: 180 RCQSGMLFDIGPQAFTPPPKVTSAVVHLVPTHSPLPCDLNILEKITAAAFGQRRKMLRAS 239 Query: 241 LKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 LK LG E LL AGIE RAE + +E F RI N + Sbjct: 240 LKSLGKPPEPLLETAGIEPTTRAEQVDVEGFVRIANAYAAS 280 >gi|153009933|ref|YP_001371148.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188] gi|166221683|sp|A6X265|RSMA_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151561821|gb|ABS15319.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188] Length = 278 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 136/277 (49%), Positives = 183/277 (66%), Gaps = 2/277 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + ++PKK +GQNFL DLN+ KIA +G+L VIE+G GPG Sbjct: 1 MSI-DGLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGNLQDQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D++ L +I + +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A +S HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDSDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT + + FD+ P F P PKV S+V+H IP NP+PC +L +ITQ AFG+RRK LRQS Sbjct: 179 RTVSKISFDVPPQAFTPPPKVMSSVVHIIPRENPLPCNANALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKPVGGAELLEKTGIDGTRRAETLSVEEFVALANAYR 275 >gi|304392010|ref|ZP_07373952.1| dimethyladenosine transferase [Ahrensia sp. R2A130] gi|303296239|gb|EFL90597.1| dimethyladenosine transferase [Ahrensia sp. R2A130] Length = 279 Score = 331 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 131/277 (47%), Positives = 180/277 (64%), Gaps = 3/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ +++ KK +GQNFLLDLNI KIA ++G L TV+EIG GPG Sbjct: 1 MSHIDDLPPLREVIDRHELATKKSLGQNFLLDLNITMKIARAAGDLTRHTVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 LT+ LL GA+ V+ IE+D + P+L +IS +P RL +I+ DAL ++ E+ S Sbjct: 61 LTRALLASGAKHVVAIERDARCIPVLAEISDAYPGRLTVIEGDALALNHEQVLADAGASG 120 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++I ANLPYNI T L WI+ WPPFW +TL+FQ+EV +RI A+ +GRL VL Sbjct: 121 PVKIAANLPYNIATPLFTGWITGTNWPPFWNGMTLMFQREVAQRICAEPGDKAWGRLGVL 180 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 GWR+ A + FD+SP F+P PKVTS+V+ P P+P + L+KITQ AFG+RRK L Sbjct: 181 AGWRSHADIAFDLSPQAFWPPPKVTSSVVMVQPRAEPLPVAVSDLEKITQAAFGQRRKML 240 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 RQSLK + G + L GIE RAE L++EDF + N Sbjct: 241 RQSLKSMNGASRLEATGIEGTKRAEELAVEDFVALAN 277 >gi|154246772|ref|YP_001417730.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2] gi|226732642|sp|A7IJ80|RSMA_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|154160857|gb|ABS68073.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2] Length = 288 Score = 331 bits (849), Expect = 7e-89, Method: Composition-based stats. Identities = 139/285 (48%), Positives = 189/285 (66%), Gaps = 3/285 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA +SG L+G TV+E+G GPG Sbjct: 1 MSALDDLPPLRDVIRRHGLSAQKSLGQNFLLDLNLTGRIARASGPLEGATVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGAR+VI IE+DQ+ L ++S +P RLE+I DALKVD +R Sbjct: 61 LTRALLALGARRVIAIERDQRCLDALAEVSDHYPGRLEVISGDALKVDVRPLVGDGE-VR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYNI T LL W+S D WPP++ SLTL+FQKEV ERI A S YGRL+VL GW Sbjct: 120 VVANLPYNIATLLLIGWLSTDPWPPWFSSLTLMFQKEVAERIVAAPGSKAYGRLAVLAGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT A + FD++P F P PKVTS+V+H +P P+PC L +L+K+T+ AFG+RRK LRQS Sbjct: 180 RTTARIAFDVAPSAFVPPPKVTSSVVHLVPRSEPLPCALSALEKVTEAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 LK LG + LL G+E RAE + ++ F R+ N + A Sbjct: 240 LKSLGVDTAALLKATGVEETARAEEIDVDGFVRLANTFAQLKSGA 284 >gi|163759131|ref|ZP_02166217.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43] gi|162283535|gb|EDQ33820.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43] Length = 276 Score = 331 bits (849), Expect = 7e-89, Method: Composition-based stats. Identities = 135/272 (49%), Positives = 190/272 (69%), Gaps = 1/272 (0%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L+ I++ Y + P+K +GQNFL DLN+ KIA ++G L+G T+ EIG GPG LT+ Sbjct: 6 DGLPPLRDIVATYGLAPRKALGQNFLFDLNLTGKIARAAGPLEGFTIFEIGPGPGGLTRA 65 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL GA +V+ IE+DQ+ P+L++IS+ +P +LE+++ DAL VD + +I+AN Sbjct: 66 LLEQGAERVVAIERDQRCLPVLEEISAHYPGKLEVVEADALDVDLAALAGGAP-AKIVAN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+GT+LL NW++ + PFW S+TL+FQKEVG+RI A S H+GRL VL GW T A Sbjct: 125 LPYNVGTQLLINWLTVNPKAPFWTSMTLMFQKEVGQRIIAAPGSNHFGRLGVLAGWLTHA 184 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 ++FD+ P F P PKVTS+V+ +P +P+PC L L+++TQ AFG+RRK LRQSLK L Sbjct: 185 DILFDVPPQAFTPPPKVTSSVVQLVPRADPLPCELAKLERVTQAAFGQRRKMLRQSLKPL 244 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 GGE LL GI+ RAE LS+E+FC + + Sbjct: 245 GGEALLESVGIDPARRAETLSVEEFCALARAI 276 >gi|90419497|ref|ZP_01227407.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1] gi|90336434|gb|EAS50175.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1] Length = 279 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 138/278 (49%), Positives = 186/278 (66%), Gaps = 2/278 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +L + + PK+ +GQNFLLDLN+ +IA + L+G T++EIG GPG Sbjct: 1 MSPIDSLPPLRAVLEEHGLDPKRSLGQNFLLDLNLTGRIARQALPLEGATIVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP 118 LT+ LL GA V+V+EKD + P L+ I++ +P RL+I + DAL D + + + Sbjct: 61 LTRALLAEGASHVVVVEKDSRCIPALEAIAAHYPGRLDIRRADALDFDLAEVAHPDGADA 120 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++I+ANLPYN+GT+LL NWI+ WPP W SLTL+FQ+EV ERI A S HYGRL VL Sbjct: 121 LKIVANLPYNVGTQLLLNWIATPQWPPVWSSLTLMFQREVAERIVAVPGSKHYGRLGVLA 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 GWRT+A ++FD+ P F P PKVTS+VI P P P L +L+++T AFG+RRK LR Sbjct: 181 GWRTQAKILFDVPPEAFTPPPKVTSSVIQLRPRAEPEPASLAALERVTATAFGQRRKMLR 240 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 QSLK LGGE LL A I+ RAE LSI +F R+ N L Sbjct: 241 QSLKSLGGEALLVAADIDPQRRAETLSISEFVRLANGL 278 >gi|239831516|ref|ZP_04679845.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301] gi|239823783|gb|EEQ95351.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301] Length = 278 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 136/277 (49%), Positives = 184/277 (66%), Gaps = 2/277 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+++N L+ ++ + ++PKK +GQNFL DLN+ KIA +GSL VIE+G GPG Sbjct: 1 MSIDN-LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGSLQEQPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA V IE+D++ L +I + +P RL II DAL+ DF F R Sbjct: 60 LTRALLAQGAY-VTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+ + WPPF+ S+TL+FQ+EV ERI A ++ HYGRL VL GW Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDTDHYGRLGVLAGW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT + + FD+ P F P PKV S+V+H IP +P+PC +L +ITQ AFG+RRK LRQS Sbjct: 179 RTVSKISFDVPPQAFTPPPKVMSSVVHIIPREDPLPCDANALGQITQAAFGQRRKMLRQS 238 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK +GG LL + GI+ RAE LS+E+F + N Sbjct: 239 LKPVGGAELLAKTGIDGTRRAETLSVEEFVALANAYR 275 >gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571] gi|172047844|sp|A8HVI9|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571] Length = 291 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 137/278 (49%), Positives = 191/278 (68%), Gaps = 3/278 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA SG L+G TV+E+G GPG Sbjct: 1 MSAIDDLPPLREVIRAHGLSAQKSLGQNFLLDLNLTARIARGSGPLEGATVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGARKVI IE+D + L +I++ +P RLEII+ DALKVD + + R Sbjct: 61 LTRALLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEGDALKVDVRPHLDGAE-AR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+GT+LL W+S D WPP++ SLTL+FQ+EV ERI A +S YGRL+VLTGW Sbjct: 120 VVANLPYNVGTQLLVGWLSTDPWPPWFSSLTLMFQREVAERIVAGPDSKAYGRLAVLTGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R +A ++FD++P F P PKVTS+VIH +P P+PC L L+++T+ AFG+RRK LRQS Sbjct: 180 RAQARILFDVAPSAFVPPPKVTSSVIHVVPRAEPVPCALRDLERVTEAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK LG + LL + GI+ RAE + + F + N Sbjct: 240 LKSLGVDPLALLSETGIDETARAEEIDVAGFLALANAF 277 >gi|328544016|ref|YP_004304125.1| ribosomal RNA small subunit methyltransferase A [polymorphum gilvum SL003B-26A1] gi|326413760|gb|ADZ70823.1| Ribosomal RNA small subunit methyltransferase A [Polymorphum gilvum SL003B-26A1] Length = 283 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 130/279 (46%), Positives = 183/279 (65%), Gaps = 3/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++ LD TV+EIG GPG Sbjct: 1 MSRIDDLPPLREVIRAHGLDARKSLGQNFLLDLNLTSRIARAAAPLDACTVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +VI IEKD++ P L +I+ ++P RL +++ DAL++D P++ Sbjct: 61 LTRALLAAGAGRVIAIEKDRRCLPALAEIADRYPGRLTVVEGDALEIDAATLA-AGEPVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NWI+ WPPFW SLTL+FQ+EV ERI A YGRL VL GW Sbjct: 120 IVANLPYNVGTQLLINWITTPGWPPFWSSLTLMFQREVAERIVAAPGDKAYGRLGVLAGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+A ++FDISP F P PKVTS V+ +P + P+PC L++L+++T AFG+RRK LR S Sbjct: 180 RTQARILFDISPQAFTPPPKVTSAVVQLVPRVEPLPCSLKALERVTAAAFGQRRKMLRAS 239 Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK L E L+ +AG+ RAE + I F + Sbjct: 240 LKTLDPQAERLIEEAGLIPTARAEEIDIAGFVALAERFA 278 >gi|254504321|ref|ZP_05116472.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11] gi|222440392|gb|EEE47071.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11] Length = 283 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 139/278 (50%), Positives = 183/278 (65%), Gaps = 3/278 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + KK +GQNFLLDLN+ +IA S+GSL+ T++EIG GPG Sbjct: 1 MAQIDDLPPLRDVIAAHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDHTILEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA+KV+ IEKD + P L +I+ +P RLE+I+ DAL++D +R Sbjct: 61 LTRALLAAGAKKVVAIEKDSRCLPALAEIAYHYPGRLEVIEGDALEIDPVAITG-GGKVR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT+LL NWI+ WPPFW SLTL+FQKEVGERI A S YGRL VL GW Sbjct: 120 IAANLPYNVGTQLLINWITTPDWPPFWSSLTLMFQKEVGERIAAAPGSKAYGRLGVLAGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R ++FDISP F P PKVTS V+H P+ P+PC L SL+K+T AFG+RRK LR S Sbjct: 180 RCNGGILFDISPKAFTPPPKVTSAVVHLTPNPAPLPCNLSSLEKLTAAAFGQRRKMLRAS 239 Query: 241 LKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK L E L+ +AG++ RAE + I F + N Sbjct: 240 LKSLSPDAERLIEKAGLKPTARAEEIDIAGFVNLANTF 277 >gi|114766148|ref|ZP_01445152.1| dimethyladenosine transferase [Pelagibaca bermudensis HTCC2601] gi|114541608|gb|EAU44650.1| dimethyladenosine transferase [Roseovarius sp. HTCC2601] Length = 278 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 179/280 (63%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + KK +GQNFLLDLN+ KIA +G L G+ V+EIG GPG Sbjct: 1 MSAIDGLPPLREVIASHDLSAKKSLGQNFLLDLNLTAKIARQAGDLSGMDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GARKV+ IEKD + P L +I+ +P+RLE+I DAL++D +++ PI Sbjct: 61 LTRGLLAEGARKVLAIEKDTRCLPALAEIAGAYPDRLEVISGDALQID--PLAHLTPPIA 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ + WPPFW++LTL+FQ+EV ERI AQ S YGRL+VL W Sbjct: 119 ICANLPYNVGTELLVRWLTPEDWPPFWQTLTLMFQREVAERIVAQPGSKAYGRLAVLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT+A ++ + P F P PKV+S V+H P P +L+++ AF +RRK LR Sbjct: 179 RTEARIVLSLPPGAFTPPPKVSSAVMHLRALPEPRFPAERAALERVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L E+ L AGI RAE +S+E FC + L Sbjct: 239 ALKGLAPDIEDRLEAAGIAPTERAEQVSLEQFCALARALA 278 >gi|119383648|ref|YP_914704.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222] gi|166221685|sp|A1B0G4|RSMA_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119373415|gb|ABL69008.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222] Length = 282 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 130/280 (46%), Positives = 175/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + KK +GQNFLLDLN+ KIA ++G L G VIE+G GPG Sbjct: 1 MSAIDGLPPLREVIARHDLRAKKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD + P L +I++ +P RLE+I DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W++ WPPFW+SLTL+FQKEV ERI AQ YGRL+VL W Sbjct: 119 IVANLPYNVGTELLIRWLTPAAWPPFWQSLTLMFQKEVAERIVAQPGGKAYGRLAVLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT+A ++ + P F P+PKV S V+H P P L ++ F +RRK LR Sbjct: 179 RTEARIVMTLPPEAFVPAPKVHSAVVHLTALPGPRYPADPAVLNRVVAAGFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E LL QAGI RAE + +E FC + L Sbjct: 239 SLKGLHPEIEALLIQAGIAPTARAEEIGLEQFCALARGLA 278 >gi|114704784|ref|ZP_01437692.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Fulvimarina pelagi HTCC2506] gi|114539569|gb|EAU42689.1| dimethyladenosine transferase (16S rRNA dimethylase) protein [Fulvimarina pelagi HTCC2506] Length = 277 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 140/275 (50%), Positives = 190/275 (69%), Gaps = 1/275 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ ++ L+T+++ + ++P+K +GQNFLLDLN+ KIA + L+ V+E+G GPG Sbjct: 1 MSTIDELPPLRTVIAEHDLVPRKQLGQNFLLDLNLTSKIARQAAPLEDCIVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V+ EKD + P+L+DI+ ++P RLE+ Q DAL +D E ++ Sbjct: 61 LTRALLANGASRVVAAEKDPRCVPVLEDIAKRYPGRLEVRQMDALDLDVESIAE-DRTLK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT+LL NW+S + WPP W+SLTL+FQKEV ERI A +S HYGRL+VL G Sbjct: 120 IVANLPYNVGTQLLVNWLSVEAWPPRWQSLTLMFQKEVAERIVALPSSSHYGRLAVLAGC 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKA ++FDI F P PKVTS V+ P P+P L +L+K+T AFG+RRK LRQS Sbjct: 180 RTKARILFDIPRQAFTPPPKVTSAVVQLTPRDAPLPVSLAALEKVTLTAFGQRRKMLRQS 239 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK LGGE LL+ GI+ RAE LSIE+F I N Sbjct: 240 LKPLGGEALLNAVGIDPQRRAETLSIEEFVAIANA 274 >gi|83952311|ref|ZP_00961043.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM] gi|83837317|gb|EAP76614.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM] Length = 280 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 125/280 (44%), Positives = 184/280 (65%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + ++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSTIDNLPPLRQVINDHDLVARKSLGQNFLLDLNLTAKIARQAGDLSTADVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +I++ +P RLE+I DAL+VD +++ PI Sbjct: 61 LTRGLLAEGARRVLAIEKDSRCLPALAEIAAAYPGRLEVINGDALEVD--PLAHLTPPIH 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERITA+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERITAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A ++ + P F P+PKV+S V+H P P + L+++ +AF +RRK LR Sbjct: 179 RAEARIVMSLPPEAFTPAPKVSSAVVHLRALPEPRFPADPKMLERVVAQAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK + E+ L+ AGIE RAE LS+E+FC + +++ Sbjct: 239 ALKSMAPDIEDRLNAAGIEPTRRAETLSLEEFCALARVMS 278 >gi|154253780|ref|YP_001414604.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1] gi|154157730|gb|ABS64947.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1] Length = 281 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 126/277 (45%), Positives = 180/277 (64%), Gaps = 5/277 (1%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 L+ +++ Y + P+K +GQNFLLDLN+ +IA ++G LDG V+E+G GPG LT+ L Sbjct: 7 PLPPLREVIARYGLAPQKSLGQNFLLDLNLTGRIARAAGVLDGYDVVEVGPGPGGLTRAL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L GAR+VI IE+D++ L++IS+ +P RL I++ DAL+VD + ++SP RI+ANL Sbjct: 67 LDNGARRVIAIERDRRCIAALEEISAAYPGRLVIVEGDALEVDMKSL--VTSPARIVANL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+GT LL W+ + WP +++SLTL+FQ+EV ERI AQ YGRL+VL WR KA Sbjct: 125 PYNVGTPLLVGWLQTEPWPAWFDSLTLMFQREVAERIVAQPGGKAYGRLAVLAQWRAKAQ 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 ++FD+ F P P VTS+V+ IP P+ L+ + AFG+RRK LR SL+ L Sbjct: 185 ILFDVDRRAFTPPPSVTSSVVELIPRAVPLAEANPRVLEAVVAAAFGQRRKMLRSSLRTL 244 Query: 245 GGEN--LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + LL +AGI+ RAE LS+E FC + + Sbjct: 245 TPHSLPLLEKAGIDPTQRAEELSVEQFCALARAFAEK 281 >gi|118588149|ref|ZP_01545559.1| dimethyladenosine transferase [Stappia aggregata IAM 12614] gi|118439771|gb|EAV46402.1| dimethyladenosine transferase [Stappia aggregata IAM 12614] Length = 274 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 140/275 (50%), Positives = 189/275 (68%), Gaps = 3/275 (1%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +++ + + KK +GQNFLLDLN+ +IA S+GSL+ TV+E+G GPG LT+ LL G Sbjct: 1 MRDVIAEHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDCTVLEVGPGPGGLTRALLAAG 60 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++VI IEKD + P L +IS+ +P RLE+I+ DAL++D +RI ANLPYN+ Sbjct: 61 AKRVIAIEKDSRCLPALAEISAHYPGRLEVIEGDALEIDPVALTG-GDKVRIAANLPYNV 119 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT+LL NWI+ WPPFW SLTL+FQKEVGERI+A S YGRL+VL GWR K ++FD Sbjct: 120 GTQLLINWITTPDWPPFWSSLTLMFQKEVGERISASPGSKAYGRLAVLAGWRCKGGILFD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247 ISP F P PKVTS V+H P+ +P+PC L++L+KIT AFG+RRK LR SLK L E Sbjct: 180 ISPKAFTPPPKVTSAVVHLEPNASPLPCDLKALEKITAAAFGQRRKMLRASLKSLSADAE 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L+ +AG++ RAE + I F + N Q + Sbjct: 240 ELVTKAGLKPTARAEEIDIAGFVDLANTFRAAQAV 274 >gi|159043734|ref|YP_001532528.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12] gi|189028806|sp|A8LI73|RSMA_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157911494|gb|ABV92927.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12] Length = 280 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 127/280 (45%), Positives = 173/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ +K+ KK +GQNFLLDLN+ +IA G L G V+E+G GPG Sbjct: 1 MAQIDGLPPLREVIAAHKLSAKKSLGQNFLLDLNLTARIARVPGDLSGADVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GARKV+ IEKD + P L+ I++ +P RLE+I+ DAL+VD + S PI Sbjct: 61 LTRGLLAEGARKVLAIEKDARCLPALQQIAAAYPGRLEVIEGDALEVDATAYL--SPPIH 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW +LTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPPDWPPFWRTLTLMFQREVAERIVAKPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A + + P F P+PKV S V+H P P L ++ AF +RRK LR Sbjct: 179 RAEAEIALTLPPQAFIPAPKVHSAVVHLRARTEPRYPADAAVLSRVVATAFNQRRKMLRA 238 Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L G E+ L GI+ RAE LS+E+FC + + Sbjct: 239 SLKGLTPGIEDHLAAVGIDPTRRAETLSLEEFCALARQIA 278 >gi|163868023|ref|YP_001609227.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476] gi|189028801|sp|A9IRW8|RSMA_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|161017674|emb|CAK01232.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 145/278 (52%), Positives = 194/278 (69%), Gaps = 3/278 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++N L+ ++ Y + K +GQNFL DLN+ KIA +G+++G V+EIG GPG Sbjct: 1 MPIDN-LPPLREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGTIEGKPVLEIGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119 LT+ LL GA V IE+D++ P L +I +PN+L++I +DALK DF K F S Sbjct: 60 LTRALLAKGA-IVTAIERDERCIPALLEIEKHYPNQLKLICNDALKQDFSKLFGSSPEKP 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RIIANLPYNIGT+LL NW+ + WPPF+ES+TL+FQ+EV +RITA+ S HYGRLSVLTG Sbjct: 119 RIIANLPYNIGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSSHYGRLSVLTG 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WRT A + FD+ P F P+PKVTS+V+H IP P+ C + L IT+ AFG+RRK LRQ Sbjct: 179 WRTIAKIAFDVPPQAFIPAPKVTSSVVHIIPRAQPLVCSAQKLSLITKTAFGQRRKMLRQ 238 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK LGGE +L +AGI+ RAE LSI +F + N++T Sbjct: 239 NLKTLGGEIILEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|99080785|ref|YP_612939.1| dimethyladenosine transferase [Ruegeria sp. TM1040] gi|118600897|sp|Q1GI39|RSMA_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|99037065|gb|ABF63677.1| dimethyladenosine transferase [Ruegeria sp. TM1040] Length = 280 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 180/280 (64%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MSAIDNLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GARK++ IEKDQ+ P L+DI++ +P RLE+I DAL++D +++ PIR Sbjct: 61 LTRGLLSEGARKILAIEKDQRCLPALEDIAAAYPGRLEVINGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A + + P F P PKV+S V+H P P L ++ AF +RRK LR Sbjct: 179 RAEARIALSLPPGAFTPPPKVSSAVVHLTALPEPRYPADAAILSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E+ L+ AGI RAE +S+EDFC + L Sbjct: 239 SLKGVSPQIEDHLNAAGIPPTERAEQVSVEDFCALARSLE 278 >gi|259418690|ref|ZP_05742607.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B] gi|259344912|gb|EEW56766.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B] Length = 280 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 129/280 (46%), Positives = 177/280 (63%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MSAIDNLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GARKV+ IEKDQ+ P L +I+ HP RLE+I DALK+D +++ PIR Sbjct: 61 LTRGLLSEGARKVLAIEKDQRCLPALAEIAEAHPGRLEVINGDALKID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPKDWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A + + P F P PKV+S V+H P P L ++ AF +RRK LR Sbjct: 179 RAEAKIALSLPPGAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E+ L+ AGI RAE +S+E FC + L Sbjct: 239 SLKGVSPQIEDHLNAAGIPPTERAEQVSLEGFCALARSLA 278 >gi|254473433|ref|ZP_05086830.1| dimethyladenosine transferase [Pseudovibrio sp. JE062] gi|211957549|gb|EEA92752.1| dimethyladenosine transferase [Pseudovibrio sp. JE062] Length = 279 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 125/281 (44%), Positives = 178/281 (63%), Gaps = 4/281 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + +K +GQNFLLDLN+ +IA S+G L TV+E+G GPG Sbjct: 1 MAQIDDLPPLREVIAEHGLDARKSLGQNFLLDLNLTSRIARSAGDLSDCTVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA+KVI IEKD + P L IS + +LE+I+ DALK + + + PI+ Sbjct: 61 LTRALLAAGAKKVIAIEKDTRCLPALAQISEHYNGKLEVIEGDALKYNPAELAD--GPIK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL W++ + WPPFW SLTL+FQKEVG+RI A+ YGRL VL W Sbjct: 119 IIANLPYNVGTQLLLGWLTTEEWPPFWSSLTLMFQKEVGQRIVAETGDKAYGRLGVLANW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R ++FD++P F P PKVTS V+ P P+ C L++L+++T AFG+RRK LR S Sbjct: 179 RCHTDILFDLNPKAFTPPPKVTSAVVQLHPREKPLDCPLKALERVTAHAFGQRRKMLRAS 238 Query: 241 LKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 LK L E + AG++ RAE + + F + + + Sbjct: 239 LKGLKPNAEARIEAAGLKPTARAEEIDVTGFVALAHAFDKD 279 >gi|27379213|ref|NP_770742.1| dimethyladenosine transferase [Bradyrhizobium japonicum USDA 110] gi|33516930|sp|Q89MU0|RSMA_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27352364|dbj|BAC49367.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum USDA 110] Length = 284 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 124/280 (44%), Positives = 183/280 (65%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++ LD T++EIG GPG Sbjct: 1 MSAIDDLPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGAR+V+ IE D++ P L+DIS+++P RLEI+ DA+ D N + Sbjct: 61 LTRALLALGARRVVAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLN-GESAK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T+LL NW++ + WPP+++ + L+FQ+EVGERI A+++ YGRL VL W Sbjct: 120 IVANLPYNIATQLLINWLTTEPWPPWYDMMVLMFQREVGERIVAREDEEAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDI+P F P PKVTS+V+ +P P+PC + L+++ AFG+RRK LRQS Sbjct: 180 RCETKILFDIAPSAFVPPPKVTSSVVRLVPRAEPLPCDRKMLEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L AG++ RAE + I F + L D Sbjct: 240 LKSLGVDPARLAQAAGVDATRRAETIPISGFVAMARELAD 279 >gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2] gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2] Length = 283 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 127/280 (45%), Positives = 181/280 (64%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ Y + P+K +GQNFL DLN+ +IA ++G LD TVIEIG GPG Sbjct: 1 MSQIDDLPPLREVIRKYDLAPRKSLGQNFLFDLNLTARIARAAGPLDDATVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA++VI +E+D + P L+DI+ +P RLEI+ DA+ D + + R Sbjct: 61 LTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDFDPTTMLD-GARAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W++AD WPP+++ + L+FQ+EV ERI AQ+N YGRL VL W Sbjct: 120 IVANLPYNIATLLLTGWLTADPWPPWFDMMVLMFQREVAERIVAQENDDAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RT+ ++FDI+P F P PKVTS+V+ +P P+ C +L+++ AF +RRK LRQS Sbjct: 180 RTETKILFDIAPGAFVPPPKVTSSVVRLVPRAKPLSCSRRALEQVAAAAFNQRRKMLRQS 239 Query: 241 LKRLGGENLL--HQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L A I+ RAE +SI F + N L++ Sbjct: 240 LKPLGVDPALLTEAARIDPTRRAETVSIAGFVAMANRLSE 279 >gi|254477153|ref|ZP_05090539.1| dimethyladenosine transferase [Ruegeria sp. R11] gi|214031396|gb|EEB72231.1| dimethyladenosine transferase [Ruegeria sp. R11] Length = 282 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 122/280 (43%), Positives = 176/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ ++++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLTDCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GARKV+ +EKD + P L ++++ +P +LE+I+ DAL+V+ +++ PIR Sbjct: 61 LTRGLLAEGARKVLAVEKDSRCIPALAEVAAAYPGKLEVIEGDALEVN--PLTHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ + YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV S V+H P P +L K+ AF +RRK LR Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALEEPRFPADPGTLNKVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E+ L+ AGI RAE +S+E FC + + Sbjct: 239 SLKSVSPDIEDHLNAAGIPPTERAEQVSLEAFCALARSVK 278 >gi|149914652|ref|ZP_01903182.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b] gi|149811445|gb|EDM71280.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b] Length = 279 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 120/281 (42%), Positives = 174/281 (61%), Gaps = 5/281 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + +K +GQNFLLDLN+ KIA ++G L G V+EIG GPG Sbjct: 1 MSAIDTLPPLRDVIAQHGLSARKALGQNFLLDLNLTSKIARAAGDLTGSDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD + P L +I+ +P RL ++ DAL+VD +++ PI+ Sbjct: 61 LTRGLLAEGARHVLAIEKDARCLPALDEIAQAYPGRLTVLNADALQVD--PLAHLTPPIK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+GT LL W++ WPP W+SLTL+FQ+EV ERI A S YGRL++L W Sbjct: 119 VVANLPYNVGTELLIRWLTPADWPPVWDSLTLMFQREVAERIVATPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A ++ + P F P PKV+S V+H P P L+++ +AF +RRK LR Sbjct: 179 RCEARIVMHLPPSAFTPPPKVSSAVVHITALPEPRYPADPVLLERLVAKAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK L E+ L AGI+ RAE + +E FC + L Sbjct: 239 ALKGLAPDLEDRLLAAGIQPTDRAETVGLEQFCALARSLKS 279 >gi|115525299|ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] gi|122295624|sp|Q07LF4|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115519246|gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] Length = 287 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 124/280 (44%), Positives = 176/280 (62%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++G L+ TVIE+G GPG Sbjct: 1 MSTIDDLPPLREVIQRHDLSARKSLGQNFLLDLNLTTRIARAAGPLEDSTVIEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGA++VI IE+D++ L +IS+ +P RL+I+ DA+ D + + Sbjct: 61 LTRALLALGAKRVIAIERDERALGALAEISAHYPGRLDIVCADAMTYDPRPLLG-GARAK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+ D WPP+++ L L+FQ+EV ERI A ++ YGRL VL W Sbjct: 120 IVANLPYNIATPLLIGWLETDPWPPWYDCLVLMFQREVAERIVATEDDEAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + M+FDISP F P PKVTS+V+ IP P PC L+++T AFG+RRK LRQS Sbjct: 180 RAQTKMLFDISPAAFVPPPKVTSSVVRLIPRDEPEPCNRRMLEQVTAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L AG+E RAE + + F + L + Sbjct: 240 LKSLGVDPARLAAAAGVEPTRRAETIPVAGFVAMARELAN 279 >gi|49475334|ref|YP_033375.1| dimethyladenosine transferase [Bartonella henselae str. Houston-1] gi|62900526|sp|Q6G438|RSMA_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49238140|emb|CAF27348.1| Dimethyladenosine transferase [Bartonella henselae str. Houston-1] Length = 276 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 142/274 (51%), Positives = 191/274 (69%), Gaps = 2/274 (0%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + L+ +++ Y + K +GQNFL DLN+ KIA +G+++G VIE+G GPG LT+ Sbjct: 3 IDSLPPLREVINTYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTR 62 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRII 122 LL GA V IE+D++ P L +I +P +L+II +DALK DF K F IS RII Sbjct: 63 ALLAKGA-IVTAIERDERCIPALLEIEKHYPQKLKIICNDALKQDFSKLFEISPEKPRII 121 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYNIGT+LL NW+ A+ WPPF+ES+TL+FQ+EV +RITA+ S HYGRLSVLTGWRT Sbjct: 122 ANLPYNIGTQLLLNWLLAEPWPPFYESMTLMFQREVAQRITAKPQSAHYGRLSVLTGWRT 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 A + FD+ P F P+PK+TS+V+H IP P+ C + L +T+ AFG+RRK LRQ+LK Sbjct: 182 IAKIAFDVPPQAFIPAPKITSSVVHIIPRTQPLTCSAQKLSFVTKTAFGQRRKMLRQNLK 241 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LGGE LL +AGI+ RAE L I +F + N++ Sbjct: 242 TLGGEVLLEKAGIDETRRAETLEISEFVTLANLV 275 >gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] Length = 282 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 123/280 (43%), Positives = 176/280 (62%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ Y + +K +GQNFL DLN+ +IA ++G LD +TVIEIG GPG Sbjct: 1 MSQIDDLPPLREVIRKYDLFARKSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA++VI +E+D++ P L++I+ ++P RLEII DA D R Sbjct: 61 LTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHGDATTFDPTPLLQ-GERAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+S + WPP+++ + L+FQ+EV ERI A +N YGRL VL W Sbjct: 120 IVANLPYNIATLLLTGWLSVEPWPPWFDMMVLMFQREVAERIVATENDEAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDI+P F P PKV S+V+ P P+ C +L+++T AF +RRK LRQS Sbjct: 180 RAETKILFDIAPGAFVPPPKVMSSVVRLAPRAAPLACSRRALEQVTAAAFNQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L AG++ RAE +SI F + N L + Sbjct: 240 LKALGVDPAALAEAAGVDPTRRAETVSIAGFVAMANRLIE 279 >gi|254465027|ref|ZP_05078438.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I] gi|206685935|gb|EDZ46417.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I] Length = 280 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 125/280 (44%), Positives = 173/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L++I+ +P R E+I DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDTRCLPALQEIADAYPGRFEVINGDALEID--PLEHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFWESLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWESLTLMFQREVAERIVAQPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV+S V+H P P L ++ AF +RRK LR Sbjct: 179 RADARIVLSLPPGAFTPPPKVSSAVVHLDALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E L AGI RAE +S+E FC + L Sbjct: 239 SLKGISPDIEAHLTAAGIPPTERAEQVSLEAFCALARELA 278 >gi|294678211|ref|YP_003578826.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003] gi|294477031|gb|ADE86419.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003] Length = 280 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 124/280 (44%), Positives = 179/280 (63%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ ++++ KK +GQNFLLDLN+ KIA ++G L G V+E+G GPG Sbjct: 1 MAAIDGLPPLREVIATHELVAKKALGQNFLLDLNLTAKIARAAGDLTGCDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P L +I++ +P RLE+I DAL VD +++ PIR Sbjct: 61 LTRGLLAEGARRVLAVEKDSRCLPALAEIAAHYPGRLEVINGDALAVDV--LAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQKEV ERI A+ + HYGRL++L W Sbjct: 119 IAANLPYNVGTELLIRWLTPAVWPPFWQSLTLMFQKEVAERIVAKPGTDHYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A ++ + P F P+PKV S V+H P P L+++ F +RRK LR Sbjct: 179 RAEAKIVMVLPPEAFTPAPKVHSAVVHLTALPAPRYPADPAVLERVVAAGFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + + LL +AGI RAE +S+E FC + ++ Sbjct: 239 SLKGVHPRIDALLEEAGIPPTERAERVSLEQFCHLARLVA 278 >gi|310816142|ref|YP_003964106.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25] gi|308754877|gb|ADO42806.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25] Length = 281 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 180/280 (64%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + KK +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MAAIDNLPPLREVIATHGLSAKKALGQNFLLDLNLTAKIARQAGDLSGSDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD++ P L++I+ +P R IQ DAL+VD +++ PIR Sbjct: 61 LTRGLLAEGARRVLSIEKDERCIPALEEIADAYPGRFSYIQGDALQVD--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYNIGT LL W++ WPPFW+SLTL+FQ+EV ERITA+ S HYGRL++L+ W Sbjct: 119 VAANLPYNIGTELLIRWLTPPQWPPFWQSLTLMFQREVAERITAKPGSNHYGRLAILSQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ D+ P F P PKV+S V+H P P L+ L+++T AFG+RRK LR Sbjct: 179 RADARIVLDLPPQAFTPPPKVSSAVVHLTALPAPRFPADLKVLERVTAAAFGQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL+ L E++L I+ RAE + +E FC + + Sbjct: 239 SLRGLAPDIEDILTSVDIKPTERAEQIDLEHFCALARAIA 278 >gi|148255223|ref|YP_001239808.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1] gi|166221648|sp|A5EIA8|RSMA_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146407396|gb|ABQ35902.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1] Length = 286 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 124/283 (43%), Positives = 183/283 (64%), Gaps = 3/283 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ +++ +K +GQNFLLDLN+ +IA ++G L+ TV+EIG GPG Sbjct: 1 MSAIDDLPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGAR VI +E D++ P L+ I+ ++P RLEI+ DA D + S+ + Sbjct: 61 LTRALLALGARHVIAVEHDERAIPALQAIAERYPGRLEIVCTDARTFDVRPYLG-STKAK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+SA+ WPP+++ + L+FQ+EV ERI A++N YGRL VL W Sbjct: 120 IVANLPYNIATHLLIGWLSAEPWPPWYDMMVLMFQREVAERIVARENEEAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQS Sbjct: 180 RCETKILFDISPSAFVPPPKVTSSVVRLVPRTAPEPCDRRALEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LK L + L AG++ RAE + + F + LT+++D Sbjct: 240 LKSLPTDPARLAAAAGVDPTRRAETIPVSGFVAMARELTNSRD 282 >gi|254462138|ref|ZP_05075554.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2083] gi|206678727|gb|EDZ43214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium HTCC2083] Length = 280 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 119/282 (42%), Positives = 179/282 (63%), Gaps = 5/282 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L+ ++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MTTIDPLPPLRDVIERHELSARKSLGQNFLLDLNLTAKIARQAGDLSQCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GARKV+ IEKD + P L +I+ +PNRL +I+ DAL +D +++ PIR Sbjct: 61 LTRGLLSEGARKVLAIEKDARCLPALDEIAQAYPNRLHVIEGDALGLD--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + +NLPYN+GT LL W++ WPP+W+SLTL+FQ+EV +RI A+ S YGRL++L W Sbjct: 119 VASNLPYNVGTELLIRWLTPKQWPPYWQSLTLMFQREVAQRIVAEPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P F P PKV+S V+H P P ++L+++ AF +RRK LR Sbjct: 179 RCDARIVINLPPEAFSPPPKVSSAVVHLTALSEPRFPADFKTLERLVATAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SLK + E+ L AG+++ RAE + +E FC + + + Sbjct: 239 SLKSVSPDIEDHLRAAGLKSTERAEQIPLEGFCALAREVAKS 280 >gi|240850227|ref|YP_002971620.1| dimethyladenosine transferase [Bartonella grahamii as4aup] gi|240267350|gb|ACS50938.1| dimethyladenosine transferase [Bartonella grahamii as4aup] Length = 276 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 141/277 (50%), Positives = 190/277 (68%), Gaps = 3/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++N L+ ++ + K +GQNFL DLN+ KIA +G+++G V+EIG GPG Sbjct: 1 MPIDN-LPPLREVIDICGLQAHKSLGQNFLFDLNLTSKIAHHAGNIEGKPVLEIGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119 LT+ LL GA V IE+D++ P L +I +P +L+II +DALK DF K F S Sbjct: 60 LTRALLAKGA-IVTAIERDERCIPALLEIEKHYPKKLKIICNDALKQDFSKLFETSPEKP 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RIIANLPYNIGT+LL NW+ + WPPF+ES+TL+FQ+EV +RITA+ S HYGRLSVLTG Sbjct: 119 RIIANLPYNIGTQLLLNWLLTEPWPPFYESMTLMFQREVAKRITAKPQSTHYGRLSVLTG 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WRT A + FD+ P F P PKVTS+V+H IP P+ C + L +T+ AFG+RRK LRQ Sbjct: 179 WRTTAKIAFDVPPQAFIPIPKVTSSVVHIIPRTQPLACSAQKLSLVTKTAFGQRRKMLRQ 238 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK LGGE LL +AGI+ RAE LS+ +F + +++ Sbjct: 239 NLKTLGGEVLLEKAGIDGTRRAETLSVSEFVTLAHLV 275 >gi|114768929|ref|ZP_01446555.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255] gi|114549846|gb|EAU52727.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255] Length = 280 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 130/281 (46%), Positives = 176/281 (62%), Gaps = 7/281 (2%) Query: 1 MTMN--NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M++N + L+ I++ Y++ KK +GQNFLLDLN+ KIA +G L TV+EIG GP Sbjct: 1 MSLNTLDGLPPLREIINEYQLSAKKSLGQNFLLDLNLTNKIARMAGDLTNHTVLEIGPGP 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 G LT+ LL GA+KV+ IE+D++ P L I NRLE+ DAL + E + N P Sbjct: 61 GGLTRALLNSGAKKVLAIERDERLIPALNQIKEHFDNRLEVKYTDALNENIEAYLN--GP 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPYNIGT LL W++ WPP+WESLTL+FQKEV +RI A S YGRL++L Sbjct: 119 VKVVANLPYNIGTELLVRWLTPSEWPPYWESLTLMFQKEVAKRIVATPGSKAYGRLALLV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTL 237 WR A ++ +ISP F P PKVTS V+H NP + L+KI AF +RRK L Sbjct: 179 QWRCNAKIVMEISPQAFTPPPKVTSAVVHIERLTNPRFEADGKVLEKIVAAAFNQRRKML 238 Query: 238 RQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 R SLK E++L GI+ RAE +S+E FC + +L Sbjct: 239 RVSLKAFSPIIEDILIDVGIKPTQRAEEISLEQFCALARVL 279 >gi|126739404|ref|ZP_01755097.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6] gi|126719504|gb|EBA16213.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6] Length = 291 Score = 318 bits (815), Expect = 6e-85, Method: Composition-based stats. Identities = 124/280 (44%), Positives = 175/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 11 MSTIDNLPPLREVIETHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 70 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P L +IS+ +P +LE+I DAL+VD +++ P+R Sbjct: 71 LTRGLLAEGARRVLAVEKDARCMPALAEISTAYPGQLEVINGDALEVD--ALAHLTPPVR 128 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 129 IAANLPYNVGTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLALLAQW 188 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV S V+H P P +L ++ AF +RRK LR Sbjct: 189 RADARIVLALPPEAFSPPPKVHSAVVHLTALAEPRYPADAATLSRVIAAAFNQRRKMLRA 248 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E+ L AGI+ RAE +S+E+FC + L Sbjct: 249 SLKSVAPNIEDHLIAAGIKPTERAEQVSLEEFCALARSLK 288 >gi|300023222|ref|YP_003755833.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC 51888] gi|299525043|gb|ADJ23512.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC 51888] Length = 290 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 122/279 (43%), Positives = 177/279 (63%), Gaps = 3/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L+ ++ + + KK +GQNFLLDLN+ +KIA ++G + TV+EIG GPG Sbjct: 4 MTTADGLPPLRDVIERHGLAAKKSLGQNFLLDLNLTRKIARAAGDISKSTVVEIGPGPGG 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA+ VI IE+D + L +I +++P RL + DALK D+ + + P+ Sbjct: 64 LTRALLIEGAKNVIAIERDDRCLAALDEIVARYPGRLRVHAGDALKTDWTELIAGAHPVT 123 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYNI + LL +W+ + WPP+++ + L+FQ+EV ERI A + YGRLSVL + Sbjct: 124 IAANLPYNIASVLLVDWLETEPWPPWFDRMVLMFQREVAERIIAAPRTKAYGRLSVLAQY 183 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 RT+A + ++ P F P PKV+S V+ F P P P C + +L ++T AFG+RRK LR Sbjct: 184 RTEARIAINLPPEAFTPPPKVSSAVVDFRPIAEPEPRCRVSTLARVTAAAFGQRRKMLRS 243 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SLK+L E LL + GI RAE+LS+E+F R+ I Sbjct: 244 SLKQLTPMAELLLREGGIAPERRAEDLSVEEFARLAAIF 282 >gi|182677647|ref|YP_001831793.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633530|gb|ACB94304.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 297 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 122/274 (44%), Positives = 165/274 (60%), Gaps = 4/274 (1%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L+ +++ Y + KK +GQNFL DLN+ +IA ++ ++EIG GPG LT+ Sbjct: 11 DDLPPLREVVATYGLAAKKALGQNFLFDLNLTGRIARAADPSKTALIVEIGPGPGGLTRA 70 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL GA KVI IE+D++ P L +I++ +P RLE++ DAL D P RI AN Sbjct: 71 LLAEGAPKVIAIEQDERCLPALAEIAAHYPGRLEVVAGDALTTDLGLLVASYRPARICAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRTK 183 LPYNIGT LL WI + WPP+++ L L+FQ+EV ERI A YGRL+VL WR + Sbjct: 131 LPYNIGTALLTRWIETEPWPPWFDRLVLMFQREVAERIVATPAQRADYGRLAVLCNWRCE 190 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++FD+SP F P PKVTS V+ +P P+ C E L +TQ AFG+RRK LRQSLK Sbjct: 191 TRILFDVSPSAFTPPPKVTSAVVELVPRAEPLTCDREKLSAVTQAAFGQRRKMLRQSLKS 250 Query: 244 L---GGENLLHQAGIETNLRAENLSIEDFCRITN 274 L G L+ AG+ LRAE + I F + Sbjct: 251 LLGGGTSALIEAAGLAPTLRAEEVDIAGFVALAR 284 >gi|319408315|emb|CBI81968.1| dimethyladenosine transferase [Bartonella schoenbuchensis R1] Length = 276 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 138/277 (49%), Positives = 190/277 (68%), Gaps = 3/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++N L+ +++ Y + K +GQNFL DLN+ KIA+ +G++ G VIE+G GPG Sbjct: 1 MPIDN-LPPLREVINTYGLQANKSLGQNFLFDLNLTSKIAQQAGNIAGKPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119 LT+ LL GA V IE+D++ L DI +P +L++I +DALK +F + F Sbjct: 60 LTRALLAKGA-IVTAIERDERCLQALLDIEKHYPQKLKVICNDALKQNFSEIFEAYPEKP 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 IIANLPYNIGT+LL NWI + WPPF++S+TL+FQ+EV +RITA +SPHYGRLSVL G Sbjct: 119 HIIANLPYNIGTQLLLNWILTEPWPPFYKSMTLMFQREVAKRITATPHSPHYGRLSVLIG 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WR A + FD+SP F P PKVTS+V+H IP P+PC + L +T+ AFG++RK LRQ Sbjct: 179 WRAIAKIAFDVSPKAFTPIPKVTSSVVHIIPRPQPLPCSTQKLSLVTKAAFGQKRKMLRQ 238 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SLK +GGE LL ++GI+ RAE LSI +F + N++ Sbjct: 239 SLKTIGGEMLLEKSGIDGTRRAETLSISEFVSLANLV 275 >gi|83953609|ref|ZP_00962330.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1] gi|83841554|gb|EAP80723.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1] Length = 280 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 118/280 (42%), Positives = 176/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + +K +GQNFLLDLN+ KIA +G + V+EIG GPG Sbjct: 1 MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR+V+ IEKD++ P L +I+ +P+RL +I+ DAL++D +++ PIR Sbjct: 61 LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P F P PKV+S V+H P P + L ++ AF +RRK LR Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPEPRFPADPDVLNRVVAAAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK E+ L AG++ RAE + +E FC + + Sbjct: 239 ALKGTAPDIEDRLRAAGLKPTERAEQVPLEGFCALAREIA 278 >gi|163746453|ref|ZP_02153811.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45] gi|161380338|gb|EDQ04749.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45] Length = 287 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 117/280 (41%), Positives = 173/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ +K +GQNFLLDLN+ KIA +G + V+EIG GPG Sbjct: 8 MSTIDNLPPLREVINTHELAARKSLGQNFLLDLNLTAKIARQAGDMADCDVLEIGPGPGG 67 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD++ P L +++ +P RL +I+ DAL++D +++ PIR Sbjct: 68 LTRGLLAEGARHVLAIEKDRRCLPALAEVAEHYPGRLTVIEGDALEID--PLSHLTPPIR 125 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A S YGRL+VL W Sbjct: 126 VAANLPYNVGTELLVRWLTPPQWPPFWQSLTLMFQREVAERIVATPGSKAYGRLAVLAQW 185 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R+ A ++ + P F P PKV+S+V+H P P L ++ AF +RRK LR Sbjct: 186 RSDARIVMQLPPGAFTPPPKVSSSVVHLTALPEPRYPADPAVLSRVVAMAFNQRRKMLRS 245 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK E+ L AG++ RAE + +E FC + + Sbjct: 246 ALKGAAPDIEDRLIAAGLKPTDRAEQVPLEGFCALAREIA 285 >gi|298291091|ref|YP_003693030.1| dimethyladenosine transferase [Starkeya novella DSM 506] gi|296927602|gb|ADH88411.1| dimethyladenosine transferase [Starkeya novella DSM 506] Length = 283 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 135/277 (48%), Positives = 190/277 (68%), Gaps = 3/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++++ L+ ++ + + K +GQNFLLDLN+ KIA ++G L+G+TVIE+G GPG Sbjct: 1 MSVDD-LPPLREVIREHGLSALKSLGQNFLLDLNLTSKIARTAGKLEGLTVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LG KVI IE+D++ L ++++ +P RLE+++ DAL D+ S+ Sbjct: 60 LTRALLALGTDKVIAIERDRRCIAALAEVAAHYPGRLEVVEGDALAADYAALIPASTRAA 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+++D WPP++ESLTL+FQ+EV ERI A S HYGRL+VLTGW Sbjct: 120 IVANLPYNIATPLLVGWLTSDPWPPWYESLTLMFQREVAERIVAASGSDHYGRLAVLTGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R A + FD+ F P PKVTS+V+H +P P+PC L++L+K+T+ AFG+RRK LRQS Sbjct: 180 RANARIAFDVPASAFVPPPKVTSSVVHIVPREKPLPCELKALEKVTEAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNI 275 LK LG + LL AGIE RAE + +E F + N Sbjct: 240 LKSLGVDAGKLLAAAGIEPTERAERIPVEGFVALANA 276 >gi|83942389|ref|ZP_00954850.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36] gi|83846482|gb|EAP84358.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36] Length = 280 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 118/280 (42%), Positives = 176/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + +K +GQNFLLDLN+ KIA +G + V+EIG GPG Sbjct: 1 MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR+V+ IEKD++ P L +I+ +P+RL +I+ DAL++D +++ PIR Sbjct: 61 LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P F P PKV+S V+H P P + L ++ AF +RRK LR Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPQPRFPADPDVLNRVVAAAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK E+ L AG++ RAE + +E FC + + Sbjct: 239 ALKGTAPDIEDRLLAAGLKPTERAEQVPLEGFCALAREIA 278 >gi|86138688|ref|ZP_01057261.1| dimethyladenosine transferase [Roseobacter sp. MED193] gi|85824748|gb|EAQ44950.1| dimethyladenosine transferase [Roseobacter sp. MED193] Length = 281 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 120/280 (42%), Positives = 173/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ ++++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIDTHQLLARKSLGQNFLLDLNLTSKIARQAGDLSECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P L +I+ +P RL++I DAL +D +++ P+R Sbjct: 61 LTRGLLAEGARRVLAVEKDSRCMPALAEIAEAYPGRLQLINGDALDID--PLEHLTPPVR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ + YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV S V+H P P +L ++ F +RRK LR Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALQEPRFPADAATLSRVIAAGFNQRRKMLRA 238 Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + G E+ L AGI RAE +S+E+FC + + Sbjct: 239 SLKSVTPGIEDHLKAAGIAPTERAEQVSLEEFCALARSIK 278 >gi|255262783|ref|ZP_05342125.1| dimethyladenosine transferase [Thalassiobium sp. R2A62] gi|255105118|gb|EET47792.1| dimethyladenosine transferase [Thalassiobium sp. R2A62] Length = 282 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 121/280 (43%), Positives = 170/280 (60%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L ++ + + KK +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSQIDGLPPLSEVIQTHGLAAKKSLGQNFLLDLNLTAKIARQAGDLSDCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +IS +PNRL +I+ DAL +D +++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDPRCLPALDEISQAYPNRLHVIEGDALDID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFWESLTL+FQ+EV +RI A+ S YGRL++L W Sbjct: 119 VSANLPYNVGTELLVRWLTPRDWPPFWESLTLMFQREVAQRIVAEPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P F P PKV+S V+H P P +L +I F +RRK LR Sbjct: 179 RADARIVINLPPEAFSPPPKVSSAVVHLTALAEPRYPADAATLNRIVAAGFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + + + AG+ RAE +S+E FC + + Sbjct: 239 SLKGVAPNIQGYIEAAGLRPTDRAEQISLEGFCALARQIK 278 >gi|49474096|ref|YP_032138.1| dimethyladenosine transferase [Bartonella quintana str. Toulouse] gi|62900523|sp|Q6G052|RSMA_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49239600|emb|CAF25957.1| Dimethyladenosine transferase [Bartonella quintana str. Toulouse] Length = 276 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 140/277 (50%), Positives = 192/277 (69%), Gaps = 3/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++N L+ ++ Y + K +GQNFL DLN+ KIA +G+++G VIE+G GPG Sbjct: 1 MPIDN-LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119 LT+ LL GA VI IE+D++ P L I +P +L++I +DALK +F K F Sbjct: 60 LTRALLAKGAL-VIAIERDERCIPALLAIEKHYPKKLKLICNDALKQNFSKLFETYPEKP 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RIIANLPYNIGT+LL NW+ + WPPF+ES+TL+FQ+EV +RITA+ S +YGRLSVLTG Sbjct: 119 RIIANLPYNIGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSAYYGRLSVLTG 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WRT A + FD+ P F P+PK+TS+V+H IP + P+ C + L +T+ AFG+RRK LRQ Sbjct: 179 WRTTAKIAFDVPPQAFIPAPKITSSVVHIIPRIQPLTCSAQKLSFVTKTAFGQRRKMLRQ 238 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK LGGE LL +AGI+ RAE LSI +F + N++ Sbjct: 239 NLKTLGGEMLLAKAGIDGTRRAETLSISEFVTLANLV 275 >gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1] gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1] Length = 287 Score = 314 bits (806), Expect = 7e-84, Method: Composition-based stats. Identities = 125/282 (44%), Positives = 185/282 (65%), Gaps = 3/282 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++G LDG+TV+EIG GPG Sbjct: 1 MSAIDDLPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDGVTVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA++VI IE+D++ L++I++ +P RLEI+ DA++ D N R Sbjct: 61 LTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLEIVSGDAMEFDPRPLLN-GERAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+ A+ WPP++E + L+FQ+EV +RI A ++ YGRL+VL W Sbjct: 120 IVANLPYNIATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHQDDDAYGRLAVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + M+FDISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQS Sbjct: 180 RAETQMLFDISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK LG + L AGI+ RAE + + F + N L++++ Sbjct: 240 LKSLGVDPAQLTAAAGIDPARRAETVPVSGFVAMANELSNSR 281 >gi|163735800|ref|ZP_02143229.1| dimethyladenosine transferase [Roseobacter litoralis Och 149] gi|161390886|gb|EDQ15226.1| dimethyladenosine transferase [Roseobacter litoralis Och 149] Length = 280 Score = 314 bits (806), Expect = 7e-84, Method: Composition-based stats. Identities = 124/280 (44%), Positives = 177/280 (63%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L++++ + + +K MGQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MTTIDNLPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +I++ +P RLE++ DAL++D ++ PIR Sbjct: 61 LTRGLLAQGARRVLAIEKDARCLPALAEIAAAYPGRLEVVNGDALEID--PLSALTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ +TWPP+W+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPETWPPYWQSLTLMFQREVAERIVAKPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV+S+V+H P P L K+ AF +RRK LR Sbjct: 179 RADAQIVMQLPPEAFTPPPKVSSSVVHITALPAPRYPADANVLSKVVAMAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK LG E+ L AGI+ RAE +S++ FC + + Sbjct: 239 ALKGLGPDIEDRLQAAGIKPTERAERVSLQGFCALARAVA 278 >gi|254509515|ref|ZP_05121582.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11] gi|221533226|gb|EEE36214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11] Length = 280 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 121/281 (43%), Positives = 174/281 (61%), Gaps = 5/281 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MNTIDTLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GARKV+ +EKD + L DI++ +P RLE+I DAL++D +++ PIR Sbjct: 61 LTRGLLSEGARKVVALEKDTRCIAALNDIAAAYPGRLEVINGDALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A + + P F P PKV+S V+H P P +L ++ AF +RRK LR Sbjct: 179 RADAHIAMSLPPGAFTPPPKVSSAVVHLSALPQPRYPADAATLSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 SL+ + E+ L AGI+ RAE + +E FC + ++ Sbjct: 239 SLRGIAPDIEDRLIAAGIKPTDRAEQIPLESFCGLARMVKS 279 >gi|56697309|ref|YP_167675.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3] gi|62900467|sp|Q5LQN0|RSMA_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56679046|gb|AAV95712.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3] Length = 279 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 121/280 (43%), Positives = 173/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSAIDTLPPLREVIASHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +I++ + RLE+I DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLPALAEIAAAYSGRLEVINGDALEID--PLAHMTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPRDWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A ++ + P F P PKV+S V+H P P L ++ AF +RRK LR Sbjct: 179 RAEARIVMSLPPEAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK E+ L AGI+ RAE + +E FC + L Sbjct: 239 ALKGQAPDIEDRLLAAGIKPTERAEQVPLEAFCALARELA 278 >gi|126725345|ref|ZP_01741187.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150] gi|126704549|gb|EBA03640.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150] Length = 280 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 119/282 (42%), Positives = 174/282 (61%), Gaps = 5/282 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L ++ + + +K +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MAQIDNLPPLSDVIETHGLAARKSLGQNFLLDLNLTSKIARQAGDLRGSDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + L +I+S +PN+L+ I DAL+ + ++ +PI+ Sbjct: 61 LTRGLLAEGARRVLAIEKDTRCIAALDEIASAYPNQLKTINGDALEAN--PLEHLQAPIK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV RI A+ YGRL++L W Sbjct: 119 VVANLPYNVGTELLIRWLTPAEWPPFWDSLTLMFQREVAHRIVAKPGDKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R + ++ ++ P F P+PKV+S V+H P P L ++TQ AFG+RRK LR Sbjct: 179 RAEPRIVMELPPEAFTPAPKVSSAVVHLTALAEPRFPASGPHLSRVTQAAFGQRRKMLRA 238 Query: 240 SLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SLK + + +L GI+ RAE + +E FC + +L N Sbjct: 239 SLKGIFKDPTAVLESVGIDPTARAEVIGLEQFCALARVLKGN 280 >gi|146340299|ref|YP_001205347.1| dimethyladenosine transferase [Bradyrhizobium sp. ORS278] gi|166221649|sp|A4YT90|RSMA_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146193105|emb|CAL77116.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium sp. ORS278] Length = 286 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 125/283 (44%), Positives = 181/283 (63%), Gaps = 3/283 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ +++ +K +GQNFLLDLN+ +IA ++G L+ TV+EIG GPG Sbjct: 1 MSAIDDLPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGAR VI +E D++ P L+ I+ ++P RLEI+ DA D + S+ + Sbjct: 61 LTRALLALGARHVIAVEHDERAIPALRTIADRYPGRLEIVYTDARTFDVRPYLG-STKAK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+SA+ WPP++E + L+FQ+EV ERI A +N YGRL VL W Sbjct: 120 IVANLPYNIATHLLIGWLSAEPWPPWYEMMVLMFQREVAERIVATENEEAYGRLGVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQS Sbjct: 180 RCETKILFDISPSAFVPPPKVTSSVVRLVPRPAPEPCDRRALEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LK L L AGI+ RAE + + F + LT++++ Sbjct: 240 LKSLPADPARLAAAAGIDPTRRAETIPVSGFVAMARELTNSRN 282 >gi|84500985|ref|ZP_00999220.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597] gi|84391052|gb|EAQ03470.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597] Length = 279 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 122/280 (43%), Positives = 174/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + +K +GQNFLLDLN+ KIA +G L G V+EIG GPG Sbjct: 1 MATIDGLPPLREVIATHGLAARKSLGQNFLLDLNLTAKIARQAGDLSGCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +I++ +P RLE++ DAL+VD ++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLPALAEIAAAYPRRLEVVNGDALEVD--PLTRLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W++ D WPP+W+SLTL+FQ+EV ERI A+ YGRL++L W Sbjct: 119 IVANLPYNVGTELLVRWLTPDRWPPYWDSLTLMFQREVAERIVARPGGKAYGRLALLASW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A + + P F P PKV+S V+H P P L+++ AF +RRK LR Sbjct: 179 RAEARITLSLPPEAFTPPPKVSSAVVHLTALPEPRYPADPRVLERVVAMAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L E+ L A I RAE +S+E FC + ++ Sbjct: 239 ALKGLAPDIEDRLRAASIAPTDRAETVSLEQFCALARAVS 278 >gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] Length = 286 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 126/280 (45%), Positives = 182/280 (65%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+L +IA ++G LDG TVIEIG GPG Sbjct: 1 MSGIDDLPPLRDVIKRHDLSARKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL LGA KVI IE+D++ L++I++ +P RLEI+ DA D + + Sbjct: 61 LTRALLALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCADATIYDPRPLLG-GARAK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+S + WPP+++++ L+FQ+EV ERI A+++ YGRL+VL W Sbjct: 120 IVANLPYNIATPLLIGWLSIEPWPPWYDTMVLMFQREVAERIVAREDDEAYGRLAVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDISP F P PKVTS+V+ +P P PC L+++ AFG+RRK LRQS Sbjct: 180 RAETKLLFDISPAAFVPQPKVTSSVVRLVPRETPEPCDRRMLEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L AG++ RAE +++ F + LTD Sbjct: 240 LKPLGVDPARLAAAAGVDPTRRAETIAVSGFVAMARELTD 279 >gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009] gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1] gi|62900541|sp|Q6N5B4|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732615|sp|B3Q9S4|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009] gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1] Length = 287 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 125/284 (44%), Positives = 184/284 (64%), Gaps = 3/284 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++G L+G+TV+EIG GPG Sbjct: 1 MSAIDDLPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA++VI IE+D++ L++I++ +P RL+II DA++ D N R Sbjct: 61 LTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFDPRPLLN-GDRAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+ A+ WPP++E + L+FQ+EV +RI A + YGRL+VL W Sbjct: 120 IVANLPYNIATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHHDDDAYGRLAVLANW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + M+FDISP F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQS Sbjct: 180 RAETQMLFDISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 LK LG + L AGI+ RAE + + F + N L +++ I Sbjct: 240 LKSLGVDPAQLTAAAGIDPARRAETVPVSGFVAMANELANSRAI 283 >gi|319407063|emb|CBI80700.1| dimethyladenosine transferase [Bartonella sp. 1-1C] Length = 276 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 142/276 (51%), Positives = 191/276 (69%), Gaps = 2/276 (0%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + + L+ I++ YK+ K +GQNF+ DLN+ KIA +G+++G V+EIG GPG LT Sbjct: 2 LIDNLPPLRNIINKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLT 61 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121 + LL GA V IE+D++ P L +I +P +L++I +DALK DF K F RI Sbjct: 62 RALLAKGA-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRI 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPYNIGT+LL NW+ WPPF+ES+TL+FQ+EV +RITA SP+YGRLS+LTGWR Sbjct: 121 IANLPYNIGTQLLLNWLLTKAWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWR 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + A + FDI P F P PKVTS+V+H IP L P+ C + L +T+ AFG+RRK LRQSL Sbjct: 181 SIAKIAFDIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSL 240 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K +GGE LL +AGI+ RAE LSI +F + N++T Sbjct: 241 KTIGGETLLEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|149186122|ref|ZP_01864436.1| dimethyladenosine transferase [Erythrobacter sp. SD-21] gi|148830153|gb|EDL48590.1| dimethyladenosine transferase [Erythrobacter sp. SD-21] Length = 273 Score = 312 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 114/271 (42%), Positives = 165/271 (60%), Gaps = 3/271 (1%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + K +GQNFL D +L +IA G+L G V+EIG GPG LT+ LL Sbjct: 5 PPLREVIARHGLSASKALGQNFLFDQQLLDRIAALPGALAGRRVLEIGPGPGGLTRALLK 64 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GA +V IE D++ P L ++ +P +LE+I+ DALK+D + P I++NLPY Sbjct: 65 AGA-EVTAIEMDERCLPALAELGEAYPGKLEVIRGDALKLDHDAIMG-GEPYAILSNLPY 122 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT L W+ + WPP W SLTL+FQ+EV +RI A+ + YGRLSVL WR +A + Sbjct: 123 NVGTALFTRWMGGEAWPPLWTSLTLMFQQEVAQRIVAKSGTSAYGRLSVLAQWRAQAKLA 182 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + F P PKV S ++H P P + L+++T+ +FG+RRK LRQSLK + G Sbjct: 183 MKVHRSAFTPPPKVMSAIVHVEPGAMPEGVSAKVLERLTETSFGQRRKMLRQSLKGVAGA 242 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNILT 277 + L GI++ RAE LSIE+F + LT Sbjct: 243 VDTLETLGIDSQRRAETLSIEEFVALARALT 273 >gi|254488687|ref|ZP_05101892.1| dimethyladenosine transferase [Roseobacter sp. GAI101] gi|214045556|gb|EEB86194.1| dimethyladenosine transferase [Roseobacter sp. GAI101] Length = 280 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 120/280 (42%), Positives = 171/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + +K +GQNFLLDLN+ +IA +G L V+EIG GPG Sbjct: 1 MSTIDSLPPLRDVINTHDLKARKSLGQNFLLDLNLTARIARHAGDLTACDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR V+ IEKD + P L +I+ +P RL +I+ DAL +D ++ PIR Sbjct: 61 LTRALLSEGARHVLAIEKDARCLPALAEIADAYPGRLTVIEGDALDID--PLAHLKPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFWESLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPPDWPPFWESLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P+PKV+S V+H P P L +I AF +RRK LR Sbjct: 179 RADARIVMHLPPEAFTPAPKVSSAVVHLTALPEPRFPADPAILSRIVATAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK + E+ L AG++ RAE + +E FC + + Sbjct: 239 ALKGVAPDIEDRLIAAGLKPTDRAEQIPLEGFCALAREIA 278 >gi|319404051|emb|CBI77639.1| dimethyladenosine transferase [Bartonella rochalimae ATCC BAA-1498] Length = 276 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 142/276 (51%), Positives = 192/276 (69%), Gaps = 2/276 (0%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + + L+ ++S YK+ K +GQNF+ DLN+ KIA +G+++G V+EIG GPG LT Sbjct: 2 LIDNLPPLRNVISKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLT 61 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121 + LL GA V IE+D++ P L +I +P +L++I +DALK DF K F RI Sbjct: 62 RALLAKGA-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRI 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPYNIGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SP+YGRLS+LTGWR Sbjct: 121 IANLPYNIGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATAQSPYYGRLSILTGWR 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + A + FDI P F P PKVTS+V+H IP L P+ C + L +T+ AFG+RRK LRQSL Sbjct: 181 SIAKIAFDIPPRAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSL 240 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K +GGE LL +AGI+ RAE LSI +F + N++T Sbjct: 241 KTIGGETLLEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] Length = 283 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 125/279 (44%), Positives = 183/279 (65%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + ++P+K +GQNFL DLN+ +IA ++G LDG+TV+E+G GPG Sbjct: 1 MS-TDGLPPLREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLDGVTVVEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +VI IE+D + P L +I++ +P RL +++ DAL D P R Sbjct: 60 LTRALLAEGAARVIAIERDPRALPALAEIAAHYPGRLTVVEADALAFDPRPLVG-GGPAR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTG 179 I+ANLPYN+GT LL W++ + WPP+W+SLTL+FQ+EV ERI A ++ +YGRL VL G Sbjct: 119 IVANLPYNVGTPLLTGWLAGEDWPPWWDSLTLMFQREVAERIVADEHDRANYGRLGVLCG 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WR +A ++FD+ P F P PKVTS+V+ +P +P+PC + +L+ IT AFG+RRK LRQ Sbjct: 179 WRAQARILFDVPPSAFVPPPKVTSSVVRLVPRPSPLPCRVGALEAITGAAFGQRRKMLRQ 238 Query: 240 SLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276 SL+ + LL AGI RAE + + F + L Sbjct: 239 SLRAATPDPAPLLAAAGIPETARAEEVPVAGFVAMAQAL 277 >gi|85706337|ref|ZP_01037431.1| dimethyladenosine transferase [Roseovarius sp. 217] gi|85669110|gb|EAQ23977.1| dimethyladenosine transferase [Roseovarius sp. 217] Length = 283 Score = 311 bits (798), Expect = 6e-83, Method: Composition-based stats. Identities = 117/279 (41%), Positives = 168/279 (60%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ L +++ + + +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSPLESLPPLARVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLTTCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD + P L +I+ P RL ++ DAL +D +++ PIR Sbjct: 61 LTRGLLMEGARHVLAIEKDARCLPALHEIAEAAPGRLTVLNADALDLD--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +++NLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A S YGRL++L W Sbjct: 119 VVSNLPYNVGTELLIRWLTPPDWPPFWQSLTLMFQREVAERIVATPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R ++ + P F P PKV+S V+H P P + L+++ AF +RRK LR Sbjct: 179 RATPRIVMHLPPGAFTPPPKVSSAVVHLTALSEPRYPADPKILERVVARAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK E+ L AGI+ RAE +S+E FC + ++ Sbjct: 239 ALKGAAPDIEDRLLAAGIQPTDRAETVSLEQFCALARVM 277 >gi|84516318|ref|ZP_01003678.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53] gi|84510014|gb|EAQ06471.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53] Length = 281 Score = 311 bits (797), Expect = 8e-83, Method: Composition-based stats. Identities = 122/280 (43%), Positives = 174/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ Y + PKK +GQNFLLDLN+ +IA +G L G V+EIG GPG Sbjct: 1 MSGIDDLPPLREVIARYDLAPKKSLGQNFLLDLNLTARIARLAGDLAGADVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +I+++ P RL++I+ DAL +D ++ +PI+ Sbjct: 61 LTRGLLASGARRVLAIEKDPRCLPALAEIAARFPGRLQVIEGDALAIDPLEYLQ--APIK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPQVWPPFWDSLTLMFQREVAERIVAQPGGKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ ++ P VF P PKV S V+H P P L + AF +RRK LR Sbjct: 179 RADAKIVMNLPPEVFSPPPKVHSAVVHLTALPAPRYPADPAVLNMVVAAAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK + E+ L + GI+ RAE + +E FC + L Sbjct: 239 ALKSVSPAIEDHLQEVGIKPTERAEQVGLEAFCALARSLK 278 >gi|163739709|ref|ZP_02147117.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107] gi|163743158|ref|ZP_02150540.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10] gi|161383575|gb|EDQ07962.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10] gi|161386939|gb|EDQ11300.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107] Length = 281 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 122/280 (43%), Positives = 172/280 (61%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ ++++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P L +IS +P RL++I+ DAL+V+ +++ PIR Sbjct: 61 LTRGLLAEGARRVLAVEKDSRCIPALAEISDAYPGRLQVIEGDALEVN--PLTHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI A S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAVPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV S V+H P P +L K+ AF +RRK LR Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLKALEAPRYPADAGTLNKVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E+ L+ GI RAE + +E FC + L Sbjct: 239 SLKSVSPDIEDHLNAVGIPPTERAEQVGLEAFCALARSLK 278 >gi|118600872|sp|Q28RD6|RSMA_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 289 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 118/281 (41%), Positives = 177/281 (62%), Gaps = 5/281 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + +K +GQNFLLDLN+ KIA +G L + V+E+G GPG Sbjct: 1 MVAIDGLPPLRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P+L +I + +P RL+++ DAL++D+ ++ +P + Sbjct: 61 LTRGLLAEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWA--ADLQAPRK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W++ +WPP WESLTL+FQ+EV ERI AQ S YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R ++ + P F P PKV S V+HF P P L ++ AFG+RRK LR Sbjct: 179 RADPRIVMGLPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK L E+ L AG++ RAE + +E FC + ++ D Sbjct: 239 ALKGLAPDIEDRLVAAGLKPTDRAEQVPLEGFCALARVMED 279 >gi|85710400|ref|ZP_01041464.1| dimethyladenosine transferase [Erythrobacter sp. NAP1] gi|85687578|gb|EAQ27583.1| dimethyladenosine transferase [Erythrobacter sp. NAP1] Length = 275 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 112/270 (41%), Positives = 160/270 (59%), Gaps = 3/270 (1%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ ++ + + K +GQNFLLD +L +IA G L G V+E+G GPG LT+ LL Sbjct: 5 PPIRETIAKHGLSASKALGQNFLLDEQLLDRIAALPGDLSGARVLEVGPGPGGLTRALLR 64 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR V IE D++ P L+++S P +L +I+ DA+K+D + P +++NLPY Sbjct: 65 AGAR-VTAIEMDRRCLPALEELSEAFPGQLTVIEGDAMKLDHGAIMD-GEPFHVLSNLPY 122 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT L W+S WPP W SLTL+FQ+EV ERI AQ YGRL+VL WR KA + Sbjct: 123 NVGTALFVKWLSGQDWPPQWLSLTLMFQREVAERIVAQPGGSAYGRLAVLAQWRAKAKLA 182 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246 + F P PKV S ++H P P +L+++T+ AFG+RRK LRQSLK + G Sbjct: 183 MKVHRSAFTPPPKVMSAIVHVTPAEAPADVSSRTLERLTEAAFGQRRKMLRQSLKSVPGA 242 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L GIE RAE +S+ +F + + Sbjct: 243 LDALQSVGIEETRRAETVSVAEFVALAKAV 272 >gi|260433483|ref|ZP_05787454.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis ITI-1157] gi|260417311|gb|EEX10570.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis ITI-1157] Length = 280 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 125/280 (44%), Positives = 176/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + L+ +++ +++ +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MTAIDTLPPLREVIARHQLSARKSLGQNFLLDLNLTAKIARQAGDLTQCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GARKV+ +EKD + L++I++ +P RLEII DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARKVVAVEKDTRCIAALEEIAAAYPGRLEIINGDALEID--PLEHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +A + + P F P PKV+S V+H P P +L ++ AF +RRK LR Sbjct: 179 RAQAQIAMSLPPGAFTPPPKVSSAVVHLTALPEPRFPAEAGTLSRVVAAAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L E+ L AGI+ RAE +S+E FC + L Sbjct: 239 ALKGLAPDIEDRLTAAGIKPTERAEQVSLEAFCALARELR 278 >gi|146277163|ref|YP_001167322.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025] gi|166221694|sp|A4WRK3|RSMA_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|145555404|gb|ABP70017.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025] Length = 278 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 129/280 (46%), Positives = 175/280 (62%), Gaps = 6/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ KIA +G L G V+E+G GPG Sbjct: 1 MAAIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLKGSDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W+S+ WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLTRWLSSG-WPPFWESLTLMFQKEVAERIVARPGSKAYGRLALLSQW 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT+ ++ + P F P P + S V+HF P P L ++T AF +RRK LR Sbjct: 178 RTEPKIVLTLPPEAFTPPPAIHSAVVHFTRLAGPRYPADAAVLSRVTAMAFNQRRKMLRS 237 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E +L AGIE RAE LS+E FC + + Sbjct: 238 SLKGLAPDIETVLRDAGIEPTQRAEELSLEAFCALARRVA 277 >gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] Length = 287 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 125/280 (44%), Positives = 176/280 (62%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+M + L+ ++ + + +K +GQNFLLDLN+ +IA ++G L TV+EIG GPG Sbjct: 1 MSMIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTSRIARAAGPLQDATVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL +GA+ VI IE+D++ L++IS ++P RL II DA D + + Sbjct: 61 LTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDFDPRPLLGTTR-AK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+S + WPP+++ + L+FQ+EV ERI A++N YGRL VL+ W Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDVMVLMFQREVAERIVARENEDAYGRLGVLSNW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDISP F P P+VTS+V+ IP NP PC SL+++ AFG RRK LRQS Sbjct: 180 RAETKILFDISPAAFVPQPQVTSSVVRLIPRYNPEPCDRRSLEQVAAAAFGHRRKMLRQS 239 Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L +L AGI+ RAE +SI F + L Sbjct: 240 LKSLPADPASLAAAAGIDPTRRAETVSISGFAAMARELAS 279 >gi|89070361|ref|ZP_01157668.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516] gi|89044008|gb|EAR50183.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516] Length = 281 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 122/280 (43%), Positives = 167/280 (59%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + KK +GQNFLLDLN+ KIA ++G L V+EIG GPG Sbjct: 1 MAGIDDLPPLREVIATHGLSAKKALGQNFLLDLNLTAKIARAAGDLTAADVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD + P L +I++ +P RL +++ DAL D +++ P R Sbjct: 61 LTRGLLASGARHVVAIEKDPRCLPALAEIAAAYPGRLTVLEGDALATDAT--VHLTPPYR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ +WPP WESLTL+FQKEV +RI A+ S YGRL++L W Sbjct: 119 IAANLPYNVGTELLVRWLTPPSWPPAWESLTLMFQKEVAQRIVARPGSKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV+S V+ P P +L +IT AF +RRK LR Sbjct: 179 RADAQIVMSLPPGAFTPPPKVSSAVVRLDALPQPRYPADAATLSRITATAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E L GI RAE + +E FC + L Sbjct: 239 SLKGLAPDIERHLEAVGIAPTDRAEQIDLERFCALARRLA 278 >gi|89054300|ref|YP_509751.1| dimethyladenosine transferase [Jannaschia sp. CCS1] gi|88863849|gb|ABD54726.1| dimethyladenosine transferase [Jannaschia sp. CCS1] Length = 305 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 118/281 (41%), Positives = 177/281 (62%), Gaps = 5/281 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + +K +GQNFLLDLN+ KIA +G L + V+E+G GPG Sbjct: 17 MVAIDGLPPLRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGG 76 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P+L +I + +P RL+++ DAL++D+ ++ +P + Sbjct: 77 LTRGLLAEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWA--ADLQAPRK 134 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W++ +WPP WESLTL+FQ+EV ERI AQ S YGRL++L+ W Sbjct: 135 IVANLPYNVGTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQW 194 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R ++ + P F P PKV S V+HF P P L ++ AFG+RRK LR Sbjct: 195 RADPRIVMGLPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRA 254 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK L E+ L AG++ RAE + +E FC + ++ D Sbjct: 255 ALKGLAPDIEDRLVAAGLKPTDRAEQVPLEGFCALARVMED 295 >gi|84684875|ref|ZP_01012775.1| dimethyladenosine transferase [Maritimibacter alkaliphilus HTCC2654] gi|84667210|gb|EAQ13680.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2654] Length = 280 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 124/279 (44%), Positives = 176/279 (63%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + ++ KK +GQNFLLDLN+ KIA +G L V+E+G GPG Sbjct: 1 MSAIDGLPPLREVIATHGLVAKKSLGQNFLLDLNLTAKIARQAGDLSACDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + L +IS +P RLE++ DAL++D +++ PIR Sbjct: 61 LTRGLLAEGARRVLAVEKDARAMSALAEISEAYPGRLEVLNADALEID--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W++ TWPP W SLTL+FQKEV ERI A+ S YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLTRWLTPPTWPPAWSSLTLMFQKEVAERIVAKPKSKAYGRLAILSQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT A ++ ++ P F P PK+ S V+H P P +L+++T AF +RRK LR Sbjct: 179 RTDARIVMELPPEAFTPPPKIRSAVVHLTALPEPRYPANAATLQRVTATAFQQRRKMLRA 238 Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 SLK L G E LL I+ RAE + +E FC + L Sbjct: 239 SLKGLAPGIEALLESVDIKPTARAEEIDLEHFCALARAL 277 >gi|332558339|ref|ZP_08412661.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rhodobacter sphaeroides WS8N] gi|332276051|gb|EGJ21366.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rhodobacter sphaeroides WS8N] Length = 278 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ KIA +G L V+E+G GPG Sbjct: 1 MASIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239 RT ++ + P F P P + S V+HF P P + L ++T AF +RRK LR Sbjct: 178 RTDPKIVLTLPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E +L +AGIE RAE + +E FC + L Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|77463462|ref|YP_352966.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1] gi|119365057|sp|Q3J2B9|RSMA_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77387880|gb|ABA79065.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1] Length = 278 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ KIA +G L V+E+G GPG Sbjct: 1 MASIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239 RT ++ + P F P P + S V+HF P P + L ++T AF +RRK LR Sbjct: 178 RTDPKIVLTLPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E +L +AGIE RAE + +E FC + L Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|221639320|ref|YP_002525582.1| dimethyladenosine transferase [Rhodobacter sphaeroides KD131] gi|254807881|sp|B9KST5|RSMA_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221160101|gb|ACM01081.1| Dimethyladenosine transferase [Rhodobacter sphaeroides KD131] Length = 278 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 128/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + KK +GQNFLLDLN+ KIA +G L V+E+G GPG Sbjct: 1 MASIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLA--ARLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239 RT ++ + P F P P + S V+HF P P + L ++T AF +RRK LR Sbjct: 178 RTDPKIVLTLPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E +L +AGIE RAE + +E FC + L Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|296282381|ref|ZP_06860379.1| dimethyladenosine transferase [Citromicrobium bathyomarinum JL354] Length = 274 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 113/278 (40%), Positives = 159/278 (57%), Gaps = 6/278 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT L+ +++ + + K +GQNFL D +L +IA G L G V+E+G GPG Sbjct: 1 MT---DLPPLREVIAAHGLSASKALGQNFLFDEQLLARIAAVPGDLSGRNVLEVGPGPGG 57 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA KV IE D++ P L ++ P +L +I+ DALK+D + F+ P Sbjct: 58 LTRALLRAGA-KVTAIEMDRRCLPALAELGDAFPGQLTVIEGDALKIDHDAIFD-GEPYA 115 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I++NLPYN+GT L W+ + WPP W SLTL+FQ+EV +RI AQ YGRL+VL W Sbjct: 116 ILSNLPYNVGTALFTRWMGGEAWPPNWTSLTLMFQQEVAQRIVAQPGGSAYGRLAVLAQW 175 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R A + + F P PKV S ++H P P L+++T AFG+RRK LRQS Sbjct: 176 RGTAKLAMKVHRSAFTPPPKVMSAIVHVTPAAMPDGVSAAKLEQVTAAAFGQRRKMLRQS 235 Query: 241 LKRL-GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK + G + L GI+ RAE L + +F + L+ Sbjct: 236 LKGVPGALDALETLGIDPQRRAETLDVGEFVVLARALS 273 >gi|260576766|ref|ZP_05844751.1| dimethyladenosine transferase [Rhodobacter sp. SW2] gi|259021018|gb|EEW24329.1| dimethyladenosine transferase [Rhodobacter sp. SW2] Length = 280 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 124/280 (44%), Positives = 177/280 (63%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + ++ KK +GQNFLLDLN+ +IA ++G L G V+E+G GPG Sbjct: 1 MAAIDGLPPLRAVIAAHDLVAKKQLGQNFLLDLNLTARIARAAGDLSGCDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ +EKD + P L +I++ +P RLE++Q DAL +D ++ PI+ Sbjct: 61 LTRGLLAEGARRVLAVEKDARCLPALAEIAAAYPGRLEVMQGDALALDVA--AHLVPPIK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W++ WPPFW+SLTL+FQKEV ERI A+ YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLIRWLTPAHWPPFWDSLTLMFQKEVAERIVAKPGPKAYGRLALLSQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQ 239 R ++ + P F P+PKV S V+HF P E+ L ++T AF +RRK LR Sbjct: 179 RADPKIVLTLPPEAFTPAPKVHSAVVHFRRLDAPRFAADEAVLGRVTAMAFNQRRKMLRS 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E L AGIE RAE +S+E FC + + Sbjct: 239 SLKALAPDIEVRLRAAGIEPTARAEEISLEGFCALAREVA 278 >gi|170746986|ref|YP_001753246.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM 2831] gi|226732597|sp|B1LVB8|RSMA_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170653508|gb|ACB22563.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM 2831] Length = 292 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 124/283 (43%), Positives = 180/283 (63%), Gaps = 4/283 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + PKK +GQNFL DLN+ +IA ++G L G+TV+E+G GPG Sbjct: 1 MSAGDGLPPLREVVARHGLEPKKALGQNFLYDLNLTGRIARAAGPLAGVTVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V+ IE+D + P L +I++ +P RLE++ DAL D +P R Sbjct: 61 LTRALLAEGAARVVAIERDPRALPALAEIAAHYPGRLEVVDADALAFDPRPLVG-DAPAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTG 179 I+ANLPYN+GT LL W+ + WPP+W+ L+FQ+EV ERI A YGRL VL G Sbjct: 120 IVANLPYNVGTALLTGWLDGEAWPPWWDQAVLMFQREVAERIVAGPEERADYGRLGVLCG 179 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WRT+A ++FD+SP F P PKVTS+V+ +P P+PC +L+ +T+ AFG+RRK LRQ Sbjct: 180 WRTEAEILFDVSPSAFVPPPKVTSSVVRLVPRAQPLPCRAGALEAVTRAAFGQRRKMLRQ 239 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 SLK L +LL AG+ RAE + + F + N ++ Sbjct: 240 SLKALTPAAGDLLAAAGLSETARAEEIPVAGFVDLANRWDAHR 282 >gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] Length = 287 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 124/283 (43%), Positives = 183/283 (64%), Gaps = 3/283 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++G LD +TV+EIG GPG Sbjct: 1 MSAIDGLPPLRDVIKRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+VI IE+D++ L++I++ +P RLEI+ DA++ D + R Sbjct: 61 LTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEFDPRPLLG-GARAR 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+ A+ WPP+++ + L+FQ+EV +RI A ++ YGRL+VL+ W Sbjct: 120 IVANLPYNIATPLLIGWLCAEPWPPWYDMMVLMFQREVAQRIVACEDDDAYGRLAVLSNW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R M+FDI+P F P PKVTS+V+ +P P PC +L+++ AFG+RRK LRQS Sbjct: 180 RCDTGMLFDIAPSAFVPQPKVTSSVVRLVPRSAPEPCNRAALEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LK LG + L AGI+ RAE + + F + N L D +D Sbjct: 240 LKALGVDPARLAAAAGIDPTRRAETVPVSGFVAMANELIDIRD 282 >gi|332185231|ref|ZP_08386980.1| dimethyladenosine transferase [Sphingomonas sp. S17] gi|332014955|gb|EGI57011.1| dimethyladenosine transferase [Sphingomonas sp. S17] Length = 274 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 115/277 (41%), Positives = 160/277 (57%), Gaps = 5/277 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M L+ +++ + + K +GQNFL D +L +IA G L V+EIG GPG Sbjct: 1 MDPITPLPPLRDVIARHGLSASKSLGQNFLFDGQLLARIAAIPGDLTDQEVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL G R V IE+D++ P L ++S P RL +I+ DAL+V+ + F Sbjct: 61 LTRALLMAGGR-VTAIERDRRCIPALAELSEAFPGRLRVIEGDALRVNAPELFEGKP--H 117 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I++NLPYN+GT LL W+S W P+W+S TL+FQKEV ERI A + YGRL+VLT W Sbjct: 118 IVSNLPYNVGTPLLVGWLSGA-WLPWWQSCTLMFQKEVAERIVAAADQSAYGRLAVLTQW 176 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R++A + + F P PKV S V+H P P +L+++T AFG+RRK LRQS Sbjct: 177 RSQARIAMPVHRSAFTPPPKVMSAVVHITPAPAPEGVTFRTLERLTAAAFGQRRKMLRQS 236 Query: 241 LKRL-GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK + G L GI+ RAE LS+ +F + L Sbjct: 237 LKPIPGAVEALESIGIDPARRAETLSVAEFVALARAL 273 >gi|254437873|ref|ZP_05051367.1| dimethyladenosine transferase [Octadecabacter antarcticus 307] gi|198253319|gb|EDY77633.1| dimethyladenosine transferase [Octadecabacter antarcticus 307] Length = 279 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 125/280 (44%), Positives = 173/280 (61%), Gaps = 6/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT+ + +LK ++ + + +K +GQNFLLDLN+ KIA SG + V+EIG GPG Sbjct: 1 MTI-DSLPTLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDVLEIGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR V+ IEKD + P L +I S +P+RL ++ DAL D +++ PIR Sbjct: 60 LTRGLLSEGARHVLAIEKDDRCLPALAEIQSAYPDRLTVLCGDAL--DINPLDHLTPPIR 117 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYNIGT LL W++ WPP+W+SLTL+FQ+EV +RITA S YGRL++L W Sbjct: 118 VAANLPYNIGTELLIRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQW 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT A ++ ++ P F P PKV+S V+H P P L+ IT AF +RRK LR Sbjct: 178 RTDAQIVMNLPPEAFSPPPKVSSAVVHLTALAKPRFPADANMLQHITATAFNQRRKMLRS 237 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E+ L A I+ RAE + ++ FC + L Sbjct: 238 SLKGLSPDIEDHLIAADIKPTDRAEQIDVQRFCALARSLK 277 >gi|87198908|ref|YP_496165.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM 12444] gi|119365043|sp|Q2G9Z2|RSMA_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|87134589|gb|ABD25331.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM 12444] Length = 273 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 120/278 (43%), Positives = 162/278 (58%), Gaps = 7/278 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT L+ +++ + + K +GQNFL D +L +IA G L G V+E+G GPG Sbjct: 1 MT---DLPPLRDVVNRHGLYATKALGQNFLFDEQLLDRIARVPGKLKGENVLEVGPGPGG 57 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA KV IE D++ P L +++ P +L +I+ DA K+ E F+ P Sbjct: 58 LTRALLRAGA-KVTAIEMDKRCLPALAELADAFPGQLTVIEGDATKIAPETLFD--GPWH 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT+L W+S WPP W+SLTL+FQ EV ERI AQ + YGRL+VL W Sbjct: 115 VAANLPYNVGTQLFTGWLSGQDWPPQWKSLTLMFQLEVAERIVAQPGTDAYGRLAVLAQW 174 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + + F P PKV S +IH P P L+++T+ AFG+RRK LRQS Sbjct: 175 RATPRIATRVHRSAFTPPPKVMSAIIHVEPAAMPEGVSARMLERVTEAAFGQRRKMLRQS 234 Query: 241 LKRL-GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK L G + L GI+ RAE LS+EDF I +LT Sbjct: 235 LKGLPGALDALETLGIDPQRRAETLSVEDFVAIARLLT 272 >gi|319898726|ref|YP_004158819.1| dimethyladenosine transferase [Bartonella clarridgeiae 73] gi|319402690|emb|CBI76236.1| dimethyladenosine transferase [Bartonella clarridgeiae 73] Length = 276 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 137/276 (49%), Positives = 190/276 (68%), Gaps = 2/276 (0%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + + L+ +++ +K+ K +GQNF+ DLN+ KIA +G+++G ++EIG GPG LT Sbjct: 2 LIDNLPPLRNVINTHKLQANKSLGQNFIFDLNLTTKIAHQAGNIEGKPILEIGPGPGGLT 61 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121 + LL GA V IE+D++ P L +I +P +L++I +DALK DF K F RI Sbjct: 62 RALLAKGA-IVTAIERDERCMPALLEIEKHYPQKLKLIFNDALKQDFSKLFEAYPEKPRI 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPYNIGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SP+Y RLS+LTGWR Sbjct: 121 IANLPYNIGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYSRLSILTGWR 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + A + FDI P F P PKVTS+V+H IP L P+ C + L +T+ AFG+RRK LRQS Sbjct: 181 SIAKIAFDIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSF 240 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K +GGE LL +AGI+ RAE LSI +F + N++T Sbjct: 241 KTIGGETLLEKAGIDGTRRAETLSISEFVTLANLIT 276 >gi|319405488|emb|CBI79107.1| dimethyladenosine transferase [Bartonella sp. AR 15-3] Length = 276 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 139/276 (50%), Positives = 192/276 (69%), Gaps = 2/276 (0%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + + L+ +++ YK+ K +GQNF+L+LN+ KIA +G+++G V+EIG GPG LT Sbjct: 2 LIDNLPPLRNVINKYKLQANKSLGQNFILNLNLTTKIAHQAGNIEGKPVLEIGPGPGGLT 61 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121 + LL GA V IE+D++ P L +I +P +L++I +DALK DF K F RI Sbjct: 62 RALLAKGA-IVTAIERDERCMPALLEIKEHYPQKLKLIFNDALKEDFSKLFEAYPEKPRI 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPYNIGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SP+YGRLS+LTGWR Sbjct: 121 IANLPYNIGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWR 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + A + FDI P F P PKVTS+V+H IP P+ C + L +T+ AFG+RRK LRQSL Sbjct: 181 SIAKIAFDIPPQAFIPEPKVTSSVVHIIPRSQPLACSTKKLSLVTKIAFGQRRKMLRQSL 240 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K +GG+ LL +AGI+ RAE LSI +F + N++T Sbjct: 241 KTIGGKTLLEKAGIDGTRRAETLSIFEFVTLANLIT 276 >gi|110680311|ref|YP_683318.1| dimethyladenosine transferase [Roseobacter denitrificans OCh 114] gi|118600895|sp|Q164G1|RSMA_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|109456427|gb|ABG32632.1| dimethyladenosine transferase, putative [Roseobacter denitrificans OCh 114] Length = 280 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 123/280 (43%), Positives = 174/280 (62%), Gaps = 5/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L++++ + + +K MGQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MSTIDHLPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L +I++ +P RLE++ DAL++D ++ PIR Sbjct: 61 LTRGLLAQGARRVLAIEKDARCLPALAEIAAVYPGRLEVMNGDALEID--PLSALTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYN+GT LL W++ WPP+W+SLTL+FQ+EV ERI A+ S YGRL++L W Sbjct: 119 VAANLPYNVGTELLVRWLTPQIWPPYWQSLTLMFQREVAERIVARPGSKAYGRLAILAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R A ++ + P F P PKV+S+V+ P P L K+ AF +RRK LR Sbjct: 179 RADARIVMQLPPDAFTPPPKVSSSVVQITALPAPRYPADPYVLSKVVAMAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK LG E+ L AGIE RAE +S+E FC + + Sbjct: 239 ALKGLGPDIEDRLLAAGIEPTERAERVSLEGFCALARAVA 278 >gi|288958701|ref|YP_003449042.1| dimethyladenosine transferase [Azospirillum sp. B510] gi|288911009|dbj|BAI72498.1| dimethyladenosine transferase [Azospirillum sp. B510] Length = 291 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 120/277 (43%), Positives = 167/277 (60%), Gaps = 6/277 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + +K +GQNFLLDLN+ +IA S+ G T IE+G GPG LT+ LL Sbjct: 9 PPLRDVIARFGLEARKALGQNFLLDLNLTGRIARSANLPAGTTAIEVGPGPGGLTRALLA 68 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A KVI IE+D++F L+D+ RL I++ DAL VD E+ +P I+ANLPY Sbjct: 69 TNAVKVIAIERDRRFIEALQDVIEAAQGRLSIVEADALTVDPEELA--PAPRAIVANLPY 126 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ T LL W++ + SLTL+FQKEV +R+ A+ S YGRLSV+T WR+ A ++ Sbjct: 127 NVATPLLLGWLAR---IDAYVSLTLMFQKEVADRLVAKPGSKAYGRLSVITQWRSDARVL 183 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-G 246 F++ P F P PKV STV+H P NP P +L+++T AFG+RRK LRQSLK LG Sbjct: 184 FNLPPRAFTPPPKVESTVVHLTPRANPEPADWRALEQVTAAAFGQRRKMLRQSLKSLGNA 243 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 E LL + GI RAE + + F + A Sbjct: 244 EALLEETGIAPTARAEEIDVAGFAALARAFRSWTPAA 280 >gi|254452280|ref|ZP_05065717.1| dimethyladenosine transferase [Octadecabacter antarcticus 238] gi|198266686|gb|EDY90956.1| dimethyladenosine transferase [Octadecabacter antarcticus 238] Length = 279 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 124/280 (44%), Positives = 172/280 (61%), Gaps = 6/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT+ + +LK ++ + + +K +GQNFLLDLN+ KIA SG + ++EIG GPG Sbjct: 1 MTI-DSLPTLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDILEIGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR ++ IEKD + P L DI + +P+RL ++ DAL D +++ PIR Sbjct: 60 LTRGLLAEGARHILAIEKDDRCLPALADIQAAYPDRLTVLCGDAL--DINPLDHLTPPIR 117 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + ANLPYNIGT LL W++ WPP+W+SLTL+FQ+EV +RITA S YGRL++L W Sbjct: 118 VAANLPYNIGTELLVRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQW 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT A ++ ++ P F P PKV+S V+H P P L+ IT AF +RRK LR Sbjct: 178 RTDAQIVMNLPPEAFSPPPKVSSAVVHLTALAEPRFPADANMLQHITATAFNQRRKMLRS 237 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E+ L A I+ RAE + +E FC + L Sbjct: 238 SLKGLSPDIEDHLIAANIKPTDRAEQIDVERFCALARSLK 277 >gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46] gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46] Length = 285 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 123/276 (44%), Positives = 181/276 (65%), Gaps = 4/276 (1%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L+ ++ + ++P+K +GQNFL DLN+ +IA ++G L G+TV+E+G GPG LT+ Sbjct: 9 DGLPPLREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLAGVTVVEVGPGPGGLTRA 68 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL GA +V+ IE+D++ P L +I++ +P RL ++Q DAL D P RI+AN Sbjct: 69 LLAEGAARVVAIERDERALPALAEIAAHYPGRLTVVQADALAFDPRPLVGAG-PARIVAN 127 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRTK 183 LPYN+GT LL W++A+ WPP+++SLTL+FQ+EV ERI A + +YGRL VL GWRT+ Sbjct: 128 LPYNVGTALLTGWLAAEAWPPWFDSLTLMFQREVAERIVADERDRANYGRLGVLCGWRTQ 187 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 A ++FD+ P F P PKVTS+V+ +P P+PC + +L+ +T AFG+RRK LRQSL+ Sbjct: 188 ARILFDVPPSAFVPPPKVTSSVVRLVPRAAPLPCRVRALEAVTGAAFGQRRKMLRQSLRA 247 Query: 244 LGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277 + LL AGI RAE + + F + L Sbjct: 248 ATPDPGPLLAAAGIPETARAEEVPVAGFVAMARALA 283 >gi|126462317|ref|YP_001043431.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029] gi|166221693|sp|A3PJZ3|RSMA_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126103981|gb|ABN76659.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029] Length = 278 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 127/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + K+ +GQNFLLDLN+ KIA +G L V+E+G GPG Sbjct: 1 MASIDGLPPLREVIRAHGLSAKRQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + P L ++++ P RLE++ DAL+VD ++ PIR Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYN+GT LL W+S+D WPPFWESLTL+FQKEV ERI A+ S YGRL++L+ W Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239 RT ++ + P F P P + S V+HF P P + L ++T AF +RRK LR Sbjct: 178 RTDPKIVLTLPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK L E +L +AGIE RAE + +E FC + L Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277 >gi|126736396|ref|ZP_01752138.1| dimethyladenosine transferase [Roseobacter sp. CCS2] gi|126714217|gb|EBA11086.1| dimethyladenosine transferase [Roseobacter sp. CCS2] Length = 278 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 122/280 (43%), Positives = 170/280 (60%), Gaps = 5/280 (1%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + L+ +++ + + KK +GQNFLLDLN+ KIA +G L G V+EIG GPG LT Sbjct: 1 MIDDLPPLREVIATHDLAAKKSLGQNFLLDLNLTAKIARLAGDLSGADVLEIGPGPGGLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL GAR+V+ IEKD + P L DI++++P RL+ I DAL V+ ++S PI+I Sbjct: 61 RGLLAEGARRVLAIEKDPRCMPALADIAARYPGRLQTINGDALTVN--PLEHLSQPIKIA 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+GT LL W++ WPPFW+ LTL+FQ+EV +RI A S YGRL++L WRT Sbjct: 119 ANLPYNVGTELLVRWLTPPEWPPFWDCLTLMFQREVAQRIVATPGSKAYGRLALLAQWRT 178 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL 241 ++ D+ P F P PKV S V+H P +L K+ AF +RRK LR +L Sbjct: 179 DPKIVMDLPPEAFSPPPKVNSAVVHLTALPAPRFAADPGTLNKVVAAAFNQRRKMLRSAL 238 Query: 242 KRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K + E+ L GI+ RAE + +E FC + L + Sbjct: 239 KSVSPDIEDHLIATGIKPTERAEQVGLEAFCALARQLNAH 278 >gi|121602690|ref|YP_988818.1| dimethyladenosine transferase [Bartonella bacilliformis KC583] gi|166221646|sp|A1US65|RSMA_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120614867|gb|ABM45468.1| dimethyladenosine transferase [Bartonella bacilliformis KC583] Length = 276 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 140/278 (50%), Positives = 189/278 (67%), Gaps = 3/278 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++N L+ +++ Y + K +GQNFL DLN+ KIA +G+++G VIEIG GPG Sbjct: 1 MPIDN-LPPLREVINAYGLQANKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119 LT+ LL GA V VIE+D++ P L +I +P +L +I DDALK D K Sbjct: 60 LTRALLAKGA-IVTVIERDKRCLPALLEIEKHYPKKLNLIFDDALKQDLSKLSETYPEKP 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RIIANLPYNIGT+LL NW+ +WPPF+ES+TL+FQ+EV +RITA SPHY RLSVL G Sbjct: 119 RIIANLPYNIGTQLLLNWLLTTSWPPFYESMTLMFQREVAKRITATPQSPHYSRLSVLAG 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WRT A + FD+ P F P+PKVTS+VI+ IP P+ C ++ L +T+ AFG++RK LRQ Sbjct: 179 WRTIAKIAFDVPPQAFIPAPKVTSSVINIIPRPQPLACSVQKLSLVTKVAFGEKRKMLRQ 238 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK +GG+ LL +AGI+ RAE L I +F + N++T Sbjct: 239 SLKTIGGKELLEKAGIDETRRAETLLIPEFITLANLMT 276 >gi|126728792|ref|ZP_01744607.1| dimethyladenosine transferase [Sagittula stellata E-37] gi|126710722|gb|EBA09773.1| dimethyladenosine transferase [Sagittula stellata E-37] Length = 279 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 121/279 (43%), Positives = 171/279 (61%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ +++ KK +GQNFLLDLN+ +IA G L + V+E+G GPG Sbjct: 1 MSQIDNLPPLREVIATHQLSAKKALGQNFLLDLNLTARIARIPGDLSQMDVLEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GAR+V+ IEKD + P L +I+ +P RLE+I+ DAL++D ++ PI Sbjct: 61 LTRGLLSGGARRVLAIEKDARCLPALAEIADAYPGRLEVIEGDALQID--PLAHLEPPIA 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I ANLPYN+GT LL W++ WPP W SLTL+FQKEV ERI AQ YGRL++L+ W Sbjct: 119 ICANLPYNVGTELLTRWLTPPEWPPVWSSLTLMFQKEVAERIVAQPGGKAYGRLAILSQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 RT A + + P F P PKV+S V+H P P ++L++I AF +RRK LR Sbjct: 179 RTDARIALTLPPGAFTPPPKVSSAVVHLTALPAPRYPANPKTLERIVAMAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK E+ L GI RAE +S+E FC + Sbjct: 239 ALKGAAPDIEDRLRSVGIPPTERAEQVSLEAFCALARTF 277 >gi|217978375|ref|YP_002362522.1| dimethyladenosine transferase [Methylocella silvestris BL2] gi|217503751|gb|ACK51160.1| dimethyladenosine transferase [Methylocella silvestris BL2] Length = 288 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 125/281 (44%), Positives = 172/281 (61%), Gaps = 4/281 (1%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + L+ I++ + + KK +GQNFL DLN+ +IA ++G D ++E+G GPG LT+ Sbjct: 5 TDDLPPLREIVAAFGLDAKKSLGQNFLFDLNLTGRIARAAGPQDAALILEVGPGPGGLTR 64 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LLT GARKVI IE+D++ P L+ I+ +P RLEII DAL D + P RI A Sbjct: 65 ALLTEGARKVIAIERDERCLPALRQIADHYPGRLEIIAGDALGADVAALAGDARPARICA 124 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRT 182 NLPYN+ T LL WI ++ WPP+++ L L+FQ+EV ERI A YGRL+VL WR Sbjct: 125 NLPYNVATALLTRWIESEPWPPWFDRLILMFQREVAERIVATPAQRAAYGRLAVLCNWRC 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + ++FD+SP F P PKVTS+V+ P P+ C L +TQ AFG+RRK LRQSLK Sbjct: 185 ETRILFDVSPSAFTPPPKVTSSVVELRPRAAPLACEARLLSLVTQAAFGQRRKMLRQSLK 244 Query: 243 RLG---GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LG +L AG++ RAE + IE F + L + + Sbjct: 245 SLGADDAAAILAAAGVDPTARAEEIDIEGFAALARALGERR 285 >gi|149201838|ref|ZP_01878812.1| dimethyladenosine transferase [Roseovarius sp. TM1035] gi|149144886|gb|EDM32915.1| dimethyladenosine transferase [Roseovarius sp. TM1035] Length = 283 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 118/279 (42%), Positives = 167/279 (59%), Gaps = 5/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M L +++ + + +K +GQNFLLDLN+ KIA +G L V+EIG GPG Sbjct: 1 MRALEDLPPLAKVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLGDCDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD + P L++I+ P RL ++ DAL +D +++ PIR Sbjct: 61 LTRGLLMEGARHVLAIEKDSRCLPALQEIADAAPGRLTVLNADALDLD--PLAHLTPPIR 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +++NLPYN+GT LL W++ WPPFW+SLTL+FQ+EV ERI AQ YGRL++L W Sbjct: 119 VVSNLPYNVGTELLIRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGGKAYGRLALLAQW 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 R +M + P F P PKV+S V+H P P + L+++ AF +RRK LR Sbjct: 179 RAVPRIMMHLPPGAFTPPPKVSSAVVHLTALPEPRYPADPKILERVVARAFNQRRKMLRA 238 Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK E+ L AGI+ RAE +S+E FC + + Sbjct: 239 ALKGAAPDIEDRLLSAGIKPTDRAETVSLEQFCALARRM 277 >gi|296447968|ref|ZP_06889875.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b] gi|296254535|gb|EFH01655.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b] Length = 287 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 124/285 (43%), Positives = 175/285 (61%), Gaps = 9/285 (3%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + L+ +++ + ++ K +GQNFL DLN+ +IA ++G L+G T++EIG GPG LT Sbjct: 1 MIDDLPPLREVVAKHGLMASKALGQNFLFDLNLTARIARAAGPLEGATIVEIGPGPGGLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 + LL GA +VI +E+D + P L++I +++P RL I++ DAL D + + P Sbjct: 61 RALLAEGAGRVIAVERDARCMPALREIEARYPGRLVIVEGDALAADPAQLVREHGLGGPA 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178 RI ANLPYNI T LL WI A+ WP ++ L+FQ+EV RI A YGRL+VL Sbjct: 121 RICANLPYNIATELLARWIEAEPWPSVFDRYVLMFQREVALRIVATPAQRADYGRLAVLC 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 GWRT+A ++FD+SP F P PKVTS+V+ +P+ P C L ++T+ AFG+RRK LR Sbjct: 181 GWRTRARILFDLSPSAFTPPPKVTSSVVELVPNATPAACEPRLLSQVTKAAFGQRRKMLR 240 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 QSLK L +LL AGIE RAE + I F + L D Sbjct: 241 QSLKSLPFPGLDVGSLLTAAGIEETRRAEEIDIGGFVALAQALAD 285 >gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] Length = 287 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 120/280 (42%), Positives = 180/280 (64%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++G LD +TV+EIG GPG Sbjct: 1 MSAIDGLPPLRDVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+VI IE+D++ L++I++ +P RLEI+ DA+ D + Sbjct: 61 LTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDFDPTPLLG-GERAK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+ + WPP+++ + L+FQ+EV +RI A+++ YGRL+VL+ W Sbjct: 120 IVANLPYNIATPLLIGWLCTEPWPPWYDMMVLMFQREVAQRIVAREDDDAYGRLAVLSNW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + M+FDI+P F P PKVTS+V+ P P PC +L+++ AFG+RRK LRQS Sbjct: 180 RCETNMLFDIAPSAFVPQPKVTSSVVRLAPRAAPEPCNRAALEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK LG + L AGI+ RAE +++ F + N L + Sbjct: 240 LKSLGVDPARLAAAAGIDPTRRAETVAVSGFVAMANELNN 279 >gi|148977505|ref|ZP_01814094.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3] gi|145963300|gb|EDK28566.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3] Length = 271 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 142/269 (52%), Gaps = 7/269 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G +T+ + L K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I + DA+K DFE+ ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLADKLTIHEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K T + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVTPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ P+ P P L+ L ++ +E F +RRKT+R K L +++L + Sbjct: 181 VPPPKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKDVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDI 282 GI ++R ENL+++ F + N L DN + Sbjct: 241 GINPSMRPENLTLQQFVDMANWLHDNHNA 269 >gi|104779701|ref|YP_606199.1| dimethyladenosine transferase [Pseudomonas entomophila L48] gi|95108688|emb|CAK13382.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Pseudomonas entomophila L48] Length = 266 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 92/268 (34%), Positives = 145/268 (54%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILQHKFAGRGN-FRLHQGDALKFDFNQLGVPERSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLAHAN---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDPLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 AG++ +LR E L + F R+ + L + Q Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAEQQ 265 >gi|326386744|ref|ZP_08208365.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM 19370] gi|326208797|gb|EGD59593.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM 19370] Length = 281 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 113/270 (41%), Positives = 156/270 (57%), Gaps = 4/270 (1%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + +K +GQNFL D +L +IA G L G V+E+G GPG LT+ LL Sbjct: 7 PPLRDVVARHGLSAQKSLGQNFLFDEQLLDRIAAVPGKLAGADVLEVGPGPGGLTRALLR 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR V IE D++ P L ++ P +L +I+ DA+K+ E F I ANLPY Sbjct: 67 AGAR-VTAIEMDRRCLPALAELGEAFPGQLRVIEGDAMKIAPETLFEGE--WHIAANLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT L W+S WPP W SLTL+FQ EV ERI A+ S YGRL++L+ WR + Sbjct: 124 NVGTGLFTGWLSGQAWPPRWRSLTLMFQLEVAERIVAKTGSDAYGRLAILSQWRATPRIA 183 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246 + F P PKV S ++H P P +L+++T+ AFG+RRK LRQSLK L G Sbjct: 184 MKVHRSAFTPPPKVMSAIVHVEPAEMPDGVSARTLERVTEAAFGQRRKMLRQSLKGLPGA 243 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L GI+ RAE L + DF I I+ Sbjct: 244 LDALETLGIDPQRRAETLDVADFVAIARIM 273 >gi|227552435|ref|ZP_03982484.1| dimethyladenosine transferase [Enterococcus faecium TX1330] gi|257888325|ref|ZP_05667978.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733] gi|257896785|ref|ZP_05676438.1| dimethyladenosine transferase [Enterococcus faecium Com12] gi|293378583|ref|ZP_06624746.1| dimethyladenosine transferase [Enterococcus faecium PC4.1] gi|227178447|gb|EEI59419.1| dimethyladenosine transferase [Enterococcus faecium TX1330] gi|257824379|gb|EEV51311.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733] gi|257833350|gb|EEV59771.1| dimethyladenosine transferase [Enterococcus faecium Com12] gi|292642912|gb|EFF61059.1| dimethyladenosine transferase [Enterococcus faecium PC4.1] Length = 294 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 154/289 (53%), Gaps = 20/289 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L Sbjct: 10 PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A++V+ E D + P+L D + N + II D LK D + F+ P++++ Sbjct: 70 MH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S ++ P ++ ++T+ AF +RRKTL + Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L+ G++ L AGI+ R E LS+++F ++N +++N+ Sbjct: 245 LQHSYGKDDQTKTWLSKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293 >gi|170723958|ref|YP_001751646.1| dimethyladenosine transferase [Pseudomonas putida W619] gi|169761961|gb|ACA75277.1| dimethyladenosine transferase [Pseudomonas putida W619] Length = 266 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 91/268 (33%), Positives = 145/268 (54%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL+ + N + Q DALK DF + + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILQHKFAGRDN-FRLHQGDALKFDFNQLGVPARSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDHLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 AG++ +LR E L + F R+ + L + Q Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLANQQ 265 >gi|83648741|ref|YP_437176.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396] gi|119365027|sp|Q2S9C3|RSMA_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83636784|gb|ABC32751.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396] Length = 273 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 90/264 (34%), Positives = 140/264 (53%), Gaps = 7/264 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ +I S ++EIG G G LT+ LL G V +E Sbjct: 9 GHQARKRFGQNFLHDQGVIDRIVRSINPKSDQNLVEIGPGLGALTEELLKSGG-SVTAVE 67 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ PIL+ +P + +I+ DALK DF + P+R+I NLPYNI T L+F+ Sbjct: 68 LDRDLTPILRTKFFNYP-QFNVIEADALKFDFTQLATPERPMRLIGNLPYNISTPLIFHL 126 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + T+ + + + QKEV +R+ A+ YGRL V+ + K +F++ P F P Sbjct: 127 L---TFRGLVQDMYFMLQKEVVDRLAAKPGEDAYGRLGVMAQYYCKVESLFNVGPGAFQP 183 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S ++ P+ P C + L + ++AF RRKTLR +LK+L + L I Sbjct: 184 APKVWSAIVRLTPYTEPPLACKDVATLTTVVRQAFAMRRKTLRNTLKQLITVDALQSLDI 243 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 + +R E L + +F RI + + D+ Sbjct: 244 DPQIRPERLGLPEFVRIADYVYDH 267 >gi|254562982|ref|YP_003070077.1| dimethyladenosine transferase [Methylobacterium extorquens DM4] gi|254270260|emb|CAX26254.1| dimethyladenosine transferase [Methylobacterium extorquens DM4] Length = 296 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 128/290 (44%), Positives = 191/290 (65%), Gaps = 10/290 (3%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ Sbjct: 8 TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LL GA++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+A Sbjct: 68 ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGEG-PVRIVA 126 Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178 NLPYN+ T LL W+ ADT WPP+W+S TL+FQ+EV ERI A ++ +YGRL VL Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWDSATLMFQREVAERIVADESDRANYGRLGVLC 186 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 GWRT+AT++FD++P F P PKVTS+V+H P P+PC + L+++T+ AFG+RRK LR Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLR 246 Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT--DNQDIAI 284 QSLK + LL AG+ RAE + + F + L ++++ A+ Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGESRESAL 296 >gi|323135841|ref|ZP_08070924.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242] gi|322398932|gb|EFY01451.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242] Length = 300 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 25/301 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS----------------- 45 M++ L+ +++ + + KK +GQNFL DLN+ +IA ++G Sbjct: 1 MSDALPPLRDVVARHGLDAKKTLGQNFLFDLNLTARIARAAGPFTHAAEKSSDFSDKSMH 60 Query: 46 -LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 TV+EIG GPG LT+ LL GAR VI +E+D + P L +I++ +P RL +++ DA Sbjct: 61 DETATTVVEIGPGPGGLTRALLAQGAR-VIAVERDARCLPALAEIAAHYPGRLTVVEGDA 119 Query: 105 LKVDFEKF---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 L++D + P RI ANLPYN+ T LL WI A+ WP ++ L+FQKEV R Sbjct: 120 LEIDAAELVRAHGAGGPARICANLPYNVATALLTRWIEAEPWPSVFDRYVLMFQKEVALR 179 Query: 162 ITAQKNSP-HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220 I A YGRL+VL GWRTKA ++FD+SP F P PKVTS+V+ +P+ +P+ C Sbjct: 180 IVATPAQRADYGRLAVLCGWRTKARILFDVSPAAFTPPPKVTSSVVELVPNPSPLACDPR 239 Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L ++TQ AFG+RRK LRQSL+ LG + LL AGIE RAE + + F + N L Sbjct: 240 ALFRVTQAAFGQRRKMLRQSLRTLGVDASALLAAAGIEETKRAEEIDVPGFVALANALAS 299 Query: 279 N 279 + Sbjct: 300 H 300 >gi|269960921|ref|ZP_06175291.1| dimethyladenosine transferase [Vibrio harveyi 1DA3] gi|269834361|gb|EEZ88450.1| dimethyladenosine transferase [Vibrio harveyi 1DA3] Length = 269 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 137/266 (51%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L L+++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 GI ++R ENL+++ F + N L DN Sbjct: 241 GINPSMRPENLTLQQFVAMANWLADN 266 >gi|91227108|ref|ZP_01261592.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01] gi|254229739|ref|ZP_04923147.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|262392439|ref|YP_003284293.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|269964664|ref|ZP_06178902.1| dimethyladenosine transferase [Vibrio alginolyticus 40B] gi|91188760|gb|EAS75047.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01] gi|151937706|gb|EDN56556.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|262336033|gb|ACY49828.1| dimethyladenosine transferase [Vibrio sp. Ex25] gi|269830563|gb|EEZ84784.1| dimethyladenosine transferase [Vibrio alginolyticus 40B] Length = 269 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 135/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLR-THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L L ++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLVPYEELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSTEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ ++R ENL++E F + N L DN Sbjct: 241 GVNPSMRPENLTLEQFVAMANWLADN 266 >gi|293573156|ref|ZP_06684093.1| dimethyladenosine transferase [Enterococcus faecium E980] gi|291606794|gb|EFF36179.1| dimethyladenosine transferase [Enterococcus faecium E980] Length = 294 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 154/289 (53%), Gaps = 20/289 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L Sbjct: 10 PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A++V+ E D + P+L D + N + II D LK D + F+ P++++ Sbjct: 70 MH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S ++ P ++ ++T+ AF +RRKTL + Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L+ G++ L AGI+ R E LS+++F ++N +++N+ Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293 >gi|317046866|ref|YP_004114514.1| dimethyladenosine transferase [Pantoea sp. At-9b] gi|316948483|gb|ADU67958.1| dimethyladenosine transferase [Pantoea sp. At-9b] Length = 274 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 140/281 (49%), Gaps = 16/281 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I+ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQKGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ V+E D+ L+ +L I Q DA+ DF P+R+ Sbjct: 53 EPVGERL-DELTVVELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFSALAREKGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + + QKEV R+ A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +P+ P + L +IT EAFG+RRKTLR Sbjct: 168 CQVIPVLEVPPQSFTPPPKVDSAVVRLVPYAQPQHPVSDVRLLSRITTEAFGQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 SL L L I+ +LRAEN+S+ +C++ N L ++Q Sbjct: 228 SLGHLFAAGALDALNIDASLRAENVSVAQYCQLANWLGNHQ 268 >gi|167031448|ref|YP_001666679.1| dimethyladenosine transferase [Pseudomonas putida GB-1] gi|166857936|gb|ABY96343.1| dimethyladenosine transferase [Pseudomonas putida GB-1] Length = 266 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 89/268 (33%), Positives = 143/268 (53%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILQHKFADRGN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + L+++ +EAF +RRKTLR ++K L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDAKLLEQVVREAFNQRRKTLRNTMKGLLDSAAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 AG++ +LR E L + F R+ + L D Q Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQQ 265 >gi|257899761|ref|ZP_05679414.1| dimethyladenosine transferase [Enterococcus faecium Com15] gi|257837673|gb|EEV62747.1| dimethyladenosine transferase [Enterococcus faecium Com15] Length = 294 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 20/289 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L Sbjct: 10 PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A++V+ E D + P+L D + N + II D LK D + F P++++ Sbjct: 70 MH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFQEELPLKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S ++ P ++ ++T+ AF +RRKTL + Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L+ G++ L AGI+ R E LS+++F ++N +++N+ Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293 >gi|240140378|ref|YP_002964857.1| dimethyladenosine transferase [Methylobacterium extorquens AM1] gi|240010354|gb|ACS41580.1| dimethyladenosine transferase [Methylobacterium extorquens AM1] Length = 296 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 128/281 (45%), Positives = 186/281 (66%), Gaps = 8/281 (2%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ Sbjct: 8 TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LL GA++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+A Sbjct: 68 ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVA 126 Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178 NLPYN+ T LL W+ ADT WPP+WES TL+FQ+EV ERI A ++ +YGRL VL Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLC 186 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 GWRT+AT++FD++P F P PKVTS+V+H P P+PC + L+++T+ AFG+RRK LR Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLR 246 Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277 QSLK + LL AG+ RAE + + F + +L Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVAGFVAMARVLE 287 >gi|229548872|ref|ZP_04437597.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200] gi|255971386|ref|ZP_05421972.1| dimethyladenosine transferase [Enterococcus faecalis T1] gi|257421180|ref|ZP_05598170.1| dimethyladenosine transferase dimethyltransferase [Enterococcus faecalis X98] gi|312952797|ref|ZP_07771659.1| dimethyladenosine transferase [Enterococcus faecalis TX0102] gi|229305893|gb|EEN71889.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200] gi|255962404|gb|EET94880.1| dimethyladenosine transferase [Enterococcus faecalis T1] gi|257163004|gb|EEU92964.1| dimethyladenosine transferase dimethyltransferase [Enterococcus faecalis X98] gi|310629313|gb|EFQ12596.1| dimethyladenosine transferase [Enterococcus faecalis TX0102] gi|315153008|gb|EFT97024.1| dimethyladenosine transferase [Enterococcus faecalis TX0031] gi|315155239|gb|EFT99255.1| dimethyladenosine transferase [Enterococcus faecalis TX0043] gi|315157566|gb|EFU01583.1| dimethyladenosine transferase [Enterococcus faecalis TX0312] Length = 295 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL Y KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKYGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|329850882|ref|ZP_08265727.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19] gi|328841197|gb|EGF90768.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19] Length = 275 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 117/274 (42%), Positives = 164/274 (59%), Gaps = 7/274 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +L+ L + ++ KK GQ+FLLDLNI +KI G DG TVIE+G GPG LT+ LL Sbjct: 5 PTLRESLEQHGLMAKKAFGQHFLLDLNITRKIVRLGGPFDGDTVIEVGPGPGGLTRALLE 64 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIAN 124 A VI +EKD +F +L +++ +R E+I+ DALKVD + +S I++N Sbjct: 65 SEAAHVIAVEKDSRFLELLGELNEVFGDRFEVIEGDALKVDEAQLLADRKLSPQAHIVSN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+GT LL W++ P +SLTL+FQ EV R+ A YGRLSV++ A Sbjct: 125 LPYNVGTPLLIKWLTGPWRP---KSLTLMFQLEVALRVVAPVGDDDYGRLSVISQILCDA 181 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + D+ F P P+V S V+ IP P P +++L+K+T AFG+RRK LR SLK Sbjct: 182 SKIMDLPARAFTPPPRVDSAVVRLIPKADRPAPAVIKNLEKVTAAAFGQRRKMLRSSLKS 241 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LGGE LL +A I+ LRAE + + F R+ L+ Sbjct: 242 LGGEVLLDKAAIDATLRAEQVGPDGFLRLATALS 275 >gi|26987143|ref|NP_742568.1| dimethyladenosine transferase [Pseudomonas putida KT2440] gi|33516928|sp|Q88QT6|RSMA_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24981775|gb|AAN66032.1|AE016232_5 dimethyladenosine transferase [Pseudomonas putida KT2440] gi|313496767|gb|ADR58133.1| KsgA [Pseudomonas putida BIRD-1] Length = 267 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 92/268 (34%), Positives = 144/268 (53%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH P P L+++ +EAF +RRKTLR ++K L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 AG++ +LR E L + F R+ + L D Q Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQQ 265 >gi|229546781|ref|ZP_04435506.1| dimethyladenosine transferase [Enterococcus faecalis TX1322] gi|256854221|ref|ZP_05559585.1| dimethyladenosine transferase [Enterococcus faecalis T8] gi|307290952|ref|ZP_07570842.1| dimethyladenosine transferase [Enterococcus faecalis TX0411] gi|229308130|gb|EEN74117.1| dimethyladenosine transferase [Enterococcus faecalis TX1322] gi|256709781|gb|EEU24825.1| dimethyladenosine transferase [Enterococcus faecalis T8] gi|306498022|gb|EFM67549.1| dimethyladenosine transferase [Enterococcus faecalis TX0411] gi|315029806|gb|EFT41738.1| dimethyladenosine transferase [Enterococcus faecalis TX4000] Length = 295 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I H P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRHATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 245 LTHFYGKDEQTVAWLKVSLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|37524611|ref|NP_927955.1| dimethyladenosine transferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|62900562|sp|Q7N8V7|RSMA_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|36784035|emb|CAE12904.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 272 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 151/283 (53%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ IA + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIAAAINPQPGQAVLEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + K+ V+E D+ L+ + Q ++L IIQ DA+ V+F + P+R+ Sbjct: 53 EPVGER-MDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGKPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A S +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKTFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH + P P + L +IT +AF +RRKT+R Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAVVRLVPHKSIPHPVKNIRMLSRITTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ + RAEN+S+E +C++ N L++ ++ Sbjct: 228 SLGDLFTVEQLTELGIDPSTRAENISVEQYCKMANWLSEQPEM 270 >gi|257081179|ref|ZP_05575540.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol] gi|256989209|gb|EEU76511.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol] gi|323480116|gb|ADX79555.1| dimethyladenosine transferase [Enterococcus faecalis 62] Length = 295 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAMTVTNEKEFFKLTKASFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|149191630|ref|ZP_01869874.1| dimethyladenosine transferase [Vibrio shilonii AK1] gi|148834530|gb|EDL51523.1| dimethyladenosine transferase [Vibrio shilonii AK1] Length = 268 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 83/268 (30%), Positives = 137/268 (51%), Gaps = 7/268 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYVIDGIVSAINPRPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I + DA++ DF + N ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLGDKLTIHEGDAMRFDFTQLVNPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L+ L ++ ++ F +RRKT+R K L L + Sbjct: 181 VPPPKVDSAVVRLVPYEELPYPATSLKWLDRVCRDGFNQRRKTVRNCYKSLMSAETLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQD 281 G+ ++R ENL+++ F + N L +N + Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLDENHN 268 >gi|29375520|ref|NP_814674.1| dimethyladenosine transferase [Enterococcus faecalis V583] gi|227517856|ref|ZP_03947905.1| dimethyladenosine transferase [Enterococcus faecalis TX0104] gi|227555047|ref|ZP_03985094.1| dimethyladenosine transferase [Enterococcus faecalis HH22] gi|255974004|ref|ZP_05424590.1| dimethyladenosine transferase [Enterococcus faecalis T2] gi|256617805|ref|ZP_05474651.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200] gi|256761690|ref|ZP_05502270.1| dimethyladenosine transferase [Enterococcus faecalis T3] gi|256957208|ref|ZP_05561379.1| dimethyladenosine transferase [Enterococcus faecalis DS5] gi|257077820|ref|ZP_05572181.1| dimethyladenosine transferase [Enterococcus faecalis JH1] gi|257083847|ref|ZP_05578208.1| dimethyladenosine transferase [Enterococcus faecalis Fly1] gi|257086272|ref|ZP_05580633.1| dimethyladenosine transferase [Enterococcus faecalis D6] gi|257089346|ref|ZP_05583707.1| dimethyladenosine transferase [Enterococcus faecalis CH188] gi|257415498|ref|ZP_05592492.1| dimethyladenosine transferase [Enterococcus faecalis AR01/DG] gi|257418530|ref|ZP_05595524.1| dimethyladenosine transferase [Enterococcus faecalis T11] gi|293383814|ref|ZP_06629721.1| dimethyladenosine transferase [Enterococcus faecalis R712] gi|293388710|ref|ZP_06633203.1| dimethyladenosine transferase [Enterococcus faecalis S613] gi|294780523|ref|ZP_06745886.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1] gi|300859868|ref|ZP_07105956.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11] gi|307268011|ref|ZP_07549399.1| dimethyladenosine transferase [Enterococcus faecalis TX4248] gi|307275353|ref|ZP_07556496.1| dimethyladenosine transferase [Enterococcus faecalis TX2134] gi|307278369|ref|ZP_07559444.1| dimethyladenosine transferase [Enterococcus faecalis TX0860] gi|307286744|ref|ZP_07566830.1| dimethyladenosine transferase [Enterococcus faecalis TX0109] gi|312901521|ref|ZP_07760795.1| dimethyladenosine transferase [Enterococcus faecalis TX0470] gi|312904496|ref|ZP_07763655.1| dimethyladenosine transferase [Enterococcus faecalis TX0635] gi|312906970|ref|ZP_07765966.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512] gi|312978773|ref|ZP_07790500.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516] gi|33516925|sp|Q837A7|RSMA_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29342980|gb|AAO80744.1| dimethyladenosine transferase [Enterococcus faecalis V583] gi|227074699|gb|EEI12662.1| dimethyladenosine transferase [Enterococcus faecalis TX0104] gi|227175834|gb|EEI56806.1| dimethyladenosine transferase [Enterococcus faecalis HH22] gi|255966876|gb|EET97498.1| dimethyladenosine transferase [Enterococcus faecalis T2] gi|256597332|gb|EEU16508.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200] gi|256682941|gb|EEU22636.1| dimethyladenosine transferase [Enterococcus faecalis T3] gi|256947704|gb|EEU64336.1| dimethyladenosine transferase [Enterococcus faecalis DS5] gi|256985850|gb|EEU73152.1| dimethyladenosine transferase [Enterococcus faecalis JH1] gi|256991877|gb|EEU79179.1| dimethyladenosine transferase [Enterococcus faecalis Fly1] gi|256994302|gb|EEU81604.1| dimethyladenosine transferase [Enterococcus faecalis D6] gi|256998158|gb|EEU84678.1| dimethyladenosine transferase [Enterococcus faecalis CH188] gi|257157326|gb|EEU87286.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG] gi|257160358|gb|EEU90318.1| dimethyladenosine transferase [Enterococcus faecalis T11] gi|291078890|gb|EFE16254.1| dimethyladenosine transferase [Enterococcus faecalis R712] gi|291081867|gb|EFE18830.1| dimethyladenosine transferase [Enterococcus faecalis S613] gi|294452350|gb|EFG20789.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1] gi|300850686|gb|EFK78435.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11] gi|306502222|gb|EFM71506.1| dimethyladenosine transferase [Enterococcus faecalis TX0109] gi|306504875|gb|EFM74070.1| dimethyladenosine transferase [Enterococcus faecalis TX0860] gi|306507987|gb|EFM77114.1| dimethyladenosine transferase [Enterococcus faecalis TX2134] gi|306515652|gb|EFM84179.1| dimethyladenosine transferase [Enterococcus faecalis TX4248] gi|310626955|gb|EFQ10238.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512] gi|310632194|gb|EFQ15477.1| dimethyladenosine transferase [Enterococcus faecalis TX0635] gi|311288480|gb|EFQ67036.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516] gi|311291421|gb|EFQ69977.1| dimethyladenosine transferase [Enterococcus faecalis TX0470] gi|315027121|gb|EFT39053.1| dimethyladenosine transferase [Enterococcus faecalis TX2137] gi|315032435|gb|EFT44367.1| dimethyladenosine transferase [Enterococcus faecalis TX0017] gi|315034331|gb|EFT46263.1| dimethyladenosine transferase [Enterococcus faecalis TX0027] gi|315145777|gb|EFT89793.1| dimethyladenosine transferase [Enterococcus faecalis TX2141] gi|315148093|gb|EFT92109.1| dimethyladenosine transferase [Enterococcus faecalis TX4244] gi|315149696|gb|EFT93712.1| dimethyladenosine transferase [Enterococcus faecalis TX0012] gi|315165204|gb|EFU09221.1| dimethyladenosine transferase [Enterococcus faecalis TX1302] gi|315167928|gb|EFU11945.1| dimethyladenosine transferase [Enterococcus faecalis TX1341] gi|315172038|gb|EFU16055.1| dimethyladenosine transferase [Enterococcus faecalis TX1342] gi|315173444|gb|EFU17461.1| dimethyladenosine transferase [Enterococcus faecalis TX1346] gi|315574151|gb|EFU86342.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B] gi|315577282|gb|EFU89473.1| dimethyladenosine transferase [Enterococcus faecalis TX0630] gi|315581706|gb|EFU93897.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A] gi|327534516|gb|AEA93350.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF] Length = 295 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] Length = 287 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 121/280 (43%), Positives = 178/280 (63%), Gaps = 3/280 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ ++ + + +K +GQNFLLDLN+ +IA ++G L+ TVIEIG GPG Sbjct: 1 MSTIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTARIARAAGPLEDATVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL +GA++VI IE+D + L++IS ++P RL I+ DA + D + + Sbjct: 61 LTRALLAMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQFDSRPLLGTTR-AK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL +W+S + WPP+++++ L+FQ+EV ERI A++N YGRL+VL+ W Sbjct: 120 IVANLPYNIATALLIDWLSVEPWPPWYDTMVLMFQREVAERIVARENEEAYGRLAVLSNW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++FDISP F P PK+TS+V+ +P P C L+++ AFG+RRK LRQS Sbjct: 180 RAETKILFDISPAAFVPQPKITSSVVRLVPRDKPETCERRLLEQVAAAAFGQRRKMLRQS 239 Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L + L AGIE RAE + I F + L D Sbjct: 240 LKSLPADPARLTAAAGIEPTQRAETVPISGFAAMARELAD 279 >gi|153834241|ref|ZP_01986908.1| dimethyladenosine transferase [Vibrio harveyi HY01] gi|148869429|gb|EDL68435.1| dimethyladenosine transferase [Vibrio harveyi HY01] Length = 269 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L+++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLVPYEELPHPAKDFRLLERVCREGFNQRRKTVRNCYKALISAEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ ++R ENL+++ F + N L DN Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266 >gi|148545687|ref|YP_001265789.1| dimethyladenosine transferase [Pseudomonas putida F1] gi|148509745|gb|ABQ76605.1| dimethyladenosine transferase [Pseudomonas putida F1] Length = 267 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 92/268 (34%), Positives = 143/268 (53%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + N + Q DALK DF + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILHHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH P P L+++ +EAF +RRKTLR ++K L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 AG++ +LR E L + F R+ + L D Q Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQQ 265 >gi|257880094|ref|ZP_05659747.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933] gi|257882326|ref|ZP_05661979.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502] gi|257885523|ref|ZP_05665176.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501] gi|257891185|ref|ZP_05670838.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410] gi|258614573|ref|ZP_05712343.1| dimethyladenosine transferase [Enterococcus faecium DO] gi|260560297|ref|ZP_05832473.1| dimethyladenosine transferase [Enterococcus faecium C68] gi|293563099|ref|ZP_06677565.1| dimethyladenosine transferase [Enterococcus faecium E1162] gi|293567525|ref|ZP_06678870.1| dimethyladenosine transferase [Enterococcus faecium E1071] gi|294623379|ref|ZP_06702238.1| dimethyladenosine transferase [Enterococcus faecium U0317] gi|314940231|ref|ZP_07847404.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04] gi|314941710|ref|ZP_07848589.1| dimethyladenosine transferase [Enterococcus faecium TX0133C] gi|314947646|ref|ZP_07851055.1| dimethyladenosine transferase [Enterococcus faecium TX0082] gi|314950632|ref|ZP_07853712.1| dimethyladenosine transferase [Enterococcus faecium TX0133A] gi|314992501|ref|ZP_07857922.1| dimethyladenosine transferase [Enterococcus faecium TX0133B] gi|314996345|ref|ZP_07861398.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01] gi|257814322|gb|EEV43080.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933] gi|257817984|gb|EEV45312.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502] gi|257821379|gb|EEV48509.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501] gi|257827545|gb|EEV54171.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410] gi|260073642|gb|EEW61968.1| dimethyladenosine transferase [Enterococcus faecium C68] gi|291589768|gb|EFF21571.1| dimethyladenosine transferase [Enterococcus faecium E1071] gi|291597226|gb|EFF28418.1| dimethyladenosine transferase [Enterococcus faecium U0317] gi|291605013|gb|EFF34481.1| dimethyladenosine transferase [Enterococcus faecium E1162] gi|313589488|gb|EFR68333.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01] gi|313592961|gb|EFR71806.1| dimethyladenosine transferase [Enterococcus faecium TX0133B] gi|313597179|gb|EFR76024.1| dimethyladenosine transferase [Enterococcus faecium TX0133A] gi|313599482|gb|EFR78325.1| dimethyladenosine transferase [Enterococcus faecium TX0133C] gi|313640551|gb|EFS05131.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04] gi|313645887|gb|EFS10467.1| dimethyladenosine transferase [Enterococcus faecium TX0082] Length = 294 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 153/288 (53%), Gaps = 20/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L Sbjct: 10 PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A++V+ E D + P+L D + N + I+ D LK D + F+ P++++ Sbjct: 70 KH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S ++ P ++ ++T+ AF +RRKTL + Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+ G++ L AGI+ R E LS+++F ++N +++N Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292 >gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] Length = 281 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 121/271 (44%), Positives = 169/271 (62%), Gaps = 7/271 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + +K +GQ+FL DLN+ +IA ++G L +VIEIG GPG LT+ LL Sbjct: 5 PPLREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLTVGSVIEIGPGPGGLTRALLD 64 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR+VI IE+D + I +I+ +P RLEI+ DA+ VD + + P RI+ANLPY Sbjct: 65 AGARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADAMTVDAAELGEV--PRRIVANLPY 122 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T LL W+ +E L L+FQKEV +R+ A S HYGRLSV+T WR + + Sbjct: 123 NISTALLLGWLRRADA---FERLVLMFQKEVVDRLAAPPRSEHYGRLSVITQWRCEVRPL 179 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 F++ F P P VTSTV+ IP P+ P E+L+++T AFG+RRK LR SLK LGG Sbjct: 180 FNVDRRAFTPPPAVTSTVVDLIPRAEPLAPARFETLERVTAAAFGQRRKMLRSSLKSLGG 239 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E+LL + GI RAE + +E FC + L Sbjct: 240 AEDLLERTGILPTARAEEIPVEGFCALARAL 270 >gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 276 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 122/275 (44%), Positives = 167/275 (60%), Gaps = 7/275 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + +K +GQ+FL DLN+ +IA ++G L TVIEIG GPG LT+ LL Sbjct: 5 PPLRDVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLSVGTVIEIGPGPGGLTRALLD 64 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR VI IE+D + I +I+ +P RLEII DA+ +D + P RI+ANLPY Sbjct: 65 AGARHVIAIERDDRAIAIQNEIAEAYPGRLEIIAADAMTIDAAGLGEM--PRRIVANLPY 122 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T LL W+ +E L L+FQKEV +R+ A S HYGRLSV+T W + + Sbjct: 123 NISTALLLGWLRRAQA---FERLILMFQKEVVDRLAAAPRSDHYGRLSVITQWLCEVRPL 179 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 F++ F P P VTSTV+ IP P+ P E+L+++T AFG+RRK LR SLK LGG Sbjct: 180 FNVDRRAFTPPPAVTSTVVDLIPRSQPLAPARFETLERVTAAAFGQRRKMLRSSLKPLGG 239 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 E LL + GI RAE + +E FC + L + Q Sbjct: 240 AEELLERTGILPTARAEEIPVEGFCALARALDERQ 274 >gi|163797528|ref|ZP_02191479.1| 16S rRNA dimethylase [alpha proteobacterium BAL199] gi|159177277|gb|EDP61836.1| 16S rRNA dimethylase [alpha proteobacterium BAL199] Length = 283 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 121/275 (44%), Positives = 169/275 (61%), Gaps = 6/275 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ ++ KK +GQNFLLD+N+ ++IA ++G+L+ T IEIG GPG LT+ LL Sbjct: 13 PPLREAIATANFSAKKSLGQNFLLDINLTRRIARAAGALETGTTIEIGPGPGGLTRALLI 72 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GA +I IE+D + L + RL +++DDA +VD ++P R++ANLPY Sbjct: 73 EGAVDLIAIERDSRAAEALAPLVQAAEGRLRLVEDDATEVDVSSL--GAAPRRVVANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ TRLL W++ P +ESLTL+FQKEV +R+ A S YGRLSV W + Sbjct: 131 NVATRLLLGWLAT---PTSFESLTLMFQKEVADRLLAAPGSDAYGRLSVFVQWLCTVRRV 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 D+ P F P PKV S+V+ P P+ P +L+++T+ AFG+RRK LRQSLK LGG Sbjct: 188 TDLPPSAFTPPPKVWSSVVRLEPRAEPLHPADRRTLERVTEAAFGQRRKMLRQSLKGLGG 247 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + LL AGIE R E LSI +FCR+ N L+D + Sbjct: 248 DALLIAAGIEPTERPERLSIAEFCRLANALSDRES 282 >gi|86148123|ref|ZP_01066423.1| dimethyladenosine transferase [Vibrio sp. MED222] gi|218708408|ref|YP_002416029.1| dimethyladenosine transferase [Vibrio splendidus LGP32] gi|254808268|sp|B7VIE2|RSMA_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85834110|gb|EAQ52268.1| dimethyladenosine transferase [Vibrio sp. MED222] gi|218321427|emb|CAV17379.1| Dimethyladenosine transferase [Vibrio splendidus LGP32] Length = 271 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 91/269 (33%), Positives = 139/269 (51%), Gaps = 7/269 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G +T+ + L K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ +L I + DA+K DFE+ ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLAEKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K T + ++ P F Sbjct: 124 HLFEFHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ P+ P P L+ L ++ +E F +RRKT+R K L + +L + Sbjct: 181 VPPPKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDI 282 G+ +R ENL++E F + N L D+ + Sbjct: 241 GVNPGMRPENLTLEQFVDMANWLHDSHNA 269 >gi|330448803|ref|ZP_08312450.1| dimethyladenosine transferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492994|dbj|GAA06947.1| dimethyladenosine transferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 274 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 89/266 (33%), Positives = 135/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + L G ++EIG G G +T+ + L K V Sbjct: 7 HLGHRARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTV 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I Q DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 66 IELDRDLAERLENH-PDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + + + ++ P F Sbjct: 125 HIFEFHK---DVQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESF 181 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L Sbjct: 182 VPAPKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEAL 241 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 GI + R EN+++E F + N L N Sbjct: 242 GINPSHRPENITVEQFVAMANWLDAN 267 >gi|242238054|ref|YP_002986235.1| dimethyladenosine transferase [Dickeya dadantii Ech703] gi|242130111|gb|ACS84413.1| dimethyladenosine transferase [Dickeya dadantii Ech703] Length = 272 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 99/280 (35%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIYPQSGQALVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + V+E D+ L + ++L IIQ DA+ VDF P+R+ Sbjct: 53 VPVGER-IDRFTVVELDRDLAARL-ETHPTLKDKLTIIQQDAMTVDFTALAQQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTHSIRDMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P L +IT EAF +RRKTLR Sbjct: 168 CQVIPVLEVPPSAFKPAPKVDSAVVRLVPHTTSPYPTVDTRMLGRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L + GI+ N RAEN+++E +C++ N LT++ Sbjct: 228 SLGNLFTPEQLTEQGIDPNARAENVTVEQYCQLANWLTEH 267 >gi|28897110|ref|NP_796715.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD 2210633] gi|153838977|ref|ZP_01991644.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810] gi|260361684|ref|ZP_05774711.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030] gi|260878023|ref|ZP_05890378.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034] gi|260896918|ref|ZP_05905414.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466] gi|260903390|ref|ZP_05911785.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037] gi|31340184|sp|Q87ST6|RSMA_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28805319|dbj|BAC58599.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD 2210633] gi|149747565|gb|EDM58497.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810] gi|308088709|gb|EFO38404.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466] gi|308090066|gb|EFO39761.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034] gi|308109049|gb|EFO46589.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037] gi|308115492|gb|EFO53032.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030] gi|328471908|gb|EGF42785.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio parahaemolyticus 10329] Length = 269 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L L ++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLVPYEELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSAEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ ++R ENL+++ F + N L DN Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266 >gi|304396533|ref|ZP_07378414.1| dimethyladenosine transferase [Pantoea sp. aB] gi|304356042|gb|EFM20408.1| dimethyladenosine transferase [Pantoea sp. aB] Length = 273 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 16/281 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQRDEALVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + K+ VIE D+ L + +L I Q DA+ DF P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARL-ETHPFLGPKLTIFQQDAMTFDFAALAQERGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + + QKEV R+ A + YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGNKTYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ PH F P PKV S V+ +P+ P + L +IT EAFG+RRKTLR Sbjct: 168 CQIIPVLEVPPHSFTPPPKVDSAVVRLVPYAEPPYPVSDVRILSRITTEAFGQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 SL + L + I+ LRAEN+S+ +C++ N L ++Q Sbjct: 228 SLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268 >gi|88797588|ref|ZP_01113177.1| dimethyladenosine transferase [Reinekea sp. MED297] gi|88779760|gb|EAR10946.1| dimethyladenosine transferase [Reinekea sp. MED297] Length = 262 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 135/264 (51%), Gaps = 6/264 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D NI+ +I S ++EIG G G +T+ LL + V+E Sbjct: 2 HKARKRFGQNFLHDQNIIDRIVGSIMPKPDQHMVEIGPGRGAITEPLLEATDGHLDVVEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P+L+ ++ L I + DAL+ DF P+R++ NLPYNI T L+F+ + Sbjct: 62 DRDLIPMLRAQFFRYEG-LTIHEADALQFDFGSLATDDRPLRLVGNLPYNISTPLMFHLL 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + + + + QKEV +R+ A YGRL ++ + +A +F + P F P+ Sbjct: 121 S---YSDVIKDMHFMLQKEVVQRLCAAPGDNAYGRLGIMMQYHCEARYLFTVPPGAFSPA 177 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S ++ P P E K+ + +F +RRKTL+ +LK L + GI+ Sbjct: 178 PKVESAIVRLTPRKAPKREATNYELFAKVVKASFAQRRKTLKNNLKDLLDGDGFEALGIQ 237 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 RAE L I+DF RI N + Q Sbjct: 238 PGARAETLPIDDFVRIANYVDSVQ 261 >gi|188583141|ref|YP_001926586.1| dimethyladenosine transferase [Methylobacterium populi BJ001] gi|179346639|gb|ACB82051.1| dimethyladenosine transferase [Methylobacterium populi BJ001] Length = 291 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 126/280 (45%), Positives = 185/280 (66%), Gaps = 8/280 (2%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ Sbjct: 9 DGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRA 68 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL GA++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+AN Sbjct: 69 LLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVAN 127 Query: 125 LPYNIGTRLLFNWISA----DTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTG 179 LPYN+ T LL W+ A + WPP+WES TL+FQ+EV ERI A ++ +YGRL VL G Sbjct: 128 LPYNVATVLLTGWLGAETRDERWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCG 187 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 WRT+AT++FD++P F P PKVTS+++H P P+PC + +L++IT+ AFG+RRK LRQ Sbjct: 188 WRTQATILFDVAPSAFVPPPKVTSSIVHLRPRPEPLPCRIAALERITRAAFGQRRKMLRQ 247 Query: 240 SLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + LL AG+ RAE + + F + L Sbjct: 248 SLKAATPDPARLLAAAGLPETARAEEIPVAGFVALARALE 287 >gi|253689996|ref|YP_003019186.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494254|sp|C6DEY6|RSMA_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|251756574|gb|ACT14650.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 272 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 100/280 (35%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + R VIE D+ L + ++L IIQ DA+ +DF P+R+ Sbjct: 53 APVGERMDR-FTVIELDRDLAARL-ETHPTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKTLR Sbjct: 168 CQVIPVLEVPPEAFKPAPKVDSAVVRLVPHTEIPYPVSDIRVLSRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L ++L + GI+ RAEN+S+E +CR+ N L+++ Sbjct: 228 SLGNLFTPDVLAELGIDATSRAENVSVEQYCRLANWLSEH 267 >gi|258623405|ref|ZP_05718409.1| dimethyladenosine transferase [Vibrio mimicus VM573] gi|262172456|ref|ZP_06040134.1| dimethyladenosine transferase [Vibrio mimicus MB-451] gi|258584371|gb|EEW09116.1| dimethyladenosine transferase [Vibrio mimicus VM573] gi|261893532|gb|EEY39518.1| dimethyladenosine transferase [Vibrio mimicus MB-451] Length = 272 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 7/270 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEAL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 GI +R ENL++ F + N L A Sbjct: 241 GINPGMRPENLTLAQFVALANWLDAQHQKA 270 >gi|315163005|gb|EFU07022.1| dimethyladenosine transferase [Enterococcus faecalis TX0645] Length = 295 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTCRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|253988048|ref|YP_003039404.1| dimethyladenosine transferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779498|emb|CAQ82659.1| dimethyladenosine transferase [Photorhabdus asymbiotica] Length = 272 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 151/285 (52%), Gaps = 16/285 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVAAINPQPGQAVLEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121 + + K+ V+E D+ L+ + Q ++L IIQ DA+ V+F + P+R+ Sbjct: 53 EPVGER-MDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGLPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A S +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKAFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ IPH + P P + L +IT +AF +RRKT+R Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKSIPYPVKNIRMLSRITTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 SL L L + GI+ + RAEN+S+E +C++ N L++ ++ + Sbjct: 228 SLGDLFTVEQLTEFGIDPSTRAENISVEQYCKMANYLSEQPEMQL 272 >gi|153827422|ref|ZP_01980089.1| dimethyladenosine transferase [Vibrio cholerae MZO-2] gi|149738665|gb|EDM53008.1| dimethyladenosine transferase [Vibrio cholerae MZO-2] Length = 282 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 140/275 (50%), Gaps = 8/275 (2%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 NN +++ + H +K GQNFL D I+ I + G ++EIG G G +T+ Sbjct: 6 NNLEKTMRNDV-HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITE 64 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 + K VIE D+ L++ + ++L I + DA++ DF++ ++ +R+ Sbjct: 65 P-VGREVDKFTVIELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFG 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYNI T L+F+ + + + QKEV R+ A + YGRL+V+ + K Sbjct: 123 NLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCK 179 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSL 241 + ++ P+ F P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R Sbjct: 180 VVPVLEVPPNAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCY 239 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K L L GI +R ENL++ F + N L Sbjct: 240 KGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274 >gi|156973129|ref|YP_001444036.1| dimethyladenosine transferase [Vibrio harveyi ATCC BAA-1116] gi|166221714|sp|A7MWC6|RSMA_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|156524723|gb|ABU69809.1| hypothetical protein VIBHAR_00808 [Vibrio harveyi ATCC BAA-1116] Length = 269 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L L+++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ ++R ENL+++ F + N L DN Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266 >gi|84393695|ref|ZP_00992445.1| dimethyladenosine transferase [Vibrio splendidus 12B01] gi|84375694|gb|EAP92591.1| dimethyladenosine transferase [Vibrio splendidus 12B01] Length = 271 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 138/265 (52%), Gaps = 7/265 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G +T+ + L K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I + DA+K DFE+ ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLADKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K T + ++ P F Sbjct: 124 HLFEFHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ P+ P P L+ L ++ +E F +RRKT+R K L + +L + Sbjct: 181 VPPPKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G+ +R ENL++E F + N L D Sbjct: 241 GVNPGMRPENLTLEQFVDMANWLYD 265 >gi|163853045|ref|YP_001641088.1| dimethyladenosine transferase [Methylobacterium extorquens PA1] gi|163664650|gb|ABY32017.1| dimethyladenosine transferase [Methylobacterium extorquens PA1] Length = 296 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 128/281 (45%), Positives = 185/281 (65%), Gaps = 8/281 (2%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ Sbjct: 8 TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LL GA++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+A Sbjct: 68 ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVA 126 Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178 NLPYN+ T LL W+ ADT WPP+WES TL+FQ+EV ERI A ++ +YGRL VL Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLC 186 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 GWRT+AT++FD++P F P PKVTS+V+H P P+PC + L+++T+ AFG+RRK LR Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLR 246 Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277 QSLK + LL AG+ RAE + + F + L Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVVGFVAMARALE 287 >gi|261493820|ref|ZP_05990334.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495045|ref|ZP_05991512.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309287|gb|EEY10523.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310523|gb|EEY11712.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 288 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 148/285 (51%), Gaps = 18/285 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N H +K GQNFL D+NI+ I + +G ++EIG G G Sbjct: 1 MSSTNSK-------KHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGA 53 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116 LT+ + L K+ V+E D+ L+ +L II+ DAL+ + +FN Sbjct: 54 LTEPVAEL-VDKLTVVEIDRDLAERLRHH-PFLNQKLTIIEQDALRFNVRDYFNQLNLDE 111 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +R+ NLPYNI T L+F+ + T+ + + + QKEV +R+ A NS YGRL++ Sbjct: 112 DSVRVFGNLPYNISTPLIFHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 168 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P P + L ++T +AF +RR Sbjct: 169 MAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNRVTTQAFNQRR 228 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTLR +L L L G++ RAENL+I D+ R+ N L DN Sbjct: 229 KTLRNALSTLFSAEQLEALGVDLTARAENLTIADYVRLANWLHDN 273 >gi|114328859|ref|YP_746016.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1] gi|114317033|gb|ABI63093.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1] Length = 286 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 110/269 (40%), Positives = 163/269 (60%), Gaps = 6/269 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + +K +GQ+FLLD +++ +I +G + G T IEIG GPG LT+ LL Sbjct: 17 PPLRDVIARHGLEARKALGQHFLLDPHLMARIVREAGPMQGRTAIEIGPGPGGLTRALLE 76 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A +V+ IE D + P L++++ +P+RL +++ DA++ D + P RI+ANLPY Sbjct: 77 TAAERVVAIELDHRAIPALEELAGFYPDRLTVLEADAMRADLGTL--TTGPRRIVANLPY 134 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT LL W+ +ES+TL+FQ+EV ERI A S YGRL VL W + M+ Sbjct: 135 NVGTPLLVGWLRQAA---LFESMTLMFQQEVAERICAAPGSDAYGRLGVLAQWTCRVEML 191 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + P F P PKV S V P P P +++++T AFG+RRK LR +LK LGG Sbjct: 192 MSVPPGAFHPPPKVYSAVAALWPREEQPSPALFTAMERVTAAAFGQRRKMLRGALKSLGG 251 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNI 275 E LL +AGI + RAE L+IE+F R+ Sbjct: 252 EGLLSRAGIAGDRRAETLTIEEFDRLART 280 >gi|302384604|ref|YP_003820426.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1] gi|302195232|gb|ADL02803.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1] Length = 289 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 150/293 (51%), Gaps = 19/293 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N ++ I+ Y+ +K GQNFL+D ++L KI ++G V+EIG G G + Sbjct: 3 TLGNPQKTI-EIIQKYEFAFQKKFGQNFLIDTHVLDKIITAAGVTKDDCVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L AR V+ +E D PILK+ + + N + +I DD LKVD + +N P Sbjct: 62 TQYLAE-NARHVVAVEIDSNLIPILKETLTDYEN-VTVIHDDILKVDINQIAEQYNGGRP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +++T++ QKEV +R+ S YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFENNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI H P ++ + ++ + +F +RRKT Sbjct: 177 QYYAQPYIVANVPPNCFMPRPNVGSAVIRLTRHKEPAVKAEDAGLMFRLIRASFNQRRKT 236 Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L+ L R + G+ ++R E L++E F ++N T +D Sbjct: 237 LQNGLNNSPEIPYSREQIAEAVESLGLGPSIRGEALTLEQFASLSNYFTKMKD 289 >gi|270263922|ref|ZP_06192190.1| dimethyladenosine transferase [Serratia odorifera 4Rx13] gi|270042115|gb|EFA15211.1| dimethyladenosine transferase [Serratia odorifera 4Rx13] Length = 272 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 99/280 (35%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNKVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + R + VIE D+ L + Q ++L I Q DA+ V+F + P+R+ Sbjct: 53 EPVGARMDR-MTVIELDRDLAARLANH-PQLKDKLTIHQQDAMTVNFAEMAEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ +PH NP P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTSFTPAPKVDSAVVRLVPHQVNPNPVGDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L + G++ LRAEN+S+ +C++ N L+ N Sbjct: 228 SLGDLFTPEQLTELGVDPTLRAENISVAQYCKLANWLSAN 267 >gi|260775525|ref|ZP_05884422.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450] gi|260608706|gb|EEX34871.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450] Length = 268 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 132/267 (49%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ + +L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLR-THPELAEKLTIHEGDAMRFDFTQLVKPNNRLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEYHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L L ++ ++ F +RRKT+R K L +L Q Sbjct: 181 VPPPKVDSAVVRLVPYETLPYPATSLNWLDRVCRDGFNQRRKTVRNCYKSLVNAEILEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI +R ENL++E F + N L N Sbjct: 241 GINPGMRPENLTLEQFVDLANWLDANH 267 >gi|114048606|ref|YP_739156.1| dimethyladenosine transferase [Shewanella sp. MR-7] gi|123131134|sp|Q0HS06|RSMA_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113890048|gb|ABI44099.1| dimethyladenosine transferase [Shewanella sp. MR-7] Length = 268 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V Sbjct: 6 HLGHTARKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L++ ++L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 65 VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267 >gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1] gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1] Length = 293 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 145/298 (48%), Gaps = 22/298 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +K I++ Y +K +GQNFL+D NI+ KI ++ G V EIG G G Sbjct: 1 MRELTSPSVVKDIINTYGFRVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116 LTQ L A KVI +E D+ PIL + + N +++ DALKVDF++ Sbjct: 61 LTQRLA-RSAGKVIAVEIDKNLLPILTETLTDFDNA-QVVHADALKVDFDRLAAEHTEGG 118 Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 +++ANLPY I T +L + +++ ++ L ++ QKEV ER+ A Y Sbjct: 119 FGKGAKSFKLVANLPYYITTPILMHLLTS---GFNFDCLVVMMQKEVAERLQASPGGKDY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEA 229 G LS+ + T ++ + VFFP+P V S VI P E K+ + A Sbjct: 176 GSLSIAVQYYTVPEIVTRVPKTVFFPAPDVESAVIQLTRRKRPPVTLESEEVFFKVVRAA 235 Query: 230 FGKRRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 FG+RRKTL SL G +L +A I+ R E L+IEDF + N Q+ Sbjct: 236 FGQRRKTLLNSLTGSGLAEKETWIKILEEAAIDPTRRGETLTIEDFANLANTYHRYQE 293 >gi|15640470|ref|NP_230097.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121729955|ref|ZP_01682375.1| dimethyladenosine transferase [Vibrio cholerae V52] gi|153830829|ref|ZP_01983496.1| dimethyladenosine transferase [Vibrio cholerae 623-39] gi|227080654|ref|YP_002809205.1| dimethyladenosine transferase [Vibrio cholerae M66-2] gi|254292213|ref|ZP_04962980.1| dimethyladenosine transferase [Vibrio cholerae AM-19226] gi|297580583|ref|ZP_06942509.1| dimethyladenosine transferase [Vibrio cholerae RC385] gi|298501025|ref|ZP_07010826.1| dimethyladenosine transferase [Vibrio cholerae MAK 757] gi|9654867|gb|AAF93616.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628295|gb|EAX60805.1| dimethyladenosine transferase [Vibrio cholerae V52] gi|148873688|gb|EDL71823.1| dimethyladenosine transferase [Vibrio cholerae 623-39] gi|150421870|gb|EDN13850.1| dimethyladenosine transferase [Vibrio cholerae AM-19226] gi|227008542|gb|ACP04754.1| dimethyladenosine transferase [Vibrio cholerae M66-2] gi|227012297|gb|ACP08507.1| dimethyladenosine transferase [Vibrio cholerae O395] gi|297534999|gb|EFH73834.1| dimethyladenosine transferase [Vibrio cholerae RC385] gi|297540273|gb|EFH76333.1| dimethyladenosine transferase [Vibrio cholerae MAK 757] Length = 282 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 8/275 (2%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 NN +++ + H +K GQNFL D I+ I + G ++EIG G G +T+ Sbjct: 6 NNLEKTMRNDV-HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITE 64 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 + K VIE D+ L++ + ++L I + DA++ DF++ ++ +R+ Sbjct: 65 P-VGREVDKFTVIELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFG 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYNI T L+F+ + + + QKEV R+ A + YGRL+V+ + K Sbjct: 123 NLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCK 179 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSL 241 + ++ P F P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R Sbjct: 180 VVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCY 239 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K L L GI +R ENL++ F + N L Sbjct: 240 KGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274 >gi|325276041|ref|ZP_08141856.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas sp. TJI-51] gi|324098826|gb|EGB96857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas sp. TJI-51] Length = 267 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D I+ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGIIDRILRAIHAKPGEHLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL+ + N + Q DALK DF + ++++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNRLGVPPRSLKVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + L+++ ++AF +RRKTLR ++K L + Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDAQLLERVVRDAFNQRRKTLRNTMKGLLDSAAIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 AG++ +LR E L + F R+ + L D Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQ 264 >gi|145300235|ref|YP_001143076.1| dimethyladenosine transferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853007|gb|ABO91328.1| dimethyladenosine transferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 275 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 145/281 (51%), Gaps = 11/281 (3%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M++K S K H +K GQNFL D ++ +I + G ++EIG G LT Sbjct: 1 MSSKVQSNKV---HMGHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALT 57 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121 + + K+ V+E D+ L++ ++L +I+ DA++ DF P+RI Sbjct: 58 EPVA-SQMDKMTVVELDRDLAARLREH-PTLKDKLTVIEADAMRFDFGTLMGEGKGPLRI 115 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ + E + + QKEV R++A S YGRLSV+ + Sbjct: 116 FGNLPYNISTPLIFHLCD---FADRVEDMHFMLQKEVVLRMSAGPGSKAYGRLSVMVQYY 172 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH NP + + L ++ E FG+RRKT+R Sbjct: 173 CQVIPVLEVGPGAFKPAPKVDSAVVRLVPHKNPTIVAKDIRCLSRVCTEGFGQRRKTIRN 232 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 S + L + GI+ NLR ENLS+E F I N L D Q Sbjct: 233 SFANFITDAQLTELGIDGNLRPENLSLEQFVMIANWLADQQ 273 >gi|15595789|ref|NP_249283.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAO1] gi|27151603|sp|Q9I5U5|RSMA_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|9946464|gb|AAG03981.1|AE004495_5 rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa PAO1] Length = 268 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + P E + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 A ++ LR E L + F R+ N L + Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANQLAE 263 >gi|256964244|ref|ZP_05568415.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704] gi|307271936|ref|ZP_07553204.1| dimethyladenosine transferase [Enterococcus faecalis TX0855] gi|256954740|gb|EEU71372.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704] gi|306511442|gb|EFM80444.1| dimethyladenosine transferase [Enterococcus faecalis TX0855] Length = 295 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DLAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKVSFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L G++ L +A I+ + R E LS+E+F R++N L N+ + Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295 >gi|50086027|ref|YP_047537.1| dimethyladenosine transferase [Acinetobacter sp. ADP1] gi|62900521|sp|Q6F8A0|RSMA_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49532003|emb|CAG69715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter sp. ADP1] Length = 274 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 138/262 (52%), Gaps = 7/262 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +K GQNFL D ++ KI S G V+EIG G LT L+ + Sbjct: 14 KEEGHKARKRFGQNFLHDQRVIAKIVRSVNPRPGDNVVEIGPGLAALTSPLIGEC-DALT 72 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ L D HP RL I++ DALK DF + SP+R++ NLPYNI T LL Sbjct: 73 VVELDRDLAAGLPDRV-PHPERLTIVEADALKYDFSQLATQESPLRVVGNLPYNISTPLL 131 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + + QKEV +RITA+ N+ YGRLSV+ + + T +F++ Sbjct: 132 FHLLE---FGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYFCQPTFLFEVPAGA 188 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKVTS V +P+ ++L ++ F +RRKTLR SLK + ++ + Sbjct: 189 FNPPPKVTSAVFRLVPYKEKPIVAKDEKALSRLVGHVFTQRRKTLRNSLKGMLADDAFDK 248 Query: 253 AGIETNLRAENLSIEDFCRITN 274 AGI+ R E L++ F +++ Sbjct: 249 AGIDPMARPETLTLAQFVALSD 270 >gi|255319639|ref|ZP_05360849.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82] gi|262379013|ref|ZP_06072170.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164] gi|255303323|gb|EET82530.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82] gi|262300298|gb|EEY88210.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164] Length = 270 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 93/259 (35%), Positives = 138/259 (53%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D +++KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHKARKRFGQNFLHDQRVIEKIVRSVNPQPGDNIVEIGPGLAALTAPLIAEC-EALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L +P RL II+ DALK DF + F P+R + NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPGRV-PYPERLTIIESDALKYDFSQLFKEGQPLRAVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA+ N+ YGRLSV+ + K T +F++ P F P Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTYLFEVPPGSFNP 187 Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V P+ + ++L ++ F +RRKTLR SLK + EN +AG+ Sbjct: 188 PPKVTSAVFRLEPYKDKPIVAQNEKALARLVSHVFTQRRKTLRNSLKGMLAENGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 R E L++ +F +++ Sbjct: 248 NPMARPETLTLAEFVALSD 266 >gi|254362983|ref|ZP_04979047.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica PHL213] gi|153094639|gb|EDN75443.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica PHL213] Length = 288 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 149/285 (52%), Gaps = 18/285 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N H +K GQNFL D+NI+ I + +G ++EIG G G Sbjct: 1 MSSTNSK-------KHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGA 53 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116 LT+ + L K+ V+E D+ L+ +L II+ DAL+ +F +FN Sbjct: 54 LTEPVAEL-VDKLTVVEIDRDLAERLRHH-PFLNQKLTIIEQDALRFNFRDYFNQLNLDE 111 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +R+ NLPYNI T L+F+ + T+ + + + QKEV +R+ A NS YGRL++ Sbjct: 112 DSVRVFGNLPYNISTPLIFHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 168 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P P + L ++T +AF +RR Sbjct: 169 MAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNRVTTQAFNQRR 228 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTLR +L L L G++ RAENL+I D+ R+ N L DN Sbjct: 229 KTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDN 273 >gi|258627053|ref|ZP_05721851.1| dimethyladenosine transferase [Vibrio mimicus VM603] gi|258580727|gb|EEW05678.1| dimethyladenosine transferase [Vibrio mimicus VM603] Length = 272 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 7/270 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVRPNNKLRVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEAL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 GI +R ENL++ F + N L A Sbjct: 241 GINPGMRPENLTLAQFVALANWLDAQHQKA 270 >gi|262275064|ref|ZP_06052875.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886] gi|262221627|gb|EEY72941.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886] Length = 268 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 140/268 (52%), Gaps = 7/268 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G LT+ + K+ V Sbjct: 6 HLGHRARKRFGQNFLNDPYIIDGIVSAINPQPGENLVEIGPGLGALTEPVA-REVDKLSV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L++ + ++L I + DA+K DF + + P+RI NLPYN+ T L+F Sbjct: 65 VELDRDLAERLRNH-PELADKLTIYEGDAMKFDFTQLSSDDKPLRIFGNLPYNVSTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + S + + + + QKEV R+ A NS YGRL+V+ + K + ++ P F Sbjct: 124 HLFS---FAGKVKDMHFMLQKEVVNRLAAGPNSKAYGRLTVMAQYYCKVVPVLEVPPSAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ +PH P P L+ L+++ +E F +RRKT+R K L + + Sbjct: 181 KPAPKVDSAVVRLVPHKELPHPTTSLKWLERVCREGFNQRRKTVRNCYKSLIDADTMESL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQD 281 GI+ + R E+L++ F + N + N Sbjct: 241 GIDPSARPESLTLAQFVALANWMDANHP 268 >gi|85374607|ref|YP_458669.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594] gi|122544064|sp|Q2N8W9|RSMA_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|84787690|gb|ABC63872.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594] Length = 281 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 110/277 (39%), Positives = 164/277 (59%), Gaps = 4/277 (1%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + K +GQNFL D +L +IA G L+ V+EIG GPG LT+ LL Sbjct: 5 PPLRDVIAKHGLSASKALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTRALLK 64 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR V IE D++ P L ++S +P +L +I DA+K+D + P ++ANLPY Sbjct: 65 AGAR-VTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAELM--GEPFAVVANLPY 121 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT L W+ +TWPP W SLTL+FQ+EV +RI + + YGRL+VL WR+ A+M Sbjct: 122 NVGTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVSTPGTSAYGRLAVLAQWRSAASMP 181 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246 + F P PKV S ++H P P +L+++T+ AFG+RRK LRQSLK + G Sbjct: 182 MKVHRSAFTPPPKVMSAIVHVTPDEMPEGVSARTLERLTEAAFGQRRKMLRQSLKGVPGA 241 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L + IE RAE +++E+F + L ++ + Sbjct: 242 VETLAEVAIEETRRAETVTVEEFVALARRLGASRPSS 278 >gi|59710893|ref|YP_203669.1| dimethyladenosine transferase [Vibrio fischeri ES114] gi|197334233|ref|YP_002155045.1| dimethyladenosine transferase [Vibrio fischeri MJ11] gi|62900449|sp|Q5E865|RSMA_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732638|sp|B5FGG5|RSMA_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|59478994|gb|AAW84781.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Vibrio fischeri ES114] gi|197315723|gb|ACH65170.1| dimethyladenosine transferase [Vibrio fischeri MJ11] Length = 272 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 137/269 (50%), Gaps = 7/269 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ I + L G ++EIG G G +T+ + K V Sbjct: 8 HLGHKARKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREVDKFTV 66 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 67 IELDRDLAERLRNH-PELGSKLTIHEGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 125 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 126 HLFEFHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPTAF 182 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L+ L ++ +E F +RRKT+R K L + L + Sbjct: 183 VPPPKVDSAVVRLVPYETLPYPATNLKWLDRVCREGFNQRRKTVRNCYKALLTKEQLEEL 242 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDI 282 GI ++R ENL++E F + N L N Sbjct: 243 GINPSMRPENLTLEQFVNMANWLDANHSA 271 >gi|116054320|ref|YP_788765.1| dimethyladenosine transferase [Pseudomonas aeruginosa UCBPP-PA14] gi|218889333|ref|YP_002438197.1| dimethyladenosine transferase [Pseudomonas aeruginosa LESB58] gi|254237194|ref|ZP_04930517.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa C3719] gi|296387098|ref|ZP_06876597.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAb1] gi|115589541|gb|ABJ15556.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169125|gb|EAZ54636.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa C3719] gi|218769556|emb|CAW25316.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa LESB58] Length = 268 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + P E + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 A ++ LR E L + F R+ N L + Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANRLAE 263 >gi|27364120|ref|NP_759648.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio vulnificus CMCP6] gi|37678662|ref|NP_933271.1| dimethyladenosine transferase [Vibrio vulnificus YJ016] gi|320157505|ref|YP_004189884.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O] gi|31340188|sp|Q8DED2|RSMA_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900560|sp|Q7MP86|RSMA_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27360238|gb|AAO09175.1| dimethyladenosine transferase [Vibrio vulnificus CMCP6] gi|37197402|dbj|BAC93242.1| dimethyladenosine transferase [Vibrio vulnificus YJ016] gi|319932817|gb|ADV87681.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O] Length = 268 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 136/267 (50%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HMGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLR-THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L+ L+++ +E F +RRKT+R K L E +L + Sbjct: 181 VPPPKVDSAVVRLVPYETLPHPANNLQWLERVCREGFNQRRKTVRNCYKSLMSEQVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 G+ +R ENL+++ F + N L N Sbjct: 241 GVNPGMRPENLTLQQFVAMANWLDANH 267 >gi|209693971|ref|YP_002261899.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238] gi|226729749|sp|B6EL48|RSMA_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|208007922|emb|CAQ78053.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238] Length = 277 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 134/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H KK GQNFL D ++ I + L G ++EIG G G +T+ + K V Sbjct: 8 HLGHKAKKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREIDKFTV 66 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ + ++L I + DA++ DF + + +RI NLPYNI T L+F Sbjct: 67 IELDRDLAARLR-THPELGSKLTIYEGDAMRFDFTQLIQEGNKLRIFGNLPYNISTPLMF 125 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 126 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVMPVLEVPPTAF 182 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L+ L ++ +E F +RRKT+R K L + L Sbjct: 183 VPPPKVDSAVVRLVPYEVLPFPAKNLKWLDRVCREGFNQRRKTVRNCFKALLTKEQLEAL 242 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ + R ENL++E F + N L DN Sbjct: 243 GVNPSHRPENLTLEQFVIMANWLNDN 268 >gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] Length = 284 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 122/279 (43%), Positives = 177/279 (63%), Gaps = 3/279 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ ++ + + +K +GQNFLLDLN+ KIA ++G L G TVIEIG GPG Sbjct: 1 MSVIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTAKIARAAGQLQGATVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA+ VI IE+D++ L++IS ++P+RL I+ DA D + + + Sbjct: 61 LTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFDPQPLLGTTR-AK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPYNI T LL W+S + WPP+++++ L+FQ+EV ERI A++N YGRL+VL+ W Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDAMVLMFQREVAERIVARENDEAYGRLAVLSNW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 R + ++F ISP F P P+VTS+V+ IP +P PC L+++ AFG RRK LRQS Sbjct: 180 RAETKILFHISPAAFVPQPQVTSSVVRLIPRESPEPCDRRLLEQVAAAAFGHRRKMLRQS 239 Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LK L +L AGI+ RAE + I F + L Sbjct: 240 LKSLPADPASLAAAAGIDPARRAETVPISGFVAMARELA 278 >gi|313111762|ref|ZP_07797555.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 39016] gi|310884057|gb|EFQ42651.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 39016] Length = 268 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFTSLVESGEKLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + P E + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 A ++ LR E L + F R+ N L + Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANRLAE 263 >gi|261208234|ref|ZP_05922907.1| dimethyladenosine transferase [Enterococcus faecium TC 6] gi|289565965|ref|ZP_06446404.1| dimethyladenosine transferase [Enterococcus faecium D344SRF] gi|294615973|ref|ZP_06695800.1| dimethyladenosine transferase [Enterococcus faecium E1636] gi|294617634|ref|ZP_06697262.1| dimethyladenosine transferase [Enterococcus faecium E1679] gi|260077491|gb|EEW65209.1| dimethyladenosine transferase [Enterococcus faecium TC 6] gi|289162249|gb|EFD10110.1| dimethyladenosine transferase [Enterococcus faecium D344SRF] gi|291591159|gb|EFF22841.1| dimethyladenosine transferase [Enterococcus faecium E1636] gi|291596098|gb|EFF27363.1| dimethyladenosine transferase [Enterococcus faecium E1679] Length = 294 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 152/288 (52%), Gaps = 20/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L Sbjct: 10 PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A++V+ E D + P+L D + N + I+ D LK D + F+ P++++ Sbjct: 70 KH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ +D + L ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A + F + VF P P V S ++ P ++ ++T+ AF +RRKTL + Sbjct: 185 EANLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+ G++ L AGI+ R E LS+++F ++N +++N Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292 >gi|262189700|ref|ZP_06048068.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93] gi|262034420|gb|EEY52792.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93] Length = 271 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 7/263 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETL 240 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 GI +R ENL++ F + N L Sbjct: 241 GINPGMRPENLTLAQFVALANWL 263 >gi|261209782|ref|ZP_05924087.1| dimethyladenosine transferase [Vibrio sp. RC341] gi|260841172|gb|EEX67685.1| dimethyladenosine transferase [Vibrio sp. RC341] Length = 271 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 133/263 (50%), Gaps = 7/263 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLECLDRVVREGFNQRRKTVRNCYKGLAEPETLEAL 240 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 GI +R ENL++ F + N L Sbjct: 241 GINPGMRPENLTLAQFVALANWL 263 >gi|107099578|ref|ZP_01363496.1| hypothetical protein PaerPA_01000591 [Pseudomonas aeruginosa PACS2] gi|254243686|ref|ZP_04937008.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 2192] gi|126197064|gb|EAZ61127.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa 2192] Length = 268 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + P E + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLEYA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 A ++ LR E L + F R+ N L + Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANRLAE 263 >gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 278 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 119/265 (44%), Positives = 166/265 (62%), Gaps = 4/265 (1%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L+ +++ + + K +GQNFLLD +L +IA G L TV E+G GPG LT+ LL Sbjct: 8 PLRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKA 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GA KV +E+D++ P L ++S+ P++L++I DA+++D + I+ANLPYN Sbjct: 68 GA-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVL--GEHVHIVANLPYN 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +GT LL W++A TW P+W SLTL+FQKEV ERITA+ +PHYGRLSVL WR++A + F Sbjct: 125 VGTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSF 184 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247 + F P PKV S V+H P P L +L+KIT AF +RRK LRQSLK + Sbjct: 185 PVHRSAFVPPPKVMSAVVHLTPKDQPEGVSLGTLEKITAAAFNQRRKMLRQSLKNIEHMM 244 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 L AGI+ R E +S+ +F I Sbjct: 245 EALELAGIDATRRPETVSVAEFIAI 269 >gi|329574115|gb|EGG55692.1| dimethyladenosine transferase [Enterococcus faecalis TX1467] Length = 295 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQAFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L G++ L +A I+++ R E LS+E+F R++N L N+ + Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDSSRRGETLSLEEFARLSNALEKNKPV 295 >gi|295401992|ref|ZP_06811954.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius C56-YS93] gi|294975994|gb|EFG51610.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius C56-YS93] Length = 295 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 23/296 (7%) Query: 1 MTMNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N + + IL Y KK +GQNFL+D NIL+KI + +G IEIG G Sbjct: 1 MNTNKDIATPGRTREILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----F 113 G LT+ L A+KV+ E DQ+ PIL+D S + N + II D LK D + F Sbjct: 61 IGALTEQLARR-AKKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEF 118 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +S I ++ANLPY + T ++ ++ + + ++ QKEV +RI+AQ + YG Sbjct: 119 TDASDIMVVANLPYYVTTPIIMKLLTDNLP---IRGIVVMLQKEVADRISAQPGTKDYGS 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231 LS+ + T+A + + VF P P V S VI I P + ++ + +F Sbjct: 176 LSIAIQYYTEAEKIMTVPRTVFIPQPNVDSAVIRLIKRKQPPVDVDDESFFFQVVRASFA 235 Query: 232 KRRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +RRKT+ +L ++ E +L + GI+ R E L++E+F ++N L + Sbjct: 236 QRRKTILNNLISNLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291 >gi|113969249|ref|YP_733042.1| dimethyladenosine transferase [Shewanella sp. MR-4] gi|123325289|sp|Q0HLT2|RSMA_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113883933|gb|ABI37985.1| dimethyladenosine transferase [Shewanella sp. MR-4] Length = 268 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V Sbjct: 6 HLGHTARKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L++ ++L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 65 VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDAEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267 >gi|121591750|ref|ZP_01678961.1| dimethyladenosine transferase [Vibrio cholerae 2740-80] gi|147673129|ref|YP_001218711.1| dimethyladenosine transferase [Vibrio cholerae O395] gi|153217221|ref|ZP_01950985.1| dimethyladenosine transferase [Vibrio cholerae 1587] gi|153803545|ref|ZP_01958131.1| dimethyladenosine transferase [Vibrio cholerae MZO-3] gi|153820212|ref|ZP_01972879.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457] gi|229507082|ref|ZP_04396588.1| dimethyladenosine transferase [Vibrio cholerae BX 330286] gi|229508763|ref|ZP_04398255.1| dimethyladenosine transferase [Vibrio cholerae B33] gi|229512627|ref|ZP_04402096.1| dimethyladenosine transferase [Vibrio cholerae TMA 21] gi|229519750|ref|ZP_04409193.1| dimethyladenosine transferase [Vibrio cholerae RC9] gi|229519987|ref|ZP_04409416.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80] gi|229525136|ref|ZP_04414541.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426] gi|229530287|ref|ZP_04419675.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)] gi|229606262|ref|YP_002876910.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236] gi|254850674|ref|ZP_05240024.1| dimethyladenosine transferase [Vibrio cholerae MO10] gi|255743826|ref|ZP_05417783.1| dimethyladenosine transferase [Vibrio cholera CIRS 101] gi|262147179|ref|ZP_06027985.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1] gi|262167593|ref|ZP_06035297.1| dimethyladenosine transferase [Vibrio cholerae RC27] gi|27151608|sp|Q9KUS2|RSMA_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732637|sp|A5F8N2|RSMA_VIBC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121546388|gb|EAX56639.1| dimethyladenosine transferase [Vibrio cholerae 2740-80] gi|124113744|gb|EAY32564.1| dimethyladenosine transferase [Vibrio cholerae 1587] gi|124120912|gb|EAY39655.1| dimethyladenosine transferase [Vibrio cholerae MZO-3] gi|126509241|gb|EAZ71835.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457] gi|146315012|gb|ABQ19551.1| dimethyladenosine transferase [Vibrio cholerae O395] gi|229332060|gb|EEN97548.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)] gi|229338717|gb|EEO03734.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426] gi|229342936|gb|EEO07925.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80] gi|229344439|gb|EEO09414.1| dimethyladenosine transferase [Vibrio cholerae RC9] gi|229350304|gb|EEO15255.1| dimethyladenosine transferase [Vibrio cholerae TMA 21] gi|229354166|gb|EEO19097.1| dimethyladenosine transferase [Vibrio cholerae B33] gi|229355827|gb|EEO20747.1| dimethyladenosine transferase [Vibrio cholerae BX 330286] gi|229368917|gb|ACQ59340.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236] gi|254846379|gb|EET24793.1| dimethyladenosine transferase [Vibrio cholerae MO10] gi|255738575|gb|EET93963.1| dimethyladenosine transferase [Vibrio cholera CIRS 101] gi|262023929|gb|EEY42626.1| dimethyladenosine transferase [Vibrio cholerae RC27] gi|262031384|gb|EEY49992.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1] gi|327483299|gb|AEA77706.1| Dimethyladenosine transferase [Vibrio cholerae LMA3894-4] Length = 271 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 7/263 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETL 240 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 GI +R ENL++ F + N L Sbjct: 241 GINPGMRPENLTLAQFVALANWL 263 >gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 124/281 (44%), Positives = 169/281 (60%), Gaps = 7/281 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + L+ +L+ + + +K +GQ+FLLDLN+ +IA ++G+L T IEIG GPG LT Sbjct: 1 MADLLPPLRDVLNAHGLTARKSLGQHFLLDLNLTGRIARAAGNLATGTTIEIGPGPGGLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL AR VI IE+D + I +I + +P RLEII DAL+V+ +P RI+ Sbjct: 61 RALLDNDARHVIAIERDDRAIAIQNEIMAAYPGRLEIIAADALEVEAATL--GEAPRRIV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYNI T LL W+ +ESLTL+FQKEV +R+ A SP YGRLSV+T W Sbjct: 119 ANLPYNISTVLLLAWL---RRIDAFESLTLMFQKEVVDRLAAAPRSPDYGRLSVITQWLC 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 +F++ F P P V STV+ IP P+ P +E+L+K+T AFG+RRK LR SL Sbjct: 176 DVRPLFNVDKRAFTPPPNVMSTVVQLIPRSQPLAPARMETLEKVTAAAFGQRRKMLRSSL 235 Query: 242 KRLGG-ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 K LG E++L GI RAE L++ FC + L Q Sbjct: 236 KSLGPVEDMLAATGIAGTARAEELTVSQFCTLAEYLDRQQP 276 >gi|238918639|ref|YP_002932153.1| dimethyladenosine transferase [Edwardsiella ictaluri 93-146] gi|238868207|gb|ACR67918.1| dimethyladenosine transferase, putative [Edwardsiella ictaluri 93-146] Length = 267 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 97/267 (36%), Positives = 139/267 (52%), Gaps = 8/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL D ++ I + L G V+EIG G G LT+ + K+ V Sbjct: 2 HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVADR-MDKMTV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134 +E D+ L +L I Q DA+ VDF + P+R+ NLPYNI T L+ Sbjct: 61 VELDRDLAERLS-THPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNISTPLM 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + QKEV R+ A +S YGRLSV+ + + + ++ P Sbjct: 120 FHLFSYASA---ISDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVVPVLEVPPSA 176 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ IPH P P + L +IT EAF +RRKT+R SL L + L Sbjct: 177 FRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSADQLSA 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 GI+ RAE LS+ D+CR+ N L ++ Sbjct: 237 LGIDPARRAETLSVADYCRLANWLCEH 263 >gi|308185629|ref|YP_003929760.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Pantoea vagans C9-1] gi|308056139|gb|ADO08311.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Pantoea vagans C9-1] Length = 273 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 139/281 (49%), Gaps = 16/281 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHYARKRFGQNFLNDQYIINSIVSAIHPQRDEALVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + K+ VIE D+ L + +L I Q DA+ DF P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARL-ETHPFLGPKLTIFQQDAMTFDFAALAQERGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + + QKEV R+ A S YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ PH F P PKV S V+ +P P + L +IT EAFG+RRKTLR Sbjct: 168 CQVIPVLEVPPHSFTPPPKVDSAVVRLVPFAEPPHPVSDVRILSRITTEAFGQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 SL + L + I+ LRAEN+S+ +C++ N L ++Q Sbjct: 228 SLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268 >gi|260554070|ref|ZP_05826333.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624] gi|260404809|gb|EEW98316.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624] Length = 270 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 137/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHKARKRFGQNFLHDQRVIAKIVRSVNPRPGDNIVEIGPGLAALTSPLIGEC-EALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + HP RL I++ DALK DF + P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPERV-PHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P Sbjct: 131 LE---FGSQVKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187 Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V +P+ ++L ++ F +RRKTLR SLK + E+ +AG+ Sbjct: 188 PPKVTSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++ +F + + Sbjct: 248 DPMARPETLTLAEFVALAD 266 >gi|117921647|ref|YP_870839.1| dimethyladenosine transferase [Shewanella sp. ANA-3] gi|166221704|sp|A0L064|RSMA_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117613979|gb|ABK49433.1| dimethyladenosine transferase [Shewanella sp. ANA-3] Length = 268 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V Sbjct: 6 HLGHTARKRFGQNFLTDDNVINRIVGAIVPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L++ ++L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 65 VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267 >gi|212711197|ref|ZP_03319325.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM 30120] gi|212686365|gb|EEB45893.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM 30120] Length = 269 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 147/279 (52%), Gaps = 16/279 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D I+ I ++ G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLTDQFIIDSIVDAMHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + K+ V+E D+ L + Q ++L IIQ DA+ VDF + PIR+ Sbjct: 53 EPVGSR-MDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPIRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNQISDMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ IPH NP P ++ L +IT +AF +RRKT+R Sbjct: 168 CNVVPVLEVPPTAFAPPPKVDSAVVRLIPHKENPYPVKDIKVLSRITTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 SL L L + GI+ RAEN+S+E +C++ N L + Sbjct: 228 SLGDLFSVEQLTELGIDPGTRAENISVEHYCKMANYLCN 266 >gi|293557287|ref|ZP_06675834.1| dimethyladenosine transferase [Enterococcus faecium E1039] gi|291600574|gb|EFF30879.1| dimethyladenosine transferase [Enterococcus faecium E1039] Length = 294 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 153/288 (53%), Gaps = 20/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++ + VIE+G G G LT+ L Sbjct: 10 PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A++V+ E D + P+L D + N + I+ D LK D + F+ P++++ Sbjct: 70 KH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ ++ + L ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESNL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S ++ P ++ ++T+ AF +RRKTL + Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+ G++ L AGI+ R E LS+++F ++N +++N Sbjct: 245 LQHSYGKDDQTKAWLAKSLGTAGIDPKRRGETLSLQEFAALSNAMSEN 292 >gi|312109189|ref|YP_003987505.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1] gi|311214290|gb|ADP72894.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1] Length = 295 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 150/296 (50%), Gaps = 23/296 (7%) Query: 1 MTMNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N + + IL Y KK +GQNFL+D NIL+KI + +G IEIG G Sbjct: 1 MNTNKDIATPGRTREILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----F 113 G LT+ L A+KV+ E DQ+ PIL+D S + N + II D LK D + F Sbjct: 61 IGALTEQLARR-AKKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEF 118 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 ++ I ++ANLPY + T ++ ++ + + ++ QKEV +RI+AQ + YG Sbjct: 119 TDAADIMVVANLPYYVTTPIIMKLLTDNLP---IRGIVVMLQKEVADRISAQPGTKDYGS 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231 LS+ + T+A + + VF P P V S VI I P + ++ + +F Sbjct: 176 LSIAIQYYTEAEKIMTVPRTVFIPQPNVDSAVIRLIKRKQPPVDVDDESFFFQVVRASFA 235 Query: 232 KRRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +RRKT+ +L ++ E +L + GI+ R E L++E+F ++N L + Sbjct: 236 QRRKTILNNLISNLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291 >gi|262371641|ref|ZP_06064920.1| dimethyladenosine transferase [Acinetobacter junii SH205] gi|262311666|gb|EEY92751.1| dimethyladenosine transferase [Acinetobacter junii SH205] Length = 270 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 94/259 (36%), Positives = 138/259 (53%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHQARKRFGQNFLHDQRVIAKIVRSVNPRAGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L HP RL I++ DALK DF + F P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPGRV-PHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA+ N+ YGRLSV+ + K T +F++ P F P Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNP 187 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V P+ ++L ++ F +RRKTLR SLK + E+ +AG+ Sbjct: 188 PPKVTSAVFRLEPYETKPIIAKNEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E LS+ DF +++ Sbjct: 248 DPMARPETLSLADFVALSD 266 >gi|90580799|ref|ZP_01236602.1| dimethyladenosine transferase [Vibrio angustum S14] gi|90438067|gb|EAS63255.1| dimethyladenosine transferase [Vibrio angustum S14] Length = 274 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G +T+ + L K V Sbjct: 7 HLGHRARKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTV 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I Q DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 66 IELDRDLAERLENH-PDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + E + + QKEV R+ A S YGRL+V+ + + + ++ P F Sbjct: 125 HIFEFHK---DVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESF 181 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L Sbjct: 182 VPAPKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEAL 241 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ R EN+++E F + N L N Sbjct: 242 GVNPGNRPENITVEQFVAMANWLDAN 267 >gi|118445093|ref|YP_879149.1| dimethyladenosine transferase [Clostridium novyi NT] gi|118135549|gb|ABK62593.1| dimethyladenosine transferase [Clostridium novyi NT] Length = 281 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 99/278 (35%), Positives = 145/278 (52%), Gaps = 13/278 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + K ++ Y K +GQNFL D N+L I S + VIEIG G G LT+ LL Sbjct: 5 TTKDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK- 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV +E D + PIL + PN E+I DALKVDF + ++++ANLPY Sbjct: 64 KAKKVCAVELDSELIPILTEELKDFPN-FELIHKDALKVDFNELIGEEKSVKVVANLPYY 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T ++ + ++SLT++ QKEV ERI ++ N YG LS+L + ++ Sbjct: 123 VTTPIIARLLKE---GYKFKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILR 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + P F P PKV S +I P E KI +++F RRKTLR ++K LG Sbjct: 180 KVPPTCFIPQPKVDSIIIKLDRLDEPRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGD 239 Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E + + AGI+ R E LSIE+F ++ + + D Sbjct: 240 VSGDHIEKVFNDAGIDPRRRGETLSIEEFGKLADSIYD 277 >gi|269137958|ref|YP_003294658.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella tarda EIB202] gi|267983618|gb|ACY83447.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella tarda EIB202] gi|304558006|gb|ADM40670.1| Dimethyladenosine transferase [Edwardsiella tarda FL6-60] Length = 267 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 98/267 (36%), Positives = 139/267 (52%), Gaps = 8/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL D ++ I + L G V+EIG G G LT+ + K+ V Sbjct: 2 HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVADR-MDKMTV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134 IE D+ L +L I Q DA+ VDF + P+R+ NLPYNI T L+ Sbjct: 61 IELDRDLAERLS-THPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNISTPLM 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + QKEV R+ A +S YGRLSV+ + + + ++ P Sbjct: 120 FHLFSYASA---IGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVPPSA 176 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ IPH P P + L +IT EAF +RRKT+R SL L + L Sbjct: 177 FRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTVRNSLGHLFSADQLSA 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 GI+ RAE LS+ D+CR+ N L ++ Sbjct: 237 LGIDPARRAETLSVADYCRLANWLCEH 263 >gi|308051068|ref|YP_003914634.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799] gi|307633258|gb|ADN77560.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799] Length = 269 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D++++ +I + + ++EIG G G LT+ + + V Sbjct: 6 HLGHRARKRFGQNFLHDMSVIDRIVAAIRPDNDHIMVEIGPGLGALTEPVADQ-VEHLNV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ + +L I + DALK DF + +++ NLPYNI T L+F Sbjct: 65 VELDRDLAERLRH-QPRWGQKLTIHEGDALKFDFNQLAEPGKRMKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + ES+ + QKEV ER+ A +YGRLSV+ + + + ++ P F Sbjct: 124 HLFET---VDSVESMHFMLQKEVVERLCAGPGHKNYGRLSVMAQYYCQCIPVLEVPPGCF 180 Query: 196 FPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +PH P P + +L+K+ AF RRKTLR + K ++ Sbjct: 181 TPPPKVDSAVVRLVPHVEKPYPATNVATLEKVVATAFTMRRKTLRNNFKGQLNDDDFAAL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 GI+ LR E +S+ ++ + N +++ Sbjct: 241 GIDPTLRPERISLPEYVAMANYISER 266 >gi|302185943|ref|ZP_07262616.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae 642] Length = 268 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFAGKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|262403931|ref|ZP_06080488.1| dimethyladenosine transferase [Vibrio sp. RC586] gi|262349893|gb|EEY99029.1| dimethyladenosine transferase [Vibrio sp. RC586] Length = 272 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 7/270 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ + P P LE L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEAL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 GI + +R ENL++ F + N L A Sbjct: 241 GINSGMRPENLTLAQFVALANWLDAQHQKA 270 >gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ZM4] gi|241761717|ref|ZP_04759804.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|62900473|sp|Q5NMX2|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ZM4] gi|241374025|gb|EER63558.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 278 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 119/265 (44%), Positives = 166/265 (62%), Gaps = 4/265 (1%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L+ +++ + + K +GQNFLLD +L +IA G L TV E+G GPG LT+ LL Sbjct: 8 PLRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKA 67 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GA KV +E+D++ P L ++S+ P++L++I DA+++D + I+ANLPYN Sbjct: 68 GA-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVL--GEHVHIVANLPYN 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +GT LL W++A TW P+W SLTL+FQKEV ERITA+ +PHYGRLSVL WR++A + F Sbjct: 125 VGTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSF 184 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247 + F P PKV S V+H P P L +L+KIT AF +RRK LRQSLK + Sbjct: 185 PVHRSAFVPPPKVMSAVVHLTPKDQPEGLSLGTLEKITAAAFNQRRKMLRQSLKNIEHMM 244 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 L AGI+ R E +S+ +F I Sbjct: 245 EALELAGIDATRRPETVSVAEFIAI 269 >gi|169634292|ref|YP_001708028.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii SDF] gi|169794673|ref|YP_001712466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii AYE] gi|184159517|ref|YP_001847856.1| dimethyladenosine transferase [Acinetobacter baumannii ACICU] gi|213157955|ref|YP_002320753.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057] gi|239504128|ref|ZP_04663438.1| dimethyladenosine transferase [Acinetobacter baumannii AB900] gi|260558120|ref|ZP_05830330.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606] gi|301345850|ref|ZP_07226591.1| dimethyladenosine transferase [Acinetobacter baumannii AB056] gi|301512166|ref|ZP_07237403.1| dimethyladenosine transferase [Acinetobacter baumannii AB058] gi|301595546|ref|ZP_07240554.1| dimethyladenosine transferase [Acinetobacter baumannii AB059] gi|332851556|ref|ZP_08433533.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150] gi|332867755|ref|ZP_08437827.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113] gi|332873490|ref|ZP_08441441.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059] gi|169147600|emb|CAM85461.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii AYE] gi|169153084|emb|CAP02154.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter baumannii] gi|183211111|gb|ACC58509.1| Dimethyladenosine transferase (rRNA methylation) [Acinetobacter baumannii ACICU] gi|193078414|gb|ABO13399.2| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC 17978] gi|213057115|gb|ACJ42017.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057] gi|260408393|gb|EEX01701.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606] gi|322509429|gb|ADX04883.1| dimethyladenosine transferase [Acinetobacter baumannii 1656-2] gi|323519450|gb|ADX93831.1| dimethyladenosine transferase [Acinetobacter baumannii TCDC-AB0715] gi|332729901|gb|EGJ61233.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150] gi|332733761|gb|EGJ64913.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113] gi|332738315|gb|EGJ69191.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059] Length = 270 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 137/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHKARKRFGQNFLHDQRVIAKIVRSVNPRTGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + HP RL I++ DALK DF + P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPERV-PHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P Sbjct: 131 LE---FGSQVKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V +P+ ++L ++ F +RRKTLR SLK + E+ +AG+ Sbjct: 188 PPKVTSAVFRLVPYEQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++ +F + + Sbjct: 248 DPMARPETLTLAEFVALAD 266 >gi|329890126|ref|ZP_08268469.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568] gi|328845427|gb|EGF94991.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568] Length = 268 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 119/278 (42%), Positives = 168/278 (60%), Gaps = 11/278 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT+ SL+ L + + KK GQ+FLLDLN+ +KI +G DG VIE+G GPG Sbjct: 1 MTL----PSLRETLDAHGLSAKKSFGQHFLLDLNVTRKIVRYAGPFDGRAVIEVGPGPGG 56 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL A KV+++EKD +F P+L ++ RL I++ DALKV + + P Sbjct: 57 LTRALLESDAGKVVLVEKDPRFIPLLSEL-DDGSGRLTIVEADALKVKEAEL--VEGPAH 113 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +++NLPYN+GT LL W++ P +LTL+FQKEV ER+ AQ YGRL+V++ Sbjct: 114 LVSNLPYNVGTPLLIKWLTGPWTP---CALTLMFQKEVAERVVAQPGEDAYGRLAVISQA 170 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQ 239 +A ++ + F P PKV S V+H IP P P L+ L+++T AFG+RRK LR Sbjct: 171 VAEARIVMHLPAAAFTPPPKVASAVVHLIPLAERPAPDRLKRLERVTAAAFGQRRKMLRS 230 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK+LGG L AGIE + RAE + + F R+ + LT Sbjct: 231 SLKQLGGAALCEAAGIEPDARAETIDVAGFLRLADALT 268 >gi|117618457|ref|YP_855484.1| dimethyladenosine transferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166221642|sp|A0KGT8|RSMA_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117559864|gb|ABK36812.1| dimethyladenosine transferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 271 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 94/268 (35%), Positives = 138/268 (51%), Gaps = 8/268 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ +I + G ++EIG G LT+ + K+ V Sbjct: 7 HMGHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVA-SQMDKMTV 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134 +E D+ L++ +L +I+ DA++ DF P+RI NLPYNI T L+ Sbjct: 66 VELDRDLAARLREH-PTLKEKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNISTPLI 124 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + E + + QKEV R+ A S YGRLSV+T + + + ++ P Sbjct: 125 FHLCE---FADRVEDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEVGPGA 181 Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ IPH NP + + L ++ E FG+RRKT+R S + L + Sbjct: 182 FKPAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDAQLTE 241 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR ENLS+E F I N L D Q Sbjct: 242 LGIDGNLRPENLSLEQFVMIANWLADQQ 269 >gi|294634975|ref|ZP_06713492.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685] gi|291091574|gb|EFE24135.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685] Length = 271 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 95/270 (35%), Positives = 137/270 (50%), Gaps = 8/270 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL D ++ I + G V+EIG G G LT+ + K+ V Sbjct: 6 HQGHLARKRFGQNFLTDQFVIDSIVSAINPQPGQAVVEIGPGLGALTEPVADR-MDKMTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLL 134 IE D+ L +L I Q DA+ VDF E P+R+ NLPYNI T L+ Sbjct: 65 IELDRDLAERLS-THPFISRKLTIRQQDAMSVDFGEMAREAGQPLRVFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + QKEV R+ A +S YGRLSV+ + + + ++ P Sbjct: 124 FHLFSYASA---IGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVPPSA 180 Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ IPH + L +IT EAF +RRKT+R SL L L + Sbjct: 181 FRPAPKVDSAVVRLIPHRELPHSVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSAEQLSE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDI 282 GI+ RAE LS+ ++CR+ N L ++ + Sbjct: 241 LGIDPARRAETLSVAEYCRLANWLCEHPPV 270 >gi|291616236|ref|YP_003518978.1| KsgA [Pantoea ananatis LMG 20103] gi|291151266|gb|ADD75850.1| KsgA [Pantoea ananatis LMG 20103] gi|327392687|dbj|BAK10109.1| Dimethyladenosine transferase KsgA [Pantoea ananatis AJ13355] Length = 273 Score = 299 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 16/282 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQRDQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + V+E D+ L+ +L I Q DA+ DF P+R+ Sbjct: 53 EPVGERL-DSLTVVELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFAALAKEKGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + + QKEV R+ A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ PH F P PKV S V+ +P++ P + L +IT EAFG+RRKTLR Sbjct: 168 CQVIPVLEVPPHSFTPPPKVDSAVVRLVPYMTPPHPVKDVRILSRITTEAFGQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL + L + I+T+LRAEN+S+ +C++ N L D+ D Sbjct: 228 SLSHMVVAGALDELEIDTSLRAENVSVAQYCQLANWLADHLD 269 >gi|291520367|emb|CBK75588.1| dimethyladenosine transferase [Butyrivibrio fibrisolvens 16/4] Length = 284 Score = 299 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 148/288 (51%), Gaps = 15/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K +L + +K GQNFL+D N+L I +++G V+EIG G G Sbjct: 1 MAYLSNPTYTKAVLEAHGFSFQKKYGQNFLIDGNVLDNIIDAAGITKDDFVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 +TQ L AR+V+ +E D+ PIL D S + N +I D LKVD + + Sbjct: 61 MTQRLCEE-AREVVAVEIDKTLIPILDDTLSTYKNW-TVINQDILKVDIKALADEKNGGK 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ + ES+T++ QKEV +R+ S YG LS+ Sbjct: 119 PIKVVANLPYYITTPIIMGLFESHVP---LESITIMVQKEVADRMQEGPGSKEYGALSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKT 236 + + ++ ++ P F P PKV STVI H P C E L +I + +F +RRKT Sbjct: 176 VQYYSNPEIVCEVPPSCFMPQPKVASTVITLKCHEKPPVECDEKLLFQIIRASFNQRRKT 235 Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ L + + +AG +R E LS+E+F ++TNIL + Sbjct: 236 LQNGLGNGLHYSKEQIAEAISKAGYSPTIRGEALSLEEFAKLTNILKE 283 >gi|152987663|ref|YP_001346131.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7] gi|150962821|gb|ABR84846.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7] Length = 268 Score = 299 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 95/268 (35%), Positives = 141/268 (52%), Gaps = 7/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE DQ P+LK P R + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VIELDQDLIPLLKLKFGLEP-RFSLHQGDALKFDFASLVESDEKLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + P E + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 A ++ LR E L + F R+ N L + Q Sbjct: 238 AAVDPTLRPEQLDLAAFVRLANRLAELQ 265 >gi|22127557|ref|NP_670980.1| dimethyladenosine transferase [Yersinia pestis KIM 10] gi|45443419|ref|NP_994958.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str. 91001] gi|108810076|ref|YP_653992.1| dimethyladenosine transferase [Yersinia pestis Antiqua] gi|108810531|ref|YP_646298.1| dimethyladenosine transferase [Yersinia pestis Nepal516] gi|145600397|ref|YP_001164473.1| dimethyladenosine transferase [Yersinia pestis Pestoides F] gi|150260471|ref|ZP_01917199.1| dimethyladenosine transferase [Yersinia pestis CA88-4125] gi|162421183|ref|YP_001605347.1| dimethyladenosine transferase [Yersinia pestis Angola] gi|165928081|ref|ZP_02223913.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937777|ref|ZP_02226338.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. IP275] gi|166008750|ref|ZP_02229648.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212108|ref|ZP_02238143.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401583|ref|ZP_02307077.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422020|ref|ZP_02313773.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426031|ref|ZP_02317784.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927690|ref|YP_002345565.1| dimethyladenosine transferase [Yersinia pestis CO92] gi|229836925|ref|ZP_04457090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Pestoides A] gi|229840380|ref|ZP_04460539.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842460|ref|ZP_04462615.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229900719|ref|ZP_04515843.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Nepal516] gi|270487910|ref|ZP_06204984.1| dimethyladenosine transferase [Yersinia pestis KIM D27] gi|294502587|ref|YP_003566649.1| dimethyladenosine transferase [Yersinia pestis Z176003] gi|27151586|sp|Q8ZIK5|RSMA_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600905|sp|Q1C0H5|RSMA_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600906|sp|Q1CMT2|RSMA_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221716|sp|A4TQD8|RSMA_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732644|sp|A9QZZ0|RSMA_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21960661|gb|AAM87231.1|AE013971_7 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis KIM 10] gi|45438288|gb|AAS63835.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str. 91001] gi|108774179|gb|ABG16698.1| dimethyladenosine transferase [Yersinia pestis Nepal516] gi|108781989|gb|ABG16047.1| dimethyladenosine transferase [Yersinia pestis Antiqua] gi|115346301|emb|CAL19172.1| dimethyladenosine transferase [Yersinia pestis CO92] gi|145212093|gb|ABP41500.1| dimethyladenosine transferase [Yersinia pestis Pestoides F] gi|149289879|gb|EDM39956.1| dimethyladenosine transferase [Yersinia pestis CA88-4125] gi|162353998|gb|ABX87946.1| dimethyladenosine transferase [Yersinia pestis Angola] gi|165914189|gb|EDR32805.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. IP275] gi|165919942|gb|EDR37243.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992089|gb|EDR44390.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206854|gb|EDR51334.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960157|gb|EDR56178.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048965|gb|EDR60373.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054954|gb|EDR64754.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682058|gb|EEO78150.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Nepal516] gi|229690770|gb|EEO82824.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696746|gb|EEO86793.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705868|gb|EEO91877.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Yersinia pestis Pestoides A] gi|262360617|gb|ACY57338.1| dimethyladenosine transferase [Yersinia pestis D106004] gi|262364563|gb|ACY61120.1| dimethyladenosine transferase [Yersinia pestis D182038] gi|270336414|gb|EFA47191.1| dimethyladenosine transferase [Yersinia pestis KIM D27] gi|294353046|gb|ADE63387.1| dimethyladenosine transferase [Yersinia pestis Z176003] gi|320016863|gb|ADW00435.1| dimethyladenosine transferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 272 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + VIE D+ L Q ++L I Q DA+KV+F + P+R+ Sbjct: 53 EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFSELSEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKTYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ IPH+ P P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 228 SLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|330891196|gb|EGH23857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. mori str. 301020] Length = 268 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|172056080|ref|YP_001812540.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15] gi|171988601|gb|ACB59523.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15] Length = 292 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 154/291 (52%), Gaps = 20/291 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M H K IL+ + KK +GQNFL+DLN+L I ++ V+EIG G G+ Sbjct: 1 MKDIATLHRTKEILAKHGFSFKKSLGQNFLIDLNVLGNIVGAANLTPDSGVLEIGPGIGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116 LT+ A+KV+ +E DQ+ PIL+D + +P+ +++I DAL++D E + Sbjct: 61 LTEQSAKQ-AKKVVALEIDQRLLPILEDSLAPYPH-VKVIHGDALELDLETIVDEEFTQQ 118 Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 + + ++ANLPY + T ++ + A T + +L ++ QKEV ERI AQ + YG L Sbjct: 119 GITDLAVVANLPYYVTTPIIMRILEARTP---FRTLIMMIQKEVAERIGAQPGTKAYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232 S+ + +A + F + VF P+P V S VI P + ++T+ +F + Sbjct: 176 SIAIQYYAEAEVCFTVPKQVFIPAPNVDSAVIRLNIRKEPAVKTLDEKLFFEVTRASFAQ 235 Query: 233 RRKTLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKT+ +L G E LH+AGI+ R E LS+++F ++ + L Sbjct: 236 RRKTILNNLSSHFGKAEKEAVEAALHEAGIDPRRRGETLSLQEFAQLADAL 286 >gi|221234694|ref|YP_002517130.1| dimethyladenosine transferase [Caulobacter crescentus NA1000] gi|220963866|gb|ACL95222.1| dimethyladenosine transferase [Caulobacter crescentus NA1000] Length = 281 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 112/276 (40%), Positives = 168/276 (60%), Gaps = 8/276 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ L + ++ +K GQ+FLLDLN+ +KIA + +G TV+E+G GPG Sbjct: 6 MSLAD-LPPLREALERHDLMARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGG 64 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD +F P+L +++ RLE+++ DALKVD + P Sbjct: 65 LTRALLETGAR-VVAIEKDSRFLPLLAEVAEVAEGRLELVEGDALKVDAAQAA--GGPAH 121 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +++NLPYN+GT+LL NW++ P S+TL+FQKEV +RI AQ YGRL+V+ Sbjct: 122 VVSNLPYNVGTQLLINWLTGPFRP---LSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQT 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ 239 +A + D+ F P PKV S V+ +P P P + +L+++T AFG+RRK LR Sbjct: 179 LCEARTVMDLPAKAFTPPPKVASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRS 238 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 SLK LGG +L +AG+ + RAE + + F + Sbjct: 239 SLKALGGADLCERAGVSPDARAEVIDLAGFLDLARA 274 >gi|312883920|ref|ZP_07743637.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368378|gb|EFP95913.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 268 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 7/263 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ +L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLGEKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPSAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ P+ + P P L+ L ++ +E F +RRKT+R K L ++L + Sbjct: 181 VPPPKVDSAVVRLTPYEDLPHPVADLKWLDRVCREGFNQRRKTVRNCYKGLLDTDVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 GI ++R ENL++E F + N L Sbjct: 241 GINPSMRPENLTLEQFVSMANWL 263 >gi|157368969|ref|YP_001476958.1| dimethyladenosine transferase [Serratia proteamaculans 568] gi|166987697|sp|A8G9P0|RSMA_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157320733|gb|ABV39830.1| dimethyladenosine transferase [Serratia proteamaculans 568] Length = 272 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 100/280 (35%), Positives = 146/280 (52%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNKVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + R + VIE D+ L + Q ++L I Q DA+ V+F + P+R+ Sbjct: 53 EPVGARMDR-MTVIELDRDLAARLANH-PQLKDKLTIHQQDAMTVNFAEMAEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ +PH +NP P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTSFTPAPKVDSAVVRLVPHLVNPNPVGDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L + GI+ LRAEN+S+ +C++ N L+ N Sbjct: 228 SLGDLFTPEQLTELGIDPILRAENISVAQYCKLANWLSAN 267 >gi|289676165|ref|ZP_06497055.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae FF5] Length = 268 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|89101161|ref|ZP_01173994.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911] gi|89084129|gb|EAR63297.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911] Length = 293 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 142/285 (49%), Gaps = 20/285 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL Y KK +GQNFL+D NIL +I + + +G IEIG G G LT+ L Sbjct: 11 TRAILEKYGFSFKKSLGQNFLIDTNILNRIVDHAELREGSGAIEIGPGIGALTEQLAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 + KV+ E DQ+ PILK+ + +PN E+I D LK D E+ F + ++ANL Sbjct: 70 SEKVVAFEIDQRLLPILKETLAPYPNA-EVIHQDVLKADVKTTIEERFAPGQDLMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + QKEV +RI+A+ S YG LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEEKLP---IRGIVCMLQKEVADRISAKPGSKDYGSLSIAVQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI P + ++T+ +F +RRKT+ +L Sbjct: 186 TVMIVPKTVFVPQPNVDSAVIRLTRREQPPVLVKDEAFFFQVTKASFAQRRKTILNNLTS 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K+ L AGIE + R E LSI +F R+++ L + Sbjct: 246 QLHEGKQKKEAILAALETAGIEPSRRGETLSIGEFGRLSDELYPH 290 >gi|83591771|ref|YP_425523.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170] gi|119365056|sp|Q2RXA9|RSMA_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83574685|gb|ABC21236.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170] Length = 288 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 114/270 (42%), Positives = 166/270 (61%), Gaps = 7/270 (2%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T + L+ +++ + + ++ +GQNFL DLN+ +IA + G +D TVIEIG GPG L Sbjct: 11 TPGDGLPPLREVIATHGLDARRSLGQNFLFDLNLTGRIARAGGEIDQGTVIEIGPGPGGL 70 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 T+ LL GAR+VI IE+D + +L +I++ P RLE I+ DAL +D +P R+ Sbjct: 71 TRALLGAGARRVIAIERDSRCRGVLAEIAAVWPGRLETIEGDALDIDVAAL--GEAPRRV 128 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPYN+ T LL W+ + +E L+FQKEV +R+ A+ + YGRLSV+T W Sbjct: 129 IANLPYNVATPLLIGWLRHASA---FERFVLMFQKEVVDRLAARPGTKDYGRLSVITQWL 185 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQS 240 + +FD++P F P PKV STV+ P P+ P +E+L+++T AFG+RRK LR S Sbjct: 186 CEVRPLFDVNPRAFTPPPKVVSTVVRIDPRPQPLAPARMETLERVTAAAFGQRRKMLRAS 245 Query: 241 LKRLGGENLL-HQAGIETNLRAENLSIEDF 269 LK LG L AG++ RAE + +E F Sbjct: 246 LKALGDAEGLCAAAGLDPTARAETIPVEGF 275 >gi|71735918|ref|YP_272932.1| dimethyladenosine transferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483106|ref|ZP_05637147.1| dimethyladenosine transferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|118600884|sp|Q48NT7|RSMA_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71556471|gb|AAZ35682.1| dimethyladenosine transferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326009|gb|EFW82067.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea str. B076] gi|320332056|gb|EFW87992.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881716|gb|EGH15865.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330985796|gb|EGH83899.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011661|gb|EGH91717.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 268 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|330970842|gb|EGH70908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 268 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|330830999|ref|YP_004393951.1| ribosomal RNA small subunit methyltransferase A [Aeromonas veronii B565] gi|328806135|gb|AEB51334.1| Ribosomal RNA small subunit methyltransferase A [Aeromonas veronii B565] Length = 264 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 138/266 (51%), Gaps = 8/266 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ +I + G ++EIG G LT+ + K+ V+E Sbjct: 2 GHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVAAQ-MDKMTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFN 136 D+ L++ ++L +I+ DA++ DF P+RI NLPYNI T L+F+ Sbjct: 61 LDRDLAARLREH-PTLKDKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNISTPLIFH 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + E + + QKEV R+ A S YGRLSV+T + + + ++ P F Sbjct: 120 LCE---FADRVEDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEVGPGAFK 176 Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+PKV S V+ IPH NP + + L ++ E FG+RRKT+R S + L + G Sbjct: 177 PAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDAQLTELG 236 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 I+ NLR ENLS+E F I N L D Q Sbjct: 237 IDGNLRPENLSLEQFVMIANWLADQQ 262 >gi|24375138|ref|NP_719181.1| dimethyladenosine transferase [Shewanella oneidensis MR-1] gi|33516936|sp|Q8EB93|RSMA_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24349908|gb|AAN56625.1|AE015799_12 dimethyladenosine transferase [Shewanella oneidensis MR-1] Length = 268 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D N++ +I + + ++EIG G G LT+ + T + V Sbjct: 6 HLGHTARKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L++ ++L I Q DAL+ DF + +++ NLPYNI T L+F Sbjct: 65 VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E++ + QKEV R++A + YGRL+V+ + + + ++ PH F Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYFCQVVPVLEVPPHSF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P PC + L+++ AF RRKTLR +LK++ + Q Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ NLR E +S+E + + N++ D Q Sbjct: 241 GIDQNLRPEQISVEQYVAMANMVCDKQ 267 >gi|51594984|ref|YP_069175.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP 32953] gi|153948384|ref|YP_001402399.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP 31758] gi|170025788|ref|YP_001722293.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII] gi|186893985|ref|YP_001871097.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+] gi|62900509|sp|Q66EQ8|RSMA_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166987698|sp|A7FMC1|RSMA_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732643|sp|B2K487|RSMA_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732645|sp|B1JKY3|RSMA_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51588266|emb|CAH19873.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance [Yersinia pseudotuberculosis IP 32953] gi|152959879|gb|ABS47340.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP 31758] gi|169752322|gb|ACA69840.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII] gi|186697011|gb|ACC87640.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+] Length = 272 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + VIE D+ L Q ++L I Q DA+KV+F + P+R+ Sbjct: 53 EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFSELSEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ IPH+ P P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 228 SLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|329296587|ref|ZP_08253923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Plautia stali symbiont] Length = 274 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 137/281 (48%), Gaps = 16/281 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I+ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQKGEAMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + V+E D+ L+ +L I Q DA+ DF P+R+ Sbjct: 53 EPVGERL-DALTVVELDRDLAARLQ-THPFLGPKLTIYQQDAMTFDFSALSKEQGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + + QKEV + A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNHLVACPGSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +P P + L +IT EAFG+RRKTLR Sbjct: 168 CQVIPVLEVPPQSFTPPPKVDSAVVRLLPFTQPPYPVSDVRLLGRITTEAFGQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 SL L L + I+ +LRAEN+++ +C++ N L +Q Sbjct: 228 SLGHLFTAGALDELNIDASLRAENVTVAQYCQLANWLGHHQ 268 >gi|298485300|ref|ZP_07003392.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160150|gb|EFI01179.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 268 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|240949660|ref|ZP_04753995.1| dimethyladenosine transferase [Actinobacillus minor NM305] gi|240295918|gb|EER46594.1| dimethyladenosine transferase [Actinobacillus minor NM305] Length = 289 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 150/289 (51%), Gaps = 19/289 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N H +K GQNFL D+N++ I + +G ++EIG G G Sbjct: 1 MSHINSK-------KHLGHTARKRFGQNFLHDMNVIHGIVSAINPRNGQYLLEIGPGLGA 53 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----I 115 LT+ + L K+ V+E D+ L+ ++L II+ DAL+ +F ++F Sbjct: 54 LTEPVAEL-VDKLTVVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLDLKE 111 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 + +R+ NLPYNI T L+F+ + + + QKEV +R+ A NS YGRL+ Sbjct: 112 NEGVRVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLT 168 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKR 233 ++ + + + ++ P F P+PKV S V+ +PH P P + L ++T +AF +R Sbjct: 169 IMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKQIPHPVKDVYWLNRVTTQAFNQR 228 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 RKTLR +L L L GI+ N RAENLSI D+ R+ N L DN + Sbjct: 229 RKTLRNALSTLFSAEQLEALGIDLNARAENLSIADYARLANWLCDNPPL 277 >gi|294012542|ref|YP_003546002.1| dimethyladenosine transferase [Sphingobium japonicum UT26S] gi|292675872|dbj|BAI97390.1| dimethyladenosine transferase [Sphingobium japonicum UT26S] Length = 280 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 113/273 (41%), Positives = 164/273 (60%), Gaps = 5/273 (1%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K L+ +++ + + K +GQNFLLD +L +IA G L+G E+G GPG LT+ + Sbjct: 8 KLPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGPGPGGLTRAI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L GA K++ +E+D++ P L ++ + P +L ++ DA++VD IIANL Sbjct: 68 LRAGA-KLVAVERDRRCLPALAELDAAFPGQLRVLSGDAMEVDAR--AEAGEGAHIIANL 124 Query: 126 PYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 PYN+GT LL W+SA+ P P+W +LTL+FQ EV ERI A+ HYGRL+VL+ WR+ A Sbjct: 125 PYNVGTALLIGWLSAEWSPLPWWSTLTLMFQMEVAERIVAKPGGDHYGRLAVLSQWRSDA 184 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + + F P PKV S V+H P P L+ L+++T AFG+RRK LRQSLK L Sbjct: 185 RIAMKVHRSAFTPPPKVMSAVVHITPRPAPEGVQLKHLERLTATAFGQRRKMLRQSLKGL 244 Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G L GI+ RAE +S+E+F + +L Sbjct: 245 PGALEALEAVGIDPQRRAETVSVEEFVEVARVL 277 >gi|70732937|ref|YP_262708.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5] gi|118600886|sp|Q4K4X5|RSMA_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68347236|gb|AAY94842.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5] Length = 270 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 137/267 (51%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I S + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRMLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + N + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLGAAPGSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH L++I +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 AG++ +LR E L + F R+ + L D Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQ 264 >gi|66047854|ref|YP_237695.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae B728a] gi|75500351|sp|Q4ZMG5|RSMA_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|63258561|gb|AAY39657.1| RRNA 16S rRNA dimethylase [Pseudomonas syringae pv. syringae B728a] Length = 268 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGADPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|157374103|ref|YP_001472703.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3] gi|189028819|sp|A8FRV2|RSMA_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157316477|gb|ABV35575.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3] Length = 267 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 148/280 (52%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDGNVINRIVGAIAPDNDHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + G K+ V+E D+ LK+ ++L+I Q DALK DF + +++ Sbjct: 53 EPVA-NGIDKLTVVELDKDLVERLKEH-PTLKHKLDIHQGDALKFDFSQLVEEGRQMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ PH F P+PKV S V+ +P+ P PC ++ L+ +T AF RRKTLR + Sbjct: 168 QVMPVLEVPPHSFTPAPKVDSAVVRLVPYKTKPWPCKDVDQLRHLTTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + + GI+ LR E ++++ + + N++ D + Sbjct: 228 LKHMISDEEFAALGIDATLRPEQITVQQYVAMANLVIDKK 267 >gi|327479273|gb|AEA82583.1| dimethyladenosine transferase [Pseudomonas stutzeri DSM 4166] Length = 264 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 94/268 (35%), Positives = 148/268 (55%), Gaps = 7/268 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + G ++EIG G G LT+ LL GA + Sbjct: 1 MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLDSGAH-L 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 V+E D PIL+ ++ N + Q DALK DF + + +RI+ NLPYNI T L Sbjct: 60 DVVELDLDLIPILQSRFAERSN-FALHQGDALKFDFAQLSREPASLRIVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + QKEV ER+ AQ +GRLS++ + + +F++ P Sbjct: 119 IFHLLEHAG---LIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK L + Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDGEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 AG++ +LR E L + F R+++ LT+ Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTER 263 >gi|89075559|ref|ZP_01161964.1| dimethyladenosine transferase [Photobacterium sp. SKA34] gi|89048699|gb|EAR54271.1| dimethyladenosine transferase [Photobacterium sp. SKA34] Length = 274 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G +T+ + L K V Sbjct: 7 HLGHRARKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTV 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I Q DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 66 IELDRDLAERLENH-PDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + E + + QKEV R+ A S YGRL+V+ + + + ++ P F Sbjct: 125 HIFEFHK---DVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESF 181 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L Sbjct: 182 VPAPKVDSAVVRLTPYEVLPFPCTNLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEAL 241 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ R EN+++E F + N L N Sbjct: 242 GVNPGHRPENITVEQFVAMANWLDAN 267 >gi|125974582|ref|YP_001038492.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405] gi|256004056|ref|ZP_05429041.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360] gi|281419107|ref|ZP_06250124.1| dimethyladenosine transferase [Clostridium thermocellum JW20] gi|125714807|gb|ABN53299.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405] gi|255991979|gb|EEU02076.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360] gi|281407256|gb|EFB37517.1| dimethyladenosine transferase [Clostridium thermocellum JW20] gi|316941700|gb|ADU75734.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313] Length = 284 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K ++ Y + K +GQNFL+D NI+K+I + + + VIEIG G G++T L Sbjct: 5 TKKLIQKYNLKLTKSLGQNFLIDDNIVKRIVDVAEITEKDLVIEIGPGVGSMTVELAKR- 63 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A KV+ +E D++ P L+D + N ++II D + V+ +F S ++++ANLPY I Sbjct: 64 AGKVVAVEIDKRLIPALEDNLGEFSN-VDIINKDIMDVNINEFRGESGNVKVVANLPYYI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + + + + + QKEV +R+ A YG LSV + TK FD Sbjct: 123 TTPIIMKLLEENN--DNIDIMVFMVQKEVAQRMVASPGKKDYGALSVAVQYYTKPEKAFD 180 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 + PH F P P+V STVI + P + + + AFG+RRKTL +L Sbjct: 181 VPPHCFVPQPEVDSTVIKLKVNETPPVKLMDKDYFFTVVKAAFGQRRKTLVNALHNFKAL 240 Query: 247 -------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + +L + GI+ N R E LSI F ++N+L + I Sbjct: 241 GKSKEEIKEILKKLGIDENARGETLSITQFAELSNLLFRSSQI 283 >gi|332160258|ref|YP_004296835.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664488|gb|ADZ41132.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863032|emb|CBX73164.1| dimethyladenosine transferase [Yersinia enterocolitica W22703] Length = 272 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + VIE D+ L Q ++L I Q+DA+K++F + + P+R+ Sbjct: 53 EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAELAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTSA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ IPH+N P P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 228 SLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|291533505|emb|CBL06618.1| dimethyladenosine transferase [Megamonas hypermegale ART12/1] Length = 287 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 14/283 (4%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ NK + + IL + I K +GQNFL+D NI++ I +++ + V+EIG G G L Sbjct: 5 TIANKKVT-RYILQRFGIHMSKRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTL 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 TQ L GA +V +E D++ +L + N + +IQ D LKV+ + P ++ Sbjct: 64 TQALAETGA-EVTCVELDKRLPEVLAHTLDAYDN-VRVIQGDILKVNIPEIMG-DKPFKV 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + + ++ QKEV ER+ AQ YG LSV + Sbjct: 121 VANLPYYITTPIIMALLEKHLP---ITDIVVMVQKEVAERMAAQPGGKTYGALSVAVQYY 177 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQ 239 T + + P F P P+V S V++ P + ++ + AFG+RRKTL Sbjct: 178 TVPEIALYVPPRSFMPPPEVDSVVVNCKVRQTPAVELIDEKMFFRVVKAAFGQRRKTLNN 237 Query: 240 SLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK +G + ++L +AGIE R E L++E+F I NIL Sbjct: 238 ALKSMGVDKNIIADVLDKAGIEATRRGETLTMEEFGAIANILA 280 >gi|289649007|ref|ZP_06480350.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi str. 2250] Length = 268 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|255527800|ref|ZP_05394651.1| dimethyladenosine transferase [Clostridium carboxidivorans P7] gi|255508513|gb|EET84902.1| dimethyladenosine transferase [Clostridium carboxidivorans P7] Length = 278 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 146/279 (52%), Gaps = 12/279 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S K I+ Y K +GQNFL+D ++L+ I ++S VIEIG G G LT+ LL Sbjct: 5 STKDIVKKYGFKFSKSLGQNFLIDNSVLQDIVDNSNVSKDDLVIEIGPGVGTLTKELLK- 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV IE D PIL + + N E++ DALKVDF + +++ANLPY Sbjct: 64 KAKKVYAIELDSDLIPILNEELKEF-NNFELVHKDALKVDFNELIGEEKSTKVVANLPYY 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T ++ + + +ESLT++ QKEVGERI A+ ++ YG LS+L + ++ Sbjct: 123 VTTPIISKLLKENYK---FESLTIMIQKEVGERIAAKPSTKEYGALSILVQYYCDVEIVR 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG- 245 +S F P PKV S VI L P E K+ + +F RRKTL LK LG Sbjct: 180 KVSCDSFVPRPKVDSIVIKLTKLLEPKVKVKSKELFFKVVRSSFNMRRKTLWNGLKSLGM 239 Query: 246 ----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 E A I+ R E LS+E+F ++++ + + Q Sbjct: 240 KKESLEKAFIDANIDLKRRGETLSLEEFAKLSDCIYELQ 278 >gi|194017982|ref|ZP_03056589.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061] gi|194010319|gb|EDW19894.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061] Length = 292 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL +I + + D VIEIG G G LT+ L Sbjct: 11 TKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV E DQ+ PIL D S + N + II D LK D E+ F + ++ANL Sbjct: 70 AKKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + + ++ QKEV +R+ A +S Y LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVADRMAAVPSSKEYNSLSIAVQYYTEAK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI P E ++ + +FG+RRKTL +L Sbjct: 186 TVMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ E L A I+ R E+LSIE+F R+ N+L Sbjct: 246 NLPDGKQHKVIIEEALQTADIDGKRRGESLSIEEFARLANVLQ 288 >gi|163802665|ref|ZP_02196556.1| dimethyladenosine transferase [Vibrio sp. AND4] gi|159173553|gb|EDP58373.1| dimethyladenosine transferase [Vibrio sp. AND4] Length = 270 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + L G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFSQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYFCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ L L+++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLMPYDVLPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ ++R ENL+++ F + N L DN Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266 >gi|323493620|ref|ZP_08098741.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio brasiliensis LMG 20546] gi|323312143|gb|EGA65286.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio brasiliensis LMG 20546] Length = 268 Score = 297 bits (762), Expect = 8e-79, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ N P P L+ L ++ +E F +RRKT+R K L L + Sbjct: 181 VPPPKVDSAVVRLVPYENLPHPATSLKWLDRVCREGFNQRRKTVRNCYKALLSTETLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 G+ +R ENL++E F + N L N Sbjct: 241 GVNPGMRPENLTLEQFVAMANWLDANH 267 >gi|226325806|ref|ZP_03801324.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758] gi|225205930|gb|EEG88284.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758] Length = 294 Score = 297 bits (762), Expect = 8e-79, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 152/293 (51%), Gaps = 19/293 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ IL Y +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTI-EILQKYNFNFQKKFGQNFLIDEHVLDKIIRAAEITKDDYVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V +E D+ PIL+D ++ N + II +D LKVD N P Sbjct: 64 TQYLAC-AAREVTAVEIDRALIPILEDTLKEYDN-VSIINEDILKVDIAALAKEKNGGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---LESITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI H P + + ++ + +F +RRKT Sbjct: 179 QYYAEPYIVANVPPNCFMPRPAVGSAVIRLTRHQKPPVEVMDEKLMFRLIRASFNQRRKT 238 Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L LK G NL + + G +++R E L +E+F R+TNI+ + + Sbjct: 239 LANGLKNSGELNLSKEVITAAIEKLGKGSSVRGEALDLEEFARLTNIIKEEME 291 >gi|256960062|ref|ZP_05564233.1| dimethyladenosine transferase [Enterococcus faecalis Merz96] gi|256950558|gb|EEU67190.1| dimethyladenosine transferase [Enterococcus faecalis Merz96] Length = 292 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 20/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + KK +GQNFL + NIL+KI E++G V+E+G G G LT+ L Sbjct: 10 PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D + P+L D S++ N + ++ D LK D + F PI+++ Sbjct: 70 MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + ++ QKEV +RI A+ + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P P V S +I P + K+T+ +F RRKTL + Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILT 277 L G++ L +A I+ + R E LS+E+F R++N L Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALR 290 >gi|268590578|ref|ZP_06124799.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131] gi|291313966|gb|EFE54419.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131] Length = 269 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 152/282 (53%), Gaps = 16/282 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I+ I ++ L G +++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDQFIIDSIVDAMNPLPGQSIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + K+ V+E D+ L + Q ++L IIQ DA+ VDF + P+R+ Sbjct: 53 EPVGSR-IDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A S +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S ++ IPH NP P ++ L +IT +AF +RRKT+R Sbjct: 168 CNVVPVLEVPPTAFTPAPKVDSAIVRLIPHRENPYPVKDIKFLSRITTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL L L + GI+ + RAEN+S+E +C++ N L++ + Sbjct: 228 SLGDLFSVEELTELGIDLSTRAENISVEQYCKMANYLSNRSE 269 >gi|295108631|emb|CBL22584.1| dimethyladenosine transferase [Ruminococcus obeum A2-162] Length = 290 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 151/296 (51%), Gaps = 22/296 (7%) Query: 1 MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + N +++ +L Y + +K GQNFL+D ++L +I ++S V+EIG G Sbjct: 1 MTRPYLGNPKYTI-EVLQKYGFVFQKRFGQNFLIDTHVLDRIIQASEITKDDFVLEIGPG 59 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115 G +TQ L AR+V +E D PILKD + N + +I D LK D K + Sbjct: 60 IGTMTQYLADS-AREVTAVEIDDALIPILKDTLKEWDN-VNVIHGDILKTDIRKIADEKN 117 Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 PI+++ANLPY I T ++ + +S+T++ QKEV +R+ S YG L Sbjct: 118 QGRPIKVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGAL 174 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232 S+ + K ++ ++ P+ F P PKV S VI H NP + + +I + +F + Sbjct: 175 SLAVQYYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNPPVTAKDEKLMFRIIRASFNQ 234 Query: 233 RRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RRKTL LK E + + G+ N+R E L++E F ++++I D + Sbjct: 235 RRKTLANGLKNSQELNYTKEQVEAAITECGLPLNIRGEALTLEQFAKLSDIFFDMK 290 >gi|262377470|ref|ZP_06070692.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145] gi|262307526|gb|EEY88667.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145] Length = 270 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 94/259 (36%), Positives = 138/259 (53%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHQARKRFGQNFLHDQRVIAKIVRSVNPRPGQNILEIGPGLAALTSPLIGEC-DALTVLE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L HP RL II+ DAL+ D+ + F P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLSGRV-PHPERLTIIEADALRYDYSQLFQEDRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P Sbjct: 131 LE---FGDKVQDMHFMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNP 187 Query: 198 SPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V P+ PI ++L ++ F +RRKTLR SLK + E +AG+ Sbjct: 188 PPKVTSAVFRLEPYKVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEEGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++E F +++ Sbjct: 248 DPMARPETLTLEQFVALSD 266 >gi|329925506|ref|ZP_08280380.1| dimethyladenosine transferase [Paenibacillus sp. HGF5] gi|328939789|gb|EGG36129.1| dimethyladenosine transferase [Paenibacillus sp. HGF5] Length = 294 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + K I+S + KK +GQNFL+D NIL KI E++G + +EIG G G LT+ Sbjct: 7 ISTPRRTKEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTE 66 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPI 119 L A V +E DQ+ PILK++ + N + + D LKVD + F S + Sbjct: 67 KLAQT-AGTVTAVEIDQRLIPILKEVLEPYGN-VRVHHGDVLKVDLHELFRQDFGDVSKV 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPY + T +L + E++ ++ QKEV ER+ A S YG LS+ Sbjct: 125 SVVANLPYYVTTPILMKLLEEKLP---LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQ 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + ++ ++ + VF P P V S VI P ++ Q +F +RRKT+ Sbjct: 182 YYSEPKLVCIVPHTVFIPQPNVESAVIRLAVREQPPVRVEDERFFFEVVQASFAQRRKTI 241 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK E LL +AGIE + R E LSIE++ R++N+L Sbjct: 242 ANNLKSRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288 >gi|226954480|ref|ZP_03824944.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Acinetobacter sp. ATCC 27244] gi|294651496|ref|ZP_06728809.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC 19194] gi|226834829|gb|EEH67212.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Acinetobacter sp. ATCC 27244] gi|292822646|gb|EFF81536.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC 19194] Length = 270 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 94/259 (36%), Positives = 137/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHQARKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L HP RL II+ DALK DF + F P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPGRV-PHPERLTIIEADALKYDFTQLFQDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITAVPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNP 187 Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V P+ ++L ++ F +RRKTLR SLK + ++ +AG+ Sbjct: 188 PPKVTSAVFRLEPYETKPIVAKDEKALARLVSHVFTQRRKTLRNSLKGMLADDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E LS+ DF +++ Sbjct: 248 DPMARPETLSLADFVALSD 266 >gi|330963845|gb|EGH64105.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 268 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLEQVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|262281588|ref|ZP_06059366.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202] gi|262256964|gb|EEY75704.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202] Length = 270 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 91/259 (35%), Positives = 136/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G V+EIG G LT L+ + V+E Sbjct: 13 GHKARKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPERV-PHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA+ N+ YGRLSV+ + + T +F++ F P Sbjct: 131 LE---FGSKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V +P+ ++L ++ F +RRKTLR SLK + E+ +AG+ Sbjct: 188 PPKVTSAVFRLVPYEQKPIIAKDEKALARLVGHVFTQRRKTLRNSLKGMIAEDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++ F + + Sbjct: 248 DPMARPETLTLTQFVALAD 266 >gi|302130722|ref|ZP_07256712.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 268 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|318607172|emb|CBY28670.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 272 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + VIE D+ L Q ++L I Q+DA+K++F + + P+R+ Sbjct: 53 EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAELAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTSA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ IPH+N P P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 228 SLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|293611446|ref|ZP_06693741.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826230|gb|EFF84600.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 270 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 136/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHKARKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPERV-PHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA+ N+ YGRLSV+ + + T +F++ F P Sbjct: 131 LE---FGSKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V +P+ ++L ++ F +RRKTLR SLK + E+ +AG+ Sbjct: 188 PPKVTSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAEDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++ F + + Sbjct: 248 DPMARPETLTLAQFVALAD 266 >gi|153811992|ref|ZP_01964660.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174] gi|149831891|gb|EDM86977.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174] Length = 290 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 148/296 (50%), Gaps = 22/296 (7%) Query: 1 MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + N +++ +L Y + +K GQNFL+D +L +I E+S V+EIG G Sbjct: 1 MTRPYLGNPKYTI-EVLQKYGFVFQKRFGQNFLIDTRVLDRIIEASEITKDDFVLEIGPG 59 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115 G +TQ L AR+V +E D PIL+D + N + +I D LK D K + Sbjct: 60 IGTMTQYLAD-AAREVTAVEIDDALIPILQDTLKEWDN-VSVIHGDILKTDIRKIADEKN 117 Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 PI+++ANLPY I T ++ + +S+T++ QKEV +R+ S YG L Sbjct: 118 QGRPIKVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGAL 174 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232 S+ + K ++ ++ P+ F P PKV S VI H NP + + +I + +F + Sbjct: 175 SLAVQYYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNPPVQAKDEKLMFRIIRASFNQ 234 Query: 233 RRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RRKTL LK E + + G+ N+R E L++E F + +I D + Sbjct: 235 RRKTLANGLKNSQELQFTKEQVEQAITECGLPLNIRGEALTLEQFAALADIFVDMK 290 >gi|295689681|ref|YP_003593374.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756] gi|295431584|gb|ADG10756.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756] Length = 272 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 113/276 (40%), Positives = 169/276 (61%), Gaps = 8/276 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + L+ L + ++ +K GQ+FLLDLN+ +KIA + +G TV+E+G GPG Sbjct: 1 MSLAD-LPPLREALERHDLMARKSFGQHFLLDLNVTRKIARLAQIGEGDTVVEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR V+ IEKD +F P+L +++ RLE+++ DALKVD + P Sbjct: 60 LTRALLETGAR-VVAIEKDSRFLPLLSEVAEVADGRLELVEGDALKVDAAQAA--GGPAH 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +++NLPYN+GT+LL NW++ P S+TL+FQKEV +RI AQ + YGRL+V+ Sbjct: 117 VVSNLPYNVGTQLLINWLTGPFRP---LSMTLMFQKEVADRIVAQPDDDAYGRLAVIAQT 173 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQ 239 +A + D+ F P PKV S V+ +P +P P + +L+++T AFG+RRK LR Sbjct: 174 LCEAKTVMDLPAKAFTPPPKVASAVVRLVPRQDPPPAEIVAALERVTAAAFGQRRKMLRS 233 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 SLK LGG L +AGI + RAE + + F + Sbjct: 234 SLKALGGGELCEKAGISPDARAEVIDLAGFLALAKA 269 >gi|229592954|ref|YP_002875073.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25] gi|229364820|emb|CAY52848.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25] Length = 270 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 141/265 (53%), Gaps = 7/265 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D ++ +I S + ++EIG G G LTQ LL G ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF + +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNQQFAGMPN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSQAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262 >gi|148378088|ref|YP_001252629.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 3502] gi|148287572|emb|CAL81637.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 3502] Length = 278 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 102/283 (36%), Positives = 153/283 (54%), Gaps = 14/283 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN + K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT Sbjct: 1 MNNM--NTKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A++V IE D PIL++ ++ N +I DALK+DF + I+++ Sbjct: 59 KELLER-AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + Sbjct: 117 ANLPYYVTTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQS 240 ++ +SP+ F P PKV S VI P + + + +F RRKTL S Sbjct: 174 NTKIIRKVSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNS 233 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L EN +AGI+ R E LSIE+F ++++ + D Sbjct: 234 LKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 276 >gi|28867779|ref|NP_790398.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str. DC3000] gi|33516927|sp|Q88A46|RSMA_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28851014|gb|AAO54093.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str. DC3000] gi|331017631|gb|EGH97687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 268 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|49082884|gb|AAT50842.1| PA0592 [synthetic construct] Length = 269 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 140/266 (52%), Gaps = 7/266 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + + +G ++EIG G G LT+ LL GAR + Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE DQ P+LK + +R + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + P E + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ P P + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 A ++ L E L + F R+ N L + Sbjct: 238 AEVDPTLHPEQLDLAAFVRLANQLAE 263 >gi|315644358|ref|ZP_07897498.1| dimethyladenosine transferase [Paenibacillus vortex V453] gi|315280235|gb|EFU43527.1| dimethyladenosine transferase [Paenibacillus vortex V453] Length = 294 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 147/289 (50%), Gaps = 19/289 (6%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + K I+S + KK +GQNFL+D NIL KI E++G + +EIG G G LT+ Sbjct: 7 ISTPRRTKEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTE 66 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPI 119 L A V IE DQ+ PIL+++ + N +++ D LKVD + F S + Sbjct: 67 KLAQT-AGTVTAIEIDQRLIPILREVLEPYEN-VKVHHGDVLKVDLHELFQQDFGGVSKV 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPY + T +L + E++ ++ QKEV ER+ A S YG LS+ Sbjct: 125 SVVANLPYYVTTPILMKLLEEKLP---LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQ 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL 237 + ++ ++ + VF P P V S VI P + ++ Q +F +RRKT+ Sbjct: 182 YYSEPKLVCIVPHTVFIPQPNVASAVIRLAVREEPPVSVEDEGFFFEVVQASFAQRRKTI 241 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +LK E LL +AGI + R E LSIE++ +++N+L + Sbjct: 242 ANNLKSRFFAGEGRERLEQLLQEAGIVPSRRGETLSIEEYAKLSNVLYN 290 >gi|219870955|ref|YP_002475330.1| dimethyladenosine transferase [Haemophilus parasuis SH0165] gi|219691159|gb|ACL32382.1| dimethyladenosine transferase [Haemophilus parasuis SH0165] Length = 286 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 19/285 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N+K H +K GQNFL D N++ I + ++EIG G G Sbjct: 1 MSSNSK--------KHLGHTARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116 LT+ + L + V+E D+ L+ H +L +I+ DAL+ DF +F+ Sbjct: 53 LTEPVADL-VDHLTVVELDRDLAERLRHHPFLHQ-KLTVIEQDALRFDFRAYFDSLALNG 110 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + + + QKEV +R+ A NS YGRL++ Sbjct: 111 KAVKVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 167 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P P + L ++T +AF +RR Sbjct: 168 MAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFNQRR 227 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTLR +L L L G++ N RAENLS+ D+ R+ N L DN Sbjct: 228 KTLRNALATLFSVEQLEALGVDLNARAENLSLADYARLANWLCDN 272 >gi|259907385|ref|YP_002647741.1| dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96] gi|224963007|emb|CAX54490.1| Dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96] gi|283477218|emb|CAY73125.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia pyrifoliae DSM 12163] Length = 275 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 138/267 (51%), Gaps = 8/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G V+EIG G G LT+ + + V Sbjct: 6 HQGHFARKRFGQNFLNDRYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DSMTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134 +E D+ L+ +L I Q DA+ DF P+R+ NLPYNI T L+ Sbjct: 65 VELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFATLAQEKGQPLRVFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + + QKEV R+ A S YGRL+V+ + + + ++ P Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180 Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ +P+ P + +L +IT EAFGKRRKTLR SL L ++L + Sbjct: 181 FTPAPKVDSAVVRLMPYAQPPHPVDDIRALSRITTEAFGKRRKTLRNSLGHLFTTDVLAE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 I+ LRAEN+++ +C++ N LT + Sbjct: 241 MNIDPTLRAENITVAQYCQLANWLTAH 267 >gi|254420085|ref|ZP_05033809.1| dimethyladenosine transferase [Brevundimonas sp. BAL3] gi|196186262|gb|EDX81238.1| dimethyladenosine transferase [Brevundimonas sp. BAL3] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 116/278 (41%), Positives = 165/278 (59%), Gaps = 10/278 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT SL+ L + ++ KK GQ+FLLDLN+ +KI +G +G VIE+G GPG Sbjct: 1 MT---DLPSLRETLDAHGLLAKKSFGQHFLLDLNVTRKIVRLAGPFEGRAVIEVGPGPGG 57 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL A V+++EKD +F P+L ++ RL I++ DALKV +S P Sbjct: 58 LTRALLESDAGPVVLVEKDPRFIPLLSEL-DDGSGRLTIVEADALKVKEADL--VSGPAH 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +++NLPYN+GT LL W++ P SLTL+FQKEV ER+ A YGRL+V++ Sbjct: 115 MVSNLPYNVGTALLIKWLTGPWLPH---SLTLMFQKEVAERVAAGPGDDAYGRLAVISQA 171 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQ 239 A ++ + F P PKV S V+H +P P P L+ L+++T AFG+RRK LR Sbjct: 172 VCTARIVMHLPAAAFTPPPKVASAVVHLVPLDERPSPERLKKLERVTAAAFGQRRKMLRS 231 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK+LGG L AGIE ++RAE + + F R+ + L Sbjct: 232 SLKQLGGAELCEAAGIEPDVRAETVDVAGFLRLADALA 269 >gi|315639886|ref|ZP_07895017.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952] gi|315484311|gb|EFU74776.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952] Length = 295 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 21/290 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + IL+ + KK +GQNFL D NIL+ I + VIE+G G G LT+ L Sbjct: 10 PSRTREILAKHGFTFKKSLGQNFLTDPNILRNIVAAGDIDQDTNVIEVGPGIGALTEYLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL-----KVDFEKFFNISSPIRI 121 A +V+ E D + P+L D S + N + +I D L V E+F N P+++ Sbjct: 70 -RAAHQVVAFEIDDRLLPVLADTLSPYDN-VSVIHQDILQARIDHVLQEQFTNDGRPVKV 127 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ +++ + + ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 VANLPYYITTPIMMHFLDSKV---EIAEMIVMMQKEVADRISAKPGTKAYGSLSIAVQYY 184 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 +A++ F + VF P P V S ++ P ++ +T+ AF +RRKT Sbjct: 185 MEASVAFIVPKTVFVPQPNVDSAILKLTRRPQPAVDVINEKAFFGLTKAAFLQRRKTFWN 244 Query: 240 SLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L+ G++ L +A I+ R E LS+E+F R++N++ N+ Sbjct: 245 NLQSYYGKDEATKAWLQQSLKEAEIDPIRRGETLSLEEFARLSNVMEANK 294 >gi|330505265|ref|YP_004382134.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01] gi|328919551|gb|AEB60382.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 146/266 (54%), Gaps = 7/266 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + + ++EIG G G +T+ LL GA ++ Sbjct: 1 MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKEDERLLEIGPGQGAITEGLLGSGA-QL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D PIL++ +P R + Q DALK DF + +R++ NLPYNI T L Sbjct: 60 DVIELDLDLIPILQNKFGANP-RFRLNQGDALKFDFARLEAAPRSLRVVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + P + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 119 IFHLLDNA---PLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK+L + Sbjct: 176 AFNPPPKVDSAIVRLVPHETLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261 >gi|85711795|ref|ZP_01042851.1| dimethyladenosine transferase [Idiomarina baltica OS145] gi|85694410|gb|EAQ32352.1| dimethyladenosine transferase [Idiomarina baltica OS145] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 149/267 (55%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D +I++ I ++ G ++EIG G LT+ + +++ V Sbjct: 5 HLGHRARKRFGQNFLNDEHIIESIVDAIHPQPGENLVEIGPGLAALTEPVAERC-QQLRV 63 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L + L++I+ DA+K+DF+ F + +R+ NLPYNI T L+F Sbjct: 64 VELDRDLADRL-ETHPFLSQHLDVIRGDAMKIDFKAFASPEQKLRVFGNLPYNISTPLIF 122 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + E + + QKEV +R+TA+ S YGR++V R + + D+ P F Sbjct: 123 HLLK---FSDYVEDMHFMLQKEVVDRLTAEPGSKTYGRITVSVQQRCEVQKVLDVPPEAF 179 Query: 196 FPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ P+ +P P ++ L+ + AF +RRKT++ +LK+L + L Sbjct: 180 TPPPKVESAVVRLRPYVKSPTPVKDVQQLQSLCLTAFNQRRKTIKNNLKKLIDDTQLEAL 239 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI + R E L++ D+CRI++ LTDNQ Sbjct: 240 GINPSARPETLTVADYCRISDWLTDNQ 266 >gi|58038777|ref|YP_190741.1| dimethyladenosine transferase [Gluconobacter oxydans 621H] gi|62900455|sp|Q5FU61|RSMA_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58001191|gb|AAW60085.1| Putative dimethyladenosine transferase (16S rRNA dimethylase) [Gluconobacter oxydans 621H] Length = 303 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 117/271 (43%), Positives = 165/271 (60%), Gaps = 6/271 (2%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 SL+ + + + KK +GQ+FLLD I +IA G L G +V+EIG GPG LT+ L Sbjct: 33 SLPSLRDTIQAHGLDAKKSLGQHFLLDPGICARIAALGGDLTGRSVVEIGPGPGGLTRAL 92 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A +V V+E D++ +P+L ++++ +P+RL +++ DALK+D +P +IIANL Sbjct: 93 LDTPASRVDVVEIDERAWPLLDELATYYPDRLHVVRQDALKLDAATLA--PAPRQIIANL 150 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ T LL W+ + WE L+L+FQ EV ERI A S YGRL+VL+ W + Sbjct: 151 PYNVATPLLVGWLRQASQ---WERLSLMFQLEVAERICAAPGSSAYGRLAVLSQWCASCS 207 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + I P F P PKV S V IPH P P +++++T AFG+RRK LR SLK + Sbjct: 208 VALRIPPAAFSPPPKVHSAVAVIIPHAEQPSPQLFRAMEQVTAAAFGQRRKMLRSSLKSI 267 Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNI 275 GGE LL QA IE RAE LS+ +F R+ + Sbjct: 268 GGERLLEQAEIEPTRRAETLSVAEFARLAEL 298 >gi|146281120|ref|YP_001171273.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501] gi|145569325|gb|ABP78431.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501] Length = 264 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 94/268 (35%), Positives = 148/268 (55%), Gaps = 7/268 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + G ++EIG G G LT+ LL GA ++ Sbjct: 1 MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLHSGA-QL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 V+E D PIL+ + N + Q DALK DF + + +RI+ NLPYNI T L Sbjct: 60 DVVELDLDLIPILQAKFAGREN-FNLNQGDALKFDFSRLSQEPASLRIVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + + + QKEV ER+ AQ +GRLS++ + + +F++ P Sbjct: 119 IFHLLEHAQ---LIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK L + Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDAEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 AG++ +LR E L + F R+++ LT+ Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTER 263 >gi|187777327|ref|ZP_02993800.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC 15579] gi|187774255|gb|EDU38057.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC 15579] Length = 278 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 103/283 (36%), Positives = 153/283 (54%), Gaps = 14/283 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN + K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT Sbjct: 1 MNNM--NTKEIVNKYEFKFNKNLGQNFLVDESVLEDIIEGAEISKEDTVIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A++V IE D PILK+ ++ N +I DALK+DF I+++ Sbjct: 59 KELLE-KAKEVYSIELDGDLIPILKEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + Sbjct: 117 ANLPYYVTTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 ++ +SP+ F P PKV S VI P + + + +F RRKTL S Sbjct: 174 DTKIIRKVSPNCFIPRPKVDSIVIKLDKLSEPRVKVKSEKLFFNVVRSSFNMRRKTLWNS 233 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L EN +AGI++ R E LSIE+F ++++ + D Sbjct: 234 LKSLNIDKENMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 276 >gi|227114236|ref|ZP_03827892.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 272 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 98/280 (35%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + R VIE D+ L + ++L IIQ DA+ +DF P+R+ Sbjct: 53 APVGERMDR-FTVIELDRDLAARL-ETHPTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A NS +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKTLR Sbjct: 168 CQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L + GI+ + RAEN+++E +CR+ N L+++ Sbjct: 228 SLGNLFTPEILTELGIDVSSRAENVTVEQYCRLANWLSEH 267 >gi|167854678|ref|ZP_02477458.1| dimethyladenosine transferase [Haemophilus parasuis 29755] gi|167854215|gb|EDS25449.1| dimethyladenosine transferase [Haemophilus parasuis 29755] Length = 286 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 19/285 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N+K H +K GQNFL D N++ I + ++EIG G G Sbjct: 1 MSSNSK--------KHLGHTARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116 LT+ + L + V+E D+ L+ H +L +I+ DAL+ DF +F+ Sbjct: 53 LTEPVADL-VDHLTVVELDRDLAERLRHHPFLHQ-KLTVIEQDALRFDFRAYFDSLALNG 110 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ NLPYNI T L+F+ + + + QKEV +R+ A NS YGRL++ Sbjct: 111 KAVKVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 167 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234 + + + + ++ P F P+PKV S V+ +P+ P P + L ++T +AF +RR Sbjct: 168 MAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFNQRR 227 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTLR +L L L G++ N RAENLS+ D+ R+ N L DN Sbjct: 228 KTLRNALATLFNVEQLEALGVDLNARAENLSLADYARLANWLCDN 272 >gi|156124974|gb|ABU50801.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Acinetobacter venetianus] Length = 270 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 94/259 (36%), Positives = 137/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHQARKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L HP RL I++ DALK DF + F P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPGRV-PHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITATPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNP 187 Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V P+ ++L ++ F +RRKTLR SLK + E+ +AG+ Sbjct: 188 PPKVTSAVFRLEPYETKPIVAKDEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E LS+ DF +++ Sbjct: 248 DPMARPETLSLADFVALSD 266 >gi|261250207|ref|ZP_05942783.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891] gi|260939323|gb|EEX95309.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891] Length = 268 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSSINPKPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L+ L ++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLVPYEEIPHPVSDLKYLDRVCREGFNQRRKTVRNCYKGLLSAEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 GI ++R ENL++ F + N L N Sbjct: 241 GINPSMRPENLTLVQFVEMANWLAAN 266 >gi|317493320|ref|ZP_07951742.1| dimethyladenosine transferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918713|gb|EFV40050.1| dimethyladenosine transferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 270 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 147/282 (52%), Gaps = 16/282 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLTDQYVIDSIVSAIHPMPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L ++L I Q DA+ VDF + + P+R+ Sbjct: 53 EPVADR-MDKMTVIELDRDLAARLA-THPFISSKLNIRQQDAMTVDFGELSQELGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TYTGAISDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ IPH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPTAFRPAPKVDSAVVRLIPHATIPHPVKDIRVLSRITTEAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL L L + GI+ LRAEN+S+E++C++ N L + Sbjct: 228 SLGHLFTPEQLTELGIDPALRAENISVENYCKLANWLCEKSP 269 >gi|293392900|ref|ZP_06637217.1| dimethyladenosine transferase [Serratia odorifera DSM 4582] gi|291424434|gb|EFE97646.1| dimethyladenosine transferase [Serratia odorifera DSM 4582] Length = 272 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPQPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + R + VIE D+ L Q ++L I Q DA+ V+F + P+R+ Sbjct: 53 EPVGARMDR-MTVIELDRDLAARLASH-PQLKDKLTIHQQDAMTVNFSEMAEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH+ + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFAPPPKVDSAVVRLVPHVLMPHTVSDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L L + G++ LRAEN+S+ +C++ N L+ Sbjct: 228 SLGDLFTPEQLSELGVDPTLRAENISVAQYCQLANWLS 265 >gi|292489394|ref|YP_003532281.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia amylovora CFBP1430] gi|292898387|ref|YP_003537756.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946] gi|291198235|emb|CBJ45341.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946] gi|291554828|emb|CBA22688.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia amylovora CFBP1430] gi|312173559|emb|CBX81813.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 275 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 93/267 (34%), Positives = 139/267 (52%), Gaps = 8/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G V+EIG G G LT+ + + V Sbjct: 6 HQGHFARKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DSMTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134 +E D+ L+ P +L I Q DA+ DF P+R+ NLPYNI T L+ Sbjct: 65 VELDRDLAARLQSHPFLGP-KLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + + QKEV R+ A S YGRL+V+ + + + ++ P Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180 Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ +P+ P + +L +IT EAFGKRRKTLR SL L ++L + Sbjct: 181 FTPAPKVDSAVVRLMPYAQPLHPVDDIRALSRITTEAFGKRRKTLRNSLGHLFTTDVLAE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 I+ LRAEN+++ +C++ N LT + Sbjct: 241 MNIDPTLRAENITVAQYCQLANWLTAH 267 >gi|123440993|ref|YP_001004982.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166221715|sp|A1JJF4|RSMA_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122087954|emb|CAL10742.1| dimethyladenosine transferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 272 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + VIE D+ L Q ++L I Q+DA+K++F + + P+R+ Sbjct: 53 EPVAAR-MDHMTVIELDRDLADRLASH-PQLKDKLTIHQEDAMKINFSELAELAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTSA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ IPH+N P P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 228 SLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265 >gi|307294656|ref|ZP_07574498.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1] gi|306879130|gb|EFN10348.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1] Length = 280 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 110/275 (40%), Positives = 161/275 (58%), Gaps = 5/275 (1%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 K L+ +++ + + K +GQNFLLD +L +IA G + E+G GPG LT+ Sbjct: 6 GTKLPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPIKDRPAFEVGPGPGGLTR 65 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 +L GA K++ +E+D + P L ++ + P +L +I DA++VD IIA Sbjct: 66 AILRAGA-KLVAVERDHRCLPALAELDTAFPGQLRVISGDAMEVDAR--AEAGEGAHIIA 122 Query: 124 NLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYN+GT LL W+S + P P+W SLTL+FQ EV ERI A+ HYGRL++L+ WR+ Sbjct: 123 NLPYNVGTALLIGWLSTNWTPLPWWSSLTLMFQMEVAERIVAKPGGDHYGRLAILSQWRS 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 A + + F P PKV S V+H P P L+ L+++T AFG+RRK LRQSLK Sbjct: 183 DARIAMKVHRSAFTPPPKVMSAVVHITPKRAPEGVQLKHLERLTAAAFGQRRKMLRQSLK 242 Query: 243 RL-GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G + L GI+ RAE +S+E+F + ++ Sbjct: 243 GLPGALDALEAVGIDPQRRAETVSVEEFVAVARVM 277 >gi|188532871|ref|YP_001906668.1| dimethyladenosine transferase [Erwinia tasmaniensis Et1/99] gi|226732581|sp|B2VGP6|RSMA_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|188027913|emb|CAO95770.1| Dimethyladenosine transferase [Erwinia tasmaniensis Et1/99] Length = 273 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 138/267 (51%), Gaps = 8/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G V+EIG G G LT+ + + V Sbjct: 6 HQGHFARKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DNMTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134 +E D+ L+ +L I Q DA+ DF P+R+ NLPYNI T L+ Sbjct: 65 VELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + + QKEV R+ A S YGRL+V+ + + + ++ P Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180 Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ +P+ P + +L +IT EAFGKRRKTLR SL L ++L + Sbjct: 181 FTPAPKVDSAVVRLMPYAQPPHPVNDIRALSRITTEAFGKRRKTLRNSLGHLFTVDVLAE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 I+ LRAEN+++ +C++ N LT + Sbjct: 241 MNIDPTLRAENITVAQYCQLANWLTAH 267 >gi|330955094|gb|EGH55354.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae Cit 7] Length = 268 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R+ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFANKPN-FNLHQGDALKFDFNTLGAEPRSLRVGGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHHVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|146309027|ref|YP_001189492.1| dimethyladenosine transferase [Pseudomonas mendocina ymp] gi|145577228|gb|ABP86760.1| dimethyladenosine transferase [Pseudomonas mendocina ymp] Length = 269 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 144/266 (54%), Gaps = 7/266 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y+ +K GQNFL D ++ +I + + DG ++EIG G G +T+ LL GA ++ Sbjct: 1 MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKDGERLLEIGPGQGAITEGLLGSGA-QL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D PIL+ +P R + Q DALK DF + +R++ NLPYNI T L Sbjct: 60 DVIELDLDLIPILQGKFGDNP-RFRLNQGDALKFDFARLEAAPGSLRVVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F+ + P + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 119 IFHLLDNA---PLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175 Query: 194 VFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S ++ +PH L+++ +EAF +RRKTLR +LK+L + Sbjct: 176 AFNPPPKVDSAIVRLVPHEVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261 >gi|213967675|ref|ZP_03395822.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1] gi|301382735|ref|ZP_07231153.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato Max13] gi|302063470|ref|ZP_07255011.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato K40] gi|213927451|gb|EEB60999.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1] Length = 268 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 89/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ +K GQNFL D +L KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQFQHRARKRFGQNFLHDAGVLDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|254509385|ref|ZP_05121470.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16] gi|219547693|gb|EED24733.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16] Length = 268 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEYHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEELPYPATNLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 I +R ENL+++ F + N L N+ Sbjct: 241 DINPGMRPENLTLKQFVDLANWLDANR 267 >gi|323495829|ref|ZP_08100897.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio sinaloensis DSM 21326] gi|323319045|gb|EGA71988.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Vibrio sinaloensis DSM 21326] Length = 268 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEYHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L L ++ +E F +RRKT+R K L L Sbjct: 181 VPPPKVDSAVVRLVPYEELPYPATSLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 I +R ENL+++ F + N L N+ Sbjct: 241 DINPGMRPENLTLKQFVDLANWLDANR 267 >gi|157690824|ref|YP_001485286.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032] gi|166987691|sp|A8F909|RSMA_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157679582|gb|ABV60726.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032] Length = 292 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL +I + + D VIEIG G G LT+ L Sbjct: 11 TKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV E DQ+ PIL D S + N + II D LK D E+ F + ++ANL Sbjct: 70 AKKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + + ++ QKEV +R+ A +S Y LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVADRMAAIPSSKEYNSLSIAVQYYTEAK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI P E ++ + +FG+RRKTL +L Sbjct: 186 TVMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + E L A I+ R E+LSIE+F R++N+L Sbjct: 246 NLPDGKQHKAIIEEALQTADIDGKRRGESLSIEEFARLSNVLQ 288 >gi|197301323|ref|ZP_03166408.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC 29176] gi|197299641|gb|EDY34156.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC 29176] Length = 297 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 19/292 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y + +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 11 TLGNPQNTI-EVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDVVLEIGPGIGTM 69 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A+KVI +E D+ PIL+D S++ N + +I D LKVD K N P Sbjct: 70 TQYLAC-AAKKVIAVEIDKALIPILEDTLSEYEN-VRVINHDVLKVDIAKLAEEENGGKP 127 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 128 IKVVANLPYYITTPIIMGLFENHVP---IKSITVMVQKEVADRMQVGPGTKDYGALSLAV 184 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI + NP + + ++ + +F +RRKT Sbjct: 185 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYENPPVTVKDEKLMFRLIRASFNQRRKT 244 Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L LK E + G ++R E L++E+F ++ ++L++ + Sbjct: 245 LANGLKNSPELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADLLSECR 296 >gi|261403903|ref|YP_003240144.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10] gi|261280366|gb|ACX62337.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10] Length = 294 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 95/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + K I+S + KK +GQNFL+D NIL KI E++G + +EIG G G LT+ Sbjct: 7 ISTPRRTKEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTE 66 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPI 119 L A V +E DQ+ PIL+++ + N + + D LKVD + F S + Sbjct: 67 KLAQT-AGTVTAVEIDQRLIPILREVLEPYGN-VRVHHGDVLKVDLHELFRQDFADVSKV 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPY + T +L + E++ ++ QKEV ER+ A S YG LS+ Sbjct: 125 SVVANLPYYVTTPILMKLLEEKLP---LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQ 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + ++ ++ + VF P P V S VI P ++ Q +F +RRKT+ Sbjct: 182 YYSEPKLVCIVPHTVFIPQPNVESAVIRLAVREQPPVRVEDERFFFEVVQASFAQRRKTI 241 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LK E LL +AGIE + R E LSIE++ R++N+L Sbjct: 242 ANNLKSRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288 >gi|330812131|ref|YP_004356593.1| dimethyladenosine transferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380239|gb|AEA71589.1| putative dimethyladenosine transferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 272 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I S + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + N + Q DALK DF + +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLVPILNQQFAGRSN-FSLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLSNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRMLERVVREAFNQRRKTLRNTLKLLLSSAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 AG++ +LR E L + F R+ + L++ Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLSEQ 264 >gi|312113661|ref|YP_004011257.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100] gi|311218790|gb|ADP70158.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100] Length = 287 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 112/278 (40%), Positives = 168/278 (60%), Gaps = 3/278 (1%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 L+ I+ + +K +GQNF+LDLN+ ++IA ++G L+G TV+EIG GPG LT+ L Sbjct: 8 SLPPLREIIKDASLSARKSLGQNFILDLNVTRRIARAAGPLNGATVLEIGPGPGGLTRAL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L GA I IE+D++F P L I+ +R + DA+ +D+ F + R++ANL Sbjct: 68 LIEGASGAIAIERDERFRPALDQIAEASGDRFRVTFADAMGIDYPAFAAETGANRLVANL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNI T L+ W++ WPP+++ + ++ QKEV ER+ A S HYGRL+V+ +R +A Sbjct: 128 PYNIATPLIVGWLTEARWPPWFDRIVVMVQKEVAERLVADVGSDHYGRLAVIAQFRARAR 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 ++F + P VF P PKV S ++ +P P L+++T AFG+RRK LR SL L Sbjct: 188 ILFTLPPSVFTPPPKVASALVEIVPRPQAPDAVPTSWLERVTAAAFGQRRKMLRSSLASL 247 Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + LL AGI+ RAE L++EDF R+ L + Sbjct: 248 GADTARLLADAGIDPAERAERLTVEDFIRLAQALQRQR 285 >gi|260773617|ref|ZP_05882533.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14] gi|260612756|gb|EEX37959.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14] Length = 271 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 7/263 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + L G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELSSKLTIHEGDAMRFDFQQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHK---EIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPSAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ P P L+ L ++ +E F +RRKT+R K L + Q Sbjct: 181 VPPPKVDSAVVRLLPYEELPHPATSLKWLDRVVREGFNQRRKTVRNCYKGLLDDETFAQL 240 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 I++ +R ENL+++ F + N L Sbjct: 241 AIDSTMRPENLTLQQFVSMANWL 263 >gi|197286180|ref|YP_002152052.1| dimethyladenosine transferase [Proteus mirabilis HI4320] gi|227357300|ref|ZP_03841657.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC 29906] gi|226732611|sp|B4F2I2|RSMA_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194683667|emb|CAR44618.1| dimethyladenosine transferase [Proteus mirabilis HI4320] gi|227162563|gb|EEI47552.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC 29906] Length = 272 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 102/284 (35%), Positives = 147/284 (51%), Gaps = 16/284 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I++ I ES G VIEIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDSYIIESIVESIYPQPGEAVIEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + K+ V+E D+ L ++ ++L IIQ DA+ +DF + P+R+ Sbjct: 53 EPVGER-MDKMTVVEIDRDLAARL-EVHPTLKDKLTIIQQDAMTIDFAQLAKERQQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + +T + QKEV R+ A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---FADAISDMTFMLQKEVVNRLVASHGSKTYGRLSVMAQYH 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ IP+ P P + L +IT +AF +RRKTLR Sbjct: 168 CQVIPIIEVPPSSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITSQAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 SL L + I+ RAEN+S+E +C++ N L+ Q A Sbjct: 228 SLGGLLTAEDMLALDIDPTARAENISVEQYCKVANWLSSQQQHA 271 >gi|120599973|ref|YP_964547.1| dimethyladenosine transferase [Shewanella sp. W3-18-1] gi|146292093|ref|YP_001182517.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32] gi|166221703|sp|A4Y435|RSMA_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221705|sp|A1RMU8|RSMA_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120560066|gb|ABM25993.1| dimethyladenosine transferase [Shewanella sp. W3-18-1] gi|145563783|gb|ABP74718.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32] gi|319425389|gb|ADV53463.1| dimethyladenosine transferase [Shewanella putrefaciens 200] Length = 268 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDGNVINRIVGAIAPDNNHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + + V+E D+ L ++L I Q DAL+ DF + +++ Sbjct: 53 EPVAM-AVDNLTVVELDRDLVERLHKH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ PH F P+PKV S V+ +P+ P PC + L+++ AF RRKTLR + Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + + Q GI+ + R E +S+E + + N++ D + Sbjct: 228 LKHMLSDAEFEQLGIDQSQRPEQISVEQYVAMANMICDRK 267 >gi|291549844|emb|CBL26106.1| dimethyladenosine transferase [Ruminococcus torques L2-14] Length = 304 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 19/292 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y + +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 19 TLGNPQNTI-EVLQKYNFVFQKKFGQNFLIDTHVLDKIIAAAEITKDDFVLEIGPGIGTM 77 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L ARKV+ +E D+ PIL+D S + N +I +D LKVD K N P Sbjct: 78 TQYLAC-AARKVVAVEIDKALIPILEDTLSDYDNA-RVINNDVLKVDIAKLAEEENGGKP 135 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 136 IKVVANLPYYITTPIIMGLFENHVP---IKSITVMVQKEVADRMQVGPGTKDYGALSLAV 192 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI + P + + +I + +F +RRKT Sbjct: 193 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYEEPPVKVKDEKLMFRIIRASFNQRRKT 252 Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L LK E + G ++R E L++E+F ++ + L D + Sbjct: 253 LANGLKNSAELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADFLYDCR 304 >gi|239628929|ref|ZP_04671960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519075|gb|EEQ58941.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 288 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 146/290 (50%), Gaps = 19/290 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N H++ I+ Y+ +K GQNFL+D ++L KI ++G V+EIG G G +T Sbjct: 4 LGNPKHTI-EIIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITKEDCVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A +V+ +E D PIL + + N + +I +D LK+D K +N PI Sbjct: 63 QYLAEH-AGRVVAVEIDTNLLPILDETLKGYDN-VTVINNDILKLDINKLVDEYNGGRPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ D +++T++ QKEV +R+ S YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFEGDVP---IDNVTVMVQKEVADRMQVGPGSKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI + P + + K+ + +F +RRKTL Sbjct: 178 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRYKEPPVKVEDPKLMFKLVRASFNQRRKTL 237 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + L + + ++R E L++E F R++N T+N Sbjct: 238 QNGLNNSPDIPYTKEQIVEAIESLQVSPSVRGEALTLEQFARLSNYFTEN 287 >gi|149377956|ref|ZP_01895682.1| dimethyladenosine transferase [Marinobacter algicola DG893] gi|149357730|gb|EDM46226.1| dimethyladenosine transferase [Marinobacter algicola DG893] Length = 276 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 145/269 (53%), Gaps = 8/269 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 S + +K GQNFL D ++++I + ++EIG G G LT+ +L + + + Sbjct: 3 SKHGHQARKRFGQNFLHDPGVIERIIRAIHPRPDDALVEIGPGLGALTEEMLAVNSN-LQ 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ P+L+ +PN I + DALK DF + P+RII NLPYNI T L+ Sbjct: 62 VVELDRDLIPVLRTKFFNYPN-FRIHEADALKFDFGELV-ADKPLRIIGNLPYNISTPLI 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV +R+ A +YGRL ++T + + +F++ P Sbjct: 120 FHLLG---HSGVVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGA 176 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S ++ +PH P P + L+ + + AF RRKTLR++L + L+ Sbjct: 177 FRPAPKVDSAIVRLVPHKTLPHPAKNYKLLQAVVRTAFSARRKTLRKALAGMVSVEQLNS 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281 GI LR ENL + ++ I ++L D++ Sbjct: 237 IGINDGLRPENLGLAEYVAIADLLADSRP 265 >gi|295098565|emb|CBK87655.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 273 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MTNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DELTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P L L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L ++L + GI+ +RAEN+S+E +C++ N ++DN Sbjct: 228 SLGNLFTVDVLAELGIDPAMRAENISVEQYCKLANYISDN 267 >gi|170761464|ref|YP_001785410.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch Maree] gi|259494246|sp|B1KRY8|RSMA_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169408453|gb|ACA56864.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch Maree] Length = 275 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 98/276 (35%), Positives = 147/276 (53%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y+ K +GQNFL+D ++L+ I + + TVIEIG G G LT+ LL Sbjct: 3 TKEIVNKYEFKFNKNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLER- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL++ ++ N +I DALK+DF I+++ANLPY + Sbjct: 62 AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLVANLPYYV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + ++SLT++ QKEV ERI A+ N YG L+VL + ++ Sbjct: 121 TTPIISRLLKEKC---DFKSLTIMIQKEVAERIDAEPNCKEYGSLTVLVQYYCNTEIIRK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 +SP+ F P PKV S VI P + + + +F RRKTL SLK L Sbjct: 178 VSPNCFIPRPKVDSIVIKLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|32034722|ref|ZP_00134853.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207883|ref|YP_001053108.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae L20] gi|303249761|ref|ZP_07335965.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252642|ref|ZP_07338805.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245229|ref|ZP_07527320.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247401|ref|ZP_07529448.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249621|ref|ZP_07531607.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251949|ref|ZP_07533850.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254176|ref|ZP_07536021.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256444|ref|ZP_07538226.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258640|ref|ZP_07540375.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260874|ref|ZP_07542560.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166221641|sp|A3MZB7|RSMA_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126096675|gb|ABN73503.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648610|gb|EFL78803.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651328|gb|EFL81480.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853873|gb|EFM86087.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856098|gb|EFM88254.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858319|gb|EFM90389.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860641|gb|EFM92653.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862876|gb|EFM94825.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865074|gb|EFM96975.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867297|gb|EFM99150.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869441|gb|EFN01232.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 289 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 91/272 (33%), Positives = 141/272 (51%), Gaps = 12/272 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D+N++ I + +G ++EIG G G LT+ + K+ Sbjct: 8 KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQ-VDKLT 66 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYNI 129 V+E D+ L+ ++L II+ DAL+ +F ++F +R+ NLPYNI Sbjct: 67 VVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + + Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLE 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ +PH + L ++T +AF +RRKTLR +L L Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSP 242 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ N RAENLSI D+ R+ N L DN Sbjct: 243 EQLEALNIDLNARAENLSIADYARLANWLYDN 274 >gi|183597821|ref|ZP_02959314.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827] gi|188022577|gb|EDU60617.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827] Length = 269 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 147/279 (52%), Gaps = 16/279 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D I+ I ++ G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLTDQFIIDSIVDAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + K+ V+E D+ L + Q ++L IIQ DA+ VDF + P+R+ Sbjct: 53 EPVGSR-MDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNSIADMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ IPH NP P ++ L +IT +AF +RRKTLR Sbjct: 168 CQVVPVLEVPPTAFAPPPKVDSAVVRLIPHRENPYPLRDIKMLSRITTQAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 SL L L + GI+ RAEN+S+E +C++ N L Sbjct: 228 SLGDLLNVEQLTELGIDPGTRAENISVEAYCKMANYLAS 266 >gi|157960690|ref|YP_001500724.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345] gi|189028818|sp|A8H0V2|RSMA_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157845690|gb|ABV86189.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345] Length = 267 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 145/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + G K+IV+E D+ LK+ ++LEI Q DALK DF + +++ Sbjct: 53 EPVA-SGIDKLIVVELDKDLVERLKEH-PVLKDKLEIHQGDALKFDFNQLVREDKQMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ E++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFEFAQH---IENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P PKV S V+ +P+ P PC ++ L+ +T AF RRKTLR + Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKVKPWPCKDVDLLRNLTTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK+L + GI+ LR E +S+E + + N + D + Sbjct: 228 LKQLLSDEDFAVLGIDATLRPEQISVEQYVAMANHVFDRK 267 >gi|296116660|ref|ZP_06835270.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC 23769] gi|295976872|gb|EFG83640.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC 23769] Length = 285 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 115/278 (41%), Positives = 170/278 (61%), Gaps = 6/278 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++ SL+ +++ + + +K +GQ+FLLD I +IA +G LD + V+E+G GPG LT Sbjct: 8 LSTPHESLRDVIARHGLDARKSLGQHFLLDPGITARIASMAGRLDDVNVVEVGPGPGGLT 67 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A V V+E D + I+ ++++ HP RL +++DDA++ D +P +I+ Sbjct: 68 RALLDTPATSVSVVEVDARAIVIMNELAASHPGRLHVVEDDAMRRDLATL--CPAPRQIV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+GT LL W+ T W LTL+FQ EV ERI A +S HYGRL+VL+ W Sbjct: 126 ANLPYNVGTPLLVGWLRQAT---EWARLTLMFQLEVAERICAPPDSDHYGRLAVLSQWVA 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + ++ I P F P PKV S V++ IPH P P +++++T AFG+RRK LR +L Sbjct: 183 RCGIVMTIPPGAFSPPPKVQSAVVNLIPHTKQPAPALFRAMEQVTAAAFGQRRKMLRGAL 242 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + +GGE LL AGI N RAE L I DF R+ + + Sbjct: 243 RGIGGEALLEAAGIAGNRRAETLDIADFDRLAHAHLER 280 >gi|310765114|gb|ADP10064.1| dimethyladenosine transferase [Erwinia sp. Ejp617] Length = 275 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 94/267 (35%), Positives = 136/267 (50%), Gaps = 8/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G V+EIG G G LT+ + + V Sbjct: 6 HQGHFARKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DSMTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134 +E D+ L+ +L I Q DA+ DF P+R+ NLPYNI T L+ Sbjct: 65 VELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + + QKEV R+ A S YGRL+V+ + + + ++ P Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ +P+ P P L +IT EAFGKRRKTLR SL L + L + Sbjct: 181 FTPAPKVDSAVVRLMPYARLPHPVDDIRVLSRITTEAFGKRRKTLRNSLGHLFSVDALTE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 I+ LRAEN+S+ +C++ N LT + Sbjct: 241 MNIDPTLRAENISVAQYCQLANWLTAH 267 >gi|226327128|ref|ZP_03802646.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198] gi|225204346|gb|EEG86700.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198] Length = 272 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 147/282 (52%), Gaps = 16/282 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I++ I ES G ++EIG G G +T Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDSYIIESIVESIYPQPGQAIVEIGPGLGAIT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + K+ V+E D+ L ++ ++L IIQ DA+ +DF + P+R+ Sbjct: 53 EPVGAR-MDKMTVVEIDRDLAARL-EVHPTLKDKLTIIQQDAMTIDFAQLAKERQQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + +T + QKEV R+ A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---FADAISDMTFMLQKEVVNRLVAGHGSKTYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ IP+ P P + L +IT +AF +RRKTLR Sbjct: 168 CQIIPVLEVPPTSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITAQAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL L + I+ RAEN+S+E +C++ N L+ QD Sbjct: 228 SLGGLLTAEDMIALDIDPTARAENISVEQYCKVANWLSQKQD 269 >gi|261338954|ref|ZP_05966812.1| hypothetical protein ENTCAN_05155 [Enterobacter cancerogenus ATCC 35316] gi|288318781|gb|EFC57719.1| dimethyladenosine transferase [Enterobacter cancerogenus ATCC 35316] Length = 273 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MTNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +DF + + P+R+ Sbjct: 53 EPVGERL-DELTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMDFGELSTKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P L L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFTPPPKVDSAVVRLVPHKTMPYPVKELRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L ++L + GI+ +RAEN+S+E +C++ N ++DN Sbjct: 228 SLGNLFTVDVLAELGIDPTMRAENISVEQYCKLANYISDN 267 >gi|307546072|ref|YP_003898551.1| dimethyladenosine transferase [Halomonas elongata DSM 2581] gi|307218096|emb|CBV43366.1| dimethyladenosine transferase [Halomonas elongata DSM 2581] Length = 268 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 87/262 (33%), Positives = 130/262 (49%), Gaps = 6/262 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D I+ ++ + G G ++E+G G G LT+ LL + VIE Sbjct: 7 GHRARKRFGQNFLRDPGIISRLVRAIGPRPGQRLVEVGPGQGALTEPLLEAADGHLEVIE 66 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ P L+ P I + DALK DF + +R++ NLPYNI T L+ + Sbjct: 67 LDRDLIPGLRVQFFDKPG-FVIHEGDALKFDFRELRGDGPALRVVGNLPYNISTPLISHL 125 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++A + + QKEV ER+ A+ GRLSVL + + +F + P F P Sbjct: 126 LAAGDA---VSDMHFMLQKEVVERLAAEPGGTERGRLSVLAQYHCRVESLFTVPPEAFVP 182 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ PH P L+ + ++ +EAF +RRKTLR +LK L I Sbjct: 183 RPKVESAIVRLTPHETPPHRALDESLMFEVVREAFAQRRKTLRNNLKSRLSGEALSALDI 242 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + R + LS+ +F RI + L Sbjct: 243 DPGRRPQTLSVAEFVRIADHLA 264 >gi|299768749|ref|YP_003730775.1| dimethyladenosine transferase [Acinetobacter sp. DR1] gi|298698837|gb|ADI89402.1| dimethyladenosine transferase [Acinetobacter sp. DR1] Length = 270 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 91/259 (35%), Positives = 135/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G V+EIG G LT L+ + V+E Sbjct: 13 GHKARKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPERV-PHPERLTIIEADALKYDFNELVKDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P Sbjct: 131 LE---FGSKVKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187 Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V +P+ ++L ++ F +RRKTLR SLK + ++ +AG+ Sbjct: 188 PPKVTSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMIADDGFEKAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 R E L++ F + + Sbjct: 248 NPMARPETLTLAQFVALAD 266 >gi|330961062|gb|EGH61322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 268 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFAGKPN-FSLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMATGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH P P L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPHETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|237803359|ref|ZP_04590944.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025340|gb|EGI05396.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 268 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 140/267 (52%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ P L + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPTLNSQFAGKPN-FSLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH L+++ +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPHETLPHQAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|153940692|ref|YP_001389445.1| dimethyladenosine transferase [Clostridium botulinum F str. Langeland] gi|259494245|sp|A7G9I5|RSMA_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|152936588|gb|ABS42086.1| dimethyladenosine transferase [Clostridium botulinum F str. Langeland] gi|295317550|gb|ADF97927.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613] Length = 275 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL Sbjct: 3 TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLER- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 62 AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKESIKLVANLPYYV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + ++ Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 +SP+ F P PKV S VI P + + + +F RRKTL SLK L Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|153931501|ref|YP_001382487.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 19397] gi|153937047|ref|YP_001386039.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall] gi|259494241|sp|A7FQA9|RSMA_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|152927545|gb|ABS33045.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC 19397] gi|152932961|gb|ABS38460.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall] gi|322804353|emb|CBZ01903.1| dimethyladenosine transferase [Clostridium botulinum H04402 065] Length = 275 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL Sbjct: 3 TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 62 AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + ++ Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 +SP+ F P PKV S VI P + + + +F RRKTL SLK L Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|103486963|ref|YP_616524.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256] gi|118600899|sp|Q1GT31|RSMA_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|98977040|gb|ABF53191.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256] Length = 271 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 153/270 (56%), Gaps = 3/270 (1%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ + + + K +GQNFL D +L +IA G LDG TV E+G GPG LT+ LL Sbjct: 2 PPLRETVRVHGLSASKALGQNFLFDEQLLDRIAAIPGDLDGATVFEVGPGPGGLTRALLR 61 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR VI +E+D++ P+L D++ P +L +I DDA+ VD + P I+ANLPY Sbjct: 62 TGAR-VIAVERDERCLPLLADLAEAFPGQLTVIADDAMAVDVDALTG-GDPYHIVANLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT L W+ WPP W SLTL+FQ EV ERI A + YGRL+VL WR +A + Sbjct: 120 NVGTALFTRWLEPAAWPPRWLSLTLMFQLEVAERIVAPVGTSAYGRLAVLAQWRARARIA 179 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246 + F P PKV S ++ P P L ++T++ FG+RRK LRQSLK + G Sbjct: 180 MKVHRSAFTPPPKVMSAIVQLTPADQPPGVDPRILSRLTEKGFGQRRKMLRQSLKGIDGA 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 GI+ RAE +S+ ++ + L Sbjct: 240 VAAAEALGIDPTRRAETVSVAEWVALARAL 269 >gi|325569335|ref|ZP_08145491.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC 12755] gi|325157335|gb|EGC69496.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC 12755] Length = 295 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 150/290 (51%), Gaps = 21/290 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL+ + KK +GQNFL + NIL+KI E++G + VIE+G G G LT+ L Sbjct: 10 PSRTKEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRI 121 A++V+ E D + P+L D + N ++II D L+ D +F + ++ +++ Sbjct: 70 KQ-AKQVLAFEIDDRLIPVLADTMQPYAN-VKIIHQDVLQADLSTTIRSEFSDTAASLKV 127 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ +++ + + + ++ QKEV +RI+A + YG LS+ + Sbjct: 128 VANLPYYITTPIMMHFLESQVP---VDEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYY 184 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQ 239 +A + F + VF P P V S ++ P + K+T+ AF RRKTL Sbjct: 185 MEAKLAFIVPKTVFVPQPNVDSAILKLTRRPQPAVAVTDEKEFFKLTKAAFQLRRKTLWN 244 Query: 240 SLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L+ G++ L +GI+ R E LS+ +F +++N + + Sbjct: 245 NLQNSYGKDEETKQWLADSLEASGIDPKRRGETLSLAEFAKLSNEMQARK 294 >gi|302669432|ref|YP_003829392.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus B316] gi|302393905|gb|ADL32810.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus B316] Length = 292 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 19/288 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + K +L+ + + KK GQNFL+D +L I ++G V+EIG G G+LT Sbjct: 4 LGNPART-KEVLAKFGMSAKKKFGQNFLIDSGVLDGIVSAAGVTKDDCVLEIGPGIGSLT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A KV+ +E D+ P+L D S++ N + +I +D LKVD E +N +PI Sbjct: 63 QYLAES-AGKVVAVEIDKTLIPVLADTLSEYDN-VTVINEDVLKVDIEAIVKEYNGGNPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ G Sbjct: 121 KVVANLPYYITTPIIMKLFESGAP---IESITVMVQKEVADRMAMGPGNKDYGSLSLAVG 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237 + KA+ + D+ P F P P V S V+ + P C + + +I + +F +RRKTL Sbjct: 178 YYAKASEVMDVPPSSFIPQPGVGSAVVKLTRYSEPAVCVQDEKYMFEIIRTSFNQRRKTL 237 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL + L + GI+ R E LS+E F R+++IL Sbjct: 238 SNSLANNPALRVSRDQVQAALAEMGIDEKARGEILSLEQFARLSDILQ 285 >gi|205372007|ref|ZP_03224825.1| dimethyladenosine transferase [Bacillus coahuilensis m4-4] Length = 294 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 145/294 (49%), Gaps = 20/294 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K IL + KK +GQNFL+D NIL+ I E++G +E+G G G Sbjct: 1 MKDIATPIRTKEILQKHGFSFKKSLGQNFLIDPNILRNITEAAGLTKEFGAVEVGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A+KV+ E DQ+ PIL+D S + N +EII D LK D E + F+ Sbjct: 61 LTEHLA-RSAKKVVSFEIDQRLVPILEDTLSPYDN-VEIILQDFLKADVESVLREQFSPD 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+ ++ANLPY I T ++ + + + ++ QKEV +RI+A+ + YG LS+ Sbjct: 119 DPLMLVANLPYYITTPIIMRVLLERLP---IDRIVVMLQKEVADRISAKPGTKEYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + T+A + + VF P P V S VI PI + +T+ +F +RR Sbjct: 176 AIQYYTEAETVMIVPKTVFMPQPNVDSAVIRLTKRKEPIARVEDEDFFFTVTRASFAQRR 235 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT+ +L E L G++ R E LSIE+F ++N L + Sbjct: 236 KTILNNLSSQLVEGKNKKDLLVQCLESVGVDPTRRGETLSIEEFAELSNALYPH 289 >gi|50122780|ref|YP_051947.1| dimethyladenosine transferase [Pectobacterium atrosepticum SCRI1043] gi|115311578|sp|Q6D0E0|RSMA_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49613306|emb|CAG76757.1| dimethyladenosine transferase [Pectobacterium atrosepticum SCRI1043] Length = 272 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + R VIE D+ L+ ++L IIQ DA+ +DF P+R+ Sbjct: 53 APIGERMDR-FTVIELDRDLAARLEKH-PTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A NS +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKTFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKTLR Sbjct: 168 CQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAELPYPVSDIRMLSRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L + GI RAEN+++E +CR+ N L+++ Sbjct: 228 SLGNLFTPETLTELGINITSRAENVTVEQYCRLANWLSEH 267 >gi|289627688|ref|ZP_06460642.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868491|gb|EGH03200.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 268 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHWRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|257865533|ref|ZP_05645186.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30] gi|257871870|ref|ZP_05651523.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10] gi|257875149|ref|ZP_05654802.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20] gi|257799467|gb|EEV28519.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30] gi|257806034|gb|EEV34856.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10] gi|257809315|gb|EEV38135.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20] Length = 295 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 21/290 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL+ + KK +GQNFL + NIL+KI E++G + VIE+G G G LT+ L Sbjct: 10 PSRTKEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRI 121 A++V+ E D + P+L D + N ++II D L+ D F + ++ +++ Sbjct: 70 KH-AKQVLAFEIDDRLIPVLADTMQPYQN-VKIIHQDVLQADLATTIQSAFSDTAASLKV 127 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ +++ + + + ++ QKEV +RI+A + YG LS+ + Sbjct: 128 VANLPYYITTPIMMHFLESQVK---VDEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYY 184 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQ 239 +A + F + VF P P V S ++ P + K+T+ AF RRKTL Sbjct: 185 MEAKLAFIVPKTVFVPQPNVDSAILKLTRRSQPAVAVTDEKEFFKLTKAAFQLRRKTLWN 244 Query: 240 SLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L+ G++ L +GI+ R E LS+ +F +++N + + Sbjct: 245 NLQNSYGKDETTKQWLADSLEASGIDPKRRGETLSLAEFAKLSNEMQARK 294 >gi|311280966|ref|YP_003943197.1| dimethyladenosine transferase [Enterobacter cloacae SCF1] gi|308750161|gb|ADO49913.1| dimethyladenosine transferase [Enterobacter cloacae SCF1] Length = 273 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTPPHPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L ++L GI+ +RAEN+S+ +C++ N LT+N Sbjct: 228 SLGNLFTVDVLTGLGIDPAVRAENISVAQYCQMANWLTEN 267 >gi|257465501|ref|ZP_05629872.1| dimethyladenosine transferase [Actinobacillus minor 202] gi|257451161|gb|EEV25204.1| dimethyladenosine transferase [Actinobacillus minor 202] Length = 289 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 19/289 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ N H +K GQNFL D+NI+ I + +G ++EIG G G Sbjct: 1 MSHINSK-------KHLGHTARKRFGQNFLHDMNIIHGIVSAINPKNGQYLLEIGPGLGA 53 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----I 115 LT+ + L K+ V+E D+ L+ ++L II+ DAL+ +F ++F Sbjct: 54 LTEPVAEL-VDKLTVVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLDLKE 111 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +R+ NLPYNI T L+F+ + + + QKEV +R+ A NS YGRL+ Sbjct: 112 DEGVRVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLT 168 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKR 233 ++ + + + ++ P F P+PKV S V+ +PH P P + L ++T +AF +R Sbjct: 169 IMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKQIPHPVKDVYWLNRVTTQAFNQR 228 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 RKTLR +L L L GI+ N RAENL+I D+ R+ N L DN + Sbjct: 229 RKTLRNALSTLFSAEQLETLGIDLNARAENLNIADYARLANWLCDNPPL 277 >gi|170768489|ref|ZP_02902942.1| dimethyladenosine transferase [Escherichia albertii TW07627] gi|170122593|gb|EDS91524.1| dimethyladenosine transferase [Escherichia albertii TW07627] Length = 273 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L + GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSAEVLTEMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|77461356|ref|YP_350863.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1] gi|118600888|sp|Q3K5T2|RSMA_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77385359|gb|ABA76872.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1] Length = 272 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I S + G ++EIG G G LT +L GA ++ Sbjct: 3 EQYQHKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + N + Q DALK DF + +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH L+++ +EAF +RRKTLR +LK+L + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 AG++ +LR E L + F R+ + L + Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAEQ 264 >gi|170755195|ref|YP_001779707.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra] gi|259494244|sp|B1ID54|RSMA_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169120407|gb|ACA44243.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra] Length = 275 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 98/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL Sbjct: 3 TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLER- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL++ ++ N +I DALK++F + I+++ANLPY + Sbjct: 62 AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKINFNELMENKDSIKLVANLPYYV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + ++ Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 +SP+ F P PKV S VI P + + + +F RRKTL SLK L Sbjct: 178 VSPNSFIPKPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|325688925|gb|EGD30933.1| dimethyladenosine transferase [Streptococcus sanguinis SK115] Length = 290 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D S N + ++ D LKVD +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLSDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKSYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSYFGKSEETKGKLTAALERANLSPSVRGEALSLEEFARLADALKS 287 >gi|152999580|ref|YP_001365261.1| dimethyladenosine transferase [Shewanella baltica OS185] gi|160874199|ref|YP_001553515.1| dimethyladenosine transferase [Shewanella baltica OS195] gi|166221701|sp|A6WK59|RSMA_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028816|sp|A9L438|RSMA_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151364198|gb|ABS07198.1| dimethyladenosine transferase [Shewanella baltica OS185] gi|160859721|gb|ABX48255.1| dimethyladenosine transferase [Shewanella baltica OS195] gi|315266431|gb|ADT93284.1| dimethyladenosine transferase [Shewanella baltica OS678] Length = 268 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + + V+E D+ L ++L I Q DAL+ DF + +++ Sbjct: 53 EPVAE-AVDNLTVVELDRDLVERLHHH-PVLKDKLTIHQGDALQFDFGQLSVPGKKMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ PH F P+PKV S V+ +P+ P PC + L+ + AF RRKTLR + Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + ++ Q GI+++ R E +S++ + + N++ D + Sbjct: 228 LKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267 >gi|300724851|ref|YP_003714176.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297631393|emb|CBJ92090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Xenorhabdus nematophila ATCC 19061] Length = 269 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 146/282 (51%), Gaps = 16/282 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H +K GQNFL D I+ I ++ G V+EIG G G LT Sbjct: 1 MNNKVHQ--------GHHARKRFGQNFLTDQFIIHSIVDAMNPQIGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + K+ V+E D+ L + + ++L IIQ DA+ VDF + +RI Sbjct: 53 EPVGER-MDKMTVVELDRDLAARLH-VHPKLKDKLTIIQQDAMTVDFGQIAKERGQSLRI 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + ++ + QKEV R+ A S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMSFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ IPH P P + L +IT +AF +RRKT+R Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKTIPHPVHDIRILARITTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL + L + G++ RAEN+S+E +C++ N L+ + Sbjct: 228 SLSHIFSVEQLSELGVDPGTRAENISVEQYCKMANWLSSQSE 269 >gi|322514872|ref|ZP_08067890.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976] gi|322119176|gb|EFX91321.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976] Length = 289 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 142/272 (52%), Gaps = 12/272 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D+N++ I + +G ++EIG G G LT+ + K+ Sbjct: 8 KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQ-VDKLT 66 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNI 129 V+E D+ L+ ++L II+ DAL+ +F ++F N S IR+ NLPYNI Sbjct: 67 VVELDRDLAGRLRHH-PFLNHKLTIIEQDALRFNFREYFESLELNESEGIRVFGNLPYNI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + + Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLE 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ +PH + L +T +AF +RRKTLR +L L Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNCVTTQAFNQRRKTLRNALSTLFSP 242 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ N RAENLSI D+ R+ N L DN Sbjct: 243 EQLEALNIDLNARAENLSIADYARLANWLYDN 274 >gi|157147529|ref|YP_001454848.1| dimethyladenosine transferase [Citrobacter koseri ATCC BAA-895] gi|166221659|sp|A8ALP9|RSMA_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157084734|gb|ABV14412.1| hypothetical protein CKO_03329 [Citrobacter koseri ATCC BAA-895] Length = 273 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ ++F + I P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSEKIGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L + GI+ LRAEN+S+ +C++ N L++N Sbjct: 228 SLGNLFSVEVLTELGIDPALRAENISVAQYCQMANYLSEN 267 >gi|126173221|ref|YP_001049370.1| dimethyladenosine transferase [Shewanella baltica OS155] gi|217974469|ref|YP_002359220.1| dimethyladenosine transferase [Shewanella baltica OS223] gi|166221700|sp|A3D188|RSMA_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807883|sp|B8EB35|RSMA_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|125996426|gb|ABN60501.1| dimethyladenosine transferase [Shewanella baltica OS155] gi|217499604|gb|ACK47797.1| dimethyladenosine transferase [Shewanella baltica OS223] Length = 268 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + + V+E D+ L ++L I Q DAL+ DF + +++ Sbjct: 53 EPVAE-AVDNLTVVELDRDLVERLHHH-PVLKDKLTIHQGDALQFDFGQLSVPGKKMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ PH F P+PKV S V+ +P+ P PC + L+ + AF RRKTLR + Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + ++ Q GI+++ R E +S++ + + N++ D + Sbjct: 228 LKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267 >gi|119474855|ref|ZP_01615208.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2143] gi|119451058|gb|EAW32291.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2143] Length = 267 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 7/264 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQNFL D I+ +IA + + D ++EIG G G LT +L G ++ IE Sbjct: 8 QHRARKRFGQNFLQDQGIIHRIARAVHATDKDHIVEIGPGQGALTTDILAGGC-QLDAIE 66 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ PIL+ S+ P R + Q DAL DF +R++ NLPYNI T L+F Sbjct: 67 LDRDLIPILQQQFSEQP-RFHLHQGDALTFDFSSLVKGEEKLRVVGNLPYNISTPLIFRL 125 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + Q EV R+ A S YGRLS++ + +F++ P F P Sbjct: 126 LDQHE---MIQDMHFMLQLEVVNRLAASPGSKSYGRLSIMAQYYCDIHSLFEVPPEAFSP 182 Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ P+ P +++L+ + + F +RRKTLR SLK + + I Sbjct: 183 RPKVQSAIVRLTPYKQPPHPAKNIKTLQALLRTCFNQRRKTLRNSLKNDLSSDQMEALDI 242 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 + R E LS+E F ++N + + Sbjct: 243 NPSARPETLSLEQFVNMSNSIETS 266 >gi|127511813|ref|YP_001093010.1| dimethyladenosine transferase [Shewanella loihica PV-4] gi|166221702|sp|A3QBA3|RSMA_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126637108|gb|ABO22751.1| dimethyladenosine transferase [Shewanella loihica PV-4] Length = 269 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDSNVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + K+ V+E D+ L+ ++LEI Q DALK DF++ +++ Sbjct: 53 EPVAES-IDKLTVVELDKDLVERLQ-THPFLKDKLEIHQGDALKFDFKQLVEEGKQMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ E++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFEFAEH---IENMHFMLQKEVVLRLSAAPGTKAYGRLTVMAQYFC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P PKV S V+ +P+ P PC ++ L+ + AF RRKTLR + Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKEKPYPCKDVDLLRHLCTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK+L ++ GI+ ++R E ++++ + + N L D + Sbjct: 228 LKQLLNDDDFSALGIDASMRPEQITVQQYVAMANHLVDKR 267 >gi|94499972|ref|ZP_01306507.1| dimethyladenosine transferase [Oceanobacter sp. RED65] gi|94427830|gb|EAT12805.1| dimethyladenosine transferase [Oceanobacter sp. RED65] Length = 266 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 91/267 (34%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D N+++ I +S G ++EIG G G +T+ LL ++ V+E Sbjct: 2 GHQARKRFGQNFLHDPNVIRNIVKSIRPKVGDRIVEIGPGMGAITEELLDATEGELDVVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFN 136 D+ P LK H I + DALK DF +RI+ NLPYNI T L+F+ Sbjct: 62 LDRDLIPGLKVKFFNHKG-FRIHESDALKFDFATLKQAPEEQLRIVGNLPYNISTPLIFH 120 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + + + QKEV +R+ A +YGRLS++ + + MFD+ P F Sbjct: 121 LLS---YSGLVKDMHFMLQKEVVQRLAAGPGDNNYGRLSIMAQYYCQVQHMFDVGPGAFK 177 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+PKV S ++ +PH + P P ++ ++I +E+F RRKTLR +LK+ L + G Sbjct: 178 PAPKVDSAIVRMVPHQDLPYPVKDHKTFERIVRESFAMRRKTLRNNLKKTISSEELEKLG 237 Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281 I+ LR E L + ++ RI + + + D Sbjct: 238 IDPALRPERLGLPEYTRIADYIYERAD 264 >gi|190149692|ref|YP_001968217.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263000|ref|ZP_07544622.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226729747|sp|B3H0R3|RSMA_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189914823|gb|ACE61075.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871626|gb|EFN03348.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 289 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 91/272 (33%), Positives = 141/272 (51%), Gaps = 12/272 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D+N++ I + +G ++EIG G G LT+ + K+ Sbjct: 8 KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQ-VDKLT 66 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYNI 129 V+E D+ L+ ++L II+ DAL+ +F ++F +R+ NLPYNI Sbjct: 67 VVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + + Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLE 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ +PH + L ++T +AF +RRKTLR +L L Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSP 242 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ N RAENLSI D+ R+ N L DN Sbjct: 243 EQLEALSIDLNARAENLSIADYARLANWLYDN 274 >gi|168182310|ref|ZP_02616974.1| dimethyladenosine transferase [Clostridium botulinum Bf] gi|237793398|ref|YP_002860950.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657] gi|259494242|sp|C3KXY4|RSMA_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|182674690|gb|EDT86651.1| dimethyladenosine transferase [Clostridium botulinum Bf] gi|229261997|gb|ACQ53030.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657] Length = 275 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 150/276 (54%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL Sbjct: 3 TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 62 AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNRLMENKDSIKLVANLPYYV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + ++ Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCDTKIIRK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 +SP+ F P PKV S VI P + + + +F RRKTL SLK L Sbjct: 178 VSPNCFIPRPKVDSIVIKLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI++ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273 >gi|327488831|gb|EGF20630.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058] Length = 290 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRGFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKSYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + KI++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKISKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADALKS 287 >gi|312963419|ref|ZP_07777901.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6] gi|311282225|gb|EFQ60824.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6] Length = 270 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 139/265 (52%), Gaps = 7/265 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 HY+ +K GQNFL D ++ +I S + ++EIG G G LTQ LL G ++ Sbjct: 3 EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + N + Q DALK DF + +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ ++ + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH + L+++ +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 AG++ +LR E L + F R+ + L Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262 >gi|91794239|ref|YP_563890.1| dimethyladenosine transferase [Shewanella denitrificans OS217] gi|123356543|sp|Q12K59|RSMA_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91716241|gb|ABE56167.1| dimethyladenosine transferase [Shewanella denitrificans OS217] Length = 267 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D +I+ +I + + ++EIG G G +T Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAIT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + K+ V+E D+ L++ ++L+I Q DAL+ DF +++ Sbjct: 53 EPVAMS-IDKLSVVELDRDLVERLQNH-PTLKDKLDIHQGDALQFDFSTLQQAGKKMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEIIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYYC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ PH F P+PKV S V+ +P+ N P PC + L+ + AF RRKTLR + Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYANKPWPCKDVTVLRHLCTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK+L + I+ +LR E +S+E + + N+L D Q Sbjct: 228 LKQLISDEEFGLLNIDASLRPEQISVEQYVALANLLCDKQ 267 >gi|165975860|ref|YP_001651453.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226729748|sp|B0BTQ4|RSMA_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|165875961|gb|ABY69009.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 289 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 12/272 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D+N++ I + +G + EIG G G LT+ + K+ Sbjct: 8 KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLFEIGPGLGALTEPVAEQ-VDKLT 66 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYNI 129 V+E D+ L+ ++L II+ DAL+ +F ++F +R+ NLPYNI Sbjct: 67 VVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLELKEGEGVRVFGNLPYNI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + + Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVVPVLE 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ +PH + L ++T +AF +RRKTLR +L L Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSP 242 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ N RAENLSI D+ R+ N L DN Sbjct: 243 EQLEALNIDLNARAENLSIADYARLANWLYDN 274 >gi|119775951|ref|YP_928691.1| dimethyladenosine transferase [Shewanella amazonensis SB2B] gi|166221699|sp|A1S9G5|RSMA_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119768451|gb|ABM01022.1| dimethyladenosine transferase [Shewanella amazonensis SB2B] Length = 267 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D NI+ +I + D ++EIG G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDGNIINRIVGAISPDDDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + G + + VIE D+ LK + ++L I Q DA+K DF + +++ Sbjct: 53 EPVAM-GIKNLTVIELDRDLAERLK-VHPTLKDKLTIHQGDAMKFDFSQLVEPERKLKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ E++ + QKEV R++A + YG+L+V+ + Sbjct: 111 GNLPYNISTPLMFHLFEFAEH---IENMHFMLQKEVVLRLSASPGTKAYGKLTVMAQYYC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P PKV S V+ +P+ P PC +E L+K+ AF RRKTLR + Sbjct: 168 QVVPVLEVPPGCFTPPPKVDSAVVRLVPYAEKPWPCHDVEMLRKVCNTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK L + GI+ LR E++S+ + + N L + + Sbjct: 228 LKPLLQDADFDVLGIDAGLRPEDISVAQYVAMANYLCEKR 267 >gi|323181748|gb|EFZ67161.1| dimethyladenosine transferase [Escherichia coli 1357] gi|323945789|gb|EGB41836.1| dimethyladenosine transferase [Escherichia coli H120] Length = 273 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ ++RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSAEVLTGMGIDPSMRAENISVAQYCQMANYLAENAPL 270 >gi|210623277|ref|ZP_03293694.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275] gi|210153678|gb|EEA84684.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275] Length = 286 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 16/290 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + K I+ + K +GQNFL+D N++ KI + + +G VIE+G G G Sbjct: 1 MDRLSSHRATKDIVDKHGFKFSKSLGQNFLIDDNVIDKIIDGARVKEGDKVIEVGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ + A KV+ +E D+ PILK+ + N E++ +D LKVD K + Sbjct: 61 LTREMAKR-AEKVVAVEIDKNLIPILKETLADFDNT-EVVNEDILKVDINKLVDEKLSGG 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+++IANLPY I T ++ ++ D + ++ QKEV +R+ A ++ YG LSV Sbjct: 119 PVKLIANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAVPSTKDYGALSVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235 + ++ H+F P PKV STVI H + K + AFG+RRK Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPKVDSTVIGLHIREERKYKADNEQLFFKTVKAAFGQRRK 235 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 TL SL +G + +L +AGI+ R E LSIE+F ++NI+ N Sbjct: 236 TLLNSLSSMGVLDKAKIKEVLAEAGIDEKRRGETLSIEEFAHLSNIINKN 285 >gi|290474828|ref|YP_003467708.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Xenorhabdus bovienii SS-2004] gi|289174141|emb|CBJ80928.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Xenorhabdus bovienii SS-2004] Length = 274 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 146/284 (51%), Gaps = 16/284 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK H +K GQNFL D I++ I ++ G ++EIG G G LT Sbjct: 1 MNNKVHQ--------GHYARKRFGQNFLTDQFIIESIVDAMNPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + K+ V+E D+ L + + ++L IIQ DA+ VDF + + +R+ Sbjct: 53 EPVGER-MDKMTVVELDRDLAARLH-VHPKLKDKLTIIQQDAMTVDFGQLAKDQGQSLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S ++ + QKEV R+ A YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYADA---IADMSFMLQKEVVNRLVAGPGCKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S ++ +PH P P + L ++T +AF +RRKT+R Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAIVRLMPHKAMPYPVKDIRMLARVTTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 SL L L + G++ RAEN+S+E +C++ + L+ A Sbjct: 228 SLGDLFSVEQLSELGVDPGTRAENISVEQYCKMASWLSSQAKTA 271 >gi|294139568|ref|YP_003555546.1| dimethyladenosine transferase [Shewanella violacea DSS12] gi|293326037|dbj|BAJ00768.1| dimethyladenosine transferase [Shewanella violacea DSS12] Length = 272 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 144/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H KK GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH--------LGHTAKKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + K+ V+E D+ L + ++LEI Q DAL DF + +++ Sbjct: 53 EPVAES-IDKLTVVELDKDLVARLHEH-PTLKHKLEIHQGDALNFDFSQLIEEGKELKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + + + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFEFAEH---IKHMHFMLQKEVVLRLSATPGTKAYGRLTVMAQYHC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P+PKV S V+ +P+ P PC +E L+++T AF RRKTLR + Sbjct: 168 QIMPVLEVPPECFTPAPKVNSAVVRLVPYKQKPWPCSDVEFLRRMTTTAFSMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + + I+++LR E +++E + + N+L D + Sbjct: 228 LKHMITDEEFLALNIDSSLRPEQITVEQYVSMANMLLDKK 267 >gi|237729348|ref|ZP_04559829.1| dimethyladenosine transferase [Citrobacter sp. 30_2] gi|226909077|gb|EEH94995.1| dimethyladenosine transferase [Citrobacter sp. 30_2] Length = 273 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D +++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAQTMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPAPKVDSAVVRLVPHTTMPYPVKDVRVLSRITTEAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L + GI+ +RAEN+S+ +CR+ N L++N Sbjct: 228 SLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267 >gi|283835115|ref|ZP_06354856.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220] gi|291069414|gb|EFE07523.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220] Length = 273 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D +++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAQTMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPAPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRRKTVRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L + GI+ +RAEN+S+ +CR+ N L++N Sbjct: 228 SLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267 >gi|256823429|ref|YP_003147392.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069] gi|256796968|gb|ACV27624.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069] Length = 269 Score = 294 bits (753), Expect = 9e-78, Method: Composition-based stats. Identities = 104/266 (39%), Positives = 149/266 (56%), Gaps = 8/266 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 +K GQNFL D + +++I ES + ++EIG G G +T+ L+ ++ V+ Sbjct: 8 QGHQARKRFGQNFLSDNHYIQRIVESIAPQESDRLVEIGPGLGAITEHLVD-KVSELHVV 66 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ P L+ SQ+ N L I Q DALK DF + N PIR++ NLPYNI T L+F+ Sbjct: 67 ELDRDLIPRLEQKFSQNTN-LTIHQSDALKFDFRQLAN-DKPIRVVGNLPYNISTPLIFH 124 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + + + QKEV ERI AQ + YGRLSV+T + +A ++F + P F Sbjct: 125 LLNQRE---SIKDMYFMLQKEVVERICAQPGTSSYGRLSVMTQYYCQADLLFLVPPGAFQ 181 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P+ + P P E L +I AFG+RRKTLR SLK+ E L Q G Sbjct: 182 PPPKVESAIVRLQPYCDLPYPVQDEQLLGQIVTAAFGQRRKTLRNSLKKFINETGLEQLG 241 Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280 I+ RAE LS+ F I + + NQ Sbjct: 242 IKPTERAEQLSLSQFVDICHQVELNQ 267 >gi|62178655|ref|YP_215072.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484893|sp|Q57TH0|RSMA_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62126288|gb|AAX63991.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713108|gb|EFZ04679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 273 Score = 294 bits (753), Expect = 9e-78, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ ++L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGSKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270 >gi|304405864|ref|ZP_07387522.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9] gi|304345107|gb|EFM10943.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9] Length = 303 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 18/285 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + I+ Y KK +GQNFL+D NIL KI ++ +EIG G G LTQ L Sbjct: 18 PTRTRDIVKKYGFEFKKSLGQNFLIDQNILHKIVAAAELDGTKGALEIGPGIGALTQHLA 77 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122 A +V +E D + PIL+D + N +E++ D LK++ + F S I ++ Sbjct: 78 -RSAGRVTAVEIDNRLIPILRDTLAGEAN-VEVVHADVLKLNLHELFAERFEGLSGISVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + E + ++ QKEV +R+ A+ YG LSV + Sbjct: 136 ANLPYYVTTPILMKLLEERLP---LEHIVVMIQKEVADRMAAKPGGKEYGSLSVAVQYYC 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 + +++ + VF P P V S VI P + + Q +F +RRKTL + Sbjct: 193 EPSIVCTVPHTVFIPQPNVDSAVIKLSLREKPAVETRDEAHFFRTVQASFAQRRKTLMNN 252 Query: 241 LKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 + G++ ++ GI+ + R E LS+E+F +++ L D Sbjct: 253 MSSWIGKDHRETLTSIMEGCGIQPSRRGETLSLEEFAKLSAALYD 297 >gi|206578528|ref|YP_002240485.1| dimethyladenosine transferase [Klebsiella pneumoniae 342] gi|288937185|ref|YP_003441244.1| dimethyladenosine transferase [Klebsiella variicola At-22] gi|290512606|ref|ZP_06551972.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55] gi|226732590|sp|B5Y1Z4|RSMA_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|206567586|gb|ACI09362.1| dimethyladenosine transferase [Klebsiella pneumoniae 342] gi|288891894|gb|ADC60212.1| dimethyladenosine transferase [Klebsiella variicola At-22] gi|289774947|gb|EFD82949.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55] Length = 273 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 146/280 (52%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHRTMPYPVKEVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L + G++ +RAEN+S+E +C++ N L++N Sbjct: 228 SLGNLFSVEVLTELGVDPAVRAENISVEQYCKMANWLSNN 267 >gi|16763480|ref|NP_459095.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|20141600|sp|Q56016|RSMA_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|16418587|gb|AAL19054.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312911060|dbj|BAJ35034.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 273 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKEYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270 >gi|120556413|ref|YP_960764.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8] gi|226732595|sp|A1U6F8|RSMA_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120326262|gb|ABM20577.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8] Length = 276 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 88/266 (33%), Positives = 145/266 (54%), Gaps = 8/266 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + + +K GQNFL D ++++I + +++EIG G G +T+ +L + R + Sbjct: 3 NKHGHQARKRFGQNFLHDPGVIERIVRAINPKPEDSIVEIGPGLGAITEEILAINPR-LQ 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ P+L+ +P I + DAL DF + + P+RI+ NLPYNI T L+ Sbjct: 62 VVELDRDLIPVLRTKFFNYPE-FRIHEADALSFDFSQLVS-DRPLRIVGNLPYNISTPLI 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + + QKEV +R+ A +YGRL ++ + K +F++ P Sbjct: 120 FHLLSQSG---VVQDMHFMLQKEVVQRLAAVPGDNNYGRLGIMAQYFCKVQPLFEVGPGA 176 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S ++ +PH P P L++L+ + + AF RRKTLR++L + L Sbjct: 177 FRPAPKVDSAIVRLVPHKELPYPAKDLKTLQAVVRTAFNARRKTLRKALAAMVTVEQLQS 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278 GI LR ENL + D+ RI ++L D Sbjct: 237 LGINDGLRPENLGLADYVRIADLLAD 262 >gi|167760646|ref|ZP_02432773.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704] gi|167661771|gb|EDS05901.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704] Length = 291 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 147/288 (51%), Gaps = 19/288 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ IL Y+ +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTI-EILQKYQFTFQKKFGQNFLIDTHVLDKIIRAADIGKDDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KVI +E D+ PIL D S + N ++II +D LK+D ++ N P Sbjct: 64 TQYLAE-AAGKVIAVEIDKNLIPILTDTLSGYEN-VQIINEDVLKLDIQRLVEEENAGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + S+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---LYSVTVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + + ++ ++ P+ F P PKV S VI + P + L I + +F +RRKT Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRYEKPPVEVEDERLLFDIIRASFNQRRKT 238 Query: 237 LRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L L + Q G ++R E L++E+F +++N L Sbjct: 239 LANGLNNSDRLDVPKEAITEAIQQLGKGPSVRGETLTLEEFAKLSNSL 286 >gi|167646487|ref|YP_001684150.1| dimethyladenosine transferase [Caulobacter sp. K31] gi|167348917|gb|ABZ71652.1| dimethyladenosine transferase [Caulobacter sp. K31] Length = 288 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 116/270 (42%), Positives = 165/270 (61%), Gaps = 7/270 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +L+ + ++ K GQ+FLLDLNI +KIA +G +G TVIE+G GPG LT+ LL Sbjct: 22 PPLREVLAEHDLLANKSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGLTRTLLE 81 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR V+ +E D++F P+L+D+S RL I+Q DALKVD P +++NLPY Sbjct: 82 TGAR-VVAVEMDKRFLPLLEDLSVAADGRLTIVQGDALKVDMAAVA--GGPAHMVSNLPY 138 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT LL NW++ P S+TL+FQKEV +RI A + YGRL+V++ A ++ Sbjct: 139 NVGTPLLINWLTGPFRP---LSMTLMFQKEVADRIAADVDDDAYGRLAVVSQTVCTAKVV 195 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 D+ F P PKV S V+ +P P + +L+K+T AFG+RRK LR SLK LGG Sbjct: 196 MDLPARAFTPPPKVASAVVRLVPLTPAPDKAMVAALEKVTAAAFGQRRKMLRSSLKGLGG 255 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L +AGI + RAE + +E F + + Sbjct: 256 AALCEKAGINPDARAETIPVEGFQALARAV 285 >gi|56418570|ref|YP_145888.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426] gi|297528410|ref|YP_003669685.1| dimethyladenosine transferase [Geobacillus sp. C56-T3] gi|62900466|sp|Q5L3V8|RSMA_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56378412|dbj|BAD74320.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426] gi|297251662|gb|ADI25108.1| dimethyladenosine transferase [Geobacillus sp. C56-T3] Length = 293 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 22/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL+KI + + IEIG G G LT+ L Sbjct: 11 TKEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQLARR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIAN 124 A+KV+ E D + PIL D S + N + I D LK D E+ ++S ++AN Sbjct: 70 AKKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDR-MVVAN 127 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY + T ++ ++ + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 128 LPYYVTTPIIMKLLTERLP---IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEA 184 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242 ++ + VF P P V S VI + +P + ++ + +F +RRKTL +L Sbjct: 185 EVIMTVPRTVFMPQPNVDSAVIRLVKRQHPPVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E +L GI+ R E L I +F ++N L Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288 >gi|226947305|ref|YP_002802396.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto] gi|259494243|sp|C1FQ40|RSMA_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226840947|gb|ACO83613.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto] Length = 275 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 150/276 (54%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL Sbjct: 3 TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 62 AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + ++ Sbjct: 121 TTPIISRLLTEKCN---FKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 +SP+ F P PKV S VI P + + + +F RRKTL SLK L Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI++ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273 >gi|291526963|emb|CBK92549.1| dimethyladenosine transferase [Eubacterium rectale M104/1] Length = 288 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 153/287 (53%), Gaps = 19/287 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N +++ +L Y +K GQNFL+D IL++I +S+G ++EIG G G +T Sbjct: 4 LGNPKNTI-EVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L AR+VI +E D PILKD S++ N +++I DD LKVD +N PI Sbjct: 63 QYLCES-ARQVIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ A YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTL 237 + + ++ ++ P F P PKV S+VI + P + E L KI + +F +RRKTL Sbjct: 178 YYSHPEIVVNVPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTL 237 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L GG + + G+ N+R E LS+ F +++NI+ Sbjct: 238 ANGLNNFGGMGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284 >gi|168177414|ref|ZP_02612078.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916] gi|182671129|gb|EDT83103.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916] Length = 275 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 98/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y+ K +GQNFL+D ++L+ I E + TVIEIG G G LT+ LL Sbjct: 3 TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+++ IE D PIL++ ++ N +I DALK+DF + I+++ANLPY + Sbjct: 62 AKEIYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ ++ ++SLT++ QKEV ERI A+ N YG L+VL + ++ Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246 +SP+ F P PKV S VI P + + + +F RRKTL SLK L Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 EN +AGI+ R E LSIE+F ++++ + D Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273 >gi|62900532|sp|Q6LV41|RSMA_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 271 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 138/270 (51%), Gaps = 7/270 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G LT+ + L K V Sbjct: 7 HLGHRARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSV 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 66 IELDRDLAKRLRHH-PDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV R+ A YGRL+V+ + ++ T + ++ P F Sbjct: 125 HLFTFHEH---VEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESF 181 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L Sbjct: 182 TPAPKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDL 241 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 G+ LR EN++++ F ++ N L N A Sbjct: 242 GVNPGLRPENITLQQFVKMANWLDANHQNA 271 >gi|291526466|emb|CBK92053.1| dimethyladenosine transferase [Eubacterium rectale DSM 17629] Length = 292 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 153/287 (53%), Gaps = 19/287 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N +++ +L Y +K GQNFL+D IL++I +S+G ++EIG G G +T Sbjct: 4 LGNPKNTI-EVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L AR+VI +E D PILKD S++ N +++I DD LKVD +N PI Sbjct: 63 QYLCES-ARQVIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ A YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTL 237 + + ++ ++ P F P PKV S+VI + P + E L KI + +F +RRKTL Sbjct: 178 YYSHPEIVVNVPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTL 237 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L GG + + G+ N+R E LS+ F +++NI+ Sbjct: 238 ANGLNNFGGMGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284 >gi|325579206|ref|ZP_08149162.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC 33392] gi|325159441|gb|EGC71575.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC 33392] Length = 287 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVSAIHPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H RL +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-RLTVIETDAMQFDFGELYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 AEDLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|170725376|ref|YP_001759402.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908] gi|226732625|sp|B1KGH9|RSMA_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169810723|gb|ACA85307.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908] Length = 267 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + K+ V+E D+ L++ ++L+I Q DAL+ DF + +++ Sbjct: 53 EPVA-NAIDKLTVVELDKDLVARLQEH-PTLKDKLDIHQGDALQFDFSQLVEEGRQMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P PKV S V+ +P+ P PC ++ L+ +T AF RRKTLR + Sbjct: 168 QVMPVLEVPPGSFTPPPKVDSAVVRLVPYKVKPWPCKDVDQLRHLTTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + + + GI+ LR E +++E + + N + D Q Sbjct: 228 LKHMISDEEFAELGIDATLRPEQITVEQYVAMANFVVDKQ 267 >gi|261417535|ref|YP_003251217.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61] gi|319765192|ref|YP_004130693.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52] gi|261373992|gb|ACX76735.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61] gi|317110058|gb|ADU92550.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52] Length = 293 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 22/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL+KI + + IEIG G G LT+ L Sbjct: 11 TKEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQLARR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIAN 124 A+KV+ E D + PIL D S + N + I D LK D E+ ++S ++AN Sbjct: 70 AKKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDR-MVVAN 127 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY + T ++ ++ + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 128 LPYYVTTPIIMKLLTDRLP---IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEA 184 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242 ++ + VF P P V S VI + +P + ++ + +F +RRKTL +L Sbjct: 185 EVIMTVPRTVFMPQPNVDSAVIRLVKRQHPPVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244 Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E +L GI+ R E L I +F ++N L Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288 >gi|194467627|ref|ZP_03073614.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23] gi|194454663|gb|EDX43560.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23] Length = 297 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 159/299 (53%), Gaps = 27/299 (9%) Query: 3 MNNKS-----HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I+ Y I KK GQNFL DLN+LK I E++ D VIEIG G Sbjct: 1 MSNSPEIGSRTRTRAIMEKYGIHTKKSFGQNFLTDLNVLKNIVEAADITDNDNVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113 G LT+ L A +V+ +E DQ P+LK++ S + N +++I D L+ + + Sbjct: 61 IGALTEQLA-QAAGEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEF 118 Query: 114 -NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 + S PI+++ANLPY I + +L N +++ P W ++ ++ QKEV +R+TA+ + YG Sbjct: 119 KDPSRPIKVVANLPYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYG 175 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEA 229 L++ ++ +A + FD+S VF PSP V S ++ P NP+P + L + Sbjct: 176 ALTLAIEYQMQAKIAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGC 235 Query: 230 FGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F RRK+L +L+ + G++ +L Q I +R E L++E F + N L Sbjct: 236 FAHRRKSLWNNLQSVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANALHQQ 294 >gi|296101215|ref|YP_003611361.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055674|gb|ADF60412.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 273 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MTNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DELTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P L L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L ++L + GI+ +RAEN+S+E +C++ N +++N Sbjct: 228 SLGNLFTVDVLAELGIDPAMRAENISVEQYCKLANYISEN 267 >gi|237809113|ref|YP_002893553.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187] gi|259494261|sp|C4L9L4|RSMA_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|237501374|gb|ACQ93967.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187] Length = 268 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 138/267 (51%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D + I + ++EIG G G LT+ + K+ V Sbjct: 7 HLGHRARKRFGQNFLHDQYTIDSIVSAIAPRQNDVMVEIGPGLGALTEPVCDQ-IDKLHV 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L++ + ++L + + DA+K +F++ P+RI NLPYNI T L+F Sbjct: 66 VELDRDLAARLREH-PRLKDKLIVHEADAMKFNFDELAQPGRPLRIFGNLPYNISTPLIF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + + QKEV ER+ A NS YGRL+V+T + + + ++ PH F Sbjct: 125 HLLEKSQ---YITDMYFMLQKEVVERLAAGPNSKDYGRLTVMTQYYCQVMPVLEVGPHAF 181 Query: 196 FPSPKVTSTVIHFIP-HLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P P + L+++ QE FG+RRKT+R + + L + Sbjct: 182 KPAPKVNSAVVRLAPWKKRPYEALNIADLQRVCQEGFGQRRKTIRNTFRSFITAEQLEEI 241 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 I NLR ENL++ F I N LT ++ Sbjct: 242 DINPNLRPENLTLAQFVSIANWLTTHR 268 >gi|148553332|ref|YP_001260914.1| dimethyladenosine transferase [Sphingomonas wittichii RW1] gi|148498522|gb|ABQ66776.1| dimethyladenosine transferase [Sphingomonas wittichii RW1] Length = 276 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 108/271 (39%), Positives = 160/271 (59%), Gaps = 4/271 (1%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +++ + + K +GQNFLLD +L +IA G LDG TV E+G GPG LT+ LL Sbjct: 9 PPLREVIARHGLSANKALGQNFLLDGQLLDRIARVPGDLDGATVYEVGPGPGGLTRALLG 68 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GA V+ +E+D + L++++ RL +I DA+K+D + I +NLPY Sbjct: 69 AGA-SVVAVERDDRCLAALEELNQASGGRLRVISADAMKID--ERAEAGDGAHIASNLPY 125 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT L W++ D WPP+W SLTL+FQKEV ERI A+ S YGRL+VL WR + Sbjct: 126 NVGTALFVRWMTLDAWPPWWRSLTLMFQKEVAERIVAKPGSAAYGRLAVLAQWRATPVIA 185 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246 ++ F P PKV S ++H +P P + +++ +T AFG+RRK LRQSLK + G Sbjct: 186 MNVHRSAFVPPPKVMSAIVHVVPAAQPEGASMATIETLTAAAFGQRRKMLRQSLKGVKGA 245 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI+ RAE +++++F + L+ Sbjct: 246 VEALATVGIDPERRAETVTVDEFVALARALS 276 >gi|293375923|ref|ZP_06622184.1| dimethyladenosine transferase [Turicibacter sanguinis PC909] gi|325838710|ref|ZP_08166625.1| dimethyladenosine transferase [Turicibacter sp. HGF1] gi|292645445|gb|EFF63494.1| dimethyladenosine transferase [Turicibacter sanguinis PC909] gi|325490760|gb|EGC93067.1| dimethyladenosine transferase [Turicibacter sp. HGF1] Length = 291 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 144/292 (49%), Gaps = 18/292 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ + KK GQNFL D NIL KI ++ D + VIEIG G G Sbjct: 1 MRDIATKSNTKEIIEKHGFTFKKSFGQNFLTDTNILNKIVNAADLNDEVGVIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ + A+KV+ E D + PIL + + + N +++I D LK D E+ F Sbjct: 61 LTEFIA-RKAKKVVAYEIDPRLIPILAETLAPYDN-VKVIHQDILKADVASMIEEEFKDV 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I ++ANLPY I T +L I ++ + QKEV ER++A S Y LS+ Sbjct: 119 KHIAVVANLPYYITTPILMGLIEKKLPIDWY---VTMMQKEVAERLSANPGSKDYNALSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + T+A + ++ VF P+P V S+V+ P + +I AF +RR Sbjct: 176 AVQYYTEAKIALNVPKTVFIPAPNVDSSVVKLTKREQPAVAVENEDFFLEIVHAAFKQRR 235 Query: 235 KTLRQSLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KT++ +L + + LL +AGI + R E L+IE+F ++N+ + Sbjct: 236 KTIQNNLNQHFNDLAKEDVTKLLEEAGIVPSRRGETLTIEEFGHLSNVFYKH 287 >gi|226946690|ref|YP_002801763.1| dimethyladenosine transferase [Azotobacter vinelandii DJ] gi|226721617|gb|ACO80788.1| dimethyladenosine transferase [Azotobacter vinelandii DJ] Length = 272 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/269 (34%), Positives = 140/269 (52%), Gaps = 7/269 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ +I + ++EIG G G LT+ LL GAR + Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHPRADERLVEIGPGQGALTEGLLGSGAR-LD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE D P+LK P R + Q DALK DF + +RI+ NLPYNI T L+ Sbjct: 62 VIELDLDLIPLLKLKFGLEP-RFHLHQGDALKFDFARLCGTPHSLRIVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV ER+ A+ +GRLS++ + + +F++ P Sbjct: 121 FHLLEHAG---LIRDMHFMLQKEVVERLAAEPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +PH P P L++I +EAF +RRKTLR +LK L + Sbjct: 178 FNPPPKVDSAIVRLVPHETLPHPARDPALLERIVREAFNQRRKTLRNTLKGLLAATDIEA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281 AG++ +LR E L + F R+ + L + Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADHLHARTE 266 >gi|261344781|ref|ZP_05972425.1| hypothetical protein PROVRUST_06046 [Providencia rustigianii DSM 4541] gi|282567226|gb|EFB72761.1| dimethyladenosine transferase [Providencia rustigianii DSM 4541] Length = 269 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 98/279 (35%), Positives = 147/279 (52%), Gaps = 16/279 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I ++ G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVDAMHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + K+ V+E D+ L + Q ++L IIQ DA+ VDF + PIR+ Sbjct: 53 EPVGSR-MDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPIRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A S +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ IPH NP P ++ L +IT +AF +RRKT+R Sbjct: 168 CNVVPVLEVPPTSFTPAPKVDSAVVRLIPHRENPYPVKDIKMLSRITTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 SL L L + GI+ RAEN+S+ +C++ N L++ Sbjct: 228 SLGDLLSVEQLIELGIDPGTRAENISVAHYCKMANYLSN 266 >gi|16759085|ref|NP_454702.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140635|ref|NP_803977.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412361|ref|YP_149436.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161612426|ref|YP_001586391.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550727|ref|ZP_02344484.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167989953|ref|ZP_02571053.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230359|ref|ZP_02655417.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243503|ref|ZP_02668435.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262232|ref|ZP_02684205.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820928|ref|ZP_02832928.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450226|ref|YP_002044058.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470287|ref|ZP_03076271.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249198|ref|YP_002145074.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263010|ref|ZP_03163084.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361298|ref|YP_002140933.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244097|ref|YP_002214042.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389272|ref|ZP_03215884.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926662|ref|ZP_03217864.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351430|ref|YP_002225231.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855603|ref|YP_002242254.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161029|ref|ZP_03346739.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427533|ref|ZP_03360283.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648900|ref|ZP_03378953.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224581932|ref|YP_002635730.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911148|ref|ZP_04654985.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826183|ref|ZP_06545295.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|27151585|sp|Q8Z9J7|RSMA_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900478|sp|Q5PDD9|RSMA_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028815|sp|A9MYM4|RSMA_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732616|sp|B5F771|RSMA_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732617|sp|B5FI34|RSMA_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732618|sp|B5R1S8|RSMA_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732619|sp|B5RGC2|RSMA_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732620|sp|B4TJ47|RSMA_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732622|sp|B5BL27|RSMA_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807882|sp|C0Q5E7|RSMA_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|25286076|pir||AF0513 dimethyladenosine transferase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501375|emb|CAD01246.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136259|gb|AAO67826.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126618|gb|AAV76124.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161361790|gb|ABX65558.1| hypothetical protein SPAB_00115 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408530|gb|ACF68749.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456651|gb|EDX45490.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092773|emb|CAR58198.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212901|gb|ACH50298.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241265|gb|EDY23885.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938613|gb|ACH75946.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606370|gb|EDZ04915.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323327|gb|EDZ08522.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271211|emb|CAR35999.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324333|gb|EDZ12172.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331535|gb|EDZ18299.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335041|gb|EDZ21805.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337400|gb|EDZ24164.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342515|gb|EDZ29279.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348868|gb|EDZ35499.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707406|emb|CAR31679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466459|gb|ACN44289.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245323|emb|CBG23111.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991761|gb|ACY86646.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156719|emb|CBW16193.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320084328|emb|CBY94121.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222340|gb|EFX47412.1| Dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615911|gb|EFY12828.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620696|gb|EFY17556.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623953|gb|EFY20790.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627401|gb|EFY24192.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630708|gb|EFY27472.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638072|gb|EFY34773.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640558|gb|EFY37209.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647698|gb|EFY44183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648048|gb|EFY44515.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656920|gb|EFY53206.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657369|gb|EFY53641.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663689|gb|EFY59889.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666522|gb|EFY62700.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672319|gb|EFY68431.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676369|gb|EFY72440.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679538|gb|EFY75583.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686133|gb|EFY82117.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323128408|gb|ADX15838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194977|gb|EFZ80163.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200114|gb|EFZ85201.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201065|gb|EFZ86134.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209462|gb|EFZ94395.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212286|gb|EFZ97110.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216591|gb|EGA01317.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222470|gb|EGA06840.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225781|gb|EGA10001.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228678|gb|EGA12807.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236708|gb|EGA20784.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239791|gb|EGA23838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242161|gb|EGA26190.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249414|gb|EGA33330.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252251|gb|EGA36102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256658|gb|EGA40388.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261308|gb|EGA44895.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265512|gb|EGA49008.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271700|gb|EGA55118.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326621786|gb|EGE28131.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626453|gb|EGE32796.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987042|gb|AEF06025.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 273 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270 >gi|218547501|ref|YP_002381292.1| dimethyladenosine transferase [Escherichia fergusonii ATCC 35469] gi|226732582|sp|B7LVU5|RSMA_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218355042|emb|CAQ87648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia fergusonii ATCC 35469] Length = 273 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|283783840|ref|YP_003363705.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Citrobacter rodentium ICC168] gi|282947294|emb|CBG86839.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Citrobacter rodentium ICC168] Length = 273 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + R + VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERLDR-LTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L + G++ +RAEN+S+ +CR+ N L +N + Sbjct: 228 SLGNLFSVEVLTELGVDPAMRAENISVAQYCRMANYLAENAPL 270 >gi|257868862|ref|ZP_05648515.1| dimethyladenosine transferase [Enterococcus gallinarum EG2] gi|257803026|gb|EEV31848.1| dimethyladenosine transferase [Enterococcus gallinarum EG2] Length = 300 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/289 (30%), Positives = 148/289 (51%), Gaps = 20/289 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL+ + KK +GQNFL + NIL+KI ++ D VIE+G G G LT+ L Sbjct: 10 PSRTKEILAKHGFTFKKSLGQNFLTEPNILRKIVATAAIDDQTNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 AR+V+ E D + P+L+D + + N +++I D L+ D + F PI+++ Sbjct: 70 KH-ARQVLAFEIDDRLIPVLQDTLAPYSN-IQVIHQDVLQADLSTMIREAFTDERPIKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ + + + ++ QKEV +RI+A + YG LS+ + Sbjct: 128 ANLPYYITTPIMMHFLESQAP---IQEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A + F + VF P P V S ++ P + K+T+ AF RRKTL + Sbjct: 185 EAELAFIVPKTVFVPQPNVDSAILKLTRRATPAVEVTDEKEFFKLTKAAFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L+ G++ L + I+ R E LS+ +F R++N + ++ Sbjct: 245 LQNSYGKDEKTKEWLKASLAASEIDPTRRGETLSLAEFARLSNEMLAHK 293 >gi|218693523|ref|YP_002401190.1| dimethyladenosine transferase [Escherichia coli 55989] gi|254807867|sp|B7L4H4|RSMA_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218350255|emb|CAU95938.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli 55989] Length = 273 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|331265645|ref|YP_004325275.1| dimethyladenosine transferase [Streptococcus oralis Uo5] gi|326682317|emb|CBY99934.1| dimethyladenosine transferase [Streptococcus oralis Uo5] Length = 290 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 152/292 (52%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPG 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + +P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F +++ L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDALK 286 >gi|271502083|ref|YP_003335109.1| dimethyladenosine transferase [Dickeya dadantii Ech586] gi|270345638|gb|ACZ78403.1| dimethyladenosine transferase [Dickeya dadantii Ech586] Length = 272 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 139/280 (49%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPQPGQAMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + V+E D+ L ++ ++L IIQ DA+ VDF P+R+ Sbjct: 53 IPVGER-INRFTVVELDRDLAARL-EVHPTLKDKLTIIQQDAMTVDFAALSQQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IHDMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH +P P L +IT EAF +RRKTLR Sbjct: 168 CQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTASPYPAVDTRILSRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L ++ N RAEN++I +CR+ LT + Sbjct: 228 SLGNLFTPEQLTALEVDPNTRAENVTIAQYCRLAEWLTAH 267 >gi|323950949|gb|EGB46826.1| dimethyladenosine transferase [Escherichia coli H252] Length = 273 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPIGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|157156598|ref|YP_001461223.1| dimethyladenosine transferase [Escherichia coli E24377A] gi|293403126|ref|ZP_06647223.1| dimethyladenosine transferase [Escherichia coli FVEC1412] gi|300900925|ref|ZP_07119060.1| dimethyladenosine transferase [Escherichia coli MS 198-1] gi|301019759|ref|ZP_07183905.1| dimethyladenosine transferase [Escherichia coli MS 69-1] gi|331681437|ref|ZP_08382074.1| dimethyladenosine transferase [Escherichia coli H299] gi|166987692|sp|A7ZHE4|RSMA_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157078628|gb|ABV18336.1| dimethyladenosine transferase [Escherichia coli E24377A] gi|291430041|gb|EFF03055.1| dimethyladenosine transferase [Escherichia coli FVEC1412] gi|300355588|gb|EFJ71458.1| dimethyladenosine transferase [Escherichia coli MS 198-1] gi|300399096|gb|EFJ82634.1| dimethyladenosine transferase [Escherichia coli MS 69-1] gi|331081658|gb|EGI52819.1| dimethyladenosine transferase [Escherichia coli H299] Length = 273 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|192361991|ref|YP_001981369.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107] gi|190688156|gb|ACE85834.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107] Length = 287 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/273 (34%), Positives = 147/273 (53%), Gaps = 8/273 (2%) Query: 9 SLKTILSHYK-IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++K +L+ +K GQNFL+D I++ I + V+EIG G G +T+ LL Sbjct: 6 AMKKLLNSENTHKARKRFGQNFLVDHGIIRDIVRAVHPQKTDVVVEIGPGKGAITE-LLA 64 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + VIE D+ P LK +HPN ++ Q DAL+ DF + P+RI+ NLPY Sbjct: 65 DACDNLSVIELDRDLVPWLKVKFEKHPN-FQLFQADALRFDFRQLIKPGQPLRIVGNLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T L+F+ + + + + QKEV +R+ A+ S YGRL ++ + + Sbjct: 124 NISTPLIFHLLGYANQ---VKDMHFMLQKEVVKRMAAEPGSGAYGRLGIMVQYFCAVENL 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245 F++ P F P PKV S ++ +PH L++L+ + AF +RRKTLR SLK L Sbjct: 181 FEVPPTSFDPPPKVDSAIVRLVPHQQLPYLANNLKTLETLVNVAFQQRRKTLRNSLKSLL 240 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L ++ NLR EN+S+ ++ +I+N+L D Sbjct: 241 SMAQLDSLPVDLNLRPENISLAEYVQISNLLGD 273 >gi|90020384|ref|YP_526211.1| dimethyladenosine transferase [Saccharophagus degradans 2-40] gi|119365059|sp|Q21MT0|RSMA_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89949984|gb|ABD79999.1| dimethyladenosine transferase [Saccharophagus degradans 2-40] Length = 268 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 136/262 (51%), Gaps = 7/262 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 +K GQNFL D I+ I S G ++EIG G G +T L+ + V+ Sbjct: 10 QGHRARKRFGQNFLEDQGIINAIVRSIGPKASDNLVEIGPGKGAITAQLIESCP-SMQVV 68 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL + + N I Q DALK DF + P+R++ NLPYNI T L+F+ Sbjct: 69 ELDRDLIPILLAQFAIY-NDFRIHQTDALKFDFGQLATPERPLRVVGNLPYNISTPLIFH 127 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + + QKEV R+ A +YGRLSV+T + + +F++ P F Sbjct: 128 LLS---FGELIADMHFMLQKEVVLRLAAGPGDKNYGRLSVMTQYVCQVENLFEVPPECFN 184 Query: 197 PSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S ++ P+ P + L K+ + AF +RRKTLR +LK L E L Sbjct: 185 PRPKVDSAIVRLTPYRTQPFVAAHPDKLAKLVKTAFAQRRKTLRNNLKNLDEELDLEALD 244 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I+ RAE+LS+E++ ++N L Sbjct: 245 IDLTRRAESLSLEEYVNLSNTL 266 >gi|262369199|ref|ZP_06062527.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Acinetobacter johnsonii SH046] gi|262315267|gb|EEY96306.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Acinetobacter johnsonii SH046] Length = 270 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 97/259 (37%), Positives = 136/259 (52%), Gaps = 7/259 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHHTRKRFGQNFLHDQRVIAKIVRSVAPRSGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L HP RL II+ DALK DF F P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPGRV-PHPERLTIIETDALKYDFTNLFEDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV +RITA NS YGRLSV+ + K T +F++ P F P Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITASPNSKEYGRLSVMIQYFCKPTFLFEVPPGSFNP 187 Query: 198 SPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKVTS V P+ PI ++L ++ F +RRKTLR SLK + E+ QAG+ Sbjct: 188 PPKVTSAVFRLEPYAVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEDGFEQAGV 247 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++ F + + Sbjct: 248 DPMARPETLTLAQFVALAD 266 >gi|168234845|ref|ZP_02659903.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734867|ref|YP_002113107.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226732623|sp|B4TWT6|RSMA_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194710369|gb|ACF89590.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291958|gb|EDY31308.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 273 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSTQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270 >gi|333011435|gb|EGK30849.1| dimethyladenosine transferase [Shigella flexneri K-272] gi|333021674|gb|EGK40923.1| dimethyladenosine transferase [Shigella flexneri K-227] Length = 273 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENTPL 270 >gi|191169146|ref|ZP_03030905.1| dimethyladenosine transferase [Escherichia coli B7A] gi|190900821|gb|EDV60611.1| dimethyladenosine transferase [Escherichia coli B7A] Length = 273 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAAHLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|218687929|ref|YP_002396141.1| dimethyladenosine transferase [Escherichia coli ED1a] gi|254807868|sp|B7MNR0|RSMA_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218425493|emb|CAR06275.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli ED1a] Length = 273 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|152968629|ref|YP_001333738.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893024|ref|YP_002917758.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044] gi|262044916|ref|ZP_06017958.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330009280|ref|ZP_08306496.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3] gi|166221672|sp|A6T4I7|RSMA_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150953478|gb|ABR75508.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545340|dbj|BAH61691.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238774027|dbj|BAH66524.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044] gi|238774059|dbj|BAH66555.1| dimethyladenosine transferase [Klebsiella pneumoniae] gi|259037643|gb|EEW38872.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534857|gb|EGF61399.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3] Length = 273 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L + GI+ +RAEN+S+ +C + N L+DN Sbjct: 228 SLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDN 267 >gi|332358479|gb|EGJ36304.1| dimethyladenosine transferase [Streptococcus sanguinis SK49] Length = 290 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAES-AVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADALKS 287 >gi|238917939|ref|YP_002931456.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750] gi|238873299|gb|ACR73009.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750] Length = 293 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 152/288 (52%), Gaps = 17/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N ++++ +L+ Y KK GQNFL+D N+++KI +G V+E+G G G Sbjct: 10 MHLGNPTNTI-AVLNRYGFDFKKKFGQNFLIDENVVEKIVREAGVTKDDFVVEVGPGIGT 68 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 +TQ+L AR+V+ +E D++ PIL + + + + + +I +D LK+D +K + Sbjct: 69 MTQILCE-NAREVVAVEIDKKLIPILTEDTLSYYDNVTVINEDILKLDIKKLADEKNEGR 127 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 128 PIKVVANLPYYITTPIIMGLFESHVP---LDSITIMVQKEVADRMQCGPGTKDYGALSLA 184 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESL-KKITQEAFGKRRK 235 + K ++ ++ F P P V S VI P+ E L KI + +F +RRK Sbjct: 185 VQFYAKPKVVLNVPASCFMPRPNVDSAVIRLERFKTPPVDVKNEHLMFKIIRASFNQRRK 244 Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 T+ S+ G N L G+ +R E L++E F +++N+L Sbjct: 245 TMLNSVGNSGIGITKEALTNALETMGLPLTIRGEALTLEQFAQLSNLL 292 >gi|148543450|ref|YP_001270820.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016] gi|184152859|ref|YP_001841200.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112] gi|227363600|ref|ZP_03847717.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3] gi|325681794|ref|ZP_08161313.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A] gi|166987695|sp|A5VI09|RSMA_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732591|sp|B2G5I8|RSMA_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|148530484|gb|ABQ82483.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016] gi|183224203|dbj|BAG24720.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112] gi|227071396|gb|EEI09702.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3] gi|324978885|gb|EGC15833.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A] Length = 297 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 27/299 (9%) Query: 3 MNNKS-----HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I+ Y I KK GQNFL DLN+LK I E++ VIEIG G Sbjct: 1 MSNSPEIGSRTRTRAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113 G LT+ L A +V+ +E DQ P+LK++ S + + +++I D L+ + + Sbjct: 61 IGALTEQLA-QAAGEVLALEIDQDLIPVLKEVLSPYDD-VKVINQDVLQANLPELIKKEF 118 Query: 114 -NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 + S PI+++ANLPY I + +L N +++ P W ++ ++ QKEV +R+TA+ + YG Sbjct: 119 KDPSRPIKVVANLPYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYG 175 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEA 229 L++ ++ +A + FD+S VF P+P V S ++ P NP+P + L + Sbjct: 176 ALTLAIEYQMQAKIAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGC 235 Query: 230 FGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F RRK+L +L+ + G++ +L+Q I +R E L++E F + N L Sbjct: 236 FAHRRKSLWNNLQSVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANALHQQ 294 >gi|322375823|ref|ZP_08050334.1| dimethyladenosine transferase [Streptococcus sp. C300] gi|321279091|gb|EFX56133.1| dimethyladenosine transferase [Streptococcus sp. C300] Length = 290 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F + + L Sbjct: 235 KTLWNNLTGYFGKTDEVKEKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286 >gi|289167168|ref|YP_003445435.1| dimethyladenosine transferase [Streptococcus mitis B6] gi|288906733|emb|CBJ21567.1| dimethyladenosine transferase [Streptococcus mitis B6] Length = 290 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286 >gi|54307616|ref|YP_128636.1| dimethyladenosine transferase [Photobacterium profundum SS9] gi|46912039|emb|CAG18834.1| putative dimethyladenosine transferase [Photobacterium profundum SS9] Length = 286 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 138/270 (51%), Gaps = 7/270 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G LT+ + L K V Sbjct: 22 HLGHRARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSV 80 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 81 IELDRDLAKRLRHH-PDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV R+ A YGRL+V+ + ++ T + ++ P F Sbjct: 140 HLFTFHEH---VEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESF 196 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L Sbjct: 197 TPAPKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDL 256 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 G+ LR EN++++ F ++ N L N A Sbjct: 257 GVNPGLRPENITLQQFVKMANWLDANHQNA 286 >gi|260912726|ref|ZP_05919212.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325] gi|260633104|gb|EEX51269.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325] Length = 288 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 141/273 (51%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N+++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDDNVIQGIVSAIYPQKDQFLVEIGPGLGALTEPVGDL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +++ +I+ DA++ DF K + +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLH-HKITVIETDAMQFDFGQLYQEAKLAEKNQKMRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHDC---IQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ +PH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPTAFKPAPKVDSAVVRLVPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFT 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + GI+ RAENLSI D+ R+ N L DN Sbjct: 240 AEQLTELGIDLTARAENLSIADYARLANWLADN 272 >gi|167622855|ref|YP_001673149.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4] gi|189028817|sp|B0TV52|RSMA_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|167352877|gb|ABZ75490.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4] Length = 267 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 145/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + G K+IV+E D+ L+ ++LEI Q DALK DF + +++ Sbjct: 53 EPVA-SGIDKLIVVELDKDLVERLQ-THPVLKDKLEIHQGDALKFDFNQLVREDKQMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ E++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFEFAQH---IENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P PKV S V+ +P+ N P PC ++ L+ +T AF RRKTLR + Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKNKPWPCKDVDLLRNLTTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK+L + + GI+ LR E + ++ + + N + D + Sbjct: 228 LKQLLSDEDFAELGIDATLRPEQIRVDQYVAMANHVFDKK 267 >gi|270292088|ref|ZP_06198303.1| dimethyladenosine transferase [Streptococcus sp. M143] gi|270279616|gb|EFA25458.1| dimethyladenosine transferase [Streptococcus sp. M143] Length = 290 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + +P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDEQFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F + + L Sbjct: 235 KTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286 >gi|238922667|ref|YP_002936180.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656] gi|238874339|gb|ACR74046.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656] Length = 288 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 95/287 (33%), Positives = 153/287 (53%), Gaps = 19/287 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N +++ +L Y +K GQNFL+D IL++I +S+G ++EIG G G +T Sbjct: 4 LGNPKNTI-EVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L AR+VI +E D PILKD S++ N +++I DD LKVD +N PI Sbjct: 63 QYLCES-ARQVIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ A YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQAAPGKKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + + ++ ++ P F P PKV S+VI + P+ + + KI + +F +RRKTL Sbjct: 178 YYSHPEIVVNVPPSCFMPQPKVGSSVISLKRYEKPVVDVEDEKLMFKIIRASFNQRRKTL 237 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L GG + + G+ N+R E LS+ F +++NI+ Sbjct: 238 ANGLNNFGGMGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284 >gi|16128045|ref|NP_414593.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|74310670|ref|YP_309089.1| dimethyladenosine transferase [Shigella sonnei Ss046] gi|82542657|ref|YP_406604.1| dimethyladenosine transferase [Shigella boydii Sb227] gi|89106935|ref|AP_000715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K-12 substr. W3110] gi|110804117|ref|YP_687637.1| dimethyladenosine transferase [Shigella flexneri 5 str. 8401] gi|157159522|ref|YP_001456840.1| dimethyladenosine transferase [Escherichia coli HS] gi|170021591|ref|YP_001726545.1| dimethyladenosine transferase [Escherichia coli ATCC 8739] gi|170079714|ref|YP_001729034.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683255|ref|YP_001742172.1| dimethyladenosine transferase [Escherichia coli SMS-3-5] gi|188492783|ref|ZP_03000053.1| dimethyladenosine transferase [Escherichia coli 53638] gi|193066225|ref|ZP_03047278.1| dimethyladenosine transferase [Escherichia coli E22] gi|193070981|ref|ZP_03051910.1| dimethyladenosine transferase [Escherichia coli E110019] gi|194429859|ref|ZP_03062371.1| dimethyladenosine transferase [Escherichia coli B171] gi|194434556|ref|ZP_03066814.1| dimethyladenosine transferase [Shigella dysenteriae 1012] gi|194439700|ref|ZP_03071770.1| dimethyladenosine transferase [Escherichia coli 101-1] gi|218552636|ref|YP_002385549.1| dimethyladenosine transferase [Escherichia coli IAI1] gi|218698473|ref|YP_002406102.1| dimethyladenosine transferase [Escherichia coli IAI39] gi|238899456|ref|YP_002925252.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli BW2952] gi|253774917|ref|YP_003037748.1| dimethyladenosine transferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037468|ref|ZP_04871545.1| methyltransferase [Escherichia sp. 1_1_43] gi|254160176|ref|YP_003043284.1| dimethyladenosine transferase [Escherichia coli B str. REL606] gi|256020109|ref|ZP_05433974.1| dimethyladenosine transferase [Shigella sp. D9] gi|256025368|ref|ZP_05439233.1| dimethyladenosine transferase [Escherichia sp. 4_1_40B] gi|260842288|ref|YP_003220066.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O103:H2 str. 12009] gi|260853265|ref|YP_003227156.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O26:H11 str. 11368] gi|260866205|ref|YP_003232607.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O111:H- str. 11128] gi|293408146|ref|ZP_06651986.1| dimethyladenosine transferase [Escherichia coli B354] gi|293417929|ref|ZP_06660551.1| dimethyladenosine transferase [Escherichia coli B185] gi|293476715|ref|ZP_06665123.1| dimethyladenosine transferase [Escherichia coli B088] gi|300816088|ref|ZP_07096311.1| dimethyladenosine transferase [Escherichia coli MS 107-1] gi|300821944|ref|ZP_07102088.1| dimethyladenosine transferase [Escherichia coli MS 119-7] gi|300905455|ref|ZP_07123221.1| dimethyladenosine transferase [Escherichia coli MS 84-1] gi|300928650|ref|ZP_07144169.1| dimethyladenosine transferase [Escherichia coli MS 187-1] gi|300939468|ref|ZP_07154130.1| dimethyladenosine transferase [Escherichia coli MS 21-1] gi|300948655|ref|ZP_07162739.1| dimethyladenosine transferase [Escherichia coli MS 116-1] gi|300956981|ref|ZP_07169233.1| dimethyladenosine transferase [Escherichia coli MS 175-1] gi|301305057|ref|ZP_07211158.1| dimethyladenosine transferase [Escherichia coli MS 124-1] gi|301648382|ref|ZP_07248118.1| dimethyladenosine transferase [Escherichia coli MS 146-1] gi|307136654|ref|ZP_07496010.1| dimethyladenosine transferase [Escherichia coli H736] gi|307311495|ref|ZP_07591137.1| dimethyladenosine transferase [Escherichia coli W] gi|309796040|ref|ZP_07690452.1| dimethyladenosine transferase [Escherichia coli MS 145-7] gi|331640503|ref|ZP_08341651.1| dimethyladenosine transferase [Escherichia coli H736] gi|331661422|ref|ZP_08362346.1| dimethyladenosine transferase [Escherichia coli TA143] gi|331666288|ref|ZP_08367169.1| dimethyladenosine transferase [Escherichia coli TA271] gi|331671571|ref|ZP_08372369.1| dimethyladenosine transferase [Escherichia coli TA280] gi|331680624|ref|ZP_08381283.1| dimethyladenosine transferase [Escherichia coli H591] gi|332281262|ref|ZP_08393675.1| dimethyladenosine transferase [Shigella sp. D9] gi|125699|sp|P06992|RSMA_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=High level kasugamycin resistance protein ksgA; AltName: Full=Kasugamycin dimethyltransferase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365842|sp|Q326I2|RSMA_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365844|sp|Q3Z5V8|RSMA_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123147300|sp|Q0T8E4|RSMA_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166987693|sp|A7ZW03|RSMA_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028807|sp|B1IRC5|RSMA_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732575|sp|B7NHF7|RSMA_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732576|sp|B7M0E8|RSMA_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732577|sp|B1XC52|RSMA_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732580|sp|B1LFY7|RSMA_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|259494249|sp|C4ZPX7|RSMA_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|40917|emb|CAA28417.1| unnamed protein product [Escherichia coli] gi|146571|gb|AAA24049.1| methyltransferase (ksgA) [Escherichia coli] gi|1786236|gb|AAC73162.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|73854147|gb|AAZ86854.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Shigella sonnei Ss046] gi|81244068|gb|ABB64776.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Shigella boydii Sb227] gi|85674303|dbj|BAE76038.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K12 substr. W3110] gi|110613665|gb|ABF02332.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Shigella flexneri 5 str. 8401] gi|157065202|gb|ABV04457.1| dimethyladenosine transferase [Escherichia coli HS] gi|169756519|gb|ACA79218.1| dimethyladenosine transferase [Escherichia coli ATCC 8739] gi|169887549|gb|ACB01256.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170520973|gb|ACB19151.1| dimethyladenosine transferase [Escherichia coli SMS-3-5] gi|188487982|gb|EDU63085.1| dimethyladenosine transferase [Escherichia coli 53638] gi|192926150|gb|EDV80791.1| dimethyladenosine transferase [Escherichia coli E22] gi|192955711|gb|EDV86185.1| dimethyladenosine transferase [Escherichia coli E110019] gi|194412078|gb|EDX28388.1| dimethyladenosine transferase [Escherichia coli B171] gi|194417209|gb|EDX33320.1| dimethyladenosine transferase [Shigella dysenteriae 1012] gi|194421385|gb|EDX37402.1| dimethyladenosine transferase [Escherichia coli 101-1] gi|218359404|emb|CAQ96943.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli IAI1] gi|218368459|emb|CAR16195.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli IAI39] gi|226840574|gb|EEH72576.1| methyltransferase [Escherichia sp. 1_1_43] gi|238863510|gb|ACR65508.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli BW2952] gi|242375890|emb|CAQ30571.1| 16S rRNA m[6][2]A1518,m[6][2]A1519 dimethyltransferase [Escherichia coli BL21(DE3)] gi|253325961|gb|ACT30563.1| dimethyladenosine transferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972077|gb|ACT37748.1| dimethyladenosine transferase [Escherichia coli B str. REL606] gi|253976286|gb|ACT41956.1| dimethyladenosine transferase [Escherichia coli BL21(DE3)] gi|257751914|dbj|BAI23416.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O26:H11 str. 11368] gi|257757435|dbj|BAI28932.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O103:H2 str. 12009] gi|257762561|dbj|BAI34056.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O111:H- str. 11128] gi|260450740|gb|ACX41162.1| dimethyladenosine transferase [Escherichia coli DH1] gi|284919834|emb|CBG32889.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Escherichia coli 042] gi|291321168|gb|EFE60610.1| dimethyladenosine transferase [Escherichia coli B088] gi|291430647|gb|EFF03645.1| dimethyladenosine transferase [Escherichia coli B185] gi|291472397|gb|EFF14879.1| dimethyladenosine transferase [Escherichia coli B354] gi|300316271|gb|EFJ66055.1| dimethyladenosine transferase [Escherichia coli MS 175-1] gi|300402671|gb|EFJ86209.1| dimethyladenosine transferase [Escherichia coli MS 84-1] gi|300451881|gb|EFK15501.1| dimethyladenosine transferase [Escherichia coli MS 116-1] gi|300455689|gb|EFK19182.1| dimethyladenosine transferase [Escherichia coli MS 21-1] gi|300463319|gb|EFK26812.1| dimethyladenosine transferase [Escherichia coli MS 187-1] gi|300525544|gb|EFK46613.1| dimethyladenosine transferase [Escherichia coli MS 119-7] gi|300531295|gb|EFK52357.1| dimethyladenosine transferase [Escherichia coli MS 107-1] gi|300839664|gb|EFK67424.1| dimethyladenosine transferase [Escherichia coli MS 124-1] gi|301073517|gb|EFK88323.1| dimethyladenosine transferase [Escherichia coli MS 146-1] gi|306908474|gb|EFN38972.1| dimethyladenosine transferase [Escherichia coli W] gi|308120282|gb|EFO57544.1| dimethyladenosine transferase [Escherichia coli MS 145-7] gi|309700264|emb|CBI99552.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase) [Escherichia coli ETEC H10407] gi|315059277|gb|ADT73604.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli W] gi|315134747|dbj|BAJ41906.1| dimethyladenosine transferase [Escherichia coli DH1] gi|315255673|gb|EFU35641.1| dimethyladenosine transferase [Escherichia coli MS 85-1] gi|315616172|gb|EFU96791.1| dimethyladenosine transferase [Escherichia coli 3431] gi|320172861|gb|EFW48093.1| Dimethyladenosine transferase [Shigella dysenteriae CDC 74-1112] gi|320182964|gb|EFW57832.1| Dimethyladenosine transferase [Shigella flexneri CDC 796-83] gi|320200429|gb|EFW75015.1| Dimethyladenosine transferase [Escherichia coli EC4100B] gi|323157886|gb|EFZ43989.1| dimethyladenosine transferase [Escherichia coli EPECa14] gi|323160077|gb|EFZ46039.1| dimethyladenosine transferase [Escherichia coli E128010] gi|323166103|gb|EFZ51882.1| dimethyladenosine transferase [Shigella sonnei 53G] gi|323171211|gb|EFZ56859.1| dimethyladenosine transferase [Escherichia coli LT-68] gi|323176360|gb|EFZ61952.1| dimethyladenosine transferase [Escherichia coli 1180] gi|323380166|gb|ADX52434.1| dimethyladenosine transferase [Escherichia coli KO11] gi|323935104|gb|EGB31471.1| dimethyladenosine transferase [Escherichia coli E1520] gi|323939727|gb|EGB35929.1| dimethyladenosine transferase [Escherichia coli E482] gi|323960000|gb|EGB55646.1| dimethyladenosine transferase [Escherichia coli H489] gi|323970725|gb|EGB65979.1| dimethyladenosine transferase [Escherichia coli TA007] gi|323975781|gb|EGB70877.1| dimethyladenosine transferase [Escherichia coli TW10509] gi|324017680|gb|EGB86899.1| dimethyladenosine transferase [Escherichia coli MS 117-3] gi|324118403|gb|EGC12297.1| dimethyladenosine transferase [Escherichia coli E1167] gi|331040249|gb|EGI12456.1| dimethyladenosine transferase [Escherichia coli H736] gi|331061337|gb|EGI33300.1| dimethyladenosine transferase [Escherichia coli TA143] gi|331066499|gb|EGI38376.1| dimethyladenosine transferase [Escherichia coli TA271] gi|331071416|gb|EGI42773.1| dimethyladenosine transferase [Escherichia coli TA280] gi|331072087|gb|EGI43423.1| dimethyladenosine transferase [Escherichia coli H591] gi|332095340|gb|EGJ00363.1| dimethyladenosine transferase [Shigella boydii 5216-82] gi|332097801|gb|EGJ02774.1| dimethyladenosine transferase [Shigella dysenteriae 155-74] gi|332098860|gb|EGJ03811.1| dimethyladenosine transferase [Shigella boydii 3594-74] gi|332103614|gb|EGJ06960.1| dimethyladenosine transferase [Shigella sp. D9] gi|332341383|gb|AEE54717.1| dimethyladenosine transferase KsgA [Escherichia coli UMNK88] gi|332762612|gb|EGJ92877.1| dimethyladenosine transferase [Shigella flexneri 4343-70] gi|333009061|gb|EGK28517.1| dimethyladenosine transferase [Shigella flexneri K-218] gi|224747|prf||1112172A methyltransferase Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|323964849|gb|EGB60316.1| dimethyladenosine transferase [Escherichia coli M863] gi|327255031|gb|EGE66634.1| dimethyladenosine transferase [Escherichia coli STEC_7v] Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELATKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|24111497|ref|NP_706007.1| dimethyladenosine transferase [Shigella flexneri 2a str. 301] gi|30061618|ref|NP_835789.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T] gi|62900584|sp|Q83MG8|RSMA_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24050250|gb|AAN41714.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Shigella flexneri 2a str. 301] gi|30039860|gb|AAP15594.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Shigella flexneri 2a str. 2457T] gi|281599412|gb|ADA72396.1| Dimethyladenosine transferase [Shigella flexneri 2002017] gi|313646570|gb|EFS11031.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T] gi|332762369|gb|EGJ92636.1| dimethyladenosine transferase [Shigella flexneri 2747-71] gi|332764894|gb|EGJ95122.1| dimethyladenosine transferase [Shigella flexneri K-671] gi|332768840|gb|EGJ99019.1| dimethyladenosine transferase [Shigella flexneri 2930-71] gi|333022380|gb|EGK41618.1| dimethyladenosine transferase [Shigella flexneri K-304] Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|320539608|ref|ZP_08039272.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson] gi|320030220|gb|EFW12235.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson] Length = 272 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G +IEIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPQPGEAIIEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + R + VIE D+ L + SS ++L I Q DA+ V+F + P+R+ Sbjct: 53 EPVGARMDR-MTVIELDRDLAAWLANHSS-LKDKLTIYQQDAMTVNFAEMAKQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ + + + QKEV R+ A +S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---IYTQEIRDMHFMLQKEVVNRLVAGPDSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P+PKV S V+ +PH + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPTSFTPAPKVDSAVVRLVPHSVMPNPVSDVHMLSRITTQAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L + GI +LRAEN+S+ +C++ N L+DN Sbjct: 228 SLGDLFTPVQLMELGINASLRAENISVAQYCKLANWLSDN 267 >gi|327468444|gb|EGF13929.1| dimethyladenosine transferase [Streptococcus sanguinis SK330] Length = 290 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKSYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKDKLTAALERAELSPSVRGEALSLEEFARLADALKS 287 >gi|212636813|ref|YP_002313338.1| dimethyladenosine transferase [Shewanella piezotolerans WP3] gi|226732624|sp|B8CSX5|RSMA_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|212558297|gb|ACJ30751.1| Dimethyladenosine transferase [Shewanella piezotolerans WP3] Length = 270 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDENVINRIVGAISPDNEHVMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + G K+ V+E D+ LK ++LEI Q DAL DF++ +++ Sbjct: 53 EPVA-SGIDKLTVVELDKDLVERLK-THPTLKDKLEIHQGDALNFDFKQLVREDMQMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + + E++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAQYIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P PKV S V+ +P+ P PC +E L+ +T AF RRKTLR + Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKTKPFPCKDVEVLRHLTTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + ++ Q I++ LR E +S++ + + N+ D Q Sbjct: 228 LKHMLSDDEFAQLEIDSTLRPEQISVQQYVAMANLFIDKQ 267 >gi|161504790|ref|YP_001571902.1| dimethyladenosine transferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189028814|sp|A9MQG2|RSMA_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160866137|gb|ABX22760.1| hypothetical protein SARI_02914 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + + P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLGVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270 >gi|332365863|gb|EGJ43620.1| dimethyladenosine transferase [Streptococcus sanguinis SK355] Length = 290 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSYFGKSEETKGKLSAALERADLSPSVRGEALSLEEFARLADALKS 287 >gi|323350567|ref|ZP_08086229.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66] gi|322123249|gb|EFX94934.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66] Length = 290 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287 >gi|209917243|ref|YP_002291327.1| dimethyladenosine transferase [Escherichia coli SE11] gi|226732579|sp|B6HZ32|RSMA_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209910502|dbj|BAG75576.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli SE11] Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 141/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|291562910|emb|CBL41726.1| dimethyladenosine transferase [butyrate-producing bacterium SS3/4] Length = 288 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 153/292 (52%), Gaps = 19/292 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 + N +++ I+ Y+ + +K GQNFL+D ++L+KI ++G V+EIG G G + Sbjct: 3 NLGNPKNTI-EIIQKYEFMFQKKFGQNFLIDTHVLEKIISAAGITKNDCVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L A V+ +E D+ PILK+ + + N + +I +D L+VD + +N P Sbjct: 62 TQYLAE-NAGHVVAVEIDRNLIPILKETLADYDN-VTVINEDILRVDIKALAEEYNGGKP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +++T++ QKEV +R+ S YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMKEGPGSKDYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI H P+ +L KI + +F +RRKT Sbjct: 177 QYYAEPEIVANVPPNCFIPRPNVGSAVIRLTRHKEMPVEVKDPALMFKIIRASFNQRRKT 236 Query: 237 LRQSLKRL----GGENLLHQA----GIETNLRAENLSIEDFCRITNILTDNQ 280 L+ L + + A G+ +R E LS+ F ++++IL + + Sbjct: 237 LQNGLGNAPELPYTKEQIAAAIAEMGLTPTIRGEALSLAQFAQLSDILGEMK 288 >gi|261823067|ref|YP_003261173.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163] gi|261607080|gb|ACX89566.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163] Length = 272 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + R VIE D+ L+ ++L IIQ DA+ +DF P+R+ Sbjct: 53 APIGDRMDR-FTVIELDRDLAARLEKH-PTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ T+ + + QKEV R+ A NS +GRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKTLR Sbjct: 168 CQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAVIPYPVSDIRVLSRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L + GI RAEN+++E +CR+ N L+++ Sbjct: 228 SLGNLFTPETLTELGINVTSRAENVTVEQYCRLANWLSEH 267 >gi|218703312|ref|YP_002410831.1| dimethyladenosine transferase [Escherichia coli UMN026] gi|298378654|ref|ZP_06988538.1| dimethyladenosine transferase [Escherichia coli FVEC1302] gi|226732578|sp|B7N7S6|RSMA_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218430409|emb|CAR11276.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli UMN026] gi|298280988|gb|EFI22489.1| dimethyladenosine transferase [Escherichia coli FVEC1302] Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 141/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|331661093|ref|ZP_08362025.1| dimethyladenosine transferase [Escherichia coli TA206] gi|315298429|gb|EFU57684.1| dimethyladenosine transferase [Escherichia coli MS 16-3] gi|331052135|gb|EGI24174.1| dimethyladenosine transferase [Escherichia coli TA206] Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|90411944|ref|ZP_01219952.1| dimethyladenosine transferase [Photobacterium profundum 3TCK] gi|90327202|gb|EAS43574.1| dimethyladenosine transferase [Photobacterium profundum 3TCK] Length = 271 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 90/270 (33%), Positives = 138/270 (51%), Gaps = 7/270 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I S L G ++EIG G G +T+ + L K V Sbjct: 7 HLGHRARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGRL-VDKFSV 65 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 66 IELDRDLAKRLRHH-PDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV R+ A YGRL+V+ + ++ T + ++ P F Sbjct: 125 HLFTFHEH---VEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESF 181 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L L Sbjct: 182 TPAPKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEHL 241 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 G+ LR EN++++ F ++ N L N A Sbjct: 242 GVNPGLRPENITLQQFVKMANWLDANHQNA 271 >gi|307710852|ref|ZP_07647279.1| dimethyladenosine transferase [Streptococcus mitis SK321] gi|307617297|gb|EFN96470.1| dimethyladenosine transferase [Streptococcus mitis SK321] Length = 290 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLIKALDQAGLSPSVRGEALSLEEFASLADALK 286 >gi|26245977|ref|NP_752016.1| dimethyladenosine transferase [Escherichia coli CFT073] gi|91209113|ref|YP_539099.1| dimethyladenosine transferase [Escherichia coli UTI89] gi|110640266|ref|YP_667994.1| dimethyladenosine transferase [Escherichia coli 536] gi|117622341|ref|YP_851254.1| dimethyladenosine transferase [Escherichia coli APEC O1] gi|191174105|ref|ZP_03035619.1| dimethyladenosine transferase [Escherichia coli F11] gi|215485215|ref|YP_002327646.1| dimethyladenosine transferase [Escherichia coli O127:H6 str. E2348/69] gi|218556992|ref|YP_002389905.1| dimethyladenosine transferase [Escherichia coli S88] gi|227885048|ref|ZP_04002853.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972] gi|237704197|ref|ZP_04534678.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA] gi|300981027|ref|ZP_07175304.1| dimethyladenosine transferase [Escherichia coli MS 45-1] gi|300984194|ref|ZP_07176922.1| dimethyladenosine transferase [Escherichia coli MS 200-1] gi|301048437|ref|ZP_07195464.1| dimethyladenosine transferase [Escherichia coli MS 185-1] gi|306815349|ref|ZP_07449498.1| dimethyladenosine transferase [Escherichia coli NC101] gi|312966174|ref|ZP_07780400.1| dimethyladenosine transferase [Escherichia coli 2362-75] gi|331645161|ref|ZP_08346272.1| dimethyladenosine transferase [Escherichia coli M605] gi|33516938|sp|Q8FL96|RSMA_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600864|sp|Q0TLT6|RSMA_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365024|sp|Q1RGE6|RSMA_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221662|sp|A1A7A0|RSMA_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732573|sp|B7MAH6|RSMA_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807866|sp|B7UI99|RSMA_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|26106374|gb|AAN78560.1|AE016755_60 Dimethyladenosine transferase [Escherichia coli CFT073] gi|91070687|gb|ABE05568.1| dimethyladenosine transferase [Escherichia coli UTI89] gi|110341858|gb|ABG68095.1| dimethyladenosine transferase [Escherichia coli 536] gi|115511465|gb|ABI99539.1| dimethyladenosine transferase [Escherichia coli APEC O1] gi|190905599|gb|EDV65224.1| dimethyladenosine transferase [Escherichia coli F11] gi|215263287|emb|CAS07602.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218363761|emb|CAR01422.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli S88] gi|226902109|gb|EEH88368.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA] gi|227837877|gb|EEJ48343.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972] gi|281177268|dbj|BAI53598.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli SE15] gi|294493966|gb|ADE92722.1| dimethyladenosine transferase [Escherichia coli IHE3034] gi|300299730|gb|EFJ56115.1| dimethyladenosine transferase [Escherichia coli MS 185-1] gi|300306724|gb|EFJ61244.1| dimethyladenosine transferase [Escherichia coli MS 200-1] gi|300409063|gb|EFJ92601.1| dimethyladenosine transferase [Escherichia coli MS 45-1] gi|305851011|gb|EFM51466.1| dimethyladenosine transferase [Escherichia coli NC101] gi|307551898|gb|ADN44673.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli ABU 83972] gi|307629627|gb|ADN73931.1| dimethyladenosine transferase [Escherichia coli UM146] gi|312289417|gb|EFR17311.1| dimethyladenosine transferase [Escherichia coli 2362-75] gi|315285119|gb|EFU44564.1| dimethyladenosine transferase [Escherichia coli MS 110-3] gi|315293372|gb|EFU52724.1| dimethyladenosine transferase [Escherichia coli MS 153-1] gi|320197502|gb|EFW72116.1| Dimethyladenosine transferase [Escherichia coli WV_060327] gi|323955249|gb|EGB51022.1| dimethyladenosine transferase [Escherichia coli H263] gi|324008399|gb|EGB77618.1| dimethyladenosine transferase [Escherichia coli MS 57-2] gi|324012309|gb|EGB81528.1| dimethyladenosine transferase [Escherichia coli MS 60-1] gi|330909903|gb|EGH38413.1| dimethyladenosine transferase [Escherichia coli AA86] gi|331045918|gb|EGI18037.1| dimethyladenosine transferase [Escherichia coli M605] Length = 273 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|319654955|ref|ZP_08009029.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2] gi|317393380|gb|EFV74144.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2] Length = 292 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 20/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + IL Y KK +GQNFL+D NIL++I + + + IEIG G G LT+ L Sbjct: 8 PARTRAILDKYGFSFKKSLGQNFLIDTNILRRIVDHADLSEESGAIEIGPGIGALTEQLA 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 ++KV+ E DQ+ PIL++ S +P+ + II +D LK D E+ F + I ++ Sbjct: 68 RR-SKKVLAFEIDQRLLPILEETLSPYPH-VSIINEDVLKADVKTAIEQEFEGINDIMVV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + + + QKEV +RI+A+ + YG LS+ + T Sbjct: 126 ANLPYYVTTPIIMKLLEDKLP---IRGIVCMLQKEVADRISARPGTKEYGSLSIAVQYYT 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A + VF P P V S VI P K+T+ +F +RRKTL + Sbjct: 183 EAETAMIVPKTVFVPQPNVDSAVIKLTKRKEPAVAVKSESFFFKVTKASFAQRRKTLLNN 242 Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L K+ + L QA +E R E LSIE+F R+++ L + Sbjct: 243 LTSQLPGGKQKKEHILSALEQANVEPGRRGETLSIEEFARLSDALLPH 290 >gi|163750059|ref|ZP_02157302.1| dimethyladenosine transferase [Shewanella benthica KT99] gi|161330116|gb|EDQ01098.1| dimethyladenosine transferase [Shewanella benthica KT99] Length = 272 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+N+ H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNRVH--------LGHTARKRFGQNFLTDHNVINRIVGAIAPDNDHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + K+ V+E D+ L+ ++LEI Q DAL DF + ++I Sbjct: 53 EPVAES-IDKLTVVELDRDLVARLQKH-PTLKHKLEIHQGDALNFDFSQLIEEGKELKIF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ +++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFQFAEH---IKNMHFMLQKEVVLRLSATPGTKAYGRLTVMAQYHC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P+PKV S V+ +P+ P PC ++ L+ +T AF RRKTLR + Sbjct: 168 QVMPVLEVPPESFTPAPKVDSAVVRLVPYKQKPWPCKDVDFLRHMTTTAFSMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + + I+++LR E +S+E + + N+L D + Sbjct: 228 LKHIISDEEFLSLNIDSSLRPEQISVEQYVAMANMLLDKK 267 >gi|82775456|ref|YP_401803.1| dimethyladenosine transferase [Shigella dysenteriae Sd197] gi|119365843|sp|Q32K43|RSMA_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|81239604|gb|ABB60314.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Shigella dysenteriae Sd197] Length = 273 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+ + Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLHV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKVYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|312970146|ref|ZP_07784328.1| dimethyladenosine transferase [Escherichia coli 1827-70] gi|310337644|gb|EFQ02755.1| dimethyladenosine transferase [Escherichia coli 1827-70] Length = 273 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKDQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|15799736|ref|NP_285748.1| dimethyladenosine transferase [Escherichia coli O157:H7 EDL933] gi|15829310|ref|NP_308083.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai] gi|168751689|ref|ZP_02776711.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4113] gi|168756882|ref|ZP_02781889.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4401] gi|168762818|ref|ZP_02787825.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4501] gi|168766746|ref|ZP_02791753.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4486] gi|168776974|ref|ZP_02801981.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4196] gi|168781755|ref|ZP_02806762.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4076] gi|168785109|ref|ZP_02810116.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869] gi|168801939|ref|ZP_02826946.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508] gi|195937727|ref|ZP_03083109.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4024] gi|208807925|ref|ZP_03250262.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4206] gi|208813755|ref|ZP_03255084.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4045] gi|208819017|ref|ZP_03259337.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4042] gi|209397383|ref|YP_002268661.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4115] gi|217326445|ref|ZP_03442529.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. TW14588] gi|254791190|ref|YP_003076027.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. TW14359] gi|261226811|ref|ZP_05941092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255214|ref|ZP_05947747.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291280877|ref|YP_003497695.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|27151579|sp|Q8XA14|RSMA_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732574|sp|B5YZ89|RSMA_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|12512746|gb|AAG54356.1|AE005182_5 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. EDL933] gi|13359512|dbj|BAB33479.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai] gi|187767719|gb|EDU31563.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4196] gi|188014303|gb|EDU52425.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4113] gi|189000721|gb|EDU69707.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4076] gi|189356082|gb|EDU74501.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4401] gi|189364097|gb|EDU82516.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4486] gi|189366989|gb|EDU85405.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4501] gi|189374734|gb|EDU93150.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869] gi|189375991|gb|EDU94407.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508] gi|208727726|gb|EDZ77327.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4206] gi|208735032|gb|EDZ83719.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4045] gi|208739140|gb|EDZ86822.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4042] gi|209158783|gb|ACI36216.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC4115] gi|209746894|gb|ACI71754.1| dimethyladenosine transferase [Escherichia coli] gi|209746896|gb|ACI71755.1| dimethyladenosine transferase [Escherichia coli] gi|209746898|gb|ACI71756.1| dimethyladenosine transferase [Escherichia coli] gi|209746900|gb|ACI71757.1| dimethyladenosine transferase [Escherichia coli] gi|209746902|gb|ACI71758.1| dimethyladenosine transferase [Escherichia coli] gi|217322666|gb|EEC31090.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. TW14588] gi|254590590|gb|ACT69951.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290760750|gb|ADD54711.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|320190426|gb|EFW65076.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. EC1212] gi|320642093|gb|EFX11444.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H7 str. G5101] gi|320647456|gb|EFX16251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H- str. 493-89] gi|320652790|gb|EFX21028.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H- str. H 2687] gi|320658179|gb|EFX25908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663488|gb|EFX30772.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O55:H7 str. USDA 5905] gi|320668800|gb|EFX35595.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Escherichia coli O157:H7 str. LSU-61] gi|326345229|gb|EGD68972.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1125] gi|326346918|gb|EGD70652.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1044] Length = 273 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 141/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L GI+ +RAEN+S+ +C++ N L +N Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267 >gi|315500017|ref|YP_004088820.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48] gi|315418029|gb|ADU14669.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48] Length = 277 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 112/284 (39%), Positives = 158/284 (55%), Gaps = 15/284 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGA 56 MT+ SL+ L + ++ KK GQ+FLLDLN+ +KI S DG VIE+G Sbjct: 1 MTL----PSLRESLEAHGLMAKKSFGQHFLLDLNVTRKIVRLGQEGGNSFDGQVVIEVGP 56 Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--- 113 GPG LT+ L A V+ +EKD +F +L ++ + +P R +++ DALKV+ Sbjct: 57 GPGGLTRAALESEATYVLAVEKDARFIDLLTELDTAYPGRFGVVEADALKVNEPALLAER 116 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + +++NLPYN+GT LL W++ P +SLTL+FQ EV R+ A YGR Sbjct: 117 GLPPQAHLVSNLPYNVGTPLLIKWLTGPWQP---KSLTLMFQLEVALRVVAPVGDDDYGR 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGK 232 L V++ + D+ F P PKV S V+ IP P + +L+ +T AFG+ Sbjct: 174 LGVISQVLCVCEKLMDLPARAFTPPPKVDSAVVRLIPRAERPDARVIHNLETLTAAAFGQ 233 Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RRK LR SLK LGGE LL + GI+ LRAEN+S DF R+ L Sbjct: 234 RRKMLRASLKALGGETLLAKVGIDPTLRAENISPADFLRLAEAL 277 >gi|304410422|ref|ZP_07392040.1| dimethyladenosine transferase [Shewanella baltica OS183] gi|307304514|ref|ZP_07584264.1| dimethyladenosine transferase [Shewanella baltica BA175] gi|304350906|gb|EFM15306.1| dimethyladenosine transferase [Shewanella baltica OS183] gi|306911916|gb|EFN42340.1| dimethyladenosine transferase [Shewanella baltica BA175] Length = 268 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 15/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D N++ +I + + ++EIG G G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + + V+E D+ L ++L I Q DAL+ DF + +++ Sbjct: 53 EPVAE-AVDNLTVVELDRDLVERLHHH-PVLKDKLTIHQGDALQFDFGQLSVPGKKMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ PH F P+PKV S V+ +P+ P C + L+ + AF RRKTLR + Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFSCKDVTVLRHLCTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK + ++ Q GI+++ R E +S++ + + N++ D + Sbjct: 228 LKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267 >gi|194446536|ref|YP_002039320.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226732621|sp|B4T6L6|RSMA_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194405199|gb|ACF65421.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 273 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 228 SLDNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270 >gi|330898897|gb|EGH30316.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 268 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L++I +EAF +RRKTLR +LK L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R + L++ Sbjct: 238 SGVDGSLRPEQLDLAVFVRRADTLSEK 264 >gi|154505613|ref|ZP_02042351.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149] gi|153794052|gb|EDN76472.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149] Length = 307 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 148/291 (50%), Gaps = 19/291 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y + +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 21 TLGNPQNTI-AVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTM 79 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KV +E D+ PIL+D + N +++I +D LKVD + N P Sbjct: 80 TQYLAC-AAGKVAAVEIDKALIPILEDTLDGYDN-VQVINEDVLKVDIAELAKQENEGKP 137 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 138 IKVVANLPYYITTPIIMGLFENHVP---MKSITVMVQKEVADRMQVGPGTKDYGALSLAV 194 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI + P + + +I + +F +RRKT Sbjct: 195 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLDRYEEPPVQVKDEKLMFRIIRASFNQRRKT 254 Query: 237 LRQSLKRL----GGENLLHQA----GIETNLRAENLSIEDFCRITNILTDN 279 L LK + + A G ++R E L++E+F + N L+D Sbjct: 255 LANGLKNSPELDFTKEQIEAAIGHLGRGASIRGEALTLEEFAELANYLSDQ 305 >gi|324992524|gb|EGC24445.1| dimethyladenosine transferase [Streptococcus sanguinis SK405] gi|324995947|gb|EGC27858.1| dimethyladenosine transferase [Streptococcus sanguinis SK678] gi|327460748|gb|EGF07083.1| dimethyladenosine transferase [Streptococcus sanguinis SK1] gi|327472469|gb|EGF17900.1| dimethyladenosine transferase [Streptococcus sanguinis SK408] gi|328944611|gb|EGG38772.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087] Length = 290 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAES-AVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287 >gi|269103551|ref|ZP_06156248.1| dimethyladenosine transferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163449|gb|EEZ41945.1| dimethyladenosine transferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 270 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 131/266 (49%), Gaps = 7/266 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + L V Sbjct: 6 HLGHRARKRFGQNFLTDPFIIDGIVSAINPRSGQNLVEIGPGLGAITEEVGKL-VDHFNV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ +L I + DA++ DF K + +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PDLGPKLTINEGDAMRFDFTKLIREDAKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + + QKEV R+ A YGRL+V+ + K + ++ P F Sbjct: 124 HLFTYHK---DVQDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYCKVMPVLEVPPESF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P+ P PC L+ L ++ +E F +RRKT+R K L + Sbjct: 181 VPAPKVDSAVVRLTPYETLPFPCTNLKWLDRVCREGFNQRRKTVRNCFKALMTAEQIEAL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G+ + R EN+S+E F + N L N Sbjct: 241 GVNPSDRPENISVEKFVALANWLDAN 266 >gi|332365155|gb|EGJ42918.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059] Length = 290 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P++++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPVKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKSYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + KI++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKISKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287 >gi|325495979|gb|EGC93838.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia fergusonii ECD227] Length = 273 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|324112546|gb|EGC06523.1| dimethyladenosine transferase [Escherichia fergusonii B253] Length = 273 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELATKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|306824464|ref|ZP_07457810.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433251|gb|EFM36221.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 290 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 151/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQYIQNFKNPE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + KI++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKISKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F +++ L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDALK 286 >gi|300923999|ref|ZP_07140000.1| dimethyladenosine transferase [Escherichia coli MS 182-1] gi|301330178|ref|ZP_07222840.1| dimethyladenosine transferase [Escherichia coli MS 78-1] gi|300419768|gb|EFK03079.1| dimethyladenosine transferase [Escherichia coli MS 182-1] gi|300843818|gb|EFK71578.1| dimethyladenosine transferase [Escherichia coli MS 78-1] Length = 273 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L + GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVFTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|315611880|ref|ZP_07886799.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296] gi|315316058|gb|EFU64091.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296] Length = 290 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F +++ L Sbjct: 235 KTLWNNLTGYFGKTEEVKEKLTKALDQAGLSPSVRGEALSLEEFASLSDALK 286 >gi|218531855|ref|YP_002422671.1| dimethyladenosine transferase [Methylobacterium chloromethanicum CM4] gi|218524158|gb|ACK84743.1| dimethyladenosine transferase [Methylobacterium chloromethanicum CM4] Length = 296 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 129/290 (44%), Positives = 190/290 (65%), Gaps = 10/290 (3%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 + L+ ++ + + PKK +GQNFL DLN+ +IA S+G+L+G+TV+E+G GPG LT+ Sbjct: 8 TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LL GA++V+ IE+D + P L +I++ +P RL++I DA+ D P+RI+A Sbjct: 68 ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGEG-PVRIVA 126 Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178 NLPYN+ T LL W+ ADT WPP+WES TL+FQ+EV ERI A ++ +YGRL VL Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLC 186 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 GWRT+AT++FD++P F P PKVTS+V+H P P PC + L+++T+ AFG+RRK LR Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPPPCRIADLERVTRAAFGQRRKMLR 246 Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT--DNQDIAI 284 QSLK + LL AG+ RAE + + F + L ++++ A+ Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGESRESAL 296 >gi|331650945|ref|ZP_08351973.1| dimethyladenosine transferase [Escherichia coli M718] gi|331051399|gb|EGI23448.1| dimethyladenosine transferase [Escherichia coli M718] Length = 273 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT +AF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTKAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|160939614|ref|ZP_02086962.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC BAA-613] gi|158437405|gb|EDP15169.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC BAA-613] Length = 292 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 146/289 (50%), Gaps = 19/289 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ I+ Y+ +K GQNFL+D ++L KI ++G V+EIG G G + Sbjct: 3 TLGNPKNTI-EIIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITGDDCVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L A KV+ +E D PIL + + N + +I D LK+D + +N P Sbjct: 62 TQYLAEH-AGKVVAVEIDTNLLPILDETLKGYSN-VTVINSDILKLDMNQLVDEYNDGRP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ ++ +++T++ QKEV +R+ S YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFESNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKT 236 + K ++ ++ P+ F P P V S VI + P E + ++ + +F +RRKT Sbjct: 177 QYYAKPYIVANVPPNCFIPRPNVGSAVIRLTRYKEPPVQVDEPGVMFRLIRASFNQRRKT 236 Query: 237 LRQSLKRL----GGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277 L+ L + + G+ ++R E L++E F ++N T Sbjct: 237 LQNGLNNSPEVPYTKEQIAVAIESLGVPASVRGEALTLEQFAGLSNYFT 285 >gi|156935428|ref|YP_001439344.1| dimethyladenosine transferase [Cronobacter sakazakii ATCC BAA-894] gi|166221663|sp|A7MIA7|RSMA_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|156533682|gb|ABU78508.1| hypothetical protein ESA_03287 [Cronobacter sakazakii ATCC BAA-894] Length = 273 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +DF + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMDFGELSQKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P L L ++T EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPTAFTPPPKVDSAVVRLVPHATPPHPVKELRLLSRLTTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL + +L GI+ +RAEN+S+ +C++ N L DN Sbjct: 228 SLGNVFSPEVLTSLGIDPAMRAENISVAQYCQMANYLADN 267 >gi|168187487|ref|ZP_02622122.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund] gi|169294621|gb|EDS76754.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund] Length = 281 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 143/278 (51%), Gaps = 13/278 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + K ++ Y K +GQNFL D N+L I S + VIEIG G G LT+ LL Sbjct: 5 TTKDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK- 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A++V IE D PIL + PN ++I DALKVDF + ++++ANLPY Sbjct: 64 KAKRVCAIELDSDLIPILTEELKDFPN-FKLIHKDALKVDFNEIIGDEKSVKVVANLPYY 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T ++ + ++SLT++ QKEV ERI ++ N YG LS+L + ++ Sbjct: 123 VTTPIIARLLKE---GYKFKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILR 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + P F P PKV S +I P E KI +++F RRKTLR ++K LG Sbjct: 180 KVPPTCFIPQPKVDSIIIKLDRLDEPRVKVKDKELFFKIVRQSFNMRRKTLRNAIKSLGD 239 Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E + + AGI+ R E LS+++F + + + + Sbjct: 240 VSGENIEKVFNDAGIDPRRRGETLSLQEFGDLADSVYN 277 >gi|167766021|ref|ZP_02438074.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1] gi|167712101|gb|EDS22680.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1] Length = 285 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N +++ ++ Y +K GQNFL+D +L+KI ++ V+EIG G G Sbjct: 1 MKLGNPKNTI-EVIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+V+ +E D+ PIL D S + N + I+ D LKVD K N Sbjct: 60 MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ + +S+T++ QKEV +R+ + + YG LS+ Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI + + + L ++ + +F +RRK Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDAPIKVTNEKLLFQLIRASFNQRRK 234 Query: 236 TLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL+ +K GG N L + + ++R E L++E F +++NIL Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283 >gi|56461332|ref|YP_156613.1| dimethyladenosine transferase [Idiomarina loihiensis L2TR] gi|62900479|sp|Q5QVN7|RSMA_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56180342|gb|AAV83064.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Idiomarina loihiensis L2TR] Length = 288 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 143/266 (53%), Gaps = 8/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+++I ++ L G +IEIG G LT+ + + V Sbjct: 17 HLGHRARKRFGQNFLNDDYIIEQIVDAINPLPGENLIEIGPGLAALTEPTVDRSGH-LKV 75 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L+ ++LE+IQ DAL +DF +F P R+ NLPYNI T L+F Sbjct: 76 IEIDRDLVERLQHH-PFLSSKLEVIQADALSIDFSQFAEEG-PARVFGNLPYNISTPLIF 133 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + + + QKEV +R+ A+ S YGR+SV K T + + P F Sbjct: 134 HLLK---FADDVKDMHFMLQKEVVDRLAAEPGSKSYGRISVGVQQACKVTPVVAVPPSAF 190 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S+V+ P+ P P ++ L + AF +RRKT+R +LK+L + Sbjct: 191 TPPPKVESSVVRLEPYAESPHPVKDKAQLHSLCLTAFNQRRKTIRNNLKQLVPAEQMEAL 250 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 GI+ R E LS++D+CRI++ LT++ Sbjct: 251 GIDPGARPETLSVDDYCRISDWLTEH 276 >gi|307709722|ref|ZP_07646173.1| dimethyladenosine transferase [Streptococcus mitis SK564] gi|307619424|gb|EFN98549.1| dimethyladenosine transferase [Streptococcus mitis SK564] Length = 290 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVVVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286 >gi|237749068|ref|ZP_04579548.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes OXCC13] gi|229380430|gb|EEO30521.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes OXCC13] Length = 256 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 93/260 (35%), Positives = 138/260 (53%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D ++L I + ++EIG G G +T+ LL + ++ VIE Sbjct: 2 KHIPRKRFGQNFLKDQSVLDDIVSAIAPKPTDHMLEIGPGMGAMTENLLPYLS-QMDVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFN 136 D+ LK ++L I Q DAL DF S RI+ NLPYNI + LLF+ Sbjct: 61 LDRDLVVYLKKRFPA--DKLTIHQGDALSFDFRTIGASSENKWRIVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + E + Q+EV ER+ A+ + YGRLSV+ W+ ++F + P F Sbjct: 119 LMNFSSC---IEDQHFMLQREVVERMVAEPGNKAYGRLSVMLQWQYDMELLFIVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ IP P C +L+K +AF +RRK LR +L L E+ L + GI+ Sbjct: 176 PMPRVDSAIVRMIPRETPEACSSVALEKTVTQAFSQRRKMLRNNLAPLFSESRLIELGID 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 R E+L++E F + N L Sbjct: 236 PTRRPEDLTVEQFILLANHL 255 >gi|325695462|gb|EGD37362.1| dimethyladenosine transferase [Streptococcus sanguinis SK150] Length = 290 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAES-ATEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESRIP---FSEFVVMMQREVADRISAQPNTKSYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRNQPPVEVQNEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSHFGKSEETKSKLTAALERADLSPSVRGEALSLEEFARLADALKS 287 >gi|300919604|ref|ZP_07136096.1| dimethyladenosine transferase [Escherichia coli MS 115-1] gi|300413350|gb|EFJ96660.1| dimethyladenosine transferase [Escherichia coli MS 115-1] Length = 273 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQRGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|297516941|ref|ZP_06935327.1| dimethyladenosine transferase [Escherichia coli OP50] Length = 273 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ IA + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIASAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|33152288|ref|NP_873641.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP] gi|62900573|sp|Q7VM33|RSMA_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33148511|gb|AAP96030.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP] Length = 289 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 12/272 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D+N++ I + + ++EIG G G LT+ + K+ Sbjct: 8 KHLGHTARKRFGQNFLSDMNVIHNIVAAINPRNEDFLLEIGPGLGALTEPVAEQ-VEKLT 66 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNI 129 VIE D+ L+ H ++L +I+ DAL+ +F +F+ IRI NLPYNI Sbjct: 67 VIELDRDLAERLRHHPFLH-HKLTVIEQDALRFNFRDYFDSLNLNHHQAIRIFGNLPYNI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + + Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLE 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ +P+ P P + L ++T AF +RRKTLR +L L Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPYKTLPYPVKDVYWLNRVTTHAFNQRRKTLRNALSTLFTA 242 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI RAENL+I D+ R+ N L DN Sbjct: 243 QQLEMLGINLTDRAENLTISDYARLANWLCDN 274 >gi|168464366|ref|ZP_02698269.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632741|gb|EDX51195.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 273 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRALAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270 >gi|323190266|gb|EFZ75542.1| dimethyladenosine transferase [Escherichia coli RN587/1] Length = 273 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L ++ + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAESAPL 270 >gi|317499422|ref|ZP_07957689.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893294|gb|EFV15509.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 285 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 153/289 (52%), Gaps = 19/289 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N +++ ++ Y +K GQNFL+D +L+KI ++ V+EIG G G Sbjct: 1 MKLGNPKNTI-EVIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+V+ +E D+ PIL D S + N + I+ D LKVD K N Sbjct: 60 MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ + +S+T++ QKEV +R+ + + YG LS+ Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI + + + + L ++ + +F +RRK Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDALIKVTNEKLLFQLIRASFNQRRK 234 Query: 236 TLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL+ +K GG N L + + ++R E L++E F +++NIL Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283 >gi|307132632|ref|YP_003884648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Dickeya dadantii 3937] gi|306530161|gb|ADN00092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Dickeya dadantii 3937] Length = 272 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 138/280 (49%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + V+E D+ L ++ ++L IIQ DA+ VDF P+R+ Sbjct: 53 IPVGER-IDSFTVVELDRDLAARL-EVHPTLRDKLTIIQQDAMTVDFAALSQQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + QKEV R+ A +S YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPDSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P L +IT EAF +RRKTLR Sbjct: 168 CQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPAVDTRILSRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L ++ N+RAEN++I +CR+ LT + Sbjct: 228 SLGNLFTPEQLTALEVDPNVRAENVTITQYCRLAEWLTAH 267 >gi|222031885|emb|CAP74623.1| Dimethyladenosine transferase [Escherichia coli LF82] gi|312944659|gb|ADR25486.1| dimethyladenosine transferase [Escherichia coli O83:H1 str. NRG 857C] Length = 273 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L GI+ +RAEN+S+ +C++ N L ++ + Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAESAPL 270 >gi|153854785|ref|ZP_01996019.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814] gi|149752692|gb|EDM62623.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814] Length = 292 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y +K GQNFL+D ++L KI +S+ + V+EIG G G + Sbjct: 5 TLGNPQNTI-EVLQKYNFSFQKKFGQNFLIDTHVLDKIIQSANITEDDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSP 118 TQ L A KVI +E D+ PIL+D S + N + +I +D LK+D +K + P Sbjct: 64 TQYLA-QAAGKVIAVEIDKNLIPILEDTLSGYDN-VRVINEDVLKLDLKKLADEENNGKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 VKVVANLPYYITTPIIMGLFENEVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236 + ++ ++ P+ F P PKV S VI H P+ E L I + +F +RRKT Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTCHQEKPVQVQDEKLMFNIIRASFNQRRKT 238 Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L LK E + G ++R E L++E+F R++++L+ Sbjct: 239 LANGLKNAATLDFTKEEVEAAIDALGKGASVRGETLTLEEFARLSDLLS 287 >gi|332288954|ref|YP_004419806.1| dimethyladenosine transferase [Gallibacterium anatis UMN179] gi|330431850|gb|AEC16909.1| dimethyladenosine transferase [Gallibacterium anatis UMN179] Length = 282 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 138/271 (50%), Gaps = 8/271 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I++ I + +IEIG G G LT+ + + V Sbjct: 6 HLGHTARKRFGQNFLHDDQIIQSIVAAINPQANDFLIEIGPGLGALTEPVAEQ-IEHLTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134 IE D+ L+ H +L +I+ D ++ DF++ P+RI NLPYNI T L+ Sbjct: 65 IELDRDLAERLRHHPFLHQ-KLTVIEQDVMRFDFQQLAQQAEKPLRIFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + QKEV R+ A NS YGRL+++ + + + ++ P Sbjct: 124 FHLFQYHD---VIQDMHFMLQKEVVNRLCAGPNSKAYGRLTIMAQYFCQVIPVLEVPPSA 180 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ +PH P P L L ++ +AF +RRKTLR SL L L + Sbjct: 181 FKPAPKVDSAVVRLVPHKVLPYPVKDLYWLNRVCTQAFNQRRKTLRNSLMDLFTAEQLVE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283 I+ RAENL+I D+ R+ N L DN +A Sbjct: 241 LEIKLTDRAENLTIADYARLANWLADNPPLA 271 >gi|327462724|gb|EGF09046.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057] Length = 290 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 147/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRNFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L + + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSYFGKSEATKGKLTAALERTDLSPSVRGEALSLEEFARLADALKS 287 >gi|109899726|ref|YP_662981.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c] gi|109702007|gb|ABG41927.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c] Length = 268 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 95/269 (35%), Positives = 140/269 (52%), Gaps = 7/269 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D I+ +I + G V+EIG G G LT+ + L K+ Sbjct: 4 QHLGHTARKRFGQNFLHDPYIIDQIVSAINPQVGQNVVEIGPGLGALTEPVCEL-IDKLT 62 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ L+ ++L I++ DALK DF + F+ P+R+ NLPYNI T L+ Sbjct: 63 VVELDRDLAQRLR-THPFIASKLNIVEKDALKFDFSELFSEEHPLRVFGNLPYNISTPLM 121 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + + QKEV R+ A + +YGRLSV+ + + + P Sbjct: 122 FHLFS---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGA 178 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S V+ IPH P+ E+L ++ +AF +RRKT+R SLK E L Sbjct: 179 FNPPPKVDSAVVRLIPHKVRPVEVKSEEALNRVCAQAFNQRRKTIRNSLKESLSEAQLIS 238 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281 I LRAENLS+ F +I ++ Q+ Sbjct: 239 LDINPELRAENLSLAQFGQIADLAFSTQE 267 >gi|255283478|ref|ZP_05348033.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469] gi|255265935|gb|EET59140.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469] Length = 298 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 19/287 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N +++ ++ Y+ +K GQNFL+D ++L KI ++ V+EIG G G +T Sbjct: 4 LSNPQNTI-AVIQKYEFAFQKKFGQNFLIDGHVLDKIIAAADITKEDFVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L A +V+ +E D+ PIL + + + N +EI+ +D LKVD N PI Sbjct: 63 QYLSE-AAGRVLAVEIDKMLIPILHETLAGYEN-VEILNEDILKVDIAALVEEKNGGKPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ AQ S YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLLEQHVP---VKSITVMVQKEVAQRMQAQPGSKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTL 237 + + + ++ P+ F P PKV S VI H P + + + + +F +RRKTL Sbjct: 178 YYCEPYIAANVPPNCFIPRPKVGSAVIRLTAHREPPVKTEHEKLMFALIRASFNQRRKTL 237 Query: 238 RQSLKRL----GGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276 L + + + G+ +R E L++E F ++ NIL Sbjct: 238 ANGLSNAPELTFTKEEITGAIEKLGVPAGVRGETLALEQFAQLANIL 284 >gi|322377595|ref|ZP_08052085.1| dimethyladenosine transferase [Streptococcus sp. M334] gi|321281360|gb|EFX58370.1| dimethyladenosine transferase [Streptococcus sp. M334] Length = 290 Score = 291 bits (745), Expect = 8e-77, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPA 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286 >gi|253576891|ref|ZP_04854216.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843758|gb|EES71781.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 298 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 22/295 (7%) Query: 1 MTMNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M++ + + I+ + KK +GQNFL+D NIL KI ++ +EIG G Sbjct: 1 MSIREDVSTPRRTKEIIQRHGFSFKKSLGQNFLIDQNILGKIVAAAELEKTQGALEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS- 116 G LT+ L A KV +E DQ+ PIL+++ +P+ + +I D LK+D + F Sbjct: 61 IGALTEKLAQE-AGKVAAVEIDQRLLPILQEVLEPYPH-VHVIHGDVLKLDLKALFAAEF 118 Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 S + ++ANLPY + T ++ + + + ++ QKEV ER+ A YG Sbjct: 119 SGVSGVSVVANLPYYVTTPIMMKLLEEKLP---LKHIVVMIQKEVAERMAATPGGKDYGS 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231 LS+ + + M+ + VF P P V S VI P + ++ Q +F Sbjct: 176 LSIAVQYYSTPEMICTVPHSVFIPQPNVESAVIRLTVREKPAVAVQDEAFFFEVVQASFA 235 Query: 232 KRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +RRKT+ +LK E LL +AGI+ + RAE LS+++F ++++ L + Sbjct: 236 QRRKTISNNLKSRFFPKEGRERLEQLLEEAGIQPSRRAETLSLDEFAKLSDTLLN 290 >gi|187732780|ref|YP_001878864.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94] gi|226732626|sp|B2U259|RSMA_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|187429772|gb|ACD09046.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94] Length = 273 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L G++ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMGLDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|227544731|ref|ZP_03974780.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A] gi|300909023|ref|ZP_07126486.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112] gi|227185271|gb|EEI65342.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A] gi|300894430|gb|EFK87788.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112] Length = 297 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 27/296 (9%) Query: 3 MNNKS-----HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I+ Y I KK GQNFL DLN+LK I E++ VIEIG G Sbjct: 1 MSNSPEIGSRTRTRAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113 G LT+ L A +V+ +E DQ P+LK++ S + N +++I D L+ + + Sbjct: 61 IGALTEQLA-QAAGEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEF 118 Query: 114 -NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 + S PI+++ANLPY I + +L N +++ P W ++ ++ QKEV +R+TA+ + YG Sbjct: 119 KDPSRPIKVVANLPYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYG 175 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEA 229 L++ ++ +A + FD+S VF PSP V S ++ P NP+P + L + Sbjct: 176 ELTLAIEYQMQAKIAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGC 235 Query: 230 FGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 F RRK+L +L+ + G++ +L Q I +R E L++E F + N L Sbjct: 236 FAHRRKSLWNNLQSVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANAL 291 >gi|324989790|gb|EGC21733.1| dimethyladenosine transferase [Streptococcus sanguinis SK353] gi|325686620|gb|EGD28646.1| dimethyladenosine transferase [Streptococcus sanguinis SK72] Length = 290 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287 >gi|15603074|ref|NP_246146.1| dimethyladenosine transferase [Pasteurella multocida subsp. multocida str. Pm70] gi|27151601|sp|Q9CLL5|RSMA_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|12721563|gb|AAK03293.1| KsgA [Pasteurella multocida subsp. multocida str. Pm70] Length = 288 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDNNVIHGIVSAIYPQKDQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIANLPYN 128 V+E D+ L+ H +++ +I+ DA++ DF + + +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLH-HKITVIETDAMQFDFGQLYRDANLAEKKQKMRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHDC---IQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ +PH L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPTAFKPAPKVDSAVVRLVPHKVLPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + L + GI+ RAENLSI D+ R+ N LTDN Sbjct: 240 ADQLTELGIDLTARAENLSIADYARLANWLTDN 272 >gi|307705634|ref|ZP_07642485.1| dimethyladenosine transferase [Streptococcus mitis SK597] gi|307620810|gb|EFN99895.1| dimethyladenosine transferase [Streptococcus mitis SK597] Length = 290 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + KI++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDESFFFKISKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286 >gi|322386716|ref|ZP_08060340.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100] gi|321268998|gb|EFX51934.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100] Length = 290 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 148/294 (50%), Gaps = 21/294 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVKDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTL +L G+ L QA + ++R E L++ DF R+ + L + Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLTAALEQAELSPSVRGEALTLADFARLADALKEQ 288 >gi|261867179|ref|YP_003255101.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412511|gb|ACX81882.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 287 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N+++ I + ++EIG G G LT+ + + Sbjct: 5 KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALTEPVAEQ-VEHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ + +I+ DA++ DF E+ +R+ NLPYN Sbjct: 64 VLELDRDLAERLRHH-PFLNQKFTVIETDAMQFDFSALYEQEQLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFHYH---HIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P PKV S V+ IPH P P L L ++ +AF +RRKTLR + L Sbjct: 180 EVPPSAFKPVPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFNQRRKTLRNAFSGLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENLSI D+ R+ N L DN Sbjct: 240 AGNLTALGIDLNARAENLSIADYARLANWLADN 272 >gi|225857560|ref|YP_002739071.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031] gi|254807890|sp|C1CMT3|RSMA_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225725962|gb|ACO21814.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031] gi|301794926|emb|CBW37388.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104] gi|332199997|gb|EGJ14071.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901] Length = 290 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPVPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+E+F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286 >gi|68249146|ref|YP_248258.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP] gi|145635368|ref|ZP_01791070.1| dimethyladenosine transferase [Haemophilus influenzae PittAA] gi|81336447|sp|Q4QMZ9|RSMA_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68057345|gb|AAX87598.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP] gi|145267374|gb|EDK07376.1| dimethyladenosine transferase [Haemophilus influenzae PittAA] Length = 287 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|311696169|gb|ADP99042.1| dimethyladenosine transferase [marine bacterium HP15] Length = 276 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 91/271 (33%), Positives = 145/271 (53%), Gaps = 8/271 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + +K GQNFL D ++++I + ++EIG G G LT+ +L + K+ Sbjct: 3 NKAGHQARKRFGQNFLHDPGVIEQIIRAINPKPDDAIVEIGPGLGALTEEILAVNP-KLQ 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ P+L+ +P I + DALK DF + + P+RII NLPYNI T L+ Sbjct: 62 VVELDRDLIPVLRTKFFNYPE-FRIHEADALKFDFSQLM-VDRPLRIIGNLPYNISTPLI 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +S + + + QKEV +R+ A +YGRL ++T + + +F++ P Sbjct: 120 FHLLSQAG---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGA 176 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S ++ +PH P P L +L+ + + AF RRKTLR++L + L Sbjct: 177 FRPAPKVDSAIVRLVPHKTLPHPAKDLTTLQAVVRTAFNARRKTLRKALGGMVSAEQLRS 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283 GI LR ENL++ DF I ++L + A Sbjct: 237 LGINDGLRPENLALADFVAIADLLFTEKGAA 267 >gi|153815218|ref|ZP_01967886.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756] gi|317502323|ref|ZP_07960492.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089927|ref|ZP_08338819.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 3_1_46FAA] gi|145847477|gb|EDK24395.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756] gi|316896279|gb|EFV18381.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403159|gb|EGG82720.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 292 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 19/293 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y I +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTI-AVLQKYNFIFQKKFGQNFLIDTHVLDKIIRAAEIGKDDLVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KVI +E D+ PIL+D + N + +I +D LKVD K N P Sbjct: 64 TQYLSC-AAGKVIAVEIDRALIPILEDTLDGYDN-VRVINEDVLKVDIRKLVEEENEGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFENHVP---IKSITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI H +P + + ++ + +F +RRKT Sbjct: 179 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERHEHPPVEVRDEKLMFRVIRASFNQRRKT 238 Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L LK E + + G ++R E L++ +F ++ N D ++ Sbjct: 239 LANGLKNSPEIDFSKEEIEGAIEKLGKGASVRGEALTLAEFAQLANYFCDLRE 291 >gi|332360011|gb|EGJ37825.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056] Length = 290 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKV+ +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSYFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287 >gi|283797637|ref|ZP_06346790.1| dimethyladenosine transferase [Clostridium sp. M62/1] gi|291074750|gb|EFE12114.1| dimethyladenosine transferase [Clostridium sp. M62/1] Length = 310 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 148/289 (51%), Gaps = 19/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++ I+ Y +K GQNFL+D+++L KI ++G V+EIG G G +T Sbjct: 28 LGNPQKTI-QIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMT 86 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A++V+ +E D PIL + + + N + +I D LKVD +K +N PI Sbjct: 87 QYLAES-AKQVVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPI 144 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +++T++ QKEV +R+ S YG LS+ Sbjct: 145 KVVANLPYYITTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 201 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI H P + + K+ + +F +RRKTL Sbjct: 202 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL 261 Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + Q G+ ++R E L++E F R++++L + Sbjct: 262 LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310 >gi|148985565|ref|ZP_01818754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71] gi|147922285|gb|EDK73406.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71] gi|301800746|emb|CBW33394.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141] Length = 290 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAE-CAAQVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|325697392|gb|EGD39278.1| dimethyladenosine transferase [Streptococcus sanguinis SK160] Length = 290 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLTQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L ++ + ++R E LS+E+F R+ + L Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERSELSPSVRGEALSLEEFARLADALKS 287 >gi|150387987|ref|YP_001318036.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF] gi|166987687|sp|A6TJK9|RSMA_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149947849|gb|ABR46377.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF] Length = 287 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 17/292 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K I+ YK K +GQNFL+D NIL+ I + + VIEIG G G Sbjct: 1 MDKIVSPSKTKAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LTQ + A KV+ IE D+ PILK + + N +E+I D LKVD + Sbjct: 61 LTQFIAE-KAHKVVAIEIDRNLIPILKHTLADYQN-VEVINQDVLKVDLHQLIADKFEGK 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+++IANLPY + T ++ ++ +SL ++ QKEV R+ A + YG LS+ Sbjct: 119 PVKVIANLPYYVTTPIVMRFLEEKVP---VDSLVIMIQKEVAVRMQAGPGTKDYGALSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRK 235 + ++ + P VF P PKV S VI + P + + + ++AFGKRRK Sbjct: 176 VQYYCNPEILLKVPPSVFIPQPKVESIVIKLQVYPEPKVKVERDDLMFALVKDAFGKRRK 235 Query: 236 TLRQS-------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 TL + L + L A I+ N R E L+IE++ +T + Q Sbjct: 236 TLLNALSSGLLQLSKEIVRESLEAANIDENRRGETLTIEEYATLTKEVAARQ 287 >gi|52424685|ref|YP_087822.1| dimethyladenosine transferase [Mannheimia succiniciproducens MBEL55E] gi|62900507|sp|Q65UX3|RSMA_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52306737|gb|AAU37237.1| KsgA protein [Mannheimia succiniciproducens MBEL55E] Length = 288 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 95/273 (34%), Positives = 142/273 (52%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N+++ I + G ++EIG G G LT+ + R + Sbjct: 5 RHLGHTARKRFGQNFLHDDNVIQGIVAAIYPQKGQFLVEIGPGLGALTEPVADQTDR-LT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAQRLRHHPFLHQ-KLNVIETDAMQFDFGKLYEDEHLAEQGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + + + QKEV +R+ A NS YGRL+++T + + + Sbjct: 123 ISTPLIFHLLK---FYDKIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMTQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++T +AF +RRKTLR +L L Sbjct: 180 EVPPTAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVTSQAFNQRRKTLRNALSTLFT 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ RAENLSI D+ R+ N L DN Sbjct: 240 PEQLTALNIDLTARAENLSIADYARLANWLADN 272 >gi|307707668|ref|ZP_07644148.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261] gi|307616280|gb|EFN95473.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261] Length = 290 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKV+ + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVNLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286 >gi|15903841|ref|NP_359391.1| dimethyladenosine transferase [Streptococcus pneumoniae R6] gi|116515767|ref|YP_817204.1| dimethyladenosine transferase [Streptococcus pneumoniae D39] gi|168492040|ref|ZP_02716183.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04] gi|33516933|sp|Q8DND3|RSMA_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122277950|sp|Q04II4|RSMA_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15459484|gb|AAL00602.1| Dimethyladenosine transferase [Streptococcus pneumoniae R6] gi|116076343|gb|ABJ54063.1| dimethyladenosine transferase [Streptococcus pneumoniae D39] gi|183573705|gb|EDT94233.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04] Length = 290 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|225386275|ref|ZP_03756039.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme DSM 15981] gi|225047554|gb|EEG57800.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme DSM 15981] Length = 303 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 19/290 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++ I+ Y+ + +K GQNFL+D ++L KI ++G V+EIG G G +T Sbjct: 19 LGNPKETI-EIIQKYQFVFQKKFGQNFLIDPHVLDKIITAAGIGPEDCVLEIGPGIGTMT 77 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPI 119 Q L AR+VI +E D PIL + + N + +I DD LKVD + + PI Sbjct: 78 QYLAEH-ARQVIAVEIDANLIPILGETLKDYSN-VTVINDDILKVDINRLVDEHNGGKPI 135 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +++T++ QKEV +R+ S YG LS+ Sbjct: 136 KVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 192 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + ++ ++ P+ F P P V S VI + P + ++ + +F +RRKTL Sbjct: 193 YYASPYIVANVPPNCFIPRPNVGSAVIRLTRYKEPPVRVTDPALMFRLIRASFNQRRKTL 252 Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + L + G+ ++R E L++E F + N T++ Sbjct: 253 QNGLNNSPELAYTKENIAEAIAGLGLPASVRGEALTLEQFAALANYFTEH 302 >gi|312863719|ref|ZP_07723957.1| dimethyladenosine transferase [Streptococcus vestibularis F0396] gi|322515990|ref|ZP_08068928.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC 49124] gi|311101255|gb|EFQ59460.1| dimethyladenosine transferase [Streptococcus vestibularis F0396] gi|322125525|gb|EFX96866.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC 49124] Length = 290 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D++ PIL+D H N +++I +D LK D + +F N + Sbjct: 60 LTEFLAENAA-EVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + +E ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FEEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF R+++ L + Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLEQALENATIKPSIRGEALSISDFARLSDALRE 287 >gi|328956557|ref|YP_004373943.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp. 17-4] gi|328672881|gb|AEB28927.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp. 17-4] Length = 297 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 20/287 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K I+ Y KK +GQNF++D NIL I +S VIE+G G G LT+ L Sbjct: 10 PSRTKEIMEKYGFSVKKSLGQNFIVDPNILNNIVAASNIDKNTNVIEVGPGIGALTEHLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 +++VI E D + P+L D S + N + I+ D LK++ + ++ P+ ++ Sbjct: 70 -RASKEVIAFEIDNRLLPVLADTLSPYDN-VSIVHSDVLKINLQKTLPEMIDLDEPLVVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ +++ P + LT++ QKEV ERITA S YG LS+ + Sbjct: 128 ANLPYYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGSLSIAIQYYM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A + F + VF P P V S +I P +S + + AF +RRKTL + Sbjct: 185 EAEVAFIVPKTVFVPQPNVDSAIIKLTRRATPSVTVKNEKSFFALVRSAFVQRRKTLWNN 244 Query: 241 LKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L G+ L A I+ R E LS+E+F R+++ + + Sbjct: 245 LLIRYGKEDSTREKLTQALEAASIDPKRRGETLSLEEFGRLSDAIDE 291 >gi|196250755|ref|ZP_03149442.1| dimethyladenosine transferase [Geobacillus sp. G11MC16] gi|196209705|gb|EDY04477.1| dimethyladenosine transferase [Geobacillus sp. G11MC16] Length = 478 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 20/282 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL+ Y KK +GQNFL+D NIL+KI +++G IEIG G G LT+ L Sbjct: 196 TKEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARR- 254 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV+ E D + PIL D S + N + II D LK D + F S ++ANL Sbjct: 255 AKKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRMVVANL 313 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 314 PYYVTTPIIMKLLTERLP---IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 370 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSL-- 241 ++ + VF P P V S VI +P E ++ + +F +RRKTL +L Sbjct: 371 VVMTVPRTVFMPQPNVDSAVIRLTKRSHPPVAVEDEEVFFQVVRASFAQRRKTLLNNLLN 430 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ E L GI+ R E L + +F ++N L Sbjct: 431 NLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 472 >gi|293391018|ref|ZP_06635352.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951552|gb|EFE01671.1| dimethyladenosine transferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 287 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 137/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N+++ I + ++EIG G G LT+ + + Sbjct: 5 KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALTEPVAEQ-VEHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E+ +R+ NLPYN Sbjct: 64 VLELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFSSLYEQERLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFHYH---HIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR + L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFNQRRKTLRNAFSGLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI N RAENLSI D+ R+ N L DN Sbjct: 240 AGNLTALGINLNARAENLSIADYARLANWLADN 272 >gi|111658871|ref|ZP_01409492.1| hypothetical protein SpneT_02000042 [Streptococcus pneumoniae TIGR4] gi|148993153|ref|ZP_01822719.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68] gi|149021935|ref|ZP_01835922.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72] gi|168489990|ref|ZP_02714189.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195] gi|221232709|ref|YP_002511863.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC 700669] gi|225861802|ref|YP_002743311.1| dimethyladenosine transferase [Streptococcus pneumoniae Taiwan19F-14] gi|298230181|ref|ZP_06963862.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255257|ref|ZP_06978843.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503755|ref|YP_003725695.1| dimethyladenosine transferase [Streptococcus pneumoniae TCH8431/19A] gi|27151593|sp|Q97NN5|RSMA_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807887|sp|B8ZNY9|RSMA_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807891|sp|C1CTN9|RSMA_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147928127|gb|EDK79145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68] gi|147929973|gb|EDK80961.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72] gi|183571617|gb|EDT92145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195] gi|220675171|emb|CAR69755.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC 700669] gi|225727338|gb|ACO23189.1| dimethyladenosine transferase [Streptococcus pneumoniae Taiwan19F-14] gi|298239350|gb|ADI70481.1| dimethyladenosine transferase [Streptococcus pneumoniae TCH8431/19A] gi|327389149|gb|EGE87495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375] gi|332072066|gb|EGI82553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570] Length = 290 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1] gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1] Length = 296 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 13/286 (4%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 + + + +L + + KK GQNFL+D NILKKI ++ ++EIG G G+L Sbjct: 12 SKLSSPGHVSRLLEQHGVKLKKKWGQNFLVDENILKKIISAADVQKSDRILEIGPGIGSL 71 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 TQ L A +V+ +E D + P+L++ +++ N +EII DA+ D P+++ Sbjct: 72 TQKLAE-NASRVLTVEIDTRLIPVLRETLAEYDN-VEIIHGDAMDFDPAPVCEEG-PVKL 128 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ T LL+ W+ + L + QKEV ERI A+ S YG LSV+ + Sbjct: 129 VANLPYNVATPLLYRWL--KDSRNCFSRLVCMVQKEVAERIVAKPGSKAYGTLSVICNYA 186 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + + FD+ VFFP P V+S V+ IP+ P K+ + F +RRKTL Sbjct: 187 ARCEIAFDVPRTVFFPRPDVSSAVVQLIPYHVPAEDVADDAFFFKVVEAVFAQRRKTLLN 246 Query: 240 SLKRLGG--ENLLH----QAGIETNLRAENLSIEDFCRITNILTDN 279 +L + L I+ + R E L++++F +++ +L + Sbjct: 247 TLNAAFPLTKEQLTAVCSAVEIDLSRRGETLTLQEFAKLSRVLYNK 292 >gi|332305311|ref|YP_004433162.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172640|gb|AEE21894.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 268 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 92/263 (34%), Positives = 137/263 (52%), Gaps = 7/263 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D I+ +I + +G V+EIG G G +T+ + L K+ Sbjct: 4 QHLGHTARKRFGQNFLHDPYIIDQIVSAINPQNGQNVVEIGPGLGAITEPVCEL-IDKLT 62 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ L+ ++L I++ DALK DF + F+ +P+R+ NLPYNI T L+ Sbjct: 63 VVELDRDLAQRLR-THPFIASKLNIVEKDALKFDFSELFSEENPLRVFGNLPYNISTPLM 121 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + + QKEV R+ A + +YGRLSV+ + + + P Sbjct: 122 FHLFS---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGA 178 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S V+ IPH E L ++ +AF +RRKT+R SLK E L Sbjct: 179 FNPPPKVDSAVVRLIPHKVRPVAVKSEEVLNRVCAQAFNQRRKTIRNSLKESVSEAQLLS 238 Query: 253 AGIETNLRAENLSIEDFCRITNI 275 I LRAENLS+ F +I ++ Sbjct: 239 LDINPELRAENLSLAQFGQIADL 261 >gi|306830179|ref|ZP_07463363.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249] gi|304427705|gb|EFM30801.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249] Length = 290 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 148/292 (50%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLIKALDQAGLSPSVRGEALSLAEFASLADALK 286 >gi|225859740|ref|YP_002741250.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585] gi|254807886|sp|C1CA29|RSMA_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225720605|gb|ACO16459.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585] Length = 290 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|240145093|ref|ZP_04743694.1| dimethyladenosine transferase [Roseburia intestinalis L1-82] gi|257202765|gb|EEV01050.1| dimethyladenosine transferase [Roseburia intestinalis L1-82] Length = 290 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 19/292 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ +++ +L Y +K GQNFL+D ++L+KI E++G V+EIG G G + Sbjct: 3 TLGIPQNTI-AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V +E D PIL+D S + N + +I D LK+D K N P Sbjct: 62 TQYLCE-NAREVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236 + K ++ ++ P+ F P P V S VI H P+ E L I + +F +RRKT Sbjct: 177 QFYAKPEIVANVPPNCFMPRPNVGSAVIRLTRHEEVPVQVDDEKLMFHIIRASFNQRRKT 236 Query: 237 LRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L L L E + + + G +R E L++E F ++NI+ + Q Sbjct: 237 LANGLSNAPQVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288 >gi|325663734|ref|ZP_08152138.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325470227|gb|EGC73460.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 298 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 151/288 (52%), Gaps = 19/288 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 5 TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V+ +E D+ PIL+D S + N + +I +D LK+D K N P Sbjct: 64 TQYLAC-AAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---VQSITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 + K + ++ P+ F P PKV S VI H P + + +I + +F +RRKT Sbjct: 179 QYYAKPYIAANVPPNCFMPRPKVGSAVIRLECHEEPPVQVEDEKLMFRIIRASFNQRRKT 238 Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L LK R G E + + G ++R E L++E+F ++NI+ Sbjct: 239 LANGLKNSPEISLSREGIEQAIAELGKGASVRGEALNLEEFATLSNIV 286 >gi|319897933|ref|YP_004136130.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3031] gi|317433439|emb|CBY81821.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3031] Length = 287 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVAEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|322391321|ref|ZP_08064791.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780] gi|321145747|gb|EFX41138.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780] Length = 290 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 148/292 (50%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAKPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E L +E+F + + L Sbjct: 235 KTLWNNLTGYFGKTDEVKDKLTKALDQAGLSPSVRGEALGLEEFASLADALK 286 >gi|145637409|ref|ZP_01793068.1| dimethyladenosine transferase [Haemophilus influenzae PittHH] gi|145269355|gb|EDK09299.1| dimethyladenosine transferase [Haemophilus influenzae PittHH] Length = 287 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 92/276 (33%), Positives = 139/276 (50%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADNSPA 275 >gi|293364728|ref|ZP_06611445.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] gi|307702974|ref|ZP_07639921.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] gi|291316178|gb|EFE56614.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] gi|307623367|gb|EFO02357.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037] Length = 290 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 148/292 (50%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLTERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286 >gi|255658924|ref|ZP_05404333.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544] gi|260848874|gb|EEX68881.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544] Length = 292 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 142/277 (51%), Gaps = 13/277 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + + K +GQNFL+D I++ I E++ G V+EIG G G LTQ L GA Sbjct: 22 ILKAFGLRMSKKLGQNFLIDARIVQGIVEAAEIEPGDRVLEIGPGIGTLTQGLAEAGAD- 80 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V +E D++ +LK+ + N + I+ D LKV+ + +P ++ ANLPY I T Sbjct: 81 VTAVELDKKLPTVLKETLKAYDN-VRIVPGDILKVNIPEIMG-DAPFKVAANLPYYITTP 138 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + + + Q+EV ER+TA+ S YG LSV + T+ ++ D+ P Sbjct: 139 ILMTLLERRLP---ITHMVTMVQREVAERMTAKPGSRIYGALSVAVQYYTEPQIVLDVPP 195 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLK-----RLG 245 F P+P+V S V+ P + ++ + AFG+RRKTL +LK + Sbjct: 196 RSFIPAPEVMSVVVSCRVRKEPAVAVQDEKLFFRVVKAAFGQRRKTLMNALKGGGFSKEA 255 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + L Q+GI+ R E L++E+F R+ + ++ Sbjct: 256 VRDALEQSGIDPTRRGETLTLEEFGRLADAFAAEENA 292 >gi|330993925|ref|ZP_08317855.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter sp. SXCC-1] gi|329758871|gb|EGG75385.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter sp. SXCC-1] Length = 281 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 110/267 (41%), Positives = 164/267 (61%), Gaps = 6/267 (2%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ ++ + + +K +GQ+FLLD I +IA +G L G V+E+G GPG LT+ LL Sbjct: 13 LRETIARHGLDARKALGQHFLLDPGITARIAGLAGDLAGQNVVEVGPGPGGLTRALLDSE 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V+ +E D + I+ +++S+ RLE+I+ DA+++D +P ++IANLPYN+ Sbjct: 73 AGRVVAVEVDTRAVAIITELASRAGGRLEVIEADAMRLDLTTL--CPAPRQVIANLPYNV 130 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT LL W+ W LTL+FQ+EV ERI A S HYGRL VL W + ++ Sbjct: 131 GTPLLVGWLRQAAA---WTRLTLMFQQEVAERICAAPGSAHYGRLGVLAQWTCRCGVLMH 187 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 I P F P P+V S V+ IPH + P +++++T AFG+RRK LR +LK LGGE+ Sbjct: 188 IPPGAFSPPPRVHSAVVGLIPHAHQPDAALFRAMEQVTAAAFGQRRKMLRGALKPLGGES 247 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275 LL +AGI+ + RAE L I +F R+ + Sbjct: 248 LLAEAGIDGSRRAETLDIAEFDRLARL 274 >gi|145640522|ref|ZP_01796106.1| dimethyladenosine transferase [Haemophilus influenzae R3021] gi|145275108|gb|EDK14970.1| dimethyladenosine transferase [Haemophilus influenzae 22.4-21] Length = 287 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 92/276 (33%), Positives = 139/276 (50%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADNSPA 275 >gi|149012426|ref|ZP_01833457.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75] gi|147763482|gb|EDK70418.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75] Length = 290 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFACLADALK 286 >gi|56476032|ref|YP_157621.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1] gi|62900475|sp|Q5P7J1|RSMA_AROAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56312075|emb|CAI06720.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1] Length = 265 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 96/268 (35%), Positives = 144/268 (53%), Gaps = 11/268 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D NI++KI ++ + G TV+EIG G G +T L+ + V+E Sbjct: 4 HRARKRFGQNFLSDPNIIRKIIDAIHPVPGETVVEIGPGLGAMTDPLVERLGH-LHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L + S P RL I + DALK D F + +P+R++ NLPYNI T LLF+ Sbjct: 63 DRDLIARLHERYS--PERLTIHEGDALKFD---FATLGAPLRVVGNLPYNISTPLLFHL- 116 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +T + QKEV R+ A+ + YGRLSV+ +R + +FD+ P F P+ Sbjct: 117 --AEFAARVRDMTFMLQKEVVMRMVAEPGTEDYGRLSVMLQYRFRMGRLFDVPPGAFRPA 174 Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKVTS+++ +P L+++ AFG+RRKTLR +L+ E GI+ Sbjct: 175 PKVTSSIVRMVPLPAEQRTAKDEALLERVVAAAFGQRRKTLRNTLREWLDEADFPALGID 234 Query: 257 TNLRAENLSIEDFCRITNILTDNQDIAI 284 LR E L++ D+ ITN + A+ Sbjct: 235 PGLRGERLTVADYVAITNYIAAKSPRAL 262 >gi|152978411|ref|YP_001344040.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z] gi|150840134|gb|ABR74105.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z] Length = 288 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 144/273 (52%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N+++ I + G ++EIG G G LT+ + R + Sbjct: 6 RHLGHTARKRFGQNFLHDDNVIQSIVAAIYPQKGQFLVEIGPGLGALTEPVADRLER-LT 64 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF K + +R+ NLPYN Sbjct: 65 VVELDRDLAERLRHHPFLHQ-KLNVIEADAMQFDFGKLYADANLAEQGQKLRVFGNLPYN 123 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + + + QKEV +R+ A NS YGRL+++T + + + Sbjct: 124 ISTPLIFHLLK---FYDKIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMTQYFCQVMPVL 180 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++T +AF +RRKTLR +L L Sbjct: 181 EVPPTAFKPAPKVDSAVVRLIPHKTLPHPAKDLYWLNRVTSQAFNQRRKTLRNALSTLFS 240 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L G++ RAENL+I D+ R+ + L DN Sbjct: 241 PENLTALGVDLTARAENLTIADYVRLADWLYDN 273 >gi|323140326|ref|ZP_08075258.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067] gi|322415184|gb|EFY05971.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067] Length = 283 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 138/272 (50%), Gaps = 13/272 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL +K+ K +GQNFL+D NI+++I E++ V+E+G G G LTQ L GA Sbjct: 15 ILHRFKLRADKKLGQNFLIDENIVRRIVEAAELSPADKVLEVGPGIGTLTQGLAESGAD- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V+ +E D++ P+L + N + I+ D L+V+ + ++ ANLPY I T Sbjct: 74 VVAVELDKRLLPVLDVTLEGYDN-VRIVNGDILQVNIMETVAAPE-FKVCANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F + E L + QKEV ER+ A+ S YG LSV + T+ + F + P Sbjct: 132 IIFALLEKRLP---MERLVAMVQKEVAERMAAKPGSRDYGALSVAIQYYTEPEIAFIVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG---- 246 F P+P V S VI P C +I + AF RRK L SLK +G Sbjct: 189 TSFIPAPAVDSAVIVCKRRSEPPVKVCDEALFFRIVKAAFSLRRKMLSNSLKNMGINSEQ 248 Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L +AG++ RAE LS+EDF +TN + Sbjct: 249 CSQWLQRAGVDGKRRAETLSLEDFAALTNTFS 280 >gi|182420084|ref|ZP_02951318.1| dimethyladenosine transferase [Clostridium butyricum 5521] gi|237669472|ref|ZP_04529452.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376121|gb|EDT73708.1| dimethyladenosine transferase [Clostridium butyricum 5521] gi|237654916|gb|EEP52476.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 281 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 147/285 (51%), Gaps = 12/285 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ K + + ++ Y K +GQNFL+D ++L I + + D +IEIG G G LT Sbjct: 1 MDLKDYKTQELVKKYNFKFSKSLGQNFLIDDSVLTDIVDGASVDDKDFIIEIGPGVGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL A+KV IE D PIL++ +H N ++I +DALKVDF ++++ Sbjct: 61 AKLLM-KAKKVTSIELDNDLIPILQEELGEHEN-FDLIHNDALKVDFNSLIGDEPSVKLV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + ++SLT++ QKEV ERI A+ N YG LSVL + Sbjct: 119 ANLPYYVTTPIIVKLLKD---GYNFKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ- 239 +++ ++P F P PKV S VI P + + + F RRKTL Sbjct: 176 NTSIVRRVAPSCFIPRPKVESIVIRLDRLEAPRVNVKDENLMFALVRAGFNMRRKTLWNA 235 Query: 240 ----SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L + E ++GI+ RAE LSIE+F +++ + D + Sbjct: 236 TKTFNLSKEKLEEAFEKSGIDPKRRAETLSIEEFAHLSDCIYDAK 280 >gi|290581127|ref|YP_003485519.1| dimethyladenosine transferase [Streptococcus mutans NN2025] gi|254998026|dbj|BAH88627.1| dimethyladenosine transferase [Streptococcus mutans NN2025] Length = 291 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MHIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + IL D N ++++ +D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVSILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++ + AF RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFRVGKAAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E L+I DF R+ + L + Sbjct: 235 KTLWNNLTSHFGKSKEVKVKLEQALEAADIKPSIRGEALTITDFARLADALRE 287 >gi|260596475|ref|YP_003209046.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Cronobacter turicensis z3032] gi|260215652|emb|CBA27949.1| Dimethyladenosine transferase [Cronobacter turicensis z3032] Length = 273 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 142/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +DF + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMDFGELSQKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P L L ++T EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPTAFTPPPKVDSAVVRLVPHATPPHPVKELRLLSRLTTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL + ++L G++ +RAEN+S+ +C++ N L DN Sbjct: 228 SLGNVFTPDVLVSLGVDPAMRAENISVAQYCQMANYLADN 267 >gi|52078537|ref|YP_077328.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580] gi|52783899|ref|YP_089728.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580] gi|319648566|ref|ZP_08002780.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2] gi|62900505|sp|Q65PH9|RSMA_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52001748|gb|AAU21690.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580] gi|52346401|gb|AAU39035.1| KsgA [Bacillus licheniformis ATCC 14580] gi|317389333|gb|EFV70146.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2] Length = 292 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL+ Y KK +GQNFL+D NIL +I + +G + VIEIG G G LT+ L Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV E DQ+ PIL+D S + N + +I D LK D ++ F + ++ANL Sbjct: 70 AKKVTAFEIDQRLLPILEDTLSPYDN-VTVIHQDVLKADVRAVMDEQFQDCDEVMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + + ++ QKEV +R+ A+ +S YG LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVADRMAAKPSSKEYGSLSIAVQFYTEAK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241 + ++ VF P P V S VI P ++ ++ + +F +RRKTL +L Sbjct: 186 TVMNVPKTVFVPQPNVDSAVIRLTLRKEPAVAVQDAAFFFQVVKASFAQRRKTLFNNLVN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + E L + I+ R E+LSIE+F +++ L + Sbjct: 246 NLPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLRE 289 >gi|16272493|ref|NP_438707.1| dimethyladenosine transferase [Haemophilus influenzae Rd KW20] gi|145628930|ref|ZP_01784730.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21] gi|260580996|ref|ZP_05848819.1| dimethyladenosine transferase [Haemophilus influenzae RdAW] gi|1170712|sp|P44749|RSMA_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|1573534|gb|AAC22207.1| dimethyladenosine transferase (ksgA) [Haemophilus influenzae Rd KW20] gi|144979400|gb|EDJ89086.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21] gi|260092355|gb|EEW76295.1| dimethyladenosine transferase [Haemophilus influenzae RdAW] Length = 287 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|182684919|ref|YP_001836666.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14] gi|303254092|ref|ZP_07340207.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455] gi|303260358|ref|ZP_07346328.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293] gi|303262506|ref|ZP_07348448.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292] gi|303265137|ref|ZP_07351050.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397] gi|303266001|ref|ZP_07351896.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457] gi|303268067|ref|ZP_07353868.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458] gi|226732631|sp|B2IM67|RSMA_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|182630253|gb|ACB91201.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14] gi|301802662|emb|CBW35428.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200] gi|302598925|gb|EFL65956.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455] gi|302636406|gb|EFL66899.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292] gi|302638524|gb|EFL68989.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293] gi|302642427|gb|EFL72773.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458] gi|302644442|gb|EFL74694.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457] gi|302645354|gb|EFL75588.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397] Length = 290 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-QVMTFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|308066864|ref|YP_003868469.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681] gi|305856143|gb|ADM67931.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681] Length = 294 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 145/286 (50%), Gaps = 19/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K I+ + KK +GQNFL+D NIL KI ++G + +EIG G G LT+ L Sbjct: 10 PRRTKDIIQRHGFSFKKSLGQNFLIDQNILNKIVNAAGLDETKGALEIGPGIGALTEKLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122 A+ V +E DQ+ PIL+++ + + + +++ D LK+D + F S + ++ Sbjct: 70 QS-AKAVTAVEIDQRLLPILEEVLAPYEH-VKVRHGDVLKLDLREVFAADFADVSKVSVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + E++ ++ QKEV ER+ A + YG LS+ + + Sbjct: 128 ANLPYYVTTPILMRLLEDKLP---LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYS 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 + ++ + VF P P V S VI P + ++ AF +RRKT+ + Sbjct: 185 EPELVCIVPNTVFIPQPNVESAVIRLRVREAPPVEVVDEKHFFEVVHAAFAQRRKTISNN 244 Query: 241 LKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK E LL QAGIE + R E LSIE+F R++ +L + Sbjct: 245 LKSRFFTKENRDTLEPLLQQAGIEPSRRGETLSIEEFARLSAVLLE 290 >gi|145630268|ref|ZP_01786049.1| dimethyladenosine transferase [Haemophilus influenzae R3021] gi|144984003|gb|EDJ91440.1| dimethyladenosine transferase [Haemophilus influenzae R3021] Length = 287 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L+DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLSDN 272 >gi|148825174|ref|YP_001289927.1| dimethyladenosine transferase [Haemophilus influenzae PittEE] gi|148827743|ref|YP_001292496.1| dimethyladenosine transferase [Haemophilus influenzae PittGG] gi|229845712|ref|ZP_04465834.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1] gi|229846634|ref|ZP_04466742.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1] gi|166221669|sp|A5U9U3|RSMA_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221670|sp|A5UH57|RSMA_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|148715334|gb|ABQ97544.1| dimethyladenosine transferase [Haemophilus influenzae PittEE] gi|148718985|gb|ABR00113.1| dimethyladenosine transferase [Haemophilus influenzae PittGG] gi|229810727|gb|EEP46445.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1] gi|229811354|gb|EEP47061.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1] gi|309972298|gb|ADO95499.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae R2846] Length = 287 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|300715279|ref|YP_003740082.1| Dimethyladenosine transferase [Erwinia billingiae Eb661] gi|299061115|emb|CAX58222.1| Dimethyladenosine transferase [Erwinia billingiae Eb661] Length = 279 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 138/280 (49%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D I+ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQYIIDSIVSAIHPQKGEAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 + + + VIE D+ L+ +L I Q DA+ DF ++ +R+ Sbjct: 53 EPVGERL-DAMTVIEIDRDLAARLQ-THPFLGPKLTIFQQDAMAFDFAEYAREKGQSLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S T + + QKEV R+ A S YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYATA---IRDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH + L +IT EAFGKRRKTLR Sbjct: 168 CQVIPVLEVPPESFTPAPKVDSAVVRLMPHAKIEHPVTDMRVLTRITTEAFGKRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L +L + I+ LRAEN+++ +C++ N L + Sbjct: 228 SLGHLFSLEVLQEMNIDPTLRAENITVAQYCQLANWLIAH 267 >gi|327438098|dbj|BAK14463.1| dimethyladenosine transferase [Solibacillus silvestris StLB046] Length = 295 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 144/285 (50%), Gaps = 20/285 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL+ I + + IE+G G G LT+ L Sbjct: 11 TKEILEKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHLA-RE 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125 A+KV+ E DQ+ P+L+D S + N ++I+ D LK D + P I ++ANL Sbjct: 70 AKKVVSFEIDQRLLPVLEDTLSPYDN-VKIVHSDILKADVAQVIEEEMPGIEDIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L ++ ++ QKEV +RITA+ + YG LS+ + A Sbjct: 129 PYYVTTPILMKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKAYGSLSIAIQFYVTAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK- 242 + + VF P P V S VI I H NP + L ++++ +F +RRKT+ +L+ Sbjct: 186 IAMVVPKTVFMPQPNVDSAVIRLIKHENPPVKVIDEDFLFEVSRASFAQRRKTILNNLQN 245 Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + L +AGIE + R E LSI++F ++ + L + Sbjct: 246 GLVNGKQNKELILKALEEAGIEPSRRGETLSIQEFGKLADCLYPH 290 >gi|307243374|ref|ZP_07525533.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM 17678] gi|306493244|gb|EFM65238.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM 17678] Length = 292 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 145/291 (49%), Gaps = 17/291 (5%) Query: 1 MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M SHS ++ + K +GQNFL+D NI+ KI +G G +IE+G G G Sbjct: 1 MNKRLSSHSATMDLVKKHGFKFTKSLGQNFLIDDNIVDKIVAGAGIGPGDKIIEVGPGIG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---S 116 LT+ + + A ++ +E D+ PIL D + N ++I+ +D +K D + Sbjct: 61 TLTREMASR-AEALMAVEIDKNLIPILADTLGDYDN-VKIVNEDIIKADIRGLIDENLGG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P++++ANLPY I T ++ ++ + + ++ QKEV ER+ AQ +G LSV Sbjct: 119 GPVKLVANLPYYITTPIIMRFLEENIN---VTDIVVMVQKEVAERMNAQPGGKDFGALSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRR 234 + ++ + H+F P P V S VI P + K+ + AFG+RR Sbjct: 176 AVQYYCDTEIVAKVPRHLFVPQPNVDSIVIALRVRPERKYKVDDEDLYFKVVKAAFGQRR 235 Query: 235 KTLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTL S+ +G + L +AGI+ R E LS+++F ++N++ + Sbjct: 236 KTLLNSISSMGNLAKDQVKEALEEAGIDPKRRGETLSLDEFAILSNVIGNK 286 >gi|145633499|ref|ZP_01789228.1| dimethyladenosine transferase [Haemophilus influenzae 3655] gi|144985868|gb|EDJ92476.1| dimethyladenosine transferase [Haemophilus influenzae 3655] Length = 287 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 138/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQSNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLHHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|119944805|ref|YP_942485.1| dimethyladenosine transferase [Psychromonas ingrahamii 37] gi|166221692|sp|A1STS1|RSMA_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119863409|gb|ABM02886.1| dimethyladenosine transferase [Psychromonas ingrahamii 37] Length = 270 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K+H +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNDKTH--------LGHTARKRFGQNFLHDDYIIDSIVGAIAPQWEDNIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + + + VIE D+ L + ++L I Q DAL+ DF K + P+R+ Sbjct: 53 EPVA-SKVKCLNVIELDRDLAARLAEH-PVLGDKLNITQADALQFDFGKLASTERPLRVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + + QKEV R+ A N YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFEYADK---ISDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQYYC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P+PKV S V+ P+ P L+ L ++ AF +RRKT+R Sbjct: 168 RIIPVLEVPPTAFKPAPKVDSAVVRLEPYDTPPFIAKSLKCLTQVCSMAFNQRRKTIRNG 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L+ L L + GI+T RAEN+S+E++ I N + D ++ Sbjct: 228 LRDLLSIEQLQEIGIDTTKRAENISVEEYVNIANYVFDLKE 268 >gi|302873237|ref|YP_003841870.1| dimethyladenosine transferase [Clostridium cellulovorans 743B] gi|307688596|ref|ZP_07631042.1| dimethyladenosine transferase [Clostridium cellulovorans 743B] gi|302576094|gb|ADL50106.1| dimethyladenosine transferase [Clostridium cellulovorans 743B] Length = 282 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 145/281 (51%), Gaps = 14/281 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N +S K I+ Y K +GQNFL D ++L I + + VIEIG G G LT Sbjct: 1 MAN--NSTKDIVLKYNFKFTKSLGQNFLTDDSVLNDIVNGAEVNENDVVIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A+KVI IE D PIL++ + N +I DA KVDF + ++I+ Sbjct: 59 KELLG-KAKKVIAIEVDSSLIPILQEELKEFDN-FTLIHKDATKVDFNELIEGEDTVKIV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + ++ + S+T++ QKEV +RI A +S YG L++L + Sbjct: 117 ANLPYYVTTPIITDLLNKKYN---FTSITVMIQKEVADRINANPSSKEYGALTLLVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQS 240 ++ + P F P PKV STVI P + E +I +++F RRKTL Sbjct: 174 DTKIVRVVPPSCFIPQPKVDSTVIRLDKLPAPRAVVEDEELFFRIIRDSFNMRRKTLWNG 233 Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +K LG E A I+ R E LSIE+F +++N + Sbjct: 234 MKGLGLEKELLEKAFADADIDPKRRGETLSIEEFAKLSNCV 274 >gi|260589447|ref|ZP_05855360.1| dimethyladenosine transferase [Blautia hansenii DSM 20583] gi|331084461|ref|ZP_08333563.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260540192|gb|EEX20761.1| dimethyladenosine transferase [Blautia hansenii DSM 20583] gi|330401324|gb|EGG80911.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 289 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 149/295 (50%), Gaps = 22/295 (7%) Query: 1 MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + N ++ +L Y + +K GQNFL+D ++L KI ++ V+EIG G Sbjct: 1 MTAPYLGNPKRTI-EVLQKYDFVFQKKFGQNFLIDTHVLDKIISAAEITKEDFVLEIGPG 59 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115 G +TQ L AR+V+ +E D+ PIL+D + N + ++ +D LKVD +K + Sbjct: 60 IGTMTQYLAC-AAREVVAVEIDKALIPILEDTLQDYSN-VTVLNEDILKVDIKKLADEHN 117 Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 PI+++ANLPY I T ++ D ES+T++ QKEV +R+ + YG L Sbjct: 118 NGKPIKVVANLPYYITTPIIMGLFEGDVP---IESITVMVQKEVADRMQVGPGTKEYGAL 174 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 S+ + + ++ ++ P+ F P PKV S VI H P ++ + +I + +F + Sbjct: 175 SLAVQYYAEPYIVANVPPNCFMPRPKVGSAVIRLTKHAEPPVEVFDTKLMFRIIRASFNQ 234 Query: 233 RRKTLRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDN 279 RRKTL L G E + + G +R E L++E+F +TN Sbjct: 235 RRKTLANGLNNSPELSFGKEEIQRAIKACGFPEGIRGEALTLEEFAALTNEFKSK 289 >gi|331270584|ref|YP_004397076.1| dimethyladenosine transferase [Clostridium botulinum BKT015925] gi|329127134|gb|AEB77079.1| dimethyladenosine transferase [Clostridium botulinum BKT015925] Length = 281 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 13/282 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + K I+ Y K +GQNFL D +L I + S + VIEIG G G LT+ LL Sbjct: 5 TTKEIVQKYNFKFTKSLGQNFLTDQTVLDDIVDGSEVCEEDFVIEIGPGVGTLTKELLK- 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV +E D PIL++ + N ++I DALK+DF++ ++++ANLPY Sbjct: 64 KAKKVCAVELDSNLIPILQEELKEFDN-FQLIHKDALKIDFKELIGDEKSVKVVANLPYY 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T ++ + ++SLT++ QKEV ERI +Q N YG LS+L + ++ Sbjct: 123 VTTPIIARLLKE---GYKFKSLTIMIQKEVAERIASQPNCKEYGALSILVQYYCDTRIIR 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG- 245 + P F P PKV S +I E KI +++F RRKTLR ++K LG Sbjct: 180 KVPPTCFIPQPKVDSIIIRLDRLNELRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGF 239 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 E + + A I+ R E L++E+F ++ + + + +++ Sbjct: 240 VSSDNIEKVFNDADIDPRRRGETLTLEEFGKLADSVYNIREV 281 >gi|313902246|ref|ZP_07835652.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM 13965] gi|313467476|gb|EFR62984.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM 13965] Length = 320 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 136/282 (48%), Gaps = 17/282 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L+ L Y + P + +GQNFL+D N ++I + VIE+G G G LT+ L Sbjct: 22 RSELRRWLERYGVRPSRRLGQNFLVDDNWAERIVAAVEPGPDDLVIEVGPGLGALTERLA 81 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRII 122 A +V +E D++ L++ PN LE+++ D L VD ++ P+++ Sbjct: 82 QR-AGRVRAVEVDRRLAAALRERLGHLPN-LELVEGDILAVDLDRLASRQDPAGGPVKLA 139 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY I + L W+ A P WE L Q EV +R+ A S YG L+V + Sbjct: 140 SNLPYAITSPFLVRWLEA---PIRWERAVLTLQAEVVDRLVAAPGSAAYGALTVFVAYHA 196 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 + + + F+P P+V S V+ PHL P E+L + + AF +RRK L + Sbjct: 197 RVERLGTVPAGAFWPRPEVDSAVVRLWPHLRPPVAVADPEALFALVRAAFSQRRKRLANA 256 Query: 241 LK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L R+ E AGI+ R EN+ +E F R+ N L Sbjct: 257 LAAHPAVERVQAEAACRAAGIDPGARPENVDLEGFARLANQL 298 >gi|295089979|emb|CBK76086.1| dimethyladenosine transferase [Clostridium cf. saccharolyticum K10] Length = 310 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 148/289 (51%), Gaps = 19/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++ I+ Y +K GQNFL+D+++L KI ++G V+EIG G G +T Sbjct: 28 LGNPQKTI-QIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMT 86 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A++V+ +E D PIL + + + N + +I D LKVD +K +N PI Sbjct: 87 QYLAES-AKQVVAVEIDTNLIPILSETLAVYDN-VTVINQDILKVDIKKLAEEYNGGRPI 144 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +++T++ QKEV +R+ S YG LS+ Sbjct: 145 KVVANLPYYITTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 201 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI H P + + K+ + +F +RRKTL Sbjct: 202 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL 261 Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + Q G+ ++R E L++E F R++++L + Sbjct: 262 LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310 >gi|288554650|ref|YP_003426585.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4] gi|288545810|gb|ADC49693.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4] Length = 302 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 19/285 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + K IL Y KK +GQNFL+D N+L+ I +++ + IEIG G G LT+ L Sbjct: 18 PNRTKEILKKYGFNFKKSLGQNFLIDTNVLRNIVDAANLDETSGAIEIGPGIGALTEQLA 77 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 +V+ E DQ+ P+LKD S + N ++II D LK D + F + ++ Sbjct: 78 KR-VDQVVAFEIDQRLLPVLKDTLSPYDN-VQIIHSDVLKADINEAIKAHFKDGQDLMVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + + ++ Q EV ERI A+ + YG LS+ + Sbjct: 136 ANLPYYVTTPILMKLLELKLP---IRGIVVMIQAEVAERIAAKPGTKDYGSLSIAAQYYA 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 +A + + VF P P+V S V+ P ++ K+ +F RRKT+ + Sbjct: 193 EAEKVLTVPASVFVPQPRVDSAVLRLTIRQKPAVEVIDEQYFFKVFHASFANRRKTILNN 252 Query: 241 L--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L ++ E L +A I+ R E LSIE+F ++++ L Sbjct: 253 LVHNLASKSQKAEIEQALAEADIDPKRRGETLSIEEFAKLSDSLY 297 >gi|114564241|ref|YP_751755.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400] gi|122298930|sp|Q07YJ8|RSMA_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|114335534|gb|ABI72916.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400] Length = 268 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 15/281 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+NK H +K GQNFL D ++ I + + ++EIG G G LT Sbjct: 1 MSNKVH--------LGHTARKRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + + + V+E D+ L+ ++L I Q DAL+ DF + +++ Sbjct: 53 EPVADM-IDNLTVVELDRDLVKRLQYH-PVLKDKLTIHQGDALQFDFGQLQQPGKKMKVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + E++ + QKEV R++A + YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYYC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240 + + ++ P F P+PKV S VI +P P PC ++ L+ + AF RRKTLR + Sbjct: 168 QVVPVLEVPPTSFTPAPKVDSAVIRLLPFEVKPWPCKNVDVLRHLVTTAFNMRRKTLRNN 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LK L + + I+ +LR E +S+ + + N+L D +D Sbjct: 228 LKTLLSDEDFAELQIDASLRPEQISVPQYVAMANMLCDKKD 268 >gi|301024796|ref|ZP_07188434.1| dimethyladenosine transferase [Escherichia coli MS 196-1] gi|299880286|gb|EFI88497.1| dimethyladenosine transferase [Escherichia coli MS 196-1] Length = 273 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + ++ VIE D+ L+ +L I Q DA+ +F + + P+R+ Sbjct: 53 EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 SL L +L I+ +RAEN+S+ +C++ N L +N + Sbjct: 228 SLGNLFSVEVLTGMRIDPAMRAENISVAQYCQMANYLAENAPL 270 >gi|295115506|emb|CBL36353.1| dimethyladenosine transferase [butyrate-producing bacterium SM4/1] Length = 310 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 19/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++ I+ Y +K GQNFL+D+++L KI ++G V+EIG G G +T Sbjct: 28 LGNPQKTI-QIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMT 86 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A++V+ +E D PIL + + + N + +I D LKVD +K +N PI Sbjct: 87 QYLAES-AKQVVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPI 144 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +++T++ QKEV +R+ S YG LS+ Sbjct: 145 KVVANLPYYITTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 201 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI H P + + K+ + +F +RRKTL Sbjct: 202 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL 261 Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + Q G+ ++R E +++E F R++++L + Sbjct: 262 LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGEAMTLEQFARLSDLLEE 310 >gi|24378846|ref|NP_720801.1| dimethyladenosine transferase [Streptococcus mutans UA159] gi|27151562|sp|P59156|RSMA_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24376723|gb|AAN58107.1|AE014882_10 dimethyladenosine transferase [Streptococcus mutans UA159] Length = 291 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MKIADKTVT-RAILERHGFTFKKLFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ +D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ ++ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAQPSTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + + + AF RR Sbjct: 175 AVQYYMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFCVGKAAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E L+I DF R+ + L + Sbjct: 235 KTLWNNLTSHFGKSEEVKVKLEQALEAADIKPSIRGEELTITDFARLADALRE 287 >gi|251788203|ref|YP_003002924.1| dimethyladenosine transferase [Dickeya zeae Ech1591] gi|247536824|gb|ACT05445.1| dimethyladenosine transferase [Dickeya zeae Ech1591] Length = 272 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + V+E D+ L ++ ++L IIQ DA+ VDF P+R+ Sbjct: 53 IPVGER-IDSFTVVELDRDLAARL-EVHPTLRDKLTIIQQDAMTVDFAALSQQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + QKEV R+ A +S YGRL+V+ + Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPDSKAYGRLTVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P L +IT EAF +RRKTLR Sbjct: 168 CQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPTVDTRILSRITTEAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L ++ N RAEN++I +CR+ LT + Sbjct: 228 SLGNLFTPEQLTALEVDQNARAENVTIAQYCRLAEWLTAH 267 >gi|152995082|ref|YP_001339917.1| dimethyladenosine transferase [Marinomonas sp. MWYL1] gi|189028811|sp|A6VU53|RSMA_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150836006|gb|ABR69982.1| dimethyladenosine transferase [Marinomonas sp. MWYL1] Length = 266 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 7/260 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D ++++I G G ++EIG G G LT+ ++++ R + +E Sbjct: 7 HKARKRFGQNFLHDHGVIRRIVACIGPKKGQRIVEIGPGKGALTEGIISVTERMDV-VEL 65 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ PILK + P L + + DA+K DF IR++ NLPYNI T L+F+ + Sbjct: 66 DRDLIPILKVNLFRFPE-LTVHEADAMKFDFTSLTTPEQAIRVVGNLPYNISTPLIFHLL 124 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S E + + QKEV +R+ A+ YGRLSV+ + +F + P F P+ Sbjct: 125 SQAQA---IEDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYYCAVESLFIVGPESFDPA 181 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S ++ PH ++ L+ + + F +RRKTLR + K + + I+ Sbjct: 182 PKVDSAIVRMTPHKILPHPVNNIKMLEDMVRIGFQQRRKTLRNNYKGVLDNDDFSALNID 241 Query: 257 TNLRAENLSIEDFCRITNIL 276 LR E L +EDF RI N + Sbjct: 242 PTLRPERLDVEDFVRIANYV 261 >gi|323690920|ref|ZP_08105212.1| ribosomal RNA small subunit methyltransferase A [Clostridium symbiosum WAL-14673] gi|323505045|gb|EGB20815.1| ribosomal RNA small subunit methyltransferase A [Clostridium symbiosum WAL-14673] Length = 292 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 145/288 (50%), Gaps = 19/288 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N +++ I+ Y +K GQNFL+D ++L KI ++G V+EIG G G +T Sbjct: 5 LGNPKNTI-EIIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMT 63 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A +V+ +E D PIL++ + N + II +D LK+D K +N PI Sbjct: 64 QYLAE-NAGRVVAVEIDSNLIPILEETLKDYDN-ITIINEDILKLDINKLAQEYNGGRPI 121 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +++T++ QKEV +R+ + YG LS+ Sbjct: 122 KVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI H P E + K+ + +F +RRKTL Sbjct: 179 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHRTPPVEVDDRELMFKLIRASFNQRRKTL 238 Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + + G+ ++R E L+++ F + N+L+ Sbjct: 239 LNGLNNSPEINISKEKIAEAIEALGVSASVRGEALTLKQFAELANLLS 286 >gi|168494774|ref|ZP_02718917.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06] gi|225855474|ref|YP_002736986.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA] gi|254807889|sp|C1CGR5|RSMA_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|183575340|gb|EDT95868.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06] gi|225722617|gb|ACO18470.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA] Length = 290 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLMPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|291537682|emb|CBL10794.1| dimethyladenosine transferase [Roseburia intestinalis M50/1] gi|291537815|emb|CBL10926.1| dimethyladenosine transferase [Roseburia intestinalis XB6B4] Length = 290 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 19/292 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ +++ +L Y +K GQNFL+D ++L+KI E++G V+EIG G G + Sbjct: 3 TLGIPQNTI-AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V +E D PIL+D S + N + +I D LK+D K N P Sbjct: 62 TQYLCE-NAREVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236 + K ++ ++ P+ F P P V S VI H P+ E L I + +F +RRKT Sbjct: 177 QFYAKPQIVANVPPNCFMPRPNVGSAVIRLTRHEEVPVQVDDEKLMFHIIRASFNQRRKT 236 Query: 237 LRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L L L E + + + G +R E L++E F ++NI+ + Q Sbjct: 237 LANGLSNAPQVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288 >gi|167465157|ref|ZP_02330246.1| dimethyladenosine transferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381202|ref|ZP_08055205.1| dimethyladenosine 16S ribosomal RNA transferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154778|gb|EFX47049.1| dimethyladenosine 16S ribosomal RNA transferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 301 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 148/297 (49%), Gaps = 29/297 (9%) Query: 3 MNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53 MN+ SHS K I+ + KK +GQNFL+DLNIL++I ++ +E Sbjct: 1 MNSHSHSSRDVATPRKTKEIIQKHGFSFKKSLGQNFLMDLNILRQIVSAAELTSQKGALE 60 Query: 54 IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF- 112 IG G G LTQ L A KV+ +E DQ+ PIL + +P E+I D LK+D ++ Sbjct: 61 IGPGIGALTQQLAKQ-AGKVVAVEIDQRLLPILSETLEGYPA--EVIHGDVLKMDLKELL 117 Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 F S + ++ANLPY + T ++ + E++ ++ QKEV ER+ A S Sbjct: 118 RDKFQQVSAVTVVANLPYYVTTPIIMKLLENKLP---LENIVVMIQKEVAERMAAVPGSK 174 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQ 227 YG LS+ + +A ++ + VF P P V S VI P ++ Q Sbjct: 175 DYGSLSIAVQYYCEARVISIVPRTVFVPQPNVDSAVIKLALRKEPPVRVSDEAFFFEVIQ 234 Query: 228 EAFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +F +RRKT+ +L E LL +AGI+ + R E LSIE+F R++ IL Sbjct: 235 ASFAQRRKTIYNNLAARYCSKENKKEMEALLREAGIQPSRRGETLSIEEFARLSEIL 291 >gi|322387082|ref|ZP_08060693.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779] gi|321142069|gb|EFX37563.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779] Length = 290 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAKPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEIKDKLTKALDQAGLVPSVRGEALSLAEFASLADALK 286 >gi|197105173|ref|YP_002130550.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1] gi|226732606|sp|B4RBS4|RSMA_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|196478593|gb|ACG78121.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1] Length = 285 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 115/276 (41%), Positives = 163/276 (59%), Gaps = 7/276 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +L+ L + + KK GQ+FLLDLNI +KIA + DG VIE+G GPG LT+ LL Sbjct: 7 PTLREALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLE 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 GAR VI +EKD++F P+L++++ P+ L ++ DAL D E + P +++NLPY Sbjct: 67 TGAR-VIAVEKDERFRPLLQEVADAAPH-LTLVFGDALTAD-EAALSAGRPAHLVSNLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+GT LL W++ P SLTL+FQKEV +RITA YGRL+V+ A + Sbjct: 124 NVGTPLLIKWLTGPWTP---ASLTLMFQKEVADRITAAPGEDAYGRLAVIAQATADARPV 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 D+ F P PKV S V+ P P P L++L+K+T AFG+RRK LR SLK LGG Sbjct: 181 MDVPARAFTPPPKVESAVVRLEPRAARPSPERLDALQKVTAAAFGQRRKMLRSSLKALGG 240 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 E L+ AG++ RAE + + F + + ++ Sbjct: 241 EPLITAAGLDPAARAEVVPVAGFLALADAWLARREA 276 >gi|270158275|ref|ZP_06186932.1| dimethyladenosine transferase [Legionella longbeachae D-4968] gi|289163469|ref|YP_003453607.1| dimethyladenosine transferase (16S rRNA dimethylase) [Legionella longbeachae NSW150] gi|269990300|gb|EEZ96554.1| dimethyladenosine transferase [Legionella longbeachae D-4968] gi|288856642|emb|CBJ10453.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Legionella longbeachae NSW150] Length = 256 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 10/263 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL + +I+ +I + ++EIG G G LTQ LL + +E Sbjct: 2 KHSPRKRFGQNFLQNQHIINRIVHAINPQPQDNMLEIGPGLGALTQSLL-RYLNHLTAVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L ++ S ++L +I DAL +D+ +F +R++ NLPYNI T LL + Sbjct: 61 IDTDLQKYLTEL-SGIADKLHLIAADALTLDYNQF---GPNLRVVGNLPYNISTPLLIHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + E + + QKEV ER+ AQ YGRL+V+ + +FD+ P F P Sbjct: 117 LK---FTASIEDMHFMLQKEVVERMAAQPGCKAYGRLTVMLQYHCTVEHLFDVPPEAFDP 173 Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ +PH +P +E L+ + AF RRKTL +LK L + LH GI Sbjct: 174 KPKVDSAVVRLVPHRISPFEQIAVERLEYLVAHAFAMRRKTLNNNLKGLITADQLHDLGI 233 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + + R E +SI ++ ++ +++ Sbjct: 234 DGSRRPEQISISEYVQLAKFISN 256 >gi|138893714|ref|YP_001124167.1| dimethyladenosine transferase [Geobacillus thermodenitrificans NG80-2] gi|166221668|sp|A4IJB8|RSMA_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|134265227|gb|ABO65422.1| Dimethyladenosine transferase [Geobacillus thermodenitrificans NG80-2] Length = 293 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 20/282 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL+ Y KK +GQNFL+D NIL+KI +++G IEIG G G LT+ L Sbjct: 11 TKEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV+ E D + PIL D S + N + II D LK D + F S ++ANL Sbjct: 70 AKKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ + ++ QKEV +R+ A+ + YG L++ + T+A Sbjct: 129 PYYVTTPIIMKLLTERLP---IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSL-- 241 ++ + VF P P V S VI +P E ++ + +F +RRKTL +L Sbjct: 186 VVMTVPRTVFMPQPNVDSAVIRLTKRSHPPVAVEDEEVFFQVVRASFAQRRKTLLNNLLN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ E L GI+ R E L + +F ++N L Sbjct: 246 NLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 287 >gi|90409115|ref|ZP_01217237.1| KsgA [Psychromonas sp. CNPT3] gi|90309789|gb|EAS37952.1| KsgA [Psychromonas sp. CNPT3] Length = 272 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 138/283 (48%), Gaps = 15/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNNK+H +K GQNFL D I+ I + ++EIG G G LT Sbjct: 1 MNNKTH--------LGHTARKRFGQNFLHDDYIIDSIVAAISPQYDDNIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + + + VIE D+ L +L I Q DAL+ DF + +R+ Sbjct: 53 EPVAEH-VKTLHVIELDRDLADRLAKH-PTLSKKLNITQADALQFDFSLLASKEKQLRVF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + + + QKEV R+ A N YGRL+V+ + Sbjct: 111 GNLPYNISTPLMFHLFEYADK---IKDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQYYC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 K + ++ P F P+PKV S V+ P+ P L++L ++ AF +RRKT+R Sbjct: 168 KIIPVLEVPPSAFIPAPKVDSAVVRLEPYDVPPFVAKSLKALNQVCSMAFNQRRKTIRNG 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L+ L L ++ RAEN+S+E++ R+ N +TD ++ A Sbjct: 228 LRELLSVEELQLLNVDHTKRAENVSVEEYVRLANYVTDRKEKA 270 >gi|291521141|emb|CBK79434.1| dimethyladenosine transferase [Coprococcus catus GD/7] Length = 287 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 147/289 (50%), Gaps = 19/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N ++ ++ Y+ +K GQNFL+D ++L KI +G V+EIG G G +T Sbjct: 4 LSNPQRTI-EVIKKYEFCFQKKFGQNFLIDGHVLDKIIAGAGVTKDDMVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L A KV+ +E D+ PIL++ + + N +++I D L +D EK N PI Sbjct: 63 QYLAE-AAGKVVAVEIDRNLLPILQETLADYDN-VKVIHADVLSLDLEKLVQEENGGRPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ ++T++ QKEV R+ + S YG LS+ Sbjct: 121 KVVANLPYYITTPIIMALFEQHVP---LANVTVMVQKEVAARMKSGPGSKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + + ++ ++ + F P P V S VI + P + L KI + +F +RRKTL Sbjct: 178 YYAEPYIVANVPCNCFMPRPNVDSAVIRLTRYEEPPVQVKDEKMLFKIIRASFNQRRKTL 237 Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + + + +AG ++R E L++E F ++T+IL + Sbjct: 238 QNGLNNSSELNFTKDQIAAAIAEAGFSPSVRGEALTLEQFAKLTDILLN 286 >gi|168487122|ref|ZP_02711630.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00] gi|183569963|gb|EDT90491.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00] Length = 290 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|315127732|ref|YP_004069735.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913] gi|315016246|gb|ADT69584.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913] Length = 268 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 93/267 (34%), Positives = 136/267 (50%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D +I+ KI + ++EIG G G +T+ + L + V Sbjct: 6 HLGHRARKRFGQNFLFDESIIDKIVTAIDPKPQDNLVEIGPGLGAITEPVADLSGH-LTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L + P +L + Q DA+K DF +++ NLPYNI T LLF Sbjct: 65 VELDKDLAQRLIEHPFLGP-KLTVNQGDAMKFDFASLVKDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV +R+ A S +GRLSV+T + A + ++ P F Sbjct: 124 HLFE---FADHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCHAMPVVEVPPECF 180 Query: 196 FPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S VI IP ++ L + EAF +RRKTLR SL L + L Sbjct: 181 KPAPKVDSAVIRLIPKKAQQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTADELTSI 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ LRAE+LS++ F I N + DN+ Sbjct: 241 GIDITLRAESLSLQQFIDIANWIYDNK 267 >gi|121534378|ref|ZP_01666202.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1] gi|121307148|gb|EAX48066.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1] Length = 283 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 135/275 (49%), Gaps = 13/275 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + I K +GQNFL+D ++ I ++ G V+EIG G G LTQ L GA Sbjct: 15 ILKTFGIQMSKKLGQNFLVDEQVVDGIVAAAAVKPGEAVLEIGPGIGTLTQGLAEAGAN- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V +E D+Q +L + + N + II D L++D + + ++IANLPY I T Sbjct: 74 VTAVELDRQLLDVLAKTLAGYDN-VRIIHGDILRIDISREIR-AEKFKVIANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + E + + QKEV ER+ A S YG LSV + T+ +MF + P Sbjct: 132 IIMRLLEERLP---VELMVTMVQKEVAERMVAAPGSKDYGALSVAVQFYTQPEIMFVVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245 F P+P V S VI P ++ ++ + AF +RRKTL +LK G Sbjct: 189 QAFIPAPAVESAVIRCRVRSAPPVSVTDEKAFFRVVKAAFAQRRKTLANALKGGGIAQEV 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L Q GI+ R E L++ +F + N T Q Sbjct: 249 VDAMLRQTGIDGGRRGETLTLAEFAALANAWTSRQ 283 >gi|315635079|ref|ZP_07890359.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393] gi|315476200|gb|EFU66952.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393] Length = 287 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 137/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N+++ I + ++EIG G G LT+ + + Sbjct: 5 KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQANQFLVEIGPGLGALTEPVAEQ-VEHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VLELDRDLAERLRHHPFLHQ-KLNVIETDAMQFDFSSLYEQEHLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYH---HIIQDMHFMLQKEVVKRLCASPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHTTLPHPVKDLYWLNRVCSQAFNQRRKTLRNALSGLFL 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ N RAENLSI D+ R+ N L DN Sbjct: 240 PENLTALNIDLNARAENLSIADYARLANWLADN 272 >gi|149007460|ref|ZP_01831103.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74] gi|147761032|gb|EDK68001.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74] gi|332071962|gb|EGI82450.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545] Length = 290 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QA + ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQADLSPSVRGEALSLAEFAGLADALK 286 >gi|145638541|ref|ZP_01794150.1| dimethyladenosine transferase [Haemophilus influenzae PittII] gi|145272136|gb|EDK12044.1| dimethyladenosine transferase [Haemophilus influenzae PittII] Length = 287 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 138/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ + N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYAHLANWLADN 272 >gi|154482621|ref|ZP_02025069.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC 27560] gi|149736521|gb|EDM52407.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC 27560] Length = 288 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 143/291 (49%), Gaps = 18/291 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I++ Y +K GQNFL+D N+L+ I + V+EIG G G Sbjct: 1 MAYLGTPSATKEIINKYSFAFQKKFGQNFLIDSNVLESIIRGAEITKDDFVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+V+ +E D+ PIL+D S++ N +E+I D LKVD + N Sbjct: 61 MTQYLCE-AARQVVAVEIDKMLIPILEDTLSEYDN-VEVINQDVLKVDIKSLAEEKNNGK 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ + +S+T++ QKEV +R+ S YG LS+ Sbjct: 119 PIKVVANLPYYITTPIIMGLFESGVP---IDSITIMVQKEVADRMQTGPGSKDYGALSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + A ++ ++S F P P V S VI H P + + KI + +F +RRK Sbjct: 176 VQYYATAKVILNVSATCFMPRPNVDSAVIKLTRHKEPTVNVADEKLMFKIIRASFNQRRK 235 Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL LK + + G +R E L++E+F + N T+ Sbjct: 236 TLVNGLKNSPELSFSKEQIVKAIEKIGKPETIRGEALTLEEFAELANAFTE 286 >gi|307128183|ref|YP_003880214.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B] gi|306485245|gb|ADM92114.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B] Length = 290 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|301155574|emb|CBW15042.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus parainfluenzae T3T1] Length = 287 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGELYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI N RAENL+I D+ R+ N LTDN Sbjct: 240 PENLTALGIGLNARAENLAIADYARLANWLTDN 272 >gi|150014951|ref|YP_001307205.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052] gi|149901416|gb|ABR32249.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052] Length = 281 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 12/283 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ K + ++ Y K +GQNFL+D ++L I + + +IEIG G G LT Sbjct: 1 MDLKDIKTQELVKKYNFKFSKSLGQNFLVDDSVLDDIVNGAEVNNEDFIIEIGPGVGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL A+KV IE D PIL+ +H N +I DALKVDF + ++++ Sbjct: 61 AQLLM-KAKKVTSIELDNDLIPILEQELGEHKN-FSLIHKDALKVDFNELIGDEKSVKLV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + ++SLT++ QKEV ERI A+ N YG LSVL + Sbjct: 119 ANLPYYVTTPIIVKLLKG---GYNFKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240 ++ + P F P PKV S VI P + + +I + F RRKTL + Sbjct: 176 NTDIIRKVPPTCFIPRPKVESIVIRLDRLDEPRVKTKDINIMFEIVRAGFNMRRKTLWNA 235 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K L E ++GI+ RAE L++E+F +++ + D Sbjct: 236 AKTLKVDKEKLEEAFKKSGIDPKRRAETLTLEEFAALSDCIYD 278 >gi|210617032|ref|ZP_03291367.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787] gi|210149555|gb|EEA80564.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787] Length = 290 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ IL Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 5 TLGNPQNTI-EILQKYDFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118 TQ L AR+V+ +E D+ PIL+D + N + +I DD LKVD K +N + P Sbjct: 64 TQYLAC-AARQVVAVEIDKALIPILEDTLQAYDN-VTVINDDVLKVDIPKLAKEYNDNKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---IESITVMVQKEVADRMQVGPGTKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 + + ++ ++ P+ F P PKV S VI H P + + +I + +F +RRKT Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRHKEPPVQVENEKLMFQIIRASFNQRRKT 238 Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L L + G ++R E L++++F +++ + Sbjct: 239 LANGLNNSPEIHLPKEVITTAIESLGKGPSVRGEALTLQEFAVLSDRINQQ 289 >gi|288906214|ref|YP_003431436.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34] gi|325979187|ref|YP_004288903.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732940|emb|CBI14519.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34] gi|325179115|emb|CBZ49159.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 290 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N +++I +D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLHDFDN-VKVINEDILKSDLQSRIKEFANPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI +F ++ + L + Sbjct: 235 KTLWNNLTSHFGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|225374814|ref|ZP_03752035.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM 16841] gi|225213383|gb|EEG95737.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM 16841] Length = 288 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 148/288 (51%), Gaps = 19/288 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ +++ +L Y +K GQNFL+D ++L+KI E SG V+EIG G G + Sbjct: 3 TLGIPQNTI-EVLQKYNFNFQKKFGQNFLIDTHVLEKIIEESGITKDDFVLEIGPGIGTM 61 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V +E D+ PIL D S + N +E+I DD LKVD K N P Sbjct: 62 TQYLCE-NAREVAAVEIDKNLIPILADTLSAYDN-VEVINDDILKVDINKLAEEKNGGKP 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 120 IKVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQVGPGTKEYGALSLAV 176 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236 + K ++ + P+ F P P V S VI H P+ E L KI + +F +RRKT Sbjct: 177 QYYAKPEIVAIVPPNCFMPRPNVGSAVIRLTRHKEVPVQVNDEKLMFKIIRASFNQRRKT 236 Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L L + + + G+ +R E L+++ F +++NI+ Sbjct: 237 LANGLNNAPDIHLSKEVIQESIEELGVPVTIRGEALTLQQFAQLSNII 284 >gi|169834364|ref|YP_001695338.1| dimethyladenosine transferase [Streptococcus pneumoniae Hungary19A-6] gi|194397125|ref|YP_002038567.1| dimethyladenosine transferase [Streptococcus pneumoniae G54] gi|237651002|ref|ZP_04525254.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974] gi|237822560|ref|ZP_04598405.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974M2] gi|226732629|sp|B5E2H6|RSMA_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732630|sp|B1I8T7|RSMA_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|168996866|gb|ACA37478.1| dimethyladenosine transferase [Streptococcus pneumoniae Hungary19A-6] gi|194356792|gb|ACF55240.1| dimethyladenosine transferase [Streptococcus pneumoniae G54] Length = 290 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|166031341|ref|ZP_02234170.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC 27755] gi|166028746|gb|EDR47503.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC 27755] Length = 292 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 19/292 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ IL Y +K GQNFL+D ++L+KI ++G V+EIG G G + Sbjct: 5 TLGNPQNTI-EILQKYHFNFQKKFGQNFLIDTHVLEKIISAAGITKDDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KV +E D+ PIL+D S++ N + +I DD LKVD N P Sbjct: 64 TQYLAE-AAGKVAAVEIDKNLIPILEDTLSEYDNVM-VINDDVLKVDIRGLVEKENGGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 VKVVANLPYYITTPIIMGLFEGNVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKT 236 + ++ ++ P+ F P PKV S VI H P + + I + +F +RRKT Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTRHAAPPVKVDNEKWMFDIIRASFNQRRKT 238 Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L L + + G ++R E+LS+E+F ++N L + + Sbjct: 239 LANGLSNSDKIDLPKDVITEAIAKLGKGESVRGESLSLEEFAALSNDLWEKK 290 >gi|125718907|ref|YP_001036040.1| dimethyladenosine transferase [Streptococcus sanguinis SK36] gi|166221709|sp|A3CQN5|RSMA_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|125498824|gb|ABN45490.1| Dimethyladenosine transferase, putative [Streptococcus sanguinis SK36] Length = 290 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKV+ +F N Sbjct: 60 LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L +A + ++R E LS+E+F + + L Sbjct: 235 KTLWNNLTSYFGKSEETKGKLTAALERAELSPSVRGEALSLEEFACLADALKS 287 >gi|162149099|ref|YP_001603560.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] gi|209545158|ref|YP_002277387.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] gi|161787676|emb|CAP57272.1| putative dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] gi|209532835|gb|ACI52772.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl 5] Length = 275 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 108/273 (39%), Positives = 160/273 (58%), Gaps = 6/273 (2%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L+ +++ + + +K +GQ+FLLD I +IA +G L G V+E+G GPG LT+ LL Sbjct: 4 PLRDVIARHGLDARKALGQHFLLDPGITARIAALAGDLTGRHVVEVGPGPGGLTRALLDS 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A V +E D + I+ ++++ P RL +++ DA + D + +P +++ANLPYN Sbjct: 64 PAETVTAVEVDARAVAIIAELATLFPGRLHLVEADATRQDLTRL--CPAPRQVVANLPYN 121 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +GT LL W+ + WE LTL+FQ EV ERI A +S YGRL+VL W + ++ Sbjct: 122 VGTPLLVGWLRQASA---WERLTLMFQMEVAERICAAPDSAQYGRLAVLAQWTCRCALVM 178 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 I P F P PKV S V+ IPH P P +++++T AFG+RRK LR SL+ +GGE Sbjct: 179 RIPPGAFSPPPKVYSAVVSLIPHATQPDPALFRAMEQVTAAAFGQRRKMLRGSLRPIGGE 238 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LL AGI+ RAE L I +F + + Q Sbjct: 239 ALLAAAGIDGARRAETLDIAEFDLLARCHAERQ 271 >gi|187933536|ref|YP_001884370.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund 17B] gi|187721689|gb|ACD22910.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund 17B] Length = 283 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 94/276 (34%), Positives = 140/276 (50%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K ++ Y K +GQNFLLD ++L I + + + +IEIG G G LT LL Sbjct: 8 TKELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLL-QK 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+ V IE D PIL+ ++ ++ E+I +DALKVDF + ++++ANLPY + Sbjct: 67 AKMVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + + +ESLT++ QKEV ERI A+ N YG LSVL + ++ Sbjct: 126 TTPIIVKLLKEN---HKFESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRK 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS-----LK 242 +SP F P PKV S VI NP + L I + F RRKTL + L Sbjct: 183 VSPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLS 242 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + I+ RAE LSIE+F + + + + Sbjct: 243 KEDLQKAFDSCNIDPKRRAETLSIEEFAALADSIHN 278 >gi|299536734|ref|ZP_07050044.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1] gi|298727848|gb|EFI68413.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1] Length = 293 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 138/282 (48%), Gaps = 20/282 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL Y KK +GQNFL+D NIL+ I + + IE+G G G LT+ L Sbjct: 11 TQEILKKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHLA-RS 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125 A+KV+ E DQ+ P+L+D S + N + II D LK D EK P I ++ANL Sbjct: 70 AKKVVSFEIDQRLLPVLEDTLSPY-NNVSIIHSDILKADVEKVIADEMPGIDDIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L ++ ++ QKEV +RITA+ + YG LS+ + KA Sbjct: 129 PYYVTTPILLKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKAD 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S VI I H P + L +T+ +F +RRKT+ +L+ Sbjct: 186 IAMTVPKTVFMPQPNVDSAVIRLIKHEEPPVKVIDEDFLFVVTRASFVQRRKTIYNNLQS 245 Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L A IE R E LSI++F ++ + L Sbjct: 246 GLPNGKAQKDHILQALELANIEPTRRGETLSIQEFGKLADAL 287 >gi|297582384|ref|YP_003698164.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10] gi|297140841|gb|ADH97598.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10] Length = 298 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 19/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL Y KK +GQNFL++ N+L+KI E++ VIEIG G G LT+ Sbjct: 9 PTRTKAILERYGFSFKKSLGQNFLIEPNVLRKIVETAELSPDSGVIEIGPGIGALTEQSA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 + ARKV+ E DQ+ PIL D S +P+ +EI D LK D + F + ++ Sbjct: 69 KM-ARKVLAYEIDQRLLPILADTLSLYPH-VEIRHGDVLKADVHADVREVFEADQDLAVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + + ++ QKEV ERI A S +YG LS+ + Sbjct: 127 ANLPYYVTTPIMMKLLEEKLP---VRVMVMMMQKEVAERIAADPGSKNYGSLSIAVQYYA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 +A +MF + VF P P V S ++ P L+ + Q AF +RRKTL + Sbjct: 184 EAKLMFTVPKTVFVPQPNVDSAILRLTRRSEPPVDVLDEGFFFDVIQGAFTQRRKTLLNN 243 Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L ++L L I+ RAE +S+ +F RI++ + Sbjct: 244 LSVFFKDSLSKPEVQAALEALEIDPKRRAETVSMAEFARISDAFLARK 291 >gi|301169266|emb|CBW28863.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae 10810] Length = 287 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL + ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGELYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|229917418|ref|YP_002886064.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b] gi|229468847|gb|ACQ70619.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b] Length = 292 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 149/291 (51%), Gaps = 20/291 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K IL + KK +GQNFL+DLNIL KI ++ + V+EIG G G+ Sbjct: 1 MKDIATIQRTKAILERHGFSFKKSLGQNFLIDLNILSKIVGAAELSEVSGVLEIGPGIGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116 LT+ A+KV+ +E DQ+ PIL D S +P+ +++I DAL++D + Sbjct: 61 LTEQSAKR-AKKVVALEIDQRLLPILDDTMSPYPH-VKVIHGDALELDLREIVEQEFLNE 118 Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I ++ANLPY + T ++ + + + SL ++ QKEV ERI A+ + YG L Sbjct: 119 GIEDISVVANLPYYVTTPIIMRLLESGVK---FRSLVMMIQKEVAERIGAKPGTKAYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232 S+ + +A + F + +VF P+P V S VI P + + +F + Sbjct: 176 SIAIQYYAEAEVSFIVPKNVFIPAPNVDSAVITLRMRKEPAVQVKDEAFFFDVARASFAQ 235 Query: 233 RRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKT+ +L G+ LH+AGI+ R E LS+E+F R+++ + Sbjct: 236 RRKTILNNLTNYIGKEHKVELERSLHEAGIDPKRRGETLSLEEFARLSDTI 286 >gi|168484284|ref|ZP_02709236.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00] gi|172042507|gb|EDT50553.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00] gi|332199410|gb|EGJ13487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368] Length = 290 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LSIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|294084204|ref|YP_003550962.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663777|gb|ADE38878.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum IMCC1322] Length = 295 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 123/275 (44%), Positives = 169/275 (61%), Gaps = 7/275 (2%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 + + SL+ ++ + +K +GQNFL DLN+ ++IA S+ L G T IEIG GPG L Sbjct: 20 SEIDNLPSLRDLVGAMDMRARKSLGQNFLFDLNLTRRIARSAAPLTGTT-IEIGPGPGGL 78 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 T+ LL GA KV+ IEKD + +L + S RLE+ + DA+ +P RI Sbjct: 79 TRALLLEGATKVLAIEKDWRAPDVLASLLSASRGRLELTEADAMDFPIWDI--EPAPRRI 136 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPYNI T LL W+ +ES+TL+FQ+EV RITA+ YGRLSVL GW Sbjct: 137 IANLPYNIATTLLIRWLEHAA---DFESMTLMFQREVALRITAKPGDSAYGRLSVLAGWL 193 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS 240 A ++FDI P F P+PK+TS+V+ IP P PC + L+ +T+ AFG+RRK LR S Sbjct: 194 ADAEILFDIPPEAFVPAPKITSSVVQIIPLAAPRFPCRQQYLEDVTRHAFGQRRKMLRSS 253 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 LK++GGE LL AGI+ R ++L IE FC++ + Sbjct: 254 LKKIGGEALLLAAGIDPETRPQDLDIESFCKLAEL 288 >gi|225571219|ref|ZP_03780217.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM 15053] gi|225160050|gb|EEG72669.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM 15053] Length = 291 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 145/289 (50%), Gaps = 19/289 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ IL Y +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 5 TLGNPQNTI-EILQKYDFSFQKKFGQNFLIDTHVLDKIIRAADITKEDMVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KV+ +E D+ PIL D + N + +I +D LK+D + N P Sbjct: 64 TQYLAE-AAGKVVAVEIDKNLIPILTDTLHDYDN-VTVINEDVLKLDVRELAREENGGRP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T ++ D ES+T++ QKEV +R+ + YG LS+ Sbjct: 122 LKVVANLPYYITTPIIMGLFENDVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKT 236 + + ++ ++ P+ F P P+V S VI H P + + I + +F +RRKT Sbjct: 179 QYYAEPYIVANVPPNCFMPRPRVGSAVIRLTRHEKPPVEVKDEKLMFDIIRASFNQRRKT 238 Query: 237 LRQSLKR-----LGGENLLHQ---AGIETNLRAENLSIEDFCRITNILT 277 L L L E L+ G +R E+L++E+F ++N + Sbjct: 239 LANGLNNSDKLSLAKEELIEAIERLGKGPGVRGESLTLEEFAELSNYIY 287 >gi|228476972|ref|ZP_04061610.1| dimethyladenosine transferase [Streptococcus salivarius SK126] gi|228250991|gb|EEK10162.1| dimethyladenosine transferase [Streptococcus salivarius SK126] Length = 290 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D + PIL+D H N + +I +D LK D + +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILEDTLRDHDN-VNVINEDVLKADLQTRVKEFKNPE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ NS YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNSKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + L ++ + +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQPLVEVKDEDFLFRVAKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF +++ L + Sbjct: 235 KTLWNNLTNHFGKSEEVKAKLEQALEIADIKPSIRGEALSISDFAHLSDALRE 287 >gi|319775528|ref|YP_004138016.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3047] gi|329122429|ref|ZP_08251016.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116] gi|317450119|emb|CBY86333.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae F3047] gi|327473711|gb|EGF19130.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116] Length = 287 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL + ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272 >gi|55821771|ref|YP_140213.1| dimethyladenosine transferase [Streptococcus thermophilus LMG 18311] gi|62900469|sp|Q5M2L6|RSMA_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|55737756|gb|AAV61398.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus thermophilus LMG 18311] Length = 290 Score = 287 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 153/293 (52%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D++ PIL+D H N +++I +D LK D + +F N Sbjct: 60 LTEFLAE-NASEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + M F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTTKMAFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A I+ ++R E LSI DF R+++ L + Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287 >gi|85058402|ref|YP_454104.1| dimethyladenosine transferase [Sodalis glossinidius str. 'morsitans'] gi|119365845|sp|Q2NVX6|RSMA_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|84778922|dbj|BAE73699.1| dimethyladenosine transferase [Sodalis glossinidius str. 'morsitans'] Length = 272 Score = 287 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 142/280 (50%), Gaps = 16/280 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D +I+ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + ++ VIE D+ L ++L I+Q DA+ VDF P+R+ Sbjct: 53 EPVAER-VDEMTVIELDRDLAARLASH-PFLQSKLNIVQKDAMTVDFAALSAERGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ N YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTHAIRDMHFMLQKEVVNRLVDGPNGKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +P+ P P L L +T AF +RRKTLR Sbjct: 168 CQIIPVLEVPPASFRPAPKVDSAVVRLVPYATLPFPVKDLSKLATLTSLAFNQRRKTLRN 227 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL L L + GI+ LRAEN+S+E +CR+ N+L + Sbjct: 228 SLGNLFSAQQLAEQGIDATLRAENVSVELYCRLANVLAER 267 >gi|309750045|gb|ADO80029.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase [Haemophilus influenzae R2866] Length = 287 Score = 287 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQ-EAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH P P + +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNLVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L GI+ N RAENL+I D+ R+ N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADNSPA 275 >gi|242371677|ref|ZP_04817251.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W1] gi|242350626|gb|EES42227.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W1] Length = 296 Score = 287 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 146/283 (51%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI E+S + +IE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFNFKKSLGQNFLVDVNIINKIIEASQIDETTGIIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 A+KV+ E DQ+ P+L D S + N + II +D LK D K + + I ++ Sbjct: 69 KH-AKKVMSFEIDQRLIPVLNDTLSPYDN-VTIINEDILKADIGKAVNTYLDDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNASVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREEPLVDIDDEEAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + N L AGI+ R E L+I+DF ++ Sbjct: 244 YQNFFKDGKQYKSSILNWLENAGIDPKRRGETLTIQDFAKLYE 286 >gi|306832261|ref|ZP_07465415.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425700|gb|EFM28818.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 290 Score = 287 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N +++I +D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI +F ++ + L + Sbjct: 235 KTLWNNLTSHFGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|326794309|ref|YP_004312129.1| ribosomal RNA small subunit methyltransferase A [Marinomonas mediterranea MMB-1] gi|326545073|gb|ADZ90293.1| Ribosomal RNA small subunit methyltransferase A [Marinomonas mediterranea MMB-1] Length = 266 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 135/268 (50%), Gaps = 8/268 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +K GQNFL D+ I+++I +G V+EIG G G LT+ ++ + + Sbjct: 3 KAQPHKARKRFGQNFLHDMGIIRRIVACIAPKEGQRVVEIGPGKGALTEGII-SATKSMD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PILK ++P+ L + + DA+K DF + + IR++ NLPYNI T L+ Sbjct: 62 VVELDRDLIPILKVNLFKYPD-LRVHEADAMKFDFRQLATEGN-IRVVGNLPYNISTPLI 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV +R+ A+ YGRLSV+ + +F + P Sbjct: 120 FHLLEQAD---VIDDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYFCSVESLFIVGPDS 176 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ P+ L+ L+ + F +RRKTLR + K L Sbjct: 177 FDPPPKVDSAIVRMTPYTTLPVVAHDLKGLEDTVRIGFQQRRKTLRNNYKGTLTAEELES 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280 I+ LR E L + DF RI N L + + Sbjct: 237 IQIDPTLRPERLDVPDFVRIANYLHEKK 264 >gi|295094395|emb|CBK83486.1| dimethyladenosine transferase [Coprococcus sp. ART55/1] Length = 287 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 147/290 (50%), Gaps = 19/290 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N ++ + Y+ +K GQNFL+D +++ KI ++ V+EIG G G +T Sbjct: 4 LSNPQVTI-ETIKKYEFAFQKKFGQNFLIDAHVINKIISAADITKDDCVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A +V+ +E D+ PIL + +++ N + II DD LKVD K N PI Sbjct: 63 QYLAES-AGQVVAVEIDKNLLPILDETLAEYDN-VTIINDDILKVDINKIVEERNGGRPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ S+T++ QKEV +R+ + YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFEKHVP---LLSVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI + P + + ++ + +F +RRKTL Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLNRYQEPPVKVKDEQLMFRLIRASFNQRRKTL 237 Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + S + L GI N+R E+LS+ +F +++ILTD Sbjct: 238 QNGIANSGELSFTKEQIAKALESLGISANIRGESLSLAEFAALSDILTDK 287 >gi|332534338|ref|ZP_08410181.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis ANT/505] gi|332036248|gb|EGI72721.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis ANT/505] Length = 268 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 133/267 (49%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D +I+ KI + ++EIG G G +T+ + L + V Sbjct: 6 HLGHRARKRFGQNFLFDESIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVADLSGH-LTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L + P +L + Q DA+ DF +++ NLPYNI T LLF Sbjct: 65 VELDKDLAQRLIEHPFLGP-KLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV +R+ A S +GRLSV+T + A + ++ P F Sbjct: 124 HLFE---FSDHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVVEVPPECF 180 Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S VI IP ++ L + EAF +RRKTLR SL L L Sbjct: 181 KPAPKVDSAVIRLIPKKPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEELTSI 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ LRAE LS++ F I N + DN+ Sbjct: 241 GIDITLRAERLSLQQFIDIANWIYDNK 267 >gi|254491379|ref|ZP_05104558.1| dimethyladenosine transferase [Methylophaga thiooxidans DMS010] gi|224462857|gb|EEF79127.1| dimethyladenosine transferase [Methylophaga thiooxydans DMS010] Length = 266 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 8/263 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +K GQNFL D I++ I E+ G ++EIG G G LT+ LL+ + VIE D Sbjct: 8 RARKRFGQNFLHDEGIIEAIVEAISPAKGQHLVEIGPGRGALTKPLLSRC-DWLDVIELD 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P+L+ + +L I + DAL+ D+ P+R+I NLPYNI T LLF+ + Sbjct: 67 RDLIPLLRKQL--NDEQLNIHEADALRFDYRSLQKDGEPLRVIGNLPYNITTPLLFHLLG 124 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 E + + Q+EV ERI AQ + YGRLS++ + +A ++F + P F P+P Sbjct: 125 QGDC---IEDMCFMLQREVVERICAQPGNKQYGRLSIMMQHQCQAELLFTVPPEAFEPAP 181 Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S +I+ P + L+ + K+ AF +RRKT+ +LK + + Q GI+ Sbjct: 182 KVESAIIYLQPLKQRVGGEVDLDVMGKLVTTAFSQRRKTIANTLKNMITTEVFEQVGIDP 241 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 R E +S+E F +T Q Sbjct: 242 TQRPETVSVESFVALTRAYIQKQ 264 >gi|322373748|ref|ZP_08048284.1| dimethyladenosine transferase [Streptococcus sp. C150] gi|321278790|gb|EFX55859.1| dimethyladenosine transferase [Streptococcus sp. C150] Length = 290 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 155/293 (52%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D++ PIL+D H N +++I +D LK D + +F N + Sbjct: 60 LTEFLAENAA-EVMAFEIDERLVPILEDTLRDHDN-IKVINEDVLKADLQTRVKEFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFVVPHTVFVPAPNVDSAILKMTRREQPLVEVKDEDFFFRVSKISFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF R+++ L + Sbjct: 235 KTLWNNLTSHFGKSEEVKAKLEQALENANIKPSIRGEALSITDFARLSDALRE 287 >gi|22537918|ref|NP_688769.1| dimethyladenosine transferase [Streptococcus agalactiae 2603V/R] gi|76798247|ref|ZP_00780496.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21] gi|33516934|sp|Q8DXR8|RSMA_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|22534816|gb|AAN00642.1|AE014272_13 dimethyladenosine transferase [Streptococcus agalactiae 2603V/R] gi|76586400|gb|EAO62909.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21] Length = 290 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G Sbjct: 1 MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D ++ N ++++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMIQKEVADRISAMPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ AF RR Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF + + L + Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|312867557|ref|ZP_07727765.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405] gi|311096963|gb|EFQ55199.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405] Length = 291 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D + N + ++ D LKVD +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLREFDN-VTVVNQDILKVDLNQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + +++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E + AG++ ++R E LS+EDF R+ + L + Sbjct: 235 KTLWNNLTSRFGKTEEVKAKLEAGIQAAGLKPSVRGEALSLEDFARLADGLLE 287 >gi|148998515|ref|ZP_01825956.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70] gi|168576615|ref|ZP_02722481.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016] gi|307068593|ref|YP_003877559.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200] gi|147755708|gb|EDK62754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70] gi|183577641|gb|EDT98169.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016] gi|306410130|gb|ADM85557.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus pneumoniae AP200] gi|332199299|gb|EGJ13377.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317] Length = 290 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L Sbjct: 9 TKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERA 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125 A +V+ E D + PIL D N + ++ +D LKVD + F N + PI+++ANL Sbjct: 69 A-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ + A Sbjct: 127 PYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAK 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR 243 + F + VF P+P V S ++ + P + K+++ +F RRKTL +L Sbjct: 184 VAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTG 243 Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G+ L QAG+ ++R E LS+ +F + + L Sbjct: 244 YFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|126654253|ref|ZP_01726041.1| dimethyladenosine transferase [Bacillus sp. B14905] gi|126589286|gb|EAZ83444.1| dimethyladenosine transferase [Bacillus sp. B14905] Length = 294 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 91/294 (30%), Positives = 141/294 (47%), Gaps = 22/294 (7%) Query: 1 MTMNNKSHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M + + ++ IL Y KK +GQNFL+D NIL+ I + + IE+G G Sbjct: 1 MMHKDIATPIRTQEILKKYGFSFKKSLGQNFLIDPNILRNIVSHADLTENSGAIEVGPGI 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-- 116 G LT+ L A+KV+ E DQ+ P+L+D S + N + I+ D LK D K Sbjct: 61 GALTEHLA-RSAKKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEML 118 Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I ++ANLPY + T +L ++ ++ QKEV +RITA+ + YG L Sbjct: 119 GIEDIMVVANLPYYVTTPILMKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKEYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232 S+ + KA + + VF P P V S VI I + P + L +T+ +F + Sbjct: 176 SIAIQYYVKAEIAMTVPKTVFMPQPNVDSAVIRLIKYDEPPVKVINEDFLFVVTRASFVQ 235 Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 RRKT+ +L ++ L A IE R E L+I++F ++ + L Sbjct: 236 RRKTIYNNLQSGLPNGKAQKDFILEALTAASIEPTRRGETLTIQEFGKLADALY 289 >gi|146310264|ref|YP_001175338.1| dimethyladenosine transferase [Enterobacter sp. 638] gi|166987694|sp|A4W6F7|RSMA_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|145317140|gb|ABP59287.1| dimethyladenosine transferase [Enterobacter sp. 638] Length = 273 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 91/267 (34%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL D +++ I + G ++EIG G LT+ + ++ V Sbjct: 6 HQGHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DEMTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLL 134 IE D+ LK +L I Q DA+ ++F + + P+R+ NLPYNI T L+ Sbjct: 65 IELDRDLAARLK-THPFLGPKLTIYQQDAMTMNFAELSEKLGQPLRVFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ S + + + QKEV R+ A NS YGRLSV+ + + + ++ P Sbjct: 124 FHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQIIPVLEVPPTA 180 Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ +PH L L +IT EAF +RRKT+R SL ++L + Sbjct: 181 FTPAPKVESAVVRLVPHAVMPHPVKELRVLSRITTEAFNQRRKTIRNSLGNTFTVDVLTE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 GI+ +RAEN+S+E +C++ N ++DN Sbjct: 241 LGIDPAMRAENISVEQYCKLANYISDN 267 >gi|55823689|ref|YP_142130.1| dimethyladenosine transferase [Streptococcus thermophilus CNRZ1066] gi|62900468|sp|Q5LY12|RSMA_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|55739674|gb|AAV63315.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus thermophilus CNRZ1066] gi|312279113|gb|ADQ63770.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus thermophilus ND03] Length = 290 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 154/293 (52%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D++ PIL+D H N +++I +D LK D + +F N Sbjct: 60 LTEFLAE-NASEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A I+ ++R E LSI DF R+++ L + Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287 >gi|329723947|gb|EGG60472.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU144] Length = 296 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI E+S VIE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCTTGVIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 A+KV+ E DQ+ P+LKD S + N + II +D LK D K I ++ Sbjct: 69 K-NAKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKTDIAKAVATHLQDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ AQ + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMQQDVP---IDGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L AGI+ R E L+I+DF + Sbjct: 244 YQNFFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATLYE 286 >gi|152973889|ref|YP_001373406.1| dimethyladenosine transferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189028800|sp|A7GJV3|RSMA_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|152022641|gb|ABS20411.1| dimethyladenosine transferase [Bacillus cytotoxicus NVH 391-98] Length = 292 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 20/295 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ Y KK +GQNFL+D N+L +I + + IEIG G G Sbjct: 1 MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDYAEIGPKGGAIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116 LT+ L A+KV+ E DQ+ PIL + + + N + II D LK + + F Sbjct: 61 LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYDN-VTIINKDVLKANVHEVFQEQFEEG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + ++ANLPY + T +LF + ++ QKEVG+R+ A+ + YG LS+ Sbjct: 119 QDVMVVANLPYYVTTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKDYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + T+ + + VF P P V S+VI + PI + ++ + +F +RR Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSSVIRLLKRPKPIVEVIDEKFFFEVVRASFAQRR 235 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTL +L E +L + GI+ R E LSIE+F ++N L ++ Sbjct: 236 KTLMNNLSNNLNDFPKDKELLERILTEIGIDPKRRGETLSIEEFAMLSNALVPHK 290 >gi|302383692|ref|YP_003819515.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC 15264] gi|302194320|gb|ADL01892.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC 15264] Length = 270 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 160/270 (59%), Gaps = 7/270 (2%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L+ L + ++ KK GQ+FLLDLNI +KI +G +G VIE+G GPG LT+ Sbjct: 2 SDLPPLRESLEAHGLLAKKSFGQHFLLDLNITRKIVRLAGPFEGRAVIEVGPGPGGLTRA 61 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 ++ A V+++EKD +F P+L ++ + RL II+ DALKV ++ P +++N Sbjct: 62 IVESDAGPVVLVEKDPRFLPLLNELDTG-DGRLRIIEADALKVVEADL--VAGPAHVVSN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+GT LL W++ P ++TL+FQKEV ERI A YGRL+V+ +A Sbjct: 119 LPYNVGTPLLIKWLTGPWIPH---AMTLMFQKEVAERIVAAPGDDAYGRLAVIAQAVAEA 175 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ + F P PKV S V+H +PH P L+ L+ +T AFG+RRK LR SLK+ Sbjct: 176 RIVMHLPAAAFTPPPKVASAVVHLVPHADRPDREMLKRLETVTAAAFGQRRKMLRSSLKQ 235 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRIT 273 LGG L AGI+ + RAE + I F R+ Sbjct: 236 LGGGALCEAAGIDPDARAETIDIAGFLRLA 265 >gi|15901808|ref|NP_346412.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4] gi|14973492|gb|AAK76052.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4] Length = 279 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 93/279 (33%), Positives = 142/279 (50%), Gaps = 20/279 (7%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L + KK GQNFL D NIL+KI +++ D + VIEIG G G LT+ L A +V Sbjct: 2 LERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA-QV 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNI 129 + E D + PIL D N + ++ +D LKVD + F N PI+++ANLPY I Sbjct: 61 MAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLPYYI 119 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ + A + F Sbjct: 120 TTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFI 176 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247 + VF P+P V S ++ + P + K+++ +F RRKTL +L G+ Sbjct: 177 VPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGK 236 Query: 248 ---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L QAG+ ++R E LS+ +F + + L Sbjct: 237 TEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 275 >gi|16125931|ref|NP_420495.1| dimethyladenosine transferase [Caulobacter crescentus CB15] gi|27151598|sp|Q9A7N5|RSMA_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13423097|gb|AAK23663.1| dimethyladenosine transferase [Caulobacter crescentus CB15] Length = 258 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 109/257 (42%), Positives = 159/257 (61%), Gaps = 7/257 (2%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + +K GQ+FLLDLN+ +KIA + +G TV+E+G GPG LT+ LL GAR V+ IEKD Sbjct: 1 MARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETGAR-VVAIEKD 59 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +F P+L +++ RLE+++ DALKVD + P +++NLPYN+GT+LL NW++ Sbjct: 60 SRFLPLLAEVAEVAEGRLELVEGDALKVDAAQAA--GGPAHVVSNLPYNVGTQLLINWLT 117 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P S+TL+FQKEV +RI AQ YGRL+V+ +A + D+ F P P Sbjct: 118 GPFRP---LSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQTLCEARTVMDLPAKAFTPPP 174 Query: 200 KVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S V+ +P P P + +L+++T AFG+RRK LR SLK LGG +L +AG+ + Sbjct: 175 KVASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRSSLKALGGADLCERAGVSPD 234 Query: 259 LRAENLSIEDFCRITNI 275 RAE + + F + Sbjct: 235 ARAEVIDLAGFLDLARA 251 >gi|319946185|ref|ZP_08020425.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641] gi|319747567|gb|EFV99820.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641] Length = 291 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGALSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + +++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREEPAVTVKDEDFFFTVSKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E + AG++ ++R E LS+EDF R+ + L D Sbjct: 235 KTLWNNLTSRFGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLD 287 >gi|171779142|ref|ZP_02920113.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282198|gb|EDT47625.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 290 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N +++I +D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ F RR Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKIGFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI +F ++ + L + Sbjct: 235 KTLWNNLTSHFGKADEIKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|218132712|ref|ZP_03461516.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC 43243] gi|217992438|gb|EEC58441.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC 43243] Length = 296 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 90/294 (30%), Positives = 143/294 (48%), Gaps = 24/294 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N +++L I+ Y +K GQNFL+D N+++KI +G V+EIG G G +TQ+ Sbjct: 9 NPTNTL-EIIKKYGFGFQKRFGQNFLIDGNVVEKIVREAGITKDDFVLEIGPGIGTMTQI 67 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRI 121 L AR+V +E D+ PIL + + + N + +I +D LKVD K N PI++ Sbjct: 68 LCE-NAREVAAVEIDKNLIPILAETLAPYDN-VSVINEDILKVDVRKLAEEKNDGRPIKV 125 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + ES+T++ QKEV +R+ + YG LS+ + Sbjct: 126 VANLPYYITTPIIMGLFESHVP---LESITIMVQKEVAQRMQVGPGTKDYGALSLAVQFY 182 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQ 239 A ++ + F P P V S VI + H + P+ E ++ + AF +RRKTL Sbjct: 183 ADAQIVLKVPASCFMPRPNVDSAVIKLVRHEDAPVKVKDEQFMFRVIRAAFNQRRKTLAN 242 Query: 240 SLKRLGGEN-------------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 SL N L G+ +R E L++ F + + L + Sbjct: 243 SLANSSELNGSGHACTREDVTTALEAMGLPAGIRGEALTLAQFGELADRLIEMH 296 >gi|262281831|ref|ZP_06059600.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA] gi|262262285|gb|EEY80982.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA] Length = 290 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+T+ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVTKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L +A + N+R E L + F R+++ L Sbjct: 235 KTLWNNLTSYFGKSEEVKTKLERALEKADLAANVRGEALDLAAFARLSDALKS 287 >gi|322390323|ref|ZP_08063851.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 903] gi|321142971|gb|EFX38421.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + +++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E + AG++ ++R E LS+EDF R+ + L + Sbjct: 235 KTLWNNLTSRFGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLE 287 >gi|15612620|ref|NP_240923.1| dimethyladenosine transferase [Bacillus halodurans C-125] gi|27151607|sp|Q9KGK4|RSMA_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|10172669|dbj|BAB03776.1| dimethyladenosine transferase [Bacillus halodurans C-125] Length = 289 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 19/284 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL+ + KK +GQNFL+D N+L+ I + + IEIG G G LT+ L Sbjct: 11 TKEILAKHGFTFKKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLA-RQ 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANL 125 A++V+ E DQ+ P+L++ + + N + +I +D LK D ++ F + ++ANL Sbjct: 70 AKRVVAFEIDQRLIPVLRETLAPYEN-VTVINEDVLKADVKQVIATTFEEGQDLMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L + A + ++ Q EV +RI A+ + YG LS+ + A Sbjct: 129 PYYVTTPILMKLLEAKLP---VRGIVVMIQAEVADRIAAKPGTKEYGSLSIAAQYYATAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S V+ P E L I + +F RRKT+ +L Sbjct: 186 LAVKVPKTVFVPQPNVDSAVLRLTIREKPPVTVADEEWLFAIVRASFANRRKTILNNLIH 245 Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++ L +AGI+ + R E L+IE+F ++ L Sbjct: 246 NLVGKERKDKAVQALAEAGIDPSRRGETLTIEEFANLSEQLQKR 289 >gi|30018312|ref|NP_829943.1| dimethyladenosine transferase [Bacillus cereus ATCC 14579] gi|75759603|ref|ZP_00739689.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218232555|ref|YP_002364891.1| dimethyladenosine transferase [Bacillus cereus B4264] gi|218895177|ref|YP_002443588.1| dimethyladenosine transferase [Bacillus cereus G9842] gi|296500873|ref|YP_003662573.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171] gi|33516920|sp|Q81JA5|RSMA_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729753|sp|B7ISV1|RSMA_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729754|sp|B7HIK9|RSMA_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29893852|gb|AAP07144.1| Dimethyladenosine transferase [Bacillus cereus ATCC 14579] gi|74492894|gb|EAO56024.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218160512|gb|ACK60504.1| dimethyladenosine transferase [Bacillus cereus B4264] gi|218541640|gb|ACK94034.1| dimethyladenosine transferase [Bacillus cereus G9842] gi|296321925|gb|ADH04853.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171] gi|326937833|gb|AEA13729.1| dimethyladenosine transferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 292 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 142/295 (48%), Gaps = 20/295 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ Y KK +GQNFL+D N+L +I + + IEIG G G Sbjct: 1 MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116 LT+ L A+KV+ E DQ+ PIL + + + N + +I D LK D + FN Sbjct: 61 LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + ++ANLPY I T +LF + ++ QKEVG+R+ A+ + YG LS+ Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + T+ + + VF P P V S +I + P+ + ++ + +F +RR Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTL +L + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290 >gi|51894384|ref|YP_077075.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM 14863] gi|62900510|sp|Q67JB9|RSMA_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51858073|dbj|BAD42231.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM 14863] Length = 285 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 15/286 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N +LK +++ Y + P+ +GQNFL+D +L I ++G V+EIG G G Sbjct: 1 MDLANPG-ALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116 LTQ L A +V+ +E D+ +L D + + +E+I DA ++D K Sbjct: 60 LTQRLAA-KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLHKLLGERLAPG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ANLPY I T L+ + + + ++ QKEV +R+ + S YG LSV Sbjct: 119 QKAKVVANLPYYITTPLVMRLLEEELP---LSHVVVMVQKEVADRMVSPPGSKAYGALSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRK 235 + T+ ++ +S F P P+V S V+ P+ E+ ++ + AFG+RRK Sbjct: 176 AVQYYTEPRIVLRVSRASFMPQPEVDSAVVSLRYRERPPVDAPPEAFFRVVRAAFGQRRK 235 Query: 236 TLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276 +L +L LG E L AGI+ R E+LS+E+F + L Sbjct: 236 SLVNALTSLGVEKAAVHAALEAAGIDPGRRGESLSLEEFAAVARTL 281 >gi|88859121|ref|ZP_01133762.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2] gi|88819347|gb|EAR29161.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2] Length = 268 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 136/267 (50%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H KK GQNFL D I+ KI + ++EIG G G +T+ + + A + V Sbjct: 6 HLGHRAKKRFGQNFLNDAMIIDKIVTAIDPKPEDCLVEIGPGLGAITEPVTDI-AGHLTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L P +L + Q DA++ DF + +++ NLPYNI T LLF Sbjct: 65 VELDKDLVERLIHHPFLGP-KLTVHQGDAMRFDFSTLVEENKKLKVFGNLPYNISTPLLF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + E + + QKEV +R+ A + YGRLSV+T + A + ++ P F Sbjct: 124 HLFDYAEH---IEHMHFMLQKEVVKRMVASPDCKAYGRLSVMTQYYCHAIPVIEVPPECF 180 Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ IP C + L + EAF +RRKT+R SL L + + + Sbjct: 181 KPAPKVDSAVVRLIPKKPEQLRAKCTKILNTVCLEAFNQRRKTIRNSLSNLLTTDDMIEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 G+++ RAENLS++ + I N L DN+ Sbjct: 241 GLDSKARAENLSLDQYIDIANWLYDNK 267 >gi|226309677|ref|YP_002769571.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599] gi|226092625|dbj|BAH41067.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599] Length = 297 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 19/282 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL Y KK +GQNFL+D NIL I + IEIG G G LT+ L Sbjct: 12 PTRTKEILEKYGFAFKKSLGQNFLIDTNILHNIVSEADLTKEKGAIEIGPGIGALTEQL- 70 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122 A+KV+ IE DQ+ PIL+D S + N +E++ D L +D +K + ++ Sbjct: 71 GRAAKKVMAIEIDQRLLPILQDTLSPYEN-IEVVHGDVLGLDLKKLIEEKMTGVEKLSVV 129 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + E++ ++ QKEV ERI A+ + YG LSV + Sbjct: 130 ANLPYYVTTPILMKLLEERLP---LENIVVMIQKEVAERIAAKPGTKDYGSLSVAAQFYA 186 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + VF P P V S VI P + ++ + +F +RRKTL + Sbjct: 187 DTEVAMIVPASVFIPRPNVDSAVIRLKVRDRPPVEVDDQDVFFRVVRCSFAQRRKTLLNN 246 Query: 241 L-KRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITN 274 L L + +L GI+ R E LS+++F R+ N Sbjct: 247 LMNGLFPKTQKDEVIQMLTDIGIDPTRRGETLSLDEFARLAN 288 >gi|25011861|ref|NP_736256.1| dimethyladenosine transferase [Streptococcus agalactiae NEM316] gi|77414160|ref|ZP_00790325.1| dimethyladenosine transferase [Streptococcus agalactiae 515] gi|33516935|sp|Q8E3D7|RSMA_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|24413402|emb|CAD47481.1| Unknown [Streptococcus agalactiae NEM316] gi|77159783|gb|EAO70929.1| dimethyladenosine transferase [Streptococcus agalactiae 515] Length = 290 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G Sbjct: 1 MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D ++ N ++++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ Q+EV +RI+A N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIEGKIP---FAEFVVMMQREVADRISAMPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ AF RR Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF + + L + Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|27469208|ref|NP_765845.1| dimethyladenosine transferase [Staphylococcus epidermidis ATCC 12228] gi|57866030|ref|YP_187727.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A] gi|251809801|ref|ZP_04824274.1| dimethyladenosine transferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875423|ref|ZP_06284295.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135] gi|293366135|ref|ZP_06612822.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W2(grey)] gi|33516932|sp|Q8CQU5|RSMA_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900459|sp|Q5HRR2|RSMA_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27316757|gb|AAO05932.1|AE016751_227 dimethyladenosine transferase [Staphylococcus epidermidis ATCC 12228] gi|57636688|gb|AAW53476.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A] gi|251806669|gb|EES59326.1| dimethyladenosine transferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295780|gb|EFA88302.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135] gi|291319729|gb|EFE60088.1| dimethyladenosine transferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329733035|gb|EGG69374.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU028] gi|329737895|gb|EGG74123.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU045] Length = 296 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI E+S VIE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCTTGVIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRII 122 A+KV+ E DQ+ P+LKD S + N + II +D LK D K + I ++ Sbjct: 69 K-NAKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVDTHLQDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ AQ + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMQQDVP---IDGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L AGI+ R E L+I+DF + Sbjct: 244 YQNFFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATLYE 286 >gi|313905501|ref|ZP_07838865.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6] gi|313469685|gb|EFR65023.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6] Length = 299 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 149/289 (51%), Gaps = 19/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N ++++ IL Y +K GQNFL+D ++L+KI ++ + V+EIG G G LT Sbjct: 14 LGNPANTI-EILQKYGFRFQKKFGQNFLIDPHVLEKIVRAADISEDDCVMEIGPGIGTLT 72 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L AR+V +E D+ PIL + + + + + +I +D LKVD ++ N P+ Sbjct: 73 QYLA-RYAREVFAVEIDKNLIPILTEDTLKDWDNVTVINEDCLKVDMKQLVEEHNGGKPV 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T +L + +ES+T++ QKEV +R+ A S YG LS+ Sbjct: 132 KVVANLPYYITTPILMELLEKHVP---FESITVMVQKEVADRMQAGPGSKDYGALSLAVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESL-KKITQEAFGKRRKT 236 + T +M ++ P+ F P P V S VI N + E L ++ + +F +RRKT Sbjct: 189 YYTVPEIMANVPPNCFIPRPNVGSAVIRLKGRTEENRVQVQDEHLMFRLIRASFAQRRKT 248 Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L L+ E ++ G+ +R E L++E F ++ + Sbjct: 249 LMNGLRNSQELDFSKEEIEKVIQDCGLPAAVRGEALTLEQFAQLADHFA 297 >gi|306834382|ref|ZP_07467499.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338] gi|304423555|gb|EFM26704.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338] Length = 290 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N +++I +D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+I+ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKIVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFVVPRTVFIPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI +F ++ + L + Sbjct: 235 KTLWNNLTSHFGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287 >gi|319745733|gb|EFV98030.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813] Length = 290 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G Sbjct: 1 MHIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VQVVNKDILKADLQTQIQAFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAMPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ AF RR Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF + + L + Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|254429167|ref|ZP_05042874.1| dimethyladenosine transferase [Alcanivorax sp. DG881] gi|196195336|gb|EDX90295.1| dimethyladenosine transferase [Alcanivorax sp. DG881] Length = 270 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 8/265 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ+FL D N++ ++ + G G T++EIG G G LT LL + V+E Sbjct: 4 HRTRKRFGQHFLHDRNLVDRMIRTLGLQAGDTLVEIGPGRGALTYPLLEEIPH-LHVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ +L+ P+RL I + DAL+ DF P+R+I NLPYNI T L+F+ + Sbjct: 63 DRDLIALLRQ--ENTPDRLSIHESDALRFDFRALKPADKPLRVIGNLPYNISTPLIFHLL 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +T + QKEV ER+TA + +GRLS++ + +A +F + P F P Sbjct: 121 AQADA---ISDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPP 177 Query: 199 PKVTSTVIHFIPHLNPI-PCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S V+ IPH +P P E L+K+ +AF +RRK +R LK GI+ Sbjct: 178 PRVDSAVVRLIPHASPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFEALGID 237 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 LR + LS+ D+ + NI N D Sbjct: 238 AGLRPDQLSVADYVALANISRPNAD 262 >gi|206972590|ref|ZP_03233533.1| dimethyladenosine transferase [Bacillus cereus AH1134] gi|206732492|gb|EDZ49671.1| dimethyladenosine transferase [Bacillus cereus AH1134] Length = 292 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 90/295 (30%), Positives = 143/295 (48%), Gaps = 20/295 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ Y KK +GQNFL+D N+L +I + + IEIG G G Sbjct: 1 MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116 LT+ L A+KV+ E DQ+ PIL + + + N + +I D LK D + FN Sbjct: 61 LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + ++ANLPY I T +LF + ++ QKEVG+R+ A+ + YG LS+ Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + T+ + + VF P P V ST+I + P+ + ++ + +F +RR Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSTIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTL +L + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290 >gi|253681083|ref|ZP_04861886.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873] gi|253562932|gb|EES92378.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873] Length = 281 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 13/282 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + K I+ Y K +GQNFL D +L I S + VIEIG G G LT+ LL Sbjct: 5 TTKEIVQKYNFKFTKSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELLK- 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A+KV +E D PIL++ + N ++I DALK++F++ ++++ANLPY Sbjct: 64 KAKKVCAVELDSNLIPILQEELKEF-NNFQLIHKDALKINFKELIGDEKSVKVVANLPYY 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T ++ + ++SLT++ QKEV ERI ++ N YG LS+L + T++ Sbjct: 123 VTTPIIARLLKE---GYNFKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTTIIR 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG- 245 + P F P PKV S +I P E KI +++F RRKTLR ++K LG Sbjct: 180 KVPPTCFIPQPKVDSIIIRLDRLNEPRVKVQDKELFFKIVRQSFNMRRKTLRNAIKSLGF 239 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 E + + A I+ R E L++E+F ++ + + +++ Sbjct: 240 ISSDKIEKVFNDANIDPRRRGETLTLEEFGKLADSVYKIKEV 281 >gi|303241033|ref|ZP_07327543.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2] gi|302591458|gb|EFL61196.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2] Length = 279 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 17/277 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K ++ Y I K +GQNFL D ++ +I +++ V+EIG G G++T L + Sbjct: 5 TKELIKKYGIKLTKSLGQNFLTDDKVVTRIVDTAEITYDDLVMEIGPGIGSMTGELASR- 63 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127 A KV+ +E D+ P LK+ + N LEII +D +KV+ + + +++ ANLPY Sbjct: 64 AGKVVAVEIDKYLIPALKENLKEFSN-LEIINEDIMKVNVKDITVNGQNMRVKVAANLPY 122 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + + E + + QKEV +R+ A+ YG LSV + + + Sbjct: 123 YITTPIIMKLLEEEN---DIELMVFMVQKEVAQRMVAKPGGKDYGALSVAVQYYAQPEKV 179 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 FD+ PH F P P+V ST++ + P + K+ + +FG+RRKTL +L G Sbjct: 180 FDVPPHCFVPQPEVDSTIVKLKKNKMPPVDLKDKDMFFKVVKASFGQRRKTLLNALTNFG 239 Query: 246 G--------ENLLHQAGIETNLRAENLSIEDFCRITN 274 G +L + I N R E LSIE F ++N Sbjct: 240 GFNKSKEEIREILIKLNINENARGETLSIEQFASLSN 276 >gi|332140204|ref|YP_004425942.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550226|gb|AEA96944.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 275 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 11/272 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ KI + + ++EIG G G LT + + V Sbjct: 5 HLGHTARKRFGQNFLHDDYVIGKIVAAIAPKNEQNLVEIGPGLGALTDPVCEE-VDALTV 63 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGT 131 IE D+ L+ + +L +I+ DA+ +DF +R+ NLPYNI T Sbjct: 64 IELDRDLAKRLRHH-PFNGEKLTVIEQDAMTMDFGALSKEMPLKDKKLRVFGNLPYNIST 122 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F+ E + + QKEV R+ A S +YGRLSV+ + + ++ Sbjct: 123 PLMFHLFDHAHC---IEDMHFMLQKEVVNRLAAGPGSKNYGRLSVMAQYYCHVIPVLNVP 179 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P PKV S V+ +PH +P + +L+++ +AF +RRKT+R SLK E Sbjct: 180 PGAFKPPPKVDSAVVKLVPHQSPPVDVVSVSTLERVCAQAFNQRRKTIRNSLKDSLSEEE 239 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + + GI+ RAE LS+ DF I N ++ + Sbjct: 240 IRELGIDPTCRAEVLSLNDFATIANAVSAKES 271 >gi|18311499|ref|NP_563433.1| dimethyladenosine transferase [Clostridium perfringens str. 13] gi|110799025|ref|YP_697204.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124] gi|110801894|ref|YP_699773.1| dimethyladenosine transferase [Clostridium perfringens SM101] gi|168213441|ref|ZP_02639066.1| dimethyladenosine transferase [Clostridium perfringens CPE str. F4969] gi|169343266|ref|ZP_02864277.1| dimethyladenosine transferase [Clostridium perfringens C str. JGS1495] gi|182624345|ref|ZP_02952130.1| dimethyladenosine transferase [Clostridium perfringens D str. JGS1721] gi|27151580|sp|Q8XHG8|RSMA_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600857|sp|Q0TMD6|RSMA_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600859|sp|Q0SQ34|RSMA_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|18146183|dbj|BAB82223.1| dimethyladenosine transferase [Clostridium perfringens str. 13] gi|110673672|gb|ABG82659.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124] gi|110682395|gb|ABG85765.1| dimethyladenosine transferase [Clostridium perfringens SM101] gi|169298564|gb|EDS80645.1| dimethyladenosine transferase [Clostridium perfringens C str. JGS1495] gi|170715038|gb|EDT27220.1| dimethyladenosine transferase [Clostridium perfringens CPE str. F4969] gi|177910563|gb|EDT72936.1| dimethyladenosine transferase [Clostridium perfringens D str. JGS1721] Length = 285 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 13/284 (4%) Query: 1 MTMNN-KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N K K ++ Y K +GQNFL+D ++ + I + + VIEIG G G Sbjct: 1 MDINEIKDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 LT LL A++V+ IE D PIL +P + ++I +DALKVDF + + Sbjct: 61 TLTVQLLKR-AKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGDEKSV 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY + T ++ N + ++SLT++ QKEV ER+ A+ N YG LS+L Sbjct: 119 KLVANLPYYVTTPIIVNLLKG---GYNFKSLTIMIQKEVAERMNAEPNCKDYGALSILVQ 175 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + ++ + P F P PKV S VI P + +I + AF RRKTL Sbjct: 176 YYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSVKVKNEKLFFEIVRHAFNMRRKTL 235 Query: 238 RQS-----LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L + E +AGI+ R E LS+ +F +++ + Sbjct: 236 WNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279 >gi|322834455|ref|YP_004214482.1| dimethyladenosine transferase [Rahnella sp. Y9602] gi|321169656|gb|ADW75355.1| dimethyladenosine transferase [Rahnella sp. Y9602] Length = 275 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 145/265 (54%), Gaps = 8/265 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ I + + G V+EIG G LT+ + + + V Sbjct: 6 HQGHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLAALTEPVASRL-DSMTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134 IE D+ L++ + + +L +IQ DA+K++F + P+R+ NLPYNI T L+ Sbjct: 65 IELDRDLATRLEN-NPKFQGKLRVIQSDAMKINFGELSEELGQPLRVFGNLPYNISTPLM 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ T+ + + + QKEV R+ A NS YGRL+V+ + + ++ P Sbjct: 124 FHLF---TYTNAIKDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEVPPES 180 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S V+ +PH P P + L ++T +AF +RRKT+R SL L + + Sbjct: 181 FTPAPKVESAVVRLVPHEVIPYPVPDIRILSRLTTDAFNQRRKTVRNSLGHLFTPEQMTE 240 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 G++ ++RAEN+S+E FC++ N L+ Sbjct: 241 LGLDLSMRAENISVEQFCKLANWLS 265 >gi|323483571|ref|ZP_08088956.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum WAL-14163] gi|323403127|gb|EGA95440.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum WAL-14163] Length = 292 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 145/288 (50%), Gaps = 19/288 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N +++ I+ Y +K GQNFL+D ++L KI ++G V+EIG G G +T Sbjct: 5 LGNPKNTI-EIIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMT 63 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A +V+ +E D PIL++ + N + +I +D LK+D K +N PI Sbjct: 64 QYLAE-NAGRVVAVEIDSNLIPILEETLKDYDN-ITVINEDILKLDINKLAQEYNGGRPI 121 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +++T++ QKEV +R+ + YG LS+ Sbjct: 122 KVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI H P E + K+ + +F +RRKTL Sbjct: 179 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHRTPPVEVDDRELMFKLIRASFNQRRKTL 238 Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + + G+ ++R E L+++ F + N+L+ Sbjct: 239 LNGLNNSPEINISKEKIAEAIEALGVSASVRGEALALKQFAELANLLS 286 >gi|304413708|ref|ZP_07395152.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Candidatus Regiella insecticola LSR1] gi|304283799|gb|EFL92193.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Candidatus Regiella insecticola LSR1] Length = 280 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 13/280 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M NKSH SH I ++ GQNFL D +I+ I + + G ++EIG+G G LT Sbjct: 9 MKNKSHK-----SHQGHIARQRFGQNFLKDPHIIDSIVSAIHPIPGEAMVEIGSGLGVLT 63 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + + + VIE D+ L + +L I Q DA+ DF P+R+ Sbjct: 64 KPVADR-IDHMTVIELDRDLAARLAEH-PTLKEKLTIYQQDAMNFDFSLLAEGAGQPLRV 121 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ + + + QKEV R+ A ++ YGRL+V+ + Sbjct: 122 FGNLPYNISTPLMFHLF---NYTKIIRDMHFMLQKEVVNRLVAGPHNKAYGRLTVMAQYY 178 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQ 239 + + ++ P F P+PKV S V+ +PH P P L++IT +AF +RRK +R Sbjct: 179 CQIIPIVEVPPEAFTPAPKVDSAVVRLVPHQQLPNPVSDTRILRQITTQAFNQRRKIIRN 238 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL +L L + I+ N+RAENLS+ +CR+ N L+D Sbjct: 239 SLGKLFTAEQLTELDIDPNVRAENLSVAQYCRLANWLSDQ 278 >gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540] gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540] Length = 297 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 153/297 (51%), Gaps = 22/297 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 +T + ++IL+ Y + KK GQNFL D IL++I E++ D VIEIG G G Sbjct: 4 LTQIGSRKTTRSILNEYGLHAKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGA 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NI 115 LT+ L A +V+ +E DQ P+L+ + + N + +I D L+ + + + Sbjct: 64 LTEKLA-QAAGQVVAVEIDQDLIPVLEKTLAAYDN-VTVINQDILRANLPELIQQQFTDP 121 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 + PI+++ANLPY I + +L N +++ P W S+T++ QKEV +R+TA+ + YG L+ Sbjct: 122 TKPIKVVANLPYYITSPILMNLLAS---PVEWSSITVMMQKEVAQRLTAKPGTKQYGALT 178 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGK 232 + ++ A + F++S H F P+P V S ++ P+ P + L + F Sbjct: 179 LAIEYQMDAEVAFNVSRHSFIPAPNVDSAIVVLKQRQQPLTTKPFDKQKLMGFIRGCFAH 238 Query: 233 RRKTLRQSLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RRK+L +L+ + G++ L + I R E L++ F + N L + Sbjct: 239 RRKSLWNNLQSVIGKDANIKAKMTKVLEENEISPQFRPEKLTLAQFINLLNALHQEK 295 >gi|251778936|ref|ZP_04821856.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083251|gb|EES49141.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 283 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 141/276 (51%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K ++ Y K +GQNFLLD ++L I + + + +IEIG G G LT LL Sbjct: 8 TKELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLL-QK 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL+ ++ ++ E+I +DALKVDF + ++++ANLPY + Sbjct: 67 AKRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + + +ESLT++ QKEV ERI A+ N YG LSVL + ++ Sbjct: 126 TTPIIVKLLKEN---HKFESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRK 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS-----LK 242 +SP F P PKV S VI NP + L I + F RRKTL + L Sbjct: 183 VSPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLS 242 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + I+ RAE LSIE+F + + + D Sbjct: 243 KEDLQKAFDYCNIDPKRRAETLSIEEFAVLADSIHD 278 >gi|71279824|ref|YP_271174.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H] gi|119365017|sp|Q47VJ8|RSMA_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71145564|gb|AAZ26037.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H] Length = 301 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 148/283 (52%), Gaps = 15/283 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H KK GQNFL + ++ I ++ G +IEIG G G LT Sbjct: 1 MNDK--------KHLGHQAKKRFGQNFLHNDAVISDIVDAINPEPGENLIEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + ++ A K+ V+E D+ L+ L I + DALK DF + P+RI Sbjct: 53 EPVIER-AGKLSVVELDRDLAHRLRHH-PFLAKDLTIYETDALKFDFSELATEEQPLRIF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + T+ + + + QKEV ER+ A + YGRLS++T ++ Sbjct: 111 GNLPYNISTPLIFHLL---TFKDKVKDMHFMLQKEVVERMAAGPHCKAYGRLSIMTQYQC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240 + + +I P F P+PKV S ++ IPH + +L + AF +RRKT+R + Sbjct: 168 QVFPVMEIGPEAFKPAPKVDSAIVRLIPHAHIENPVKDINALNTVCLAAFNQRRKTIRNT 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 K+L E L + I+ NLR ENLS++++ ++ + + DN A Sbjct: 228 FKKLITEAQLAELNIDANLRPENLSLDEYKKLADFIVDNPPEA 270 >gi|30260231|ref|NP_842608.1| dimethyladenosine transferase [Bacillus anthracis str. Ames] gi|42779120|ref|NP_976367.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987] gi|47525294|ref|YP_016643.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47569890|ref|ZP_00240557.1| dimethyladenosine transferase [Bacillus cereus G9241] gi|49183075|ref|YP_026327.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne] gi|49477600|ref|YP_034395.1| dimethyladenosine transferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145175|ref|YP_081654.1| dimethyladenosine transferase [Bacillus cereus E33L] gi|65317501|ref|ZP_00390460.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Bacillus anthracis str. A2012] gi|165872549|ref|ZP_02217181.1| dimethyladenosine transferase [Bacillus anthracis str. A0488] gi|167635072|ref|ZP_02393389.1| dimethyladenosine transferase [Bacillus anthracis str. A0442] gi|167641541|ref|ZP_02399789.1| dimethyladenosine transferase [Bacillus anthracis str. A0193] gi|170688890|ref|ZP_02880092.1| dimethyladenosine transferase [Bacillus anthracis str. A0465] gi|170707547|ref|ZP_02898000.1| dimethyladenosine transferase [Bacillus anthracis str. A0389] gi|177655321|ref|ZP_02936850.1| dimethyladenosine transferase [Bacillus anthracis str. A0174] gi|190568974|ref|ZP_03021875.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I] gi|196036349|ref|ZP_03103746.1| dimethyladenosine transferase [Bacillus cereus W] gi|196041767|ref|ZP_03109057.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99] gi|206977937|ref|ZP_03238824.1| dimethyladenosine transferase [Bacillus cereus H3081.97] gi|217957617|ref|YP_002336159.1| dimethyladenosine transferase [Bacillus cereus AH187] gi|218901242|ref|YP_002449076.1| dimethyladenosine transferase [Bacillus cereus AH820] gi|222093811|ref|YP_002527860.1| dimethyladenosine transferase [Bacillus cereus Q1] gi|227812714|ref|YP_002812723.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684] gi|229601390|ref|YP_002864692.1| dimethyladenosine transferase [Bacillus anthracis str. A0248] gi|254682332|ref|ZP_05146193.1| dimethyladenosine transferase [Bacillus anthracis str. CNEVA-9066] gi|254724182|ref|ZP_05185967.1| dimethyladenosine transferase [Bacillus anthracis str. A1055] gi|254733577|ref|ZP_05191298.1| dimethyladenosine transferase [Bacillus anthracis str. Western North America USA6153] gi|254744655|ref|ZP_05202334.1| dimethyladenosine transferase [Bacillus anthracis str. Kruger B] gi|254756360|ref|ZP_05208389.1| dimethyladenosine transferase [Bacillus anthracis str. Vollum] gi|254762416|ref|ZP_05214258.1| dimethyladenosine transferase [Bacillus anthracis str. Australia 94] gi|300119136|ref|ZP_07056837.1| dimethyladenosine transferase [Bacillus cereus SJ1] gi|301051777|ref|YP_003789988.1| dimethyladenosine transferase [Bacillus anthracis CI] gi|33516921|sp|Q81W00|RSMA_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900500|sp|Q63HJ1|RSMA_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900530|sp|Q6HPX5|RSMA_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900550|sp|Q73FG7|RSMA_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729752|sp|B7JK47|RSMA_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729755|sp|B7HPV2|RSMA_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807857|sp|C3P9I6|RSMA_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807858|sp|C3LJ13|RSMA_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807860|sp|B9IZC4|RSMA_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|30253552|gb|AAP24094.1| dimethyladenosine transferase [Bacillus anthracis str. Ames] gi|42735035|gb|AAS38975.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987] gi|47500442|gb|AAT29118.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47553424|gb|EAL11808.1| dimethyladenosine transferase [Bacillus cereus G9241] gi|49177002|gb|AAT52378.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne] gi|49329156|gb|AAT59802.1| dimethyladenosine transferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978644|gb|AAU20194.1| dimethyladenosine transferase [Bacillus cereus E33L] gi|164711677|gb|EDR17222.1| dimethyladenosine transferase [Bacillus anthracis str. A0488] gi|167510526|gb|EDR85924.1| dimethyladenosine transferase [Bacillus anthracis str. A0193] gi|167529546|gb|EDR92296.1| dimethyladenosine transferase [Bacillus anthracis str. A0442] gi|170127543|gb|EDS96417.1| dimethyladenosine transferase [Bacillus anthracis str. A0389] gi|170667114|gb|EDT17875.1| dimethyladenosine transferase [Bacillus anthracis str. A0465] gi|172080162|gb|EDT65255.1| dimethyladenosine transferase [Bacillus anthracis str. A0174] gi|190559898|gb|EDV13882.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I] gi|195990979|gb|EDX54950.1| dimethyladenosine transferase [Bacillus cereus W] gi|196027387|gb|EDX66004.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99] gi|206743843|gb|EDZ55263.1| dimethyladenosine transferase [Bacillus cereus H3081.97] gi|217065788|gb|ACJ80038.1| dimethyladenosine transferase [Bacillus cereus AH187] gi|218538262|gb|ACK90660.1| dimethyladenosine transferase [Bacillus cereus AH820] gi|221237858|gb|ACM10568.1| dimethyladenosine transferase [Bacillus cereus Q1] gi|227006542|gb|ACP16285.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684] gi|229265798|gb|ACQ47435.1| dimethyladenosine transferase [Bacillus anthracis str. A0248] gi|298723458|gb|EFI64199.1| dimethyladenosine transferase [Bacillus cereus SJ1] gi|300373946|gb|ADK02850.1| dimethyladenosine transferase [Bacillus cereus biovar anthracis str. CI] gi|324324031|gb|ADY19291.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 292 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 20/295 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ Y KK +GQNFL+D N+L +I + + IEIG G G Sbjct: 1 MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116 LT+ L A+KV+ E DQ+ PIL + + + N + +I D LK D + F Sbjct: 61 LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + ++ANLPY I T +LF + ++ QKEVG+R+ A+ + YG LS+ Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + T+ + + VF P P V S +I + P+ + ++ + +F +RR Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTL +L + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290 >gi|329117503|ref|ZP_08246220.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020] gi|326907908|gb|EGE54822.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020] Length = 290 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL H+ KK GQNFL D NIL+KI +++ + VIEIG G G LT+ + Sbjct: 9 TRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFIAENA 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A +V+ E D + PILKD N ++++ D LK D + F N PI+++ANL Sbjct: 69 A-EVMAFEIDDRLIPILKDTLRDFDN-VQLVNQDILKADLQTQIKAFKNPELPIKVVANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ + A Sbjct: 127 PYYITTPILMHLIDSKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSIAVQYYMDAK 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKR 243 + F + VF P+P V S ++ P+ + L ++++ +F RRKTL +L Sbjct: 184 VAFIVPRTVFVPAPNVDSAILKMTRRDQPLVAVQDEDFLFRVSKASFVHRRKTLWNNLTS 243 Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ L + I ++R E LSIE F ++ + L + Sbjct: 244 HFGKTEEIKANLTKALEISEISPSIRGEALSIEQFGKLADALKE 287 >gi|163938049|ref|YP_001642933.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4] gi|226729756|sp|A9VN54|RSMA_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|163860246|gb|ABY41305.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4] Length = 292 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 20/291 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ Y KK +GQNFL+D N+L +I + + IEIG G G Sbjct: 1 MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116 LT+ L A+KV+ E DQ+ PIL + + + N + +I D LK D + F Sbjct: 61 LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + ++ANLPY I T +LF + ++ QKEVG+R+ A+ + YG LS+ Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + T+ + + VF P P V S +I + P+ + ++ + +F +RR Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 KTL +L + +L + GI+ R E LSIE+F ++N L Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286 >gi|77409014|ref|ZP_00785733.1| dimethyladenosine transferase [Streptococcus agalactiae COH1] gi|77172355|gb|EAO75505.1| dimethyladenosine transferase [Streptococcus agalactiae COH1] Length = 290 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G Sbjct: 1 MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D ++ N ++++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMIQKEVADRISAMPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ AF RR Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVCRDQPVVSVQDEDFFFRVSKVAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF + + L + Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|330686078|gb|EGG97700.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU121] Length = 296 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI ++S + +IE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 A+KV+ E D + P+LKD + + N + II +D LK D + I ++ Sbjct: 69 KH-AKKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVTEHLKDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ + YG LS++T + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + E + L +A I+ R E LSI+DF ++ L + ++ Sbjct: 244 YQNFFKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQLYKELNNFPEL 294 >gi|239825621|ref|YP_002948245.1| dimethyladenosine transferase [Geobacillus sp. WCH70] gi|259494250|sp|C5D363|RSMA_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|239805914|gb|ACS22979.1| dimethyladenosine transferase [Geobacillus sp. WCH70] Length = 291 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 22/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL Y KK +GQNFL+D NIL+KI + + D IEIG G G LT+ L Sbjct: 11 TREILEKYGFSFKKSLGQNFLIDTNILRKIVDFAELSDETGAIEIGPGIGALTEQLARR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANL 125 A+KV+ E DQ+ PIL+D S + N + II D LK D + F + I ++ANL Sbjct: 70 AKKVVAFEIDQRLLPILEDTLSPYGN-IRIIHQDVLKADIHRVISEEFTGMTDIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ + ++ QKEV +R+ A+ + YG LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLTDRLP---IRGMVVMLQKEVADRLAAKPGTKDYGSLSIAIQYYTEAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR----- 238 + + VF P P V S VI I P + ++ + +F +RRKT+ Sbjct: 186 TVMTVPRTVFIPQPNVDSAVIRLIKRKQPPVKVEDEAFFFQVVRASFAQRRKTILNNLVN 245 Query: 239 -----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +++K E +L + I+ R E L++E+F ++N L Sbjct: 246 NLPNGKAMKE-QIERVLTETDIDPRRRGETLTMEEFAALSNALQ 288 >gi|169825672|ref|YP_001695830.1| dimethyladenosine transferase [Lysinibacillus sphaericus C3-41] gi|226732594|sp|B1HS82|RSMA_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|168990160|gb|ACA37700.1| Dimethyladenosine transferase [Lysinibacillus sphaericus C3-41] Length = 293 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL Y KK +GQNFL+D NIL+ I + + IE+G G G LT+ L Sbjct: 11 TQEILKKYGFSFKKSLGQNFLIDPNILRNIVSHAKLTENSGAIEVGPGIGALTEHLA-RS 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125 A+KV+ E DQ+ P+L+D S + N + I+ D LK D K P I ++ANL Sbjct: 70 AKKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEMPGIEDIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T +L ++ ++ QKEV +RITA+ + YG LS+ + KA Sbjct: 129 PYYVTTPILMKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKAD 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI I H P + L +T+ +F +RRKT+ +L Sbjct: 186 IAMTVPKTVFMPQPNVDSAVIRLIKHDEPPVKVINEDFLFVVTRASFVQRRKTIYNNLQA 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ L A IE R E L+I++F ++ + L Sbjct: 246 GLPNGKTQKDFILEALAAANIEPTRRGETLTIQEFGKLADALY 288 >gi|319891446|ref|YP_004148321.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius HKU10-03] gi|317161142|gb|ADV04685.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius HKU10-03] gi|323465384|gb|ADX77537.1| dimethyladenosine transferase [Staphylococcus pseudintermedius ED99] Length = 296 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 20/293 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L+ Y KK +GQNFL+D+NI+ +I ++SG VIEIG G G+LT+ L Sbjct: 9 PSRTRALLNQYGFNFKKSLGQNFLIDVNIINRIIDASGIDHMTGVIEIGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRII 122 A+ V+ E DQ+ P+L D S + N + +I +D LK + + I ++ Sbjct: 69 K-NAQHVLAFEIDQRLIPVLDDTLSPY-NNVTVINEDILKANVAEAIQQHLSHCEKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L + D + ++ QKEVGER+ AQ + YG LS++ + T Sbjct: 127 ANLPYYITTPILLTLLEQDLN---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + +PI + K+T+ AF +RRKT+ + Sbjct: 184 ETSRVLTVPKTVFMPPPNVDSIVVKLMKRESPIVDVDNPNAFFKMTKGAFSQRRKTIYNN 243 Query: 241 LKRLG---------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 + L L +A I+ R E LSI+++ R+ L + ++++ Sbjct: 244 YQNLFENGKEQKETIMQWLERADIDPKRRGETLSIQEYARLYAELENFPNLSL 296 >gi|239637479|ref|ZP_04678453.1| dimethyladenosine transferase [Staphylococcus warneri L37603] gi|239596924|gb|EEQ79447.1| dimethyladenosine transferase [Staphylococcus warneri L37603] Length = 296 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI ++S + +IE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 A+KV+ E D + P+LKD + + N + II +D LK D + I ++ Sbjct: 69 KH-AKKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVNEHLKDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ + YG LS++T + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + E + L +A I+ R E LSI+DF ++ L + ++ Sbjct: 244 YQNFFKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQLYKELNNFPEL 294 >gi|119504979|ref|ZP_01627056.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2080] gi|119459265|gb|EAW40363.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2080] Length = 279 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 P+K GQNFL D +++ IA + + ++EIG G G LT+ L+T G ++ IE Sbjct: 21 GHAPRKRFGQNFLQDDGVIQAIARAISAHKDDHIVEIGPGQGALTESLVTSGC-QLDAIE 79 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L S HP R + DALK D++ S P+R++ NLPYNI T L+F Sbjct: 80 LDRDLTTGLLAAFSIHP-RFTLHTGDALKFDYKALRADSRPLRVVGNLPYNISTPLIFKL 138 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q+EV R+ AQ S +GRL V+ + + +FD+ P FFP Sbjct: 139 LENTA---IIGDMHFMLQREVVTRLAAQPGSKDWGRLGVMAQFYCDVSHLFDVPPEAFFP 195 Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ IPH P C + L + Q AF +RRKTLR + K + + + Sbjct: 196 PPKVQSAIVRLIPHATPPYPDCDVVRLGRTVQMAFAQRRKTLRNNFKGVLNDEAFASVDV 255 Query: 256 ETNLRAENLSIEDFCRITNI 275 RAE L +E F ++ + Sbjct: 256 TPTARAETLRLEQFVALSRL 275 >gi|70727517|ref|YP_254433.1| dimethyladenosine transferase [Staphylococcus haemolyticus JCSC1435] gi|119365848|sp|Q4L3F0|RSMA_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68448243|dbj|BAE05827.1| ksgA [Staphylococcus haemolyticus JCSC1435] Length = 296 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K +L + KK +GQNFL+D+NI+ KI ++S D +IE+G G G+LT+ L Sbjct: 9 PSRTKALLDQFGFNFKKSLGQNFLVDVNIIHKIIDASEIDDNTGIIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 A+KV+ E DQ+ P+LK+ + + N + II +D LK D K + N I ++ Sbjct: 69 KR-AKKVMSFEIDQRLIPVLKETLAPYDN-VTIINEDILKADIGKAVKTYLNDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ AQ + YG LS++T + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVTQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRETPLVSVDDEETFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L Q GI+ R E LSI+DF R+ Sbjct: 244 YQNFFKDGKKHKESILKWLEQTGIDPKRRGETLSIQDFARLYE 286 >gi|73663572|ref|YP_302353.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|119365849|sp|Q49V02|RSMA_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72496087|dbj|BAE19408.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 296 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 146/291 (50%), Gaps = 20/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K +L+ Y KK +GQNFL+D+NI+ I ++S + +IE+G G G+LT+ L Sbjct: 9 PTRTKALLNQYGFNFKKSLGQNFLIDVNIIHNIIDASDIDEQTGIIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 A+KV+ E DQ+ P+LKD + N + +I +D LK D + I ++ Sbjct: 69 KS-AKKVMAFEIDQRLIPVLKDTMRPYDN-VTVINEDILKADIAHYITEHLTDCEKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + + ++ QKEVGER+ AQ + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMQQKLP---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + PI K+T+ AF +RRKT+ + Sbjct: 184 ETSKVLTVPKSVFLPPPNVDSIVVKLMKRPTPIVDIDDENKFFKMTKAAFSQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + L L AGI+ R E LSI++F + N L + ++ Sbjct: 244 YQSLFVNGKVNKEKILEWLEAAGIDPRRRGETLSIKEFANLYNELQNFTEL 294 >gi|28377358|ref|NP_784250.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1] gi|33516929|sp|Q88Z93|RSMA_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28270190|emb|CAD63089.1| dimethyladenosine transferase (putative) [Lactobacillus plantarum WCFS1] Length = 296 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 147/291 (50%), Gaps = 21/291 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 + + N + + + I+ Y + KK +GQNFL D N+L I ++ VIEIG G G Sbjct: 6 LDIANPART-RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGA 64 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A V+ E D + PIL + + + N + ++ D LK D + + Sbjct: 65 LTEYLA-RAAHHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNE 122 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P++++ANLPY I T +L N ++ D +E++ ++ QKEV +R+ A+ + YG L++ Sbjct: 123 RPLKLVANLPYYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTI 179 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRR 234 +R A M + VF PSP V S ++ P +P + K+ + F RR Sbjct: 180 AVQYRMAAEMAMVVPRTVFVPSPNVDSAIVKLTALPLRTHVPFDEAAFFKVVKAGFAHRR 239 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 K L +L+ L G+ L A I+ +RAE L++++F +T+ L Sbjct: 240 KNLWNNLQSLFGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290 >gi|332072170|gb|EGI82656.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301] Length = 290 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LSIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G+ L QAG+ ++R E LS+ +F + + L Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286 >gi|225026666|ref|ZP_03715858.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353] gi|224956036|gb|EEG37245.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353] Length = 293 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 19/288 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 + N ++ +L Y +K GQNFL+D ++L KI ++ V+EIG G G + Sbjct: 10 NLGNPQETI-AVLQRYGFNFQKKYGQNFLIDTHVLDKIIGAAEIGKDDFVLEIGPGIGTM 68 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V+ +E D + PIL+D ++ N + ++ +D LKVD K N P Sbjct: 69 TQYLAE-AAREVVAVEIDTKLIPILEDTLKEYDN-VTVLNEDILKVDIRKIAEEKNGGKP 126 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 127 IKVVANLPYYITTPIIMGLFESEVP---LDSITVMVQKEVADRMQVGPGTKDYGALSLAV 183 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236 + + ++ ++ P+ F P P V S VI + P+ + KI + +F +RRKT Sbjct: 184 QYYAEPYIVANVPPNCFIPRPAVGSAVIRLTRYQEKPVKVNDSAFMFKIIRASFNQRRKT 243 Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ L + L + G+ +R E LS+E+F ++++IL Sbjct: 244 LQNGLYNSSELRIPKEKTVAALEEMGLTPTIRGEKLSLEEFAKLSDIL 291 >gi|260582745|ref|ZP_05850532.1| dimethyladenosine transferase [Haemophilus influenzae NT127] gi|260094195|gb|EEW78096.1| dimethyladenosine transferase [Haemophilus influenzae NT127] Length = 287 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 138/273 (50%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D ++++ I + ++EIG G G LT+ + L + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VEHLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IP+ P P L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPNKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L GI+ N RAENL+I D+ + N L DN Sbjct: 240 PENLTALGIDLNARAENLAIADYAHLANWLADN 272 >gi|118475813|ref|YP_892964.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al Hakam] gi|196047365|ref|ZP_03114578.1| dimethyladenosine transferase [Bacillus cereus 03BB108] gi|225862093|ref|YP_002747471.1| dimethyladenosine transferase [Bacillus cereus 03BB102] gi|166221644|sp|A0R8B4|RSMA_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807859|sp|C1ESX0|RSMA_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118415038|gb|ABK83457.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al Hakam] gi|196021767|gb|EDX60461.1| dimethyladenosine transferase [Bacillus cereus 03BB108] gi|225788520|gb|ACO28737.1| dimethyladenosine transferase [Bacillus cereus 03BB102] Length = 292 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 20/295 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ Y KK +GQNFL+D N+L +I + + IEIG G G Sbjct: 1 MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116 LT+ L A+KV+ E DQ+ PIL + + + N + +I D LK D + F Sbjct: 61 LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + ++ANLPY I T +LF + ++ QKEVG+R+ A+ + YG LS+ Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 + T+ + + VF P P V S +I + P+ + ++ + +F +RR Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRR 235 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 KTL +L + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290 >gi|242241578|ref|ZP_04796023.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144] gi|242234959|gb|EES37270.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144] gi|319399650|gb|EFV87904.1| dimethyladenosine transferase [Staphylococcus epidermidis FRI909] Length = 296 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI E+S VIE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCATGVIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 A+KV+ E DQ+ P+LKD S + N + II +D LK D K I ++ Sbjct: 69 K-NAKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVATHLQDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMQQDVP---IDGFVVMMQKEVGERLNAHVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L AGI+ R E L+I+DF + Sbjct: 244 YQNFFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATLYE 286 >gi|167748007|ref|ZP_02420134.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662] gi|167652584|gb|EDR96713.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662] Length = 286 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 18/290 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + I+ Y +K GQNFL+D ++L+KI +++ + V+EIG G G Sbjct: 1 MEKLSSPKKTIEIIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITEDDFVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+V+ +E D PILK+ + + N +E++ +D LKVD K N Sbjct: 61 MTQYLSEH-AREVMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGR 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ + SLT++ QKEV +R+ A + YG LS+ Sbjct: 119 PIKVVANLPYYITTPIIMGLFEKNVP---MNSLTVMVQKEVAQRMQAGPGTKDYGALSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI + + P+ E L I + +F +RRK Sbjct: 176 VQFYAEPYIVANVPPNCFMPRPKVGSAVIRLTRYKDMPVKVKNEQLMFSIIRASFNQRRK 235 Query: 236 TLRQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL+ + + L + G+ +R E LS+E F R++++L Sbjct: 236 TLQNGINNSSTLHFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLLE 285 >gi|300853385|ref|YP_003778369.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528] gi|300433500|gb|ADK13267.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528] Length = 280 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 14/283 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+ S + ++ Y K +GQNFL+D +L I S+ +IEIG G G LT Sbjct: 1 MNDLSTA--DVVKKYGFKFSKSLGQNFLIDNTVLDDIVNSADISKEDFIIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A KV IE D PILK+ N E+I DALK+DF K + ++I+ Sbjct: 59 RELLK-KAGKVCAIELDSDLIPILKEELKDFKN-FELIHKDALKIDFNKIIDDEKNVKIV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ ++ + +++LT++ QKEVGERI+++ N YG LS+L + Sbjct: 117 ANLPYYVTTPIITRLLNENYN---FKTLTIMIQKEVGERISSEPNCKQYGALSILVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 ++ +SP F P PKV S VI P + K+ + +F RRKTL + Sbjct: 174 DVEVIRKVSPLSFIPRPKVESIVIKLTKLDEPRVKVKDKKLFFKVVRCSFNMRRKTLWNA 233 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +K L E +A I+ R E LSIE+F R+++ + D Sbjct: 234 VKTLKVPKEDMEAAFKKAEIDEKRRGETLSIEEFGRLSDCIYD 276 >gi|296875726|ref|ZP_06899791.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 15912] gi|296433296|gb|EFH19078.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC 15912] Length = 291 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + +++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREKPAVTVKDEDFFFSVSKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E + AG++ ++R E LS+EDF R+ + L + Sbjct: 235 KTLWNNLTSRFGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLE 287 >gi|292670425|ref|ZP_06603851.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541] gi|292647835|gb|EFF65807.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541] Length = 292 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 14/278 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL+ +++ K +GQNFL+D+ +++ I E++ G TV+EIG G G LTQ L G Sbjct: 14 TRHILNAFRLRASKRLGQNFLIDVGVVRGIVEAAELAPGDTVLEIGPGIGTLTQGLAETG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY 127 AR V+ +E D++ +L + + N + I+ D LK++ + ++ ANLPY Sbjct: 74 AR-VVAVEIDKKLPRVLAETLKGYDN-VTIVPGDILKLNIPEILGLKEGERFKVAANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + E L + QKEV R+TA+ S YG LS+ + T+ ++ Sbjct: 132 YITTPIIMTLLEQRLP---IERLVTMVQKEVAVRMTARPGSKDYGALSIAVQYFTEPRIV 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P+P+VTS V+ P P + ++ + AFG+RRK L +L G Sbjct: 189 MDVPPRAFMPAPEVTSAVVACRVRETPAAAPADEKLFFRLIRAAFGQRRKMLLNALTGAG 248 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L AGI N R E LS+ DF R+++ + D Sbjct: 249 LTKEMSRAGLSAAGIAENTRGEQLSLADFARLSDAVGD 286 >gi|251794062|ref|YP_003008793.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2] gi|247541688|gb|ACS98706.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2] Length = 298 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 18/283 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K I++ Y KK +GQNFL+D NIL KI ++G +EIG G G LTQ L Sbjct: 14 PKRTKEIIAKYGFSFKKSLGQNFLIDQNILHKIVSAAGLDKTKGALEIGPGIGALTQHLA 73 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122 A V IE D + PIL DI + ++++ D LK+D +K F + + ++ Sbjct: 74 A-AAGTVTAIEIDNRLIPILGDILAG-EEHVKVVHGDVLKLDLKKLFEERFADVAGVSVV 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + E++ ++ QKEV ER+ A+ YG LSV + Sbjct: 132 ANLPYYVTTPILMKLLEERLP---LENIVVMIQKEVAERMAAKPGGKEYGSLSVAVQYYC 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 + ++ + VF P P V S VI P + +I Q +F +RRKTL + Sbjct: 189 EPQLVCIVPHTVFIPQPNVDSAVIKLAVREKPPVEVEDEAHFFRIVQASFAQRRKTLANN 248 Query: 241 LKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276 L G+ LL I+ R E LS+++F RI+ Sbjct: 249 LTAFVGKERREEMTQLLISCEIDPVRRGETLSLDEFARISRAF 291 >gi|221135222|ref|ZP_03561525.1| dimethyladenosine transferase [Glaciecola sp. HTCC2999] Length = 267 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ +I + + ++EIG G G LT+ + + + V Sbjct: 5 HLGHKARKRFGQNFLNDDYVIDQIVSAIAPNNDDIMVEIGPGLGALTEPVCDV-VEHLNV 63 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L++ ++L +I+ DAL+ DF + P+++ NLPYNI T L+F Sbjct: 64 VELDRDLAKRLREH-PFMSSKLNVIEADALQFDFTELAKQG-PLKVFGNLPYNISTPLMF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + T+ + + + QKEV R+ A+ +YGRLSV+ + + ++ P F Sbjct: 122 HLF---TFTNQIKDMHFMLQKEVVNRLAARPGHKNYGRLSVMAQYYCTVVPVIEVPPEAF 178 Query: 196 FPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ IPH P L++L+K+T AF +RRKT+R SLK + ++L Sbjct: 179 TPPPKVDSAVVRLIPHQTPPVEVNELKALEKVTALAFNQRRKTIRNSLKSVIDADVLTSI 238 Query: 254 GIETNLRAENLSIEDFCRITN 274 GI+ RAE LS+ F I N Sbjct: 239 GIDPVWRAEGLSLAQFALIAN 259 >gi|225869784|ref|YP_002745731.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047] gi|254807885|sp|C0M8P2|RSMA_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225699188|emb|CAW92442.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047] Length = 290 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 152/292 (52%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K+IL Y KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D++ PIL D N ++++ D LK D + +F N Sbjct: 60 LTEFLAERAA-EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ F RR Sbjct: 175 AVQYYMTAKIAFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G E L AGI+ ++R E LSI+DF R+ + L Sbjct: 235 KTLWNNLVSHFGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADALK 286 >gi|116628487|ref|YP_821106.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9] gi|122266918|sp|Q03IR2|RSMA_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116101764|gb|ABJ66910.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9] Length = 290 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI ++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D++ PIL+D H N +++I +D LK D + +F N Sbjct: 60 LTEFLAE-NASEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + + F + VF P+P V S ++ P+ + ++++ +F RR Sbjct: 175 AVQYYMTTKVAFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A I+ ++R E LSI DF R+++ L + Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287 >gi|117925614|ref|YP_866231.1| dimethyladenosine transferase [Magnetococcus sp. MC-1] gi|171460784|sp|A0LA32|RSMA_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117609370|gb|ABK44825.1| dimethyladenosine transferase [Magnetococcus sp. MC-1] Length = 279 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 95/271 (35%), Positives = 148/271 (54%), Gaps = 10/271 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K +L + + P K GQNFL+D ++ +I +G G V+EIG G G+LT LL Sbjct: 7 IKLLLEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLL-QK 65 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYN 128 A V +EKD++ P+L+ + + L ++++DAL VD+ + P+++ ANLPYN Sbjct: 66 AGAVTAVEKDRKLLPLLR-VEAAGVGALTLVEEDALLVDYTALAQQLGGPLKLAANLPYN 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+ + + +E + L+FQKEV +R+ A+ S YG L+V + F Sbjct: 125 ISTPLMVHLLDHHAA---FECMALMFQKEVAQRLAAEPGSKAYGALTVQCALWAEIRHGF 181 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 D+ P F P+PKVTS V+H P ++ + AF +RRKTLR +LK + Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRVAVEDERHFVRVVKAAFAQRRKTLRNTLKTICP 241 Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRITNI 275 + L QAGI+ LRAE L++ F ++ N Sbjct: 242 DPNRWLEQAGIDGALRAEVLTLAQFAQLANT 272 >gi|163791033|ref|ZP_02185454.1| dimethyladenosine transferase [Carnobacterium sp. AT7] gi|159873678|gb|EDP67761.1| dimethyladenosine transferase [Carnobacterium sp. AT7] Length = 297 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 92/296 (31%), Positives = 144/296 (48%), Gaps = 25/296 (8%) Query: 3 MNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N+ K I+ Y KK +GQNF++D NIL I +S VIE+G G Sbjct: 1 MTNRKDIATPSRTKEIMEKYGFSVKKSLGQNFIVDPNILSNIVAASDIDKNTNVIEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFF 113 G LT+ L +++VI E D + P+L D S + N + ++ D LKV+ + Sbjct: 61 IGALTEHLA-RASKEVIAFEIDNRLLPVLADTLSPYDN-ISVVHSDVLKVNLQESLPEMI 118 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 ++ P+ ++ANLPY I T ++ +++ P + LT++ QKEV ERITA S YG Sbjct: 119 DLDEPLVVVANLPYYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGS 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFG 231 LS+ + +A + F + VF P P V S +I P +S + + AF Sbjct: 176 LSIAIQYYMEAEVAFIVPKTVFIPQPNVDSAIIKLTRRATPSVTVNNEKSFFALVRSAFV 235 Query: 232 KRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +RRKTL +L G+ L A I+ R E LS+ +F +++ + + Sbjct: 236 QRRKTLWNNLLIRYGKEDETREKLIQALEAANIDPKRRGETLSLAEFALLSDAIDE 291 >gi|320547549|ref|ZP_08041834.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812] gi|320447624|gb|EFW88382.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812] Length = 290 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + +L + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L Sbjct: 9 TRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAENA 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A +V+ E D + PIL D N +++I +D LK D ++F N PI+++ANL Sbjct: 69 A-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + I + + ++ QKEV +RI+A+ N+ YG LS+ + A Sbjct: 127 PYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAK 183 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 + F + VF P+P V S ++ P+ + ++ + +F RRKTL +L Sbjct: 184 VAFIVPRTVFVPAPNVDSAILKMTRREEPLVKVKDEDFFFRVAKISFVHRRKTLWNNLIS 243 Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G E L A I+ ++R E LSI DF ++ + L + Sbjct: 244 HFGKAEETKAKLEKALEIAEIKPSIRGEALSIADFAKLADALKE 287 >gi|81429267|ref|YP_396268.1| dimethyladenosine transferase [Lactobacillus sakei subsp. sakei 23K] gi|119365029|sp|Q38V22|RSMA_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78610910|emb|CAI55962.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus sakei subsp. sakei 23K] Length = 297 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 20/294 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K IL Y KK +GQNFL ++ ILK+I E+ VIEIG G G+ Sbjct: 1 MEDIANPERTKKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ + A +V+ E D + P+LKD + + N + ++ D L+ D K F+ Sbjct: 61 LTEQIA-RKAHQVLSFEIDDRLIPVLKDTLNHYHN-VTVLNQDILEADLPTLIAKHFDGQ 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++I+ANLPY I T ++ + + A + + L+ QKEV ERI A S YG LS+ Sbjct: 119 HNLKIVANLPYYITTPIMLHLLEAGLP---IDRMVLMMQKEVAERIDAAPGSKAYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 ++ + F + F P P V S ++ F+ P+ + ++ + AF +RR Sbjct: 176 AVQLHSEVKLAFIVPKTAFVPQPNVDSAIVEFVGRQEPLVTVQNQQLFDQLVRGAFAQRR 235 Query: 235 KTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTL +L+ G+ L QA I + RAE LSI+ F ++++ L + Sbjct: 236 KTLWNNLQNQFGKQEEVKAGLVAALDQADIAPSTRAEQLSIQQFAQLSDCLNEQ 289 >gi|160894460|ref|ZP_02075236.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50] gi|156863771|gb|EDO57202.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50] Length = 287 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 151/289 (52%), Gaps = 19/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N +++TI Y+ +K GQNFL+D +++ KI ++ V+EIG G G +T Sbjct: 4 LSNPQVTIQTI-KKYEFAFQKKFGQNFLIDDHVITKIINAAEITKDDLVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L A KVI +E D+ PIL + +++ N + II +D LK+D + N PI Sbjct: 63 QYLAES-AGKVIAVEIDKNLIPILGETLAEYDN-VTIINEDILKLDINRLVEEENDGKPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ S YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---LQSITVMVQKEVADRMQVGPGSKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL 237 + K + ++ P+ F P P V S VI + P + + K+ + +F +RRKTL Sbjct: 178 YYAKPYIAANVPPNCFIPRPGVGSAVIRLTRYEEPPVMVKDESLMFKLIRASFNQRRKTL 237 Query: 238 RQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + E L + G+ N+R E+L++ +F ++++ +++ Sbjct: 238 QNGIANSPELPYSKAQVEKALEKMGLAANVRGESLTLAEFAKLSDTISE 286 >gi|332994415|gb|AEF04470.1| dimethyladenosine transferase [Alteromonas sp. SN2] Length = 275 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 136/268 (50%), Gaps = 11/268 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D ++ +I + ++EIG G G LT + + V Sbjct: 5 HLGHTARKRFGQNFLHDDYVIGQIVSAINPQHEQNLVEIGPGLGALTDPVCDE-VEALTV 63 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGT 131 IE D+ L++ + ++L +I+ DA+ +DF + +R+ NLPYNI T Sbjct: 64 IELDRDLAKRLREH-PFNGDKLTVIEQDAMTMDFTELAKTMPVKDKGLRVFGNLPYNIST 122 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F+ S + + + QKEV R+ A S YGRLSV+ + K + ++ Sbjct: 123 PLMFHLFSHAAC---VDDMHFMLQKEVVNRLAAGHGSKSYGRLSVMAQYYCKVMPVLNVP 179 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P PKV S V+ IPH P + +L+++ +AF +RRKT+R SLK E Sbjct: 180 PGAFKPPPKVDSAVVRLIPHKTPPVDVVSVATLERVCAQAFNQRRKTIRNSLKESLTETQ 239 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 + + GI +RAE LS++DF I N ++ Sbjct: 240 ISELGINPTVRAEVLSLQDFATIANAVS 267 >gi|76787342|ref|YP_330398.1| dimethyladenosine transferase [Streptococcus agalactiae A909] gi|77406268|ref|ZP_00783335.1| dimethyladenosine transferase [Streptococcus agalactiae H36B] gi|119365850|sp|Q3JZA5|RSMA_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|76562399|gb|ABA44983.1| dimethyladenosine transferase [Streptococcus agalactiae A909] gi|77175121|gb|EAO77923.1| dimethyladenosine transferase [Streptococcus agalactiae H36B] Length = 290 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G Sbjct: 1 MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D ++ N ++++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAMPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ AF RR Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF + + L + Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|188588306|ref|YP_001919554.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska E43] gi|188498587|gb|ACD51723.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska E43] Length = 283 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 140/276 (50%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K ++ Y K +GQNFLLD ++L I + + +IEIG G G LT LL Sbjct: 8 TKELVKKYNFRFSKSLGQNFLLDESVLNDIVCGAEVNENDFIIEIGPGVGTLTAKLL-QK 66 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V IE D PIL+ ++ ++ E+I +DALKVDF + ++++ANLPY + Sbjct: 67 AKRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYV 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + + +ESLT++ QKEV ERI A+ N YG LSVL + ++ Sbjct: 126 TTPIIVKLLKEN---HKFESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRK 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS-----LK 242 +SP F P PKV S VI NP + L I + F RRKTL + L Sbjct: 183 VSPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLS 242 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + I+ RAE LSIE+F + + + D Sbjct: 243 KEDLQKAFDSCNIDPKRRAETLSIEEFAVLADSIHD 278 >gi|87119768|ref|ZP_01075665.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121] gi|86165244|gb|EAQ66512.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121] Length = 270 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 9/267 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D +++ I G ++EIG G G LTQ ++ + V+E Sbjct: 7 HKARKRFGQNFLHDHGVIRNIVACIAPKKGQRIVEIGPGKGALTQGIIA-ATESMDVVEL 65 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ PILK ++P L I + DA+K DF + + IR++ NLPYNI T L+F+ + Sbjct: 66 DRDLIPILKVNLFRYPE-LRIHEADAMKFDFSQLATEGN-IRVVGNLPYNISTPLIFHLL 123 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S +++ + QKEV +R+ A+ YGRLSV+ + + +F + P F P+ Sbjct: 124 SQAN---IIDNMHFMLQKEVVDRLAARPGDNLYGRLSVMAQYYCQVESLFVVGPESFDPA 180 Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S ++ P+ LE+L++ + F +RRKTLR + K + + I+ Sbjct: 181 PKVDSAIVRMTPYQEKPYLADSLETLERAVRLGFQQRRKTLRNNYKGILNNDDFDALDID 240 Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283 LR E L + DF +I N L DN++ + Sbjct: 241 PGLRPERLDVPDFVKIANYL-DNKEAS 266 >gi|254555556|ref|YP_003061973.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1] gi|300767100|ref|ZP_07077013.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|254044483|gb|ACT61276.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1] gi|300495638|gb|EFK30793.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 296 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 147/291 (50%), Gaps = 21/291 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 + + N + + + I+ Y + KK +GQNFL D N+L I ++ VIEIG G G Sbjct: 6 LDIANPART-RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGA 64 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A V+ E D + PIL + + + N + ++ D LK D + + Sbjct: 65 LTEYLA-RAAHHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNE 122 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P++++ANLPY I T +L N ++ D +E++ ++ QKEV +R+ A+ + YG L++ Sbjct: 123 RPLKLVANLPYYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTI 179 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRR 234 +R A M + VF PSP V S ++ P +P + K+ + F RR Sbjct: 180 AVQYRMAAEMAMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRR 239 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 K L +L+ L G+ L A I+ +RAE L++++F +T+ L Sbjct: 240 KNLWNNLQSLFGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290 >gi|195977405|ref|YP_002122649.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869264|ref|YP_002745212.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus] gi|226732627|sp|B4U0U9|RSMA_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|259494258|sp|C0MF36|RSMA_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|195974110|gb|ACG61636.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225702540|emb|CAX00496.1| dimethyladenosine transferase [Streptococcus equi subsp. zooepidemicus] Length = 290 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K IL Y KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116 LT+ L A +V+ E D++ PIL D N ++++ D LK D + +F N Sbjct: 60 LTEFLAERAA-EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ P+ + ++++ F RR Sbjct: 175 AVQYYMTAKIAFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KTL +L G E L AGI+ ++R E LSI+DF R+ + L Sbjct: 235 KTLWNNLVSHFGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADALK 286 >gi|260767123|ref|ZP_05876068.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972] gi|260617878|gb|EEX43052.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972] gi|315181266|gb|ADT88180.1| dimethyladenosine transferase [Vibrio furnissii NCTC 11218] Length = 271 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 137/267 (51%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPQPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF + ++ +RI NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A S YGRL+V+T + K + ++ P F Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMTQYYCKVVPVLEVPPTAF 180 Query: 196 FPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P PKV S V+ +P+ + P P L+ L ++ +E F +RRKT+R K L +L + Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPTTSLKWLDRVVREGFNQRRKTVRNCYKGLLELEVLEEL 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 G+ +R ENL+++ F + N L N Sbjct: 241 GVNPGMRPENLTLQQFVAMANWLDANH 267 >gi|110834909|ref|YP_693768.1| ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2] gi|122064277|sp|Q0VMV2|RSMA_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110648020|emb|CAL17496.1| Ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2] Length = 280 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 91/259 (35%), Positives = 136/259 (52%), Gaps = 8/259 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ+FL D N++ ++ + G G T++EIG G G LT LL + V+E Sbjct: 4 HRTRKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLEELPH-LHVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ +L+ P RL I + DAL+ DF P+R+I NLPYNI T L+F+ + Sbjct: 63 DRDLIALLRQ--ENTPERLTIHESDALRFDFRTLKPADKPLRVIGNLPYNISTPLIFHLL 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +T + QKEV ER+TA + +GRLS++ + +A +F + P F P Sbjct: 121 AQADA---ISDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPP 177 Query: 199 PKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S V+ IPH P P E L+K+ +AF +RRK +R LK GI+ Sbjct: 178 PRVDSAVVRLIPHDSPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQAVGID 237 Query: 257 TNLRAENLSIEDFCRITNI 275 LR + LS+ D+ + NI Sbjct: 238 AGLRPDQLSVADYVALANI 256 >gi|34495576|ref|NP_899791.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC 12472] gi|88911348|sp|Q7P1U1|RSMA_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|34101431|gb|AAQ57800.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 98/265 (36%), Positives = 142/265 (53%), Gaps = 12/265 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +++ I + VIEIG G G +T+ LL + + V+E Sbjct: 3 KHIPRKRFGQNFLQDASVIAGIVHAVNPQPDDIVIEIGPGLGAITKPLLARL-KHLHVVE 61 Query: 78 KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ LK ++HP ++L I DAL DF +P++I+ NLPYNI T LLF+ Sbjct: 62 IDRDIIERLK---AEHPADKLTIHAGDALAFDFASV--SEAPLKIVGNLPYNISTPLLFH 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + + QKEV ER+ A+ ++ YGRL+V+ +R + + P F+ Sbjct: 117 L---ASYGNRVTDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFYMENILFVPPEAFW 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ IP + L+K+ +AF +RRKTLR +LK L L G Sbjct: 174 PPPKVDSAVVRMIPAPGRCGTARDEALLEKLVSQAFAQRRKTLRNNLKGLADAADLEALG 233 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 I+ LR ENL +EDF R+ N L D Sbjct: 234 IDPGLRPENLPVEDFVRLANHLHDK 258 >gi|223934090|ref|ZP_03626038.1| dimethyladenosine transferase [Streptococcus suis 89/1591] gi|223897236|gb|EEF63649.1| dimethyladenosine transferase [Streptococcus suis 89/1591] Length = 290 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D + N + ++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A +E ++R E LS+ DF R+++ L + Sbjct: 235 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|317473695|ref|ZP_07932982.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA] gi|316898816|gb|EFV20843.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA] Length = 286 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 18/290 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + I+ Y +K GQNFL+D ++L+KI +++ V+EIG G G Sbjct: 1 MEKLSSPKKTIEIIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITKDDFVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+V+ +E D PILK+ + + N +E++ +D LKVD K N Sbjct: 61 MTQYLSEH-AREVMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGR 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ + +SLT++ QKEV +R+ A + YG LS+ Sbjct: 119 PIKVVANLPYYITTPIIMGLFEKNVP---MDSLTVMVQKEVAQRMQAGPGTKDYGALSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRK 235 + + ++ ++ P+ F P PKV S VI + + P+ E L I + +F +RRK Sbjct: 176 VQFYAEPYIVANVPPNCFMPRPKVGSAVICLTRYKDMPVKVKNEQLMFSIIRASFNQRRK 235 Query: 236 TLRQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL+ + + L + G+ +R E LS+E F R++++L Sbjct: 236 TLQNGINNSSTLHFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLLE 285 >gi|158321677|ref|YP_001514184.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs] gi|166987688|sp|A8MK56|RSMA_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158141876|gb|ABW20188.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs] Length = 287 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 147/289 (50%), Gaps = 17/289 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K I+ Y+ K +GQNFL+D NIL I + + +G +IE+G G G+ Sbjct: 1 MDRISSPKKTKEIVQKYEFKFSKSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118 LTQ + A V+ +E D+ PILK+ +PN +E+I +D LK+D K P Sbjct: 61 LTQNIAER-ADSVLAVEIDKTLIPILKETLGAYPN-VEVINEDVLKLDLHKLIEEKFPGR 118 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++IANLPY + T ++ ++ +SLT++ QKEV +R+ A + YG LS+ Sbjct: 119 NVKVIANLPYYVTTPIIMKFLEEKVP---VKSLTIMIQKEVADRMQAGPGTKDYGALSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + + ++ + P VF P PKV STVI P + ++AFGKRRK Sbjct: 176 VQYYSNPKILLKVPPSVFIPQPKVESTVIRLDILDTPKVSVEREDLFFSLVKDAFGKRRK 235 Query: 236 TLRQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL +L + +L + I+ N R E L+IE++ + N L Sbjct: 236 TLLNALSTGDLKLEKSLLREVLAASNIDENRRGETLTIEEYGVLANNLA 284 >gi|119470580|ref|ZP_01613283.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7] gi|119446281|gb|EAW27558.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7] Length = 268 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 133/267 (49%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ KI + ++EIG G G +T+ + L + V Sbjct: 6 HLGHRARKRFGQNFLFDEMIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L + P +L + Q DA+K DF +++ NLPYNI T LLF Sbjct: 65 VELDKDLAKRLIEHPFLGP-KLTVNQGDAMKYDFASLVKDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV +R+ A S +GRLSV+T + A + ++ P F Sbjct: 124 HLFE---FADNIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPECF 180 Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S VI IP ++ L + EAF +RRKTLR SL L + Sbjct: 181 KPAPKVDSAVIRLIPKKPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEEMASI 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 G++ LRAE+LS++ F I N + D + Sbjct: 241 GVDATLRAESLSLQQFIDIANWIYDKE 267 >gi|227891849|ref|ZP_04009654.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741] gi|227866312|gb|EEJ73733.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741] Length = 296 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + I+ Y + KK +GQNFL D+NILK I ++ + VIEIG G G LT Sbjct: 8 IANPTRT-RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALT 66 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118 + L A KV+ +E D + P+L D S + N +E+I D LK D E F Sbjct: 67 EQLAKR-ANKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHK 124 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T +L + + + +E++ ++ QKEV ER+ A + YG LSV Sbjct: 125 LKLVANLPYYITTPILMHLLDSGI---EFETIVVMMQKEVAERLAANPGTKAYGSLSVAV 181 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKT 236 + + + F + VF P P V S +I P + KK+ + +F RRK+ Sbjct: 182 QYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKS 241 Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277 L +L+ L G++ L A I+ ++RAE L++ DF +++ L Sbjct: 242 LWNNLQSLYGKDSETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALE 291 >gi|168205777|ref|ZP_02631782.1| dimethyladenosine transferase [Clostridium perfringens E str. JGS1987] gi|168209755|ref|ZP_02635380.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC 3626] gi|168217634|ref|ZP_02643259.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239] gi|170662648|gb|EDT15331.1| dimethyladenosine transferase [Clostridium perfringens E str. JGS1987] gi|170712059|gb|EDT24241.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC 3626] gi|182380335|gb|EDT77814.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239] Length = 285 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 142/284 (50%), Gaps = 13/284 (4%) Query: 1 MTMNN-KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N K K ++ Y K +GQNFL+D ++ + I + + VIEIG G G Sbjct: 1 MDINEIKDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 LT LL A++V+ IE D PIL +P + ++I +DALKVDF + + Sbjct: 61 TLTVQLLKR-AKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGAEKSV 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY + T ++ N + ++SLT++ QKEV ER+ A+ N YG LS+L Sbjct: 119 KLVANLPYYVTTPIIVNLLKG---GYNFKSLTIMIQKEVAERMNAEPNCKDYGALSILVQ 175 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + ++ + P F P PKV S VI P + +I + AF RRKTL Sbjct: 176 YYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSVKVKNEKLFFEIVRHAFNMRRKTL 235 Query: 238 RQS-----LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L + E + GI+ R E LS+ +F +++ + Sbjct: 236 WNATKNVKLPKELMEKAYEEVGIDPKRRGETLSLAEFGALSDAI 279 >gi|259501903|ref|ZP_05744805.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041] gi|259170080|gb|EEW54575.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041] Length = 297 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 22/292 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + I+ Y I KK GQNFL DLN+LK I ++ VIEIG G G LT+ L Sbjct: 9 SRTRTRAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEISKDDNVIEIGPGIGALTEQL 68 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIR 120 A +V+ +E DQ P+L ++ + + N + ++ D L+ + + F + + P++ Sbjct: 69 A-QAAGEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFADPAKPVK 126 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I + +L N ++A P W ++ ++ QKEV +R+TAQ + YG L++ + Sbjct: 127 VVANLPYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEY 183 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTL 237 + A + F++S VF P+P V S ++ P P+ P + L + F RRK+L Sbjct: 184 QMTAEIAFNVSRRVFVPAPNVDSAIVVLKPRATPLAVEPFDKQKLFGFIRACFAHRRKSL 243 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L+ G+ +L Q I R E L++E F ++ N L Q Sbjct: 244 WNNLQAAVGKQPAVKEQLQAILTQLAISPQTRPERLTLEQFIKLANALHAAQ 295 >gi|251793858|ref|YP_003008590.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700] gi|247535257|gb|ACS98503.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700] Length = 287 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 136/273 (49%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL D N+++ I + ++EIG G G LT+ + ++ Sbjct: 5 KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQSHQFLVEIGPGLGALTEPVAEQ-VERLT 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128 V+E D+ L+ H +L +I+ DA++ DF E +R+ NLPYN Sbjct: 64 VLELDRDLAERLRHHPFLHQ-KLSVIETDAMQFDFSGLYEQEHLAEKGQKMRVFGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + Sbjct: 123 ISTPLMFHLFKYH---HIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++ P F P+PKV S V+ IPH L L ++ +AF +RRKTLR +L L Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHAILPHPVKDLYWLNRVCSQAFNQRRKTLRNALSDLFL 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ N RAENLSI D+ R+ N L DN Sbjct: 240 PENLTALNIDLNARAENLSIADYARLANWLADN 272 >gi|153873941|ref|ZP_02002345.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS] gi|152069594|gb|EDN67654.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS] Length = 266 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 145/262 (55%), Gaps = 7/262 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQ+FL D I+++I + ++EIG G G LT LL G + VIE Sbjct: 2 HFPRKRFGQHFLHDTGIIQRIITAIAPQKEQHLVEIGPGKGALTLPLLQQG-FALDVIEF 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK ++ +L I+ DALK DF++ P+RI NLPYNI T LLF+ + Sbjct: 61 DRDLVEWLKQ-NTLSSQQLNILSADALKFDFKQLVTDKQPLRIFGNLPYNISTSLLFHLV 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + +T + QKEV +R+ A ++ +YGRLSV+ + + +FD+ P F P Sbjct: 120 HYNNH---IQDMTFMLQKEVVDRMIATPSTKNYGRLSVMLQYYCQINKLFDVDPEAFRPP 176 Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV ST++ IPH++P + L K+ AF ++RKTLR +LK + + + AGI+ Sbjct: 177 PKVNSTIVQLIPHVSPPVEVINDKQLSKMVALAFSQKRKTLRNTLKNVLDADAIQAAGID 236 Query: 257 TNLRAENLSIEDFCRITNILTD 278 RAE L++ +F R+ N + Sbjct: 237 PQARAETLTLAEFARLANSFVN 258 >gi|308179573|ref|YP_003923701.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045064|gb|ADN97607.1| dimethyladenosine transferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 20/286 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + I+ Y + KK +GQNFL D N+L I ++ VIEIG G G LT+ L Sbjct: 10 SPARTRAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL 69 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRI 121 A V+ E D + PIL + + + N + ++ D LK D + + P+++ Sbjct: 70 A-RAAHHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKL 127 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T +L N ++ D +E++ ++ QKEV +R+ A+ + YG L++ +R Sbjct: 128 VANLPYYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYR 184 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 A M + VF PSP V S ++ P +P + K+ + F RRK L Sbjct: 185 MAAEMAMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRRKNLWN 244 Query: 240 SLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L+ L G+ L A I+ +RAE L++++F +T+ L Sbjct: 245 NLQSLFGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290 >gi|116871577|ref|YP_848358.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458009|sp|A0AEZ3|RSMA_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116740455|emb|CAK19575.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 295 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++G VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAGISKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVITQQFSKSELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|225575697|ref|ZP_03784307.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM 10507] gi|225037077|gb|EEG47323.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM 10507] Length = 294 Score = 284 bits (727), Expect = 9e-75, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 155/299 (51%), Gaps = 22/299 (7%) Query: 1 MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + + +++ IL Y + +K GQNFL+D ++L KI +S V+EIG G Sbjct: 1 MTKPYLGDPKNTI-EILKKYDFVFQKRFGQNFLIDTHVLDKIIRASDIQKSDFVLEIGPG 59 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---N 114 G +TQ L AR+V+ +E D+ PILKD S + N + +I +D LKVD K N Sbjct: 60 IGTMTQYLAD-AAREVVAVEIDKSLIPILKDTLSSYSN-VTVINEDVLKVDIRKIAEERN 117 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 PI+++ANLPY I T ++ ES+T++ QKEV +R+ + YG L Sbjct: 118 EGKPIKVVANLPYYITTPIIMGLFEKKVP---IESITIMVQKEVADRMKVGPGTKDYGAL 174 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 S+ + + M+ ++ + F P PKV S VI + H P + + + + +F + Sbjct: 175 SLAVQYYAEPKMIANVPSNCFMPRPKVGSAVIQLLRHEKPPVEVDDESQMFAMIRASFNQ 234 Query: 233 RRKTLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 RRKTL +L++ E L G+ N+R E L++++F ++N L ++++ Sbjct: 235 RRKTLVNGLKNSRELNLQKEEIEEALTACGLSLNVRGEMLTLKEFSDLSNFLVRKRNVS 293 >gi|88704595|ref|ZP_01102308.1| Dimethyladenosine transferase [Congregibacter litoralis KT71] gi|88700916|gb|EAQ98022.1| Dimethyladenosine transferase [Congregibacter litoralis KT71] Length = 268 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 136/265 (51%), Gaps = 7/265 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQNFL D ++ ++ + ++EIG G G LT LL G ++ IE Sbjct: 9 HQPRKRFGQNFLRDPGVIDRLERAIAPAASQHLVEIGPGLGALTDALLQSGC-QLDAIEL 67 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L S HPN + DALK DF +R++ NLPYNI T L+F + Sbjct: 68 DRDLVTPLLAAFSIHPN-FTLHSADALKFDFSSVVRGEEQLRVVGNLPYNISTPLIFRLL 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + + Q EV +R+TA + H+GRL ++ + + ++F++ P F P Sbjct: 127 EQA---PIIKDMHFMLQLEVVQRLTATPGNKHWGRLGIMAQYLCRTELLFEVPPEAFDPP 183 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S +I PH +P C + L+K+ + AF +RRKTLR +LK L + + GI+ Sbjct: 184 PKVQSAIIRLTPHQSPLYPDCDSKILEKVVKAAFAQRRKTLRNNLKGLLTDEAIEATGID 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 RAE L++ F + L ++Q Sbjct: 244 PGCRAETLALARFVALAEQLENSQP 268 >gi|163814787|ref|ZP_02206176.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759] gi|158450422|gb|EDP27417.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759] Length = 287 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 19/290 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 ++N ++ + Y+ +K GQNFL+D +++ KI ++ V+EIG G G +T Sbjct: 4 LSNPQVTI-ETIKKYEFAFQKKFGQNFLIDSHVINKIISAADITKDDCVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119 Q L A +V+ +E D+ PIL + +++ N + +I DD LKVD K N PI Sbjct: 63 QYLAES-AGQVVAVEIDKNLLPILDETLAEYDN-VTVINDDILKVDINKIVEERNGGRPI 120 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ S+T++ QKEV +R+ + YG LS+ Sbjct: 121 KVVANLPYYITTPIIMGLFEKHVP---LLSVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + + ++ ++ P+ F P P V S VI P + + ++ + +F +RRKTL Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLTRFQEPPVKVKDEQLMFRLIRASFNQRRKTL 237 Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + S + L GI N+R E+L + +F +++IL+D Sbjct: 238 QNGIANSGELSFTKEEVAKALESLGISANIRGESLGLAEFAALSDILSDK 287 >gi|290892256|ref|ZP_06555251.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071] gi|290558082|gb|EFD91601.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071] Length = 295 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|157149731|ref|YP_001449514.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis substr. CH1] gi|189028823|sp|A8AUQ4|RSMA_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157074525|gb|ABV09208.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis substr. CH1] Length = 290 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 147/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ D LKVD +F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+AQ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P + K+T+ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAVEVQDEKFFFKVTKASFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G EN L +A + N+R E L + F R+++ L Sbjct: 235 KTLWNNLTSYFGKSEEVKEKLENALAKANLVANVRGEALDLVAFARLSDALKS 287 >gi|315222376|ref|ZP_07864281.1| dimethyladenosine transferase [Streptococcus anginosus F0211] gi|315188537|gb|EFU22247.1| dimethyladenosine transferase [Streptococcus anginosus F0211] Length = 291 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 92/293 (31%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + +L + KK GQNFL D NIL+KI +++ + + VIEIG G G Sbjct: 1 MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LK D ++F N + Sbjct: 60 LTEFLAENTA-EVMAFEIDDRLVPILADTLRDFDN-VRVVNEDILKSDLQARIKEFANPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ NS YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNSKSYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E+ L A + ++R E L +++F + + L D Sbjct: 235 KTLWNNLTSYFGKSNEVKTKLESALDNAELSPSVRGEALDLQEFAHLADSLYD 287 >gi|160882017|ref|YP_001560985.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg] gi|189028804|sp|A9KL97|RSMA_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160430683|gb|ABX44246.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg] Length = 290 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 18/290 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + + ++ +L+ Y+ I +K GQNFL+D ++L+KI S+ V+EIG G G +T Sbjct: 4 LGDPKQTI-EVLNRYRFIFQKKFGQNFLIDTHVLEKIIRSAEITKDDLVLEIGPGIGTMT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L AR+V+ +E D+ PIL+ + + + II +D LKVD + N PI Sbjct: 63 QYLCE-NAREVVAVEIDKNLIPILEQDTLSSYDNVTIINEDILKVDINQIVKEKNGGKPI 121 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ A +++T++ QKEV +R+ + S YG LS+ Sbjct: 122 KVVANLPYYITTPIIMGLFEAHVP---IDNITVMVQKEVADRMQSGPGSKDYGALSLAVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + ++ ++ P+ F P P V S VI H + L K+ + +F +RRKTL Sbjct: 179 YYADPYIVANVPPNCFMPRPNVGSAVIRLTLHQDAPVKVKNENLLFKLIRASFNQRRKTL 238 Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 SL + + + G+ +R E L++E F ++ +I+ + Sbjct: 239 ANGLNNSPEISLPKEMISEAIEELGVVATIRGEALTLEQFAKLADIIDEK 288 >gi|77412114|ref|ZP_00788438.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111] gi|77161821|gb|EAO72808.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111] Length = 290 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G Sbjct: 1 MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL ++ N ++++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILAGTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAMPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ AF RR Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI DF + + L + Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287 >gi|237746914|ref|ZP_04577394.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes HOxBLS] gi|229378265|gb|EEO28356.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter formigenes HOxBLS] Length = 256 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 100/261 (38%), Positives = 136/261 (52%), Gaps = 7/261 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P+K GQNFL D ++L KI + ++EIG G G +T LL +R + VIE Sbjct: 2 KHLPRKRFGQNFLKDPSVLDKIIAAIAPAASDIMVEIGPGMGAMTGKLLPSLSR-LEVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136 D+ L++ P +L + Q DAL D IRI+ NLPYNI T LLF+ Sbjct: 61 LDRDLVVYLRNTFP--PEKLVVHQGDALAFDMRSLKEQSGEKIRIVGNLPYNISTPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + F + + Q+EV ER+ A+ S YGRLSV+ W+ M+F + P F Sbjct: 119 LLE---FSLFVKDQHFMLQREVVERMVAEPGSKAYGRLSVMLQWQYDMDMLFIVPPEAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P PKV S V+ IP NP C +L+K +AF +RRK LR +L E L GIE Sbjct: 176 PQPKVDSAVVRMIPKENPEKCSFPALEKTVTQAFSQRRKMLRNNLAPFFTEAELTGLGIE 235 Query: 257 TNLRAENLSIEDFCRITNILT 277 R E LS+E F R+ N L Sbjct: 236 PTKRPEELSVEQFIRLANHLK 256 >gi|77361550|ref|YP_341125.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis TAC125] gi|119365048|sp|Q3IFD1|RSMA_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|76876461|emb|CAI87683.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, Kasugamycin dimethyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 268 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 133/267 (49%), Gaps = 7/267 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ KI + ++EIG G G +T+ + L + V Sbjct: 6 HLGHRARKRFGQNFLFDDMIIGKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L + P +L + Q DA+ DF +++ NLPYNI T LLF Sbjct: 65 VELDKDLAQRLIEHPFLGP-KLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + + QKEV +R+ A S +GRLSV+T + A + ++ P F Sbjct: 124 HLFE---FADNIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPECF 180 Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S VI IP ++ L + EAF +RRKTLR SL L + L Sbjct: 181 KPAPKVDSAVIRLIPKKPEQRTAKSVKILNNVCLEAFNQRRKTLRNSLSNLLTADELTSI 240 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ LRAE LS++ F I N + DN+ Sbjct: 241 GIDVTLRAERLSLQQFIDIANWIYDNK 267 >gi|319940004|ref|ZP_08014358.1| ribosomal RNA small subunit methyltransferase A [Streptococcus anginosus 1_2_62CV] gi|319810718|gb|EFW07045.1| ribosomal RNA small subunit methyltransferase A [Streptococcus anginosus 1_2_62CV] Length = 291 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + +L + KK GQNFL D NIL+KI +++ + + VIEIG G G Sbjct: 1 MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D++ PIL D N + ++ +D LK D ++F N S Sbjct: 60 LTEFLAENAA-EVMTFEIDERLVPILADTLRDFDN-VCVVNEDILKSDLQVRIKEFANPS 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+AQ NS YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNSKSYGNLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P K+++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E+ L A + ++R E L++++F R+ + L D Sbjct: 235 KTLWNNLTSYFGKSNEVKTKLESALDNAELSPSVRGEALNLQEFARLADSLYD 287 >gi|332522163|ref|ZP_08398415.1| dimethyladenosine transferase [Streptococcus porcinus str. Jelinkova 176] gi|332313427|gb|EGJ26412.1| dimethyladenosine transferase [Streptococcus porcinus str. Jelinkova 176] Length = 290 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N +++I D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVINQDILKADLQTQIQGFENPE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++ + F RR Sbjct: 175 AVQYYMVAKVAFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G EN L AGI+ N+R E L+I +F ++ + L Sbjct: 235 KTLWNNLTSHFGKSEETKKKLENALELAGIKANIRGEALTIAEFGKLADALKS 287 >gi|304311710|ref|YP_003811308.1| Dimethyladenosine transferase [gamma proteobacterium HdN1] gi|301797443|emb|CBL45663.1| Dimethyladenosine transferase [gamma proteobacterium HdN1] Length = 279 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 129/262 (49%), Gaps = 7/262 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + KK GQNFL D +++ I + ++EIG G G LT LL ++ I Sbjct: 9 HGHTVKKRFGQNFLHDPHVIDSIVAAVNPQKSDNLVEIGPGQGALTGALLPYL-DQLQAI 67 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ P L + +L I Q DAL+ DF + +R++ NLPYNI T LLF+ Sbjct: 68 ELDRDLIPYLLASFATT-GKLHIHQADALRFDFGTLIHPDKKLRVVGNLPYNISTPLLFH 126 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + + + QKEV +R+ A N YGRL ++ + +FD+ P F Sbjct: 127 LLDYAS---GIQDMHFMLQKEVVDRMAAGANEEAYGRLGIMIQYHCNVEALFDVPPEAFN 183 Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKVTS ++ P ++ L + EAF +RRKT+R +LK L G Sbjct: 184 PPPKVTSAIVRLTPRSAHVTPALDVKLLGTLVTEAFTQRRKTVRNALKNRLSPEDLEACG 243 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I+ LR ENL++ D+ + N L Sbjct: 244 IDLKLRPENLTLNDYVSLANYL 265 >gi|313635198|gb|EFS01504.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067] Length = 295 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIP---VDSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E L+ GI+ R E L I +F +++N L D Sbjct: 248 FPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|304438548|ref|ZP_07398487.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368386|gb|EFM22072.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 292 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 92/275 (33%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + ILS + + K++GQNFL+D +++ I +++ TV+EIG G G LTQ L G Sbjct: 14 TRHILSAFHLRASKWLGQNFLVDAGVVRAIVDAADLSRSDTVLEIGPGIGTLTQGLAESG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPY 127 AR ++ +E D++ +L + + N + ++ D LK+D + N+ +++ANLPY Sbjct: 74 AR-IVAVELDKKLPAVLAETLKGYDN-VTVVPGDILKLDILRILNLGAGERFKVVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + E + + QKEV R+TA+ S YG LS+ + T A ++ Sbjct: 132 YITTPILMALLEQHLP---IERMVTMVQKEVAVRMTARPGSKDYGALSIAVQYYTDAHIV 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P+P+VTS VI P P + ++ + AFG+RRKTL +L G Sbjct: 189 MDVPPRAFMPAPEVTSAVIACRMRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAG 248 Query: 246 -GENL----LHQAGIETNLRAENLSIEDFCRITNI 275 + L L AGI +LR E LS+ DF R+++ Sbjct: 249 LTKELCRAGLAAAGIAESLRGEQLSLADFARLSDA 283 >gi|217965726|ref|YP_002351404.1| dimethyladenosine transferase [Listeria monocytogenes HCC23] gi|254807872|sp|B8DGN7|RSMA_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|217334996|gb|ACK40790.1| dimethyladenosine transferase [Listeria monocytogenes HCC23] gi|307569727|emb|CAR82906.1| dimethyladenosine transferase [Listeria monocytogenes L99] Length = 295 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAYSN-VQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|289433536|ref|YP_003463408.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169780|emb|CBH26316.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 295 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDESFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E L+ GI+ R E L I +F +++N L D Sbjct: 248 FPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|224826759|ref|ZP_03699859.1| dimethyladenosine transferase [Lutiella nitroferrum 2002] gi|224600979|gb|EEG07162.1| dimethyladenosine transferase [Lutiella nitroferrum 2002] Length = 258 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 11/265 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +++ I + G V+EIG G G LT+ LL + V+E Sbjct: 3 KHIPRKRFGQNFLQDASVIASIVHAVNPQPGDIVVEIGPGLGALTRPLLARLPH-LHVVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ LK P RL I + DAL D F +I + ++I NLPYNI T LLF+ Sbjct: 62 IDRDIISRLKSEFP--PERLTIHEGDALAFD---FSSIGTRFKLIGNLPYNISTPLLFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ + + QKEV ER+ A+ ++ YGRL+V+ +R + + + P F+P Sbjct: 117 ---ASYGDRVVDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFEMEQILHVPPGAFWP 173 Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ IP + L+ + AF +RRKTLR +LK + E GI Sbjct: 174 PPKVESAVVRMIPAPGRCGVATDEAELEALVTLAFSQRRKTLRNNLKGVLDEADFAALGI 233 Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280 ++ LR ENL++E + + N+L+ + Sbjct: 234 DSGLRPENLTVEQYVAMANLLSSRR 258 >gi|220935881|ref|YP_002514780.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7] gi|219997191|gb|ACL73793.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7] Length = 267 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 135/260 (51%), Gaps = 7/260 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 IP+K GQ+FL + I++++ + G ++EIG G G LT LL R + V+E Sbjct: 5 HIPRKRFGQHFLHETAIIERMVAAIAPRPGEALVEIGPGLGALTAPLLERC-RVLHVVEL 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P L + L + Q DAL+ DF +R++ NLPYNI T L+F+ + Sbjct: 64 DRDVIPPLVERCQGL-GELRVHQADALRFDFATLAPEGGQLRVVGNLPYNISTPLIFHLL 122 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + L QKEV +R+ A N+ YGRLSV+T + +A +F + P F P Sbjct: 123 KSA---PRIRDMHFLLQKEVVDRLAAAPNTRDYGRLSVMTQYHCRAEALFRVGPGAFRPP 179 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S + P P P E+L + +AF +RRKTLR +++ + + + AG++ Sbjct: 180 PKVDSAYVRLTPWETLPHPAADEALFASLVNQAFTQRRKTLRNAVRGMADADTIEAAGLD 239 Query: 257 TNLRAENLSIEDFCRITNIL 276 R E LS+ F + N + Sbjct: 240 PAARPETLSVAQFVALANRI 259 >gi|15896238|ref|NP_349587.1| dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824] gi|27151592|sp|Q97EX0|RSMA_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|15026041|gb|AAK80927.1|AE007795_6 Dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824] Length = 276 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 12/279 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ Y K +GQNFL D +L I E++ +IEIG G G LT+ L Sbjct: 2 KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A+KV IE D+ PI+ + ++ N +I +DALKVDF ++++ANL Sbjct: 62 LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 119 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ ++SLT++ QKEVG+RI A+ ++ YG L++L + Sbjct: 120 PYYVTTPIISKLLNE---GYNFKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 176 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ + P F P PKV S VI P + + + AF RRKTL ++K Sbjct: 177 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 236 Query: 244 LG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L E AGI++ R E LSIE+F ++++ + Sbjct: 237 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSDEIY 275 >gi|114319429|ref|YP_741112.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1] gi|114225823|gb|ABI55622.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1] Length = 274 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 8/264 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 +H + P+K GQNFL D ++ ++ ++ G ++EIG G G LT LL A ++ Sbjct: 3 NHRRHRPRKRFGQNFLHDPTLISRMVKAIRPRPGDPLVEIGPGEGALTLPLL-RAAGRLT 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133 +E D+ L+ ++ L + Q DAL+ DF + +R++ NLPYNI T L Sbjct: 62 AVELDRDLVAPLQAR-ARTAGELTVHQADALRFDFRQLAPAPPARLRVVGNLPYNISTPL 120 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + + QKEV ER+ A S YGRLSV+ +R T +F + P Sbjct: 121 LFHLLESAD---VIQDMHFTLQKEVVERLAAPPGSKTYGRLSVMVQYRCAVTNLFRLPPG 177 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S + +PH P ++ ++ +AF +RRKTLR +L+ L + + Sbjct: 178 AFRPPPKVDSAFVRLVPHAEPTVDVGDEQAFARLVTQAFSQRRKTLRNTLRPLMSADTII 237 Query: 252 QAGIETNLRAENLSIEDFCRITNI 275 GI+ RAENLS+E F ++ Sbjct: 238 GVGIDPRERAENLSLEQFAALSQA 261 >gi|260584339|ref|ZP_05852086.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633] gi|260157857|gb|EEW92926.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633] Length = 306 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 146/286 (51%), Gaps = 20/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + I+ + I KK +GQNFL++ NIL K+ + + VIEIG G G LTQ L Sbjct: 21 PTRTREIMERHGIKVKKSLGQNFLIEPNILTKMLDVADVNKETNVIEIGPGIGALTQRLA 80 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 A+KV+ E D + P+L+D S H N + +I +D LKVD E + F++ + ++ Sbjct: 81 -RAAKKVLAFEIDGRLIPVLEDTLSDHDN-VTVIHEDILKVDLETVIQEHFDVEERLLVV 138 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ + + + + ++ QKEV ER+TAQ NS YG L+V + Sbjct: 139 ANLPYYITTPIIMDLLESGLP---IDGFAMMMQKEVAERMTAQPNSKAYGSLTVAIQYWC 195 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 A + F + VF P+P V S ++ P+ + + + +F +RRKTL + Sbjct: 196 HAKIGFIVPKTVFNPAPNVDSAILVLERREEPLVTVKDEAFFFDLVKNSFVQRRKTLWNN 255 Query: 241 LKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + + L IE N RAE L+IE+F ++N L Sbjct: 256 LVKAYVPGKLTKEQIQEALDSVSIEPNRRAETLTIEEFAALSNQLQ 301 >gi|16802234|ref|NP_463719.1| dimethyladenosine transferase [Listeria monocytogenes EGD-e] gi|47096181|ref|ZP_00233780.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a F6854] gi|224500359|ref|ZP_03668708.1| dimethyladenosine transferase [Listeria monocytogenes Finland 1988] gi|224503492|ref|ZP_03671799.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-561] gi|254829279|ref|ZP_05233966.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165] gi|254832492|ref|ZP_05237147.1| dimethyladenosine transferase [Listeria monocytogenes 10403S] gi|254901027|ref|ZP_05260951.1| dimethyladenosine transferase [Listeria monocytogenes J0161] gi|254913905|ref|ZP_05263917.1| dimethyladenosine transferase dimethyltransferase [Listeria monocytogenes J2818] gi|254938304|ref|ZP_05270001.1| dimethyladenosine transferase [Listeria monocytogenes F6900] gi|255030001|ref|ZP_05301952.1| dimethyladenosine transferase [Listeria monocytogenes LO28] gi|27151582|sp|Q8YAE2|RSMA_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|16409545|emb|CAC98403.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria monocytogenes EGD-e] gi|47015429|gb|EAL06363.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a F6854] gi|258601690|gb|EEW15015.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165] gi|258610916|gb|EEW23524.1| dimethyladenosine transferase [Listeria monocytogenes F6900] gi|293591922|gb|EFG00257.1| dimethyladenosine transferase dimethyltransferase [Listeria monocytogenes J2818] Length = 295 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|47092871|ref|ZP_00230654.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b H7858] gi|254825899|ref|ZP_05230900.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194] gi|47018775|gb|EAL09525.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b H7858] gi|293595137|gb|EFG02898.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194] gi|328468506|gb|EGF39512.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Listeria monocytogenes 1816] Length = 295 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKDDLVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|255025830|ref|ZP_05297816.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-003] Length = 295 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKAELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|217969878|ref|YP_002355112.1| dimethyladenosine transferase [Thauera sp. MZ1T] gi|217507205|gb|ACK54216.1| dimethyladenosine transferase [Thauera sp. MZ1T] Length = 272 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 89/270 (32%), Positives = 136/270 (50%), Gaps = 13/270 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D NI++KI + G ++EIG G G +T L+ + V+E Sbjct: 8 GHRARKRFGQNFLSDPNIIRKIIDGIRPQPGELMVEIGPGLGAMTDPLIERLGH-LHVVE 66 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGTR 132 D+ L + + P +L + + DALK DF + +RI+ NLPYNI T Sbjct: 67 IDRDLIARLHERYT--PAQLTVHEGDALKFDFGSLCAGEEGGVGPRLRIVGNLPYNISTP 124 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +LF+ + + +T + QKEV R+ A+ + YGRLSV+ +R + +FD+ P Sbjct: 125 ILFHL---AGFADQVKDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMGRLFDVPP 181 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F P+PKV S+++ P + L +I AFG+RRKTLR +L+ + L Sbjct: 182 GAFRPAPKVMSSIVRMAPLPAEQLGARDEALLGRIVAAAFGQRRKTLRNTLREFIDDAGL 241 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ LR E LS+E + I N + Sbjct: 242 QALGIDPGLRGEKLSVEQYVAIANACAGRE 271 >gi|23010583|ref|ZP_00051221.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 263 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 122/260 (46%), Positives = 174/260 (66%), Gaps = 8/260 (3%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQNFL DLN+ +IA ++G+LDG+TV+E+G GPG LT+ LL GA++V+ IE+D + P Sbjct: 2 LGQNFLFDLNLTGRIARAAGALDGVTVVEVGPGPGGLTRALLAAGAQRVVAIERDPRALP 61 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT-- 142 L +I++ +P RL++I DA+ D P+RI+ANLPYN+ T LL W+ A+T Sbjct: 62 ALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVANLPYNVATVLLTGWLGAETRD 120 Query: 143 --WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 WPP+WES TL+FQ+EV ERI A + +YGRL VL GWRT+AT++FD++P F P P Sbjct: 121 EVWPPWWESATLMFQREVAERIVADEGDRANYGRLGVLCGWRTQATILFDVAPSAFVPPP 180 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIET 257 KVTS+++H P P+PC + L+++T+ AFG+RRK LRQSLK + LL AG+ Sbjct: 181 KVTSSIVHLRPRPAPLPCRIADLERVTRAAFGQRRKMLRQSLKAATPDPARLLAAAGLPE 240 Query: 258 NLRAENLSIEDFCRITNILT 277 RAE + + F + L Sbjct: 241 TARAEEIPVAGFVALARALE 260 >gi|319759070|gb|ADV71012.1| dimethyladenosine transferase [Streptococcus suis JS14] Length = 290 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D + N + ++ D LK D + F N Sbjct: 60 LTEFLAE-NAGEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTSILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A +E ++R E LS+ DF R+++ L + Sbjct: 235 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|325510393|gb|ADZ22029.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018] Length = 287 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 12/279 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ Y K +GQNFL D +L I E++ +IEIG G G LT+ L Sbjct: 13 KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 72 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A+KV IE D+ PI+ + ++ N +I +DALKVDF ++++ANL Sbjct: 73 LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ ++SLT++ QKEVG+RI A+ ++ YG L++L + Sbjct: 131 PYYVTTPIISKLLNE---GYNFKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ + P F P PKV S VI P + + + AF RRKTL ++K Sbjct: 188 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 247 Query: 244 LG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L E AGI++ R E LSIE+F ++++ + Sbjct: 248 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSDEIY 286 >gi|310639501|ref|YP_003944259.1| ribosomal RNA small subunit methyltransferase a [Paenibacillus polymyxa SC2] gi|309244451|gb|ADO54018.1| Ribosomal RNA small subunit methyltransferase A [Paenibacillus polymyxa SC2] Length = 294 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 19/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K I+ + KK +GQNFL+D NIL KI ++G D +EIG G G LT+ L Sbjct: 10 PRRTKEIIQRHGFSFKKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122 A+ V +E DQ+ PIL+++ + + + +++ D LK+D + F S + ++ Sbjct: 70 QS-AKAVTAVEIDQRLLPILEEVLAPYEH-VKVRHGDVLKLDLREVFAADFADVSKVSVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + E++ ++ QKEV ER+ A + YG LS+ + + Sbjct: 128 ANLPYYVTTPILMRLLEDKLP---LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYS 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + ++ + VF P P V S VI + ++ AF +RRKT+ + Sbjct: 185 EPELVCTVPNTVFIPQPNVDSAVIRLRVREVPPVEVVDEKHFFEVVHAAFAQRRKTISNN 244 Query: 241 LKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK E LL QA IE + R E LSIE+F R++ +L + Sbjct: 245 LKSRFFTKENRDTLEPLLQQADIEPSRRGETLSIEEFARLSAVLLE 290 >gi|259048129|ref|ZP_05738530.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175] gi|259035190|gb|EEW36445.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175] Length = 289 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 148/285 (51%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + I+ + + KK +GQNFL++ NIL ++ E +G VIEIG G G LT+ L Sbjct: 10 PKRTREIMERHGLTVKKSLGQNFLIEPNILTRMLEVAGVDKTTNVIEIGPGIGALTERLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 A++V+ E D + P+L + + + N + ++ D L VD E + F+I+ P+ ++ Sbjct: 70 -REAKQVLAFEIDGRLLPVLDETLAPYDN-VTVVHSDILDVDLEQVIGEHFDINEPLLVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ N + + + ++ QKEV +R+TA+ NS YG L++ + Sbjct: 128 ANLPYYITTPIIMNLLESKLP---IDGFAMMMQKEVAQRMTAEPNSKAYGSLTIAIQYFC 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +A++ F + VF P+P V S ++ P+ + + +F +RRKTL + Sbjct: 185 EASIGFIVPKTVFNPAPNVDSAILVLKRREKPLVEVKDEAKFFALVKNSFVQRRKTLWNN 244 Query: 241 LKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L + L AGI+ RAE L+IE+F R+++ L Sbjct: 245 LAKAYVGNSHTKESLAAALEVAGIDPTRRAETLTIEEFARLSDAL 289 >gi|270290912|ref|ZP_06197136.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4] gi|304386409|ref|ZP_07368742.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284] gi|270280972|gb|EFA26806.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4] gi|304327766|gb|EFL94993.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284] Length = 297 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 150/290 (51%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + IL Y + KK +GQNFL D N+L I +++ DG VIE+G G G+LT Sbjct: 7 IGNPTRT-RAILEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPGIGSLT 65 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSP 118 + + A +V+ E DQ P+L + + + N + II +D LKV+ + F+ P Sbjct: 66 EQIAKR-AHQVLAFEIDQNLIPVLDETLAPYDN-ITIINEDVLKVNVNEVVAEHFDGQHP 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T +L +++++ + ++ QKEV +R+TAQ YG LSV+ Sbjct: 124 IKLVANLPYYITTPILKSFMASSLP---IAKMVVMMQKEVADRLTAQPGDKEYGSLSVVV 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 +R + + F + VF P PKV S ++ P + P K F RRK Sbjct: 181 QYRMQTQVEFTVPARVFVPQPKVDSAIVSLTPRKDWPVYPADDRDFFKTVHGCFMHRRKN 240 Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277 L +++ L G+ +L + I+ ++R E L++ DF + N + Sbjct: 241 LWNNMQGLYGKAPETKEKIQSVLDELEIDPHIRPERLTVVDFINLHNQIQ 290 >gi|223044398|ref|ZP_03614431.1| dimethyladenosine transferase [Staphylococcus capitis SK14] gi|222442187|gb|EEE48299.1| dimethyladenosine transferase [Staphylococcus capitis SK14] Length = 296 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI ++S D VIE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 A+KV+ E DQ+ P+L+D + + N + II +D LK + K + I ++ Sbjct: 69 K-NAKKVMSFEIDQRLIPVLEDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREEPLVQVDNEEAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + N L A I+ R E L+I+DF + Sbjct: 244 YQNFFKDGKKHKASILNWLESAEIDPKRRGETLTIQDFANLYE 286 >gi|302024552|ref|ZP_07249763.1| dimethyladenosine transferase [Streptococcus suis 05HAS68] gi|330833629|ref|YP_004402454.1| dimethyladenosine transferase [Streptococcus suis ST3] gi|329307852|gb|AEB82268.1| dimethyladenosine transferase [Streptococcus suis ST3] Length = 290 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K + + +L + KK GQNFL D NIL+KI ++ + VIEIG G G Sbjct: 1 MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D + N + ++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A +E ++R E LS+ DF R+++ L + Sbjct: 235 KTLWNNLTNHFGKSDEVKDKLTRALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|126664694|ref|ZP_01735678.1| dimethyladenosine transferase [Marinobacter sp. ELB17] gi|126631020|gb|EBA01634.1| dimethyladenosine transferase [Marinobacter sp. ELB17] Length = 277 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 91/268 (33%), Positives = 140/268 (52%), Gaps = 8/268 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++++I S +++EIG G G +T +L + R + V+E Sbjct: 6 GHQARKRFGQNFLHDPGVIERIVRSIAPKPDQSIVEIGPGLGAITAEILAVNPR-LQVVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ PIL+ +P I Q DALK DF + P+RII NLPYNI T L+F+ Sbjct: 65 LDRDLIPILRTKFFNYPE-FRIHQADALKFDFNELVGE-QPLRIIGNLPYNISTPLIFHL 122 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ + + + QKEV +R+ A +YGRL ++T + K +F++ P F P Sbjct: 123 LA---HSGVVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCKVQPLFEVGPDAFRP 179 Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S ++ +P+ P P L +L+ + + AF RRKTLR++L L Q GI Sbjct: 180 APKVDSFIVRLVPYATLPHPAKDLGTLQAVVRSAFNARRKTLRKALGGFVTAAELQQLGI 239 Query: 256 ETNLRAENLSIEDFCRITNILTDNQDIA 283 LR ENL + ++ I + L A Sbjct: 240 NDGLRPENLGLAEYVAIADYLVARAPGA 267 >gi|56961852|ref|YP_173574.1| dimethyladenosine transferase [Bacillus clausii KSM-K16] gi|62900485|sp|Q5WLW2|RSMA_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56908086|dbj|BAD62613.1| dimethyladenosine transferase [Bacillus clausii KSM-K16] Length = 296 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 148/295 (50%), Gaps = 22/295 (7%) Query: 1 MTMNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M +N + IL + KK +GQNFL+DLNIL KI E+SG + ++EIG G Sbjct: 1 MNLNKDIATPARTNAILKKHGFTLKKSLGQNFLIDLNILAKIVEASGFDEQDGIVEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----F 113 G LT+ L A KV+ E D + P+L+D S +PN ++II D LK D F Sbjct: 61 IGALTEQLAK-KADKVVAFEIDGRLIPVLEDTLSAYPN-VKIIHSDVLKADLPGVLDAEF 118 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + I ++ANLPY + T +L + ++S+T++ Q EV ERI A+ S YG Sbjct: 119 SKGQAIHVVANLPYYVTTPILMKLLEDRLP---FKSITVMIQAEVAERIAAKPGSKEYGA 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231 LS+ + +A M + VF P P+V S+V+ P+ ++ + +F Sbjct: 176 LSIAAQYYAEAKPMVVVPASVFVPQPRVDSSVLKLTIREKPLVEVIDERWFFNVFHASFA 235 Query: 232 KRRKTLRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RRKT+ +L + E L +AGI+ R E LS ++F R+++ L Sbjct: 236 NRRKTILNNLVHNLAGKDAKAAIEQALSEAGIDPKRRGETLSPQEFARLSDALYS 290 >gi|260437839|ref|ZP_05791655.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876] gi|292809864|gb|EFF69069.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876] Length = 287 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 148/291 (50%), Gaps = 19/291 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++N +++L +++ ++ +K GQNFL+D I+ KI +G V+EIG G G Sbjct: 1 MYLSNPTNTL-AVINKHEFAFQKKFGQNFLIDEGIVNKIVREAGVTKDDFVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ+L A V +E D PILK+ +++ N + II +D LKVD +K N Sbjct: 60 MTQLLCEQ-AGGVAAVEIDTNLIPILKETLAEYDN-VTIINEDILKVDIKKLAEEKNGGK 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 118 PIKVVANLPYYITTPIIMGLFESNVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLA 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + +K ++ ++ P F P P V S VI + P + + K+ + +F +RRK Sbjct: 175 VQYYSKPQVVINVPPECFIPRPNVGSAVIRLTRYKEPPVKVKDEKLMFKLIRASFNQRRK 234 Query: 236 TLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL + + + ++R E L++ +F +++ ++ Sbjct: 235 TLANGLNNSPEINFSKEEITAAIESLHKGPSIRGEALTLSEFAALSDYFSN 285 >gi|253752653|ref|YP_003025794.1| dimethyladenosine transferase [Streptococcus suis SC84] gi|253754479|ref|YP_003027620.1| dimethyladenosine transferase [Streptococcus suis P1/7] gi|253756412|ref|YP_003029552.1| dimethyladenosine transferase [Streptococcus suis BM407] gi|251816942|emb|CAZ52591.1| dimethyladenosine transferase [Streptococcus suis SC84] gi|251818876|emb|CAZ56719.1| dimethyladenosine transferase [Streptococcus suis BM407] gi|251820725|emb|CAR47487.1| dimethyladenosine transferase [Streptococcus suis P1/7] Length = 290 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D + N + ++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTSILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A +E ++R E LS+ DF R+++ L + Sbjct: 235 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287 >gi|255657480|ref|ZP_05402889.1| dimethyladenosine transferase [Clostridium difficile QCD-23m63] gi|296449075|ref|ZP_06890865.1| dimethyladenosine transferase [Clostridium difficile NAP08] gi|296879898|ref|ZP_06903871.1| dimethyladenosine transferase [Clostridium difficile NAP07] gi|296262168|gb|EFH08973.1| dimethyladenosine transferase [Clostridium difficile NAP08] gi|296429187|gb|EFH15061.1| dimethyladenosine transferase [Clostridium difficile NAP07] Length = 289 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 95/287 (33%), Positives = 144/287 (50%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ K ++ Y K +GQNFL+D NI+ KI + G +IE+G G G Sbjct: 1 MDRLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITGGDNIIEVGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ + + A KV+ IE D+ PILKD S N E++ D LKVD ++ Sbjct: 61 LTREMGKI-AEKVVAIEIDRNLIPILKDTLSDLENT-EVVNQDILKVDIQELVKDKLNGG 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ ++ D + ++ QKEV +R+ A + YG LS+ Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAIPGTKDYGALSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235 + ++ H+F P P V STVI H E K + +FG+RRK Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEEIFFKTVKASFGQRRK 235 Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL SL LG +L +A I+ R E LSIE+F ++NI+ Sbjct: 236 TLLNSLGGLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282 >gi|332686219|ref|YP_004455993.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311] gi|332370228|dbj|BAK21184.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311] Length = 294 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 142/285 (49%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL Y KK +GQNFL + NILKKI ++ + VIE+G G G LT+ L Sbjct: 10 PSRTKEILKKYDFSLKKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A +V+ E D IL D + N + I+ D LK D + F + PI+I+ Sbjct: 70 QQ-AGQVLAFEIDHNLIRILADTLQPY-NNITIVNQDVLKTDLVKETQAVFQQAYPIKIV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L ++ +D E + ++ QKEV +RI+A+ + YG LS+ + Sbjct: 128 ANLPYYITTPILMYFLQSDL---IVEEMVVMMQKEVADRISAKPGTKAYGSLSIAVQYFM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +AT+ F + VF P P V S VI PI + K+T+ AF RRKTL + Sbjct: 185 EATIAFIVPKTVFVPQPNVDSAVIKLTRRSKPIVDVINEKEFFKLTRAAFQLRRKTLWNN 244 Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNIL 276 L G+ L QA I + R E LS+ +F R++N L Sbjct: 245 LLHFYGKEESTKQWLIKSLEQAEIVASRRGETLSLAEFARLSNSL 289 >gi|16077110|ref|NP_387923.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. 168] gi|221307851|ref|ZP_03589698.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. 168] gi|221312173|ref|ZP_03593978.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317106|ref|ZP_03598400.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321369|ref|ZP_03602663.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis str. SMY] gi|585375|sp|P37468|RSMA_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|467431|dbj|BAA05277.1| high level kasgamycin resistance [Bacillus subtilis] gi|2632309|emb|CAB11818.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis subsp. subtilis str. 168] gi|291482413|dbj|BAI83488.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto BEST195] Length = 292 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL +I + + + VIEIG G G LT+ L Sbjct: 11 TKEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV+ E DQ+ PILKD S + N + +I D LK D E+ F I ++ANL Sbjct: 70 AKKVVAFEIDQRLLPILKDTLSPYEN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS--- 240 + + VF P P V S VI I P ++ + +F +RRKTL + Sbjct: 186 TVMIVPKTVFVPQPNVDSAVIRLILRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVN 245 Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ E +L + I+ R E+LSIE+F ++N L Sbjct: 246 NLPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSNGLY 288 >gi|46906420|ref|YP_012809.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b str. F2365] gi|226222817|ref|YP_002756924.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria monocytogenes Clip81459] gi|254853694|ref|ZP_05243042.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503] gi|254933027|ref|ZP_05266386.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262] gi|254992659|ref|ZP_05274849.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-064] gi|255519705|ref|ZP_05386942.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-175] gi|300764931|ref|ZP_07074920.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017] gi|62900545|sp|Q724M5|RSMA_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|259494253|sp|C1KYC1|RSMA_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|46879684|gb|AAT02986.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b str. F2365] gi|225875279|emb|CAS03976.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607073|gb|EEW19681.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503] gi|293584586|gb|EFF96618.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262] gi|300514418|gb|EFK41476.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017] gi|328469720|gb|EGF40642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Listeria monocytogenes 220] gi|332310597|gb|EGJ23692.1| Ribosomal RNA small subunit methyltransferase A [Listeria monocytogenes str. Scott A] Length = 295 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|154684561|ref|YP_001419722.1| dimethyladenosine transferase [Bacillus amyloliquefaciens FZB42] gi|154350412|gb|ABS72491.1| KsgA [Bacillus amyloliquefaciens FZB42] Length = 293 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 144/293 (49%), Gaps = 24/293 (8%) Query: 3 MNNK----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MNNK K IL Y KK +GQNFL+D NIL +I + + D VIEIG G Sbjct: 1 MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114 G LT+ L A+KV+ E DQ+ PIL D S + N + II D LK D E+ F Sbjct: 61 GALTEQLAKR-AKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVKSVIEEQFQ 118 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I + ANLPY + T ++ + + + ++ QKEV ER+ A +S YG L Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 S+ + T+A + + VF P P V S VI + P ++ + +F + Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNEPFFFQLIKASFAQ 235 Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKTL +L K+ E +L + I+ R E+LSIE+F ++N L Sbjct: 236 RRKTLLNNLVNNLPGGKEKKAQIEEVLQETNIDGKRRGESLSIEEFALLSNGL 288 >gi|321313712|ref|YP_004205999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus subtilis BSn5] gi|320019986|gb|ADV94972.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus subtilis BSn5] Length = 292 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL +I + + + VIEIG G G LT+ L Sbjct: 11 TKEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV+ E DQ+ PILKD S + N + +I D LK D E+ F I ++ANL Sbjct: 70 AKKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS--- 240 + + VF P P V S VI + P ++ + +F +RRKTL + Sbjct: 186 TVMIVPKTVFVPQPNVDSAVIRLVLRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVN 245 Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ E +L + I+ R E+LSIE+F ++N L Sbjct: 246 NLPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSNGLY 288 >gi|254480940|ref|ZP_05094186.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2148] gi|214038735|gb|EEB79396.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2148] Length = 264 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K GQNFL D +++ IA + S + ++EIG G G LT+ L++ G ++ VIE Sbjct: 7 QHAPRKRFGQNFLTDDSVIGGIAGAIASRESDHIVEIGPGQGALTEALVSSGC-QLDVIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L S H ++ DALK DF + +RI+ NLPYNI T L+F Sbjct: 66 LDRDLIAGLLAAFSIHKG-FKLHSADALKFDFSSLVDGDKKLRIVGNLPYNISTPLIFKL 124 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + E + + Q EV ER+ AQ + +GRL ++T ++ + +FD+ P F P Sbjct: 125 LENAA---IIEDMHFMLQLEVVERLAAQPGNKTWGRLGIMTQYQCEVEHLFDVPPEAFNP 181 Query: 198 SPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ P+ P P C L+K+ Q AF +RRKTLR +LK L + L GI Sbjct: 182 PPKVQSAIVRLKPYQQSPWPACDGNQLRKVVQTAFAQRRKTLRNNLKGLINGDGLEALGI 241 Query: 256 ETNLRAENLSIEDFCRITNI 275 + RAE L + F ITN Sbjct: 242 DPAARAETLQLTQFITITNA 261 >gi|311028973|ref|ZP_07707063.1| dimethyladenosine transferase [Bacillus sp. m3-13] Length = 296 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 139/285 (48%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL Y KK +GQNFL+D NIL+ I E + IEIG G G LT+ + Sbjct: 8 PKRTKEILDKYGFSFKKSLGQNFLIDTNILRNIVEYGEVSEKTAAIEIGPGIGALTEQIA 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122 A KV E DQ+ PIL+D S + N + +I D LK D + +R+I Sbjct: 68 KR-AGKVFAFEIDQRLLPILEDTLSPYDN-VTVIHKDILKADVTELIGEELKAYEEVRVI 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + +S+T++ QKEV ER+ A+ + YG LS+ + T Sbjct: 126 ANLPYYVTTPIIMKLLQEGLP---LKSITVMLQKEVAERMAAKPGTKEYGSLSIAVQYFT 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A + + VF P P V S VI + P + ++ + +FG+RRKT+ + Sbjct: 183 QAETVMIVPKTVFVPQPNVDSAVIRLVVREEPPVRVKDEDFFFEVVRASFGQRRKTILNN 242 Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L K+ G E L I+ R E LSIE+F +++ L Sbjct: 243 LQSNLPDGKAKKQGIEAALATTSIDPKRRGETLSIEEFGALSDEL 287 >gi|146319655|ref|YP_001199367.1| dimethyladenosine transferase [Streptococcus suis 05ZYH33] gi|146321852|ref|YP_001201563.1| dimethyladenosine transferase [Streptococcus suis 98HAH33] gi|145690461|gb|ABP90967.1| Dimethyladenosine transferase [Streptococcus suis 05ZYH33] gi|145692658|gb|ABP93163.1| Dimethyladenosine transferase [Streptococcus suis 98HAH33] gi|292559272|gb|ADE32273.1| Dimethyladenosine transferase [Streptococcus suis GZ1] Length = 302 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 13 MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 71 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D + N + ++ D LK D + F N Sbjct: 72 LTEFLAENAA-EVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 129 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + + ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 130 LPIKVVANLPYYITTSILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 186 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 187 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 246 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A +E ++R E LS+ DF R+++ L + Sbjct: 247 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 299 >gi|325264298|ref|ZP_08131029.1| dimethyladenosine transferase [Clostridium sp. D5] gi|324030369|gb|EGB91653.1| dimethyladenosine transferase [Clostridium sp. D5] Length = 303 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 19/289 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 14 TLGNPQNTI-AVLHRYNFAFQKKFGQNFLIDTHVLDKIIRSAEISRDDMVLEIGPGIGTM 72 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L A KVI +E D+ PIL+D N + ++ +D LKVD + N P Sbjct: 73 TQYLAC-AAGKVIAVEIDRALIPILEDTLDGFDN-VTVLNEDILKVDIAELAERENGGRP 130 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ +S+T++ QKEV ER+ + YG LS+ Sbjct: 131 IKVVANLPYYITTPIIMGLFEKHVP---VKSITVMVQKEVAERMQVGPGTKDYGALSLAV 187 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI + P + + +I + +F +RRKT Sbjct: 188 QYYAKPYIVANVPPNCFMPRPKVGSAVICLERYEKPPVQVDDERLMFRIIRASFNQRRKT 247 Query: 237 LRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L +K E + G +R E L++E+F +TN L+ Sbjct: 248 LANGMKNSPELDYTKEQIEAAIESLGRGAGVRGEALTLEEFAALTNALS 296 >gi|301299614|ref|ZP_07205875.1| dimethyladenosine transferase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852801|gb|EFK80424.1| dimethyladenosine transferase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 297 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 21/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + I+ Y + KK +GQNFL D+NILK I ++ + VIEIG G G LT Sbjct: 9 IANPTRT-RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALT 67 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118 + L A KV+ +E D + P+L D S + N +E+I D LK D E F Sbjct: 68 EQLAKR-ANKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHK 125 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T +L + + + +E++ ++ QKEV ER+ A + YG LSV Sbjct: 126 LKLVANLPYYITTPILMHLLDSGI---EFETIVVMMQKEVAERLAANSGTKAYGSLSVAV 182 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKT 236 + + + F + VF P P V S +I P + KK+ + +F RRK+ Sbjct: 183 QYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKS 242 Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277 L +L+ L G++ L A I+ ++RAE L++ DF +++ L Sbjct: 243 LWNNLQSLYGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALE 292 >gi|229542292|ref|ZP_04431352.1| dimethyladenosine transferase [Bacillus coagulans 36D1] gi|229326712|gb|EEN92387.1| dimethyladenosine transferase [Bacillus coagulans 36D1] Length = 295 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 146/282 (51%), Gaps = 20/282 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL+ Y KK +GQNFL+D NIL+ I +++ + V+EIG G G LT+ L Sbjct: 11 TKAILNRYGFSFKKSLGQNFLIDPNILRNITDTADLTEESGVVEIGPGIGALTEHLARR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANL 125 ++KV+ E D++ PILKD + +PN + +I +D LK D K + I ++ANL Sbjct: 70 SKKVVAFEIDKRLAPILKDTLAPYPN-VNVIYEDVLKADVGKVLETEFAGINDIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ +++ + ++ QKEV +RI+A + +YG LS+ + A Sbjct: 129 PYYVTTPIILKFVTGLYP---IRGMVVMLQKEVADRISAVPGTKNYGTLSIAIQYYMTAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S V+ + P + ++ + +F +RRKTL +L Sbjct: 186 VAMIVPKTVFMPQPNVDSAVVKLVKRDKPKVEVKDEAFFFQVAKASFAQRRKTLINNLTA 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K+ ++L Q IE + R E LS+E+F ++N L Sbjct: 246 GLPGGKDKKETLLSVLEQLKIEPSRRGETLSLEEFAALSNAL 287 >gi|308171933|ref|YP_003918638.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus amyloliquefaciens DSM 7] gi|307604797|emb|CBI41168.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus amyloliquefaciens DSM 7] gi|328551743|gb|AEB22235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Bacillus amyloliquefaciens TA208] gi|328910003|gb|AEB61599.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus amyloliquefaciens LL3] Length = 293 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 144/294 (48%), Gaps = 24/294 (8%) Query: 3 MNNK----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MNNK K IL Y KK +GQNFL+D NIL +I + + D VIEIG G Sbjct: 1 MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114 G LT+ L A+KV+ E DQ+ PIL D S + N + II D LK D E+ F Sbjct: 61 GALTEQLAKR-AKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHHDVLKADVKSVIEEQFQ 118 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I + ANLPY + T ++ + + + ++ QKEV ER+ A +S YG L Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 S+ + T+A + + VF P P V S VI + P ++ + +F + Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNESFFFQLIKASFAQ 235 Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 RRKTL +L K+ E +L + I+ R E+LSIE+F ++N L Sbjct: 236 RRKTLLNNLVNNLPGGKEKKPQIEEVLQETNIDGKRRGESLSIEEFALLSNGLY 289 >gi|90961211|ref|YP_535127.1| dimethyladenosine transferase [Lactobacillus salivarius UCC118] gi|119365028|sp|Q1WV73|RSMA_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|90820405|gb|ABD99044.1| Dimethyladenosine transferase [Lactobacillus salivarius UCC118] gi|300214137|gb|ADJ78553.1| Ribosomal RNA small subunit methyltransferase A (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S ribosomal RNA dimethyladenosine transferase) (16S ribosomal RNA dimethylase) [Lactobacillus salivarius CECT 5713] Length = 296 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 150/289 (51%), Gaps = 21/289 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + I+ Y + KK +GQNFL D+NILK I ++ + VIEIG G G LT Sbjct: 8 IANPTRT-RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALT 66 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSP 118 + L A KV+ +E D + P+L D S + N +E++ D LK D + F Sbjct: 67 EQLAKR-ANKVMALEIDDRLLPVLADTLSPYEN-VEVVHQDILKADLKALIAEHFEPGHK 124 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T +L + + + +E++ ++ QKEV ER+ A + YG LSV Sbjct: 125 LKLVANLPYYITTPILMHLLDSGI---EFETIVVMMQKEVAERLAANPGTKAYGSLSVAV 181 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKT 236 + + + F + VF P P V S +I P + KK+ + +F RRK+ Sbjct: 182 QYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKS 241 Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 L +L+ L G++ L A I+ ++RAE L++ DF +++ L Sbjct: 242 LWNNLQSLYGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDAL 290 >gi|326804008|ref|YP_004321826.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a] gi|326650269|gb|AEA00452.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a] Length = 294 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 146/282 (51%), Gaps = 20/282 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL+ Y++ KK +GQNFL++ IL+K+ +++ VIEIG G G LT+ L A Sbjct: 14 AILNRYQLDAKKSLGQNFLMEPQILEKMVDAADIDQDTDVIEIGPGIGALTEFLCES-AG 72 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127 +V+ E D + P+L+ + N L ++ D L+ D ++F S + ++ANLPY Sbjct: 73 RVLAFEVDDRLLPVLEAELGHYDN-LTVLHQDILEADLNASVSQYFPDSKRLAVVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++F+++ +D + + Q EV ER+TAQ + Y L+++ + ++ + Sbjct: 132 YITTPIIFHFLESDLEVSDFALM---MQYEVAERLTAQAGTKAYSALTIVLNYYCQSEIA 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + VF P PKV S V+H P P K+ + AF RRKTL +LK L Sbjct: 189 VKVPKTVFKPRPKVDSAVLHLKRRQAPPVKPQNEALFFKVVKGAFAHRRKTLWNNLKSLF 248 Query: 246 G---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E + AGI+ +RAE L+IEDF +++ L + Sbjct: 249 AGQYQEPSDLEAAIEAAGIDPKVRAEQLTIEDFSHLSDALNE 290 >gi|86516031|gb|ABC97666.1| KsgA [Shigella boydii] Length = 256 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ Sbjct: 1 RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175 Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ +PH P P + L +IT EAF +RRKT+R SL L +L + GI+ +R Sbjct: 176 SAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSAEVLTEMGIDPAMR 235 Query: 261 AENLSIEDFCRITNILTDN 279 AEN+S+ +C++ N L +N Sbjct: 236 AENISVAQYCQMANYLAEN 254 >gi|323340527|ref|ZP_08080782.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644] gi|323092071|gb|EFZ34688.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644] Length = 296 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 155/299 (51%), Gaps = 26/299 (8%) Query: 3 MNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56 M+N+ + + I+ Y + KK +GQNFL DLNILKKI ++ + VIEIG Sbjct: 1 MSNELPEIASKARTRAIMETYGLTFKKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGP 60 Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---- 112 G G LT+ L A +V+ +E D + P+L + S + N ++I++ D LK D ++ Sbjct: 61 GIGALTEQLAKS-AHQVMALEIDSRLIPVLSETLSPYDN-VKIVEQDVLKADLKELIAQN 118 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F+ I+++ANLPY I T ++ + + D +E++ ++ QKEV +R+ AQ + YG Sbjct: 119 FDGRHKIKLVANLPYYITTPIVMHLLEVDV---DFETIVVMMQKEVADRLAAQPGTKDYG 175 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAF 230 LSV + A + F + VF P PKV S +I +P KK+ + F Sbjct: 176 SLSVAVQYEMDAKIAFIVPKTVFMPQPKVDSAIIALNRKDEKPDVPVDEPFFKKMVKGIF 235 Query: 231 GKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RRK+L +L+ L G++ L A IE ++RAE LSI R+ + L + Sbjct: 236 LHRRKSLWNNLQGLYGKDPSTREKLEHALKNAEIEKSVRAERLSISQMVRLADNLFAEK 294 >gi|310825990|ref|YP_003958347.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612] gi|308737724|gb|ADO35384.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612] Length = 285 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 16/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ IL+ Y + K GQNFL+D NI++KI E+ TV+EIG G G Sbjct: 1 MEKLTSPKVIEGILNKYDLHFNKRYGQNFLIDENIVRKIVEAGNVHKNDTVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 +TQ+L A KV +E D++ P+L N +EIIQ D LK D + Sbjct: 61 MTQVLAE-AAGKVYSVEIDKKLIPVLAKTLEDC-NNVEIIQGDILKTDIPGLLRTNLQKN 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++I+ANLPY + T ++ ++ ++ E +T + QKEVGER+ A+ + YG L++ Sbjct: 119 PLKIVANLPYYVTTPIIMGFLESELP---IEQMTFMIQKEVGERLCAEPGTKAYGSLTIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235 + + + F + VF P PKV S V+ P + +I + +F RRK Sbjct: 176 AQFYAETEISFYVPAAVFMPRPKVDSIVVTLKKRAEPAIRVSDKKLFFQIVKASFLNRRK 235 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL L+ N L + GI +R E L+ EDF R+ N L+ Sbjct: 236 TLINGLQMNTDYSKERLLNALEKCGIAPGVRGETLTGEDFARLANTLS 283 >gi|212637885|ref|YP_002314405.1| dimethyladenosine transferase [Anoxybacillus flavithermus WK1] gi|226729751|sp|B7GFH0|RSMA_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|212559365|gb|ACJ32420.1| Dimethyladenosine transferase (rRNA methylation) [Anoxybacillus flavithermus WK1] Length = 295 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 20/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL Y KK +GQNFL++ NIL +I + + + VIEIG G G LT+ L Sbjct: 8 PTRTKEILEKYGFSFKKSLGQNFLIEPNILHRIVDFAQLSERTGVIEIGPGIGALTEQLA 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRII 122 A+KV+ E DQ+ PIL D S + N + II +D LK D ++ F I ++ Sbjct: 68 RR-AKKVVAFEIDQRLLPILADTLSPYTN-VSIIHEDILKADVQQVIAEQFTDVDDIMVV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ ++ + ++ QKEV +R+ A+ + YG L++ + T Sbjct: 126 ANLPYYVTTPIIMKLLTDRLP---IRGMVVMLQKEVADRMAAKPGTKDYGSLTIAVQYYT 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 A + + VF P P V S VI + P + + + +FG+RRKT+ + Sbjct: 183 HAETVMHVPRTVFVPKPNVDSAVIRLLKREQPAVSVSNEDFFFAVVRASFGQRRKTILNN 242 Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L K+ EN L AGI+ R E L+I +F ++ L Sbjct: 243 LLNQLPNGKEKKEQIENALANAGIDPKRRGETLAIAEFATLSEQLY 288 >gi|126701147|ref|YP_001090044.1| dimethyladenosine transferase [Clostridium difficile 630] gi|254977148|ref|ZP_05273620.1| dimethyladenosine transferase [Clostridium difficile QCD-66c26] gi|255094477|ref|ZP_05323955.1| dimethyladenosine transferase [Clostridium difficile CIP 107932] gi|255316228|ref|ZP_05357811.1| dimethyladenosine transferase [Clostridium difficile QCD-76w55] gi|255518890|ref|ZP_05386566.1| dimethyladenosine transferase [Clostridium difficile QCD-97b34] gi|255652069|ref|ZP_05398971.1| dimethyladenosine transferase [Clostridium difficile QCD-37x79] gi|260685043|ref|YP_003216328.1| dimethyladenosine transferase [Clostridium difficile CD196] gi|260688701|ref|YP_003219835.1| dimethyladenosine transferase [Clostridium difficile R20291] gi|306521805|ref|ZP_07408152.1| dimethyladenosine transferase [Clostridium difficile QCD-32g58] gi|118600854|sp|Q181C1|RSMA_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115252584|emb|CAJ70427.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) [Clostridium difficile] gi|260211206|emb|CBA66699.1| dimethyladenosine transferase [Clostridium difficile CD196] gi|260214718|emb|CBE07385.1| dimethyladenosine transferase [Clostridium difficile R20291] Length = 289 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 144/287 (50%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ K ++ Y K +GQNFL+D NI+ KI + G +IE+G G G Sbjct: 1 MDRLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ + + A KV+ IE D+ PILKD S N E++ D LKVD ++ Sbjct: 61 LTREMGKI-AEKVVAIEIDRNLIPILKDTLSDLDNT-EVVNQDILKVDIQELVKDKLNGG 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ ++ D + ++ QKEV +R+ A + YG LS+ Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAIPGTKDYGALSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235 + ++ H+F P P V STVI H + K + +FG+RRK Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRK 235 Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL SL LG +L +A I+ R E LSIE+F ++NI+ Sbjct: 236 TLLNSLGGLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282 >gi|255102733|ref|ZP_05331710.1| dimethyladenosine transferase [Clostridium difficile QCD-63q42] gi|255308554|ref|ZP_05352725.1| dimethyladenosine transferase [Clostridium difficile ATCC 43255] Length = 289 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 144/287 (50%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ K ++ Y K +GQNFL+D NI+ KI + G +IE+G G G Sbjct: 1 MDRLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ + + A KV+ IE D+ PILKD S N E++ D LKVD ++ Sbjct: 61 LTREMGKI-AEKVVAIEIDRNLIPILKDTLSDLDNT-EVVNQDILKVDIQELVKDKLNGG 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ ++ D + ++ QKEV +R+ A + YG LS+ Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAIPGTKDYGALSIA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235 + ++ H+F P P V STVI H + K + +FG+RRK Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRK 235 Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL SL LG +L +A I+ R E LSIE+F ++NI+ Sbjct: 236 TLLNSLGGLGFLNKDEIREVLKEANIDEKRRGETLSIEEFSVLSNII 282 >gi|149182822|ref|ZP_01861284.1| dimethyladenosine transferase [Bacillus sp. SG-1] gi|148849489|gb|EDL63677.1| dimethyladenosine transferase [Bacillus sp. SG-1] Length = 292 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 20/282 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL+ I E +G + IEIG G G LT+ L Sbjct: 11 TKEILKKYGFSFKKSLGQNFLIDPNILRNITEYAGLTEKTAAIEIGPGIGALTEHLART- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A KV+ E DQ+ PIL D S + N + I+ +D LK D EK I ++ANL Sbjct: 70 AGKVLAFEIDQRLLPILADTLSPY-NNITIVNEDVLKADVQEMIEKELADYEDIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ ++ + + ++ QKEVG+RI A+ + YG LS+ + T A Sbjct: 129 PYYVTTPIILKLLTEGLP---IKGICVMLQKEVGDRIAAKPGTKEYGSLSIAIQYYTTAE 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + VF P P V S VI + P + K+T+ +F +RRKT+ +L Sbjct: 186 TVMIVPKTVFMPQPNVDSAVIRLMKRDKPAAEVDDEDFFFKVTRASFAQRRKTILNNLTS 245 Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L +AG++ R E LSI++F ++N L Sbjct: 246 QLPDGKQKKEEILASLEKAGVDPGRRGETLSIQEFALLSNEL 287 >gi|314937300|ref|ZP_07844642.1| dimethyladenosine transferase [Staphylococcus hominis subsp. hominis C80] gi|313654596|gb|EFS18346.1| dimethyladenosine transferase [Staphylococcus hominis subsp. hominis C80] Length = 296 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K +L+ + KK +GQNFL+D+NI+ KI ++S +IE+G G G+LT+ L Sbjct: 9 PSRTKELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 A+KV+ E DQ+ P+LK+ + N + II +D LK D + N I ++ Sbjct: 69 KS-AKKVLSFEIDQRLIPVLKETLHPYDN-VTIINEDILKADIATAVNMYLNDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ + YG LS++T + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ ++ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L A I+ R E LSI+DF R+ Sbjct: 244 YQNFFKDGKKYKSQIHQWLENANIDPKRRGETLSIQDFARLYE 286 >gi|53805073|ref|YP_113120.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath] gi|62900497|sp|Q60B77|RSMA_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53758834|gb|AAU93125.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath] Length = 257 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 95/260 (36%), Positives = 138/260 (53%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +P+K GQNFL D ++++I + G ++EIG G G LT+ LL GA + IE Sbjct: 2 RHVPRKRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGA-CLEAIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ LK + RL I + DA+K D +R++ NLPYNI T LLF+ Sbjct: 61 LDRDLVAALKRRFAGV-GRLRIHEGDAMKFDLRTIAT-GERLRVVGNLPYNISTPLLFHL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 E + + QKEV +R+ A HYGRLSV+ +A +FD+ P F P Sbjct: 119 FDQ---IDVIEDMHFMLQKEVVDRLCAGAGDDHYGRLSVMAALYCQAQHLFDVGPECFHP 175 Query: 198 SPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +PH P ++ + + AFG+RRKTLR +LK L E + +AGI+ Sbjct: 176 QPKVVSAVVRLVPHAVPPDAGMVKQVSAVVVAAFGQRRKTLRNALKGLLDETAMVRAGID 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE LS+ D+ ++ L Sbjct: 236 PGARAEELSLADYVGLSRQL 255 >gi|312870255|ref|ZP_07730386.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3] gi|311094278|gb|EFQ52591.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3] Length = 297 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 22/292 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + I+ Y I KK GQNFL DLN+LK I ++ VIEIG G G LT+ L Sbjct: 9 SRTRTRAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEITRDDNVIEIGPGIGALTEQL 68 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120 A +V+ +E DQ P+L ++ + + N + ++ D L+ + + + S PI+ Sbjct: 69 A-QAAGEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFTDPSRPIK 126 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I + +L N ++A P W ++ ++ QKEV +R+TAQ + YG L++ + Sbjct: 127 VVANLPYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEY 183 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237 + A + F++S VF P+P V S ++ P P+P + L + F RRK+L Sbjct: 184 QMTAEIAFNVSRRVFVPAPNVDSAIVVLRPRTTPLPVQPFNKQKLFGFIRGCFAHRRKSL 243 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L+ G+ +L I R E L++E F + N L Q Sbjct: 244 WNNLQATVGKQPAVKEKMQAILTTLAISPQTRPERLTLEQFIELANALHAAQ 295 >gi|149907524|ref|ZP_01896271.1| dimethyladenosine transferase [Moritella sp. PE36] gi|149809194|gb|EDM69123.1| dimethyladenosine transferase [Moritella sp. PE36] Length = 272 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 15/279 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+K H KK GQNFL D ++ +I S G +IEIG G G LT Sbjct: 1 MNDKVH--------LGHTAKKRFGQNFLHDAYVIGQIVASINPRKGENLIEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + K+ V+E D+ L + +LEI Q DA++ DF++ + +RI Sbjct: 53 EPVAD-CLDKMTVVELDRDLAERL-EQHPVLSKKLEIHQADAMRFDFKQLIKPNMKMRIF 110 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI T L+F+ + + + QKEV +R+ A N+ YGRL+V+T + Sbjct: 111 GNLPYNISTPLMFHLFEFHE---DIQDMHFMLQKEVVQRLAASHNTKSYGRLTVMTQYYC 167 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240 + T + ++ P F P+PKV S V+ PH L+ L + + AF +RRKT+R S Sbjct: 168 RVTPVLEVGPEAFRPAPKVDSAVVRLEPHTVLPHPAKSLKVLNHVVRNAFNQRRKTIRNS 227 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 LK++ + + GI +LR ENL++E++ I N +TDN Sbjct: 228 LKKVISVDDIAALGINVSLRPENLTLENYVTIANFVTDN 266 >gi|228476220|ref|ZP_04060923.1| dimethyladenosine transferase [Staphylococcus hominis SK119] gi|228269705|gb|EEK11204.1| dimethyladenosine transferase [Staphylococcus hominis SK119] Length = 296 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K +L+ + KK +GQNFL+D+NI+ KI ++S +IE+G G G+LT+ L Sbjct: 9 PSRTKELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 A+KV+ E DQ+ P+LK+ + N + II +D LK D + N I ++ Sbjct: 69 KS-AKKVLSFEIDQRLIPVLKETLHPYDN-VTIINEDILKADIATAVNMYLNDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ + YG LS++T + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ ++ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L A I+ R E LSI+DF R+ Sbjct: 244 YQNFFKDGKKYKSKIHQWLENADIDPKRRGETLSIQDFARLYE 286 >gi|284803073|ref|YP_003414938.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578] gi|284996214|ref|YP_003417982.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923] gi|284058635|gb|ADB69576.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578] gi|284061681|gb|ADB72620.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923] Length = 295 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-TN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290 >gi|300310043|ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Herbaspirillum seropedicae SmR1] gi|300072828|gb|ADJ62227.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 94/264 (35%), Positives = 133/264 (50%), Gaps = 7/264 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +L I S ++EIG G +T +LL G R + V+E Sbjct: 2 KHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLE-GLRHLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136 D+ LK RL + DALK DF +R++ NLPYNI + LLF+ Sbjct: 61 LDRDLVERLKKRFDAA--RLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P + + QKEV ER+ A+ S YGRLSV+ WR ++F + P F Sbjct: 119 L---AEIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P PKV S ++ IP P+ C L+++ +AF +RRK +R + L E+ L Q GI+ Sbjct: 176 PPPKVDSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGID 235 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 R E + +E F + N+L Q Sbjct: 236 PQARPEAVPMEQFVALANLLAARQ 259 >gi|313625508|gb|EFR95235.1| dimethyladenosine transferase [Listeria innocua FSL J1-023] Length = 295 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N + ++ +D LK D E+F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKEELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|16799304|ref|NP_469572.1| dimethyladenosine transferase [Listeria innocua Clip11262] gi|27151588|sp|Q92F79|RSMA_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|16412646|emb|CAC95460.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria innocua Clip11262] Length = 295 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N + ++ +D LK D E+F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ E ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L+ GI+ R E L I +F +++N L D Sbjct: 248 FPALKPRKEELIEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290 >gi|224475635|ref|YP_002633241.1| dimethyladenosine transferase [Staphylococcus carnosus subsp. carnosus TM300] gi|254807884|sp|B9DLD0|RSMA_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|222420242|emb|CAL27056.1| ribosomal RNA adenine dimethylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 296 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 149/286 (52%), Gaps = 20/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y+ KK +GQNFL+D+NI++KI ++S + VIE+G G G+LT+ L Sbjct: 9 PTRTRALLDKYQFDFKKSLGQNFLIDVNIIQKIIDASNIDERTGVIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 A+KV+ E DQ+ P+L+D S + N + +I +D LK D + + I ++ Sbjct: 69 KH-AKKVVAFEIDQRLIPVLEDTLSDYDN-VTVINEDILKADVVEAVQTHLSDCDKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N +S + ++ QKEVGER+ A+ + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMSKSLP---IDGYVVMMQKEVGERLNAEIGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + PI + K+T+ AF +RRKT+ + Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMKRQAPIVAVDDEDQFFKMTKAAFSQRRKTIANN 243 Query: 241 LKRLG---------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + L + L GI+ R E LSI++F + N L Sbjct: 244 YQSLFFDGKQKKYIIKTWLEDGGIDPRRRGETLSIKEFANLFNNLK 289 >gi|153956353|ref|YP_001397118.1| dimethyladenosine transferase [Clostridium kluyveri DSM 555] gi|219856668|ref|YP_002473790.1| hypothetical protein CKR_3325 [Clostridium kluyveri NBRC 12016] gi|146349211|gb|EDK35747.1| KsgA [Clostridium kluyveri DSM 555] gi|219570392|dbj|BAH08376.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 281 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 102/283 (36%), Positives = 150/283 (53%), Gaps = 14/283 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN S K I+ Y K +GQNFL+D ++L+ I E + VIEIG G G LT Sbjct: 1 MNNL--STKEIVEKYNFRFSKNLGQNFLIDNSVLQDILEGTDINKNDFVIEIGPGVGTLT 58 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A+KV IE D ILK+ +PN E+I D LK +F + S I+I+ Sbjct: 59 KELLKR-AKKVCAIELDSDLIAILKEELKHYPN-FELIHKDVLKTNFNEIIKDESSIKIV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ ++ +++LT++ QKEVGER+ ++ N YG LS+L + Sbjct: 117 ANLPYYITTPIISKILNNKYN---FKTLTIMIQKEVGERMISEPNCKRYGALSLLVQYYC 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240 ++ +SP+ F PSPKV S VI NP + +I + +F RRKTL + Sbjct: 174 DVEVLRKVSPYAFIPSPKVESIVIKLTKLNNPRVKIKSEDLFFRIIRCSFNMRRKTLWNA 233 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L E ++ I+ R E LSIE+F +++ + + Sbjct: 234 LKALKLSREYIEKAFDKSRIDPKRRGETLSIEEFGLLSDCIYE 276 >gi|331092538|ref|ZP_08341360.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330400759|gb|EGG80362.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 292 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 146/291 (50%), Gaps = 19/291 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ IL Y+ +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 7 TLGNPQNTI-EILQKYQFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 65 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V+ +E D+ PIL D S N + II +D LKVD N P Sbjct: 66 TQYLA-SAAREVVAVEIDKALIPILSDTLSGFDN-VTIINNDVLKVDIGALAQEHNNGRP 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+++ANLPY I T ++ ++ ES+T++ QKEV ER+ + YG LS+ Sbjct: 124 IKVVANLPYYITTPIIMGLFESNVP---IESITVMVQKEVAERMQVGPGTKDYGALSLAV 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236 + K ++ ++ P+ F P PKV S VI H P + + KI + +F +RRKT Sbjct: 181 QYYAKPYIVANVPPNCFMPRPKVASAVIRLERHKEPPVSVVDEKLMFKIIRASFNQRRKT 240 Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L L + + G +R E L++++F +++ ++ Sbjct: 241 LANGLNNSPEIHLPKDVITEAIKELGKGAGVRGEVLTLQEFATLSDNISKR 291 >gi|226938959|ref|YP_002794030.1| dimethyladenosine transferase [Laribacter hongkongensis HLHK9] gi|254807871|sp|C1D9C2|RSMA_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226713883|gb|ACO73021.1| KsgA [Laribacter hongkongensis HLHK9] Length = 262 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 92/259 (35%), Positives = 133/259 (51%), Gaps = 9/259 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + IPKK GQNFL D I+ I + + G V+EIG G G LT+ LL ++ V+E Sbjct: 3 RHIPKKRFGQNFLQDAFIIHSIVAAVDARPGDVVVEIGPGLGALTRPLLRALP-QLHVVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L P RL I + DAL DF + P++++ NLPYNI T LLF+ Sbjct: 62 IDRDIIARLAAEFP--PERLVIHEGDALAFDFGALAHE-QPLKLVGNLPYNISTPLLFHL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 T+ + + QKEV +R+ A YGRL+V+ +R + D+ P F P Sbjct: 119 ---ATYADRVTDMHFMLQKEVVDRMVADPGCADYGRLTVMLQYRFAMERLIDVPPESFDP 175 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ IPH P P E L + +AF +RRKTLR +L+ ++ GI Sbjct: 176 PPKVDSAVVRMIPHAELPWPADDEENLSALVAQAFAQRRKTLRNNLRGWLDDDDFAALGI 235 Query: 256 ETNLRAENLSIEDFCRITN 274 + R E L++ +F ++N Sbjct: 236 DPQRRPETLTLREFVLLSN 254 >gi|121997814|ref|YP_001002601.1| dimethyladenosine transferase [Halorhodospira halophila SL1] gi|166221671|sp|A1WVT7|RSMA_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121589219|gb|ABM61799.1| dimethyladenosine transferase [Halorhodospira halophila SL1] Length = 265 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQNFL D +++++ + +G T++EIG G G LT+ LL + +E Sbjct: 3 HRPRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLG-TLTAVEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P L++ + L +I+ DAL +D + +R++ NLPYN+ T +LF+ + Sbjct: 62 DRDLAPRLQERFAPA---LRVIEGDALALDPAELAPAQGRLRVVGNLPYNVSTPILFHLL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +A E L LL Q+EV +R+ A GRLSV+ +R + F++ FFP+ Sbjct: 119 AAAD---VIEDLHLLLQREVVDRMVAPPGGKTRGRLSVMVQYRCRVERCFNVPAGAFFPA 175 Query: 199 PKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S+ + +PH + L+++ AFG RRKTLR SLK L AG++ Sbjct: 176 PKVMSSFVRLVPHRPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEAAGVD 235 Query: 257 TNLRAENLSIEDFCRI 272 RAE LS+E F R+ Sbjct: 236 PGARAETLSVEAFVRL 251 >gi|311070689|ref|YP_003975612.1| dimethyladenosine transferase [Bacillus atrophaeus 1942] gi|310871206|gb|ADP34681.1| dimethyladenosine transferase [Bacillus atrophaeus 1942] Length = 292 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL +I + +G + VIEIG G G LT+ L Sbjct: 11 TKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A++V+ E DQ+ PILKD S + N + +I D LK D E+ F+ I ++ANL Sbjct: 70 AKQVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVRTVIEEQFHDCDEIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSL-- 241 + + VF P P V S VI + P ++ + +F +RRKTL +L Sbjct: 186 TVMTVPKTVFVPQPNVDSAVIRLLLREGPAVDVVNEAFFFQLIKASFAQRRKTLLNNLVN 245 Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K+ E +L + I+ R E LSI++F ++N L Sbjct: 246 NLPQGKEKKSIIEEVLKETQIDGKRRGEALSIDEFAALSNGLY 288 >gi|134093647|ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas arsenicoxydans] gi|226732588|sp|A4G256|RSMA_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|133737550|emb|CAL60593.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Herminiimonas arsenicoxydans] Length = 255 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 93/260 (35%), Positives = 136/260 (52%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +L I + T++EIG G +T++LL G ++ V+E Sbjct: 2 KHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLD-GVNQMHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136 D+ LK P +L I DAL+ DF S +R++ NLPYNI + LLF+ Sbjct: 61 LDRDLVERLKKTFD--PKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P + + QKEV ER+ A+ S YGRLSV+ WR +MF + P F Sbjct: 119 LAEMA---PHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ IP P+PC L+++ +AF +RRK +R L + E L +AGI Sbjct: 176 PPPRVESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEAGIN 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 +R E +S+ + + N L Sbjct: 236 PQMRPETISLAQYVALANRL 255 >gi|313889811|ref|ZP_07823453.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN 20026] gi|313121856|gb|EFR44953.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN 20026] Length = 290 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + IL + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL + N + +I D LK D + F N Sbjct: 60 LTEFLAEQAA-EVMAFEIDDRLLPILAETLRDFDN-IRVINQDILKADLQTQIQGFKNPE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAKPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++ + F RR Sbjct: 175 AVQYYMAAKVSFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFIHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L AGI+ N+R E L+IE+F ++ + L Sbjct: 235 KTLWNNLTSHFGKSEETKKKLEEALELAGIKANIRGEALTIEEFGKLADALKS 287 >gi|330878396|gb|EGH12545.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 268 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLGSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+E D+ PIL + PN + Q DALK DF +R++ NLPYNI T L+ Sbjct: 62 VVELDKDLIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A +GRLS++ + + +F++ P Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S ++ +P+ P P L+++ +EAF +RRKTLR +L+ L + + Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLRLLLSSDEITA 237 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 +G++ +LR E L + F R+ + L++ Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264 >gi|187927497|ref|YP_001897984.1| dimethyladenosine transferase [Ralstonia pickettii 12J] gi|309779801|ref|ZP_07674556.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA] gi|187724387|gb|ACD25552.1| dimethyladenosine transferase [Ralstonia pickettii 12J] gi|308921378|gb|EFP67020.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA] Length = 281 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 125/269 (46%), Gaps = 11/269 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + ++EIG G G LT L+ R + V Sbjct: 9 HQGHQARKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQV 67 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ +RL + DAL DF P+RI+ NLPYNI + LLF Sbjct: 68 VELDRDLVARLQQRFG---DRLIVHAGDALAFDFGSLQEAGRPLRIVGNLPYNISSPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + T+ + QKEV +R+ A S + RLSV+ R ++ D+ P F Sbjct: 125 HL---ATFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181 Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ IP P L +L + AF +RRK LR +L L Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDLRALGTVVTMAFSQRRKVLRNTLGALRDVIDFE 241 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE +S+EDF + N L N+ Sbjct: 242 ALGFDLGRRAEEVSVEDFVAVANALPANR 270 >gi|319786166|ref|YP_004145641.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1] gi|317464678|gb|ADV26410.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1] Length = 257 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 8/259 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQNFL D + +++I ++ G V+EIG G G LT LL + VIE Sbjct: 5 HTPKKSLGQNFLHDASYIERIVQAIDPRPGDRVVEIGPGQGALTLPLLRR-HGALTVIEF 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L ++++ +LEII D L+VD I++ NLPYNI + +LF+ + Sbjct: 64 DRDLVGPLAEMAAPV-GQLEIIHRDVLQVDLAALA-AGGKIKLAGNLPYNISSPILFHAL 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRLSV+ + +F + P F P+ Sbjct: 122 DHAAA---ITDMVFMLQKEVVDRMGAGPGSKVYGRLSVMLQAYCQVQPLFVVPPGAFRPA 178 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ +P + + + AFG+RRKTLR +L+ + AG+ Sbjct: 179 PKVDSAVVRLVPRDPATIHIADRDRFAHVVRAAFGQRRKTLRNALRDVCSPEQFEAAGVS 238 Query: 257 TNLRAENLSIEDFCRITNI 275 + RAE + + F R+ N Sbjct: 239 ADDRAEQVDVAGFVRLANA 257 >gi|317126783|ref|YP_004093065.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522] gi|315471731|gb|ADU28334.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522] Length = 292 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 18/283 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL Y KK +GQNFL+D N+LK+I ++ VIEIG G G LT+ L Sbjct: 9 PKKTKAILDKYGFSFKKSLGQNFLIDTNVLKRIVAAANVSQSTGVIEIGPGIGALTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRII 122 A++V+ E DQ+ PILK+ S + + +II D LK D +K F + + ++ Sbjct: 69 KE-AKRVVAFEIDQRLLPILKETLSAYEHT-KIIHQDVLKADVQKVIKDEFEENEELAVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + ++ ++ QKEV ERI A+ NS +YG LS+ + Sbjct: 127 ANLPYYVTTPILMKLLEEKLP---VRTIVVMIQKEVAERIAAKPNSKNYGSLSIAAQYYA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 A +F + VF P P V S ++ P +I + +F +RRKT+ + Sbjct: 184 DAETVFTVPKTVFVPQPNVDSAILRLSIREKPPITVKDEAFFFEIIRASFAQRRKTILNN 243 Query: 241 LKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L E +L I+ R E LS+E+F +++ L Sbjct: 244 LAHHFSTLSKQTIEEILQSINIDPRRRGEALSMEEFGVLSDNL 286 >gi|294496912|ref|YP_003560612.1| dimethyladenosine transferase [Bacillus megaterium QM B1551] gi|294346849|gb|ADE67178.1| dimethyladenosine transferase [Bacillus megaterium QM B1551] Length = 292 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + K IL Y KK +GQNFL+D NIL +I + + + IEIG G G LT+ L Sbjct: 8 PNRTKEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLA 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A+KV+ E DQ+ PIL D S + N ++I D LK D E+ F + ++ Sbjct: 68 KR-AKKVLAFEIDQRLLPILADTLSPYSNA-KVIHQDVLKADLKGTLEQEFENIEDLMVV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + + ++ QKEV +RI A+ + YG LS+ + T Sbjct: 126 ANLPYYVTTPILMKLLEEQIP---VRGIVVMLQKEVADRIAAKPGTKEYGSLSIAIQYYT 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 +A + + VF P P V S VI + P + ++ + +FG+RRKT+ + Sbjct: 183 EAETVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNN 242 Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L K+ E L A I+ R E LSI++F ++++ L Sbjct: 243 LVNNLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287 >gi|295702279|ref|YP_003595354.1| dimethyladenosine transferase [Bacillus megaterium DSM 319] gi|294799938|gb|ADF37004.1| dimethyladenosine transferase [Bacillus megaterium DSM 319] Length = 292 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + K IL Y KK +GQNFL+D NIL +I + + + IEIG G G LT+ L Sbjct: 8 PNRTKEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLA 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A+KV+ E DQ+ PIL D S + N ++I D LK D E+ F + ++ Sbjct: 68 KR-AKKVLAFEIDQRLLPILADTLSPYSNA-KVIHQDVLKADLKGMLEQEFENIEDLMVV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + + ++ QKEV ERI A+ + YG LS+ + T Sbjct: 126 ANLPYYVTTPILMKLLEEQIP---VRGIVVMLQKEVAERIAAKPGTKEYGSLSIAIQYYT 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240 +A + + VF P P V S VI + P + ++ + +FG+RRKT+ + Sbjct: 183 EAETVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNN 242 Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L K+ E L A I+ R E LSI++F ++++ L Sbjct: 243 LVNNLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287 >gi|297717804|gb|ADI50045.1| dimethyladenosine transferase [Candidatus Odyssella thessalonicensis L13] Length = 281 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 113/276 (40%), Positives = 167/276 (60%), Gaps = 6/276 (2%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + ++K + Y ++ KK +GQNFL ++ I++KIA S+G L +TV+EIG GPG LT+ Sbjct: 4 DHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRA 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL GA++V+ IE D + LK++ +L+IIQ DAL + + S PI+I+AN Sbjct: 64 LLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQADALTISPQDLL-PSRPIKIVAN 122 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+GT+LL W+ S+TL+FQKEV RI AQ + YGRL+VL + T+ Sbjct: 123 LPYNVGTQLLIRWLH---CLDNIVSMTLMFQKEVALRIVAQPKTADYGRLTVLAQYLTQP 179 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 T +FD+ P F P PKV S+++H +P L L+KIT AFG+RRK +R SL Sbjct: 180 TKVFDLPPGAFSPPPKVKSSIVHLVPKVLSEQDLALLPYLEKITHAAFGQRRKMIRSSLS 239 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + E+ + A + RAE L++E++ + IL D Sbjct: 240 AVLTEDQIQAANVAVTARAEELALENYIELARILKD 275 >gi|19745394|ref|NP_606530.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS8232] gi|209558786|ref|YP_002285258.1| dimethyladenosine transferase [Streptococcus pyogenes NZ131] gi|306828033|ref|ZP_07461298.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782] gi|27151569|sp|Q8P2N8|RSMA_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|19747502|gb|AAL97029.1| putative dimethyladenosine transferase [Streptococcus pyogenes MGAS8232] gi|209539987|gb|ACI60563.1| Dimethyladenosine transferase [Streptococcus pyogenes NZ131] gi|304429749|gb|EFM32793.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782] Length = 290 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 235 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|229828784|ref|ZP_04454853.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM 14600] gi|229793378|gb|EEP29492.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM 14600] Length = 290 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 150/293 (51%), Gaps = 18/293 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M S +L Y +K GQNFL+D +IL+ I +++ ++EIG G G Sbjct: 1 MAGLASPGSTIAVLEKYGFSFQKKYGQNFLIDRHILEGIVDAAQISREDFILEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 LTQ L G R+V+ +E D++ PIL D S + N +E+I D LK+D N S Sbjct: 61 LTQYLCEAG-REVLAVELDRKLIPILADTLSSY-NNVEVICHDVLKLDLSGLIAEKNASR 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI+++ANLPY I T ++ + + ES+T++ QKE+ +R+ S YG LS+ Sbjct: 119 PIKLVANLPYYITTPIIMSLFESHLP---LESITIMVQKELADRMQEGPGSKDYGALSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRK 235 + K +MF + P F P PKV S VI H + P+ E+ L ++ + +F +RRK Sbjct: 176 VQYYAKPEVMFQVPPSAFIPRPKVGSAVIRLTCHKSCPVEVSDEAYLFRVIRASFNQRRK 235 Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 TL LK ++ + G+ +R E L+++ F ++N L + + Sbjct: 236 TLTNGLKNAPDIRLPKEQITEVIEEMGLPATVRGEMLTLKQFAELSNRLRERE 288 >gi|113461695|ref|YP_719764.1| dimethyladenosine transferase [Haemophilus somnus 129PT] gi|170718610|ref|YP_001783811.1| dimethyladenosine transferase [Haemophilus somnus 2336] gi|123132270|sp|Q0I5C3|RSMA_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028810|sp|B0URM7|RSMA_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|112823738|gb|ABI25827.1| dimethyladenosine transferase [Haemophilus somnus 129PT] gi|168826739|gb|ACA32110.1| dimethyladenosine transferase [Haemophilus somnus 2336] Length = 281 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 13/272 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D NI++ I + ++EIG G G LT+ + ++ V Sbjct: 6 HLGHTARKRFGQNFLHDNNIIQNIVMAIYPQKEQFLVEIGPGLGALTEPVAE-KVERLTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIANLPYNI 129 IE D+ L+ H +L +I+ DA++ +FE+ + + +R+ NLPYNI Sbjct: 65 IELDRDLAERLRHHPFLHQ-KLNVIEYDAMQFNFEQLYIDENLAEKNQKLRVFGNLPYNI 123 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ + + + QKEV +R+ A NS YGRL+++ + + + + Sbjct: 124 STPLMFHLFKYHA---IIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVLPVLE 180 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ IPH P P L L ++T +AF +RRKTLR +L L Sbjct: 181 VPPTAFKPAPKVESAVVRLIPHKELPYPVKDLYWLNRVTTQAFNQRRKTLRNALSTLFSA 240 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L I+ RAENLSI D+ R+ N L DN Sbjct: 241 EKLTALAIDLEARAENLSIADYARLANYLADN 272 >gi|15674442|ref|NP_268616.1| dimethyladenosine transferase [Streptococcus pyogenes M1 GAS] gi|71910036|ref|YP_281586.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005] gi|27151597|sp|Q9A1I0|RSMA_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13621537|gb|AAK33337.1| putative dimethyladenosine transferase [Streptococcus pyogenes M1 GAS] gi|71852818|gb|AAZ50841.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005] Length = 290 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 235 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|312865682|ref|ZP_07725906.1| dimethyladenosine transferase [Streptococcus downei F0415] gi|311098803|gb|EFQ57023.1| dimethyladenosine transferase [Streptococcus downei F0415] Length = 284 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL + KK GQNFL D NIL+KI +++ + VIEIG G G LT+ L Sbjct: 2 TRAILERHGFTFKKSFGQNFLTDTNILQKIVDTTEIDQNVNVIEIGPGIGALTEFLAEQA 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A +V+ E D + PIL D N + +I +D LK D + F N + PI+++ANL Sbjct: 62 A-EVMTFEIDDRLIPILADTLRDFDN-VTVINEDILKSDLQTQIKNFANPNLPIKVVANL 119 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + I + + ++ QKEV RI+A+ N+ YG LS+ + A Sbjct: 120 PYYITTPILMHLIESKIP---FAEFVVMMQKEVANRISAEPNTKAYGSLSIAVQYYMSAK 176 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243 + F + VF P+P V S ++ P+ + + + +F RRKTL +L Sbjct: 177 VAFIVPRTVFVPAPNVDSAILKMTRRPAPLIAVQDEDFFFDVAKASFVHRRKTLWNNLTN 236 Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ L A ++ N+R E LSI+DF R+ + L D Sbjct: 237 RFGKEEATKSKLQAALEMAELKPNIRGEALSIQDFGRLADALLD 280 >gi|323128061|gb|ADX25358.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 290 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQIQIKQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 235 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|312898803|ref|ZP_07758191.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359] gi|310619965|gb|EFQ03537.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359] Length = 285 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 94/276 (34%), Positives = 138/276 (50%), Gaps = 13/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I+ + + K GQNFL+ +++K IA ++ +G V+EIG G G LTQ L Sbjct: 13 VRYIVKRFNLRMSKKWGQNFLIRPDVVKNIAIAADIGEGDEVLEIGPGIGTLTQALAETK 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +E D + PIL + N + II D LK+D K N S + ANLPY I Sbjct: 73 A-SVTAVEIDDRLLPILDKTLEDYEN-VRIIHGDILKIDINKEMNERS-FTVCANLPYYI 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + + ++ QKEV ER+TA+ S YG LSV + TK FD Sbjct: 130 TTPIIMRLLEERLP---IRKMVVMVQKEVAERMTAKPGSRIYGALSVAVQYYTKPRCEFD 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 ISP F P P VTSTV+ P + ++ + AF +RRKTL +LK G Sbjct: 187 ISPQSFLPPPAVTSTVVSMEVRTEPAVAVKDEKLFFRVVKFAFAQRRKTLLNALKGGGVP 246 Query: 248 N-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L +GI+ + R E LS+++F I + + Sbjct: 247 TEEASCMLETSGIDGSRRGETLSLQEFASIADSWYE 282 >gi|296329543|ref|ZP_06872029.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672740|ref|YP_003864411.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153286|gb|EFG94149.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410983|gb|ADM36101.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 292 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 20/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K IL Y KK +GQNFL+D NIL +I + + + VIEIG G G LT+ + Sbjct: 11 TKEILKKYCFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAKR- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125 A+KV+ E DQ+ PILKD S + N + +I D LK D E+ F I ++ANL Sbjct: 70 AKKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + T ++ + + + ++ QKEV ER+ A +S YG LS+ + T+A Sbjct: 129 PYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQS--- 240 + + VF P P V S VI I P ++ + +F +RRKTL + Sbjct: 186 TVMTVPKTVFVPQPNVDSAVIRLILRDGPAVDVENEAFFFQLIKASFAQRRKTLLNNLVN 245 Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ E +L + I+ R E+LSIE+F ++N L Sbjct: 246 NLPEGKAQKSTIEQVLEKTNIDGKRRGESLSIEEFAALSNGLY 288 >gi|86516099|gb|ABC97700.1| KsgA [Shigella flexneri] Length = 256 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ Sbjct: 1 RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175 Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ +R Sbjct: 176 SAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235 Query: 261 AENLSIEDFCRITNILTDN 279 AEN+S+ +C++ N L +N Sbjct: 236 AENISVAQYCQMANYLAEN 254 >gi|86516027|gb|ABC97664.1| KsgA [Shigella boydii] gi|86516033|gb|ABC97667.1| KsgA [Shigella boydii] gi|86516035|gb|ABC97668.1| KsgA [Shigella boydii] gi|86516037|gb|ABC97669.1| KsgA [Shigella boydii] gi|86516039|gb|ABC97670.1| KsgA [Shigella boydii] gi|86516043|gb|ABC97672.1| KsgA [Shigella boydii] gi|86516047|gb|ABC97674.1| KsgA [Shigella boydii] gi|86516051|gb|ABC97676.1| KsgA [Shigella boydii] gi|86516055|gb|ABC97678.1| KsgA [Shigella boydii] gi|86516057|gb|ABC97679.1| KsgA [Shigella dysenteriae] gi|86516059|gb|ABC97680.1| KsgA [Shigella dysenteriae] gi|86516061|gb|ABC97681.1| KsgA [Shigella dysenteriae] gi|86516063|gb|ABC97682.1| KsgA [Shigella dysenteriae] gi|86516065|gb|ABC97683.1| KsgA [Shigella dysenteriae] gi|86516067|gb|ABC97684.1| KsgA [Shigella dysenteriae] gi|86516069|gb|ABC97685.1| KsgA [Shigella dysenteriae] gi|86516073|gb|ABC97687.1| KsgA [Shigella dysenteriae] gi|86516075|gb|ABC97688.1| KsgA [Shigella dysenteriae] gi|86516077|gb|ABC97689.1| KsgA [Shigella dysenteriae] gi|86516079|gb|ABC97690.1| KsgA [Shigella dysenteriae] gi|86516081|gb|ABC97691.1| KsgA [Shigella flexneri] gi|86516083|gb|ABC97692.1| KsgA [Shigella flexneri] gi|86516085|gb|ABC97693.1| KsgA [Shigella flexneri] gi|86516087|gb|ABC97694.1| KsgA [Shigella flexneri] gi|86516093|gb|ABC97697.1| KsgA [Shigella flexneri] gi|86516097|gb|ABC97699.1| KsgA [Shigella flexneri] gi|86516101|gb|ABC97701.1| KsgA [Escherichia coli] gi|86516103|gb|ABC97702.1| KsgA [Escherichia coli] gi|86516105|gb|ABC97703.1| KsgA [Escherichia coli] Length = 256 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ Sbjct: 1 RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175 Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ +R Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235 Query: 261 AENLSIEDFCRITNILTDN 279 AEN+S+ +C++ N L +N Sbjct: 236 AENISVAQYCQMANYLAEN 254 >gi|152979807|ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] gi|226732589|sp|A6SV13|RSMA_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151279884|gb|ABR88294.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] Length = 255 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 93/260 (35%), Positives = 137/260 (52%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D +L I + T++EIG G +T++LL G +++ V+E Sbjct: 2 KHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLE-GVQQMHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136 D+ LK P RL I DAL+ DF S +R++ NLPYNI + LLF+ Sbjct: 61 LDRDLVERLKKSFD--PKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P + + QKEV ER+ A+ S YGRLSV+ WR +MF + P F Sbjct: 119 LAEMA---PHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ IP P+PC L+++ +AF +RRK +R L + E+ L + GI+ Sbjct: 176 PPPRVESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEVGID 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 LR E + + + + N L Sbjct: 236 PQLRPETIPLAQYVALANRL 255 >gi|199597856|ref|ZP_03211282.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus rhamnosus HN001] gi|258509566|ref|YP_003172317.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG] gi|199591292|gb|EDY99372.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus rhamnosus HN001] gi|257149493|emb|CAR88466.1| Dimethyladenosine transferase [Lactobacillus rhamnosus GG] gi|259650833|dbj|BAI42995.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG] Length = 294 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 92/279 (32%), Positives = 138/279 (49%), Gaps = 18/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ + VIEIG G G LTQ L A Sbjct: 13 AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQ-AH 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN ++ +D LK + + F+ + ++++ANLPY Sbjct: 72 QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A S+T++ QKEV R++A S YG LS+ Sbjct: 131 YITTPILLHLLRAHLP---LHSMTVMMQKEVAARLSAVPGSKDYGSLSIAVQLVADVATA 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ ES ++ + AF RRKTL +L L Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRSEPLATVQSPESFDRLVRGAFASRRKTLWNNLVALF 247 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G+ L A I RAE L+I DF R+ L Sbjct: 248 GKPNKDAIRTALSVAEIAPETRAEQLAIADFARLDEALR 286 >gi|331006688|ref|ZP_08329965.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989] gi|330419496|gb|EGG93885.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989] Length = 274 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 137/266 (51%), Gaps = 11/266 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + +K GQNFL D NI+ +I S + ++EIG G G +TQ L+ ++ VI Sbjct: 7 FAHKARKRFGQNFLTDQNIINRIVTSINAKPSDRLVEIGPGQGAITQQLIQACP-QLQVI 65 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ PIL +++P I Q DAL+ DF P+RI+ NLPYNI T L+F+ Sbjct: 66 ELDRDLIPILLAQFAKYPE-FAIHQQDALRFDFATLMVEKQPLRIVGNLPYNISTPLIFH 124 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + + QKEV R+ A +YGRLS++ + + +F + P F Sbjct: 125 LLSYQD---RIQDMHFMLQKEVVNRLVATAGEKNYGRLSIMVQYYCETEHLFAVPPECFD 181 Query: 197 PSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---- 250 P PKV S ++ PH + L + AF +RRKTLR +LK+L + L Sbjct: 182 PQPKVDSAIVRLQPHKKLPYVANNVAHLSHLVNLAFQQRRKTLRNTLKQLADGDALQIAA 241 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 + + +LR ENLS ED+ ++N L Sbjct: 242 EKLDLNLSLRPENLSTEDYVNLSNTL 267 >gi|94993613|ref|YP_601711.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10750] gi|118600904|sp|Q1J8J4|RSMA_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94547121|gb|ABF37167.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10750] Length = 298 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 9 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 68 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVEDEDFFFRVSRLSFVHRR 242 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 243 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|71902882|ref|YP_279685.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180] gi|94989731|ref|YP_597831.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10270] gi|251783338|ref|YP_002997643.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|118600903|sp|Q1JIN6|RSMA_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365851|sp|Q48VC6|RSMA_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71801977|gb|AAX71330.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180] gi|94543239|gb|ABF33287.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10270] gi|242391970|dbj|BAH82429.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 298 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 9 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 68 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 242 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 243 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|254787084|ref|YP_003074513.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Teredinibacter turnerae T7901] gi|237686969|gb|ACR14233.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Teredinibacter turnerae T7901] Length = 267 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 87/262 (33%), Positives = 135/262 (51%), Gaps = 7/262 (2%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + KK GQNFL D ++ I + +G ++EIG G G +T +LL + VI Sbjct: 7 LQHQAKKRFGQNFLQDQGVINAIVRAVHPQEGDNLVEIGPGQGAITGLLLEHCPN-LQVI 65 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ P L ++ +I Q DAL DF ++ P+RI+ NLPYNI T L+F+ Sbjct: 66 ELDKDLIPGLLAQFAKFRG-FKIHQTDALNFDFSSLSSVEHPLRIVGNLPYNISTPLIFH 124 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + + + QKEV ER+ A +YGRLS++ + + +F++ P F Sbjct: 125 LLS---FREQVRDMHFMLQKEVVERLAASPGEKNYGRLSIMAQYFCQVENLFEVPPECFI 181 Query: 197 PSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P+PKV S ++ +PH + + + + AF +RRKTLR SLK + Sbjct: 182 PAPKVDSAIVRLVPHKELPVKAHNMARFETLVKTAFAQRRKTLRNSLKSFEIDFASIDVK 241 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I+ RAENLS+E + ++N L Sbjct: 242 IDLAQRAENLSLEQYVNLSNAL 263 >gi|86516029|gb|ABC97665.1| KsgA [Shigella boydii] Length = 256 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ + +++VIE D+ Sbjct: 1 RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLMVIELDRDLA 59 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175 Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ +R Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235 Query: 261 AENLSIEDFCRITNILTDN 279 AEN+S+ +C++ N L +N Sbjct: 236 AENISVAQYCQMANYLAEN 254 >gi|164688862|ref|ZP_02212890.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM 16795] gi|164602066|gb|EDQ95531.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM 16795] Length = 288 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + K +++ + K +GQNFL+D N++ +I E + + +IE+G G G Sbjct: 1 MDRLSSHRATKEVVNKHNFKFSKSLGQNFLIDDNVIDRILEGARLSETDRIIEVGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ + + A V+ IE D+ PILK+ + N +E++ +D LKVD + N Sbjct: 61 LTREMGKV-AENVVAIEIDKTLIPILKETLADLDN-VEVVNEDILKVDVQGLINEKLNGG 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P++++ANLPY I T ++ ++ D + ++ QKEV +R+ A+ ++ YG LSV Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAKPSTKDYGALSVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235 + ++ H+F P P V S VI + + K + +FG+RRK Sbjct: 176 VQYYCDTEIVAKAPRHMFVPQPNVDSIVIGLHVRDEKKYVVDNEDIFFKTVKASFGQRRK 235 Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL SL LG L A I+ R E LSI++F ++N + Sbjct: 236 TLLNSLGGLGFLSKDEIREALQAANIDEKRRGETLSIDEFANLSNEI 282 >gi|222153745|ref|YP_002562922.1| dimethyladenosine transferase [Streptococcus uberis 0140J] gi|254807888|sp|B9DVT4|RSMA_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|222114558|emb|CAR43508.1| dimethyladenosine transferase [Streptococcus uberis 0140J] Length = 290 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 88/293 (30%), Positives = 148/293 (50%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + + +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-RAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N +++I D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VQVINQDILKSDLQSQIKQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P++++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPLKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++ + F RR Sbjct: 175 AVQYYMTAKVAFIVPKTVFVPAPNVDSAILKMVRRPEPLIEVTDEDFFFRVAKVGFIHRR 234 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G+ L A I+ ++R E L+I + ++ + L + Sbjct: 235 KTLWNNLTSHFGKTEEIKTKLTQALELADIKPSIRGEALTIPQYGKLADALKE 287 >gi|94987854|ref|YP_595955.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429] gi|94991737|ref|YP_599836.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS2096] gi|118600901|sp|Q1JDL6|RSMA_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600902|sp|Q1JNI8|RSMA_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94541362|gb|ABF31411.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429] gi|94545245|gb|ABF35292.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS2096] Length = 298 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 9 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 68 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 242 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 243 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|322412722|gb|EFY03630.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 290 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMAAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKNEDFFFRVSRLSFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 235 KTLWNNLTSHFGKSEDIKAKLEKGLALANIKPSIRGEALSIQDFGKLADALKE 287 >gi|314932715|ref|ZP_07840085.1| dimethyladenosine transferase [Staphylococcus caprae C87] gi|313654545|gb|EFS18297.1| dimethyladenosine transferase [Staphylococcus caprae C87] Length = 296 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 142/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ KI ++S D VIE+G G G+LT+ L Sbjct: 9 PSRTRALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 A+KV+ E DQ+ P+LKD + + N + II +D LK + K + I ++ Sbjct: 69 K-NAKKVMSFEIDQRLIPVLKDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A + YG LS++ + T Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYT 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + + E+ K+ + AF +RRKT+ + Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREEHLVQVDNEEAFFKLAKAAFAQRRKTINNN 243 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + + L A I+ R E L+I DF + Sbjct: 244 YQNFFKDGKKHKASILDWLESAEIDPKRRGETLTIHDFANLYE 286 >gi|139473080|ref|YP_001127795.1| dimethyladenosine transferase [Streptococcus pyogenes str. Manfredo] gi|62900490|sp|Q5XDX4|RSMA_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221708|sp|A2RCH2|RSMA_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|134271326|emb|CAM29544.1| dimethyladenosine transferase [Streptococcus pyogenes str. Manfredo] Length = 290 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 235 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287 >gi|254496674|ref|ZP_05109537.1| dimethyladenosine transferase [Legionella drancourtii LLAP12] gi|254354102|gb|EET12774.1| dimethyladenosine transferase [Legionella drancourtii LLAP12] Length = 256 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 10/263 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K GQNFL +++ I S ++EIG G G LT+ LL +++ IE Sbjct: 2 RHSPRKRFGQNFLQSRHVIDDILRSINPQLEDNLLEIGPGLGALTEPLLRRL-KRMTAIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L ++ +L +I DAL VD+ +F + +R+I NLPYNI T LL + Sbjct: 61 IDTDLQKYLSEL-PIAQGKLNLIAADALTVDYSQF---GAKLRVIGNLPYNISTPLLIHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + PF E + + QKEV ER+ AQ + YGRL+V+ + +F + P F P Sbjct: 117 L---RFAPFIEDMHFMLQKEVVERMAAQPGTKDYGRLTVMLQYHCDVDYLFAVPPEAFEP 173 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ +P+ +E L+++ AF RRKTL +LK + L GI Sbjct: 174 RPKVDSAVVRLVPYEKSPFESVAVEQLERLVASAFAMRRKTLNNNLKGIISAEQLLDLGI 233 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + R E +S+ ++ ++ +++ Sbjct: 234 DGGRRPEQISVAEYVQLAKFVSN 256 >gi|89094173|ref|ZP_01167116.1| dimethyladenosine transferase [Oceanospirillum sp. MED92] gi|89081648|gb|EAR60877.1| dimethyladenosine transferase [Oceanospirillum sp. MED92] Length = 268 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 6/265 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+++I S + T++EIG G G LT+ LL A ++ IE Sbjct: 8 HKARKRFGQNFLHDHGIIRRIIRSIAPHETDTMVEIGPGLGALTEELLAE-AGELDAIEL 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ PIL+ + ++ I + DA+K DF + +RI+ NLPYNI T+L+F+ + Sbjct: 67 DRDLPPILRTKFFSYGDKFRIHEADAMKFDFTQLRRSEKRLRIVGNLPYNISTQLIFHLL 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S E + + QKEV +R+ A +YGRL ++ + K +F + P F P+ Sbjct: 127 SHAD---DVEDMHFMLQKEVVDRMAAGPGENNYGRLGIMAQYFCKVESLFVVPPGAFNPA 183 Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S +I P+ E L+ + + AF RRKTLR +LK L + I+ Sbjct: 184 PKVDSAIIRLTPYRELPYVADEVEQLQTVVRTAFNMRRKTLRNNLKPLLSAEEIEALNID 243 Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281 LR E L I DF I+N L+ + Sbjct: 244 PGLRPEKLPISDFVAISNYLSKKKS 268 >gi|86516089|gb|ABC97695.1| KsgA [Shigella flexneri] gi|86516091|gb|ABC97696.1| KsgA [Shigella flexneri] Length = 256 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ Sbjct: 1 RFGQNFLNDHFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175 Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ +R Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235 Query: 261 AENLSIEDFCRITNILTDN 279 AEN+S+ +C++ N L +N Sbjct: 236 AENISVAQYCQMANYLAEN 254 >gi|254517379|ref|ZP_05129436.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3] gi|219674217|gb|EED30586.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3] Length = 270 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 7/261 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ ++ + + ++EIG G G LT L+ G ++ IE Sbjct: 10 HQARKRFGQNFLRDPGIIDRLERAIAPAESQHLVEIGPGLGALTDALVQSGC-QLDAIEL 68 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L S HPN + DAL+ DF +R++ NLPYNI T L+F + Sbjct: 69 DRDLVTPLLAAFSIHPN-FTLHSADALRFDFGSVVRGDEQLRVVGNLPYNISTPLIFRLL 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T + + + Q EV +R+T+Q S H+GRL ++ + + ++F++ P F P Sbjct: 128 EQAT---IIKDMHFMLQLEVVQRLTSQPGSKHWGRLGIMAQYLCRTELLFEVPPEAFDPP 184 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S +I PH +P C L+K+ + AF +RRKTLR +LK + + GI+ Sbjct: 185 PKVQSAIIRLTPHASPLFPDCNAAVLEKVVKAAFAQRRKTLRNNLKGMLSNEAIEGLGID 244 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE L + F + L Sbjct: 245 PGCRAETLELSQFVALAKALE 265 >gi|190572863|ref|YP_001970708.1| dimethyladenosine transferase [Stenotrophomonas maltophilia K279a] gi|190010785|emb|CAQ44394.1| putative dimethyladenosine transferase [Stenotrophomonas maltophilia K279a] Length = 267 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 133/258 (51%), Gaps = 10/258 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + + KI + DG ++EIG G G +T LL + K+ VIE D+ Sbjct: 16 AKKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDR 74 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L +++ L I+ D L+VDF + PIR++ NLPYNI + +LF+ + Sbjct: 75 DLIAPL-TAAAEPLGELTIVHRDVLRVDFTELA-AGQPIRLVGNLPYNISSPILFHALEH 132 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 133 AA---VIRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPK 189 Query: 201 VTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V S V+ +P +P + + ++ + AFG+RRKTLR +L + AG+ Sbjct: 190 VDSAVVRLVPR-DPATISISDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFVAAGVRP 248 Query: 258 NLRAENLSIEDFCRITNI 275 + RAE L + +F + N Sbjct: 249 DARAEQLDVAEFIALANA 266 >gi|15672672|ref|NP_266846.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis Il1403] gi|281491189|ref|YP_003353169.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis KF147] gi|27151600|sp|Q9CHN8|RSMA_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|12723599|gb|AAK04788.1|AE006302_6 kasugamycin dimethyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|281374930|gb|ADA64448.1| Dimethyladenosine transferase [Lactococcus lactis subsp. lactis KF147] gi|326406235|gb|ADZ63306.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis CV56] Length = 294 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 23/294 (7%) Query: 1 MTMNNK---SHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 MT NN S+ ++ IL + KK GQNFL D NIL KI +++ + VIEIG Sbjct: 1 MTENNIDRISNIIRTQDILRRHDFNFKKKFGQNFLTDHNILTKITQTAELSKEVNVIEIG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEK 111 G G+LTQ LL A +V+ E D+ PIL++ + + N ++ D LKVD +K Sbjct: 61 PGIGSLTQYLLEEAA-EVMAFEIDKSLIPILEETMAPYDN-FTLVSADILKVDLLSEIQK 118 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 F N + PI+++ANLPY I T +L + I + + ++ QKEV +RI A + Y Sbjct: 119 FKNPNLPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRIAASPKTKAY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229 G LS+ + +A++ F + VF P+P V S ++ + P+ E K + Sbjct: 176 GSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREAPLVEVEDEEWFFKTMHSS 235 Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276 F RRKTL +L+ G+ LL QA I +R E LSIE+F ++ + L Sbjct: 236 FVHRRKTLMNNLQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADAL 289 >gi|254520467|ref|ZP_05132523.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA] gi|226914216|gb|EEH99417.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA] Length = 281 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 12/272 (4%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++ Y K +GQNFL+D ++ + I + + VIEIG G G LT LL A+ Sbjct: 10 ELVKKYNFKFSKSLGQNFLIDDSVPRDIVAGAEVDENDLVIEIGPGVGTLTAQLL-NKAK 68 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV+ IE D PIL +P + +I DALKV+F + ++++ANLPY + T Sbjct: 69 KVVAIELDNDLIPILNQEIGDNP-KFTLIHKDALKVNFNEIIGEEKSVKLVANLPYYVTT 127 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + ++SLT++ QKEV ER+ A + YG LS+L + ++ + Sbjct: 128 PIIVKLLKE---GYNFKSLTIMIQKEVAERMNANPGNKDYGSLSLLVQYYCNTKIVRRVP 184 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG---- 245 P F P PKV S VI P + I + +F RRKTL +K +G Sbjct: 185 PQCFIPRPKVDSIVIRLDKLSEPKVKVENEKLFFDIIRNSFNMRRKTLWNGVKNIGLSKE 244 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E ++A I+ R E L+IE+F +++ + Sbjct: 245 NLELAFNEANIDPKRRGETLTIEEFATLSDKI 276 >gi|241662027|ref|YP_002980387.1| dimethyladenosine transferase [Ralstonia pickettii 12D] gi|240864054|gb|ACS61715.1| dimethyladenosine transferase [Ralstonia pickettii 12D] Length = 281 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 126/269 (46%), Gaps = 11/269 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + ++EIG G G LT L+ R + V Sbjct: 9 HQGHQARKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQV 67 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ +RL + DAL DF + P+RI+ NLPYNI + LLF Sbjct: 68 VELDRDLVARLQKRFG---DRLVVHAGDALAFDFGALQEVDRPLRIVGNLPYNISSPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + T+ + QKEV +R+ A S + RLSV+ R ++ D+ P F Sbjct: 125 HL---ATFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181 Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ IP P + +L + AF +RRK LR +L L Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTMAFSQRRKVLRNTLGALRDVVDFD 241 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + + RAE + +EDF + N L N+ Sbjct: 242 ALGFDLSRRAEEVPVEDFVAVANALPANR 270 >gi|92113048|ref|YP_572976.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM 3043] gi|119365016|sp|Q1QZ31|RSMA_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91796138|gb|ABE58277.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM 3043] Length = 282 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 136/282 (48%), Gaps = 20/282 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+N+ + +K GQNFL D ++ +I +IEIG G G LT Sbjct: 12 MSNRPPA---------HQARKRFGQNFLRDTGVIDRIVRVIAPRSDQRLIEIGPGQGALT 62 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP 118 + LL + VIE D+ P L+ +P+ I + DAL+ DF P Sbjct: 63 EPLLD-AVGALEVIELDRDLIPGLRVQFFNYPD-FVIHEGDALQFDFAALAAEGETPGKP 120 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +R+I NLPYNI T L+F+ ++A + + Q+EV ER+ A S +GRLSV+T Sbjct: 121 LRVIGNLPYNISTPLIFHLLTARGA---IADMHFMLQREVVERLAATPGSAAWGRLSVMT 177 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + + +F + F P PKV S ++ IPH P + I +EAFG+RRKT Sbjct: 178 QYHCRVDNLFVVPAEAFTPRPKVESAIVRLIPHDEPPHVAHDEALFGDIVREAFGQRRKT 237 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LR +LK + I+ R + LS+E+ RI N + + Sbjct: 238 LRNNLKTRLDDTAWAALDIDPGRRPQTLSVEELVRIANHVAE 279 >gi|194364446|ref|YP_002027056.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3] gi|194347250|gb|ACF50373.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3] Length = 267 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 134/258 (51%), Gaps = 10/258 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + + KI + DG ++EIG G G +T LL + K+ VIE D+ Sbjct: 16 AKKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDR 74 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L +++ L I+ D L+VDF + + PIR++ NLPYNI + +LF+ + Sbjct: 75 DLIAPL-TAAAEPLGELTIVHRDVLRVDFTELAD-GQPIRLVGNLPYNISSPILFHALEH 132 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S +GRLSV+ + T +F + P F P PK Sbjct: 133 AA---VIRDMHFMLQKEVVDRMAAGPGSKVFGRLSVMLQAYCEVTSLFVVPPGAFRPPPK 189 Query: 201 VTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V S V+ +P +P + + ++ + AFG+RRKTLR +L + AG+ Sbjct: 190 VDSAVVRLVPR-DPATINIRDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFAAAGVRP 248 Query: 258 NLRAENLSIEDFCRITNI 275 + RAE L + +F + N Sbjct: 249 DARAEQLDVAEFIALANA 266 >gi|299820686|ref|ZP_07052575.1| dimethyladenosine transferase [Listeria grayi DSM 20601] gi|299817707|gb|EFI84942.1| dimethyladenosine transferase [Listeria grayi DSM 20601] Length = 295 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 21/281 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NILK+IAE++G +EIG G G LT+ L A+ Sbjct: 13 EILKKYHFLFKKSLGQNFLIDSNILKRIAETAGLNAESNAMEIGPGIGALTEHLA-RNAK 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S +PN ++II D LK D E F + +P++++ANLP Sbjct: 72 EVVAFEIDQRLIPILDDTLSPYPN-VKIIHQDVLKADVRAALTENFSDPEAPLKVVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + +S+T + QKEV +RI+A + YG LS+ + +A + Sbjct: 131 YYVTTPIILKLLHEGIP---VDSMTFMLQKEVADRISAVPGTKSYGSLSIAIQYYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S +IH P+ ++T+ AF +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAIIHLKRREKPLAHVENETFFFEVTRAAFAQRRKTLWNNLVSK 247 Query: 245 GGENL---------LHQAGIETNLRAENLSIEDFCRITNIL 276 E L G++ R E +SI +F +++ L Sbjct: 248 FPELKENKEELETELTARGLDLKRRGETMSIPEFAVLSDFL 288 >gi|83588925|ref|YP_428934.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073] gi|119365033|sp|Q2RME8|RSMA_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83571839|gb|ABC18391.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073] Length = 288 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 145/281 (51%), Gaps = 20/281 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++ ++P+K GQNFL+D NI++KIA ++ G TV+EIG G G LTQ L A Sbjct: 12 ALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAAR-AG 70 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIRIIA 123 VI IE D++ F L++ + N + ++ DALKVDF++ +++A Sbjct: 71 LVIAIEIDRELFAALEETLAGRDN-VRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I T +L + +++ L L+ Q EVG R+ A+ YG LSV+ + T+ Sbjct: 130 NLPYYITTPILMHLLTSR---FRIAELVLMVQAEVGYRMLARPGGKDYGALSVVVQYYTE 186 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241 ++ + VF+P P+V S V+ P+ + ++ + AF +RRKT+ +L Sbjct: 187 PAVVLKVPRTVFYPRPEVDSLVLKLTCRTRPVVQVEDEDFFFRVVRAAFNQRRKTILNAL 246 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 LG E L AGI+ R E L +E+F I+ L Sbjct: 247 GSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASISRTLQ 287 >gi|209964862|ref|YP_002297777.1| dimethyladenosine transferase [Rhodospirillum centenum SW] gi|209958328|gb|ACI98964.1| dimethyladenosine transferase [Rhodospirillum centenum SW] Length = 276 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 101/280 (36%), Positives = 156/280 (55%), Gaps = 8/280 (2%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ +++ + + +K +GQ+FLLDLN+ ++I +G L G+ V+E+G GPG Sbjct: 1 MADLSHLPPLRDVIAEHGLGARKALGQHFLLDLNLTRRIVREAGDLSGVAVVEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ AR+V+ +E+D +F L D+ + RL +++ DAL VD + +P Sbjct: 61 LTRALVESAAREVVAVERDSRFAAALADVMAAADGRLRLVEADALTVDPVDL--VPAPRA 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +I+NLPYN+GT LL W+ + SLTL+FQKEV ERI A+ + YGRL+V+ W Sbjct: 119 VISNLPYNVGTPLLIGWLKRIA---EYRSLTLMFQKEVAERIVARPRTEAYGRLAVMCQW 175 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 ++FD+ F P P+V S + H P P +++ + AFG+RRK LR Sbjct: 176 LADCRILFDVPARAFTPPPRVDSAIAHLTPRARPADDPDFRTMEALVAAAFGQRRKMLRA 235 Query: 240 SLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SLK + E LL GI RAE + + F + L Sbjct: 236 SLKSVVREPEPLLESVGIAPTSRAEEVDVAGFVTLAKALR 275 >gi|116511486|ref|YP_808702.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris SK11] gi|116107140|gb|ABJ72280.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris SK11] Length = 294 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 155/294 (52%), Gaps = 23/294 (7%) Query: 1 MTMNNK---SHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 MT NN S+ ++ IL + KK GQNFL D NIL KI E++ + VIEIG Sbjct: 1 MTENNIDRISNIIRTQDILRRHDFNFKKKFGQNFLTDHNILTKITETADLSKEVNVIEIG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEK 111 G G+LTQ LL A +V+ E D+ PIL++ + + N ++ +D LKVD +K Sbjct: 61 PGIGSLTQYLLEEAA-EVMAFEIDKSLIPILEETMAPYDN-FTLVSEDILKVDLLSEIQK 118 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 F N + PI+++ANLPY I T +L + I + + ++ QKEV +RI A+ + Y Sbjct: 119 FKNPNLPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRIAARPKTKAY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229 G LS+ + +A++ F + VF P+P V S ++ + P+ E K + Sbjct: 176 GSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREEPLVEVEDEEWFFKTMHSS 235 Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276 F RRKTL +++ G+ LL QA I +R E LSIE+F ++ + L Sbjct: 236 FVHRRKTLMNNMQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADAL 289 >gi|299143369|ref|ZP_07036449.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517854|gb|EFI41593.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 288 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 16/283 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K L +L+ Y K +GQNFL+D NI++KI +S+ V+EIG G G Sbjct: 1 MERLYKPARLIELLNKYGFRFSKSLGQNFLIDGNIVRKIVDSAEISSNDNVLEIGPGVGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ L L A+KV+ IE D +LK+ ++II +D LK D +KF Sbjct: 61 LTEELC-LRAKKVVSIEIDNHLKELLKESLP--YENVKIIFNDVLKTDLKKFTEQEFGGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++ANLPY + T ++ I D ES+T++ QKEV R +A ++ YG LSV Sbjct: 118 TFKVVANLPYYVTTPIISKLIEEDLN---IESITVMIQKEVANRFSASPSTKDYGSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + F + +VF P P V S V++ + + L K+ + AF KRRKTL Sbjct: 175 IQFYSDVKYEFTVPKNVFMPKPNVDSAVVNLKIKKDLPDIDRDKLFKVVRAAFSKRRKTL 234 Query: 238 RQSLKRLG----GENLLHQA---GIETNLRAENLSIEDFCRIT 273 +L G +L I+ RAE LS E+F ++ Sbjct: 235 INALSSYGFNIDKNEILKALSISNIDEKRRAETLSSEEFIVLS 277 >gi|86516023|gb|ABC97662.1| KsgA [Shigella boydii] gi|86516025|gb|ABC97663.1| KsgA [Shigella boydii] gi|86516041|gb|ABC97671.1| KsgA [Shigella boydii] gi|86516045|gb|ABC97673.1| KsgA [Shigella boydii] gi|86516049|gb|ABC97675.1| KsgA [Shigella boydii] gi|86516053|gb|ABC97677.1| KsgA [Shigella boydii] gi|86516071|gb|ABC97686.1| KsgA [Shigella dysenteriae] Length = 256 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ Sbjct: 1 RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175 Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ +PH P P + L +IT EAF +RRKT+R SL L +L G++ +R Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGLDPAMR 235 Query: 261 AENLSIEDFCRITNILTDN 279 AEN+S+ +C++ N L +N Sbjct: 236 AENISVAQYCQMANYLAEN 254 >gi|50913600|ref|YP_059572.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10394] gi|50902674|gb|AAT86389.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10394] Length = 298 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 9 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 68 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRR 242 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I+ ++R E LSI+DF ++ + L + Sbjct: 243 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295 >gi|229551483|ref|ZP_04440208.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1] gi|258540770|ref|YP_003175269.1| dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705] gi|229315166|gb|EEN81139.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1] gi|257152446|emb|CAR91418.1| Dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705] Length = 294 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 138/279 (49%), Gaps = 18/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ + VIEIG G G LTQ L A Sbjct: 13 AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQ-AH 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN ++ +D LK + + F+ + ++++ANLPY Sbjct: 72 QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A S+T++ QKEV R++A S YG LS+ Sbjct: 131 YITTPILLHLLRAHLP---LHSMTVMMQKEVAARLSATPGSKDYGSLSIAVQLVADVATA 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ +S ++ + AF RRKTL +L L Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRPEPLAAVKNPDSFDRLVRGAFASRRKTLWNNLVALF 247 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G+ L A I RAE L+I DF R+ L Sbjct: 248 GKPNKAAIRTALSVAEIAPETRAEQLAITDFARLDEALR 286 >gi|229816980|ref|ZP_04447262.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM 20098] gi|229785725|gb|EEP21839.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM 20098] Length = 296 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 132/281 (46%), Gaps = 11/281 (3%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 16 AADIRRIADEAGVSPTKKFGQNFVIDPGTVRRIVREAHVEADTHVLEVGPGLGSLTLAIL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + ++ RL I+ DAL VD F P Sbjct: 76 ETGA-TMTAVEIDPPLAERLPNTVAEFMPDASKRLSIVNRDALTVDPATLPEFADGKPFT 134 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A + YG SV W Sbjct: 135 LVANLPYNVATPILLTLLERFDNLDSFLVMV---QKEVADRLAATPGNKIYGTPSVKLAW 191 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239 +A + I +VF+P+P V S ++HF P P L + AFG+RRKTL Sbjct: 192 YGEAKRVGTIGRNVFWPAPNVDSALVHFQRFGTPRPQELRERTFSLIDAAFGQRRKTLHA 251 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK++ AGI+ R E L+I++F + + N+ Sbjct: 252 ALKKIVPAEAFEAAGIDPTRRGETLTIDEFVALATAMEGNE 292 >gi|320120297|gb|EFE28598.2| dimethyladenosine transferase [Filifactor alocis ATCC 35896] Length = 286 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 85/279 (30%), Positives = 144/279 (51%), Gaps = 14/279 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +LK I Y K +GQNFL+D NIL+KI +S+ + VIE+G G G LT+ L Sbjct: 10 TLKEITKKYGFQFTKSLGQNFLVDTNILQKIVDSADIQEEDIVIEVGTGIGTLTRELAKR 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127 A+KV IE D++ PI+K+ +S + N ++ + D L+V E I++IAN+PY Sbjct: 70 -AKKVYAIEIDKKLIPIVKETTSNY-NNIDFVNMDFLEVVLEDLIQEKDRKIKVIANIPY 127 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + + ++ L+ QKEV +R++A+ ++ YG LSV + + + Sbjct: 128 YITTPIIMKCLESSL---DISTILLMIQKEVADRLSAEPSTKAYGSLSVAVQYYSDVEFV 184 Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------ 240 +S F+P PKV S ++ H + ++ + AF KRRKT+ S Sbjct: 185 GKVSKSCFYPQPKVDSGIVKLSKKHEYIFVRDRKLFSQVVKSAFAKRRKTISNSMIGFCE 244 Query: 241 -LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + L ++G + R E L++E+F ++N + + Sbjct: 245 QFTKDNVMKALEKSGTDAKRRGETLTVEEFAHLSNCMFE 283 >gi|21909726|ref|NP_663994.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS315] gi|28895107|ref|NP_801457.1| dimethyladenosine transferase [Streptococcus pyogenes SSI-1] gi|27151566|sp|Q8K8N6|RSMA_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21903910|gb|AAM78797.1| putative dimethyladenosine transferase [Streptococcus pyogenes MGAS315] gi|28810352|dbj|BAC63290.1| putative dimethyladenosine transferase [Streptococcus pyogenes SSI-1] Length = 290 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 153/293 (52%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 PI+++ANLPY I T +L + I + ++ ++ Q+EV +RI+A+ N+ YG LS+ Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + A + F + VF P+P V S ++ + P+ + ++++ +F RR Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMMRRDQPLIEVKDEDFFFRVSRLSFVHRR 234 Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L G E L A I++++R E LSI+DF ++ + L + Sbjct: 235 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKSSIRGEALSIQDFGKLADALKE 287 >gi|227824447|ref|ZP_03989279.1| dimethyladenosine transferase [Acidaminococcus sp. D21] gi|226904946|gb|EEH90864.1| dimethyladenosine transferase [Acidaminococcus sp. D21] Length = 287 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 93/276 (33%), Positives = 145/276 (52%), Gaps = 12/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL + + KK GQNFL++ ++++ IAE + G V+E+G G G LTQ L G Sbjct: 18 TRYILDTFGLHTKKRFGQNFLINESVVRGIAEKAKIGPGDLVLEVGPGIGTLTQALAETG 77 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +E D+ PIL+ + N +EII D LKVD + P + ANLPY I Sbjct: 78 AN-VKSVEIDESLLPILRKTLEGYDN-VEIIHGDILKVDLKDITG-GKPFTVAANLPYYI 134 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++F+ + A+ + + ++ QKEV ER+ A+ + YG LS+ + ++ + Sbjct: 135 TTPIIFSLLEANLP---LKRIVVMVQKEVAERMAARPGTKAYGPLSLALQYYSEPQLAIP 191 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG--- 245 + H F P+PKV S V+ +PI SL K+ + AF +RRK LR LK + Sbjct: 192 VPAHDFMPAPKVDSMVVVCEKRESPIVNVDASLYVKVVRAAFSQRRKMLRTCLKSMVRPG 251 Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 E + +AGIE R E+L+IE+F ++ + Sbjct: 252 DTAEAWMARAGIEPTRRGESLTIEEFGKLAESWEEK 287 >gi|254522856|ref|ZP_05134911.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14] gi|219720447|gb|EED38972.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14] Length = 267 Score = 277 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 132/258 (51%), Gaps = 10/258 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + + KI + DG ++EIG G G +T LL + K+ VIE D+ Sbjct: 16 AKKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDR 74 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L +++ L I+ D L+VDF + PIR++ NLPYNI + +LF+ + Sbjct: 75 DLIAPL-TAAAEPLGELTIVHRDVLRVDFTELA-AGQPIRLVGNLPYNISSPILFHALEH 132 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 133 AA---VVRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPK 189 Query: 201 VTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V S V+ +P +P + ++ + AFG+RRKTLR +L + AG+ Sbjct: 190 VDSAVVRLVPR-DPASIGINDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFIAAGVRP 248 Query: 258 NLRAENLSIEDFCRITNI 275 + RAE L + +F + N Sbjct: 249 DARAEQLDVAEFVALANA 266 >gi|284048769|ref|YP_003399108.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM 20731] gi|283952990|gb|ADB47793.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM 20731] Length = 284 Score = 277 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 12/278 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL + + KK GQNFL++ +++ IA + G V+EIG G G LTQ L G Sbjct: 12 TRYILDTFGLRAKKKFGQNFLINEQVVRGIAREAQVGPGDLVLEIGPGIGTLTQALAETG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +V +E D+ P+L + N +EI+ D LKVD P + ANLPY I Sbjct: 72 A-QVKSVEIDRTLLPVLAKTLEGYDN-VEIVPGDVLKVDLGAVTK-HRPFTVAANLPYYI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++F + D + L ++ QKEV ER+ A YG LS+ + ++ + Sbjct: 129 TTPIIFALLEEDLP---LQRLVVMVQKEVAERMIASPGGKDYGPLSLALQYYSRPRLAIP 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 + F P+P+V S V+ +P + + ++ + AF +RRK L LK LG Sbjct: 186 VPARDFMPAPRVDSMVVVCEKREHPAVDVPAKVFFRVVKAAFSQRRKMLSNCLKNLGLSG 245 Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + LL +AGI+ R E+L++E+F + + + Sbjct: 246 DQVQQLLAEAGIDGKRRGESLTMEEFGNLARAYRNQAE 283 >gi|169830264|ref|YP_001716246.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator MP104C] gi|169637108|gb|ACA58614.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator MP104C] Length = 299 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 147/278 (52%), Gaps = 15/278 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ +L+ Y + P+K +GQNFL+ +L KI E++ VIEIG G G LT+ L Sbjct: 14 EVRRLLAEYGLKPRKSLGQNFLVAAGVLDKILEAAEVEKDEVVIEIGPGVGALTRRLAEK 73 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLP 126 GAR V +E D + P+LK++ +R+ +I DALKVD+ + +++ANLP Sbjct: 74 GAR-VAAVEIDGRLIPLLKEVLGDLGDRVRLINADALKVDYGALLAEMGAGSFKVVANLP 132 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + + ++ A +E + L+ QKEV +R+TA + YG LSVL + T+A + Sbjct: 133 YYITSPFVAGFLEA---GYRFERMVLMVQKEVADRMTAANGTESYGALSVLVAYHTEADV 189 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244 ++ +S H F+P P V S V+ + P L E +I + +FG+RRK L +L Sbjct: 190 VWRVSRHCFYPPPAVDSAVVRLMRRPAPAVTVLQPELFFRIVRASFGRRRKMLPNALAGA 249 Query: 245 GG-------ENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ AGI+ +R E L+ + F I + Sbjct: 250 VPGLDRETWVQIIESAGIDPRVRGETLTPDQFGLIADA 287 >gi|296131650|ref|YP_003638897.1| dimethyladenosine transferase [Thermincola sp. JR] gi|296030228|gb|ADG80996.1| dimethyladenosine transferase [Thermincola potens JR] Length = 292 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 145/294 (49%), Gaps = 21/294 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +K I+ Y KK +GQNFL+D N++ I +++ V+EIG G G Sbjct: 1 MGSLASPVVVKNIIEKYGFRFKKALGQNFLIDRNVVTNICKTADLKKSDLVVEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115 LT+ L A VI +E D+ IL++ + N + IIQ+D LKV+ +K Sbjct: 61 LTEQLAHY-AGHVIAVELDKDLIGILEENLRAYGN-VTIIQNDILKVNLDKVVGDFRKEH 118 Query: 116 ---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 P +++ANLPY I T +L + + + ++ QKEV ERI AQ S YG Sbjct: 119 DLAEGPYKVVANLPYYITTPVLMYLMENNFN---ISEIVVMIQKEVAERIAAQPGSKDYG 175 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAF 230 LS+ + T+ ++ + VF P P+V S VI P E L +I + AF Sbjct: 176 ALSLAVRYYTEPALVMRVPRTVFIPKPEVDSAVIKLKRLSRPPVEVKDEELLFRIIRAAF 235 Query: 231 GKRRKTLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+RRKTL SL+ + + L Q GI R E L++++F ++NI ++ Sbjct: 236 GQRRKTLLNSLRGGLGCDKEVIKKALTQVGINPERRGETLTLQEFAALSNIFSN 289 >gi|254283714|ref|ZP_04958682.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B] gi|219679917|gb|EED36266.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B] Length = 265 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 7/264 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 P+K GQNFL D +++ IA++ G ++EIG G G LTQ L++ Sbjct: 7 GRLGHKPRKRFGQNFLRDQSVIDAIAQAINPQPGDHLVEIGPGEGALTQALISTECAYD- 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 IE D+ +L S + N + DAL DF + +R++ NLPYNI T L+ Sbjct: 66 AIELDRDLTAVLLASFSIYSN-FALHSADALNFDFSQLRVSEEKLRVVGNLPYNISTPLI 124 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + Q EV +R++A S H+GR+ V+ + + T + D+ P Sbjct: 125 FKLLEN---IDIIRDMHFMLQLEVVQRLSAAPGSKHWGRVGVMAQYLCQVTHLIDVPPES 181 Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P+PKV S V+ PH + C +L+ +T+ AF +RRKTLR + K + ++ L Sbjct: 182 FYPAPKVQSAVVSLRPHHSSPYKACDPVALRTVTRHAFAQRRKTLRNNFKGIIDDSALEA 241 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 GI+ N RAE+L++ DF + +++ Sbjct: 242 LGIDPNARAESLALADFVSLASLM 265 >gi|304438967|ref|ZP_07398890.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372633|gb|EFM26216.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 284 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 150/282 (53%), Gaps = 15/282 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K L IL + K +GQNFL+D NI+++IA+ +G +G V+EIG G G Sbjct: 1 MDRLFKPSVLVQILEEFGFRFTKSLGQNFLIDGNIVRRIADGAGVEEGSNVLEIGPGVGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPI 119 LT+ LL GA V+ +E D+ I K + +R++II DD L++D E+ + + PI Sbjct: 61 LTEELLLRGAN-VLAVEIDKNLVDIHKKTL--NYDRVKIIYDDFLRLDTEEIKSYLKGPI 117 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY + T ++ + +D ES+T++ QKEV R A+ + YG LSV Sbjct: 118 KVVANLPYYVTTPIITKILESDL---EVESITVMVQKEVANRFAAEAGTKDYGSLSVFIN 174 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + + +F + VF P P V S V+ + + L ++ + AF KRRKT+ Sbjct: 175 YYAEPKYLFSVPKSVFMPKPNVDSAVVKLEIKKHREDIDKDKLFRVVRGAFSKRRKTILN 234 Query: 240 SLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRIT 273 +L G +N+ L +GI+ N R E LS E+F ++ Sbjct: 235 ALSTYGFKNITKTEIAEALKISGIDANRRGETLSPEEFMVLS 276 >gi|71909268|ref|YP_286855.1| dimethyladenosine transferase [Dechloromonas aromatica RCB] gi|119365019|sp|Q479U6|RSMA_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71848889|gb|AAZ48385.1| dimethyladenosine transferase [Dechloromonas aromatica RCB] Length = 255 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 11/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQNFL+D I+ I + TV+EIG G G +T+ L+ + VIE Sbjct: 3 GHVARKRFGQNFLVDQGIIAAIISAVDPKRDETVVEIGPGLGAITEPLMAR-VDHLHVIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ LK P R+ + + DAL D F +I +R++ NLPYNI T LLF+ Sbjct: 62 IDRDLIARLKK--QHTPERMTVHEGDALAFD---FASIGKNLRLVGNLPYNISTPLLFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV ER+ A+ + +GR+SV+ +R + D+ P F P Sbjct: 117 ---AEYVDVVHDMHFMLQKEVVERMVAEPGNADFGRMSVMLQYRFYLEWLIDVPPESFDP 173 Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ IP E L ++ AF +RRK LR ++K L + + GI Sbjct: 174 PPKVQSAVVRLIPKPVSELNAKSQEKLSQVALTAFSQRRKMLRNTMKTLLSDAAFTELGI 233 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + R E++S+ED+ RI N L+ Sbjct: 234 DPTCRPEDVSVEDYVRIANYLS 255 >gi|23097505|ref|NP_690971.1| dimethyladenosine transferase [Oceanobacillus iheyensis HTE831] gi|27151561|sp|P59155|RSMA_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|22775728|dbj|BAC12006.1| dimethyladenosine transferase (16S rRNA dimethylase) [Oceanobacillus iheyensis HTE831] Length = 294 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 22/298 (7%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT N K IL Y KK +GQNFL+D+++L+ I +G IEIG G Sbjct: 1 MTTNKYIATPSRTKDILGKYHFTFKKSLGQNFLVDVSVLQNIIRHAGITKDTAAIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFF 113 G LT+ L + A +V+ E DQ+ PIL+D ++ N + +I D LK D ++ F Sbjct: 61 IGALTEQLA-IHADQVVAFEIDQRLLPILQDTLGEYSN-VSVIHQDILKADVTKVIDEHF 118 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + ++ANLPY I T +L I SLT++ QKEV +R++ + NS YG Sbjct: 119 KEGQEVHVVANLPYYITTPILMKLIRDRLP---VTSLTVMIQKEVADRMSGEPNSKSYGS 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFG 231 LS+ + ++A ++ ++ VF P P V S+++ P + +I Q +F Sbjct: 176 LSLAVQYYSEAKVVMNVPKQVFMPQPNVDSSILQLTMRKQPPVEVTDEDFFFEIIQASFA 235 Query: 232 KRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +RRKTL+ +L R +++L +AG+E R E+L++E+F ++ N Q Sbjct: 236 QRRKTLKNNLTRFFKGVHDKEKIDHILQEAGVEGIRRGESLTMEEFAQVANTFYQYQS 293 >gi|289551708|ref|YP_003472612.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01] gi|315660340|ref|ZP_07913193.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590] gi|289181239|gb|ADC88484.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01] gi|315494629|gb|EFU82971.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590] Length = 296 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 24/290 (8%) Query: 3 MNNK----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M NK K +L+ + KK +GQNFL+D+NI+ KI ++S + VIEIG G Sbjct: 1 MENKDIATPSRTKELLTRFGFNFKKSLGQNFLVDVNIIHKIIDASDIDERTGVIEIGPGM 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFN 114 G+LT+ L A++VI E DQ+ P+L + + N + +I +D LK D + N Sbjct: 61 GSLTEQLAK-KAKQVIAFEIDQRLIPVLDYTLAPYEN-VTVINEDILKADIAAAVHTYLN 118 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I ++ANLPY I T +L N + D + ++ QKEVGER+ A + YG L Sbjct: 119 DCEKIMVVANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNATVGTKAYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 S++T + T+ + + + VF P P V S V+ + P+ + K+ + AF + Sbjct: 176 SIVTQYYTETSKVVTVPKSVFMPPPNVDSIVVKLMQRSQPLVDIDDETAFFKLAKAAFAQ 235 Query: 233 RRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRIT 273 RRKT+ + + + + L+ A I+ R E LSI+DF R+ Sbjct: 236 RRKTINNNYQNHFKDGKKHKEAILSWLNAAEIDPKRRGETLSIQDFARLY 285 >gi|289423351|ref|ZP_06425159.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L] gi|289156282|gb|EFD04939.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L] Length = 293 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 147/291 (50%), Gaps = 17/291 (5%) Query: 1 MTMNNKSH-SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M SH + I+ + K +GQNFL+D NI+ KI + S + G VIE+G G G Sbjct: 1 MDKRLSSHKATMEIVKKHDFKFTKSLGQNFLIDDNIIDKIVDGSLAGQGDKVIEVGPGIG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---IS 116 LT+ L + + KV+V+E D++ PIL D S N + I+ +D +K D + + Sbjct: 61 TLTRELASR-SEKVMVVEIDKKLIPILGDTLSDFDN-VTIVNEDIMKADIKDLIDKNLDG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P++++ANLPY I T ++ ++ D + ++ QKEV ER+ A +G LSV Sbjct: 119 GPVKLVANLPYYITTPIIMRFLEEDIN---VTDIVVMVQKEVAERMNANPGKKDFGALSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRR 234 + ++ + H+F P P V S VI P + KI + +FG+RR Sbjct: 176 AVQFYCDTEIVAKVPRHLFVPQPNVDSIVIALRVRPERKYKVEDEDLFFKIVKASFGQRR 235 Query: 235 KTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 KTL SL +G + +L AGI+ R E LS+E+F R+++ + Sbjct: 236 KTLLNSLTSMGILDKTDISAVLSVAGIDEKRRGETLSLEEFARLSDCMHSR 286 >gi|52843122|ref|YP_096921.1| dimethyladenosine transferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|62900493|sp|Q5ZRF4|RSMA_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52630233|gb|AAU28974.1| dimethyladenosine transferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 256 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 10/263 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K GQNFL D I+ +I + L ++EIG G G LTQ LL ++ IE Sbjct: 2 RHSPRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLL-QKLNQLTAIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L +L +I DAL VDF +F +R++ NLPYNI T LL Sbjct: 61 IDTDLQSYL-TCLPASQGKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV ERI A + YGRLSV+ + + +FD+ P F P Sbjct: 117 LK---FITCIDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEP 173 Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ P+ +P E L+ I +AF RRKTL +LK + + L+ GI Sbjct: 174 RPKVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGI 233 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + R E +S+ ++ ++ +++ Sbjct: 234 DGGKRPEQISVAEYVQLAKFISN 256 >gi|191639502|ref|YP_001988668.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus casei BL23] gi|190713804|emb|CAQ67810.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus casei BL23] Length = 302 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 18/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A Sbjct: 19 AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 77 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN ++ +D LK D + F+ ++++ANLPY Sbjct: 78 QVVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 136 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A S+T++ QKEV ER++A S YG LS+ Sbjct: 137 YITTPILLHLLRAQLP---LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATA 193 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ S ++ + AF RRKTL +L L Sbjct: 194 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 253 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G+ + L A I+ RAE LSI DF R+ L Sbjct: 254 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 292 >gi|116492073|ref|YP_803808.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745] gi|122266463|sp|Q03HF6|RSMA_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116102223|gb|ABJ67366.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745] Length = 297 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 21/292 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N + + + IL Y + KK +GQNFL D N+L I +++ VIE+G G G+ Sbjct: 5 MDIGNPTRT-RAILEKYGLSAKKSLGQNFLTDPNVLLNIVDAAEVSPEDDVIEVGPGIGS 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ + A V+ E D+ +L + S + N + ++ D LK + E + Sbjct: 64 LTEQIAKR-AHHVLAFEIDRNLMNVLDETLSPYDN-ITVVNQDVLKANVNEEVENHLDGK 121 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++++ANLPY I T +L ++++ + + ++ QKEV ER+TAQ YG LSV Sbjct: 122 RRLKLVANLPYYITTPILKTFMASTLP---IDKMVVMMQKEVAERLTAQPGDKEYGSLSV 178 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRR 234 + +R + FD+S VF P PKV S ++ P +P + K F RR Sbjct: 179 VVQYRMNTQIEFDVSSKVFVPRPKVDSAIVSLTPRAGWEVMPEDDKDFFKTVHGCFMHRR 238 Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 K + +++ L G+ N+L GI+ +R E L++ DF ++ N + Sbjct: 239 KNIWNNMQGLYGKEPEIKAKIQNVLDDLGIDPQVRPERLTVLDFIKLHNRIQ 290 >gi|77165198|ref|YP_343723.1| 16S rRNA dimethylase [Nitrosococcus oceani ATCC 19707] gi|254434334|ref|ZP_05047842.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27] gi|119365041|sp|Q3JAF3|RSMA_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|76883512|gb|ABA58193.1| dimethyladenosine transferase [Nitrosococcus oceani ATCC 19707] gi|207090667|gb|EDZ67938.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27] Length = 264 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 7/264 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ +K GQ+FL D +++++ + ++EIG G G LT LL + Sbjct: 1 MNTLGHRARKRFGQHFLHDKGVIERLLRAINPQLNDLMVEIGPGQGALTLPLLH-CLGHL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 IE D+ L + + L + D+L DF + + +R++ NLPYNI T L Sbjct: 60 EAIELDRDLAAYLVERCAS-EGNLRLHNVDSLTFDFRTLAHENRRLRVVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + E + + Q+EV R+ A+ YGRLSV+ + + +F + Sbjct: 119 LFHLLGQ---IGILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S V+ IPH + + +L ++ +AF +RRKTL +LK L L Sbjct: 176 AFVPPPKVDSMVVRLIPHRPSLAPNISHGALNRVVSQAFSQRRKTLANALKGLLSSAELI 235 Query: 252 QAGIETNLRAENLSIEDFCRITNI 275 GI+ R E +S+ED+ +T Sbjct: 236 ALGIDPRQRPETISLEDYLALTRY 259 >gi|326405097|ref|YP_004285179.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium multivorum AIU301] gi|325051959|dbj|BAJ82297.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium multivorum AIU301] Length = 272 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 104/277 (37%), Positives = 160/277 (57%), Gaps = 6/277 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + L+ +++ + + K+ +GQ+FLLD ++L +IA +G L G+ VIE+G GPG LT Sbjct: 1 MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLAGVNVIEVGPGPGGLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A V IE D + + ++++ P RL +++ +D + + +P I+ Sbjct: 61 RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVVEG--DALDLDLAALVPAPRAIV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN GT +L W+ + S+TL+FQ+EV ERI A SP YGRL+VL Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + ++ + P F P PKV S V+ +PH + + P L + ++T AFG+RRK LR SL Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVGRVTAAAFGQRRKMLRGSL 235 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K LGG L AGI+ + RAE L+ +F + +L D Sbjct: 236 KALGGATLAEAAGIDPSRRAETLTPAEFLSLARLLPD 272 >gi|227532998|ref|ZP_03963047.1| dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189399|gb|EEI69466.1| dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 302 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 94/279 (33%), Positives = 139/279 (49%), Gaps = 18/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A Sbjct: 19 AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 77 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN + ++ +D LK D + F+ ++++ANLPY Sbjct: 78 QVVALEIDDRLLPILDETLADYPNAM-VVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 136 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A S+T++ QKEV ER++A S YG LS+ Sbjct: 137 YITTPILLHLLRAQLP---LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATA 193 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ S ++ + AF RRKTL +L L Sbjct: 194 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 253 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G+ + L A I+ RAE LSI DF R+ L Sbjct: 254 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 292 >gi|239630423|ref|ZP_04673454.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067575|ref|YP_003789598.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus casei str. Zhang] gi|239526706|gb|EEQ65707.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439982|gb|ADK19748.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus casei str. Zhang] gi|327383599|gb|AEA55075.1| Dimethyladenosine transferase [Lactobacillus casei LC2W] gi|327386791|gb|AEA58265.1| Dimethyladenosine transferase [Lactobacillus casei BD-II] Length = 298 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 18/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A Sbjct: 15 AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 73 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN ++ +D LK D + F+ ++++ANLPY Sbjct: 74 QVVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 132 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A S+T++ QKEV ER++A S YG LS+ Sbjct: 133 YITTPILLHLLRAQLP---LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATA 189 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ S ++ + AF RRKTL +L L Sbjct: 190 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 249 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G+ + L A I+ RAE LSI DF R+ L Sbjct: 250 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 288 >gi|313639861|gb|EFS04574.1| dimethyladenosine transferase [Listeria seeligeri FSL S4-171] Length = 284 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 141/277 (50%), Gaps = 21/277 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + T ++ + + +S+T + QKEV +RI+A ++ YG L++ + +A + Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 F + VF P P V S VIH P+ ++T+ +F +RRKTL +L Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNLASK 247 Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRI 272 E L+ GI+ R E L I +F ++ Sbjct: 248 FPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKL 284 >gi|125624667|ref|YP_001033150.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493475|emb|CAL98452.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071459|gb|ADJ60859.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 294 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 153/294 (52%), Gaps = 23/294 (7%) Query: 1 MTMNNK---SHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 MT NN S+ ++ IL + KK GQNFL D NIL KI E++ + VIEIG Sbjct: 1 MTENNIDRISNIIRTQDILRRHDFNFKKKFGQNFLTDHNILTKITETADLSKEVNVIEIG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEK 111 G G+L+Q LL A +V+ E D+ PIL++ + + N ++ D LKVD +K Sbjct: 61 PGIGSLSQYLLEEAA-EVMAFEIDKSLIPILEETMAPYDN-FTLVSADILKVDLLSEIQK 118 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 F N + PI+++ANLPY I T +L + I + + ++ QKEV +RI A + Y Sbjct: 119 FKNPNLPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRIAASPKTKAY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229 G LS+ + +A++ F + VF P+P V S ++ + P+ E K + Sbjct: 176 GSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREEPLVEVEDEEWFFKTMHSS 235 Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276 F RRKTL +++ G+ LL QA I +R E LSIE+F ++ + L Sbjct: 236 FVHRRKTLMNNMQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADAL 289 >gi|303229693|ref|ZP_07316481.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a] gi|302515818|gb|EFL57772.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a] Length = 284 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 13/283 (4%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 ++ + I + I K +GQNFL+ I+ +I +++ +G V+EIG G G L Sbjct: 4 SIIASPEVVHYICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTL 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 TQ L GA V IE D + +L +Q+ N + I+ D LK+D N + P ++ Sbjct: 64 TQGLAQSGAN-VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMN-NEPFKV 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + + + E L ++ QKEV R+ A+ + YG LSV + Sbjct: 121 VANLPYYITTPIIMSLLESRLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYY 177 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239 TK ++ D+ P F P+P VTS+VI + P + ++ + F +RRKT Sbjct: 178 TKPDIVLDVPPKSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFAN 237 Query: 240 SLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++K G E LL +A I+ R E ++++F + N Sbjct: 238 TMKTTGLSKDRIEELLAKANIDGQRRGETFTLQEFADVANAWA 280 >gi|282883264|ref|ZP_06291862.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B] gi|281296894|gb|EFA89392.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B] Length = 288 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 17/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K + IL Y K +GQNFL+D NI++KI +S+ + V+EIG G G Sbjct: 1 MERLFKPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ L L A+KV+ IE D++ +L++ + ++II D LK+D + + Sbjct: 61 LTEELA-LRAKKVVSIEIDKRLEDLLEETLP--YDNVKIIYKDFLKLDLKTLIDEEFKGQ 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++ANLPY I T ++ + E + ++ QKEV +R TAQ + YG LSV Sbjct: 118 NFKVVANLPYYITTPIIEKLLLNSEN---IEIINVMIQKEVAKRFTAQPQTKDYGSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + +A F + VF P P V S V + E KI + AF KRRKTL Sbjct: 175 IQFFCRAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKTL 234 Query: 238 RQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILT 277 SL + +L +GI+T RAE+L++EDF + N+L Sbjct: 235 VNSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDFLVLYVNVLK 282 >gi|332638745|ref|ZP_08417608.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Weissella cibaria KACC 11862] Length = 298 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 148/285 (51%), Gaps = 21/285 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + I++ + I KK +GQNFL D+NILK I + V+EIG G G LT+ L Sbjct: 13 TQAIMNQFGINTKKSLGQNFLTDINILKNIVAAGDVQKTDNVVEIGPGIGALTEQLA-RA 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIAN 124 A++V+ E D + P+L + + N + I+ +D LKVD EK F ++++P++++AN Sbjct: 72 AKQVVAFEIDDRLIPVLDHTMAPYDN-VTIVHNDILKVDLEKEFAKQFEDVTAPLKLVAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T +L + + ++++ ++ QKEV +R++A+ + YG L++ +R A Sbjct: 131 LPYYITTPILMQVLQSGIH---FDNIVVMMQKEVADRLSAEPGTKDYGSLTLAVQYRMNA 187 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK 242 + F +S F P+P V S +I P P + L ++ + F RRKTL +L Sbjct: 188 KLAFTVSRTAFVPNPNVDSAIISLTPREPLAIQPRDEKRLFELFKIGFVMRRKTLWNNLT 247 Query: 243 RLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ L ++ RAE LS+E F + N L D Sbjct: 248 TAFGKGEAMQAKLTAALAAIDLDPRTRAEKLSLERFVELHNALFD 292 >gi|300814328|ref|ZP_07094600.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511595|gb|EFK38823.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 288 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 144/288 (50%), Gaps = 17/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K + IL Y K +GQNFL+D NI++KI +S+ + V+EIG G G Sbjct: 1 MERLFKPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT+ L L A+KV+ IE D++ +L++ + ++II D LK+D + + Sbjct: 61 LTEELA-LRAKKVVSIEIDKRLKDLLEETLP--YDNVKIIYKDFLKLDLKTLIDEEFKGQ 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++ANLPY I T ++ + E + ++ QKEV +R TAQ + YG LSV Sbjct: 118 NFKVVANLPYYITTPIIEKLLLNSEN---IEIINVMIQKEVAKRFTAQPQTKDYGSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + KA F + VF P P V S V + E KI + AF KRRKTL Sbjct: 175 IQFFCKAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKTL 234 Query: 238 RQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILT 277 SL + +L +GI+T RAE+L++EDF + N+L Sbjct: 235 VNSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDFLVLYVNVLK 282 >gi|320530094|ref|ZP_08031164.1| dimethyladenosine transferase [Selenomonas artemidis F0399] gi|320137527|gb|EFW29439.1| dimethyladenosine transferase [Selenomonas artemidis F0399] Length = 291 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 146/278 (52%), Gaps = 14/278 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL+ + + K +GQNFL+D +++ I E++ TV+EIG G G LTQ L G Sbjct: 14 TRHILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY 127 AR V+ +E D++ +L + + N + ++ D LK++ + +++ANLPY Sbjct: 74 AR-VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + E L + QKEV R+TAQ S YG LS+ + T M+ Sbjct: 132 YITTPIIMTLLEQRLP---IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMV 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P+P+VTS V+ I +P P + ++ + AFG+RRKTL +L G Sbjct: 189 MDVPPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAG 248 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + L AGI + R E LS+EDF RI++ + D Sbjct: 249 LTKDAAQAALRAAGIAGSTRGEQLSLEDFARISDAVGD 286 >gi|331701953|ref|YP_004398912.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus buchneri NRRL B-30929] gi|329129296|gb|AEB73849.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus buchneri NRRL B-30929] Length = 296 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 20/292 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + IL+ Y + KK +GQNFL+DL +L I ++ VIEIG G G LT+ L Sbjct: 9 SPTRTQAILNRYHLSAKKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQL 68 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121 A KV+ E D P+L + + + N +EII D LK + K F+ P+++ Sbjct: 69 AK-AANKVVAFEIDANLLPVLDETLAPYDN-IEIINQDILKANLPKIIDDVFDTEKPLKV 126 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + I+ +T ++++ ++ QKEV ER+ A+ ++ YG LSV+ Sbjct: 127 VANLPYYITTPIVMDLITGETQ---FDAIVVMMQKEVAERLNAEPSTKPYGSLSVIVQEL 183 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239 + + F + F P PKV S ++ P + P ++ + F +RKTL Sbjct: 184 NQVEISFVVPKTAFIPQPKVDSAIVKLTPRVKRAVEPFDQKAFISFVRGCFMHQRKTLWN 243 Query: 240 SLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 +L+ + G + +L I+ +R ENL+++ F + N +++ Sbjct: 244 NLQGIFGKTPEVKGNIKEVLASVNIDAGVRPENLTVDQFVTLANAFHTLKNL 295 >gi|86516095|gb|ABC97698.1| KsgA [Shigella flexneri] Length = 256 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 89/259 (34%), Positives = 132/259 (50%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ Sbjct: 1 RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S Sbjct: 60 ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175 Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S V+ +PH P P + L +IT EAF +RRKT+R SL L +L GI+ +R Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235 Query: 261 AENLSIEDFCRITNILTDN 279 AEN+S+ C++ N L +N Sbjct: 236 AENISVAQDCQMANYLAEN 254 >gi|295694738|ref|YP_003587976.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912] gi|295410340|gb|ADG04832.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912] Length = 293 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 17/290 (5%) Query: 1 MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT + S S +L Y PKK +GQ+FL+D IL++I ++ V+EIG G G Sbjct: 1 MTDSRPSVPSAAELLRRYAFHPKKSLGQHFLVDDRILERIVAAADLSGREAVLEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---S 116 LT L A +V+ +EKD+ P+L ++ N +++ D L+VD + Sbjct: 61 ALTLRLA-QAAWRVLAVEKDRSLQPVLSEVLRDFGN-VQVCWGDVLEVDLPRMCEEAFGP 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +R++ANLPY + T ++ + P + + L+ Q+EV +R+TA+ + YG L+V Sbjct: 119 RTVRVVANLPYYVTTPVMMKLLEE---GPVMDRMVLMVQREVADRLTARPGTKTYGALTV 175 Query: 177 LTGWRTK-ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235 W + + + F+P P+V S V+ P P L ++ + FG+RRK Sbjct: 176 AVQWFAEKVESVARVPASCFWPRPEVDSVVVRLDLRPRPDPEVTRRLSRVVRAGFGQRRK 235 Query: 236 TLRQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL +L R E L A + + RAE LS+E+F R+ L D Sbjct: 236 TLLNALSHALAGRDRASIEQALRHARVAPDRRAETLSLEEFTRLAQALAD 285 >gi|54298928|ref|YP_125297.1| dimethyladenosine transferase [Legionella pneumophila str. Paris] gi|148361259|ref|YP_001252466.1| dimethyladenosine transferase [Legionella pneumophila str. Corby] gi|296108598|ref|YP_003620299.1| dimethyladenosine transferase [Legionella pneumophila 2300/99 Alcoy] gi|62900488|sp|Q5X0V1|RSMA_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221673|sp|A5IIC0|RSMA_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53752713|emb|CAH14148.1| hypothetical protein lpp2995 [Legionella pneumophila str. Paris] gi|148283032|gb|ABQ57120.1| dimethyladenosine transferase [Legionella pneumophila str. Corby] gi|295650500|gb|ADG26347.1| dimethyladenosine transferase [Legionella pneumophila 2300/99 Alcoy] Length = 256 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K GQNFL D I+ +I + L ++EIG G G LTQ LL ++ IE Sbjct: 2 RHSPRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLL-QKLNRLTAIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L + +L +I DAL VDF +F +R++ NLPYNI T LL Sbjct: 61 IDTDLQNYLTRL-PVSQGKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV ERI A + YGRLSV+ + + +FD+ P F P Sbjct: 117 LK---FITCIDDMHFMLQKEVVERIAATHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEP 173 Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ P+ +P E L+ I +AF RRKTL +LK + + L+ GI Sbjct: 174 KPKVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGI 233 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + R E +S+ ++ ++ +++ Sbjct: 234 DGGKRPEQISVAEYVQLAKFISN 256 >gi|303231892|ref|ZP_07318601.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6] gi|302513421|gb|EFL55454.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6] Length = 284 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 140/283 (49%), Gaps = 13/283 (4%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 ++ + I + I K +GQNFL+ I+ +I +++ +G V+EIG G G L Sbjct: 4 SIIASPEVVHYICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTL 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 TQ L GA V IE D + +L +Q+ N + I+ D LK+D + P ++ Sbjct: 64 TQGLAQSGAN-VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMH-HEPFKV 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + + + E L ++ QKEV R+ A+ + YG LSV + Sbjct: 121 VANLPYYITTPIIMSLLESRLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYY 177 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239 TK ++ D+ P F P+P VTS+VI + P + ++ + F +RRKT Sbjct: 178 TKPDIVLDVPPKSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFAN 237 Query: 240 SLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++K G E LL +A I+ R E ++++F + N Sbjct: 238 TMKTTGLSKDRIEELLAKANIDGQRRGETFTLQEFADVANAWA 280 >gi|54295765|ref|YP_128180.1| dimethyladenosine transferase [Legionella pneumophila str. Lens] gi|62900486|sp|Q5WSM3|RSMA_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53755597|emb|CAH17099.1| hypothetical protein lpl2855 [Legionella pneumophila str. Lens] gi|307611813|emb|CBX01526.1| hypothetical protein LPW_32131 [Legionella pneumophila 130b] Length = 256 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 10/263 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K GQNFL D I+ +I + L ++EIG G G LTQ LL ++ IE Sbjct: 2 RHSPRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLL-QKLNRLTAIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L +L +I DAL VDF +F +R++ NLPYNI T LL Sbjct: 61 IDTDLQSYL-TCLPVSQGKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + + QKEV ERI A + YGRLSV+ + + +FD+ P F P Sbjct: 117 LK---FITCIDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEP 173 Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ PH +P E L+ I +AF RRKTL +LK + + L+ GI Sbjct: 174 RPKVDSAIVRLTPHRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGI 233 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + R E +S+ ++ ++ +++ Sbjct: 234 DGGKRPEQISVAEYVQLAKFISN 256 >gi|260888713|ref|ZP_05899976.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] gi|330839885|ref|YP_004414465.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] gi|260861582|gb|EEX76082.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] gi|329747649|gb|AEC01006.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185] Length = 288 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 13/282 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + IL + + K +GQNFL+D +++K I ++ +G V+EIG G G LTQ L Sbjct: 8 SPAVTRHILKAFGLRASKRLGQNFLVDGSVVKDIVAAAEIEEGDRVLEIGPGIGTLTQGL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L GA V +E D++ +L + + + + L I+ D LK D + P ++ ANL Sbjct: 68 LEAGAH-VTAVELDKKLPAVLAETLAAY-DHLRIVPGDILKTDIRALME-NQPFKVAANL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + + + QKEV ER+ A S YG LSV + T+ Sbjct: 125 PYYITTPILLALLEQHLP---ITHIVTMVQKEVAERMIAAPGSKIYGALSVAVQYHTEPR 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKR 243 ++ +++P F P+P+V S+VI P ++ + +FG+RRKTL +L Sbjct: 182 IVREVAPRSFIPAPEVASSVIACKKRGKPPVEVTDERMFFRVARASFGQRRKTLANALLG 241 Query: 244 LGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G L A I+ R E LS+ +F R+ + + Q Sbjct: 242 TGASKDAVRRALDAAAIDEKRRGETLSLAEFARLADAFSAMQ 283 >gi|116496022|ref|YP_807756.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus casei ATCC 334] gi|116106172|gb|ABJ71314.1| dimethyladenosine transferase [Lactobacillus casei ATCC 334] Length = 298 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 93/279 (33%), Positives = 138/279 (49%), Gaps = 18/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + +K +GQNFL D IL+KI ++ VIEIG G G LTQ L A Sbjct: 15 AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 73 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127 +V+ +E D + PIL + + +PN ++ +D LK D + F+ ++++ANLPY Sbjct: 74 QVVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 132 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + A S+T++ Q+EV ER++A S YG LS+ Sbjct: 133 YITTPILLHLLRAQLP---LHSMTVMMQREVAERLSATPGSKEYGSLSIAVQLVASVATA 189 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S H F P+P V S ++ P+ S ++ + AF RRKTL +L L Sbjct: 190 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 249 Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G+ + L A I+ RAE LSI DF R+ L Sbjct: 250 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 288 >gi|238928059|ref|ZP_04659819.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531] gi|238884019|gb|EEQ47657.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531] Length = 292 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 144/276 (52%), Gaps = 14/276 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL+ + + K +GQNFL+D +++ I +++ TV+EIG G G LTQ L G Sbjct: 14 TRHILNAFHLRASKRLGQNFLVDAGVVRAIVDAADLSPADTVLEIGPGIGTLTQGLAESG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPY 127 AR V+ +E D++ +L + + N + I+ D LK+D + N+ +++ANLPY Sbjct: 74 AR-VVAVELDKKLPAVLAETLKGYDN-VAIVPGDILKLDILRILNLGAGEQFKVVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T +L + + + QKEV R+TA+ S YG LS+ + T A ++ Sbjct: 132 YITTPILMALLEQHLP---IARMVTMVQKEVAVRMTARPGSKDYGALSIAVQYYTDAHIV 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P+P+VTS VI P P + ++ + AFG+RRKTL +L G Sbjct: 189 MDVPPRAFMPAPEVTSAVIACRVRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAG 248 Query: 246 GENLL-----HQAGIETNLRAENLSIEDFCRITNIL 276 L AG+ ++R E LS+ DF R+++ + Sbjct: 249 LTKELCRAGLAAAGLAASIRGEQLSLADFARLSDAV 284 >gi|148261607|ref|YP_001235734.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5] gi|146403288|gb|ABQ31815.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5] Length = 272 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 105/277 (37%), Positives = 162/277 (58%), Gaps = 6/277 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + L+ +++ + + K+ +GQ+FLLD ++L +IA +G LDG+ VIE+G GPG LT Sbjct: 1 MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLDGVNVIEVGPGPGGLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL A V IE D + + ++++ P RL +++ +D + + +P I+ Sbjct: 61 RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVLEG--DALDLDLAALVPAPRAIV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN GT +L W+ + S+TL+FQ+EV ERI A SP YGRL+VL Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + ++ + P F P PKV S V+ +PH + + P L ++++T AFG+RRK LR SL Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVERVTAAAFGQRRKMLRGSL 235 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K LGG L AGI+ + RAE L+ +F + +L D Sbjct: 236 KALGGATLAEAAGIDPSRRAETLAPAEFLSLARLLPD 272 >gi|310657782|ref|YP_003935503.1| dimethyladenosine transferase [Clostridium sticklandii DSM 519] gi|308824560|emb|CBH20598.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Clostridium sticklandii] Length = 289 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 141/289 (48%), Gaps = 19/289 (6%) Query: 3 MNN-KSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MNN SH + K I+S Y K +GQNFL+D ++L +I +S+ TVIEIG G G Sbjct: 1 MNNLASHKITKDIVSKYGFRFTKSLGQNFLVDEHVLSQIVDSAEIDSEDTVIEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118 LT+ L A++VI IE D+ PIL + + N ++II D LK D + N SP Sbjct: 61 LTRELSYR-AKQVISIEIDKNLIPILSETLADRDN-IKIINQDILKTDLHELVNEFSPDR 118 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++ANLPY I T ++ ++ +++ ++ QKEV RI A ++ YG LSV Sbjct: 119 KVKVVANLPYYITTPIIMRFLEEKVP---LKTMVIMIQKEVANRINAVPSTKDYGSLSVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235 + ++ F P P V S VI + + ++ + AF KRRK Sbjct: 176 VQYYCDTDIVAKAPKGAFIPEPGVDSAVIKLEVKEDKGIELIDEDLFFEVVKAAFSKRRK 235 Query: 236 TLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL +L G + L A I+ LR E L ++ F + N Sbjct: 236 TLLNALSTFGNIGGKQEAKMALEIANIDAQLRGETLDMKQFASLANAYA 284 >gi|326789765|ref|YP_004307586.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427] gi|326540529|gb|ADZ82388.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427] Length = 288 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 154/293 (52%), Gaps = 18/293 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + I+S Y +K GQNFL+D +L KI +++ VIEIG G G Sbjct: 1 MRKIATVEGTRAIISKYPFAFQKKFGQNFLIDPQVLDKIIDAAEITKEDCVIEIGPGIGC 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118 +TQ LL A KVI IE D Q PIL++ P+ ++I +D LKVD SP Sbjct: 61 VTQALLE-KAGKVISIEIDNQLIPILEEQFGAEPH-FKLIHNDVLKVDLAALIAEESPNR 118 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 I+++ANLPY I T ++ + + ES+T++ QKEV +R++++ + YG ++V Sbjct: 119 RIKVVANLPYYITTPIIMALLEDELP---IESITVMVQKEVADRLSSKPGTKQYGAIAVS 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRK 235 + + ++ D+ + F PSP V S VI H P+ ++ + +I + AF RRK Sbjct: 176 VNYFSTPELVVDVPRNCFMPSPNVDSAVIKLNVHEEPLVKTNNVKQMFRIIKAAFLLRRK 235 Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 TL +L G + LL ++GI R E LSIE+F R+++ + +++ Sbjct: 236 TLLNTLAAHGDLGIDKERLKELLDESGIGAQTRGETLSIEEFARLSDYIDEHR 288 >gi|313893343|ref|ZP_07826917.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442112|gb|EFR60530.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str. F0412] Length = 284 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 13/273 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGAD- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + I+ D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245 F P+P VTS+VI + P + ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLSKDR 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWAS 281 >gi|160871590|ref|ZP_02061722.1| dimethyladenosine transferase [Rickettsiella grylli] gi|159120389|gb|EDP45727.1| dimethyladenosine transferase [Rickettsiella grylli] Length = 269 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 7/260 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ+FL + I+ KI + ++IEIG G G LT+ L+ L +I IE Sbjct: 5 FKTRKRFGQHFLHERTIIDKIIHAIAPKKTDSMIEIGPGLGALTEQLVPL-VHYLIAIEL 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P+L++ I+Q D L VDF I R++ NLPYNI T LLF+ I Sbjct: 64 DKNLIPLLEEKCVGL-GEFMILQGDVLNVDFRTLTKIKCRWRVVGNLPYNISTPLLFHCI 122 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + + QKEV +RI AQ YGRLSV+ + + +F++ P F P Sbjct: 123 NHVSN---IQDMHFMLQKEVADRINAQPGQSSYGRLSVMIQYYCQVEKLFNVKPGAFRPP 179 Query: 199 PKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI IP+ S +I + AF RRK LR +L E+ Q GI Sbjct: 180 PKVDSAVIRLIPYRKLPHKAKSSLLFAEIVKNAFNHRRKMLRNNLSYCLQEHDFEQLGIR 239 Query: 257 TNLRAENLSIEDFCRITNIL 276 +++R E L++ D+ ++ N + Sbjct: 240 SSVRPEQLAVNDYVKLANFV 259 >gi|329767929|ref|ZP_08259441.1| dimethyladenosine transferase [Gemella haemolysans M341] gi|328838592|gb|EGF88195.1| dimethyladenosine transferase [Gemella haemolysans M341] Length = 286 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + IL + KK +GQNFL+D NIL +I + +G + I VIEIG G G+LT Sbjct: 1 MIGTPKNTFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNENIGVIEIGPGIGSLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118 + L A+KVI E D + PIL + + + N +EII +D LKVD +K Sbjct: 61 EALAK-KAKKVISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIAEKMSDCEK 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I ++ANLPY I T +L + I + ++ QKEV R+ A+ + Y L++L Sbjct: 119 IMVVANLPYYITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILL 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + T +F + VF P+P V S V+ + K + F +RRKTL Sbjct: 176 NYYTDVEYLFTVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLL 235 Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269 +L G++ IE R+E LS+ +F Sbjct: 236 NNLISSYGKDKKQDLQNACVDSDIEPGRRSETLSLAEF 273 >gi|326772378|ref|ZP_08231663.1| dimethyladenosine transferase [Actinomyces viscosus C505] gi|326638511|gb|EGE39412.1| dimethyladenosine transferase [Actinomyces viscosus C505] Length = 367 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 136/283 (48%), Gaps = 16/283 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF+ D +++I ++G TV+EIG G G+LT LL Sbjct: 70 PTEVRGLCQALGIRPTKTLGQNFVHDAGTVRRIVRTAGVRPQDTVLEIGPGLGSLTLALL 129 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIR 120 GAR VI +E D L D RL +IQ DAL + P R Sbjct: 130 ETGAR-VIAVEIDPALARALPVTVADRMPHAAGRLTLIQADALSITGPDSLGEAEPPPTR 188 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ +L + A P ES+T++ Q EV +R+ A+ S YG SV W Sbjct: 189 LVANLPYNVAVPVLLTALEA---LPSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAW 245 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 +A IS HVF+P P V S ++ + P E + + AF +RRKTLR+ Sbjct: 246 YAEARRTLTISRHVFWPVPNVDSALVELMRRRPPTTRATREQVFAVVDAAFAQRRKTLRK 305 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +L +L G E+ L A I+ R E L I F + +L Sbjct: 306 ALAKLAGGADAAESALRAADIDPTRRGETLDITAFAALAEVLQ 348 >gi|269797689|ref|YP_003311589.1| dimethyladenosine transferase [Veillonella parvula DSM 2008] gi|269094318|gb|ACZ24309.1| dimethyladenosine transferase [Veillonella parvula DSM 2008] Length = 284 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 85/272 (31%), Positives = 135/272 (49%), Gaps = 13/272 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ KI ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDKIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGAD- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + II D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASY-NNVRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245 F P+P VTS+VI + P + ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWA 280 >gi|291455675|ref|ZP_06595065.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213] gi|291382603|gb|EFE90121.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213] Length = 309 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 19/287 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 14 AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREADVTTNDHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKV--DFEKFFNISSPIR 120 GA + +E D L ++ +RL ++ DAL V D FN + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPRTVAEFMPEAADRLTVVNRDALTVTPDNVPDFNGDTSFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 133 LVANLPYNVATPILLTLLERFDSLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---------CCLESLKKITQEAFG 231 A + I +VF+P+P V S ++ F + E + ++ AFG Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYAADDTQAPSHGKSSADRELVFRLIDAAFG 249 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +RRKTL +LK + AGI+ R E L++ +F + + Sbjct: 250 QRRKTLHAALKTIVPAEAFAAAGIDPTRRGETLTVTEFAALAAAVQS 296 >gi|291612514|ref|YP_003522671.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1] gi|291582626|gb|ADE10284.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1] Length = 264 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 96/264 (36%), Positives = 138/264 (52%), Gaps = 11/264 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL+D NI+ I + ++EIG G G LT+ LL + V+E Sbjct: 9 GHEAKKRFGQNFLVDQNIIADIVRAIRPEADDNMVEIGPGLGALTRPLLKHL-NILHVVE 67 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ LK Q +++ I + DALK D F +++P+RI+ NLPYNI + LLF++ Sbjct: 68 IDRDIIARLKTDYPQ--DKIVIHEGDALKFD---FATLAAPLRIVGNLPYNISSPLLFHF 122 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q EV ER+ A ++P YGRLSV+ +R + D+ P F P Sbjct: 123 ---ADYAARITDMHFMLQNEVVERMVAAPSTPEYGRLSVMLQYRFHMEKLIDVPPQSFRP 179 Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S ++ IP K+ AFG+RRKTLR +LK E L Q GI Sbjct: 180 APKVDSAIVRMIPIPAGEICVKDEALFAKVVSAAFGQRRKTLRNTLKNYLPEADLLQLGI 239 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 + LRAENL + +F I N L+ + Sbjct: 240 DPQLRAENLGVPEFALIANHLSGH 263 >gi|116333120|ref|YP_794647.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367] gi|122270191|sp|Q03T56|RSMA_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116098467|gb|ABJ63616.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367] Length = 296 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 149/297 (50%), Gaps = 26/297 (8%) Query: 3 MNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56 M N+ + K IL+ Y+++ KK +GQNFL DLNIL+ I + D VIEIG Sbjct: 1 MTNELPEIGSPARTKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGP 60 Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---- 112 G G LT+ + A KV+ E D+ P+L + + N ++II +D LK + Sbjct: 61 GIGALTEQIAKR-AHKVVAFEIDENLLPVLDETLMDYKN-VKIINEDILKANLPAVVADE 118 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F P++++ANLPY I T +L + + +E++ ++ Q EV ER+ A+ + YG Sbjct: 119 FEADRPLKLVANLPYYITTPILMGVLQSTV---RFEAIVVMMQAEVAERLVAEPGTKAYG 175 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230 LSV+ +R + F++ F P P V S +I P P ++L + F Sbjct: 176 SLSVIMQYRAHVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYEDKALFSFVKGCF 235 Query: 231 GKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 RRK+L +L+ + G+ +L+Q GI LR E L++ +F +TN + Sbjct: 236 AHRRKSLWNNLQGIFGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTNAFHN 292 >gi|253995957|ref|YP_003048021.1| dimethyladenosine transferase [Methylotenera mobilis JLW8] gi|253982636|gb|ACT47494.1| dimethyladenosine transferase [Methylotenera mobilis JLW8] Length = 257 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 11/264 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I KK GQNFL D ++ + ++ ++EIG G G LTQ L+ + V+E Sbjct: 2 KHIAKKRFGQNFLTDQGVISSLVDAISPKANDLMVEIGPGLGALTQPLMQQL-DMLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ ++ N++ I DALK DF N IR++ NLPYNI T +LF+ Sbjct: 61 VDRDIISWMEKTYVH--NKITIHNSDALKFDFSSLGNA---IRVVGNLPYNISTPILFHL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ + + QKEV ER+ A ++ YGRLSV+ +R + +F + P F P Sbjct: 116 LNNVA---SIIDMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMEYLFTVPPEAFDP 172 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S + +PH + P P E+L ++ AFG+RRKTLR +LK L + + Sbjct: 173 APKVESAFVRCVPHASLPHPADDEALFAQVVTAAFGQRRKTLRNTLKGLLDDEGFKALAL 232 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 ++ LRAENLS+ DF I+N L+ N Sbjct: 233 DSTLRAENLSVADFAGISNYLSQN 256 >gi|306820341|ref|ZP_07453980.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551670|gb|EFM39622.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 287 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 18/286 (6%) Query: 1 MTMNNKSHSLK-TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M N S + I+ Y K +GQNFL++ NIL KI ES+ V+EIG G G Sbjct: 1 MNFNLSSSKITGEIIKKYGFKMTKSLGQNFLINENILDKIIESADISSDDVVLEIGTGIG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---IS 116 LTQ L A+KVI +E D+ PIL + S + N + II D LK D + I+ Sbjct: 61 TLTQRLCE-NAKKVIAVEIDRNLIPILNETLSNYDN-ITIINKDILKTDINEELKNLSIN 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I+++ANLPY I T ++ + + + L+ QKEV +R+ A ++ YG LS+ Sbjct: 119 QKIKVVANLPYYITTPIIMKVLEDKVN---VDCMVLMLQKEVADRMNASPSTKDYGSLSI 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRR 234 + ++ + F P P V S V+ + N + KI + +F KRR Sbjct: 176 AVQYYCDTAIVCKVPKSSFIPEPNVDSLVLKLVVNEKRNVDISNEDLFFKIVRGSFSKRR 235 Query: 235 KTLRQSLKR---LGGEN----LLHQAGIETNLRAENLSIEDFCRIT 273 KT+ SL LG ++ LL +GI++ R E LSI +F + Sbjct: 236 KTILNSLSNYEDLGDKDKIQKLLEISGIDSKRRGETLSIYEFANLA 281 >gi|238019586|ref|ZP_04600012.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748] gi|237863784|gb|EEP65074.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748] Length = 284 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGAD- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + I+ D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245 F P+P VTS+VI + P + ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWA 280 >gi|323701639|ref|ZP_08113311.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM 574] gi|323533412|gb|EGB23279.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM 574] Length = 296 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 142/291 (48%), Gaps = 22/291 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +++ I+ + +K +GQNFL+D NI+ KI ++ + EIG G G Sbjct: 1 MRELTSPTTVREIIKAHGFKVRKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115 LT+ L A +V+ +E DQ PIL + + P + E+IQ DA KVDF++ Sbjct: 61 LTRRLAQE-AGRVLAVEIDQNLLPILNETLADLP-KAEVIQADARKVDFDQLAAERTQGQ 118 Query: 116 ----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 +++ANLPY I T LL T E L ++ QKEV +R+ A Y Sbjct: 119 FGPGGKAYKLVANLPYYITTPLLL---HLLTSGFNLELLVVMIQKEVADRLQASPGGKDY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229 G LSV+ + T ++ + VF+P P V S VI P E+ K+ + A Sbjct: 176 GSLSVVVQYYTVPEIVCKVPKTVFYPVPDVDSAVIRLTRRPVPPVQLRNEETFFKVVRAA 235 Query: 230 FGKRRKTLRQSLKRLGGE------NLLHQAGIETNLRAENLSIEDFCRITN 274 FG+RRKTL +L G ++L++ G++ R E LS+E+F + N Sbjct: 236 FGQRRKTLINALTGSGLASKETWLSVLNETGLDPARRGETLSLEEFAALAN 286 >gi|188992955|ref|YP_001904965.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. B100] gi|226732640|sp|B0RUI3|RSMA_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|167734715|emb|CAP52925.1| Dimethyladenosine transferase [Xanthomonas campestris pv. campestris] Length = 262 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 130/257 (50%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L D ++ +L+II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 ASA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + + FG+RRKTLR +L + AG+ + Sbjct: 183 VDSAVVRLVPRDAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAGVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|315924856|ref|ZP_07921073.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621755|gb|EFV01719.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 295 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 140/289 (48%), Gaps = 17/289 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + + ++ ++ +++ K GQNFL+D +IL KIA + TVIEIG G G Sbjct: 1 MKLTSPT-MVEALMQRHELHFNKRFGQNFLIDDHILDKIARAGDLTPTDTVIEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118 LT+ L A +VI +E D + P L + + N + ++ D LK D ++P Sbjct: 60 LTRELSAR-AGQVIAVEIDHKLIPALGETLADCGN-VHVVNADVLKTDLAALVAEAAPGT 117 Query: 119 --IRIIANLPYNIGTRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRL 174 ++++ANLPY I T ++ + WP + L Q+EVGERI A YG L Sbjct: 118 ARLKVVANLPYYITTPIMMQLLETR-WPDGVALAQMVFLVQREVGERICAAPGGKIYGSL 176 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKR 233 S+ + + + F + VF P PKV S VI P P + ++ + AF R Sbjct: 177 SIACQYYARPEIAFAVPATVFMPRPKVDSVVIAMKKATPPYAPSDPDQFFRVVKAAFMNR 236 Query: 234 RKTLRQSL--KRLGGENLL----HQAGIETNLRAENLSIEDFCRITNIL 276 RKTL SL ++ L +AGI+ +RAE L FC + N L Sbjct: 237 RKTLINSLTTNTAYTKDQLLAAMAEAGIDPKVRAEKLDGTGFCALANAL 285 >gi|313896764|ref|ZP_07830312.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974681|gb|EFR40148.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 291 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 146/278 (52%), Gaps = 14/278 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL+ + + K +GQNFL+D +++ I E++ TV+EIG G G LTQ L G Sbjct: 14 TRHILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETG 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY 127 AR V+ +E D++ +L + + N + ++ D LK++ + +++ANLPY Sbjct: 74 AR-VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPY 131 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + E L + QKEV R+TAQ S YG LS+ + T M+ Sbjct: 132 YITTPIIMTLLEQRLP---IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMV 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 D+ P F P+P+VTS V+ I +P P + ++ + AFG+RRKTL +L G Sbjct: 189 MDVPPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAG 248 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + L AGI + R E LS++DF RI++ + D Sbjct: 249 LTKDAAQAALRAAGIAGSTRGEQLSLQDFARISDAVGD 286 >gi|227487807|ref|ZP_03918123.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092309|gb|EEI27621.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 286 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 20/286 (6%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MN+ ++ + + I+P K +GQNFL D N ++ I ++G VIE+G G Sbjct: 1 MNDSPRLLGPAEIRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF 113 G+LT L+ V +E D++ L + H RL ++ DAL V E F Sbjct: 61 LGSLTLGLVGE-VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNADALAVTREA-F 118 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + P I+ANLPYN+ +L + + P + ++ Q+EV +R++A + YG Sbjct: 119 GEAEPTAIVANLPYNVAVPVLLHLLRT---VPSIRRVLVMVQEEVADRLSASPGTKIYGV 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGK 232 SV + + + HVF+P+P V+S ++ NP E+L + AF + Sbjct: 176 PSVKASYFGEVKKAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEALFPLVDAAFAQ 235 Query: 233 RRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 RRKTLR +L G E +L AGI+ R E L +++F RI Sbjct: 236 RRKTLRAALGSFFGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281 >gi|260663712|ref|ZP_05864600.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN] gi|260551763|gb|EEX24879.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN] Length = 295 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 146/292 (50%), Gaps = 22/292 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + I++ Y I KK GQNFL + ++L I ++G VIEIG G G LT+ L Sbjct: 7 SPSRTRAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120 A +V+ +E D+ P+L D+ + + N + ++ D LK + + + P++ Sbjct: 67 A-QAAGEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVK 124 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I + +LF +++ W ++ ++ QKEV +R+ A+ + YG L++ + Sbjct: 125 VVANLPYYITSPILFALLASQV---EWAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDY 181 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237 R + F++S F P+P V S ++ +P + L + + F RRK+L Sbjct: 182 RMDVKVAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSL 241 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK + G++ +L + I+ R E LS+ DF + N + + + Sbjct: 242 WNNLKTIVGKDEDRLGKVKEVLDRLEIDPQTRPERLSLVDFINLANAMHEKK 293 >gi|21230265|ref|NP_636182.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769742|ref|YP_244504.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. 8004] gi|27151570|sp|Q8PCE3|RSMA_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|81304304|sp|Q4UR39|RSMA_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21111810|gb|AAM40106.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575074|gb|AAY50484.1| dimethyladenosine transferase [Xanthomonas campestris pv. campestris str. 8004] Length = 262 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 129/257 (50%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L D ++ +L+II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + + FG+RRKTLR +L + AG+ + Sbjct: 183 VDSAVVRLVPRDAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAGVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|256848354|ref|ZP_05553797.1| dimethyladenosine transferase [Lactobacillus coleohominis 101-4-CHN] gi|256714952|gb|EEU29930.1| dimethyladenosine transferase [Lactobacillus coleohominis 101-4-CHN] Length = 298 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 26/303 (8%) Query: 1 MTM----NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56 M M S + I+ Y I KK GQNFL DLN+L I +++ VIEIG+ Sbjct: 1 MKMAISEIGSSQRTREIIKKYGIHAKKGFGQNFLTDLNVLTGIVDAAQITKQDNVIEIGS 60 Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEK 111 G G LT+ L A +V+ +E D P+L D+ S + N +++I D LK + E+ Sbjct: 61 GLGALTEQLAKS-AGEVVALEIDTDLLPLLADVLSPYKN-VKVINQDVLKANLPKLIQEE 118 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 F + S P++++ANLPY I + +L N +++ W ++ ++ QKEV ER+TA+ + Y Sbjct: 119 FTDPSRPVKVVANLPYYITSPILMNLLNSSVQ---WAAICVMMQKEVAERLTAKVGTKQY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQE 228 G L++ + A + F +S H F P+P V S ++ P + P L + + Sbjct: 176 GALTLAIEYSMTAQLAFGVSRHSFVPAPNVDSAIVVLTPRTTALTEQPFDQAKLFSLIKT 235 Query: 229 AFGKRRKTLRQSLKRL---------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F RRK L +LK L ++ L I + R E LS+ F ++ N L + Sbjct: 236 CFAHRRKNLWNNLKPLMRKNKTKQQAVKDALDHLQIASTDRPETLSLLQFIQLANGLHEK 295 Query: 280 QDI 282 Q I Sbjct: 296 QII 298 >gi|222152162|ref|YP_002561322.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402] gi|254807873|sp|B9E8V8|RSMA_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|222121291|dbj|BAH18626.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402] Length = 296 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 147/291 (50%), Gaps = 22/291 (7%) Query: 1 MTMNNKSHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M N+ + +T +L Y KK +GQNFL+D N+++ I E++G VIEIG G Sbjct: 1 MEYNDIATPTRTKQLLDQYGFKFKKSLGQNFLVDTNVIRNIIEAAGIDKTSGVIEIGPGM 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114 G+LT+ L A++V+ E DQ+ PIL + S + N + +I +D LK D E + + Sbjct: 61 GSLTEQLAKH-AKQVLAFEIDQRLIPILGETLSPYDN-VTVINEDILKADVASAIETYLH 118 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I ++ANLPY I T +L + + S ++ QKEVGER++A ++ YG L Sbjct: 119 HCDEIFVVANLPYYITTPILMGLLEKNLN---INSYVVMMQKEVGERLSAIPSTKAYGSL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 S+ + T + + VF P P V S V+ P + K+T+ AF + Sbjct: 176 SIAVQYYTDVKRIMVVPKGVFMPPPNVDSLVVKLTTLERPRVDVEDENLFFKLTRGAFVQ 235 Query: 233 RRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 RRKT+ + L + L +G+ + R E+L++ D+ +++N Sbjct: 236 RRKTILNNYMSLIQDSKEHKSRIIEWLEASGVAPSRRGESLNLNDYAQLSN 286 >gi|50513341|pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase gi|50513342|pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 132/256 (51%), Gaps = 8/256 (3%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ L Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARL 59 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S + Sbjct: 60 Q-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS---YTD 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV S V Sbjct: 116 AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAV 175 Query: 206 IHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 + +PH P P + L +IT EAF +RRKT+R SL L +L GI+ +RAEN Sbjct: 176 VRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAEN 235 Query: 264 LSIEDFCRITNILTDN 279 +S+ +C++ N L +N Sbjct: 236 ISVAQYCQMANYLAEN 251 >gi|325917326|ref|ZP_08179544.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937] gi|325536460|gb|EGD08238.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937] Length = 262 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 126/257 (49%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + ++ L II D L VDF N +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEAAAPI-GELSIIHRDVLSVDFTDVAN-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + AG+ + Sbjct: 183 VDSAVVRLVPRDPATVMINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAGVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|300114051|ref|YP_003760626.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113] gi|299539988|gb|ADJ28305.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113] Length = 264 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 7/269 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ +K GQ+FL D +++++ + G ++EIG G G LT LL ++ Sbjct: 1 MNLLGHRARKRFGQHFLHDQQVIERLIRAIKPKLGDLMVEIGPGQGALTLPLLH-CLGQL 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 IE D+ L + + L + D+L DF + + +R++ NLPYNI T L Sbjct: 60 EAIELDRDLAAYLIERCAS-EGNLRLHNVDSLTFDFRTLAHDNRRLRVVGNLPYNISTPL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + E + + Q+EV R+ A+ YGRLSV+ + + +F + Sbjct: 119 LFHLLGQVG---ILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSG 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S V+ PH + + E+L ++ +AF +RRKTL +LK L L Sbjct: 176 AFVPPPKVDSMVVRLRPHQPSLAPNISHEALNRVVSQAFSQRRKTLANALKGLLSSAELI 235 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 GI+ R E +S+E + +T Q Sbjct: 236 ALGIDPRQRPETVSLEHYLALTRYWLQAQ 264 >gi|291547608|emb|CBL20716.1| dimethyladenosine transferase [Ruminococcus sp. SR1/5] Length = 291 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 19/292 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N +++ +L Y + +K GQNFL+D ++L+KI ESSG ++EIG G G +T Sbjct: 6 LGNPKYTI-EVLQKYHFVFQKRFGQNFLIDEHVLEKIIESSGITKDDFILEIGPGIGTMT 64 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPI 119 Q L V D PILKD N + +I +D LK D +K + P+ Sbjct: 65 QYLAEAAREVAAVE-IDSSLIPILKDTLKDWDN-VSVINNDILKTDIKKIADEKNGGKPV 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + +S+T++ QKEV +R+ + YG LS+ Sbjct: 123 KVVANLPYYITTPIIMGLFEKNVP---VDSITVMVQKEVADRMQVGPGTKDYGALSLAVQ 179 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL 237 + K ++ ++ P+ F P PKV S VI + P + + ++ + +F +RRKTL Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIKLTRYEKPPVDVKDEGLMFRLIRASFNQRRKTL 239 Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL + E++ ++ + N+R E L++E F + N + D ++ Sbjct: 240 VNGIRNSGDFSLSKEEIEDVFNRCDLPLNIRGEALTLEQFAMLANCIYDEKN 291 >gi|227542448|ref|ZP_03972497.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181646|gb|EEI62618.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 286 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 20/286 (6%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MN+ ++ + + I+P K +GQNFL D N ++ I ++G VIE+G G Sbjct: 1 MNDSPRLLGPAEIRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF 113 G+LT L+ V +E D++ L + H RL ++ +DAL V E F Sbjct: 61 LGSLTLGLVGE-VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNEDALAVTREA-F 118 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + P I+ANLPYN+ +L + + P + ++ Q+EV +R++A + YG Sbjct: 119 GEAEPTAIVANLPYNVAVPVLLHLLRT---VPSIRRVLVMVQEEVADRLSASPGTKIYGV 175 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGK 232 SV + + + HVF+P+P V+S ++ NP E L + AF + Sbjct: 176 PSVKASYFGEVKKAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEVLFPLVDAAFAQ 235 Query: 233 RRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 RRKTLR +L G E +L AGI+ R E L +++F RI Sbjct: 236 RRKTLRAALGSFFGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281 >gi|285019524|ref|YP_003377235.1| dimethyladenosine transferase [Xanthomonas albilineans GPE PC73] gi|283474742|emb|CBA17241.1| probable dimethyladenosine transferase protein [Xanthomonas albilineans] Length = 264 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 8/261 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + KK +GQ+FL D + + I + G ++EIG G G +T LL ++ VI Sbjct: 7 FGAPAKKSLGQHFLSDRHYIDNIVRAVDPKPGDRLVEIGPGQGAITFPLLRR-HGQLTVI 65 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ L ++ + L I+ D L VDF IR++ NLPYNI + +LF+ Sbjct: 66 EFDRDLIEPL-TTAAANLGELTILHRDVLSVDFGAMAGDGR-IRLVGNLPYNISSPILFH 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + QKEV +R+ A S YGRLSV+ + T +F + P F Sbjct: 124 ALDHAAA---ITDMHFMLQKEVVDRMAAAPGSKVYGRLSVMLQAYCEVTALFVVPPGAFR 180 Query: 197 PSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ +P + + AFG+RRKTLR +L + AG Sbjct: 181 PPPKVDSAVVRLVPRTAQEVGIADPRRFADVVRAAFGQRRKTLRNALNGVCDAPQFEAAG 240 Query: 255 IETNLRAENLSIEDFCRITNI 275 + + RAE L++ DF R+ N+ Sbjct: 241 VRADARAEQLAVADFVRLANL 261 >gi|303256197|ref|ZP_07342213.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47] gi|331001253|ref|ZP_08324879.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT 11859] gi|302860926|gb|EFL84001.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47] gi|329568980|gb|EGG50776.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT 11859] Length = 274 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 91/267 (34%), Positives = 144/267 (53%), Gaps = 9/267 (3%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + +L H+K +K GQNFL D + KIAE+ +G +IEIG G LT+ L+ G Sbjct: 1 MAEVLKHHK--ARKRFGQNFLNDDFWINKIAEAVDPKEGQKIIEIGPGQAALTKELIA-G 57 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+ + +E D+ L+ + P +L +++ DALK D+ F IR++ NLPYNI Sbjct: 58 AKHIYCVEIDRDLAAWLRTKFT--PEQLTVLEADALKFDWRD-FAAEEKIRVVGNLPYNI 114 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF + QKEV +R+ A S YGRLSV+ + + +FD Sbjct: 115 SSPLLFKL---SEISDRVVDQHFMLQKEVVDRMVAAPGSKAYGRLSVMLQRKYRMVKLFD 171 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P+PKV S+V+ IP NP E+ ++ +F RRKTL+ +L + + Sbjct: 172 VPPEAFTPAPKVMSSVVRMIPIQNPAEVDEETFHQVVAASFAMRRKTLKNNLAKWISPEM 231 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 + +AGI+ RAE++ +E+F R+ ++ Sbjct: 232 MEEAGIKPEQRAESVPLENFIRLARLV 258 >gi|256374794|ref|YP_003098454.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827] gi|255919097|gb|ACU34608.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827] Length = 298 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 16/279 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N ++KI ++ V+E+G G G+LT LL Sbjct: 22 PADVRRLAAELDVRPTKKLGQNFVHDPNTVRKIVAAANLRPDDVVLEVGPGLGSLTLALL 81 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A ++ +E D L + + L ++ DA++V + +P ++ Sbjct: 82 PACAD-LVAVEIDPVLAARLPTTAAERAPSLAANLSVVTADAMRVTAAQL--PHAPTALV 138 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + ++ P + ++ Q EV +R+ A S YG SV W Sbjct: 139 ANLPYNVAVPVVLHLLAE---LPSLRTGLVMVQSEVADRMAAGPGSKVYGVPSVKLAWYA 195 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 A + VF+P P V S ++ F P+ E L + AF +RRKTLR +L Sbjct: 196 DARRAGPVGRSVFWPVPNVDSALVGFTRRDAPLSDVPREVLFPLVDAAFAQRRKTLRAAL 255 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E L AG++ + R E LS+ DF RI + Sbjct: 256 SGWAGSAAEAERRLVAAGVDPSARGEQLSVADFVRIAEV 294 >gi|306824012|ref|ZP_07457386.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679] gi|309801986|ref|ZP_07696100.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022] gi|304553010|gb|EFM40923.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679] gi|308221434|gb|EFO77732.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022] Length = 316 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 130/286 (45%), Gaps = 20/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 25 AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + ++ R +I DAL V E F+ Sbjct: 85 ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 144 LVANLPYNVATPILLTLLERFDNLHSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 200 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL----------NPIPCCLESLKKITQEAF 230 A I +VF+P+P V S ++ F + N E++ ++ AF Sbjct: 201 YGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSANGPAAKRETVFRLIDAAF 260 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G+RRKTL +L+R + AGI+ R E L+I++F + L Sbjct: 261 GQRRKTLHAALRRFVPDETFDMAGIDPTRRGETLTIDEFVALARAL 306 >gi|171741750|ref|ZP_02917557.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC 27678] gi|171277364|gb|EDT45025.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC 27678] Length = 316 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 20/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 25 AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + ++ R +I DAL V E F+ Sbjct: 85 ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 144 LVANLPYNVATPILLTLLERFDNLHSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 200 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL----------NPIPCCLESLKKITQEAF 230 A I +VF+P+P V S ++ F + + E++ ++ AF Sbjct: 201 YGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAAF 260 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G+RRKTL +L+R + AGI+ R E L+I++F + L Sbjct: 261 GQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 306 >gi|148652714|ref|YP_001279807.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1] gi|148571798|gb|ABQ93857.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1] Length = 296 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 140/294 (47%), Gaps = 18/294 (6%) Query: 1 MTMNN-KSHSLKTILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MT ++ H L L K P+K GQNFL D +I+ +I ++ G ++EIG G Sbjct: 1 MTQSDITKHPLHNTLQRAAKHQPRKRFGQNFLHDASIISEIVDAIGLNRDDNLVEIGPGM 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI-- 115 G LT+ LL + VIE D+ L+ I + I+ +A++ D+ ++ Sbjct: 61 GALTEPLLEQ-VDAMTVIELDRDLAGSLRIRIGANSHPNFTIVNANAMQFDYHSLYDADS 119 Query: 116 --SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +R++ NLPYNI T LLF + E + + QKEV ERITA+ S YGR Sbjct: 120 ETPKKLRVVGNLPYNISTPLLFTLLEYAD---IIEDMHFMLQKEVVERITAEVGSKIYGR 176 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFG 231 LSV+ + + + F P PKVTS V PH P+ E L + +E F Sbjct: 177 LSVIMQYFCDTQYLLTVPRGAFNPPPKVTSAVFRLRPHQVKPVQADDEKLFALVVRETFN 236 Query: 232 KRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RRKTLR K+ + L GI+ N R E L + DF ++N++ Q Sbjct: 237 HRRKTLRAIFKQSSLMPTLTDEDLASIGIDGNARPETLDVNDFVALSNLVIAKQ 290 >gi|153206938|ref|ZP_01945756.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177'] gi|212219490|ref|YP_002306277.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154] gi|226729772|sp|B6J641|RSMA_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120577011|gb|EAX33635.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177'] gi|212013752|gb|ACJ21132.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154] Length = 258 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 99/261 (37%), Positives = 142/261 (54%), Gaps = 8/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E Sbjct: 3 KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ Sbjct: 62 IDRDLVAFLQKKYNQQKN-ITIYQNDALQFDFSS-AKTDKPLRVVGNLPYNISTPLLFHL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 S E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTP 176 Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236 Query: 256 ETNLRAENLSIEDFCRITNIL 276 LR + L++EDF +I+NIL Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257 >gi|241888685|ref|ZP_04775992.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379] gi|241864708|gb|EER69083.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379] Length = 286 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M IL + KK +GQNFL+D NIL +I + +G + VIEIG G G+LT Sbjct: 1 MIGTPKKTFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNGNVGVIEIGPGIGSLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118 + L A+KVI E D + PIL + + +PN +EII +D LKVD +K Sbjct: 61 EALAK-KAKKVISFEIDGRLLPILSETLADYPN-VEIINNDILKVDVDKIIAEKMSDCEK 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I ++ANLPY I T +L + I + ++ QKEV R+ A+ + Y L++L Sbjct: 119 IMVVANLPYYITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILL 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + T +F + VF P+P V S V+ + K + F +RRKTL Sbjct: 176 NYYTNVEYLFTVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLL 235 Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269 +L G++ IE R+E LS+ +F Sbjct: 236 NNLISSYGKDKKQDLQNACVDSDIEPGRRSETLSLVEF 273 >gi|300705123|ref|YP_003746726.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum CFBP2957] gi|299072787|emb|CBJ44142.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum CFBP2957] Length = 281 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 119/265 (44%), Gaps = 11/265 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + ++EIG G G LT L+ + V Sbjct: 9 HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ ++L + DAL DF P+RI+ NLPYNI + LLF Sbjct: 68 VELDRDLVARLQRRFG---DKLVVHAGDALAFDFGALHVPGRPLRIVGNLPYNISSPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + QKEV ER+ A S + RLSV+ R ++ D+ P F Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181 Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ IP P + +L + AF +RRK LR +L L Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVALAFSQRRKVLRNTLGSLREAIDFD 241 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 G + RAE + + DF + N L Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANAL 266 >gi|165918726|ref|ZP_02218812.1| dimethyladenosine transferase [Coxiella burnetii RSA 334] gi|212213440|ref|YP_002304376.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212] gi|215919310|ref|NP_820957.2| dimethyladenosine transferase [Coxiella burnetii RSA 493] gi|218511667|sp|Q83AC2|RSMA_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729773|sp|B6J3A6|RSMA_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|165917554|gb|EDR36158.1| dimethyladenosine transferase [Coxiella burnetii RSA 334] gi|206584195|gb|AAO91471.2| dimethyladenosine transferase [Coxiella burnetii RSA 493] gi|212011850|gb|ACJ19231.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212] Length = 258 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 99/261 (37%), Positives = 142/261 (54%), Gaps = 8/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E Sbjct: 3 KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ Sbjct: 62 IDRDLVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 S E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTP 176 Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236 Query: 256 ETNLRAENLSIEDFCRITNIL 276 LR + L++EDF +I+NIL Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257 >gi|83032434|gb|ABB97063.1| mitochondrial transcription factor B-like protein [Acanthamoeba castellanii] Length = 307 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 17/298 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + ++ Y++ K + QNF+LDLN+ K+A ++G L G TVIE+G GPG+ Sbjct: 1 MLKLPPMPTPRELVRLYRLSAVKELSQNFILDLNVTDKLARAAGPLRGSTVIEVGPGPGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--- 117 LT+ LLT GARKVIV+EKD++F P L+ + RLE++ D LK+D Sbjct: 61 LTRSLLTNGARKVIVVEKDKRFMPALETLQQASGGRLELVFGDMLKIDERDLLKNEPKAE 120 Query: 118 ------PIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQK 166 P+RI+ NLP+ + T LL W+ + S+TL+FQ EVG+RI A+ Sbjct: 121 NWADESPVRIVGNLPFAVATELLLKWLRQIPEREGPFAHGRASMTLMFQLEVGKRIEARS 180 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI 225 + YGRLSV+T A F++ VF P PKVT T++ P + P+ P ++ L+ + Sbjct: 181 GTSEYGRLSVMTQQSCTAQTCFNVPASVFVPPPKVTGTMVRIEPRVTPLAPAPVKELEVV 240 Query: 226 TQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 ++ FG+RRK L ++ L G L+ +AG++ R + L++E++C + + D Sbjct: 241 CRQVFGQRRKMLSNAITTLGEGSLPLIARAGLDPTKRPDALTVEEWCSLARAYKEWMD 298 >gi|134097408|ref|YP_001103069.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL 2338] gi|291004602|ref|ZP_06562575.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL 2338] gi|133910031|emb|CAM00143.1| dimethyladenosine transferase (rRNA methylation) [Saccharopolyspora erythraea NRRL 2338] Length = 282 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 14/278 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF+ D N +++I ++ V+E+G G G+LT LL Sbjct: 4 PADVRRLAGELGIRPTKKLGQNFVHDPNTVRRIVAAASLTAEDVVLEVGPGLGSLTLALL 63 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 + A V +E D L+ +S++ RL +++ DAL+V + + P ++ Sbjct: 64 PV-AGAVTAVEIDPVLAARLERTASEYSPALAGRLRVVEADALRVRADDLGD-RRPTALV 121 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + ++ P ++ Q EV +R+ A+ + YG S W Sbjct: 122 ANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQSEVADRMAARPGNRTYGVPSAKAAWFA 178 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + +VF+P P V S ++ F P + ++ AF +RRKTLR +L Sbjct: 179 DVRRAGPVPRNVFWPVPNVDSGLVSFTRVEPPSEVARADVFRVVDAAFAQRRKTLRAALS 238 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E LL AG++ R E L I DF RI Sbjct: 239 GWAGSAARAERLLRAAGVDPAARGEQLEIADFARIAEA 276 >gi|289177753|gb|ADC84999.1| Dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis BB-12] Length = 331 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 17/285 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI +G G V+E+G G G+LT +L Sbjct: 48 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 107 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS--PIR 120 GA + +E D L ++ NR ++ DALKV + ++ Sbjct: 108 ETGAD-LTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 166 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV ER++AQ S YG SV W Sbjct: 167 LVANLPYNVATPILLTLLERFGNLDSFLVMV---QKEVAERLSAQPGSKVYGTPSVKLAW 223 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFGKR 233 A + +I +VF+P+P V S ++ F H P + + ++ +F +R Sbjct: 224 YGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFAQR 283 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RKTL +L+++ +AGI+ R E L I++F + + Sbjct: 284 RKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALATACKE 328 >gi|83945291|ref|ZP_00957640.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633] gi|83851461|gb|EAP89317.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633] Length = 284 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 116/288 (40%), Positives = 163/288 (56%), Gaps = 11/288 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ ++ L+ +++ + + K GQ++LLDLN+ KIA G + TV E+G GPG Sbjct: 1 MSL-DQLPPLREVIAEHGLGADKRFGQHYLLDLNLTAKIARLCGDMSEATVFEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL+ GA +V VIEKD++F P L IS P R II+ DALKVD S I Sbjct: 60 LTRGLLSEGAARVTVIEKDRRFIPALAQISDAVPGRFSIIEADALKVDESTLPFEGSRI- 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + +NLPYN+GT LL W+ AD P +W L L+FQKEV ER+ A+ YGRL++L Sbjct: 119 LASNLPYNVGTALLIKWLEAD--PIWWTRLVLMFQKEVAERVVARAGDKQYGRLAILAAA 176 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239 K+ F + F P PKV S V+ P L++L +T+ AFG+RRKTLR+ Sbjct: 177 VAKSRYAFTVPARAFTPPPKVDSAVVVIEPLPEAQRFTDLKALSIVTESAFGQRRKTLRK 236 Query: 240 SL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 SL R+ E LL +AGI+ RAE ++ E F + +D Sbjct: 237 SLGPAASQTRVSPEALLEEAGIDPGARAETIAPEGFFTLARAWRAARD 284 >gi|183602652|ref|ZP_02964016.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis HN019] gi|219684013|ref|YP_002470396.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191618|ref|YP_002969012.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197023|ref|YP_002970578.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218070|gb|EDT88717.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis HN019] gi|219621663|gb|ACL29820.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis AD011] gi|240250010|gb|ACS46950.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251577|gb|ACS48516.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794610|gb|ADG34145.1| dimethyladenosine transferase [Bifidobacterium animalis subsp. lactis V9] Length = 297 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 17/285 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI +G G V+E+G G G+LT +L Sbjct: 14 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS--PIR 120 GA + +E D L ++ NR ++ DALKV + ++ Sbjct: 74 ETGAD-LTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV ER++AQ S YG SV W Sbjct: 133 LVANLPYNVATPILLTLLERFGNLDSFLVMV---QKEVAERLSAQPGSKVYGTPSVKLAW 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFGKR 233 A + +I +VF+P+P V S ++ F H P + + ++ +F +R Sbjct: 190 YGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFAQR 249 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RKTL +L+++ +AGI+ R E L I++F + + Sbjct: 250 RKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALATACKE 294 >gi|296455131|ref|YP_003662275.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JDM301] gi|296184563|gb|ADH01445.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JDM301] Length = 322 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 82/294 (27%), Positives = 133/294 (45%), Gaps = 23/294 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 28 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 88 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 203 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-------------ESLKKITQ 227 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 204 YGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGAQRELVFRLID 263 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 264 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 317 >gi|184154665|ref|YP_001843005.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956] gi|227514301|ref|ZP_03944350.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931] gi|183226009|dbj|BAG26525.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956] gi|227087349|gb|EEI22661.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931] Length = 295 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 147/292 (50%), Gaps = 22/292 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + I++ Y I KK GQNFL + ++L I ++G VIEIG G G LT+ L Sbjct: 7 SPSRTRAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120 A +V+ +E D+ P+L D+ + + N + ++ D LK + + + P++ Sbjct: 67 A-QAAGEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVK 124 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I + +LF +++ W ++ ++ QKEV +R+ A+ + YG L++ + Sbjct: 125 VVANLPYYITSPILFALLASQV---EWAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDY 181 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237 R + F++S F P+P V S ++ +P + L + + F RRK+L Sbjct: 182 RMDVKVAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSL 241 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK + G++ +L + I++ R E LS+ DF + N + + + Sbjct: 242 WNNLKTIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293 >gi|312133647|ref|YP_004000986.1| ksga [Bifidobacterium longum subsp. longum BBMN68] gi|311772906|gb|ADQ02394.1| KsgA [Bifidobacterium longum subsp. longum BBMN68] Length = 307 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLVDA 249 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302 >gi|212715125|ref|ZP_03323253.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM 16992] gi|212661806|gb|EEB22381.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM 16992] Length = 309 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 20/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 22 AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + +R ++ DAL V E FN Sbjct: 82 ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFNNDDSFT 140 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R++ + S YG SV W Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEKPGSKIYGTPSVKLAW 197 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--------NPI--PCCLESLKKITQEAF 230 A + I +VF+P+P V S ++ F + NP E++ ++ AF Sbjct: 198 YGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTSSANNPDGSVVDRETVFRLIDAAF 257 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+RRKTL +LK++ +AGI+ R E L+I++F + + + Sbjct: 258 GQRRKTLHAALKKVVPSEAFERAGIDPTRRGETLTIDEFVALARAMGE 305 >gi|23465240|ref|NP_695843.1| dimethyladenosine transferase [Bifidobacterium longum NCC2705] gi|33516942|sp|Q8G6I3|RSMA_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23325870|gb|AAN24479.1| dimethyladenosine transferase ribosomal RNA adenine dimethylase [Bifidobacterium longum NCC2705] Length = 308 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 82/294 (27%), Positives = 133/294 (45%), Gaps = 23/294 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-------------ESLKKITQ 227 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGTQRELVFRLID 249 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 250 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 303 >gi|227509274|ref|ZP_03939323.1| dimethyladenosine transferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512287|ref|ZP_03942336.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577] gi|227084462|gb|EEI19774.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577] gi|227191272|gb|EEI71339.1| dimethyladenosine transferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 301 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 20/288 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + IL+ Y++ KK +GQNFL+DLNIL I E++ VIEIG G G LT+ L Sbjct: 14 SPARTQAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQL 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121 A +V+ E D++ P+L + S + N +EII D LK + + F P+++ Sbjct: 74 AK-AANQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKV 131 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + ++ P +ES+ ++ QKEV ER+ A+ + YG LSV+ + Sbjct: 132 VANLPYYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQ 188 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + F + F P PKV S ++ P ++ P + + F +RKTL Sbjct: 189 NDVDISFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWN 248 Query: 240 SLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L + G+ +L I R E L +E F +TN + Sbjct: 249 NLLGVFGKQESVKGQIKKVLDDLSINAANRPEQLQVEQFVALTNAFHE 296 >gi|283457073|ref|YP_003361637.1| dimethyladenosine transferase [Bifidobacterium dentium Bd1] gi|283103707|gb|ADB10813.1| KsgA Dimethyladenosine transferase [Bifidobacterium dentium Bd1] Length = 308 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 20/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 17 AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 76 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + ++ R +I DAL V E F+ Sbjct: 77 ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 135 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 136 LVANLPYNVATPILLTLLERFDNLHSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 192 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL----------NPIPCCLESLKKITQEAF 230 A I +VF+P+P V S ++ F + + E++ ++ AF Sbjct: 193 YGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAAF 252 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G+RRKTL +L+R + AGI+ R E L+I++F + L Sbjct: 253 GQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 298 >gi|294793453|ref|ZP_06758590.1| dimethyladenosine transferase [Veillonella sp. 3_1_44] gi|294455023|gb|EFG23395.1| dimethyladenosine transferase [Veillonella sp. 3_1_44] Length = 284 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGAD- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + II D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245 F P+P VTS+VI + P + ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWA 280 >gi|77919444|ref|YP_357259.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380] gi|118600881|sp|Q3A3G8|RSMA_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77545527|gb|ABA89089.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380] Length = 264 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 139/269 (51%), Gaps = 15/269 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 PKK GQNFL D ++ I ++ V+EIG G G LT LL AR + VIE Sbjct: 2 NHRPKKRFGQNFLQDRQVVDGIFAAADLQPEDRVLEIGPGLGALTDRLLPEVAR-LHVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ ++ ++L + DALK+D+ P ++IANLPYNI ++++F Sbjct: 61 IDRDLGAGLQ---ARDEDKLVVHLGDALKLDWTALLT-DPPYKLIANLPYNISSQIVFKI 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + L L+FQ+EVGER+ A S +YG LSVL + + P F+P Sbjct: 117 LDHR---HLFSRLVLMFQQEVGERLCAGPGSKNYGILSVLCQVWFDIRRVLRVPPGAFYP 173 Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRL-----GGENLL 250 PKV S V+ F P + + +++ + AF +RRKTLR SL G E L Sbjct: 174 PPKVHSAVLCFDALAQPRIVVEDQQFFRRVVKAAFAQRRKTLRNSLTGAGLGFDGLEVSL 233 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 AGI+ RAE LS+E+F ++ ++ + Sbjct: 234 LDAGIDPGRRAETLSLEEFGKLAQLIQPH 262 >gi|257794266|ref|ZP_05643245.1| dimethyladenosine transferase [Staphylococcus aureus A9781] gi|258407216|ref|ZP_05680361.1| dimethyladenosine transferase [Staphylococcus aureus A9763] gi|258420817|ref|ZP_05683753.1| dimethyladenosine transferase [Staphylococcus aureus A9719] gi|258424472|ref|ZP_05687351.1| dimethyladenosine transferase [Staphylococcus aureus A9635] gi|257788238|gb|EEV26578.1| dimethyladenosine transferase [Staphylococcus aureus A9781] gi|257841174|gb|EEV65623.1| dimethyladenosine transferase [Staphylococcus aureus A9763] gi|257843209|gb|EEV67622.1| dimethyladenosine transferase [Staphylococcus aureus A9719] gi|257845341|gb|EEV69376.1| dimethyladenosine transferase [Staphylococcus aureus A9635] Length = 299 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 146/294 (49%), Gaps = 25/294 (8%) Query: 1 MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 M M + + +L Y KK +GQNFL+D+NI+ I ++S VIEIG Sbjct: 1 MKMLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EK 111 G G+LT+ L A++V+ E DQ+ P+L D S + N + +I +D LK + E Sbjct: 61 PGMGSLTEQLA-RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVEN 118 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I ++ANLPY I T +L N + D + ++ QKEVGER+ A+ S Y Sbjct: 119 HLQDCEKIMVVANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229 G LS++ + T+ + + + VF P P V S V+ + P+ E+ K+ + A Sbjct: 176 GSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAA 235 Query: 230 FGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 F +RRKT+ + + + L QAGI+ R E LSI+DF ++ Sbjct: 236 FAQRRKTINNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 289 >gi|93006282|ref|YP_580719.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5] gi|119365050|sp|Q1QAR8|RSMA_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|92393960|gb|ABE75235.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5] Length = 287 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 139/277 (50%), Gaps = 13/277 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + S+ L K P+K GQNFL D +++++I ES +IEIG G G LT+ LL Sbjct: 8 AQSITNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLL 67 Query: 67 TLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIAN 124 + V+E D+ L+ I + EII+++A+ VD+ + + + +R++ N Sbjct: 68 AE-VDAMTVVELDRDLADSLRIRIGANSHPNFEIIKNNAMHVDYRELYSDERGKLRVVGN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI T +LF+ +S E + + QKEV ERITA S YGRLSV+ + Sbjct: 127 LPYNISTPILFHLLSYAD---VIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHT 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK-ITQEAFGKRRKTLRQSLK 242 + + F P PKVTS V PH + P+ E + +E F RRKTLR K Sbjct: 184 DYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRKTLRAIFK 243 Query: 243 RL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E+ I+ R E LS++DF ++N Sbjct: 244 KSTLLPTLSEDDFAACAIDPQARPETLSVKDFVNLSN 280 >gi|302877393|ref|YP_003845957.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2] gi|302580182|gb|ADL54193.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2] Length = 262 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 94/263 (35%), Positives = 135/263 (51%), Gaps = 9/263 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK GQNFL+D NI+ I + ++EIG G G LT+ LL A + V+E Sbjct: 4 HKAKKKFGQNFLVDQNIIADIISAIRPEADDNLVEIGPGLGALTRPLLKSLAH-LHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ Q ++ I DALK D ++ +P+RI+ NLPYNI + LLF + Sbjct: 63 DRDIIARLEADYPQPHTKMTIHAGDALKFD---LASLGAPLRIVGNLPYNISSPLLFYF- 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + Q EV ER+ A ++P YGRLSV+ +R + D+ P F P+ Sbjct: 119 --AEYADRITDMHFMLQNEVVERMVADHSTPAYGRLSVMLQYRFFMEKLLDVPPDSFRPA 176 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S ++ IP + + +I AFG+RRKTLR +LK E GI Sbjct: 177 PKVNSAIVRMIPIPADQIVVKNEKLFGEIVGTAFGQRRKTLRNTLKSFLNEAEFENLGIN 236 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 LRAENLS+++F RI + D Sbjct: 237 PQLRAENLSVDEFARIAAYVDDR 259 >gi|320532470|ref|ZP_08033295.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135315|gb|EFW27438.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str. F0337] Length = 364 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF+ D +++I +S+G TV+EIG G G+LT LL Sbjct: 67 PTEVRGLSQALGIRPTKTLGQNFVHDAGTVRRIVKSAGVRPDDTVLEIGPGLGSLTLALL 126 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIR 120 GAR VI +E D L D Q RL +I+ DAL + + + + P R Sbjct: 127 EAGAR-VIAVEIDPALARALPVTVADRMPQAAGRLSLIEADALSITGPQSLDETGNPPTR 185 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ +L + A P ES+T++ Q EV +R+ A+ S YG S+ W Sbjct: 186 LVANLPYNVAVPVLLTALEA---LPSLESVTVMVQSEVADRLAAEPGSRTYGVPSLKAAW 242 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 A IS HVF+P P V S ++ + P E + + AF +RRKTLR+ Sbjct: 243 YAAARRTLTISRHVFWPVPNVDSALVELVRRRPPATRATREQVFAVVDAAFAQRRKTLRK 302 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +L +L G E+ L AGI+ R E L I F + +L Sbjct: 303 ALAKLAGGADAAESALRAAGIDPARRGETLDITAFAALAEVLQ 345 >gi|299782801|gb|ADJ40799.1| Dimethyladenosine transferase [Lactobacillus fermentum CECT 5716] Length = 295 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 147/292 (50%), Gaps = 22/292 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + I++ Y I KK GQNFL + ++L I ++G VIEIG G G LT+ L Sbjct: 7 SPSRTRAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120 A +V+ +E D+ P+L D+ + + N + ++ D LK + + + P++ Sbjct: 67 A-QAAGEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVK 124 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I + +LF +++ W ++ ++ QKEV +R+ A+ + YG L++ + Sbjct: 125 VVANLPYYITSPILFALLASQV---EWAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDY 181 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237 R + F++S F P+P V S ++ +P + L + + F RRK+L Sbjct: 182 RMDVKVAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFCLIRGCFAHRRKSL 241 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK + G++ +L + I++ R E LS+ DF + N + + + Sbjct: 242 WNNLKTIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293 >gi|307824413|ref|ZP_07654638.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96] gi|307734397|gb|EFO05249.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96] Length = 282 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 148/285 (51%), Gaps = 30/285 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQNFL D NI+ I S + G +EIG G G LT+ LL G R + V+E Sbjct: 3 HTPRKRFGQNFLHDHNIIYNIISSIQARPGQHWVEIGPGQGALTEPLLNEGVR-LDVVEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------------------- 116 D+ +L++ Q+PN L+I DAL+ DF Sbjct: 62 DRDLVVLLREKFKQYPN-LQIHSADALRFDFSSLAAGGXXXXXXXXARKAPEGARAGIAR 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +R+I NLPYNI T L+F+ + E + + QKEV +RI A S YGRLS Sbjct: 121 DEKLRVIGNLPYNISTPLMFHLLDNAYC---IEDMHFMLQKEVVDRICAAPGSKKYGRLS 177 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKR 233 V+ + ++FD+ P F P+P+V S ++ +PH P + L ++ +AF +R Sbjct: 178 VMMQYYCATELLFDVPPESFDPAPQVMSAIVRLVPHQQPPVAVNDMSKLNRVVTQAFSQR 237 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 RKTLR SLK+L E + GI+ LRAE++S+ +F R++N+L + Sbjct: 238 RKTLRNSLKKLITEEEIVALGIDPTLRAESISLAEFARLSNLLQE 282 >gi|88810560|ref|ZP_01125817.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231] gi|88792190|gb|EAR23300.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231] Length = 271 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 97/267 (36%), Positives = 138/267 (51%), Gaps = 8/267 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + ++ GQNFL D +IL ++ +S G IEIG+G G LT+ LL AR ++ IE Sbjct: 3 QHRARRRFGQNFLHDPSILHRMVDSIDPRPGQCCIEIGSGLGALTRPLLER-ARALVAIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ LEIIQ DAL +DF F +R+I NLPYNI T LLF+ Sbjct: 62 LDRDLIEPLRRCCDG-AGELEIIQADALGLDFACFRQGPEKLRVIGNLPYNIATPLLFHV 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 E L QKEV ER+ A YGRLSV+ +R + +FD+ P+ F P Sbjct: 121 TGFAEH---LEDAHFLLQKEVVERMAAGAGQASYGRLSVMIQYRCRVEPLFDVLPNAFRP 177 Query: 198 SPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 PKVTS+ + P P L ++ AFG+RRKTLR +L+ + E + AG Sbjct: 178 VPKVTSSWVRLTPLSRPPRGTWDDEPRLAEVVARAFGQRRKTLRNALRGMISEQQIKAAG 237 Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281 IE + RAE + ++ + R+ ++ Sbjct: 238 IEPSARAETIDLDHYLRLAEVMAKRSP 264 >gi|313200361|ref|YP_004039019.1| dimethyladenosine transferase [Methylovorus sp. MP688] gi|312439677|gb|ADQ83783.1| dimethyladenosine transferase [Methylovorus sp. MP688] Length = 254 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 91/261 (34%), Positives = 133/261 (50%), Gaps = 11/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + KK GQNFL D I+ + + ++EIG G G LTQ LL + V+E Sbjct: 2 KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLEN-LHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ ++ + P ++ I DALK D F +I+ +R++ NLPYNI T +LF+ Sbjct: 61 IDRDIIAWMEKHYA--PGKVTIHNIDALKFD---FASIAPRLRVVGNLPYNISTPILFHL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV ER+ A+ +S YGRLSV+ + +F + P F P Sbjct: 116 LDNVAH---IIDMHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAFDP 172 Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S + +PH P P ++ AFG+RRKTLR +LK L + GI Sbjct: 173 APKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEALGI 232 Query: 256 ETNLRAENLSIEDFCRITNIL 276 ++ RAENL + F I N L Sbjct: 233 DSQWRAENLPLSSFVSIANYL 253 >gi|224283936|ref|ZP_03647258.1| dimethyladenosine transferase [Bifidobacterium bifidum NCIMB 41171] gi|310288290|ref|YP_003939549.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17] gi|309252227|gb|ADO53975.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17] Length = 316 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 14/282 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 31 DIRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILET 90 Query: 69 GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRII 122 GA + +E D L + NRL +I DAL + F+ P ++ Sbjct: 91 GA-TMTAVEIDPPVAQRLPHTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTLV 149 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ T ++ + S ++ QKEV +R+TA S YG SV W Sbjct: 150 ANLPYNVATPIILTLLER---FDMLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWYG 206 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESL-KKITQEAFGKRRKTLR 238 A + +I HVF+P+P V S + F H P L L ++ AF +RRKTL Sbjct: 207 SAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTLH 266 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LKR+ + + H AGI+ R E L+I++F + L +Q Sbjct: 267 AALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 308 >gi|282848961|ref|ZP_06258350.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745] gi|282581236|gb|EFB86630.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745] Length = 284 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I + I K +GQNFL+ I+ +I ++ G V+E+G G G LTQ L GA Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTAGEPVLEVGPGIGTLTQGLAQSGAD- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ +L + + N + II D LK+D N P +++ANLPY I T Sbjct: 74 VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ + + + E L ++ QKEV R+ A+ + YG LSV + T+ ++ D+ P Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245 F P+P VTS+VI + P + ++ + F +RRKT ++K G Sbjct: 189 KSFLPAPAVTSSVIRCVLRNKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E LL +A I+ R E ++++F + N Sbjct: 249 IEELLAKANIDGLRRGETFTLQEFADVANAWA 280 >gi|227547072|ref|ZP_03977121.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212489|gb|EEI80378.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 321 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 28 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 88 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 203 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 204 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 263 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 264 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316 >gi|313141088|ref|ZP_07803281.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313133598|gb|EFR51215.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium bifidum NCIMB 41171] Length = 313 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 14/282 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 28 DIRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILET 87 Query: 69 GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRII 122 GA + +E D L + NRL +I DAL + F+ P ++ Sbjct: 88 GA-TMTAVEIDPPVAQRLPHTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTLV 146 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ T ++ + S ++ QKEV +R+TA S YG SV W Sbjct: 147 ANLPYNVATPIILTLLER---FDMLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWYG 203 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESL-KKITQEAFGKRRKTLR 238 A + +I HVF+P+P V S + F H P L L ++ AF +RRKTL Sbjct: 204 SAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTLH 263 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LKR+ + + H AGI+ R E L+I++F + L +Q Sbjct: 264 AALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305 >gi|154707299|ref|YP_001425385.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111] gi|226729774|sp|A9KGZ8|RSMA_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|154356585|gb|ABS78047.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111] Length = 258 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 99/261 (37%), Positives = 141/261 (54%), Gaps = 8/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E Sbjct: 3 KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ Sbjct: 62 IDGDLVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 S E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTP 176 Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236 Query: 256 ETNLRAENLSIEDFCRITNIL 276 LR + L++EDF +I+NIL Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257 >gi|119026633|ref|YP_910478.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC 15703] gi|166221647|sp|A1A3W3|RSMA_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118766217|dbj|BAF40396.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC 15703] Length = 303 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 29/303 (9%) Query: 1 MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51 MT N H+ ++ I + I P K GQNF++D +++I +G V Sbjct: 1 MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 60 Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKV 107 +E+G G G+LT +L GA + +E D L ++ +R ++ DAL V Sbjct: 61 LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 119 Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 + E F ++ANLPYN+ T +L + + + QKEV +R++ + Sbjct: 120 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEK 176 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH----------LNPI 215 S YG SV W A + I +VF+P+P V S ++ F + + Sbjct: 177 PGSKIYGTPSVKLAWYGTAERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADGS 236 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 E++ ++ AFG+RRKTL +LK++ +AGI+ R E L+I++F + Sbjct: 237 VVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALARA 296 Query: 276 LTD 278 L + Sbjct: 297 LDE 299 >gi|329118095|ref|ZP_08246807.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465755|gb|EGF12028.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 134/268 (50%), Gaps = 13/268 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + + + +K GQNFL D I+ I + TVIEIG G +T L Sbjct: 8 RATMKEH--QARKRFGQNFLQDTRIIADIVNAVRPQPDDTVIEIGPGLAAITAPLAA-KL 64 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++ V+E D+ LK++ ++L I + D L+ D F +I+ +I+ NLPYNI Sbjct: 65 NRLHVVEIDRDIVARLKNL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNIS 119 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T LLF + + QKEV ER+TA S YGRLSV+ + + + ++ Sbjct: 120 TPLLFRL---SEIADDVADMHFMLQKEVVERMTAAPGSNDYGRLSVMLQYFFEMEPLINV 176 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P+PKV S V+ IP + I ++ ++ + AF +RRKT+R +LK L + Sbjct: 177 PPEAFSPAPKVDSAVVRMIPLKHRIGRADDFDAFARLVKAAFHQRRKTIRNNLKELAADG 236 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 L AGI R E+++ E + ++N L Sbjct: 237 DLQAAGINPQDRPEHIAPEKYVGLSNYL 264 >gi|282907815|ref|ZP_06315653.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910131|ref|ZP_06317937.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282325979|gb|EFB56285.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328291|gb|EFB58566.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus WW2703/97] Length = 299 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 146/294 (49%), Gaps = 25/294 (8%) Query: 1 MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 M M + + +L Y KK +GQNFL+D+NI+ I ++S VIEIG Sbjct: 1 MKMLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EK 111 G G+LT+ L A++V+ E DQ+ P+L D S + N + +I +D LK + E Sbjct: 61 PGMGSLTEQLA-RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVEN 118 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I ++ANLPY I T +L N + D + ++ QKEVGER+ A+ S Y Sbjct: 119 HLQDCEKIMVVANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEIGSKAY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229 G LS++ + T+ + + + VF P P V S V+ + P+ E+ K+ + A Sbjct: 176 GSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAA 235 Query: 230 FGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 F +RRKT+ + + + L QAGI+ R E LSI+DF ++ Sbjct: 236 FAQRRKTINNNYQNYFKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKLYE 289 >gi|213693330|ref|YP_002323916.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|239622870|ref|ZP_04665901.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|317482342|ref|ZP_07941362.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA] gi|322690152|ref|YP_004209886.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis 157F] gi|254807861|sp|B7GPE3|RSMA_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|213524791|gb|ACJ53538.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|239514867|gb|EEQ54734.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|316916222|gb|EFV37624.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA] gi|320459512|dbj|BAJ70133.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461488|dbj|BAJ72108.1| dimethyladenosine transferase [Bifidobacterium longum subsp. infantis 157F] Length = 307 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 249 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302 >gi|253581082|ref|ZP_04858342.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847618|gb|EES75588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 290 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 19/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + + +++ +L Y +K GQNFL+D ++L KI +S+ V+EIG G G +T Sbjct: 6 LGDPKYTI-EVLQKYNFAFQKRFGQNFLIDTHVLDKIIDSAQITKDDFVLEIGPGIGTMT 64 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119 Q L V D+ PIL D N + +I +D LKVD + N PI Sbjct: 65 QYLAEAAREVAAVE-IDKTLLPILDDTLKDWDN-VTVINNDILKVDIRQLALEKNQGRPI 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ +S+T++ QKEV +R+ + YG LS+ Sbjct: 123 KVVANLPYYITTPIIMGLFENQVP---VDSITIMVQKEVADRMQVGPGTKDYGALSLAVQ 179 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237 + K ++ ++ P+ F P PKV S VI + P + + +I + +F +RRKTL Sbjct: 180 YYAKPKIVANVPPNCFMPRPKVGSAVIRLERYEKPPVEVKNEKLMFRIIRASFNQRRKTL 239 Query: 238 RQSLKRL----GGENLLHQA----GIETNLRAENLSIEDFCRITNILTD 278 LK + + QA G+ ++R E L++ F ++ N T+ Sbjct: 240 VNGLKNSQEIPFSKEQIEQALGMCGLSLSVRGEALTLAQFAQLANAFTE 288 >gi|311065151|ref|YP_003971877.1| dimethyladenosine transferase [Bifidobacterium bifidum PRL2010] gi|310867471|gb|ADP36840.1| Dimethyladenosine transferase [Bifidobacterium bifidum PRL2010] Length = 313 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 14/282 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I + I P K GQNF++D +++I + V+E+G G G+LT +L Sbjct: 28 DIRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILET 87 Query: 69 GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRII 122 GA + +E D L + NRL +I DAL + F+ P ++ Sbjct: 88 GA-TMTAVEIDPPVAQRLPHTIDTYMPDARNRLTVINKDALALTSADLPEFSDDEPFTLV 146 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ T ++ + S ++ QKEV +R+TA S YG SV W Sbjct: 147 ANLPYNVATPIILTLLER---FDMLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWYG 203 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESL-KKITQEAFGKRRKTLR 238 A + +I HVF+P+P V S + F H P L L ++ AF +RRKTL Sbjct: 204 SAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTLH 263 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LKR+ + + H AGI+ R E L+I++F + L +Q Sbjct: 264 AALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305 >gi|253998288|ref|YP_003050351.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4] gi|253984967|gb|ACT49824.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4] Length = 254 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 92/261 (35%), Positives = 134/261 (51%), Gaps = 11/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + KK GQNFL D I+ + + ++EIG G G LTQ LL + V+E Sbjct: 2 KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLEN-LHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ ++ + P ++ I DALK D F +I+S +R++ NLPYNI T +LF+ Sbjct: 61 IDRDIIAWMEKHYA--PGKVTIHNIDALKFD---FASIASRLRVVGNLPYNISTPILFHL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV ER+ A+ +S YGRLSV+ + +F + P F P Sbjct: 116 LDNVDH---IIDMHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAFDP 172 Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S + +PH P P ++ AFG+RRKTLR +LK L + GI Sbjct: 173 APKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEALGI 232 Query: 256 ETNLRAENLSIEDFCRITNIL 276 ++ RAENL + F I N L Sbjct: 233 DSQWRAENLPLSAFVSIANYL 253 >gi|227522373|ref|ZP_03952422.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290] gi|227090431|gb|EEI25743.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290] Length = 301 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 20/288 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + IL+ Y++ KK +GQNFL+DLNIL I E++ VIEIG G G LT+ L Sbjct: 14 SPARTQAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQL 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121 A +V+ E D++ P+L + S + N +EII D LK + + F P+++ Sbjct: 74 AK-AANQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKV 131 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + ++ P +ES+ ++ QKEV ER+ A+ + YG LSV+ + Sbjct: 132 VANLPYYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQ 188 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + F + F P PKV S ++ P ++ P + + F +RKTL Sbjct: 189 NDVDISFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWN 248 Query: 240 SLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L + G+ +L I R E L +E F +TN + Sbjct: 249 NLLGVFGKQESVKGQIKKVLDDLSINAANRPEQLLVEQFVALTNAFHE 296 >gi|225352355|ref|ZP_03743378.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156862|gb|EEG70231.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 309 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 20/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 22 AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GA + +E D L + +R ++ DAL V E F Sbjct: 82 ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFQNDDSFT 140 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R++ + S YG SV W Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEKPGSKIYGTPSVKLAW 197 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--------NPI--PCCLESLKKITQEAF 230 A + I +VF+P+P V S ++ F + NP E++ ++ AF Sbjct: 198 YGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTPSANNPDGSVVDRENVFRLIDAAF 257 Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+RRKTL +LK++ QAGI+ R E L+I++F + + + Sbjct: 258 GQRRKTLHAALKKIVPSEAFEQAGIDPTRRGETLAIDEFVALARAVGE 305 >gi|154486326|ref|ZP_02027733.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis L2-32] gi|154084189|gb|EDN83234.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 138/303 (45%), Gaps = 29/303 (9%) Query: 1 MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51 MT N H+ ++ I + I P K GQNF++D +++I +G V Sbjct: 6 MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 65 Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKV 107 +E+G G G+LT +L GA + +E D L ++ +R ++ DAL V Sbjct: 66 LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 124 Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 + E F ++ANLPYN+ T +L + + + QKEV +R++ + Sbjct: 125 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEK 181 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH----------LNPI 215 S YG SV W + I +VF+P+P V S ++ F + + Sbjct: 182 PGSKIYGTPSVKLAWYGTTERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADGS 241 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 E++ ++ AFG+RRKTL +LK++ +AGI+ R E L+I++F + Sbjct: 242 VVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALARA 301 Query: 276 LTD 278 L + Sbjct: 302 LDE 304 >gi|322692102|ref|YP_004221672.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456958|dbj|BAJ67580.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 307 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/290 (27%), Positives = 132/290 (45%), Gaps = 22/290 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 249 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 AFG+RRKTL +LK + AGI+ R E L+I +F + + Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIES 299 >gi|302388630|ref|YP_003824451.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM 16646] gi|302199258|gb|ADL06828.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM 16646] Length = 282 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 15/278 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + I+ + I P K +GQ+FL+D L K+ E++ + V+EIG G G LT L A Sbjct: 4 RAIMREFGIRPSKRLGQHFLIDEAPLYKMLEAARLNESDEVLEIGPGLGVLTLELCRR-A 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYN 128 +KV+ +EKD P+L+ ++ + N + ++++D LK+D EK + +++ANLPY Sbjct: 63 KKVVAVEKDPNLIPVLEKLTKSY-NNICLLREDVLKLDMEKLWREYFDGKFKVVANLPYY 121 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + ++ I+ E ++ QKEV R+ A + YG LSV ++ Sbjct: 122 ITSPVIMKIINNR---HLIEMAVIMIQKEVAHRLVAAPGNKDYGILSVAVQLYADVDLVC 178 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + F P PKV S V+ + K+ + AFG+RRKT++ SL+ Sbjct: 179 HVGRSAFLPPPKVDSAVVRLVLKEGSAVPLEDERLFFKVVEAAFGERRKTVKNSLRSRLS 238 Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E L +AGI+ + RAE L+IE+F + + D Sbjct: 239 LFAGDVEEALERAGIDGSRRAETLTIEEFAALAREIKD 276 >gi|15926170|ref|NP_373703.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus N315] gi|21282177|ref|NP_645265.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MW2] gi|49485357|ref|YP_042578.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MSSA476] gi|57634617|ref|NP_371017.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu50] gi|57651375|ref|YP_185424.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus COL] gi|87160474|ref|YP_493179.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194251|ref|YP_499043.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266951|ref|YP_001245894.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH9] gi|150392997|ref|YP_001315672.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH1] gi|156978821|ref|YP_001441080.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu3] gi|161508739|ref|YP_001574398.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142315|ref|ZP_03566808.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316230|ref|ZP_04839443.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005286|ref|ZP_05143887.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258429609|ref|ZP_05688283.1| ksgA protein [Staphylococcus aureus A9299] gi|258446120|ref|ZP_05694281.1| dimethyladenosine transferase [Staphylococcus aureus A6300] gi|258448028|ref|ZP_05696158.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224] gi|258453825|ref|ZP_05701798.1| dimethyladenosine transferase [Staphylococcus aureus A5937] gi|262049978|ref|ZP_06022837.1| dimethyladenosine transferase [Staphylococcus aureus D30] gi|262052522|ref|ZP_06024719.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3] gi|269202113|ref|YP_003281382.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ED98] gi|282895100|ref|ZP_06303320.1| dimethyladenosine transferase [Staphylococcus aureus A8117] gi|282915811|ref|ZP_06323579.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus D139] gi|282925567|ref|ZP_06333220.1| dimethyladenosine transferase [Staphylococcus aureus A9765] gi|283768928|ref|ZP_06341837.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus H19] gi|284023502|ref|ZP_06377900.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 132] gi|294850352|ref|ZP_06791085.1| dimethyladenosine transferase [Staphylococcus aureus A9754] gi|295407382|ref|ZP_06817179.1| dimethyladenosine transferase [Staphylococcus aureus A8819] gi|296276552|ref|ZP_06859059.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MR1] gi|297246462|ref|ZP_06930302.1| dimethyladenosine transferase [Staphylococcus aureus A8796] gi|47606760|sp|Q932G1|RSMA_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54037709|sp|P66663|RSMA_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54041550|sp|P66662|RSMA_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900458|sp|Q5HII3|RSMA_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900527|sp|Q6GBZ5|RSMA_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365846|sp|Q2FJE9|RSMA_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365847|sp|Q2G0T0|RSMA_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221707|sp|A7WYP0|RSMA_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028820|sp|A6TYW7|RSMA_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028821|sp|A5IQ45|RSMA_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028822|sp|A8Z0Y8|RSMA_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13700383|dbj|BAB41681.1| ksgA [Staphylococcus aureus subsp. aureus N315] gi|21203613|dbj|BAB94313.1| ksgA [Staphylococcus aureus subsp. aureus MW2] gi|46395517|dbj|BAB56655.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu50] gi|49243800|emb|CAG42225.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus MSSA476] gi|57285561|gb|AAW37655.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus COL] gi|87126448|gb|ABD20962.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201809|gb|ABD29619.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740020|gb|ABQ48318.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH9] gi|149945449|gb|ABR51385.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JH1] gi|156720956|dbj|BAF77373.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Mu3] gi|160367548|gb|ABX28519.1| possible dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257849668|gb|EEV73635.1| ksgA protein [Staphylococcus aureus A9299] gi|257855097|gb|EEV78039.1| dimethyladenosine transferase [Staphylococcus aureus A6300] gi|257858718|gb|EEV81591.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224] gi|257863996|gb|EEV86751.1| dimethyladenosine transferase [Staphylococcus aureus A5937] gi|259159569|gb|EEW44616.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3] gi|259161913|gb|EEW46496.1| dimethyladenosine transferase [Staphylococcus aureus D30] gi|262074403|gb|ACY10376.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ED98] gi|269940064|emb|CBI48440.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus TW20] gi|282320302|gb|EFB50644.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus D139] gi|282592471|gb|EFB97483.1| dimethyladenosine transferase [Staphylococcus aureus A9765] gi|282762518|gb|EFC02658.1| dimethyladenosine transferase [Staphylococcus aureus A8117] gi|283461109|gb|EFC08195.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus H19] gi|283469785|emb|CAQ48996.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ST398] gi|285816192|gb|ADC36679.1| Dimethyladenosine transferase [Staphylococcus aureus 04-02981] gi|294822776|gb|EFG39212.1| dimethyladenosine transferase [Staphylococcus aureus A9754] gi|294967739|gb|EFG43771.1| dimethyladenosine transferase [Staphylococcus aureus A8819] gi|297176649|gb|EFH35911.1| dimethyladenosine transferase [Staphylococcus aureus A8796] gi|312828988|emb|CBX33830.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128619|gb|EFT84622.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196174|gb|EFU26530.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus CGS01] gi|329313211|gb|AEB87624.1| Ribosomal RNA small subunit methyltransferase A [Staphylococcus aureus subsp. aureus T0131] gi|329725046|gb|EGG61541.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 21172] gi|329729797|gb|EGG66194.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 21189] gi|329731076|gb|EGG67448.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 21193] Length = 297 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 10 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 70 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287 >gi|253730960|ref|ZP_04865125.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735227|ref|ZP_04869392.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH130] gi|297207404|ref|ZP_06923843.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910363|ref|ZP_07127816.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH70] gi|304380509|ref|ZP_07363186.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253725310|gb|EES94039.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726787|gb|EES95516.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH130] gi|296887967|gb|EFH26861.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888352|gb|EFK83539.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH70] gi|302750383|gb|ADL64560.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340954|gb|EFM06877.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320139421|gb|EFW31299.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144198|gb|EFW35966.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MRSA177] Length = 303 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 16 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 76 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 251 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 293 >gi|118600900|sp|Q2YVV2|RSMA_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 297 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 10 PSRMRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 70 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287 >gi|82750200|ref|YP_415941.1| dimethyladenosine transferase [Staphylococcus aureus RF122] gi|82655731|emb|CAI80130.1| dimethyladenosine transferase [Staphylococcus aureus RF122] Length = 303 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 16 PSRMRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 76 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 251 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 293 >gi|168333630|ref|ZP_02691890.1| dimethyladenosine transferase [Epulopiscium sp. 'N.t. morphotype B'] Length = 283 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 149/288 (51%), Gaps = 13/288 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K +LS Y I KK GQNFL+D ++L KI ++ V+EIG G G+ Sbjct: 1 MNKIATPGGTKAVLSKYPFILKKKYGQNFLIDEHVLTKIISAANISKNDCVLEIGPGIGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 +TQ LL A++VI +E D++ PIL + + N +I +D LK+D ++ + I+ Sbjct: 61 VTQELLEH-AQEVIAVEIDKELIPILNNQFGSYDN-FALINEDFLKLDLKEVLKGXTNIK 118 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY I T ++ + ++ + ++T++ QKEV +RITA + YG +S + Sbjct: 119 VVANLPYYITTPIIMALLESELP---FINITVMVQKEVADRITALPGTKEYGSISASIAY 175 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR 238 K ++ ++ H F P P V S VI + NP E K+ + AF +RRKT+ Sbjct: 176 YAKVRLVANVPMHSFLPRPTVNSAVIELELYRNPPVDLKNKEVFFKVIRAAFSQRRKTIL 235 Query: 239 QSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L +NLL A I N+R E L +F ++N++ Q Sbjct: 236 NTLSNNFNIDKKQLKNLLEVADIAENVRGETLGTSEFAILSNLICSTQ 283 >gi|151220668|ref|YP_001331490.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. Newman] gi|172048766|sp|A6QEE6|RSMA_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|150373468|dbj|BAF66728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus str. Newman] Length = 297 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 10 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGIGSLTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 70 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287 >gi|298693823|gb|ADI97045.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus ED133] Length = 297 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 10 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 70 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKKAVENHLQDCEKIMVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287 >gi|220933005|ref|YP_002509913.1| dimethyladenosine transferase [Halothermothrix orenii H 168] gi|254807869|sp|B8D0I2|RSMA_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|219994315|gb|ACL70918.1| dimethyladenosine transferase [Halothermothrix orenii H 168] Length = 301 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 146/279 (52%), Gaps = 19/279 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I+ Y + K +GQNFL+D NI+ KI ++ + VIEIG G G+LTQ ++ R Sbjct: 13 EIIRKYNLKLHKGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGR 72 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPY 127 V EKD++ +L+++ + + N LE+I D L+VD++ FF+ ++++ANLPY Sbjct: 73 -VFAFEKDKRLVKVLRELFNGY-NHLEVIGQDVLEVDWKHFFDSRGISDRSVKVLANLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ + ++ + + L+ QKEV +R+ A S YG LSV + + + Sbjct: 131 YITTPVIMGLLESNI---TFSLMVLMVQKEVADRMAAAPGSKDYGALSVAVQYYGEVEIF 187 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + P VF P P+V S++I PH P+ K+ + F +RRKTL+ SL + Sbjct: 188 HKVPPTVFIPRPRVYSSIIKIKPHSEPVYRVKNEGFFFKMVRAIFQQRRKTLKNSLTKSS 247 Query: 246 --------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + G++ +R E L+I+ ++N L Sbjct: 248 EIKLDKGIVTEAIRELGLDPRIRGEKLTIKQMAILSNTL 286 >gi|71276283|ref|ZP_00652561.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon] gi|71898488|ref|ZP_00680660.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] gi|71162891|gb|EAO12615.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon] gi|71731801|gb|EAO33860.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] Length = 297 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+FL+D + +I + ++EIG G G +T LL + IE D+ Sbjct: 42 AKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 100 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138 L ++ P +L+II D L VD +R++ NLPYNI + +LF+ + Sbjct: 101 DLIAPL--TAAATPIGKLDIIHRDVLTVDLSILAKQGNKKLRMVGNLPYNISSPILFHVL 158 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRLSV+ + T MF + P F P Sbjct: 159 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 215 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S + +P + I + AFG+RRKTLR SL + AGI Sbjct: 216 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 275 Query: 257 TNLRAENLSIEDFCRITNI 275 TN RAE L + +F + N Sbjct: 276 TNARAEQLEVTEFIALANA 294 >gi|229825723|ref|ZP_04451792.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC 49176] gi|229790286|gb|EEP26400.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC 49176] Length = 300 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 147/299 (49%), Gaps = 24/299 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + IL Y +K GQNFL+D ++L+KI +++ V+EIG G G Sbjct: 1 MADLGQPQNTIAILKKYDFTFQKKFGQNFLIDTHVLEKIVDAADIGKDDLVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 +TQ L AR+VI +E D++ ILKD S + N +E+I +D LKVD N Sbjct: 61 VTQYLCE-AARQVIAVEIDRKLIKILKDTLSAYDN-VEVINEDILKVDIAALVEEKNEGK 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI++++NLPY I T ++ + +TL+ Q+EV R+ A + YG LS+ Sbjct: 119 PIKVVSNLPYYITTPIIMTLLEKRVP---VTDMTLMMQEEVARRMQAAPGNKDYGALSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + + + + + F P P V S V++ H P E + K+ + +F +RRK Sbjct: 176 VQYYSVPYIAAFVPQNCFMPRPNVGSAVVNLKCHEKPPVEVMDEELMFKLIKASFAQRRK 235 Query: 236 TLRQSL---------KRLGGENLLHQAGI-----ETNLRAENLSIEDFCRITNILTDNQ 280 TL+ L K E +L + +R E L++++F +++I ++N+ Sbjct: 236 TLQNGLTNSAELDFTKEEITEAILKMQELLGMKQNPLIRGETLTLKEFACLSDIFSNNK 294 >gi|58583371|ref|YP_202387.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625195|ref|YP_452567.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575373|ref|YP_001912302.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|62900457|sp|Q5GWB9|RSMA_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365863|sp|Q2NZI4|RSMA_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732641|sp|B2SPT3|RSMA_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58427965|gb|AAW77002.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369135|dbj|BAE70293.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519825|gb|ACD57770.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 262 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + ++ L II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ T +F + P F P PK Sbjct: 126 AA---VVADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + A + + Sbjct: 183 VDSAVVRLVPRDPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAQVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|188591258|ref|YP_001795858.1| dimethyladenosine transferase [Cupriavidus taiwanensis LMG 19424] gi|226729776|sp|B2AH89|RSMA_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170938152|emb|CAP63138.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase (kasugamycin resistance) [Cupriavidus taiwanensis LMG 19424] Length = 277 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 85/273 (31%), Positives = 127/273 (46%), Gaps = 16/273 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL+D I+ I + G ++EIG G G LT LL ++ V Sbjct: 6 HQGHVARKRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERIP-QMQV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ + RL++ DAL DF+K P+RI+ NLPYNI + LLF Sbjct: 65 VELDRDLVERLRRR---YGERLQVHAGDALDFDFDKLAVPGRPLRIVGNLPYNISSPLLF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV ER+ A+ S +GRLS++ R + D+ P F Sbjct: 122 HLME---FADHVHDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGAF 178 Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 P PKV S V+ IP C + L + AF +RRK LR +L L Sbjct: 179 NPPPKVDSAVVRMIPWPRHGDGRLRSPHADCDITVLGDVVTAAFSQRRKVLRNTLSFLRD 238 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + G + RAE + + ++ + L D Sbjct: 239 QVDFDAMGFDLGRRAEEVPVGEYVELARRLGDK 271 >gi|170730479|ref|YP_001775912.1| dimethyladenosine transferase [Xylella fastidiosa M12] gi|182681823|ref|YP_001829983.1| dimethyladenosine transferase [Xylella fastidiosa M23] gi|167965272|gb|ACA12282.1| rRNA (adenine-N(6)-)-methyltransferase [Xylella fastidiosa M12] gi|182631933|gb|ACB92709.1| dimethyladenosine transferase [Xylella fastidiosa M23] gi|307578073|gb|ADN62042.1| dimethyladenosine transferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 297 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+FL+D + +I + ++EIG G G +T LL + IE D+ Sbjct: 42 AKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 100 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138 L ++ P +L+II D L VD +R++ NLPYNI + +LF+ + Sbjct: 101 DLIAPL--TAAATPIGKLDIIHRDVLTVDLSILAKQGNKKLRLVGNLPYNISSPILFHVL 158 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRLSV+ + T MF + P F P Sbjct: 159 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 215 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S + +P + I + AFG+RRKTLR SL + AGI Sbjct: 216 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 275 Query: 257 TNLRAENLSIEDFCRITNI 275 TN RAE L + +F + N Sbjct: 276 TNARAEQLEVTEFIALANA 294 >gi|258513475|ref|YP_003189697.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM 771] gi|257777180|gb|ACV61074.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM 771] Length = 305 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 19/292 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + + + + K +GQNFL+D NI+ KI ++ V+EIG G G Sbjct: 1 MSELSSPSKVFNLFKEFNFHTNKKLGQNFLIDSNIISKIISAADLRSEDLVVEIGPGLGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NI 115 LTQ + +R V+ IE D++ PIL+ ++ N ++I DALK DF++ Sbjct: 61 LTQSIADEVSR-VLSIEIDRKLQPILEVNLKEYSNT-KVIFQDALKTDFDRLVYAEAGGK 118 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 S ++IANLPY I T LL + + + E + ++ Q+EV ER+TA YG LS Sbjct: 119 SRSYKVIANLPYYITTPLLMHILESKFN---VELIVIMVQREVAERMTAPPGKKDYGALS 175 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKR 233 V + T+ ++ + VF P+P+V STVI I P + + + AF +R Sbjct: 176 VAVQYYTEPEIICRVPKTVFIPAPEVDSTVIRLIKRKLPPVQLKSEKLFFNLVRTAFNQR 235 Query: 234 RKTLRQSLK----RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278 RKT+ +++ L E L +AGI+ R E S++DF ++N + + Sbjct: 236 RKTVLNAMQGSNWGLMKEEWKIILEKAGIDPMRRGETFSLQDFAMLSNCVYE 287 >gi|78222518|ref|YP_384265.1| dimethyladenosine transferase [Geobacter metallireducens GS-15] gi|118600869|sp|Q39W34|RSMA_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78193773|gb|ABB31540.1| dimethyladenosine transferase [Geobacter metallireducens GS-15] Length = 275 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 134/270 (49%), Gaps = 16/270 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I +K +GQNFL+D ++L +IA+ ++E+G G G LT+ML AR ++ +E Sbjct: 5 GIRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCAR-LVAVE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLF 135 D + P+L+ +P R+EI+ D L++D + ++ ANLPYNI T +LF Sbjct: 64 LDTRLVPVLRQAFRDNP-RVEIVHGDILEIDLRDLLAYEGGERWKVAANLPYNISTPVLF 122 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ + L L+ QKEVG+R+ A + YG LSV T + P F Sbjct: 123 AFLDNRD---LFSRLVLMLQKEVGDRLAASPGTKDYGILSVFFQLHFDVTREMIVRPGSF 179 Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-------G 246 P PKV S V+ F+P P + +++ + AF RRKTL LK G Sbjct: 180 HPVPKVDSAVLSFVPLEKPRVAVGDEQYFRRLVKGAFSMRRKTLWNCLKNAGLGLSGEQL 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L GIE R E LS+++F ++ + Sbjct: 240 SEALAVCGIEPGRRGETLSLDEFAALSRAM 269 >gi|289663557|ref|ZP_06485138.1| dimethyladenosine transferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 262 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + ++ L II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + A + + Sbjct: 183 VDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAQVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|317120934|ref|YP_004100937.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM 12885] gi|315590914|gb|ADU50210.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM 12885] Length = 310 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 22/291 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + L+ L Y + P + +GQNFL+D + ++I + V+E+G G G LT+ L Sbjct: 14 RRAELRRWLEQYGVRPSRRLGQNFLVDDHWAERIVGAVEPGPDDVVLEVGPGLGALTERL 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 + A +V+ +E D++ L+ + N +++ D L+VD + Sbjct: 74 VRR-AGRVVAVEVDRRLAEALRQRLACVDN-FQLVVADVLQVDLADLVARHLAPVGGDDM 131 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ +NLPY I + L W+ + WE L Q EV +R+ A + YG L+V Sbjct: 132 PAVKLASNLPYAITSPFLVRWLGSSV---RWERAVLTLQAEVVDRLVAAPGTAAYGALTV 188 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234 + + + + F+P P+V S V+ PH P ++L + + AF +RR Sbjct: 189 FVAYHARVERLGIVPAGAFWPRPEVDSAVVRLWPHPQPPVAVADPDALFALVRAAFSQRR 248 Query: 235 KTLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K L +L R E AG++ R E + +E F R+ N L + Sbjct: 249 KRLANALAAHPAVDRRQAEAACRAAGLDPGARPEEVDLEGFARLANQLFSS 299 >gi|73540206|ref|YP_294726.1| dimethyladenosine transferase [Ralstonia eutropha JMP134] gi|119365051|sp|Q475Q1|RSMA_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72117619|gb|AAZ59882.1| dimethyladenosine transferase [Ralstonia eutropha JMP134] Length = 278 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 16/270 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL+D +I+ I + L ++EIG G G LT LL ++ V Sbjct: 6 HQGHVARKRFGQNFLVDDSIIHGIVNAINPLADDVLVEIGPGLGALTDPLLERVP-QMQV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ + +RL++ DAL DF + P+RI+ NLPYNI + LLF Sbjct: 65 VELDRDLVERLRRR---YGDRLQVHAGDALAFDFGRLAVPGRPLRIVGNLPYNISSPLLF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + QKEV +R+ A+ S +GRLS++ R + D+ P F Sbjct: 122 HLMDYADH---VHDQHFMLQKEVVDRMVAEPGSKAFGRLSIMLQVRYHMEHVLDVPPGSF 178 Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 P PKV S V+ IP C + L + AF +RRK LR +L L Sbjct: 179 NPPPKVDSAVVRMIPWPRTESGRLRSPHADCDITVLGDLVTAAFSQRRKVLRNTLSFLRD 238 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + G + RAE + + ++ + L Sbjct: 239 QIDFEAIGFDLGRRAEEVPVGEYVELARRL 268 >gi|49482720|ref|YP_039944.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257424604|ref|ZP_05601032.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427270|ref|ZP_05603671.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429907|ref|ZP_05606293.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 68-397] gi|257432610|ref|ZP_05608972.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus E1410] gi|257435514|ref|ZP_05611564.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M876] gi|282903078|ref|ZP_06310970.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C160] gi|282904868|ref|ZP_06312728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282913320|ref|ZP_06321111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M899] gi|282918274|ref|ZP_06326014.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C427] gi|282923025|ref|ZP_06330711.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C101] gi|283957282|ref|ZP_06374740.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500369|ref|ZP_06666221.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 58-424] gi|293509307|ref|ZP_06668023.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M809] gi|293515896|ref|ZP_06670586.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M1015] gi|295427027|ref|ZP_06819664.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|62900528|sp|Q6GJH8|RSMA_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49240849|emb|CAG39516.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272631|gb|EEV04751.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275921|gb|EEV07389.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279423|gb|EEV10018.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus 68-397] gi|257282475|gb|EEV12608.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp. aureus E1410] gi|257285151|gb|EEV15268.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M876] gi|282314544|gb|EFB44931.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C101] gi|282317840|gb|EFB48209.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C427] gi|282322791|gb|EFB53111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M899] gi|282331985|gb|EFB61494.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596504|gb|EFC01464.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus C160] gi|283791206|gb|EFC30016.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus A017934/97] gi|290921304|gb|EFD98362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M1015] gi|291096329|gb|EFE26589.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus 58-424] gi|291467852|gb|EFF10362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus M809] gi|295129030|gb|EFG58659.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193854|gb|EFU24248.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus CGS00] Length = 297 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 10 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 70 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 245 YQNYFKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKLYE 287 >gi|297591597|ref|ZP_06950234.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MN8] gi|297575466|gb|EFH94183.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus MN8] gi|312436418|gb|ADQ75489.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus TCH60] Length = 303 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 16 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 76 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYT 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 251 YQNYFKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKLYE 293 >gi|261855877|ref|YP_003263160.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2] gi|261836346|gb|ACX96113.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2] Length = 285 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 15/272 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ +I + ++EIG G G LT L+ + V+E Sbjct: 10 GHRARKRFGQNFLTDEAVIARIVSAIAPKADDRLVEIGPGLGALTCQLI-QPLTHLTVVE 68 Query: 78 KDQQFFPILKDISSQ--------HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 D+ P L S+ ++L +++ DAL ++ E P+RI NLPYNI Sbjct: 69 LDRDIIPKLLARCSKQKTAHDQSSQSKLTVLEQDALTLNLEPLA-CEGPLRIAGNLPYNI 127 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ + +T + QKEV +R+ A + YGRLS++ + +F Sbjct: 128 ATPLIFHLLEQSKH---IIDMTFMLQKEVVDRLAAHPGNRDYGRLSLMVQAVAEVESLFV 184 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ +P +P+ P L++L + AF RRKTL+ +LK Sbjct: 185 VPPTAFNPPPKVDSAIVRLVPRTHPLVPDDLKALFGELVSLAFAHRRKTLQNNLKHRLPT 244 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + AGI+ RAE +S+++F + ++ + Sbjct: 245 STIVLAGIDPGTRAEQVSLDEFITLARLVKEQ 276 >gi|71901524|ref|ZP_00683609.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] gi|71728711|gb|EAO30857.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1] Length = 297 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+FL+D + +I ++EIG G G +T LL + IE D+ Sbjct: 42 AKKAFGQHFLVDRYYIDRIIHVINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 100 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138 L ++ P +L+II D LKVD +R++ NLPYNI + +LF+ + Sbjct: 101 DLIAPL--TAAATPIGKLDIIHSDVLKVDLSILAKQGNKKLRLVGNLPYNISSPILFHVL 158 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRLSV+ + T MF + P F P Sbjct: 159 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 215 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S + +P + I + AFG+RRKTLR SL + AGI Sbjct: 216 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 275 Query: 257 TNLRAENLSIEDFCRITNI 275 TN RAE L + +F + N Sbjct: 276 TNARAEQLEVTEFIALANA 294 >gi|332971060|gb|EGK10030.1| dimethyladenosine transferase [Desmospora sp. 8437] Length = 294 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 146/292 (50%), Gaps = 19/292 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + +L+ + KK +GQ+FL D IL K+ E++G V+EIG G G Sbjct: 4 MDEVRIAERTRQLLAERGLRLKKSLGQHFLTDRRILDKMMEAAGLGPEAGVLEIGPGIGA 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116 LT+ L + A +V+ +E D++ P+L + S P+ + I+Q D + +D + Sbjct: 64 LTERLA-VEAGQVVAVELDERLIPVLSSLFSDQPH-VRIVQGDVMSLDLSRLLQDHLGDC 121 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 S I ++ANLPY + T +L + + + ++ QKEV ER+TA S YG ++V Sbjct: 122 SRISVVANLPYYVTTPILMRLLEEKLP---LDRIVIMIQKEVAERLTASPGSKAYGSITV 178 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234 T + + + + HVF P P+V S VI P + L ++ + AFG+RR Sbjct: 179 ATRYYAETEWVTKVPAHVFVPRPQVDSAVIRLKIRQRPPVEVRDEALLFRVIRAAFGQRR 238 Query: 235 KTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 KTL +L + +L + GI+ R E LS+E+F ++N L + Sbjct: 239 KTLLNALSTGAVDGEGKETISRVLSETGIDPKRRGETLSLEEFALLSNRLHE 290 >gi|27262374|gb|AAN87468.1| Dimethyladenosine transferase [Heliobacillus mobilis] Length = 283 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 145/285 (50%), Gaps = 18/285 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S L+ ++ Y I KK +GQNFL D + +I +++ G V+EIG GP LT L Sbjct: 2 SKELRQRIAQYGIRAKKGLGQNFLSDSEYVYRIVDAAELSSGDVVVEIGPGPATLTPHLA 61 Query: 67 TL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRI 121 KV+ IE D+ P+L D+ ++P ++EI+ DALKVD++ P + Sbjct: 62 EAVGPEGKVLAIEVDESLRPLLMDLCREYP-QVEILWQDALKVDYDAVTAPYRGDKPFTL 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T ++ + + ++ QKEV +R+ A+ + YG LSV + Sbjct: 121 VANLPYYITTPIMMGLLEGRFN---LSHMVIMVQKEVADRMLARAGTKDYGALSVAVQYH 177 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239 + ++ + P F P PKV+S V+ P ++ ++ + AF +RRKTL Sbjct: 178 CEVKLVTKVPPGAFIPPPKVSSAVVRLNRRRQPPVHVFDEKAFFRVVRAAFNQRRKTLLN 237 Query: 240 SLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 +L LG E L QAGI+ R E L++++F R+T+ L Sbjct: 238 ALGGLGLEMTKTEMSERLAQAGIDPGRRGETLNLDEFARVTDALY 282 >gi|166710725|ref|ZP_02241932.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 262 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + ++ L II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ T +F + P F P PK Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + A + + Sbjct: 183 VDSAVVRLVPRDPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAQVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|94309384|ref|YP_582594.1| dimethyladenosine transferase [Cupriavidus metallidurans CH34] gi|118600890|sp|Q1LRA1|RSMA_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|93353236|gb|ABF07325.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Cupriavidus metallidurans CH34] Length = 278 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 121/270 (44%), Gaps = 16/270 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL+D I+ I + V+EIG G G LT LL + V Sbjct: 6 HQGHVARKRFGQNFLVDDGIIHGIVSAIDPQPNDIVVEIGPGLGALTDPLLERLPG-MQV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ + +RL + DAL DF K +RI+ NLPYNI + LLF Sbjct: 65 VELDRDLVERLRRR---YGDRLVVHAGDALAFDFGKLREPGRALRIVGNLPYNISSPLLF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV ER+ A S YGRLS++ R + D+ P F Sbjct: 122 HLV---DFADDVRDQHFMLQKEVVERMVADPGSKSYGRLSIMLQVRYHMEHVLDVPPASF 178 Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 P PKV S V+ IP C L + AF +RRK LR +L L Sbjct: 179 NPPPKVDSAVVRMIPWPRAEDGTLRSPYAACDAGVLGDVVTAAFSQRRKVLRNTLSFLRD 238 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + G + RAE + + ++ + I+ Sbjct: 239 QVDFDALGFDLTRRAEEVPVAEYVELARIV 268 >gi|227432115|ref|ZP_03914127.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352142|gb|EEJ42356.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 303 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 152/291 (52%), Gaps = 20/291 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + IL+ Y + KK GQNFL DLN+L I E++ VIEIG G G LT Sbjct: 15 IANPTRT-QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALT 73 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118 + L A+KV+ E D Q +L D + N +++I++D LKVD K F ++ Sbjct: 74 EQLA-RSAKKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKIISEEFGDNAH 131 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++I+ANLPY I T +L + ++ W+++ ++ Q+EV +R+ A + YG L++ Sbjct: 132 VKIVANLPYYITTPILIQLLRSNIN---WDNIVVMMQREVADRLNAAVGTKSYGVLTLTI 188 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTL 237 + +AT+ + F PSP V S V+ P I + L + + +F RRK+L Sbjct: 189 QYFAQATLAIKVPASSFNPSPNVDSAVVKLTPLKPTTIVENVGKLFGVIKGSFSHRRKSL 248 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++ + G++ L A I+ +RAE L++E F ++ +L D Sbjct: 249 WNNMLQTYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLVLRDQ 299 >gi|309775087|ref|ZP_07670100.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 3_1_53] gi|308917201|gb|EFP62928.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 3_1_53] Length = 285 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 14/278 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + + KK GQNFL++ I+ KIA + + V EIG G G LTQ L Sbjct: 8 PSRTKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVISNHCVVFEIGPGIGALTQYLC 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A+KVI E D++ +L D ++ N E++ D L+ D E + I + Sbjct: 68 EY-AKKVISFEIDERLPEVLADTLQEYDN-FELVMTDFLETDLNHWCEPYKKEGCDIVVA 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +LF + +++T++ QKEV +R A N+ Y LS++T +R Sbjct: 126 ANLPYYITTPILFKIFESGAP---IDAITVMMQKEVADRFAATVNTKDYNALSIITQYRC 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + + +VF P P V S V+ F P E + + F +RRKT+ + Sbjct: 183 EVLPVMKVPKNVFLPKPNVDSAVLQFRFKETPSDIDEELFFPLVKACFRQRRKTILNNYG 242 Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNI 275 + L ++GI RAE++++E+F R+ + Sbjct: 243 EYIQDKQRARDELEKSGIACARRAESVTLEEFIRLYEV 280 >gi|325141930|gb|EGC64370.1| dimethyladenosine transferase [Neisseria meningitidis 961-5945] gi|325197917|gb|ADY93373.1| dimethyladenosine transferase [Neisseria meningitidis G2136] Length = 259 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F NI +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E++ ++N L Sbjct: 235 PQDRAEHIAPEEYVALSNYLA 255 >gi|241896677|ref|ZP_04783973.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC 33313] gi|241870158|gb|EER73909.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC 33313] Length = 298 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 21/283 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + I++ + I KK +GQNFL D+NILK I + VIEIG G G LT+ L Sbjct: 13 TQAIMNSFGINTKKSLGQNFLTDINILKNIVAAGNVQPTDNVIEIGPGIGALTEQLA-RA 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIAN 124 A++V+ E D + P+L+ + + N + ++ D L VD E+ F + +P++++AN Sbjct: 72 AKQVVAFEIDDRLIPVLEHTMAPYDN-VTVVNQDILTVDLEQAIKEHFTDPEAPLKLVAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY I T +L + +D + ++ ++ QKEV R++A+ + YG L++ +R A Sbjct: 131 LPYYITTPILMQVLQSDVK---FANIVVMMQKEVASRLSAEVGTKDYGALTLAVQYRMNA 187 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK 242 T+ F +S F P+P V S +I P +P + L + + F RRKTL +L Sbjct: 188 TLAFTVSRTAFVPNPNVDSAIISLTPREPLKVLPHNEKQLFNLFKIGFTMRRKTLWNNLI 247 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 G++ L ++ +RAE LS+E F + N L Sbjct: 248 TAFGKDDAMKAKLTAALADIDLDPRIRAEKLSLEKFIDLHNAL 290 >gi|116618707|ref|YP_819078.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271093|sp|Q03VR7|RSMA_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116097554|gb|ABJ62705.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 295 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 20/291 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + IL+ Y + KK GQNFL DLN+L I E++ VIEIG G G LT Sbjct: 7 IANPTRT-QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALT 65 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118 + L A+KV+ E D Q +L D + N +++I++D LKVD K F ++ Sbjct: 66 EQLA-RSAKKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKVISEEFGDNAH 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++I+ANLPY I T +L + ++ W+++ ++ Q+EV +R+ A + YG L++ Sbjct: 124 VKIVANLPYYITTPILIQLLRSNIN---WDNIVVMMQREVADRLNAAVGTKSYGVLTLTI 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTL 237 + +AT+ + F PSP V S V+ P + L + + +F RRK+L Sbjct: 181 QYFAQATLAIKVPASSFNPSPNVDSAVVKLTPLKPTTVVENVGKLFGVIKGSFSHRRKSL 240 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++ + G++ L A I+ +RAE L++E F ++ L D Sbjct: 241 WNNMLQTYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLALRDQ 291 >gi|161830385|ref|YP_001595993.1| dimethyladenosine transferase [Coxiella burnetii RSA 331] gi|226729775|sp|A9N9I7|RSMA_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|161762252|gb|ABX77894.1| dimethyladenosine transferase [Coxiella burnetii RSA 331] Length = 258 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 99/261 (37%), Positives = 142/261 (54%), Gaps = 8/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ +K GQ+FL D +L+KI + T++EIG G G LT LLT + ++E Sbjct: 3 KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ +Q N + I Q+DAL+ DF P+R++ NLPYNI T LLF+ Sbjct: 62 IDRDLVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 S E + + QKEV RITA+ S YGRLSV+ + T +F +SP F P Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTP 176 Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S +I IP N P+ L+ L + +EAF RRKT+ +LK+L + I Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236 Query: 256 ETNLRAENLSIEDFCRITNIL 276 LR + L++EDF +I+NIL Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257 >gi|78046456|ref|YP_362631.1| dimethyladenosine transferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|119365862|sp|Q3BX82|RSMA_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78034886|emb|CAJ22531.1| Dimethyladenosine transferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 262 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 126/257 (49%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRR-HGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L ++++ L II D L VDF N +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEVAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + A + + Sbjct: 183 VDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHFDAAQVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|46190717|ref|ZP_00206545.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Bifidobacterium longum DJO10A] Length = 321 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 28 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 87 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 88 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 203 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 204 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 263 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 264 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316 >gi|332978369|gb|EGK15092.1| dimethyladenosine transferase [Psychrobacter sp. 1501(2011)] Length = 297 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 141/295 (47%), Gaps = 20/295 (6%) Query: 1 MTMNN-KSHSLKTILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MT ++ H L + L K P+K GQNFL D +I+ +I +S G ++EIG G Sbjct: 1 MTHSDASKHPLHSTLQKAAKHQPRKRFGQNFLHDDSIIIQIVDSIGLNRDDNLVEIGPGM 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFN--- 114 G LT+ LL + VIE D+ L+ I + I+ +A++ D+ +N Sbjct: 61 GALTEPLLEQ-VDAMTVIELDRDLASSLRIRIGANSHPNFHIVNTNAMQFDYSTLYNKEG 119 Query: 115 ---ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + +RI+ NLPYNI T LLF + + E + + QKEV ERITA S Y Sbjct: 120 EGAETKKLRIVGNLPYNISTPLLFTLLD---YSDIIEDMHFMLQKEVVERITADVGSKIY 176 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK-ITQEA 229 GRLSV+ + + + + F P PKVTS V PH P+ E L + +E Sbjct: 177 GRLSVIMQYHCETEYLLTVPRGAFNPPPKVTSAVFRLRPHLTKPVQAEDEKLFALVVRET 236 Query: 230 FGKRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F RRKTLR K+ + GIE R E L ++DF ++N++ Sbjct: 237 FNHRRKTLRAIFKQSSLMATLTDEDFDSIGIEGTARPETLDVKDFVALSNLVNSK 291 >gi|15838739|ref|NP_299427.1| dimethyladenosine transferase [Xylella fastidiosa 9a5c] gi|9107283|gb|AAF84947.1|AE004029_7 dimethyladenosine transferase [Xylella fastidiosa 9a5c] Length = 290 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 120/258 (46%), Gaps = 8/258 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+FL+D + +I + ++EIG G G +T LL + IE D+ Sbjct: 35 AKKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 93 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWIS 139 L ++ +L+II D L VD +R++ NLPYNI + +LF+ + Sbjct: 94 DLIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGNLPYNISSPILFHVLQ 152 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEV +R+ A S YGRLSV+ + T MF + P F P P Sbjct: 153 QAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPP 209 Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S + +P + I + AFG+RRKTLR SL + AGI T Sbjct: 210 KVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 269 Query: 258 NLRAENLSIEDFCRITNI 275 N RAE L + +F + N Sbjct: 270 NARAEQLEVTEFIALANA 287 >gi|325928235|ref|ZP_08189440.1| dimethyladenosine transferase [Xanthomonas perforans 91-118] gi|325541395|gb|EGD12932.1| dimethyladenosine transferase [Xanthomonas perforans 91-118] Length = 262 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRR-HGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + ++ L II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AAA---VTDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + A + + Sbjct: 183 VDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHFDAAQVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|329903504|ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] gi|327548327|gb|EGF33015.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] Length = 259 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 136/260 (52%), Gaps = 7/260 (2%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + +K GQNFL D +L+ I ++ ++EIG G G +T++ L ++ V+E Sbjct: 2 KHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRL-LLDDLDQLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136 D+ L+ P +L I DAL+ DF +R++ NLPYNI + LLF+ Sbjct: 61 LDRDLVVRLQKTFD--PKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNISSPLLFH 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + + QKEV ER+ A YGRLSV+ WR ++ F + P F Sbjct: 119 L---ASFTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPTAFD 175 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ IP +P+PC ++L+ + +AF RRK LR L + EN L AG++ Sbjct: 176 PPPRVESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDAGVD 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 LR E +S+E + + N L Sbjct: 236 PTLRPETISLEQYVGLANRL 255 >gi|221633286|ref|YP_002522511.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159] gi|221155685|gb|ACM04812.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159] Length = 297 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 18/282 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ +L I P+K +GQ+FL D I+++I E++ V+EIG G G LT+ L Sbjct: 26 PVRQVLRELGIRPRKALGQHFLHDRAIVRRIVETAQLPPDALVVEIGPGLGILTEELA-R 84 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 AR VI +E D + L + H + I+ DAL+VD P ++ANLPYN Sbjct: 85 WARSVIAVELDARLAEQLAERF--HGTNVRIVHGDALEVDLAALTGQC-PYFVVANLPYN 141 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + T +L +++D P E L ++ Q+EV ER+ A+ + Y L VL + + F Sbjct: 142 VATPILERLLTSDHPP---ERLVVMVQREVAERMAARPPAMSY--LGVLVQFFALPRVAF 196 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 I P F P PKV S V+ P+P +S + + F +RRK L +L G Sbjct: 197 RIGPGAFTPPPKVESAVVVLDRRTPPLPKHHWDSFFALVRAGFAQRRKMLLNALATATGM 256 Query: 248 N------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + LL +AGIE + RAE L++E++ R+ +L ++D+A Sbjct: 257 DKEMLRALLQRAGIEPSRRAETLTVEEWLRLWRVL--HEDVA 296 >gi|313900886|ref|ZP_07834376.1| dimethyladenosine transferase [Clostridium sp. HGF2] gi|312954306|gb|EFR35984.1| dimethyladenosine transferase [Clostridium sp. HGF2] Length = 291 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 137/281 (48%), Gaps = 14/281 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + + KK GQNFL++ I+ KIA + D V EIG G G LTQ L Sbjct: 8 PSRTKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVLSDHCVVFEIGPGIGALTQYLC 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A+KV+ E D++ +L D ++ N E++ D L++D + + I Sbjct: 68 EY-AKKVVSFEIDERLPDVLADTLQEYDN-FELVMSDFLEIDLKEWCRTYREEGYDVVIA 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +LF + ++T++ QKEV +R A+ N+ Y LS++T +R Sbjct: 126 ANLPYYITTPILFKIFESKA---DVAAITVMMQKEVADRFAAEVNTKDYNALSIITQYRC 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + T + + +VF P P V S V+ F P ES + + F +RRKT+ + Sbjct: 183 EVTPVMKVPKNVFLPKPNVDSAVLQFRFRDTPQNIEEESFFPLVKACFRQRRKTILNNYG 242 Query: 243 RLGGENL-----LHQAGIETNLRAENLSIEDFCRITNILTD 278 + L ++GI+ RAE++++ +F + + + Sbjct: 243 EYCQDKQQARAELEKSGIDCTRRAESVTLAEFINLYEVHRN 283 >gi|329768941|ref|ZP_08260368.1| dimethyladenosine transferase [Gemella sanguinis M325] gi|328836658|gb|EGF86316.1| dimethyladenosine transferase [Gemella sanguinis M325] Length = 286 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M IL + KK +GQNFL+D NIL +I + +G D + VIEIG G G+LT Sbjct: 1 MIGTPKKTFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGINDKVGVIEIGPGIGSLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118 + + A++VI E D + PIL + + + N +EII +D LKVD +K Sbjct: 61 EAVAKR-AKRVISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIEEKMSDCEK 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I ++ANLPY I T +L + I + ++ Q+EV R+ A+ + Y L++L Sbjct: 119 IMVVANLPYYITTPILTHLIENTK---RIDGYVVMMQREVANRLNAKVGTKDYNSLTILL 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + T +F + VF P+P V S V+ + K + F +RRKTL Sbjct: 176 NYYTNVEYLFTVPKKVFVPAPNVESAVVKIMTKDEKEFEADSKFFKFVRSCFVQRRKTLL 235 Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269 +L G++ + I++ R+E LS+ +F Sbjct: 236 NNLISSYGKDKKQELQNSCLDSEIDSTRRSETLSLREF 273 >gi|21241633|ref|NP_641215.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri str. 306] gi|294625753|ref|ZP_06704372.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664835|ref|ZP_06730156.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|27151571|sp|Q8PP25|RSMA_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21106994|gb|AAM35751.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri str. 306] gi|292599923|gb|EFF44041.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605391|gb|EFF48721.1| dimethyladenosine transferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 262 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + ++ L II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEAAAPI-GALRIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + A + + Sbjct: 183 VDSAVVRLVPRDPATVLINDRRRFADVVRAGFGQRRKTLRNALSAICEPAHFDAAQVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|258452826|ref|ZP_05700821.1| dimethyladenosine transferase [Staphylococcus aureus A5948] gi|257859512|gb|EEV82365.1| dimethyladenosine transferase [Staphylococcus aureus A5948] Length = 297 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 10 PSRTRALLDKYGFNLKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 70 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287 >gi|189440314|ref|YP_001955395.1| dimethyladenosine transferase [Bifidobacterium longum DJO10A] gi|226729757|sp|B3DP38|RSMA_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189428749|gb|ACD98897.1| Dimethyladenosine transferase for rRNA methylation [Bifidobacterium longum DJO10A] Length = 307 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++I +G V+E+G G G+LT +L Sbjct: 14 AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 73 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120 GA + +E D L + + +RL ++ DAL V E F+ + Sbjct: 74 ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T +L + + + QKEV +R+ A+ S YG SV W Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228 A + I +VF+P+P V S ++ F + P E + ++ Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 249 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 AFG+RRKTL +LK + AGI+ R E L+I +F + + D Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302 >gi|28199096|ref|NP_779410.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1] gi|32129656|sp|Q87C85|RSMA_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|28057194|gb|AAO29059.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1] Length = 265 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+FL+D + +I + ++EIG G G +T LL + IE D+ Sbjct: 10 AKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 68 Query: 81 QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138 L ++ P +L+II D L VD +R++ NLPYNI + +LF+ + Sbjct: 69 DLIAPL--TAAATPIGKLDIIHRDVLTVDLSILAKQGNKKLRLVGNLPYNISSPILFHVL 126 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRLSV+ + T MF + P F P Sbjct: 127 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 183 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S + +P + I + AFG+RRKTLR SL + AGI Sbjct: 184 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 243 Query: 257 TNLRAENLSIEDFCRITNI 275 TN RAE L + +F + N Sbjct: 244 TNARAEQLEVTEFIALANA 262 >gi|295398232|ref|ZP_06808278.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563] gi|294973582|gb|EFG49363.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563] Length = 301 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL + + KK +GQNFL + IL+ + + +G IEIG G G LT+ L + A+ Sbjct: 19 AILKKFNLDAKKSLGQNFLTEPQILQHMVDVAGVDKDTNAIEIGPGIGALTEFLA-INAK 77 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD---FEKFFNISSPIRIIANLPYN 128 +V+ E DQ+ P+L D S + N + I D L+ D F + ++ANLPY Sbjct: 78 EVLAFEIDQRLLPVLADTLSDYDN-VTIKHQDILEADLNATMAAFPPAERTVVVANLPYY 136 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++FN + A ++ L+ QKEV ER+TA + YG LSV + A + F Sbjct: 137 ITTPIIFNLLEASFH---FDQFILMMQKEVAERLTAAPGTKAYGSLSVAIQYYCDAEIAF 193 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + VF P P V S ++ P + + +F +RRKT+ +L+ G Sbjct: 194 TVPRTVFNPQPNVDSAILALNKLDKPRITVENEAFFFHLVRSSFKQRRKTIWNNLRAAFG 253 Query: 247 EN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277 + L AG++ RAE L+I DF + + L Sbjct: 254 KEEAVVEKMVKALEIAGVDQKQRAETLTIADFGHLADALY 293 >gi|325981519|ref|YP_004293921.1| dimethyladenosine transferase [Nitrosomonas sp. AL212] gi|325531038|gb|ADZ25759.1| dimethyladenosine transferase [Nitrosomonas sp. AL212] Length = 254 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 95/262 (36%), Positives = 129/262 (49%), Gaps = 11/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K GQNFL D I+ KI +IEIG G G LT+ LL + V+E Sbjct: 2 RHNPRKRFGQNFLFDQYIINKIITEFYPRKDDRIIEIGPGLGALTRPLL-QAIDHLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ LK S L I DAL+ DF N +RII NLPYNI T LLF+ Sbjct: 61 IDRDIVDKLKIEFSH--ENLTIHAADALQFDFSALGNQ---MRIIGNLPYNISTPLLFHL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV ER+ + YGRLSV+ +R +FD+ F P Sbjct: 116 ---SQFSEHILDMHFMLQKEVVERMVGVPGTSDYGRLSVMLQYRFDMEYVFDVPAESFRP 172 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ IP P+ ++ +I AF +RRKTLR +L++ I Sbjct: 173 QPKVESAIVRMIPRPIPLSMTVDETLFSQIVLAAFSQRRKTLRNALQQYLTVEDFSALNI 232 Query: 256 ETNLRAENLSIEDFCRITNILT 277 ++ LRAENL +E F IT+ LT Sbjct: 233 DSGLRAENLPVEKFVAITHFLT 254 >gi|302332206|gb|ADL22399.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus JKD6159] Length = 297 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 10 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 70 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI++ R E LSI+DF ++ Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDSRRRGETLSIQDFAKLYE 287 >gi|315651949|ref|ZP_07904951.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986] gi|315485778|gb|EFU76158.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986] Length = 297 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 149/296 (50%), Gaps = 24/296 (8%) Query: 1 MT-MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT + N ++++ I+ Y +K GQNFL+D ++L KI SG IEIG G G Sbjct: 8 MTKIANPANTI-DIIKKYDFNFQKKFGQNFLIDTHVLDKICSESGLGKNDLAIEIGPGIG 66 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--- 116 LTQ L + A+ V+ +E D+ PIL D + N E+I D LKVD EK + Sbjct: 67 ALTQYLA-ITAKAVVAVEIDKNLLPILGDTLKDYKNT-ELINADFLKVDLEKLIDECIQK 124 Query: 117 ----SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 IRIIANLPY I T ++ N + + T +S+T++ QKEV +R+ A S +YG Sbjct: 125 YGEFDNIRIIANLPYYITTPIIMNVLESHTH---IDSITVMIQKEVADRMQAAPGSKNYG 181 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230 LS+ + + ++ + + F P PKV S+VI + + + + +I + F Sbjct: 182 ALSLAVQYYSDPYVVAFVPQNCFIPRPKVGSSVIRLDIYKDKPIKTVNEKLMFQIIRAGF 241 Query: 231 GKRRKTLRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +RRKTL SL + + L G +R E LS+++F ++ L + Sbjct: 242 NQRRKTLVNSLINFEGLQFSKNKIIHALSLLGKSEKIRGEALSLDEFAQLAEYLQE 297 >gi|317402409|gb|EFV82981.1| dimethyladenosine transferase [Achromobacter xylosoxidans C54] Length = 263 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 11/263 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQNFL D ++++ I + G TV+EIG G LT+ LL + +E Sbjct: 3 QHQARKRFGQNFLTDESVVESIVRAVNPARGDTVVEIGPGLSALTRPLLERL-DHLTAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + RL +++ DAL VDF +F + +R++ NLPYNI + LLF+ Sbjct: 62 IDRDLAARLRKQFEE--GRLTVVEADALTVDFSQF---GAGLRVVGNLPYNISSPLLFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ W + Q+EV +R+ AQ S + RLSV+ R + +FD+ P F P Sbjct: 117 MA---WADHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDP 173 Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ +P P + + + AF +RRK LR+ L + I Sbjct: 174 PPKVVSAIVRMVPLPAERLRPVSARAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDI 233 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 RAE++S++ + +++ L + Sbjct: 234 APTARAEDISVDRYIHLSDALVE 256 >gi|299067921|emb|CBJ39135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum CMR15] Length = 281 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 11/269 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + ++EIG G G LT L+ + V Sbjct: 9 HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ ++L + DAL DF +RI+ NLPYNI + LLF Sbjct: 68 VELDRDLVARLQRRFG---DKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + QKEV ER+ A S + RLSV+ R ++ ++ P F Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSF 181 Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ IP P + +L + AF +RRK LR +L L Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFD 241 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE + + +F + N L ++ Sbjct: 242 ALGFDLGRRAEEVPVAEFVAVANALPADR 270 >gi|113866543|ref|YP_725032.1| dimethyladenosine transferase [Ralstonia eutropha H16] gi|122947140|sp|Q0KEA7|RSMA_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113525319|emb|CAJ91664.1| dimethyladenosine transferase (rRNA methylation) [Ralstonia eutropha H16] Length = 280 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 16/270 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H + +K GQNFL+D I+ I + ++EIG G G LT LL ++ V Sbjct: 6 HQGHVARKRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIP-QMQV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ + RL++ DAL DF+K P+RI+ NLPYNI + LLF Sbjct: 65 VELDRDLVERLRRR---YGERLQVHAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLLF 121 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV ER+ A+ S +GRLS++ R + D+ P F Sbjct: 122 HLM---DFADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGAF 178 Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 P PKV S V+ IP C + L + AF +RRK LR +L L Sbjct: 179 NPPPKVDSAVVRMIPWPRHSDGRLRSPHADCDITVLGDVVTAAFSQRRKVLRNTLSFLRD 238 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + G + RAE + + ++ + L Sbjct: 239 QVDFDAMGFDLGRRAEEVPVGEYVELARRL 268 >gi|17545237|ref|NP_518639.1| dimethyladenosine transferase [Ralstonia solanacearum GMI1000] gi|27151581|sp|Q8Y219|RSMA_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|17427528|emb|CAD14046.1| probable dimethyladenosine transferase (s-adenosylmethionine-6-n',n'-adenosyl(rrna) dimethyltransferase) (16s rrna dimethylase) (high level kasugamycin resistance protein ksga) (kasugamycin dimethyltransferase) [Ralstonia solanacearum GMI1000] Length = 281 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 118/265 (44%), Gaps = 11/265 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + ++EIG G G LT L+ + V Sbjct: 9 HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ ++L + DAL DF +RI+ NLPYNI + LLF Sbjct: 68 VELDRDLVARLQRRFG---DKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + QKEV +R+ A S + RLSV+ R ++ ++ P F Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSF 181 Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ IP P + +L + AF +RRK LR +L L Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFD 241 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 G + RAE + + DF + N L Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANAL 266 >gi|71065521|ref|YP_264248.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4] gi|119365049|sp|Q4FT44|RSMA_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71038506|gb|AAZ18814.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4] Length = 287 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 140/284 (49%), Gaps = 14/284 (4%) Query: 1 MTMNN-KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M+ + + S+ L K P+K GQNFL D +++++I ES +IEIG G G Sbjct: 1 MSKISFDAQSISNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFF-NISS 117 LT+ LL + V+E D+ L+ I + II+D+A+ VD+ + + Sbjct: 61 ALTEPLLAE-VDAMTVVELDRDLADSLRIRIGANSHPNFTIIKDNAMHVDYRELYSEERG 119 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +R++ NLPYNI T +LF+ +S E + + QKEV ERITA S YGRLSV+ Sbjct: 120 KLRVVGNLPYNISTPILFHLLSYAD---VIEDMHFMLQKEVVERITADVGSKTYGRLSVI 176 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK-ITQEAFGKRRK 235 + + + F P PKVTS V PH + P+ E + +E F RRK Sbjct: 177 MQYHCHTDYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRK 236 Query: 236 TLRQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274 TLR K+ E+ I+ R E L+++DF ++N Sbjct: 237 TLRAIFKKSTLLPTLSEDDFAACAIDPQARPETLNVKDFVNLSN 280 >gi|261377894|ref|ZP_05982467.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685] gi|269145748|gb|EEZ72166.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685] Length = 261 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 130/266 (48%), Gaps = 11/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE Sbjct: 4 HKARKRFGQNFLQDTRIINDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVATPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282 RAE+++ E + ++N LT D Sbjct: 235 PQDRAEHVAPEKYVALSNYLTGKADA 260 >gi|317495931|ref|ZP_07954294.1| dimethyladenosine transferase [Gemella moribillum M424] gi|316914108|gb|EFV35591.1| dimethyladenosine transferase [Gemella moribillum M424] Length = 286 Score = 267 bits (684), Expect = 9e-70, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 133/278 (47%), Gaps = 16/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M IL + KK +GQNFL+D NIL +I + +G + + VIEIG G G+LT Sbjct: 1 MIGTPKKTFEILKKHGFTFKKSLGQNFLIDANILNRIIDGAGINETVGVIEIGPGIGSLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118 + + A+KVI E D + PIL + + + N +EII +D LKVD + Sbjct: 61 EAIAK-KAKKVISFEIDGRLLPILSETLADY-NNVEIINNDILKVDVDNIIAEKMSDCDK 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I ++ANLPY I T +L + I + ++ Q+EV R+ A+ + Y L++L Sbjct: 119 IMVVANLPYYITTPILTHLIENTEK---IDGYVVMMQREVANRLNAKVGTKDYNSLTILL 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + T +F + VF P+P V S V+ + + K + F +RRKTL Sbjct: 176 NYYTDVEYLFTVPKKVFVPAPNVESAVVKIMTKEKKEFEVDQKFFKFVRSCFVQRRKTLL 235 Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269 +L G++ IE R+E L++ +F Sbjct: 236 NNLISSYGKDKKQDLQASCFDSEIEATRRSETLTLTEF 273 >gi|78485998|ref|YP_391923.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2] gi|119365859|sp|Q31F24|RSMA_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78364284|gb|ABB42249.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2] Length = 266 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 12/272 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ ++ KK GQNFL + I+++I + ++EIG G LT LL + +K+ Sbjct: 1 MAKHQH--KKRFGQNFLNNDRIIQQIVAAIAPKPDQHLVEIGPGEAALTGPLLDI-VKKL 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIG 130 +IE D L S +P + DAL D+ + + +RI+ NLPYNI Sbjct: 58 DIIEIDNDLIGPLTKRFSHNPA-FHLHHTDALLFDYSQLLEAETETPSLRIVGNLPYNIS 116 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + LLF+ + + + + + QKEV ERITAQ YGRLSV+ + + + + Sbjct: 117 SPLLFHLLKYAR---YIQDMHFMLQKEVVERITAQPGVKAYGRLSVMIQYTCETEYLLTV 173 Query: 191 SPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P PKV S ++ P + K+ ++AF ++RKTLR +LK + Sbjct: 174 GPENFTPPPKVDSAIVRLRPFEKRPFQAIDDKDFAKLVKQAFSQKRKTLRNNLKGFLNDE 233 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + G++ ++RAE + +E F ++N+ ++ Sbjct: 234 QIEACGLDPSVRAEKVPVEAFVLLSNLYHKDK 265 >gi|331002316|ref|ZP_08325834.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str. F0167] gi|330410132|gb|EGG89566.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str. F0167] Length = 292 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 152/297 (51%), Gaps = 24/297 (8%) Query: 1 MT-MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT + N ++++ I+ Y +K GQNFL+D ++L KI +SG IEIG G G Sbjct: 1 MTNIANPANTI-EIIKKYDFSFQKKFGQNFLIDTHVLDKICLASGLGGNDLAIEIGPGIG 59 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--- 116 +LTQ L A+ V+ IE D+ PIL + + + N + II D LK+D +K Sbjct: 60 SLTQYLANT-AKAVVAIEIDKNLLPILNETLANYKN-ISIINADFLKIDLKKLIEDCRQK 117 Query: 117 ----SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 IRI+ANLPY I T ++ N + + +S+T++ QKEV +R+ A YG Sbjct: 118 YGEFENIRIVANLPYYITTPIIMNVLESHIH---IDSITVMIQKEVADRMQALPGGKDYG 174 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAF 230 LS+ + + ++ + P+ F P PK+ S+VI I PI E L +I + F Sbjct: 175 ALSLAVQYYSDPYVVAFVPPNCFIPRPKIGSSVIRLDIYKEKPIKADNEKLMFQIIRAGF 234 Query: 231 GKRRKTLRQSLKRLG-----GENLLHQ---AGIETNLRAENLSIEDFCRITNILTDN 279 +RRKTL S+ G E ++H G +R E LS+E+F ++ L D+ Sbjct: 235 NQRRKTLVNSIGNFGEFNFSKEKIIHALSLLGKSEKIRGEALSLEEFAKLAGYLKDS 291 >gi|300692471|ref|YP_003753466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum PSI07] gi|299079531|emb|CBJ52209.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ralstonia solanacearum PSI07] Length = 281 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 11/269 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + ++EIG G G LT L+ + V Sbjct: 9 HQGHQARKRFGQNFLVDEGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ ++L + DAL DF +RI+ NLPYNI + LLF Sbjct: 68 VELDRDLVVRLQRRFG---DKLIVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + QKEV +R+ A S + RLSV+ R + D+ P F Sbjct: 125 HL---SAFADRIRDQHFMLQKEVVDRMVAVPGSKAFSRLSVMLQVRYYMEPVLDVPPGSF 181 Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ IP P + +L + AF +RRK LR +L L Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFD 241 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE + + DF + N L ++ Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANALPADR 270 >gi|169335103|ref|ZP_02862296.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM 17244] gi|169257841|gb|EDS71807.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM 17244] Length = 287 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 148/290 (51%), Gaps = 18/290 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NK +++ I + Y KK +GQNFL D NI+ KI +S D V+E+G G G+ Sbjct: 1 MKATNK-NTISEITNKYDFRFKKDLGQNFLTDENIVLKIVDSLELTDDEVVLEVGPGMGS 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116 LTQ L A KV +E D + +L++ S++ N +EII D LK D + + Sbjct: 60 LTQKLAER-AYKVYAVEIDTRAVNMLEETLSEY-NNIEIINKDILKTDLREILEDAIKEN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I+ I+NLPY I + +L + +E++ ++ QKEV R+ A+ N+ Y ++ Sbjct: 118 RKIKFISNLPYYITSPILMKVLEDKV---MFENIVVMLQKEVATRLNAKVNTKDYSSFTI 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234 + + +F++ VF P PKV STV+ +P + K+ + AF RR Sbjct: 175 AVDYYAEVERLFNVPKTVFVPMPKVDSTVLRVVPRKESKVDVDNQDMFFKVVKAAFMNRR 234 Query: 235 KTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K + SL +N L +G++ +RAEN++IE F +++N + + Sbjct: 235 KMVFNSLANGLAVNKDLLKNALLNSGLDEKVRAENITIEQFAKLSNEINN 284 >gi|293399847|ref|ZP_06643993.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306247|gb|EFE47490.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 285 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 144/283 (50%), Gaps = 14/283 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL + + KK GQNFL + ++++KIA S+ D V EIG G G LTQ L Sbjct: 8 PSRTKEILETHDLFAKKNYGQNFLTEPSVVEKIARSAIVSDHCVVFEIGPGIGALTQYLC 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRII 122 A++V+ E D++ +L D S++ N + ++ D L +D ++ N + I Sbjct: 68 EY-AKEVVCFEIDERLPHVLADTLSEYTN-VSVVLQDFLTIDLREWVNRYREKGMDVVIA 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +LF ++ ++T++ QKEV +R A+ N+ Y LS++T +R Sbjct: 126 ANLPYYITTPILFKIFESNA---DIAAITVMMQKEVADRFHAKVNTKEYNALSIITQYRC 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + +VF P P V S V+ F + ES + + F +RRKT+ + + Sbjct: 183 DVRAVMKVPKNVFHPKPNVDSAVLQFTFRKHYANLKEESFFAMVKACFKQRRKTILNNFQ 242 Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + L +A I+ RAE+L++++F + ++ D++ Sbjct: 243 EYCSDKETAKAYLEKADIDAKRRAESLTLDEFLHLYEVMQDDR 285 >gi|325922418|ref|ZP_08184187.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865] gi|325547115|gb|EGD18200.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865] Length = 262 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 125/257 (48%), Gaps = 8/257 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVAPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L D ++ L II D L VDF N +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTDAAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + QKEV +R+ A S YGRLSV+ + T +F + P F P PK Sbjct: 126 AGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182 Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ +P + + FG+RRKTLR +L + A + + Sbjct: 183 VDSAVVRLVPRDPATVLIKDRRRFADVVRAGFGQRRKTLRNALSEVCEPAHFEAAQVRPD 242 Query: 259 LRAENLSIEDFCRITNI 275 RAE L + DF R+ N+ Sbjct: 243 ARAEQLEVADFIRLANV 259 >gi|323438725|gb|EGA96465.1| dimethyladenosine transferase [Staphylococcus aureus O11] gi|323442063|gb|EGA99698.1| dimethyladenosine transferase [Staphylococcus aureus O46] Length = 303 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + +L Y KK +GQNFL+D+NI+ I ++S VIEIG G G+LT+ L Sbjct: 16 PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122 A++V+ E DQ+ P+L D S + N + +I +D LK + E I ++ Sbjct: 76 -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +L N + D + ++ QKEVGER+ A+ S YG LS++ + T Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + + VF P P V S V+ + P+ E+ K+ + AF +RRKT+ + Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKQMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250 Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274 + + L QAGI+ R E LSI+DF ++ Sbjct: 251 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 293 >gi|86134822|ref|ZP_01053404.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152] gi|85821685|gb|EAQ42832.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152] Length = 267 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 139/269 (51%), Gaps = 14/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D +I K IA++ V+EIG G G LT+ LL K V+E Sbjct: 3 VKAKKHLGQHFLTDESIAKDIADALTEEGYNHVLEIGPGMGVLTKYLLQKKP-KTTVLEL 61 Query: 79 DQQFFPILKDIS-------SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D++ LK++ + + +II+ D LK D + FN + II N PYNI T Sbjct: 62 DRESVSYLKEVFPIEHLNLNTTSDNFQIIEGDFLKKDLQTLFN-KEQVAIIGNFPYNIST 120 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F I + P + + FQKEV +RI ++ S YG LSVLT +F + Sbjct: 121 QIVFKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGILSVLTQAFFDVEYLFTVP 177 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P VF P PKV S VI I + +P + ++ + AF +RRK LR SLK + L Sbjct: 178 PTVFNPPPKVDSGVIRLIRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSFKLSDSL 237 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + I R E LS+++F +T + +N Sbjct: 238 KEDPI-FARRPEQLSVQEFISLTQKIANN 265 >gi|302390854|ref|YP_003826674.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501] gi|302202931|gb|ADL11609.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501] Length = 290 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 18/286 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + + IL I KK +GQNFL+D NI+ KI S+ VIEIG G G+LTQ L Sbjct: 7 NPSTTREILEENGIQLKKSLGQNFLVDRNIIDKIIVSADLTSYDHVIEIGPGIGSLTQRL 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIA 123 GA+ V IE D++F IL++ S + N + IQ DAL+ DFE+ I+++A Sbjct: 67 AE-GAKAVWAIELDERFIKILEENLSNY-NNVNFIQADALEYDFEQLLTKLSGESIKVVA 124 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS-PHYGRLSVLTGWRT 182 NLPY I T ++ + +E + ++ QKEV ERI A YG LS+ + + Sbjct: 125 NLPYYITTPIIMRLLEEKLP---FERVVVMVQKEVAERIVATPEDGKKYGSLSLAVRYYS 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 + + + VF P PKV S ++ P E L K+ Q AF +RRKT+R S Sbjct: 182 QPEITGTVPRTVFMPQPKVDSAIVKMEIRDKPPVEVKDEELLFKVIQAAFQQRRKTIRNS 241 Query: 241 --------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LKR + L + IE+ R E L +E F ++N + D Sbjct: 242 LSKAANLDLKRDLVDQALDKVDIESRRRGEKLDLERFTALSNSIFD 287 >gi|291542930|emb|CBL16040.1| dimethyladenosine transferase [Ruminococcus bromii L2-63] Length = 284 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 16/289 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++K ILS + K +GQNFL++ ++ ++AE SG+ +G+ VIE+G G G Sbjct: 1 MKKLSDIGTIKDILSRHGFTFSKSLGQNFLINPSVCPRMAELSGAGEGVGVIEVGPGIGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT L +L A KV+ +E D++ P+L++ S++ N ++++ DD LK+D K Sbjct: 61 LTTELCSL-ADKVVAVELDKRLLPVLEETLSEYDN-VKVVNDDILKIDLHKLIEEEFQGM 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + + ANLPY I + ++ + ++T++ QKE +RI A+ S G ++V Sbjct: 119 DVVVCANLPYYITSPVIMKLLEDRLP---ICAITVMVQKEAAQRICAEVGSRASGAVTVS 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRK 235 + + M+F +S F P+PKV S V+ P + K+ + AF +RRK Sbjct: 176 VNYYAEPEMLFSVSAGSFMPAPKVDSAVLRLNILKEPPVKVDDEKKFFKVVKAAFSQRRK 235 Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL SL + +L + + N RAE L +EDF I N L D Sbjct: 236 TLSNSLASGLSLPKAEVNAILDNSSVPLNARAEQLKLEDFANIANNLGD 284 >gi|27151609|sp|Q9PBJ6|RSMA_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 265 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 120/258 (46%), Gaps = 8/258 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQ+FL+D + +I + ++EIG G G +T LL + IE D+ Sbjct: 10 AKKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 68 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWIS 139 L ++ +L+II D L VD +R++ NLPYNI + +LF+ + Sbjct: 69 DLIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGNLPYNISSPILFHVLQ 127 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEV +R+ A S YGRLSV+ + T MF + P F P P Sbjct: 128 QAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPP 184 Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S + +P + I + AFG+RRKTLR SL + AGI T Sbjct: 185 KVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 244 Query: 258 NLRAENLSIEDFCRITNI 275 N RAE L + +F + N Sbjct: 245 NARAEQLEVTEFIALANA 262 >gi|325206459|gb|ADZ01912.1| dimethyladenosine transferase [Neisseria meningitidis M04-240196] Length = 259 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F NI +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|154498148|ref|ZP_02036526.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC 29799] gi|150273138|gb|EDN00295.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC 29799] Length = 290 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 143/291 (49%), Gaps = 19/291 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N + +K +L + K MGQNFL++ ++ + IA +SG+ V+EIG G G Sbjct: 1 MDLCN-VNDIKALLGRHGFRFSKSMGQNFLIEDHVPRDIAAASGADKDCGVLEIGPGIGP 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--- 117 LT L A +V+ +E D+ P+L + + N +EI+ D +K+D Sbjct: 60 LTVRLAER-AGRVVSVELDKALLPVLAETLAGRDN-VEIVPGDIMKLDIPALVAEKMDGL 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ANLPYNI T +L I A ++++T++ Q+EV RI A S YG SV Sbjct: 118 KPLACANLPYNITTPVLTALIEAG----CFQAITVMIQREVALRICAAPGSGDYGAFSVY 173 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKT 236 + T ++FD+ P F P+PKVTS+VI +P P + ++ + AF +RRKT Sbjct: 174 CQYHTTPELLFDVPPECFIPAPKVTSSVIRLVPRPAPEEVKDEKQFFRLVRAAFAQRRKT 233 Query: 237 LRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L +L G + + G+ ++R E L I +F + + L Sbjct: 234 LLNALSSAYGSQLSKDELRDAIAACGLPADVRGERLGIPEFAALADALAQR 284 >gi|328883016|emb|CCA56255.1| Dimethyladenosine transferase [Streptomyces venezuelae ATCC 10712] Length = 291 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 18/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 16 PADIRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 75 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L +R ++ DA+ V + P ++ Sbjct: 76 E-AADRVTAVEIDDVLAAALPSTIAARMPARADRFALVHSDAMHV---EELPGPPPTALV 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 132 ANLPYNVAVPVLLHMLER---FPSIERTLVMVQAEVADRLAAKPGNKVYGVPSVKANWYA 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P V S ++ + P+ + + + AF +RRKTLR + Sbjct: 189 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPLATTATRQEVFAVVDAAFAQRRKTLRAA 248 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 L G E L +AGI R E L++E+F RI Sbjct: 249 LATWAGSPAAAEEALVKAGISPQARGEGLTVEEFARIAEA 288 >gi|315604977|ref|ZP_07880031.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313256|gb|EFU61319.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 329 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 142/288 (49%), Gaps = 21/288 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I I P K +GQNF+ D +++I + G V+E+G G G+LT LL + Sbjct: 37 EVRAISEALGIRPTKVLGQNFVHDAGTVRRIVAAGDVRAGDEVVEVGPGLGSLTLALLEV 96 Query: 69 GARKVIVIEKDQQFFPILKD----ISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII 122 GAR V +E D L + + R ++ DA ++ + F + P +++ Sbjct: 97 GAR-VRAVEIDPPLASALPETIRSRMGEASGRFHVVTMDATEITGNEDFGVDWPPPTKLV 155 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L N + A P E++ ++ Q EV +R+ A+ S YG SV W Sbjct: 156 ANLPYNVAVPVLLNMLDA---FPTIEAVVVMVQAEVADRLAAEPGSRTYGVPSVKASWYG 212 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 + I VF+P P V S ++ P P E+L++ +T AFG+RRKTLR Sbjct: 213 EVQRAGTIGRTVFWPVPGVDSALVRLTRL--PSPRGDEALRRATFEVTDVAFGQRRKTLR 270 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +LK G E LL AGI+ R E LSI++F + + + ++ Sbjct: 271 AALKNWAGGPEASEALLCDAGIDPTRRGETLSIDEFVALGRAVLEARE 318 >gi|325203784|gb|ADY99237.1| dimethyladenosine transferase [Neisseria meningitidis M01-240355] Length = 259 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L + L AGI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAAGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|160914684|ref|ZP_02076898.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991] gi|158433224|gb|EDP11513.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991] Length = 285 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 14/281 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K IL+ + + KK GQNFL++ ++++KIA S+ EIG G G LTQ L Sbjct: 8 PSRTKEILAKHDVFAKKNYGQNFLIEPSVVEKIARSAIGEKKCVAFEIGPGIGALTQYLC 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122 A+KV+ E D++ +LKD ++ N EI+ D L +D EK+ + + Sbjct: 68 EY-AQKVVSFEIDERLPEVLKDTLQEYDN-FEIVLQDFLTIDLNAWVEKYRQEGYEVVVA 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T +LF A+ S+T++ QKEV +R A+ N+ Y LSV+T +R Sbjct: 126 ANLPYYITTPILFKIFEAEAN---ISSITVMMQKEVADRFYAKVNTKDYNALSVITQYRC 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + + + +VF P P V S V+ F E ++ + F +RRKT+ + Sbjct: 183 EVSPVMKVPKNVFMPKPNVDSAVLQFRFKQRNENIEEEVFFEMVKACFKQRRKTMLNNFG 242 Query: 243 -----RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + LL QA I+ R E++S+ +F + ++ + Sbjct: 243 EYLQDKAKAMALLEQANIDPKRRGESVSLAEFLVLYEVMRN 283 >gi|22122569|ref|NP_666186.1| dimethyladenosine transferase 1, mitochondrial [Mus musculus] gi|81878249|sp|Q8JZM0|TFB1M_MOUSE RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|21039484|gb|AAM33651.1|AF508971_1 transcription factor b1 [Mus musculus] gi|21410720|gb|AAH32930.1| Transcription factor B1, mitochondrial [Mus musculus] gi|148669697|gb|EDL01644.1| transcription factor B1, mitochondrial [Mus musculus] Length = 345 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ + + K + QNFLLDL + KI +GSL + V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S + Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISLKDGPFVYGRTKMTLTFQKEVAERLVATTGSKQH 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + +F I F P PKV V+H P + P I + ++K+ Q AF Sbjct: 194 SRLSIMAQYLCNVEHLFTIPGKAFVPKPKVDVGVVHLTPLIEPKIKQPFKLVEKVVQNAF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A I+ LR +LS+ F + ++ D Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCD 312 >gi|300362465|ref|ZP_07058641.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03] gi|300353456|gb|EFJ69328.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03] Length = 296 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 154/296 (52%), Gaps = 21/296 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + + + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+ Sbjct: 5 MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQPGDQVIEIGPGIGS 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK--- 111 LT+ LL GA KV+ E DQ ILK+ + NR +++ D LK +F K Sbjct: 64 LTEQLLLAGA-KVLAYEVDQDLPEILKNELPQKVAGEELSNRFKLVMKDVLKANFTKDSD 122 Query: 112 -FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 F +++ ++I+ANLPY I T ++FN I ++ + SLTL+ QKEV ER+ A+ + Sbjct: 123 GFLDLNKSVKIVANLPYYITTPIIFNLIKSNLA---FSSLTLMMQKEVAERLVAKPKTKE 179 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229 YG L++ R + ++ F P PKV S V+ P + + Sbjct: 180 YGPLTIAVQSRMNVKLAEEVKSTSFMPRPKVDSAVVVLTPLTEKPDIDDYSFFDHVVKMC 239 Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 F +RRKTL +LK L E +++ G++ +R E L++ F + ++L D Q Sbjct: 240 FAQRRKTLANNLKSLVKDRDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295 >gi|83749340|ref|ZP_00946337.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551] gi|83724018|gb|EAP71199.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551] Length = 281 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 117/265 (44%), Gaps = 11/265 (4%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL+D ++ I + ++EIG G G LT L+ + V Sbjct: 9 HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E D+ L+ ++L + DAL DF +RI+ NLPYNI + LLF Sbjct: 68 VELDRDLVARLQRRFG---DKLVVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + QKEV ER+ A S + RLSV+ R ++ D+ P F Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVERMVAVPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181 Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ IP + +L + AF +RRK LR +L L Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYALVDMRALGTVVTLAFSQRRKVLRNTLGSLREAIDFD 241 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 G + RAE + + DF + N L Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANAL 266 >gi|304388007|ref|ZP_07370178.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091] gi|304337955|gb|EFM04094.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091] gi|325127795|gb|EGC50703.1| dimethyladenosine transferase [Neisseria meningitidis N1568] Length = 259 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F NI +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|323490982|ref|ZP_08096176.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2] gi|323395338|gb|EGA88190.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2] Length = 292 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 92/294 (31%), Positives = 142/294 (48%), Gaps = 23/294 (7%) Query: 1 MTMNNKSHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MT + + ++T I++ Y + KK +GQNFL+D NIL+KI + IEIG G Sbjct: 1 MT-KDIATPIRTQQIMTKYNLKVKKSLGQNFLIDPNILRKIVGQANLTKKSAAIEIGPGI 59 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-- 116 G LT+ L A KV+ E DQ+ P+L D S + N + I+ D LK D + + Sbjct: 60 GALTEHLA-REAGKVLAFEIDQRLLPVLADTLSPYDN-ISIVHSDILKADVQAAIDSELA 117 Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I ++ANLPY + T ++ + ++ QKEV ERITA+ + YG L Sbjct: 118 GYDDIVVVANLPYYVTTPIIL---KLLLEKLPIRGMVVMLQKEVAERITAKPGTKAYGSL 174 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGK 232 S+ + T+A M + VF P P V S VI P + +T+ +F + Sbjct: 175 SIAIQYYTQAEMALTVPKSVFLPQPNVDSAVIRMTKREVPEVEVINEDFFFSVTRGSFVQ 234 Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 RRKT+ +L K+ L +A I+ R E L+I++F +++ L Sbjct: 235 RRKTILNNLQVAMPSGKEKKEFILKALEEAEIDPTRRGETLTIKEFGLLSDKLY 288 >gi|120437829|ref|YP_863515.1| dimethyladenosine transferase [Gramella forsetii KT0803] gi|117579979|emb|CAL68448.1| dimethyladenosine transferase [Gramella forsetii KT0803] Length = 281 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 134/274 (48%), Gaps = 9/274 (3%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 NK S + KK++GQ+FL D NI KIA++ V+EIG G G LT+ Sbjct: 9 NKPSSNHRNNEDQGVRAKKHLGQHFLTDENIAAKIADTLSYNGYEKVLEIGPGTGVLTKH 68 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL A +V VIE D + L+ R I + D LK D + F II N Sbjct: 69 LLEKDA-EVHVIEIDTESVEYLESHYLHLRGR--IHEKDFLKHDLGQIFGQEQ-FAIIGN 124 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 PYNI T+++F + P + + FQKEV +RI ++ + YG LSVLT +A Sbjct: 125 FPYNISTQIVFKVLQMRDQIPEFSGM---FQKEVAKRICEKEGNKTYGILSVLTQAFYEA 181 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 +F + P VF P PKV S V+ N + C + +I + +F +RRKTLR SLK Sbjct: 182 EYLFTVPPSVFNPPPKVDSGVLRLRRKENFSLDCNEKLFFRIVKTSFNQRRKTLRNSLKS 241 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + L + I LR E L + F +T + Sbjct: 242 LNLPDNLREDAI-FGLRPEQLGFQQFIELTQKIE 274 >gi|126662912|ref|ZP_01733911.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38] gi|126626291|gb|EAZ96980.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38] Length = 268 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 101/276 (36%), Positives = 141/276 (51%), Gaps = 13/276 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+ +K K+ KK++GQ+FL D +I K IA++ ++EIG G G LT Sbjct: 1 MNSTEKQIK----MEKVTAKKHLGQHFLKDESIAKDIADTLSLEGYDKILEIGPGMGVLT 56 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL + VIE D++ L + N II D LK D + FN P II Sbjct: 57 KYLLD-KPTETFVIEIDKESVEYLGVHYPKLEN--HIISKDFLKYDLNEVFN-KEPFAII 112 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 N PYNI T+++F + P + + FQKEV +RI +K S YG LSVLT Sbjct: 113 GNFPYNISTQIVFKTLEMRDQIPEFAGM---FQKEVAQRICEKKGSKVYGILSVLTQAFY 169 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSL 241 +A +F + P VF P PKV S V+ N +PC + ++ + AF +RRKTLR SL Sbjct: 170 EAEYLFTVPPEVFNPPPKVDSGVLRLRRKENYSLPCDEKMFFRVVKTAFQQRRKTLRNSL 229 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K + L I +LR E L++E F IT +T Sbjct: 230 KSFNFSDNLKLDTI-FDLRPEQLTVEQFIDITQKIT 264 >gi|121634495|ref|YP_974740.1| dimethyladenosine transferase [Neisseria meningitidis FAM18] gi|166221682|sp|A1KSW0|RSMA_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120866201|emb|CAM09941.1| putative dimethyladenosine transferase [Neisseria meningitidis FAM18] gi|316983672|gb|EFV62653.1| dimethyladenosine transferase [Neisseria meningitidis H44/76] gi|325131849|gb|EGC54549.1| dimethyladenosine transferase [Neisseria meningitidis M6190] gi|325133788|gb|EGC56444.1| dimethyladenosine transferase [Neisseria meningitidis M13399] gi|325137899|gb|EGC60474.1| dimethyladenosine transferase [Neisseria meningitidis ES14902] gi|325143915|gb|EGC66225.1| dimethyladenosine transferase [Neisseria meningitidis M01-240013] gi|325200617|gb|ADY96072.1| dimethyladenosine transferase [Neisseria meningitidis H44/76] Length = 259 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|78043122|ref|YP_361409.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans Z-2901] gi|119365012|sp|Q3A8X5|RSMA_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77995237|gb|ABB14136.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans Z-2901] Length = 291 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 145/285 (50%), Gaps = 21/285 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +LK IL+ + + +GQ+FL D IL KI E + V+EIG G G LT+ L Sbjct: 5 SPTTLKEILARHNLTLSHGLGQHFLTDFGILAKIVEKAEITKDDAVLEIGPGAGVLTR-L 63 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---------KFFNIS 116 L A+ V+ IE D++ P+L + + N + ++ DA +++F+ +F Sbjct: 64 LAQAAKYVVAIEIDKKLLPVLAETTGDLGNVV-VVNADAREINFDRVMAEQTGGEFGFEG 122 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P I+ANLPY + L+F S+TL+ QKEV ERITA+ S YG LSV Sbjct: 123 KPYLIVANLPYYATSPLIFKVFEE---GYKVSSMTLMMQKEVAERITAKPGSKIYGSLSV 179 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRK 235 + ++ ++ + VFFP P+V S V+ F N + +I + AF RRK Sbjct: 180 ACQYFSEPRIVLKVPRTVFFPPPEVESAVVRFTLKENSLTSEERLKFFQIVRAAFATRRK 239 Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 T+ + +LKR E +L + GI+ +LRAE + E F R++ Sbjct: 240 TIAKSLSGALNLKRNYVEEVLLKVGIKPDLRAEQIPPESFYRLSQ 284 >gi|15676595|ref|NP_273739.1| dimethyladenosine transferase [Neisseria meningitidis MC58] gi|27151605|sp|Q9K0B7|RSMA_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|7225925|gb|AAF41114.1| dimethyladenosine transferase [Neisseria meningitidis MC58] gi|325139924|gb|EGC62454.1| dimethyladenosine transferase [Neisseria meningitidis CU385] Length = 259 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|218767820|ref|YP_002342332.1| dimethyladenosine transferase [Neisseria meningitidis Z2491] gi|254804581|ref|YP_003082802.1| dimethyladenosine transferase [Neisseria meningitidis alpha14] gi|27151604|sp|Q9JVC2|RSMA_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121051828|emb|CAM08134.1| putative dimethyladenosine transferase [Neisseria meningitidis Z2491] gi|254668123|emb|CBA04707.1| dimethyladenosine transferase [Neisseria meningitidis alpha14] gi|319410070|emb|CBY90404.1| dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA dimethylase; high level kasugamycin resistance protein KsgA; kasugamycin dimethyltransferase) [Neisseria meningitidis WUE 2594] Length = 259 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|104773499|ref|YP_618479.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513494|ref|YP_812400.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|118600873|sp|Q1GBR1|RSMA_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122275736|sp|Q04C60|RSMA_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|103422580|emb|CAI97183.1| Dimethyladenosine transferase (16S rRNA dimethylase) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092809|gb|ABJ57962.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 296 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 152/297 (51%), Gaps = 25/297 (8%) Query: 3 MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N+ + ++T I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G Sbjct: 1 MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111 G+LT+ LL G KV E DQ IL + R ++I D LK DF Sbjct: 61 IGSLTEQLLLAGG-KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119 Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 FF++S P++++ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226 S YG LS+ + + ++ F P PKV S V+ P P + ++ Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + F +RRKTL +LK L E LL ++ R E L+I DF RI+ + + Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAE 293 >gi|171060583|ref|YP_001792932.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6] gi|226732592|sp|B1Y7L9|RSMA_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170778028|gb|ACB36167.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6] Length = 269 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 11/257 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D ++L +I + G ++EIG G G +T ++ +++ V+E Sbjct: 2 KHIPRKRFGQHFLADQSVLDRIVQLIDPQPGEALVEIGPGLGAMTDPVVERC-KRLTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136 D+ L+ L +I+ D LKVDF P+R+I NLPYNI + +LF+ Sbjct: 61 LDRDLAARLRKRPE-----LTVIESDVLKVDFTALAQAAGRPVRVIGNLPYNISSPILFH 115 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + QKEV +R+ + S YGRLSV+ WR + + D+ P F Sbjct: 116 LLEQVA---SVQDQHFMLQKEVVDRMASAPGSKDYGRLSVMLQWRYQIESLLDVPPESFD 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ +P P + L ++ AF +RRK LR +L R E H + Sbjct: 173 PPPRVDSAIVRMLPLAQPPAVDPKLLGELVTVAFSQRRKMLRNTLGRWL-EAREHGGAFD 231 Query: 257 TNLRAENLSIEDFCRIT 273 RAE + + +F +T Sbjct: 232 LTRRAEEVPVAEFVALT 248 >gi|254251454|ref|ZP_04944772.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158] gi|124894063|gb|EAY67943.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158] Length = 275 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 79/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIERVATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +R++ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDQPSLRVVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L G Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYERHELPDVDPALLGEVVTAAFSQRRKMLRNTLGDYRGT 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++S+ ++ I L + + Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGIAQALAATRSVG 275 >gi|227497769|ref|ZP_03927955.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434] gi|226832812|gb|EEH65195.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434] Length = 310 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 136/287 (47%), Gaps = 18/287 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF+ D +++I ++G +G TV+E+G G G+LT +L Sbjct: 18 PADVRALSQALGVRPTKTLGQNFVHDAGTVRRIVRAAGVRNGETVLEVGPGLGSLTLAIL 77 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISS----P 118 GA VI +E D L + RL ++ DAL +D ++ P Sbjct: 78 EAGA-SVIAVEIDPPLAQALPVTVAQRMPEAAGRLRVVGADALSIDGPAALGLADGDPLP 136 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 R++ANLPYN+ +L ++A P ES+T++ Q EV +R+ A S YG SV Sbjct: 137 TRLVANLPYNVAVPVLLTLLAA---LPSLESVTVMVQAEVADRLAAGPGSKVYGVPSVKA 193 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTL 237 W A I VF+P P V S ++ + P E++ + AF +RRKTL Sbjct: 194 AWYASARRTITIGRTVFWPVPNVDSALVELVRREPPSTRASREAVFAVVDAAFAQRRKTL 253 Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 RQ+L L G + AGI+ R E L + DF + L D Sbjct: 254 RQALAGLAGSPQAAEAAIRAAGIDPTRRGETLDVHDFAALAEALEDQ 300 >gi|119899174|ref|YP_934387.1| dimethyladenosine transferase [Azoarcus sp. BH72] gi|119671587|emb|CAL95500.1| dimethyladenosine transferase [Azoarcus sp. BH72] Length = 265 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 142/262 (54%), Gaps = 11/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D NI+++I ++ +G ++EIG G G +T L+ + V+E Sbjct: 8 GHRARKRFGQNFLSDPNIIRRIIDAIRPKEGDIMVEIGPGLGAMTTPLIERLGH-LNVVE 66 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L++ P +L I + DALK D F ++ SP+R++ NLPYNI T +LF+ Sbjct: 67 IDRDLIARLRET--WTPEQLTIHEGDALKFD---FGSLGSPLRVVGNLPYNISTPILFHL 121 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 T+ + +T + QKEV R+ A+ + YGRLSV+ +R + +FD+ P F P Sbjct: 122 ---STFADRVKDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMARVFDVPPGAFRP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S+++ P + L +I AFG+RRKTLR +LK GE G+ Sbjct: 179 APKVMSSIVRMAPLPPEELGARDEALLGQIVTAAFGQRRKTLRNTLKDFLGEADFAALGL 238 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + LR E LS+ +F I N + Sbjct: 239 DPGLRGERLSVAEFVAIANHVA 260 >gi|25027528|ref|NP_737582.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|259507064|ref|ZP_05749964.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|33516940|sp|Q8FQZ5|RSMA_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23492810|dbj|BAC17782.1| putative dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|259165342|gb|EEW49896.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] Length = 289 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 133/280 (47%), Gaps = 18/280 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNF+ D N +++I ++ V+E+G G G+LT L+ Sbjct: 14 EIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVTAADLTPEDHVVEVGPGLGSLTLALVEK 73 Query: 69 GARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A V +E D + L + ++L ++Q DALKV F + P ++AN Sbjct: 74 AA-SVTAVEIDPRLAAELPATFAWRAPGLADKLTVVQKDALKVQQSDF--TTQPTALVAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + ++ P + ++ Q EV +R+ A S YG SV + + Sbjct: 131 LPYNVSVPVLLHMLAE---FPSITKVLVMVQLEVADRLAAVPGSKIYGVPSVKASFYGEV 187 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL 241 + I HVF+P+P++ S ++ I P P + + AF +RRKTLR +L Sbjct: 188 SKAGTIGKHVFWPAPQIESGLVKIIRTHTPWPQDDATRAKVWPVIDAAFLQRRKTLRAAL 247 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L A I+ LR E L + D+ R+ ++ Sbjct: 248 SGHFGSASAAEEALRAADIDPQLRGERLDVADYVRLAGVI 287 >gi|269468227|gb|EEZ79917.1| dimethyladenosine transferase, rRNA methylation [uncultured SUP05 cluster bacterium] Length = 254 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 86/256 (33%), Positives = 133/256 (51%), Gaps = 13/256 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +K GQNFL D I+ +I + ++EIG G G +T LL ++ VIE Sbjct: 5 KHTARKRFGQNFLTDARIVDRIIATIAPKKNDNLLEIGPGKGAMTLPLLEEL-NQLHVIE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D +L+ + L I Q DALK D K +P+R++ NLPYNI + +LF+ Sbjct: 64 IDTDLIALLQSFGKE---NLIIHQGDALKFDVSKL---PAPLRVVGNLPYNISSPILFHL 117 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++ + + + + QKEV ER+ A + YGRLSV+ + M+F + P F P Sbjct: 118 LNNRE---YIQDMIFMLQKEVVERMVASNGNKTYGRLSVMIQAFFEVEMIFVVPPESFEP 174 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 +PKV S +++ P + + +KI + +F +RRKTLR LK L + Q I+ Sbjct: 175 APKVDSAIVYLKPLEKNLIDDITVFEKIVKASFAQRRKTLRNCLKSLLTQ---EQTSIDL 231 Query: 258 NLRAENLSIEDFCRIT 273 + RAE LS+ +F +T Sbjct: 232 SQRAEMLSVNEFITLT 247 >gi|296314706|ref|ZP_06864647.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768] gi|296838541|gb|EFH22479.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768] Length = 259 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVHPQADDIVIEIGPGLAAITEPLAK-KLNRLHVIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|311897999|dbj|BAJ30407.1| putative dimethyladenosine transferase [Kitasatospora setae KM-6054] Length = 294 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 17/278 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K GQNF++D N +++I ++G D V+E+G G G+LT LL Sbjct: 15 AADIRALAEAFGVKPTKQRGQNFVIDGNTVRRIVRAAGVTDEDAVVEVGPGLGSLTLALL 74 Query: 67 TLGARKVIVIEKDQQFFPILKDIS----SQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + AR V +E D L D + +++ DA++V +P ++ Sbjct: 75 EV-ARHVTAVEIDPVLARHLPDTVRGRMPAKADSFDLVLSDAMEVTE---LPGPAPTALV 130 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 131 ANLPYNVAVPVLLHMLE---HFPSIERTLVMVQSEVADRLAAKPGNKVYGVPSVKANWYA 187 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+P V S ++ + P + + AF +RRKTLR +L Sbjct: 188 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRDPPATTATRREVFAVVDAAFAQRRKTLRAAL 247 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AGI+ LR E L++E F I Sbjct: 248 AGWAGSPAAAEEALRGAGIDHTLRGEMLTVEQFAAIAE 285 >gi|325267670|ref|ZP_08134321.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394] gi|324980794|gb|EGC16455.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394] Length = 259 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L T R++ V E Sbjct: 5 HKARKRFGQNFLQDTRIITDIVNAVRPQPDDIVIEIGPGLAAITEPL-TRHLRQLHVCEI 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK+ ++L I + D L+ D F +I+ +I+ NLPYNI T LLF+ Sbjct: 64 DRDIIRFLKE--QPFADKLVIHEGDVLQFD---FGSIAGRKKIVGNLPYNISTPLLFHLA 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ AQ + YGRLSV+ + M+ ++ P F P+ Sbjct: 119 EVAD---EVVDMHFMLQKEVVERMVAQPKTNDYGRLSVMLQYFFDMEMLIEVPPESFDPA 175 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP N I + ++AF +RRKT+R +LK + + L GI Sbjct: 176 PKVDSAVVRMIPVPNRIGTAADFAHFSNLVRDAFHQRRKTIRNNLKGIADDEDLQAVGIL 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE ++ E + R++N L Sbjct: 236 PQQRAEEIAPELYVRLSNHL 255 >gi|332283296|ref|YP_004415207.1| dimethyladenosine transferase [Pusillimonas sp. T7-7] gi|330427249|gb|AEC18583.1| dimethyladenosine transferase [Pusillimonas sp. T7-7] Length = 261 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ+FL D ++ I V+EIG G LT LL + + V+E Sbjct: 3 HQARKRFGQHFLTDDGVVDAIVRGIDPRHDDAVVEIGPGLSALTGPLLNVL-DHLTVVEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ P RL +I+ DAL VDF S +RI+ NLPYNI + LLF+ + Sbjct: 62 DRDLAARLRQ--GHKPERLTVIEGDALTVDFSSL---GSGLRIVGNLPYNISSPLLFHLM 116 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ + Q+EV +R+ AQ +S YGRLSV+ R + +FD+ P F P Sbjct: 117 ASAEH---VRDQHFMLQREVIDRMVAQPSSGDYGRLSVMLQSRYRMHKLFDVPPEAFDPP 173 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S V+ P P ++ +++ AF +RRK LR+ L GI Sbjct: 174 PRVVSAVVRMAPLPDTRQKPKSGKAFEQVVARAFAQRRKMLRRGLADWAPSIDWDALGIP 233 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE LS+ F +T+ L D Sbjct: 234 ETARAEELSVSQFMALTDHLLDK 256 >gi|297572123|ref|YP_003697897.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM 20595] gi|296932470|gb|ADH93278.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM 20595] Length = 301 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 28/295 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + I P K +GQNF+ D +++I +G G V+E+G G G+LT +L G Sbjct: 14 IRELAATFGIRPTKTLGQNFVHDAGTVRRIVRDAGVQAGDHVVEVGPGLGSLTLAILETG 73 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISS-------- 117 A + IE D L ++ + R + DA+++ + Sbjct: 74 A-VLSAIEIDPPLADALPGTIAEVQPESSERFAVTNRDAMEIHSVADLAVPRVVGEGGDS 132 Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P ++ANLPYN+ +L + + P E++T++ Q EV +R+ A+ S YG Sbjct: 133 AEFTPKHLVANLPYNVAVPVLLTLLES---LPTLETVTVMVQLEVADRLAAEPGSKVYGV 189 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 SV W IS +VF+P P V S ++H H P E++ + AF +R Sbjct: 190 PSVKANWYADVWRGAKISRNVFWPVPNVDSALVHMRRHPEPESVDREAVFGVVDAAFAQR 249 Query: 234 RKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 RKTLR +L G E +L AG++ +LR E L+IE+F I + +++A Sbjct: 250 RKTLRAALGAWAGSPARAEEILRAAGVDPSLRGERLTIENFIAIAR---NRENVA 301 >gi|254673623|emb|CBA09163.1| dimethyladenosine transferase [Neisseria meningitidis alpha275] Length = 259 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|326563671|gb|EGE13923.1| dimethyladenosine transferase [Moraxella catarrhalis 103P14B1] gi|326565249|gb|EGE15434.1| dimethyladenosine transferase [Moraxella catarrhalis 12P80B1] gi|326573279|gb|EGE23247.1| dimethyladenosine transferase [Moraxella catarrhalis 101P30B1] gi|326575822|gb|EGE25745.1| dimethyladenosine transferase [Moraxella catarrhalis CO72] Length = 284 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 138/276 (50%), Gaps = 14/276 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ +I + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + + GI + R E L + +F + +++ N+ + Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNRQSS 283 >gi|311104078|ref|YP_003976931.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8] gi|310758767|gb|ADP14216.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8] Length = 263 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 11/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQNFL D ++++ I + TV+EIG G LT+ LL + +E Sbjct: 3 QHQARKRFGQNFLTDESVVESIVRAVSPARDDTVVEIGPGLSALTRPLLERL-DHLTAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ +RL +++ DAL VDF +F +R++ NLPYNI + LLF+ Sbjct: 62 IDRDLAARLRKQFDA--SRLTVVEADALTVDFSQF---GPALRVVGNLPYNISSPLLFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + TW + Q+EV +R+ AQ S + RLSV+ R + +FD+ P F P Sbjct: 117 M---TWAGHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDP 173 Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ +P P + + + AF +RRK LR+ L + I Sbjct: 174 PPKVVSAIVRMVPLPADRLRPVSERAFETVVARAFSQRRKMLRRVLADWAAQVPWEALDI 233 Query: 256 ETNLRAENLSIEDFCRITNIL 276 RAE++S++ + R+ + L Sbjct: 234 APTARAEDISVDRYIRLADAL 254 >gi|254670514|emb|CBA06283.1| dimethyladenosine transferase [Neisseria meningitidis alpha153] Length = 259 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F NI +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE++ E + ++N L Sbjct: 235 PQDRAEHIVPEKYVALSNYLA 255 >gi|261400380|ref|ZP_05986505.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970] gi|269209816|gb|EEZ76271.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970] Length = 259 Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 126/263 (47%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L + V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNCLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L + L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE++ E + ++N L D Sbjct: 235 PQDRAEHIEPEKYVALSNYLADK 257 >gi|326570246|gb|EGE20291.1| dimethyladenosine transferase [Moraxella catarrhalis BC8] Length = 284 Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ +I + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSYSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + GI + R E L + +F + +++ N+ Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280 >gi|163753725|ref|ZP_02160848.1| dimethyladenosine transferase [Kordia algicida OT-1] gi|161325939|gb|EDP97265.1| dimethyladenosine transferase [Kordia algicida OT-1] Length = 260 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 94/257 (36%), Positives = 135/257 (52%), Gaps = 9/257 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK++GQ+FL D + ++IA++ V+EIG G G LT+ LL V E Sbjct: 4 KVRAKKHLGQHFLKDEEVAQRIADTLTLNHYKNVLEIGPGMGVLTKYLLEKPV-TTYVCE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + LK Q N+ I+++D LK D +K F P II N PYNI T+++F Sbjct: 63 IDTESVAYLKAHYLQLSNK--ILEEDFLKYDLKKTFK-DEPFAIIGNFPYNISTQIVFKT 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + + FQKEV +RI A + YG LSVLT A +F + P+VF P Sbjct: 120 LEMRDQIPEFSGM---FQKEVAQRICAPHGNKTYGILSVLTQAFYDAEYLFTVPPNVFKP 176 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ I N +PC + ++ + AF +RRKTLR SLK + L + I Sbjct: 177 PPKVDSGVMRLIRKENYTLPCEEKLFFRVVKTAFQQRRKTLRNSLKTFNLSDNLKEDTI- 235 Query: 257 TNLRAENLSIEDFCRIT 273 LR E +S++ F +T Sbjct: 236 FGLRPEQVSVQGFVDLT 252 >gi|294786234|ref|ZP_06751488.1| dimethyladenosine transferase [Parascardovia denticolens F0305] gi|315225768|ref|ZP_07867556.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105] gi|294485067|gb|EFG32701.1| dimethyladenosine transferase [Parascardovia denticolens F0305] gi|315119900|gb|EFT83032.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105] Length = 291 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 142/280 (50%), Gaps = 15/280 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +++IA VIE+G G G+LT LL Sbjct: 14 AADIRRIAASTGINPTKRFGQNFVVDPGTVRRIARLGDLGPDSRVIEVGPGLGSLTLALL 73 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKV---DFEKFFNISSP- 118 GA +V+ +E D + +L + Q +R +I++DAL++ E+ F P Sbjct: 74 ETGA-QVLAVEIDPRLADLLPSTVRAQMPQAMSRFHLIREDALQLGLDQVEEIFGSPLPQ 132 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 + +++NLPYN+ T ++ + P S T++ QKEV +R+TAQ S YG SV Sbjct: 133 LTLMSNLPYNVATPIILTLLER---FPSLASFTVMVQKEVADRLTAQPGSKIYGVPSVKL 189 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRK 235 W +A + VF+P+P V S ++ F + P E + AF +RRK Sbjct: 190 AWYGQAKPAGIVGASVFWPAPHVDSALVAFTRYDQGQGPRTDLRERTFTLVDAAFSQRRK 249 Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 TL +LK++ +AGI+ R E L++E+F R+ + Sbjct: 250 TLHAALKKMVPTAAFEKAGIDPTRRGETLTMEEFTRLASA 289 >gi|116628883|ref|YP_814055.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323] gi|116094465|gb|ABJ59617.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323] Length = 298 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 158/301 (52%), Gaps = 25/301 (8%) Query: 1 MTMNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 M M+N + ++T I++ Y + KK +GQNFL+DL +K I E++ G VIEIG Sbjct: 1 MKMSNSMPIASPVRTQAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDF 109 G G+LT+ LL GA KV+ E DQ ILK+ + +R +++ D LK +F Sbjct: 61 PGIGSLTEQLLLAGA-KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANF 119 Query: 110 EK----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 K F +++ P++I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A Sbjct: 120 TKDSDGFLDLNKPVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAI 176 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK 224 + YG L++ R + ++ F P PKV S V+ P P Sbjct: 177 PKTKEYGPLTIAVQSRMNVELAEEVKSTSFMPRPKVDSAVVVLTPLTEKPNIDDYSFFDH 236 Query: 225 ITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + F +RRKTL +LK L E +++ G++ +R E L++ F + ++L D Sbjct: 237 VVKMCFAQRRKTLANNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQ 296 Query: 280 Q 280 Q Sbjct: 297 Q 297 >gi|312797254|ref|YP_004030176.1| Dimethyladenosine transferase [Burkholderia rhizoxinica HKI 454] gi|312169029|emb|CBW76032.1| Dimethyladenosine transferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 286 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 12/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +K GQNFL+D ++ I E+ ++EIG G G LT LL + + Sbjct: 5 QHQGHFARKRFGQNFLVDTGVIDAIVEAIRPQPADRLVEIGPGLGALTAPLLER-VQTLH 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGT 131 +E D+ L+ +RL + DAL DF + + +R++ NLPYNI + Sbjct: 64 AVELDRDLIARLQQRFG---SRLVLHAGDALAFDFASLADPAHIGASLRVVGNLPYNISS 120 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 LLF+ ++ + Q EV ER+ A+ S Y RL+V+ +R + ++ Sbjct: 121 PLLFHL---ASFADEVIDQHFMLQDEVVERMVAEPGSKDYSRLTVMLQYRYAIDKLIEVP 177 Query: 192 PHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P+PKVTS V+ IP + P + L ++ AF +RRK LR +L G Sbjct: 178 PESFEPAPKVTSAVVRMIPRAAGDVPPVDIVRLGEVVTAAFSQRRKMLRNTLAAYRGRVD 237 Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274 G + RAE++ + ++ + Sbjct: 238 FDALGFDLARRAEDVPVLEYVALAQ 262 >gi|297566999|ref|YP_003685971.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946] gi|296851448|gb|ADH64463.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946] Length = 276 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 140/276 (50%), Gaps = 18/276 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S +++ +L Y + K GQNFL++ L++I + G G V E+G G G LT+ L Sbjct: 12 SSRAVRELLERYGLRADKRFGQNFLVEAGYLQRIVAAVGFKPGERVYEVGPGLGTLTRAL 71 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 GA KV +E D++ P+ + + P +E+I DAL+ D+ NL Sbjct: 72 AEAGA-KVTAVEMDRRLEPVHAETLAHLP--VEVIWGDALEFDWRSI---PPGSLFAGNL 125 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNI T L+ + + + + +L QKEV R+ A +P YG LS+ ++A Sbjct: 126 PYNIATPLITKLLLSRR----FRCIVVLVQKEVALRMVAAPGTPEYGVLSLRIQHHSQAR 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244 +FD+ P VF P PKVTS+++ P+ NP L ++ + AF +RRKTL +LK Sbjct: 182 RLFDLPPGVFLPPPKVTSSLVRLEPNANP---DDPELFRLIEAAFAQRRKTLSNALKAAE 238 Query: 245 ----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L Q G+ +R E LS+E F + ++L Sbjct: 239 YPPQAVTAALVQMGLPPQIRGEALSLEQFRTLHSLL 274 >gi|298369212|ref|ZP_06980530.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283215|gb|EFI24702.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str. F0314] Length = 259 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 126/260 (48%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE Sbjct: 4 HKARKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVGRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVEMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK G+ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKEFAGDEDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254 >gi|261363715|ref|ZP_05976598.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996] gi|288568281|gb|EFC89841.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996] Length = 259 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 126/260 (48%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L + VIE Sbjct: 4 HKARKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNSLHVIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G+ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254 >gi|240112378|ref|ZP_04726868.1| dimethyladenosine transferase [Neisseria gonorrhoeae MS11] gi|254493179|ref|ZP_05106350.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae 1291] gi|268598439|ref|ZP_06132606.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae MS11] gi|212278037|gb|ACJ23033.1| KsgA [Neisseria gonorrhoeae] gi|226512219|gb|EEH61564.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae 1291] gi|268582570|gb|EEZ47246.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae MS11] Length = 259 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 128/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F NI +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|261392930|emb|CAX50515.1| dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA dimethylase; high level kasugamycin resistance protein KsgA; kasugamycin dimethyltransferase) [Neisseria meningitidis 8013] Length = 259 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|296113252|ref|YP_003627190.1| dimethyladenosine transferase [Moraxella catarrhalis RH4] gi|295920946|gb|ADG61297.1| dimethyladenosine transferase [Moraxella catarrhalis RH4] gi|326562888|gb|EGE13175.1| dimethyladenosine transferase [Moraxella catarrhalis 46P47B1] gi|326576903|gb|EGE26809.1| dimethyladenosine transferase [Moraxella catarrhalis O35E] Length = 284 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ +I + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + GI + R E L + +F + +++ N+ Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280 >gi|313668821|ref|YP_004049105.1| dimethyladenosine transferase [Neisseria lactamica ST-640] gi|313006283|emb|CBN87746.1| putative dimethyladenosine transferase [Neisseria lactamica 020-06] Length = 259 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 127/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L + V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNCLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI IP + I E K+ + AF +RRKT+R +LK L + L GI Sbjct: 175 PKVDSAVIRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYIALSNYLADK 257 >gi|258510150|ref|YP_003183584.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476876|gb|ACV57195.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 284 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 17/281 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + +K +L + +I KK GQNFL+D +L I + V+E+G G G LT L Sbjct: 5 SAREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVAPDARTVVLEVGPGLGALTAAL 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121 A++V+ IEKD+ P+L ++ + H N E++ +D LKVD + + Sbjct: 65 AER-AKRVVAIEKDESLRPVLDEVLAPHGNA-EVVYEDCLKVDLRALLAPRLDEGDRLVF 122 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ANLPY + T +LF + +D ++ Q+EV +R+ A+ YG LS+ +R Sbjct: 123 AANLPYYVTTPILFQVLESDVP---VSRAVVMVQREVADRMVARPGGKDYGVLSIGVQYR 179 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQ 239 + +F++ P F P P V S V+ P +L ++ + AFG RRKTL Sbjct: 180 GEVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPAVRAADEAALFRVVRAAFGTRRKTLEN 239 Query: 240 SLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 +L + + AGI+ RAE LS+ DF R+ + Sbjct: 240 ALAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLAD 280 >gi|134296900|ref|YP_001120635.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4] gi|166221657|sp|A4JHP7|RSMA_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|134140057|gb|ABO55800.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4] Length = 276 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G + G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIGPVRGQRMVEIGPGLGALTEPLIARVATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFGSLAAPGHAPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ P + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGELVTAAFSQRRKMLRNTLGAYRDT 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++S+ ++ + L +++A Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALARTRNVA 275 >gi|225075613|ref|ZP_03718812.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens NRL30031/H210] gi|224953035|gb|EEG34244.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens NRL30031/H210] Length = 257 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + +IEIG G +T+ L ++ V E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIMIEIGPGLAAITEPLAK-KLNRLHVCEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I +I+ NLPYNI T LLF Sbjct: 63 DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P+ Sbjct: 118 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVELSNYLA 255 >gi|86140929|ref|ZP_01059488.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217] gi|85832871|gb|EAQ51320.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217] Length = 285 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 14/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D +I KKIAE+ V+EIG G G LT+ LL + V ++ Sbjct: 18 VKAKKHLGQHFLKDESIAKKIAETLSYDGYSEVLEIGPGTGVLTKYLLRKDSN-VTAMDL 76 Query: 79 DQQFFPILKDISS-QHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 D + L +HP L +++ D LK D K F + I N PYNI T+ Sbjct: 77 DSESIVYLNHSFPLEHPQLMEGCTLNVVEADFLKFDLSKLFGDQA-FAITGNFPYNISTQ 135 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F + P + + FQKEV +RI ++ S YG LSVL A +F + P Sbjct: 136 IVFKMLEWRDQVPEFSGM---FQKEVAQRICEKEGSKAYGILSVLAQAFYDAEYLFTVPP 192 Query: 193 HVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S V+ N + C ++L K+ + AF +RRKTLR SLK+L + Sbjct: 193 GVFNPPPKVDSGVLRLTRKPNYKDLACDPDALYKVVKMAFQQRRKTLRNSLKQLELSDAF 252 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQ 280 ++ I N+R E LS+E F ++T +T+++ Sbjct: 253 RESEI-FNMRPEQLSVEAFIKLTQDITNDK 281 >gi|238897970|ref|YP_002923650.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494251|sp|C4K4K9|RSMA_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|229465728|gb|ACQ67502.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 267 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 95/265 (35%), Positives = 137/265 (51%), Gaps = 10/265 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 KK GQNFL D ++ +I S T+IEIG G G LT L K++VI Sbjct: 7 QGHFAKKRFGQNFLTDEFVIDQIISSIHPSPEQTLIEIGPGLGALTLPLADQ-MDKILVI 65 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLF 135 E D+ L Q ++L + Q D + V+F + P+RI+ NLPYNI T LLF Sbjct: 66 ELDRHLADRLNQH-PQLKDKLILYQQDVMTVNFSELSATFKQPLRILGNLPYNISTPLLF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + Q+EV R+ A N+ YGRLSV+ + K + ++ P F Sbjct: 125 HLFKD---IHRIDDMHFMLQREVVNRLLAAPNTKAYGRLSVMVQYHCKVIPILEVPPDAF 181 Query: 196 FPSPKVTSTVIHFIPHL---NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S +I +P+ +P P +E L +T++AF +RRKTL SL L + L Sbjct: 182 TPIPKVYSAMIRLLPYRSLSHPYPVTDIERLNLVTRQAFNQRRKTLHNSLGALFTDQELA 241 Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276 + GI LRAEN+S+E +C + N L Sbjct: 242 ETGICPKLRAENVSVEQYCLLANRL 266 >gi|332969263|gb|EGK08291.1| dimethyladenosine transferase [Kingella kingae ATCC 23330] Length = 262 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + + VIEIG G +T+ L T ++ V E Sbjct: 9 HKARKRFGQNFLQDTRIISDIVNAVRPVPDDIVIEIGPGLAAITEPL-TRKLNQLHVCEI 67 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK N+L I D L+ D F +I+ +I+ NLPYNI T LLF Sbjct: 68 DRDIITFLKK--QSFANKLVIHDGDVLQFD---FRSIAGRKKIVGNLPYNISTPLLFRLA 122 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A + YGRLSV+ + M+ ++ P F P+ Sbjct: 123 EIAD---EVIDMHFMLQKEVVERMVATPKTNDYGRLSVMLQYFFDMEMLIEVPPESFNPA 179 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP N I + + ++AF +RRKT+R +LK + ++ L GI Sbjct: 180 PKVDSAVVRMIPVENRIGKAENFKHFSDLVRDAFHQRRKTIRNNLKEIASDDDLQAVGIL 239 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE ++ + + +++N L + Sbjct: 240 PQQRAEEIAPDTYVKLSNYLVNK 262 >gi|293603517|ref|ZP_06685938.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553] gi|292817953|gb|EFF77013.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553] Length = 261 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 133/265 (50%), Gaps = 11/265 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQNFL D ++++ I + V+EIG G LT+ LL + +E Sbjct: 3 QHQARKRFGQNFLTDESVVESIVRAVAPARDDAVVEIGPGLSALTRPLLERL-DHLTAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ +RL +++ DAL VDF +F S +R++ NLPYNI + LLF+ Sbjct: 62 IDRDLAARLRKQFEA--SRLTVVEADALTVDFSQF---GSALRVVGNLPYNISSPLLFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + TW + Q+EV +R+ AQ S + RLSV+ R + +FD+ P F P Sbjct: 117 M---TWADHIRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDP 173 Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S ++ +P P + + + + AF +RRK LR+ L + I Sbjct: 174 PPKVVSAIVRMVPLPADRLQPVSVRAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDI 233 Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280 RAE++S++ + R+++ L + + Sbjct: 234 APTARAEDISVDRYIRLSDALVEAK 258 >gi|325125130|gb|ADY84460.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 296 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 25/297 (8%) Query: 3 MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N+ + ++T I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G Sbjct: 1 MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVRGIVRAAGIEPGDQVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111 G+LT+ LL G KV E DQ IL + R ++I D LK DF Sbjct: 61 IGSLTEQLLLAGG-KVTAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119 Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 FF++S P++++ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLE---YSLDFTSLTLMMQKEVAERLAAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226 S YG LS+ + + ++ F P PKV S V+ P P + ++ Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + F +RRKTL +LK L E LL + R E L+I DF RI+ + + Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLAPRQRPEQLAISDFIRISQAIAE 293 >gi|194097992|ref|YP_002001040.1| dimethyladenosine transferase [Neisseria gonorrhoeae NCCP11945] gi|239998459|ref|ZP_04718383.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02] gi|240013584|ref|ZP_04720497.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI18] gi|240080164|ref|ZP_04724707.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19] gi|240115118|ref|ZP_04729180.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID18] gi|240117401|ref|ZP_04731463.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID1] gi|240120653|ref|ZP_04733615.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID24-1] gi|240122958|ref|ZP_04735914.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID332] gi|240125209|ref|ZP_04738095.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-92-679] gi|240127664|ref|ZP_04740325.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-93-1035] gi|260441065|ref|ZP_05794881.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2] gi|268594320|ref|ZP_06128487.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02] gi|268596315|ref|ZP_06130482.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19] gi|268600793|ref|ZP_06134960.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID18] gi|268603098|ref|ZP_06137265.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID1] gi|268681579|ref|ZP_06148441.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID332] gi|268683807|ref|ZP_06150669.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268686049|ref|ZP_06152911.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291044398|ref|ZP_06570107.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2] gi|226732603|sp|B4RJV5|RSMA_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|193933282|gb|ACF29106.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae NCCP11945] gi|212278025|gb|ACJ23027.1| KsgA [Neisseria gonorrhoeae] gi|212278027|gb|ACJ23028.1| KsgA [Neisseria gonorrhoeae] gi|212278029|gb|ACJ23029.1| KsgA [Neisseria gonorrhoeae] gi|212278031|gb|ACJ23030.1| KsgA [Neisseria gonorrhoeae] gi|212278033|gb|ACJ23031.1| KsgA [Neisseria gonorrhoeae] gi|212278035|gb|ACJ23032.1| KsgA [Neisseria gonorrhoeae] gi|212278039|gb|ACJ23034.1| KsgA [Neisseria gonorrhoeae] gi|212278041|gb|ACJ23035.1| KsgA [Neisseria gonorrhoeae] gi|212278043|gb|ACJ23036.1| KsgA [Neisseria gonorrhoeae] gi|212278045|gb|ACJ23037.1| KsgA [Neisseria gonorrhoeae] gi|212278047|gb|ACJ23038.1| KsgA [Neisseria gonorrhoeae] gi|212278049|gb|ACJ23039.1| KsgA [Neisseria gonorrhoeae] gi|212278051|gb|ACJ23040.1| KsgA [Neisseria gonorrhoeae] gi|212278053|gb|ACJ23041.1| KsgA [Neisseria gonorrhoeae] gi|212278055|gb|ACJ23042.1| KsgA [Neisseria gonorrhoeae] gi|212278057|gb|ACJ23043.1| KsgA [Neisseria gonorrhoeae] gi|212278059|gb|ACJ23044.1| KsgA [Neisseria gonorrhoeae] gi|212278061|gb|ACJ23045.1| KsgA [Neisseria gonorrhoeae] gi|212278063|gb|ACJ23046.1| KsgA [Neisseria gonorrhoeae] gi|212278065|gb|ACJ23047.1| KsgA [Neisseria gonorrhoeae] gi|212278067|gb|ACJ23048.1| KsgA [Neisseria gonorrhoeae] gi|268547709|gb|EEZ43127.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02] gi|268550103|gb|EEZ45122.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19] gi|268584924|gb|EEZ49600.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID18] gi|268587229|gb|EEZ51905.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID1] gi|268621863|gb|EEZ54263.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae PID332] gi|268624091|gb|EEZ56491.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268626333|gb|EEZ58733.1| dimethyladenosine transferase dimethyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291011292|gb|EFE03288.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2] gi|317163741|gb|ADV07282.1| dimethyladenosine transferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 259 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 128/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|297621735|ref|YP_003709872.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044] gi|297377036|gb|ADI38866.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044] Length = 283 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 96/284 (33%), Positives = 137/284 (48%), Gaps = 18/284 (6%) Query: 1 MTMN----NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56 MT N + L+ L I PKK + QNFL+D NI+ KI + V+EIG Sbjct: 5 MTSNPLRLSNPSQLRQYLEILGISPKKSLSQNFLIDGNIIDKIISLAEINAQDQVLEIGP 64 Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 GPG LT L GAR V+ +EKD+ L++ + +I +D LKVD EK +S Sbjct: 65 GPGALTDALHQHGAR-VLAVEKDRILAKALQER----GGDIRVICEDVLKVDLEK--ELS 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +IANLPYNI + +L + + ++ + ++ Q EV ER+TA + YG L+V Sbjct: 118 ERATVIANLPYNITSPILTSLL---PKTHVFKRIVVMVQLEVAERLTASPGNKTYGSLTV 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 + + F +S FFP P V S V+ F P E+ ++ + AFG+RRK Sbjct: 175 FSNLFSTPQWGFKVSRRCFFPEPNVDSAVVRFDLSPPPKEVEDEAFFQLIRTAFGQRRKM 234 Query: 237 LRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L+ SLK+L L G + R E LS F L Sbjct: 235 LKSSLKKLYPSSSVMQALAGIGFQETARPEELSSNQFVEFYRHL 278 >gi|163855067|ref|YP_001629365.1| dimethyladenosine transferase [Bordetella petrii DSM 12804] gi|226729759|sp|A9I5F2|RSMA_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|163258795|emb|CAP41094.1| dimethyladenosine transferase [Bordetella petrii] Length = 262 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 11/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQ+FL D ++++ I + G V+EIG G LTQ LL G + V+E Sbjct: 3 RHQARKRFGQHFLTDDSVVEAIVRAIAPARGDRVVEIGPGLSALTQPLL-RGLDHLTVVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L++ + P RL +I+ DAL VD F ++ +R++ NLPYNI + LLF+ Sbjct: 62 IDRDLAARLRN--AHAPGRLTVIEADALTVD---FASLGERLRVVGNLPYNISSPLLFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 ++A + Q+EV +R+ A S YGRLSV+ R + +FD+ P F P Sbjct: 117 MAAAD---TVRDQHFMLQREVIDRMVAAPGSADYGRLSVMLQSRYRMDKLFDVPPEAFDP 173 Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S V+ +P P +L+ + AF +RRK LR+ L I Sbjct: 174 PPRVVSAVVRMVPLPADRLRPASEAALQAVVARAFAQRRKMLRRGLGDWAALVPWDALDI 233 Query: 256 ETNLRAENLSIEDFCRITNIL 276 RAE +S+E F R+T+ L Sbjct: 234 APTARAEEISVEKFIRLTDAL 254 >gi|309378797|emb|CBX22623.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 259 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 126/261 (48%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L + V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNCLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L + L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|255068286|ref|ZP_05320141.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256] gi|255047478|gb|EET42942.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256] Length = 259 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 128/260 (49%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE Sbjct: 4 HKARKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G+ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254 >gi|90416846|ref|ZP_01224775.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2207] gi|90331193|gb|EAS46437.1| dimethyladenosine transferase [marine gamma proteobacterium HTCC2207] Length = 266 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 8/264 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQNFL+D +I+ +I + G +IEIG G +T+ L+ + V+E Sbjct: 4 QHQARKRFGQNFLVDQHIIGQIVAAIGPSADDNLIEIGPGTAAITEHLIQRCP-TMKVVE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + + +P+ I DALK DF +F + +R++ NLPYNI T +LF+ Sbjct: 63 LDRDLVGFLTEKFADYPD-FSIYSGDALKTDFAQFHD-GRQLRLVGNLPYNISTPILFHL 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + T + + + Q+EV +R++A S YGRLS++ + + + + P F P Sbjct: 121 LKNRT---LIKDMHFMLQREVVDRLSAAPGSKTYGRLSIMVQYHCRVMPLIPVPPSAFRP 177 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S ++ PH E L +I AF +RRKTLR ++ + +A + Sbjct: 178 APKVQSAIVRLKPHSTKPCLAENEELLSQIVSLAFQQRRKTLRNGIRAYAEHLVGVEAVV 237 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 + + RAE+LS+ DF ++N + Sbjct: 238 DLSRRAEDLSVADFVALSNYINQR 261 >gi|114569772|ref|YP_756452.1| dimethyladenosine transferase [Maricaulis maris MCS10] gi|122316226|sp|Q0AQC3|RSMA_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|114340234|gb|ABI65514.1| dimethyladenosine transferase [Maricaulis maris MCS10] Length = 289 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 156/282 (55%), Gaps = 10/282 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ ++ L+ +++ + + KK GQ+FLLDLN+ KIA +G + IE+G GPG Sbjct: 1 MSL-DQLPPLRDVIASHDLGAKKSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGG 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L GA ++ +E D +F L +I+ RL + Q DAL+VD Sbjct: 60 LTRAILAEGAASLLAVEMDSRFLGALDEINVASGGRLTVEQGDALEVDETALLTGPGDKV 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I++NLPYN+GT+LL W+ A+ P +W L+FQ+EV +R+ AQ YGRL+V++ Sbjct: 120 ILSNLPYNVGTQLLIKWLQAE--PIWWRRAVLMFQREVADRVVAQPGDKAYGRLAVISQS 177 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 R +A + I F P PKV S V+ P + +L++IT AFG+RRKTLR+ Sbjct: 178 RCQAHLALKIPARAFTPPPKVESAVVVLDPLPEAQQFKDVVALERITASAFGQRRKTLRR 237 Query: 240 SLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNI 275 SL + G + LL +AG+ RAE + I F + Sbjct: 238 SLAQAAGQGGTSADALLEEAGLNAGDRAEVIDITGFQSLARA 279 >gi|122136705|sp|Q2PG46|TFB1M_MACFA RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|84578981|dbj|BAE72924.1| hypothetical protein [Macaca fascicularis] Length = 345 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A I+ LR LSI F + + D Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCD 312 >gi|291457904|ref|ZP_06597294.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419448|gb|EFE93167.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str. F0262] Length = 291 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 16/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ +K GQNFL+D ++L+ I +S V+EIG G G Sbjct: 1 MNKLIRPGETLRVIKENNFQFQKRFGQNFLIDESVLRDILAASEITREDCVLEIGPGIGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 LTQ L ARKVI +E D++ PIL++ S + N L +IQ DAL++D K N Sbjct: 61 LTQALCES-ARKVIAVELDKKLIPILEENLSAYDN-LRLIQGDALRLDLTKLIGEENDGH 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 PI++ ANLPY I + +L + + + S+T++ Q+EV +R+ A + YG LS+ Sbjct: 119 PIKVAANLPYYITSPILMSLLESRAP---IRSITIMVQREVADRMRALPGTKSYGALSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + K ++ ++ F P P V S V+ P L ++ + AF RRK Sbjct: 176 VQYYAKIDLIRTVASSCFLPRPNVDSAVVKLTLRSETPENPEEKAFLFRLIRSAFATRRK 235 Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL +L + E L + G+ N+R E LS+ F ++ +L Sbjct: 236 TLANALSGGLSLPKERTEEALRELGLSENIRGEALSLSQFSALSALLR 283 >gi|238852850|ref|ZP_04643255.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4] gi|282852550|ref|ZP_06261892.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1] gi|311111301|ref|ZP_07712698.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22] gi|238834544|gb|EEQ26776.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4] gi|282556292|gb|EFB61912.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1] gi|311066455|gb|EFQ46795.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22] Length = 296 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 155/296 (52%), Gaps = 21/296 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + + + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+ Sbjct: 5 MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGS 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK--- 111 LT+ LL GA KV+ E DQ ILK+ + +R +++ D LK +F K Sbjct: 64 LTEQLLLAGA-KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANFTKDSD 122 Query: 112 -FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 F +++ P++I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A + Sbjct: 123 GFLDLNKPVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAIPKTKE 179 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEA 229 YG L++ R + ++ F P PKV S V+ P P + + Sbjct: 180 YGPLTIAVQSRMNVELAEEVKSTSFMPRPKVDSAVVVLTPLTEKPNIDDYSFFDHVVKMC 239 Query: 230 FGKRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 F +RRKTL +LK L E +++ G++ +R E L++ F + ++L D Q Sbjct: 240 FAQRRKTLANNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295 >gi|326692423|ref|ZP_08229428.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Leuconostoc argentinum KCTC 3773] Length = 295 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 20/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + IL+ Y + KK GQNFL DL++L I E++ VIEIG G G LT Sbjct: 7 IANPTRT-QAILTQYGLHAKKKFGQNFLTDLSVLHGIVETAEITADDYVIEIGPGIGALT 65 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118 + L A++V+ E D Q +L + + N + +++ D LKVD + F + + Sbjct: 66 EQLARR-AKRVLAFEIDPQMVAVLAETLQPYDN-VTVVEQDILKVDLAQMIATEFGVGAR 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T +L + ++ W+++ ++ Q+EV +R+ A + YG L++ Sbjct: 124 VKVVANLPYYITTPILMQLLRSNIA---WDNIVVMMQREVADRLNAAVGTKAYGVLTLTV 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237 + +AT+ ++ F PSP V S V+ PH I E L + + +F RRK+L Sbjct: 181 AYFAQATLAINVPATSFNPSPNVDSAVVKLTPHTPEIVVDQPERLFGVIKRSFSHRRKSL 240 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ + G++ L I ++RAE L + F ++ L Sbjct: 241 WNNMIQTYGKDAETKEKITAALAATDIAPSIRAERLDLTQFTQLYLALR 289 >gi|161869639|ref|YP_001598806.1| dimethyladenosine transferase [Neisseria meningitidis 053442] gi|189028812|sp|A9M352|RSMA_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|161595192|gb|ABX72852.1| dimethyladenosine transferase [Neisseria meningitidis 053442] Length = 259 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV +R+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|332519203|ref|ZP_08395670.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4] gi|332045051|gb|EGI81244.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4] Length = 270 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 90/264 (34%), Positives = 138/264 (52%), Gaps = 9/264 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 +++ KK++GQ+FL D +I ++IA++ V+EIG G G LT+ LL VI Sbjct: 9 HQVKAKKFLGQHFLEDESIAEQIADALSLEGYKKVLEIGPGMGVLTKYLLKKPV-TTYVI 67 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D + LK+ R I++ D LK D + F P I N PYNI T+++F Sbjct: 68 EIDTESVEYLKNNYLNLAPR--ILEKDFLKYDVSETFG-DEPFAISGNFPYNISTQIVFK 124 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + + FQKEV +RI +++ S YG LSVLT A +F + P VF Sbjct: 125 TLELRDQIPEFSGM---FQKEVAQRICSKEGSKVYGILSVLTQAFYNAEYLFTVPPTVFN 181 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S V+ N +PC + ++ ++AF +RRKTLR SLK + L +A + Sbjct: 182 PPPKVDSGVLKLTRKKNYSLPCDEKLFFRVVKQAFQQRRKTLRNSLKTFELSDNL-KANV 240 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 R E L ++ F +T ++ ++ Sbjct: 241 IFGKRPEQLDVQAFIELTTLIEND 264 >gi|59800723|ref|YP_207435.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA 1090] gi|293399578|ref|ZP_06643731.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62] gi|62900452|sp|Q5F9W4|RSMA_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|59717618|gb|AAW89023.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae FA 1090] gi|291610147|gb|EFF39269.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62] Length = 259 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 128/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|308388885|gb|ADO31205.1| putative dimethyladenosine transferase [Neisseria meningitidis alpha710] gi|325129842|gb|EGC52649.1| dimethyladenosine transferase [Neisseria meningitidis OX99.30304] gi|325202507|gb|ADY97961.1| dimethyladenosine transferase [Neisseria meningitidis M01-240149] gi|325207743|gb|ADZ03195.1| dimethyladenosine transferase [Neisseria meningitidis NZ-05/33] Length = 259 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|325684673|gb|EGD26827.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 296 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 25/297 (8%) Query: 3 MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N+ + ++T I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G Sbjct: 1 MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111 G+LT+ LL G KV E DQ IL + R ++I D LK DF Sbjct: 61 IGSLTEQLLLAGG-KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119 Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 FF++S P++++ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226 S YG LS+ + + ++ F P PKV S V+ P P + ++ Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + F +RRKTL +LK L E LL + R E L+I DF RI+ + + Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293 >gi|116283278|gb|AAH05183.1| TFB1M protein [Homo sapiens] Length = 341 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 141/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L+ L E LL A I+ LR LSI F + ++ D Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312 >gi|291397177|ref|XP_002714996.1| PREDICTED: Dimethyladenosine transferase 1, mitochondrial-like [Oryctolagus cuniculus] Length = 364 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKLEKAFPESLKRHWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIVKWLEHVSCRDGPFVYGRTPMTLTFQKEVAERLAATTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + +F I F P P+V V+ F P + P I + ++K+ Q AF Sbjct: 194 SRLSIMAQYLCHVEHVFTIPGRAFVPKPEVDVGVVRFTPLIQPRIEQPFKLVEKVVQNAF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LLH A +E LR LSI F + +I D Sbjct: 254 QFRRKYCYRGLGMLFPEAQRLESTERLLHLADVEPTLRPRQLSIAHFRSLCDIYRRMCD 312 >gi|229823539|ref|ZP_04449608.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271] gi|229786983|gb|EEP23097.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271] Length = 296 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 147/284 (51%), Gaps = 20/284 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 I+ + I KK +GQNFL++ +L+K+ E+ TVIEIG G G LTQ L A+ Sbjct: 15 EIMRRFDIQMKKSLGQNFLIEPRMLEKMIEAGQVDADTTVIEIGPGIGALTQYLAHH-AK 73 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPY 127 +V+ E DQ+F IL++ + N ++++ D L VDF + S + ++ANLPY Sbjct: 74 QVLAFEIDQRFVGILQETLADCDN-VQVVHQDILSVDFSSPEYAWLQDQSRLVVVANLPY 132 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I T ++ I ++ ++SL ++ QKEV ER+TA + YG LSV ++ + Sbjct: 133 YITTPIIMRLIESNLP---FQSLVMMMQKEVAERMTAAVGTKAYGSLSVAIQLEMESEIA 189 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 F + +VF P P V S V+ P+ E+ + Q F +RRKTL +LK Sbjct: 190 FIVPKNVFIPKPNVDSAVLKLTRRPAPLVQVSDKEAFQAFVQAGFKQRRKTLWNNLKSAY 249 Query: 246 GENLL---------HQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LL QAGIE N RAE+LS+ +F + ++ Sbjct: 250 VPDLLSEDSLRQVFDQAGIEPNRRAESLSLMEFADLEAAFEAHK 293 >gi|167830454|ref|NP_001108082.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos taurus] gi|124053396|sp|Q2TBQ0|TFB1M_BOVIN RecName: Full=Mitochondrial dimethyladenosine transferase 1; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|296483884|gb|DAA25999.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos taurus] Length = 341 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++V+EKD +F P L+ +S P +L I+ D L E+ F + Sbjct: 74 LNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + + L FQKEV ER+TA S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + + I F P P+V S V+HF P P I + ++K+ Q AF Sbjct: 194 SRLSIMAQYLCDVQHILTIPGQAFVPKPEVDSGVVHFTPLTRPRIKQPFKLVEKVVQNAF 253 Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A ++ LR L++ F + ++ D Sbjct: 254 QFRRKYCHRGLGMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDVYRKMCD 312 >gi|293189141|ref|ZP_06607867.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309] gi|292821986|gb|EFF80919.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309] Length = 328 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 17/285 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +K I I P K +GQNF+ D ++KI + G G V+E+G G G+LT LL + Sbjct: 36 EVKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVVEVGPGLGSLTLALLEV 95 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII 122 GAR V +E D L + S+ +RL ++ DA ++ F + +P +++ Sbjct: 96 GAR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLV 154 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L N + A P + + ++ Q EV +R+ A S YG SV W Sbjct: 155 ANLPYNVAVPVLLNMLEA---FPSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYG 211 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQS 240 I VF+P P V S ++ P + ++T AFG+RRKTLR + Sbjct: 212 SVERAGTIGRSVFWPVPGVDSALVRLTRLETPRGDDELRRATFEVTDVAFGQRRKTLRAA 271 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK G E LL AGI+ R E LSI++F + + + + Sbjct: 272 LKNWVGGPEASEALLSAAGIDPTRRGETLSIDEFVELGRAVIEAR 316 >gi|323465762|gb|ADX69449.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus helveticus H10] Length = 294 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL G Sbjct: 13 TQAIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAG 72 Query: 70 ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV E D IL++ + +R +++ D LK +F++ FF++S PI Sbjct: 73 A-KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPI 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ Sbjct: 132 KVVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238 + ++ + F P PKV S+V+ P N P + + + F +RRKTL Sbjct: 189 TEMDVKVALEVKHNSFMPRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 +LK L E L+ + G++ +R ENL+IE F I Sbjct: 249 NNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIAR 289 >gi|261380520|ref|ZP_05985093.1| dimethyladenosine transferase [Neisseria subflava NJ9703] gi|284796774|gb|EFC52121.1| dimethyladenosine transferase [Neisseria subflava NJ9703] Length = 259 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 128/260 (49%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAK-KLNRLHVCEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I +I+ NLPYNI T LLF Sbjct: 63 DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P+ Sbjct: 118 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAAEKYVALSNYL 254 >gi|319940876|ref|ZP_08015215.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B] gi|319805758|gb|EFW02539.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B] Length = 265 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 133/255 (52%), Gaps = 9/255 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D + +++IA S G +IEIG G LT+ +++L + +E Sbjct: 8 GHHARKRFGQNFLHDRHWIERIARSIDPKPGDELIEIGPGQAALTREVVSLAGHE-TAVE 66 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + P L +I+ DAL +D++ +R++ NLPYNI + LLF Sbjct: 67 IDRDLAAFLRTQFT--PEELTLIEADALTLDWKTVL-PGKRLRVLGNLPYNISSPLLFAL 123 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + A + QKEV +R+TA S YGRLSV+ +R +FD+ P F P Sbjct: 124 LPAAG---RIIDQHFMLQKEVVDRMTAVPGSKTYGRLSVMLQYRYVMHKLFDVPPGAFVP 180 Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKVTS+++ +P N + +I AF +RRK LR SL E+ + AG+ Sbjct: 181 APKVTSSIVRMVPKPVENLPAVDMSVFSEIVAAAFQQRRKMLRGSLSAFLDESSIISAGV 240 Query: 256 ETNLRAENLSIEDFC 270 E RAE LS++DF Sbjct: 241 EPTARAETLSVDDFV 255 >gi|329961933|ref|ZP_08299946.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057] gi|328531156|gb|EGF58006.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057] Length = 264 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 91/261 (34%), Positives = 143/261 (54%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + G+ V+E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + ++ II+DD LK++ ++ F+ +P + N PYNI +++ F + Sbjct: 63 DFESVAYLREAYPELEDK--IIEDDFLKMNLQRLFD-GNPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F + HVF P Sbjct: 120 ENKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ I Sbjct: 177 PKVKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+++F +TN + + Sbjct: 237 NKRPEQLSVQEFIDLTNRVEE 257 >gi|91781824|ref|YP_557030.1| dimethyladenosine transferase [Burkholderia xenovorans LB400] gi|118600850|sp|Q145L1|RSMA_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91685778|gb|ABE28978.1| dimethyladenosine transferase [Burkholderia xenovorans LB400] Length = 277 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ A Sbjct: 10 RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ LK LE+ DAL DF +RI+ NLPYNI Sbjct: 70 PLHAVELDRDLIGRLKTKFGDL---LELHAGDALAFDFGSLAAPGDKASLRIVGNLPYNI 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + + Q EV ER+ A+ + + RLSV+ +R D Sbjct: 127 SSPLLFHL---TAFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ P L ++ AF +RRK LR +L Sbjct: 184 VPPEAFNPPPKVDSAIVRMIPYELHELPPVDERVLGELVTAAFSQRRKMLRNTLAAYRDS 243 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ + ++ R+ I+ ++ Sbjct: 244 VDFEGLGFDLQRRAEDVPVAEYVRVAQIVAASK 276 >gi|170017706|ref|YP_001728625.1| dimethyladenosine transferase [Leuconostoc citreum KM20] gi|226732593|sp|B1N079|RSMA_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169804563|gb|ACA83181.1| Dimethyladenosine transferase [Leuconostoc citreum KM20] Length = 295 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 20/289 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + IL+ Y + KK GQNFL DLN+L I + +G VIEIG G G LT Sbjct: 7 IANPTRT-QAILNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALT 65 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118 + L A+KV+ E D +L + + N +++I++D LKV+ F + Sbjct: 66 EQLA-RSAKKVVAFEIDPHMVAVLAETLLPYDN-VKVIENDILKVNLAHVIATEFGEGAH 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++I+ANLPY I T +L + A W+++ ++ Q+EV +R+ A+ + YG L++ Sbjct: 124 VKIVANLPYYITTPILMQLLRAKI---SWDNIVVMMQREVADRLNAEIGTKAYGVLTLTI 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237 + +A + + F PSP V S V+ P + + L + + +F RRK+L Sbjct: 181 QYYAQAQLAIKVPASAFNPSPNVDSAVVMLTPIVPETVVDNPDKLFSVVKGSFAHRRKSL 240 Query: 238 RQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ ++ G+ + L I +++RAE LS+ + L Sbjct: 241 WNNMLQMFGKQEDVKQRIQDALDSVNIASSIRAERLSLNQLTALYEALK 289 >gi|325136080|gb|EGC58690.1| dimethyladenosine transferase [Neisseria meningitidis M0579] Length = 259 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + M+ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L I Sbjct: 175 PKVDSAVVRIIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255 >gi|240016023|ref|ZP_04722563.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA6140] Length = 259 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 129/263 (49%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+SP F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVSPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|296199503|ref|XP_002747175.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Callithrix jacchus] Length = 343 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPSIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNASVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFPESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLESMSCRDGPFVYGRTQMTLTFQKEVAERLAATTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P ++P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIHPKIQQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A ++ LR LSI F + ++ D Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLELADVDPTLRPRQLSIPQFKSLCDVYRRMCD 312 >gi|218291058|ref|ZP_03495090.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius LAA1] gi|218239012|gb|EED06218.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius LAA1] Length = 284 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 17/281 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + +K +L + +I KK GQNFL+D +L I + V+E+G G G LT L Sbjct: 5 SAREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVEPDARTVVLEVGPGLGALTAAL 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121 A++V+ IEKD+ P+L ++ + H N E++ +D LKVD + + Sbjct: 65 AER-AKRVVAIEKDESLRPVLDEVLAPHGNA-EVLYEDCLKVDLRALLAPRLDEGDRLVF 122 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ANLPY + T +LF + +D ++ QKEV +R+ A+ YG LS+ +R Sbjct: 123 AANLPYYVTTPILFQVLESDLP---VSHAVVMVQKEVADRMVARPGGKDYGVLSIGVQYR 179 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 + +F++ P F P P V S V+ P +L ++ + AFG RRKTL Sbjct: 180 GEVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPALRAADEAALFRVVRAAFGTRRKTLEN 239 Query: 240 SLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 +L + + AGI+ RAE LS+ DF R+T Sbjct: 240 ALAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLTE 280 >gi|109072294|ref|XP_001094657.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 2 [Macaca mulatta] Length = 345 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A I+ LR LSI F + + D Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFRSLCEVYRRMCD 312 >gi|326202941|ref|ZP_08192808.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782] gi|325987018|gb|EGD47847.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782] Length = 285 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 86/292 (29%), Positives = 145/292 (49%), Gaps = 25/292 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NN S I+ + + K +GQNFL D ++++I ++S IEIG G G+ Sbjct: 1 MIKNNTS----EIIKKHGLKLTKALGQNFLTDFGVVQRIVDASDIDKDTLAIEIGPGVGS 56 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115 +T+ L A V IE D++ P L D S + N + II +D +K D + Sbjct: 57 MTRELAERSAG-VAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDAIIKKYKELY 114 Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 + ++++ANLPY I T ++ ++ + + + QKEV ER+ + + YG L Sbjct: 115 NAKSVKVVANLPYYITTPIIMRFLEE---VKGVDKMVFMVQKEVAERMVSGPGTKDYGAL 171 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 SV + + ++FD+ PH F P P+V ST+I P + KI + +FG+ Sbjct: 172 SVAVQFYSNPKIVFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVADKNLYFKIVKASFGQ 231 Query: 233 RRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKTL +L G + ++ + G+ N+R E L++ F ++TN++ Sbjct: 232 RRKTLVNALSNSGFFNKNKEQIKQIIAEMGLNENIRGEVLTVAQFAQLTNLI 283 >gi|323359389|ref|YP_004225785.1| dimethyladenosine transferase [Microbacterium testaceum StLB037] gi|323275760|dbj|BAJ75905.1| dimethyladenosine transferase [Microbacterium testaceum StLB037] Length = 279 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 19/278 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K +GQNF++D N ++KI + +G V+EIG G G+LT +L Sbjct: 8 AAEIRRLATELDVTPTKKLGQNFVVDANTVRKIVQVAGVSASDRVVEIGPGLGSLTLAIL 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 GA V+ +E D + L + ++ H RL +I DAL+VD P ++A Sbjct: 68 ETGA-SVVAVEIDHRLAARLPETAAAHEVPAERLMVIDADALRVDE----LPGEPSVLVA 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN+ +L +++ P+ S ++ Q EVGER+ A S YG SV W Sbjct: 123 NLPYNVSVPVLLHFLET---FPYLRSGVVMVQAEVGERLAAPPGSKVYGAPSVKAAWYGS 179 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241 + +S VF+P P V S ++ F P +I AF +RRK LRQ+L Sbjct: 180 WRLAGTVSRQVFWPVPNVDSVLVAFDRDAEPRGTEEHRRRTFQIVDAAFQQRRKMLRQAL 239 Query: 242 KRLGG------ENLLHQAGIETNLRAENLSIEDFCRIT 273 + G L +AG++ LR E L+++D+ RI Sbjct: 240 SGVLGGTAAEASARLERAGVDPTLRGEQLTVDDYARIA 277 >gi|313123062|ref|YP_004033321.1| ribosomal RNA small subunit methyltransferase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279625|gb|ADQ60344.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 296 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 150/297 (50%), Gaps = 25/297 (8%) Query: 3 MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N+ + ++T I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G Sbjct: 1 MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111 G+LT+ LL G KV E D IL + R ++I D LK DF Sbjct: 61 IGSLTEQLLLAGG-KVAAYEVDHSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119 Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 FF++S P++++ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226 S YG LS+ + + ++ F P PKV S V+ P P + ++ Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + F +RRKTL +LK L E LL + R E L+I DF RI+ + + Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293 >gi|187922684|ref|YP_001894326.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN] gi|226729766|sp|B2SX63|RSMA_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|187713878|gb|ACD15102.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN] Length = 276 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ A Sbjct: 10 RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ LK LE+ DAL DF +RI+ NLPYNI Sbjct: 70 PLHAVELDRDLIGRLKTKFGGL---LELHAGDALAFDFGSLAAPGEKASLRIVGNLPYNI 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ ++ + Q EV ER+ A+ + + RLSV+ +R D Sbjct: 127 SSPLLFHL---TSFAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ P L ++ AF +RRK LR +L Sbjct: 184 VPPEAFNPPPKVDSAIVRMIPYELHELAPVDERVLGEVVTAAFSQRRKMLRNTLAAYRDS 243 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ ++++ R+ I+ Sbjct: 244 VDFEALGFDLQRRAEDVPVDEYVRVAQIVA 273 >gi|332524712|ref|ZP_08400911.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rubrivivax benzoatilyticus JA2] gi|332108020|gb|EGJ09244.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rubrivivax benzoatilyticus JA2] Length = 254 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQ+FL D I+ I ++ G ++EIG G G +T LL R + V+E Sbjct: 2 KHQPRKRFGQHFLADDAIIDAIVDAIDPQPGEAMVEIGPGLGAMTMPLLERIER-LTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136 D+ L+ + LE+++ D LKVDF P+R++ NLPYNI T +LF+ Sbjct: 61 LDRDLAARLRRVKG-----LEVVEADVLKVDFAALAAAAGRPLRVVGNLPYNISTPILFH 115 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + A + QKEV +R+ A S YGRLSV+ WR + D+ P F Sbjct: 116 LLDAVEH---VVDQHFMLQKEVVDRMAAGPGSKDYGRLSVMLQWRYDIESVLDVPPEAFD 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S ++ +P P L ++ AF +RRK LR +L R E + G + Sbjct: 173 PPPRVDSAIVRMLPLPAPEGVDAALLGELVTVAFSQRRKLLRHTLGRW-MEQRGAEVGFD 231 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE + + D+ + + Sbjct: 232 LQRRAEEVPVADYLALARAVA 252 >gi|212278075|gb|ACJ23052.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 128/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVDNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|91776504|ref|YP_546260.1| dimethyladenosine transferase [Methylobacillus flagellatus KT] gi|118600878|sp|Q1GZB8|RSMA_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91710491|gb|ABE50419.1| dimethyladenosine transferase [Methylobacillus flagellatus KT] Length = 255 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 11/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + KK GQNFL D I+ + ++ ++EIG G G +TQ LL + + V+E Sbjct: 2 KHVAKKRFGQNFLTDRAIINSLIDAIAPQPQDCMVEIGPGLGAMTQPLLERL-QHLHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ ++ Q ++L I DALK + F NIS +R++ NLPYNI T +LF+ Sbjct: 61 IDRDIIQWMQGHYPQ--DKLTIYASDALKFN---FGNISDRLRVVGNLPYNISTPILFHL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + + QKEV ER+ A +S YGRLSV+ +R + + P F P Sbjct: 116 LDN---VPHIIDMHFMLQKEVVERMVAAPSSAAYGRLSVMLQYRLHMEYLLTVPPEAFDP 172 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S + +P+ P P E+L +I AF +RRKTLR +LK L + GI Sbjct: 173 APKVESAFVRAVPYTVLPHPAKDEALLGRIVTAAFAQRRKTLRNTLKGLLDDTGFASLGI 232 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + LRAEN++ F I N L Sbjct: 233 DPQLRAENIAPAGFVAIANYLA 254 >gi|241759911|ref|ZP_04758011.1| dimethyladenosine transferase [Neisseria flavescens SK114] gi|241319919|gb|EER56315.1| dimethyladenosine transferase [Neisseria flavescens SK114] Length = 263 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L+ ++ V E Sbjct: 8 HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLVK-KLNRLHVCEI 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I +I+ NLPYNI T LLF Sbjct: 67 DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P+ Sbjct: 122 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 178 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 179 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 238 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE+++ E + ++N L Sbjct: 239 PQDRAEHIAAEKYVELSNYL 258 >gi|227873154|ref|ZP_03991445.1| dimethyladenosine transferase [Oribacterium sinus F0268] gi|227840985|gb|EEJ51324.1| dimethyladenosine transferase [Oribacterium sinus F0268] Length = 312 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 139/287 (48%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M S +L KK GQNFL+D ++L I + VIEIG G G Sbjct: 14 MAKLVDSKETIAVLQRTNFQFKKQFGQNFLIDASVLDHIISYAKIQKEDLVIEIGPGIGT 73 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI- 119 LT+ L A +VI IE D + PIL++ + N ++ D LKVDF + Sbjct: 74 LTEALCEH-AGQVIAIEIDDKLIPILEENLAAKEN-FRLLHQDVLKVDFTELLKEYPGFS 131 Query: 120 --RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++ANLPY I T +L + + S+T++ QKEV ER+ A + YG LS+ Sbjct: 132 SVKVVANLPYYITTPILLSLLEKKLP---LSSITVMVQKEVAERMQAGPGTKDYGALSLA 188 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRK 235 + +K ++ ++ PH F P PKV+S VIH + E L K + +F +RRK Sbjct: 189 VQYYSKPEIVQEVPPHCFIPRPKVSSMVIHLSIYKESPVECENPEYLFKTIKASFMQRRK 248 Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L + +++L N+R E LS+++F I++ L Sbjct: 249 TLVNALSAGLSLDKEVIKSVLSALSYPENVRGETLSLDEFAEISDNL 295 >gi|295132335|ref|YP_003583011.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87] gi|294980350|gb|ADF50815.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87] Length = 279 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 91/257 (35%), Positives = 128/257 (49%), Gaps = 9/257 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ KK++GQ+FL D NI KKI ++ V+EIG G G LT+ LL +V V+E Sbjct: 21 QVRAKKHLGQHFLKDENIAKKIGDTLSLSGYDYVLEIGPGMGVLTKFLL-QKDTEVHVVE 79 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L Q R I + D LK D + F P + N PYNI ++++F Sbjct: 80 IDAESVDYLNANYLQLHGR--IHEQDFLKYDLTQVFG-HKPFAVTGNFPYNISSQIVFKV 136 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + + FQKEV +RI ++ S YG LSVLT A +F + P VF P Sbjct: 137 LEMRDQIPEFSGM---FQKEVAQRICEKEGSKTYGILSVLTQAYYDAEYLFTVPPSVFNP 193 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ + + C +I + F +RRKTLR SLK L + L + I Sbjct: 194 PPKVDSGVLKLTRKKDYHLKCNEALFFRIVKMGFQQRRKTLRNSLKSLNLPDTLREDAI- 252 Query: 257 TNLRAENLSIEDFCRIT 273 R E LS +DF +T Sbjct: 253 FGKRPEQLSTQDFISLT 269 >gi|218129242|ref|ZP_03458046.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697] gi|317475217|ref|ZP_07934484.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA] gi|217988620|gb|EEC54940.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697] gi|316908670|gb|EFV30357.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA] Length = 261 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 91/260 (35%), Positives = 139/260 (53%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA + + + V+E+G G G LTQ LL G R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIANTVDACPELPVLEVGPGMGVLTQFLLPKG-RTVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLED--HIIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F + HVF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ + Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFIELTNRVE 256 >gi|156415992|ref|NP_057104.2| dimethyladenosine transferase 1, mitochondrial [Homo sapiens] gi|74751555|sp|Q8WVM0|TFB1M_HUMAN RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=h-mtTFB; Short=h-mtTFB1; Short=hTFB1M; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|17389500|gb|AAH17788.1| Transcription factor B1, mitochondrial [Homo sapiens] gi|56204607|emb|CAI20506.1| transcription factor B1, mitochondrial [Homo sapiens] gi|119568075|gb|EAW47690.1| transcription factor B1, mitochondrial [Homo sapiens] gi|123982134|gb|ABM82896.1| transcription factor B1, mitochondrial [synthetic construct] gi|123996967|gb|ABM86085.1| transcription factor B1, mitochondrial [synthetic construct] gi|208967957|dbj|BAG73817.1| mitochondrial transcription factor B1 [synthetic construct] gi|311350098|gb|ADP92254.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350100|gb|ADP92255.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350102|gb|ADP92256.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350104|gb|ADP92257.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350106|gb|ADP92258.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350108|gb|ADP92259.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350110|gb|ADP92260.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350112|gb|ADP92261.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350114|gb|ADP92262.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350116|gb|ADP92263.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350118|gb|ADP92264.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350120|gb|ADP92265.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350122|gb|ADP92266.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350124|gb|ADP92267.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350126|gb|ADP92268.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350128|gb|ADP92269.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350130|gb|ADP92270.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350132|gb|ADP92271.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350134|gb|ADP92272.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350136|gb|ADP92273.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350138|gb|ADP92274.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350140|gb|ADP92275.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350142|gb|ADP92276.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350144|gb|ADP92277.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350146|gb|ADP92278.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350148|gb|ADP92279.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350150|gb|ADP92280.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350152|gb|ADP92281.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350154|gb|ADP92282.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350156|gb|ADP92283.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350158|gb|ADP92284.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350160|gb|ADP92285.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350162|gb|ADP92286.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350164|gb|ADP92287.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350166|gb|ADP92288.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350168|gb|ADP92289.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350170|gb|ADP92290.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350172|gb|ADP92291.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350174|gb|ADP92292.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] gi|311350176|gb|ADP92293.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens] Length = 346 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 141/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L+ L E LL A I+ LR LSI F + ++ D Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312 >gi|161506815|ref|YP_001576769.1| dimethyladenosine transferase [Lactobacillus helveticus DPC 4571] gi|172048354|sp|A8YX55|RSMA_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160347804|gb|ABX26478.1| Dimethyladenosine transferase [Lactobacillus helveticus DPC 4571] Length = 294 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 97/278 (34%), Positives = 149/278 (53%), Gaps = 20/278 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL GA K Sbjct: 16 IINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA-K 74 Query: 73 VIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 V E D IL++ + +R +++ D LK +F++ FF++S PI+++ Sbjct: 75 VFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVV 134 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ Sbjct: 135 ANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEM 191 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSL 241 + +++ + F P PKV S+V+ P N P + + + F +RRKTL +L Sbjct: 192 DVKVALEVNHNSFMPRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNL 251 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 K L E L+ + G++ +R ENL+IE F I Sbjct: 252 KTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIAR 289 >gi|114609907|ref|XP_001143221.1| PREDICTED: transcription factor B1, mitochondrial isoform 2 [Pan troglodytes] gi|114609909|ref|XP_001143300.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 3 [Pan troglodytes] Length = 346 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L+ L E LL A I+ LR LSI F + + D Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCEVYRKMCD 312 >gi|271969807|ref|YP_003344003.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021] gi|270512982|gb|ACZ91260.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021] Length = 281 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 130/284 (45%), Gaps = 16/284 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ ++ + I P K +GQNF++D +++I +G VIE+G G G+ Sbjct: 1 MSLLGPV-EIRNLAEKLDIRPTKKLGQNFVIDGGTVRRIVRVAGLRPDDVVIEVGPGLGS 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 LT LL R V+ +E D L + + + RL ++ DA++V E Sbjct: 60 LTLALLPE-VRGVVAVEIDPVLAAQLPLTVAERAPEFAERLTVVLADAMRVLPEDL-PED 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P ++ANLPYN+ ++ + + P ++ ++ Q EV +R+ A S YG SV Sbjct: 118 LPTALVANLPYNVSVPVVLHLLET---LPSLRTILIMVQSEVADRLAAAPGSKIYGIPSV 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRK 235 W + VF+P P V S ++ P E + + AF +RRK Sbjct: 175 KAAWYADVRRAGPVGRTVFWPVPNVDSGLVAMTRREPPSTRAAREDVFAVVDAAFAQRRK 234 Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 TLR +L G E L AGI+ + R E L++EDF RI Sbjct: 235 TLRAALASWAGTPAAAEQALRAAGIDPSERGEQLTVEDFARIAE 278 >gi|322419457|ref|YP_004198680.1| dimethyladenosine transferase [Geobacter sp. M18] gi|320125844|gb|ADW13404.1| dimethyladenosine transferase [Geobacter sp. M18] Length = 277 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 141/278 (50%), Gaps = 17/278 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I KK GQNFL+D N+L +I ++E+G G G L+++L GAR V +E Sbjct: 5 RIKAKKEFGQNFLVDDNVLTRIVSCVAPGTEDCILEVGPGRGALSRLLAASGARFV-AVE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLL 134 D+ P L + + +R+EI D L+VD + +P ++ ANLPYNI +++L Sbjct: 64 WDRDLIPFLNSEFAGN-DRVEIGHGDILRVDLHQILTTRAPGRKWKVAANLPYNISSQVL 122 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F ++ +E L L+ QKEVG+R+TA YG L+VL F + P Sbjct: 123 FKFMED---CDLFEGLVLMLQKEVGDRLTAPPGCKDYGALTVLLRLHFDIRREFIVKPGS 179 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ F P P E +++ + AF +RRKTL SL+ G ++ Sbjct: 180 FRPIPKVDSAVLSFTPLPAPRVEVGDEELFRRLVKGAFNQRRKTLLNSLRSAGFDDSDGS 239 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L + I+ R E LS+E+F ++ L + +A Sbjct: 240 LSAALSRCNIDGLRRGETLSLEEFAALSRDLYPGKSLA 277 >gi|260102234|ref|ZP_05752471.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075] gi|260083975|gb|EEW68095.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075] Length = 291 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 97/278 (34%), Positives = 150/278 (53%), Gaps = 20/278 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL GA K Sbjct: 16 IINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA-K 74 Query: 73 VIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122 V E D IL++ + +R +++ D LK +F++ FF++S PI+++ Sbjct: 75 VFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVV 134 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ Sbjct: 135 ANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEM 191 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSL 241 + +++ + F P PKV S+V+ P N P + + + F +RRKTL +L Sbjct: 192 DVKVALEVNHNSFMPRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNL 251 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 K L E L+ + G++ +R ENL+IE F I+ Sbjct: 252 KTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEISR 289 >gi|323342302|ref|ZP_08082534.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463414|gb|EFY08608.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 270 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 17/280 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N S S+ +L Y+ KK+ GQNF++D ++++ IA SG G TV+EIG G G L Sbjct: 3 TIANYSVSM-ELLRRYERRAKKHFGQNFIIDPSVVRNIASQSG--AGGTVLEIGPGLGAL 59 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 TQ L KVI E D IL + ++ N + +I D LK D + + PI + Sbjct: 60 TQQLAETY-DKVIAYEIDPHMVEILNETLEEYDN-VNVIHQDFLKADLSMY---TEPITV 114 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ANLPY I T +LF + D ++T++ QKE+ +R+ A + Y LS+ + Sbjct: 115 CANLPYYITTPILFRLMELD-----IVAMTIMVQKEIADRLGASPQTKDYSSLSIQMQYY 169 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + +S F P P V S VI P +P ++ + ++ F RRKTL +L Sbjct: 170 FDVKTVLKVSKESFHPRPGVESIVIKLTPKHQTMPYDEKTFFEFVKKCFQFRRKTLVNNL 229 Query: 242 KRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 K + + +L G+ETN+RA+ L+ +D+ R+ L Sbjct: 230 KTIDKDVDYATVLESLGLETNIRADYLTFDDYIRLYGALY 269 >gi|82701652|ref|YP_411218.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196] gi|119365040|sp|Q2YBP5|RSMA_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|82409717|gb|ABB73826.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196] Length = 259 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 92/261 (35%), Positives = 131/261 (50%), Gaps = 11/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P++ GQNFL+D + I + ++EIG G G LTQ LL + V+E Sbjct: 2 QHTPRRRFGQNFLVDSQTVTDIVHALHPRREDVMVEIGPGLGALTQPLLQSLEH-LHVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L++ S RL + + DAL+ DF +R++ NLPYNI T LLF+ Sbjct: 61 IDRDIVKRLRNEFSAK--RLTVHEGDALEFDFSSL---GESLRVVGNLPYNISTPLLFHL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV R+ A+ ++ YGRLSV+ R + +F + P F P Sbjct: 116 ---SRFTDHLRDMHFMLQKEVVARMVAKPSTSDYGRLSVMLQCRFEMEQLFIVPPECFHP 172 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S V+ IP P I E L I AF +RRK LR +L+ + GI Sbjct: 173 PPKVQSAVVRMIPLKKPLIEASQEKLFAEIVSAAFSQRRKILRNTLRDYLTGEDYLKLGI 232 Query: 256 ETNLRAENLSIEDFCRITNIL 276 ++NLRAENLSI + ITN Sbjct: 233 DSNLRAENLSITQYVAITNYF 253 >gi|255994696|ref|ZP_05427831.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989] gi|255993409|gb|EEU03498.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989] Length = 285 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 15/278 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++K + + I P K GQNFL+D NI++KI +S+G V+EIG G G LT+ + Sbjct: 12 TIKQLCDCFDIRPNKRYGQNFLIDYNIVQKITDSAGLTSSDRVLEIGPGIGTLTREISK- 70 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A V+V+E D++ P+L S N ++I+ D K + F +++I NLPY Sbjct: 71 KAGSVVVVEVDKKLIPVLDSTLSHCSN-IKIVNQDIFKYNVGDDFL--DTVKVIGNLPYY 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + P + ++ QKEV +R A++ S +++ + ++ +F Sbjct: 128 ITTPIVMWLLEE---VPQATEIVIMMQKEVAKRFAAKQGSRDSSAVTLAVQYYSEIEELF 184 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG 246 D+S H F+P+PKV STV+ H + L + +++F KRRKTL SL + G Sbjct: 185 DVSKHCFYPAPKVDSTVVRLKRHTENPVAVKSEKLLFECIKKSFEKRRKTLINSLFGING 244 Query: 247 EN------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L++AGI+ LRAENL+++ + I N++ D Sbjct: 245 LEKERLVKILNEAGIDPRLRAENLTLQQYAGIANLIYD 282 >gi|42518291|ref|NP_964221.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533] gi|62900557|sp|Q74LI0|RSMA_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|41582575|gb|AAS08187.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533] gi|329666601|gb|AEB92549.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 21/296 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + + + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+ Sbjct: 5 MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGS 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKV----DFE 110 LT+ LL GA KV+ E DQ IL + + +R +++ D LK D + Sbjct: 64 LTEQLLLAGA-KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDND 122 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 F ++S ++I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A+ + Sbjct: 123 GFLDLSKSVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAKPKTKE 179 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229 YG LS+ R + ++ F P PKV S V+ P L + + Sbjct: 180 YGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMC 239 Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 F +RRKTL +LK L E L++ G++ +R E L++ F ++ ++L D Q Sbjct: 240 FAQRRKTLANNLKTLIKDKDEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKDRQ 295 >gi|149369569|ref|ZP_01889421.1| dimethyladenosine transferase [unidentified eubacterium SCB49] gi|149356996|gb|EDM45551.1| dimethyladenosine transferase [unidentified eubacterium SCB49] Length = 284 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 90/261 (34%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D + + IAE+ VIEIG G G LT+ LL ++ ++ Sbjct: 26 VRAKKHLGQHFLTDEGVARDIAETLTHKGYKNVIEIGPGTGVLTKYLLEKDIN-LVAMDL 84 Query: 79 DQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L+ + +PN L+I++ D L+ D + +F I N PYNI T+++F Sbjct: 85 DSDSIAYLE---AHYPNDNLQILEADFLREDLQDYFGTEQ-YAITGNFPYNISTQIVFKA 140 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + + FQKEV RI A S YG LSVL A +F + P VF P Sbjct: 141 LENKEQVPEFTGM---FQKEVAMRICANHGSKTYGILSVLAQAFYDAEYLFTVPPTVFNP 197 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ + +PC L K+ + AF +RRKTLR SLK L + I Sbjct: 198 PPKVDSGVLRLTRKASLELPCSEAFLYKVVKTAFQQRRKTLRNSLKTFEISEKLKEDTI- 256 Query: 257 TNLRAENLSIEDFCRITNILT 277 R E LS+ F +T L Sbjct: 257 FGQRPEQLSVAQFIALTTKLE 277 >gi|154509599|ref|ZP_02045241.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC 17982] gi|153799233|gb|EDN81653.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC 17982] Length = 328 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 17/285 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +K I I P K +GQNF+ D ++KI + G G VIE+G G G+LT LL + Sbjct: 36 EVKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVIEVGPGLGSLTLALLEV 95 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII 122 GAR V +E D L + S+ +RL ++ DA ++ F + +P +++ Sbjct: 96 GAR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLV 154 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L N + A P + + ++ Q EV +R+ A S YG SV W Sbjct: 155 ANLPYNVAVPVLLNMLEA---FPSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYG 211 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQS 240 I VF+P P V S ++ P + + T AFG+RRKTLR + Sbjct: 212 SVERAGTIGRSVFWPVPGVDSALVRLTRLETPRGDDELRRATFEATDVAFGQRRKTLRAA 271 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 LK G E LL AGI+ R E LSI++F + + + + Sbjct: 272 LKNWAGGPEASEALLSAAGIDPTRRGETLSIDEFVELGRAVIEAR 316 >gi|167629323|ref|YP_001679822.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1] gi|167592063|gb|ABZ83811.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1] Length = 285 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 18/283 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L+ LS Y I KK +GQNFL D + +I ++ G V+EIG GP LT+ L Sbjct: 4 ELRQNLSRYGIRAKKGLGQNFLSDPVYVGRIIAAAELAAGDVVVEIGPGPATLTRDLAEA 63 Query: 69 --GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIA 123 KVI +E D++ P+L D+ +P ++EI+ DAL+VD++ P ++A Sbjct: 64 VGPGGKVIAVEVDERLRPLLDDLCRDYP-QVEILWQDALQVDYDAATQPWRGDKPFVLVA 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I T +L + L ++ QKEV +R+ A YG LSV+ + Sbjct: 123 NLPYYITTPILMRLLEGR---FSVSRLVVMVQKEVADRMLAPAGHSDYGALSVVIQYYCA 179 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241 +++ + P F P PKV+S V+ P + ++ + AF +RRKTL +L Sbjct: 180 PSLVTKVPPGAFIPPPKVSSAVVRLDRRATPPVAVVDEAAFFRVVRAAFNQRRKTLLNAL 239 Query: 242 KRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LG L AG++ R E L++++F + + L Sbjct: 240 GALGLALNKEEMARRLTAAGVDPGRRGETLNLQEFANVADALY 282 >gi|158259991|dbj|BAF82173.1| unnamed protein product [Homo sapiens] Length = 346 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II LP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGKLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L+ L E LL A I+ LR LSI F + ++ D Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312 >gi|42519999|ref|NP_965914.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034443|ref|ZP_01314444.1| hypothetical protein Wendoof_01000753 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|62900551|sp|Q73IR3|RSMA_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|42409736|gb|AAS13848.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 286 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 109/264 (41%), Positives = 151/264 (57%), Gaps = 8/264 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + + Sbjct: 17 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 76 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD+ + ++H + II+ DAL + E+ I P+++IANLPYNI L Sbjct: 77 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHIIEEEL--IERPVKVIANLPYNISVAL 134 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 W+ + F+ SLTL+FQKEV +RITA+ NS YG LSVL+ FDI P Sbjct: 135 FLKWLDS---IKFFTSLTLMFQKEVADRITARPNSKDYGPLSVLSQLLCDIKKEFDIEPK 191 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250 FFP PK+ S+VI P P LE+L K+ + F +RRK LR SL+ + E +L Sbjct: 192 EFFPRPKIHSSVITVNPLPTPKFVVNLETLIKLIRAVFAQRRKMLRNSLQNITNHAETVL 251 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 A + N R ENL+IE FC + N Sbjct: 252 ENAKLSGNERPENLTIEQFCLLAN 275 >gi|295692081|ref|YP_003600691.1| dimethyladenosine transferase [Lactobacillus crispatus ST1] gi|295030187|emb|CBL49666.1| Dimethyladenosine transferase [Lactobacillus crispatus ST1] Length = 294 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 150/295 (50%), Gaps = 23/295 (7%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT N + I++ Y + KK +GQNFL+D + I E++G VIEIG G Sbjct: 1 MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111 G+LT+ LL GA KV E D IL++ +R +I+ D LK +F++ Sbjct: 61 IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKILLKDVLKANFKE 119 Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 FF+ + PI+++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ Sbjct: 120 DIGDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226 S YG L++ K + + + F P PKV S+V+ P P + + Sbjct: 177 SKDYGPLTISVQTEMKVKLALQVGRNSFMPRPKVDSSVVVLTPLKEKPAIEDRKHFIWVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + F +RRKTL +LK L + L+ + G++ +R E+L+IE F +I + Sbjct: 237 KMCFSQRRKTLNNNLKSLLPDKTERDKLITELGVDPRIRPEDLTIEQFIKIAKFI 291 >gi|186475168|ref|YP_001856638.1| dimethyladenosine transferase [Burkholderia phymatum STM815] gi|226729765|sp|B2JCX3|RSMA_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|184191627|gb|ACC69592.1| dimethyladenosine transferase [Burkholderia phymatum STM815] Length = 276 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 127/274 (46%), Gaps = 18/274 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+N S H +K GQNFL+DL I+ I + G ++EIG G G LT Sbjct: 1 MSNSSSR-----QHQGHFARKRFGQNFLVDLGIIDSIVDVIRPQRGERMVEIGPGLGALT 55 Query: 63 QMLLTLGA---RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--S 117 + L+ A + +E D+ LK N LE+ + DAL DF Sbjct: 56 EPLVERLATPEAPLHAVELDRDLIGRLKKKFG---NLLELHEGDALAFDFGSLAGEGDKP 112 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +RI+ NLPYNI + LLF+ T+ + Q EV ER+ A+ S + RLSV+ Sbjct: 113 TLRIVGNLPYNISSPLLFHL---ATFAERVIDQHFMLQNEVVERMVAEPGSKAFSRLSVM 169 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLE-SLKKITQEAFGKRRK 235 +R + D+ P F P PKV S ++ IP+ + +P E L ++ AF +RRK Sbjct: 170 LQYRYVIDKLLDVPPESFQPPPKVDSAIVRMIPYAPHELPAVDEIKLGEVVTAAFSQRRK 229 Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 LR +L G + RAE++ + ++ Sbjct: 230 MLRNTLSTYRDSVDFEALGFDLQRRAEDVPVAEY 263 >gi|297180114|gb|ADI16337.1| dimethyladenosine transferase (rRNA methylation) [uncultured bacterium HF130_01F24] Length = 277 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 93/279 (33%), Positives = 148/279 (53%), Gaps = 10/279 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K L + LSH +K GQNFL D +++ KI + ++EIG G G Sbjct: 1 MRRDAKLPRLASGLSH---QIRKRFGQNFLHDKHVISKILGAVSPTKNDHILEIGPGFGA 57 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 +T+ L GA K+ IE D LK ++ + + I+Q DALK D + +R Sbjct: 58 ITKQLAQSGA-KLDCIELDADLAASLKTEYREYKS-VNILQADALKFDLNSIATKKNSLR 115 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPYNI T L+F+ + + + +T + Q EV +R+ ++ S YGRL ++ + Sbjct: 116 VVGNLPYNISTPLIFHLLKS---SYLIKDMTFMLQLEVIQRMVSKVGSKSYGRLGLMVQY 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR 238 + +F+I+ F P PKV S + PH +P E LK + Q AF +RRKT+R Sbjct: 173 YCEIEHLFNIASDAFVPRPKVVSALARLKPHKSPTVTAKDPECLKTVIQTAFNQRRKTIR 232 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL L E+LL + + LR ENL+++D+ RI++ ++ Sbjct: 233 NSLSTLVSESLLEEIPVNNKLRPENLTLQDYVRISDAIS 271 >gi|170691411|ref|ZP_02882576.1| dimethyladenosine transferase [Burkholderia graminis C4D1M] gi|170143616|gb|EDT11779.1| dimethyladenosine transferase [Burkholderia graminis C4D1M] Length = 276 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ A Sbjct: 10 RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ LK+ + LE+ DAL DF +RI+ NLPYNI Sbjct: 70 PLHAVELDRDLIGRLKNKFGEL---LELHAGDALAFDFGSLAAPGDAPSLRIVGNLPYNI 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R D Sbjct: 127 SSPLLFHLVS---FAPRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ P L ++ AF +RRK LR +L Sbjct: 184 VPPEAFQPPPKVDSAIVRMIPYAPHELTPVDERVLGEVVTAAFSQRRKMLRNTLAAFRDR 243 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ + ++ R+ I+ Sbjct: 244 VDFEAIGFDLQRRAEDVPVAEYVRVAQIVA 273 >gi|319638521|ref|ZP_07993283.1| dimethyladenosine transferase [Neisseria mucosa C102] gi|317400270|gb|EFV80929.1| dimethyladenosine transferase [Neisseria mucosa C102] Length = 259 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 86/260 (33%), Positives = 126/260 (48%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L + V E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAK-KLNCLHVCEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I +I+ NLPYNI T LLF Sbjct: 63 DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ AQ + YGRL V+ + M+ ++ P F P+ Sbjct: 118 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I E K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELADDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAAEKYVELSNYL 254 >gi|325955928|ref|YP_004286538.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Lactobacillus acidophilus 30SC] gi|325332493|gb|ADZ06401.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Lactobacillus acidophilus 30SC] gi|327182763|gb|AEA31210.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Lactobacillus amylovorus GRL 1118] Length = 294 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 20/280 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + I++ Y + KK +GQNFL+D + I ES+ G VIEIG G G+LT+ LL G Sbjct: 13 TRAIINRYFVKAKKNLGQNFLVDQAAILGIVESADIQPGDQVIEIGPGIGSLTEQLLLAG 72 Query: 70 ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV E D IL + + R ++I D LK +FE+ FF++S PI Sbjct: 73 A-KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAVFFDMSKPI 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 132 KVVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238 + ++ F P PKV S V+ P P + + + F +RRKTL Sbjct: 189 TEMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273 +LK L +N L+ + G++ +R E+L+IE F +I Sbjct: 249 NNLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIA 288 >gi|294669503|ref|ZP_06734570.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308416|gb|EFE49659.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 262 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ VIE Sbjct: 4 HKARKRFGQNFLQDTRIIADIVNAVRPQAEDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F +I+ +I+ NLPYNI T LLF Sbjct: 63 DRDIVGRLKTL--PFADKLVIHEGDVLQFD---FKSIAGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFEPA 174 Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + I + K+ + AF +RRKT+R +LK L G++ L GI Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFGHFAKVVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE+++ E + ++N L Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254 >gi|29349451|ref|NP_812954.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron VPI-5482] gi|253570180|ref|ZP_04847589.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6] gi|298384949|ref|ZP_06994508.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14] gi|33516931|sp|Q8A0H8|RSMA_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29341360|gb|AAO79148.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron VPI-5482] gi|251840561|gb|EES68643.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6] gi|298262093|gb|EFI04958.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14] Length = 267 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 91/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + V+E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPVLEVGPGMGVLTQFLVK-KDRLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 ENKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNDTKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+E+F +TN + + Sbjct: 237 NKRPEQLSVEEFISLTNQVEE 257 >gi|118587313|ref|ZP_01544740.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163] gi|118432302|gb|EAV39041.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163] Length = 292 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 155/280 (55%), Gaps = 16/280 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL+ Y + K +GQNFL+DLN+L++I + + TVIEIG G G+LT+ L Sbjct: 13 TRAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-A 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ E D++ PIL + + N +EI+ D LK DF F + ++I+ANLPY I Sbjct: 72 AKQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADFS-IFAKNQSLKIVANLPYYI 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF +++ ++S+T++ QKEV R+ A S YG LS+ +R ++ Sbjct: 130 TTPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILP 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 ++ F PSP V S V+ P N E+L KI + +F RRK+L +L G+N Sbjct: 187 VTRKSFMPSPNVDSAVVQLTPKENFQSFPHEEALFKIIKASFAHRRKSLVNNLLYYFGKN 246 Query: 249 L---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + G + N+R E L++E++ ++ N L++N Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286 >gi|194333711|ref|YP_002015571.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271] gi|226732609|sp|B4S787|RSMA_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|194311529|gb|ACF45924.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271] Length = 261 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 138/263 (52%), Gaps = 11/263 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +I KK +GQNFL D N ++KI +S+ G V+EIG G G LT +L + Sbjct: 7 KHTEIAVKKKLGQNFLTDRNTIRKIVQSAEIQPGDHVVEIGPGFGALTSAILEVCP-SFT 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +EKD++ +++ ++P+ + +++ D L+VDF K P++++ N+PY+I + +L Sbjct: 66 AVEKDRKLADFIRE---EYPS-VNLVESDILEVDFAKLAEEG-PVKVMGNIPYSITSPIL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + S TL+ Q EV R+ A + YG L+V +F + V Sbjct: 121 FKLLENRSH---IISETLMMQHEVALRLAANPGTKEYGILAVQLQTFCDVRYLFKVGKKV 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S V+ +P P+ C ++ + AF +RRKTL+ +LK+ + L + Sbjct: 178 FRPRPEVDSAVVRIVPKKTPLDDCETEFRRFVRLAFQQRRKTLQNNLKQHYDISQLSASE 237 Query: 255 IETNLRAENLSIEDFCRITNILT 277 + RAE+ +I +F + + + Sbjct: 238 L--QRRAESFTITEFEMLFSRIR 258 >gi|320159790|ref|YP_004173014.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1] gi|319993643|dbj|BAJ62414.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1] Length = 305 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 16/287 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 +N + +L + + P+K +GQNFL D IL++I ES+ V+EIG G G+LT Sbjct: 23 LNLPPLPVAALLRSHGLAPRKSLGQNFLTDPAILRRIVESAELPPQAEVLEIGPGLGSLT 82 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 ++L + AR+V+ +E D P+L ++ S + N +E++ D L+ D + + + ++ Sbjct: 83 RVLAQV-ARRVVAVELDSTLIPLLDEVVSPYGN-VEVLHGDILQFDPARLMSSAG-YFVV 139 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 AN+PY I + ++ + + A P + + L Q+EV ERI A LSV Sbjct: 140 ANIPYYITSAVMRHLLEASIRP---QRVVLTIQREVAERICAVPGEMSLLALSV--QVYG 194 Query: 183 KATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + I F+P PKV S V+ P LE ++ + F ++RKTLR + Sbjct: 195 APRVTLRIPAGAFYPPPKVDSAVVRVDLSPQPRIPAEQLEIFFRLIRAGFSQKRKTLRNA 254 Query: 241 L------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L K E+LL QAGI+ N RAE+L++E++ + + ++ Sbjct: 255 LSSGLGWKGERAESLLRQAGIDPNRRAESLALEEWALLVDAYVKAEE 301 >gi|150004476|ref|YP_001299220.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482] gi|166221645|sp|A6L1N4|RSMA_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149932900|gb|ABR39598.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482] Length = 280 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 94/269 (34%), Positives = 137/269 (50%), Gaps = 12/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQKN-RPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ EK F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L K +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K+ + F +RRKTLR S+ + + A Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSADPIF 236 Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282 N R E LS+++F +TN L + DI Sbjct: 237 NKRPEQLSVQEFIELTNQVEAALKNKTDI 265 >gi|292492136|ref|YP_003527575.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4] gi|291580731|gb|ADE15188.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4] Length = 265 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 8/264 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +K GQ+FL D ++ ++ G ++EIG G G LT LL + IE D Sbjct: 7 QARKRFGQHFLHDKQVIDRLHRVINPQPGELMVEIGPGQGALTLPLLRRLGH-LEAIELD 65 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWI 138 + L + + L + DAL DF + +R++ NLPYN+ T LLF+ + Sbjct: 66 RDLAAYLVENCAS-EGDLHLHNVDALTFDFRTLAREQNQRLRVVGNLPYNVSTPLLFHLL 124 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + E + + Q+EV R+ A+ YGRLSV+ + +F + P F P Sbjct: 125 AQVE---VLEDMHFMLQREVVVRLAAKPGGKDYGRLSVMVQFYCGVEPLFTVKPGAFMPP 181 Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ PH + + +L ++ +AF +RRKTL +LK L G L GI+ Sbjct: 182 PKVDSMVVRLKPHRPSLAPEIPHAALNRVVSQAFSQRRKTLANALKGLLGSADLKVLGID 241 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 R E + +E + +T ++ Sbjct: 242 PRQRPETVDLEQYLALTRYWLAHR 265 >gi|326560243|gb|EGE10631.1| dimethyladenosine transferase [Moraxella catarrhalis 7169] gi|326566439|gb|EGE16589.1| dimethyladenosine transferase [Moraxella catarrhalis BC1] gi|326570983|gb|EGE21007.1| dimethyladenosine transferase [Moraxella catarrhalis BC7] Length = 284 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K P+K GQNFL D +I+ ++ + ++EIG G G LT+ LL + VIE Sbjct: 12 KHAPRKRFGQNFLHDTHIISQVVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70 Query: 78 KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134 D+ LK +I + + II D+A+ V++ R++ NLPYNI T +L Sbjct: 71 LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + + + + QKEV +RITA+ NS YGRLSV+ + ++ + + Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247 F P PKVTS V P+ PI ES+ + +E+F RRKTLR K G E Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + GI + R E L + +F + +++ N+ Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280 >gi|268318776|ref|YP_003292432.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785] gi|262397151|emb|CAX66165.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785] Length = 296 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 21/296 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + + + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+ Sbjct: 5 MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQRGDQVIEIGPGIGS 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKV----DFE 110 LT+ LL GA KV+ E DQ IL + + +R +++ D LK D + Sbjct: 64 LTEQLLLAGA-KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDND 122 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 F ++S ++I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A+ + Sbjct: 123 GFLDLSKSVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAKPKTKE 179 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229 YG LS+ R + ++ F P PKV S V+ P L + + Sbjct: 180 YGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMC 239 Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 F +RRKTL +LK L E L++ G++ +R E L++ F ++ ++L D Q Sbjct: 240 FAQRRKTLANNLKTLIKDKDEREKLINDLGLDARVRPEELTLNQFVQLAHLLKDRQ 295 >gi|212693622|ref|ZP_03301750.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855] gi|237708782|ref|ZP_04539263.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA] gi|237724220|ref|ZP_04554701.1| dimethyladenosine transferase [Bacteroides sp. D4] gi|265755952|ref|ZP_06090419.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA] gi|212663875|gb|EEB24449.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855] gi|229437408|gb|EEO47485.1| dimethyladenosine transferase [Bacteroides dorei 5_1_36/D4] gi|229457208|gb|EEO62929.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA] gi|263234030|gb|EEZ19631.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA] Length = 280 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 94/269 (34%), Positives = 137/269 (50%), Gaps = 12/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQKN-RAVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ EK F+ P + N PYNI +++ F + Sbjct: 63 DYESVTYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L K +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K+ + F +RRKTLR S+ + + A + Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSADLIF 236 Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282 N R E LS+ +F +TN L + DI Sbjct: 237 NKRPEQLSVSEFIELTNRVEAALKNKTDI 265 >gi|190360597|ref|NP_001121947.1| dimethyladenosine transferase 1, mitochondrial [Sus scrofa] gi|186886356|gb|ACC93577.1| CGI-75 protein [Sus scrofa] Length = 340 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +K+ K + QNFLLDL + KI +GSL V E+G GPG +T+ + Sbjct: 14 PLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++V+EKD +F P L+ +S P +L I+ D L E+ F + Sbjct: 74 LNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A K S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + + I F P P+V V+HF P P I + ++K+ Q AF Sbjct: 194 SRLSIMAQYLCGVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQPFKLVEKVVQNAF 253 Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A ++ LR LS+ F + ++ D Sbjct: 254 QFRRKYCYRGLGMLFPEAQRMERTGKLLESADVDPTLRPTQLSVSHFQSLCDVYRKMCD 312 >gi|220927630|ref|YP_002504539.1| dimethyladenosine transferase [Clostridium cellulolyticum H10] gi|219997958|gb|ACL74559.1| dimethyladenosine transferase [Clostridium cellulolyticum H10] Length = 290 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 26/297 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NN S I+ +++ K +GQNFL D +++K+I ++S IEIG G G+ Sbjct: 1 MIKNNTS----EIIKKHRLKLTKALGQNFLTDFSVVKRIVDASDIDKDTLAIEIGPGVGS 56 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115 +T+ L A V IE D++ P L D S + N + II +D +K D + N Sbjct: 57 MTRELAARSAG-VAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDTIINKYREVY 114 Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 + ++++ANLPY I T ++ ++ + + + Q+EV ER+ + + YG L Sbjct: 115 NAKSVKVVANLPYYITTPIIMRFLEE---VKGVDKMVFMVQREVAERMVSGPGTKDYGAL 171 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232 SV + +K ++FD+ PH F P P+V ST+I P ++ KI + +FG+ Sbjct: 172 SVAVQFYSKPEIIFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVIDRNLYFKIVKASFGQ 231 Query: 233 RRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNI-LTDNQ 280 RRKTL +L G + +L + G N+R E L++ F +++N+ + ++Q Sbjct: 232 RRKTLVNALSNSGFFNKTKEQIKQILKEMGKSENIRGEVLTVAQFAQLSNLMINEHQ 288 >gi|237714484|ref|ZP_04544965.1| dimethyladenosine transferase [Bacteroides sp. D1] gi|262408316|ref|ZP_06084863.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] gi|293373592|ref|ZP_06619940.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f] gi|294646638|ref|ZP_06724267.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a] gi|294805896|ref|ZP_06764766.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b] gi|299148382|ref|ZP_07041444.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23] gi|229445648|gb|EEO51439.1| dimethyladenosine transferase [Bacteroides sp. D1] gi|262353868|gb|EEZ02961.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] gi|292631417|gb|EFF50047.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f] gi|292638021|gb|EFF56410.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a] gi|294446925|gb|EFG15522.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b] gi|295086621|emb|CBK68144.1| dimethyladenosine transferase [Bacteroides xylanisolvens XB1A] gi|298513143|gb|EFI37030.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23] Length = 266 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ I Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+ +F +TN + + Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257 >gi|228473773|ref|ZP_04058518.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC 33624] gi|228274794|gb|EEK13617.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC 33624] Length = 258 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 97/265 (36%), Positives = 138/265 (52%), Gaps = 8/265 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + PKK++GQ+FL +L+I ++IA + + V+EIG G G LTQ LL +V Sbjct: 1 MKKSPVQPKKHLGQHFLTNLSIAQQIANTLSEVGYDRVLEIGPGTGVLTQFLLGKNI-EV 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D + L+ S+ I+ +D LK D F+ P II N PYNI +++ Sbjct: 60 FVIEIDTESVTYLEQHFSKLKG--HILGEDFLKFDIVSHFS-KKPFAIIGNFPYNISSQI 116 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + + P + + FQKEV ERI + S YG LSVLT +F +S H Sbjct: 117 VFKLLEIRDFVPEFSGM---FQKEVAERICEKAGSKTYGILSVLTQAFYDTEYLFTVSEH 173 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S VI N +PC + +I + AFG+RRKTLR SLK E + Sbjct: 174 VFNPPPKVKSGVIRLKRKENYSLPCEEKLFFQIVKTAFGQRRKTLRNSLKSFLIEKESLK 233 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 + + R E LS+E+F + L Sbjct: 234 SDPLFDKRPEMLSVEEFITLAQWLA 258 >gi|78067504|ref|YP_370273.1| dimethyladenosine transferase [Burkholderia sp. 383] gi|119365010|sp|Q39D37|RSMA_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|77968249|gb|ABB09629.1| dimethyladenosine transferase [Burkholderia sp. 383] Length = 275 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++S+ ++ + L Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|328676628|gb|AEB27498.1| Dimethyladenosine transferase [Francisella cf. novicida Fx1] Length = 262 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + VIEIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDANVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|260893941|ref|YP_003240038.1| dimethyladenosine transferase [Ammonifex degensii KC4] gi|260866082|gb|ACX53188.1| dimethyladenosine transferase [Ammonifex degensii KC4] Length = 297 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++K +L+ + I P+K GQ+FL+ +L KI E++ TV+E+G G G LT L Sbjct: 10 SPAAVKAVLAEWGIKPRKRWGQHFLVRREVLAKIVEAAELSPADTVVEVGPGLGVLTARL 69 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRII 122 L A KV+ IE D + L+ +HP RL +++ DAL+ DF+ + P +++ Sbjct: 70 LE-KAGKVVAIELDPRLEAFLRARFGEHP-RLTLVRGDALECDFDLLVQEARGFFPYKVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + + LL T P L L+ QKEV R+ A + YG LS+L +RT Sbjct: 128 ANLPYYLTSPLLL---RLLTSPWRISLLVLMLQKEVALRLLASPGTKEYGSLSLLVQYRT 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240 +++ +S H F+P P+V S V+ P + + AF KRRKTL + Sbjct: 185 LPSLVTFVSRHSFYPPPEVDSAVVRLEVRTRPSVEVGDESVFFGVVRAAFAKRRKTLLNA 244 Query: 241 LKR----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L L E L AGI+ R E LS+E+F RI L N Sbjct: 245 LTSSSLGLSKEEWQRLLLDAGIDPGRRGETLSLEEFARIARRLQSN 290 >gi|315037470|ref|YP_004031038.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112] gi|312275603|gb|ADQ58243.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112] Length = 294 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 20/280 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + I++ Y + KK +GQNFL+D + I ES+ G VIEIG G G+LT+ LL G Sbjct: 13 TRAIINRYFVKAKKNLGQNFLVDQAAILGIVESAYIQPGDQVIEIGPGIGSLTEQLLLAG 72 Query: 70 ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV E D IL + + R ++I D LK +FE+ FF++S PI Sbjct: 73 A-KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAGFFDMSKPI 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 132 KVVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238 + ++ F P PKV S V+ P P + + + F +RRKTL Sbjct: 189 TEMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273 +LK L +N L+ + G++ +R E+L+IE F +I Sbjct: 249 NNLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIA 288 >gi|213962508|ref|ZP_03390770.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno] gi|213954834|gb|EEB66154.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno] Length = 257 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 99/263 (37%), Positives = 139/263 (52%), Gaps = 10/263 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL DLNI +KIA++ VIEIGAG G LTQ LL V ++E Sbjct: 4 VKAKKHLGQHFLKDLNIAQKIADTLSLKGYNKVIEIGAGMGVLTQFLLKKDVD-VHIVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L+ + + II DD LK + + I P II N PYNI T+++F + Sbjct: 63 DKESVAYLETHYPELKGK--IIADDFLKYNIADY--IGEPFAIIGNFPYNISTQIVFKLL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + + FQKEV ERI + S YG LSVL A+ +F +S VF P Sbjct: 119 ELREYVPEFSGM---FQKEVAERICEHEGSKTYGILSVLVQAFYDASYLFTVSEGVFNPP 175 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + N + C + + AF +RRKTLR SLK+ + L Q I Sbjct: 176 PKVKSGVIRLVRKTNFHLDCDESLFFTVVKTAFNQRRKTLRNSLKQFLIDENLKQDSI-F 234 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 + R E L +DF RIT ++++ Sbjct: 235 DKRPEQLPWQDFVRITKVISEQH 257 >gi|118497159|ref|YP_898209.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida U112] gi|194323457|ref|ZP_03057234.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida FTE] gi|166221666|sp|A0Q5E0|RSMA_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118423065|gb|ABK89455.1| dimethyladenosine transferase [Francisella novicida U112] gi|194322312|gb|EDX19793.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida FTE] Length = 262 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + VIEIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|147676415|ref|YP_001210630.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI] gi|189028813|sp|A5D673|RSMA_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146272512|dbj|BAF58261.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI] Length = 295 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 138/296 (46%), Gaps = 23/296 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ I+ + I P+K +GQNFL+DLNI+ KI +++ V+EIG G G Sbjct: 1 MIVVASPAVVREIMRRHGISPRKSLGQNFLIDLNIIDKIIKAADLTPADLVVEIGPGLGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115 L A KV+ +E D+ P L ++ +EII+ DAL VDF++ Sbjct: 61 L-TARAAARAGKVLAVEVDRGLLPALAEVLEG-AGNVEIIRGDALDVDFDRLAGEKTDGA 118 Query: 116 ----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 +++ANLPY + LL + + ++ Q EV R+TA + Y Sbjct: 119 FGRGGKKYKLLANLPYYLTGPLLL---RLLLERFNFALMVVMVQLEVAFRLTASPGTADY 175 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229 G LSV + T+ ++F + VF+P P V S V+ P + ++ + A Sbjct: 176 GALSVAVQYFTEPKVLFRVPRTVFYPPPGVDSAVVRLALRPAPAVTVRNEDVFFQVVRAA 235 Query: 230 FGKRRKTLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 FG RRKTL SL G +L +AGI+ R E LS+ +F I + D Sbjct: 236 FGFRRKTLLNSLAASGLGPGREAWLEVLKRAGIDPQRRGETLSLSEFASIADSFLD 291 >gi|58698105|ref|ZP_00373028.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535351|gb|EAL59427.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila ananassae] Length = 288 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 109/264 (41%), Positives = 152/264 (57%), Gaps = 8/264 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + + Sbjct: 17 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 76 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD+ + ++H + II+ DAL V E+ I P+++IANLPYNI L Sbjct: 77 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVL 134 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 W++ F+ +LTL+FQKEV +RITA+ NS YG LSVL+ FDI P Sbjct: 135 FLKWLNN---IKFFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPK 191 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250 FFP PK+ S+VI P P LE+L ++T+ F +RRK LR SL+ + E +L Sbjct: 192 EFFPRPKIHSSVITVNPLPIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVL 251 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 A + N R ENL+IE FC + N Sbjct: 252 ENAKLSGNERPENLTIEQFCLLAN 275 >gi|116491525|ref|YP_811069.1| dimethyladenosine transferase [Oenococcus oeni PSU-1] gi|122276293|sp|Q04DR8|RSMA_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116092250|gb|ABJ57404.1| dimethyladenosine transferase [Oenococcus oeni PSU-1] Length = 292 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 156/280 (55%), Gaps = 16/280 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +TIL+ Y + K +GQNFL+DLN+L++I + + TVIEIG G G+LT+ L Sbjct: 13 TRTILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-A 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ E D++ PIL + + N +EI+ D LK DF F + ++I+ANLPY I Sbjct: 72 AKQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADFS-IFAKNQSLKIVANLPYYI 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF +++ ++S+T++ QKEV R+ A S YG LS+ +R ++ Sbjct: 130 TTPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILP 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 ++ F PSP V S ++ P N E+L KI + +F RRK+L +L G+N Sbjct: 187 VTRKSFMPSPNVDSAIVQLTPKENFQSFPHEEALFKIIKASFAHRRKSLVNNLLYYFGKN 246 Query: 249 L---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + G + N+R E L++E++ ++ N L++N Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286 >gi|296161013|ref|ZP_06843824.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1] gi|295888712|gb|EFG68519.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1] Length = 277 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ A Sbjct: 10 RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ LK LE+ DAL DF +RI+ NLPYNI Sbjct: 70 PLHAVELDRDLIGRLKTKFGDL---LELHAGDALAFDFGSLAAPGDKASLRIVGNLPYNI 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + + Q EV ER+ A+ + + RLSV+ +R D Sbjct: 127 SSPLLFHL---TAFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 184 VPPEAFNPPPKVDSAIVRMIPYELHELPAVDERVLGELVTAAFSQRRKMLRNTLAAYRDS 243 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ + ++ R+ I+ N+ Sbjct: 244 VDFEGLGFDLQRRAEDVPVSEYVRVAQIVAANK 276 >gi|160891201|ref|ZP_02072204.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492] gi|317481090|ref|ZP_07940169.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36] gi|156859422|gb|EDO52853.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492] gi|316902803|gb|EFV24678.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36] Length = 264 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 91/260 (35%), Positives = 140/260 (53%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ I ++E+G G G LTQ LL R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFG-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F + HVF P Sbjct: 120 EYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + + C + K++ + F +RRKTLR S+K + G++ + Sbjct: 177 PKVKSAVICMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F ++TN + Sbjct: 237 NKRPEQLSVQEFIQLTNQVE 256 >gi|329957566|ref|ZP_08298041.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056] gi|328522443|gb|EGF49552.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056] Length = 268 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 139/259 (53%), Gaps = 8/259 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ LL R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPKLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F +S HVF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G+ + Sbjct: 177 PKVKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDLLF 236 Query: 258 NLRAENLSIEDFCRITNIL 276 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFIELTNRV 255 >gi|254372526|ref|ZP_04988015.1| dimethyladenosine transferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570253|gb|EDN35907.1| dimethyladenosine transferase [Francisella novicida GA99-3549] Length = 262 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|89256872|ref|YP_514234.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica LVS] gi|115315251|ref|YP_763974.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica OSU18] gi|134302453|ref|YP_001122423.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis WY96-3418] gi|156503047|ref|YP_001429112.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009234|ref|ZP_02274165.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FSC200] gi|187932059|ref|YP_001892044.1| dimethyladenosine transferase [Francisella tularensis subsp. mediasiatica FSC147] gi|254368148|ref|ZP_04984168.1| dimethyladenosine transferase, kasugamycin resistance [Francisella tularensis subsp. holarctica 257] gi|254369747|ref|ZP_04985757.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FSC022] gi|290953903|ref|ZP_06558524.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica URFT1] gi|295312728|ref|ZP_06803470.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica URFT1] gi|119365026|sp|Q2A218|RSMA_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122324752|sp|Q0BKP7|RSMA_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221665|sp|A7NDV3|RSMA_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221667|sp|A4IZF1|RSMA_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732583|sp|B2SDQ1|RSMA_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89144703|emb|CAJ80034.1| dimethyladenosine transferase , kasugamycin resistance [Francisella tularensis subsp. holarctica LVS] gi|115130150|gb|ABI83337.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica OSU18] gi|134050230|gb|ABO47301.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134253958|gb|EBA53052.1| dimethyladenosine transferase, kasugamycin resistance [Francisella tularensis subsp. holarctica 257] gi|156253650|gb|ABU62156.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122706|gb|EDO66835.1| dimethyladenosine transferase [Francisella tularensis subsp. holarctica FSC022] gi|187712968|gb|ACD31265.1| dimethyladenosine transferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 262 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|254247259|ref|ZP_04940580.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184] gi|124872035|gb|EAY63751.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184] Length = 275 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 120/270 (44%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L +I AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPALLGEIVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++S+ ++ + L Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|257455041|ref|ZP_05620285.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60] gi|257447554|gb|EEV22553.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60] Length = 289 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 22/279 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQNFL D I+ +I +S + ++EIG G G +T+ LL ++ V+E Sbjct: 9 HQPRKRFGQNFLHDQVIIGRIIDSIHAGRDDLMVEIGPGMGAITEPLLKE-VNRLTVVEL 67 Query: 79 DQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNI----------SSPIRIIANLPY 127 D L+ + N L I++ +A++VD+ F +RI+ NLPY Sbjct: 68 DTDLADSLRIRIGANSNDGLTIVKANAMEVDYRALFQQIIGDYPNDTTDKKMRIVGNLPY 127 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T LLF+ +S + E + + QKEV +RITA +S YGRLS++ + + + Sbjct: 128 NISTPLLFHLLS---FADVIEDMHFMLQKEVVDRITAAVDSREYGRLSIMMQYYCETDYL 184 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG 245 + F P PKVTS V P+ PI E L + +EAF RRKTLR K+ Sbjct: 185 LTVPNGAFNPPPKVTSAVFRLRPYQQKPIVADDEKLFALVVREAFNHRRKTLRAIFKKSP 244 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 E+ L G+ R E LS++DF + N + N Sbjct: 245 ILPAVTEHQLVAWGLNPLARPETLSVQDFVTLANGIAAN 283 >gi|225630006|ref|YP_002726797.1| dimethyladenosine transferase [Wolbachia sp. wRi] gi|254808269|sp|C0R5G4|RSMA_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225591987|gb|ACN95006.1| dimethyladenosine transferase [Wolbachia sp. wRi] Length = 272 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 109/264 (41%), Positives = 152/264 (57%), Gaps = 8/264 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + + Sbjct: 1 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD+ + ++H + II+ DAL V E+ I P+++IANLPYNI L Sbjct: 61 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 W++ F+ +LTL+FQKEV +RITA+ NS YG LSVL+ FDI P Sbjct: 119 FLKWLNN---IKFFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPK 175 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250 FFP PK+ S+VI P P LE+L ++T+ F +RRK LR SL+ + E +L Sbjct: 176 EFFPRPKIHSSVITVNPLPIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 A + N R ENL+IE FC + N Sbjct: 236 ENAKLSGNERPENLTIEQFCLLAN 259 >gi|225677138|ref|ZP_03788137.1| dimethyladenosine transferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590805|gb|EEH12033.1| dimethyladenosine transferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 270 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 109/264 (41%), Positives = 153/264 (57%), Gaps = 8/264 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + + Sbjct: 1 MRKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD+ + ++H + +II+ DAL V E+ I P+++IANLPYNI L Sbjct: 61 LSIEKDRDLVKHHDQLLNEHQGKYKIIEADALHVIEEEL--IERPVKVIANLPYNISVVL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 W++ F+ +LTL+FQKEV +RITA+ NS YG LSVL+ FDI P Sbjct: 119 FLKWLNN---IKFFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIGPK 175 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250 FFP PK+ S+VI P P LE+L ++T+ F +RRK LR SL+ + E +L Sbjct: 176 EFFPRPKIHSSVITVNPLPIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHAETVL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 A + N R ENL+IE FC + N Sbjct: 236 ENAKLSGNERPENLTIEQFCLLAN 259 >gi|238020848|ref|ZP_04601274.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147] gi|237867828|gb|EEP68834.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147] Length = 257 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 122/264 (46%), Gaps = 11/264 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQNFL D I+ I + VIEIG G +T+ L ++ V E Sbjct: 3 QHQARKRFGQNFLQDTRIITDIVNAVRPQADDIVIEIGPGLAAITEPLA-RKLNQLHVCE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ LK N+L I + D L D F +I+ +I+ NLPYNI T LLF Sbjct: 62 IDRDIINHLKK--QPFANKLVIHEGDVLNFD---FRSIAGRKKIVGNLPYNISTPLLFKL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + QKEV ER+ A + YGRLSV+ + + D+ P F P Sbjct: 117 AEVAD---EVIDMHFMLQKEVVERMVAAPKTNDYGRLSVMLQYFFDMESLIDVPPESFIP 173 Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +PKV S V+ IP I + + AF +RRKTLR +LK + + L GI Sbjct: 174 APKVDSAVVRMIPVAGRIGIARDFARFADLVRLAFHQRRKTLRNNLKGVASDEDLQAVGI 233 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 RAE ++ E + ++N L D Sbjct: 234 LPAQRAEEVAAEKYVALSNWLADK 257 >gi|290891124|ref|ZP_06554186.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429] gi|290479088|gb|EFD87750.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429] Length = 292 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 155/280 (55%), Gaps = 16/280 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL+ Y + K +GQNFL+DLN+L++I + + TVIEIG G G+LT+ L Sbjct: 13 TRAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-A 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A++V+ E D++ PIL + + N ++I+ D LK DF F + ++I+ANLPY I Sbjct: 72 AKQVVAYEIDKKLIPILSETLRPYKN-VKIVNRDILKADFS-IFAKNQSLKIVANLPYYI 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF +++ ++S+T++ QKEV R+ A S YG LS+ +R ++ Sbjct: 130 TTPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILP 186 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 ++ F PSP V S V+ P N E+L KI + +F RRK+L +L G+N Sbjct: 187 VTRKSFMPSPNVDSAVVQLTPKENFQSFPHEEALFKIIKASFAHRRKSLVNNLLYYFGKN 246 Query: 249 L---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + G + N+R E L++E++ ++ N L++N Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286 >gi|223983387|ref|ZP_03633573.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM 12042] gi|223964559|gb|EEF68885.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM 12042] Length = 291 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 18/293 (6%) Query: 3 MNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MN ++ IL+ Y + KK GQNF+++ I++KIA S + + VIEIG G G Sbjct: 1 MNKPIATMARTNEILAKYDLYAKKNFGQNFIIEPGIVEKIARLSHADEHSAVIEIGPGIG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNI 115 LT+ L + A +V+ E D + +L D S +P+ +E++ D L+ D EK Sbjct: 61 ALTEQLARV-AGQVLAFEIDDRLIEVLADTLSDYPH-VEVVHQDFLEADLNATVEKLKTQ 118 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 + + + ANLPY I T +LF + P T++ QKEV +R TA ++ Y LS Sbjct: 119 WNQVLVCANLPYYITTPILFKIFESKADIPVI---TVMMQKEVADRFTAAVSTKDYNALS 175 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRR 234 V+ ++ + + I +F P P V S V+ F E+ + + F +RR Sbjct: 176 VIVQYQYQVQTVMKIPKTIFNPRPAVDSAVVQFTRRQPVRTARDEAQFFALVKGCFKQRR 235 Query: 235 KTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 KTL + + + LL++AG+E +LRAE ++++ F + + + + + Sbjct: 236 KTLYNNFREYLQDKDEATRLLNEAGLEPSLRAETMTLDQFLDLYEVTYETKSL 288 >gi|167561606|ref|ZP_02354522.1| dimethyladenosine transferase [Burkholderia oklahomensis EO147] gi|167568841|ref|ZP_02361715.1| dimethyladenosine transferase [Burkholderia oklahomensis C6786] Length = 275 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 13/269 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT + A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPTIARLATPDS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ LK LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLKQRFGDL---LELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAHVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYTMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH P L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELQPVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 G + RAE++ ++++ R+ + Sbjct: 240 VDFDALGFDLARRAEDVDVDEYVRVAQAV 268 >gi|332291630|ref|YP_004430239.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5] gi|332169716|gb|AEE18971.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5] Length = 288 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 15/284 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K H+ + I KK++GQ+FL D ++ K IA++ + V+EIG G G LT+ L Sbjct: 12 KPHAHRDT-HDQGIKAKKHLGQHFLGDESVAKDIADTLTYVGYSHVLEIGPGTGVLTKYL 70 Query: 66 LTLGARKVIVIEKDQQFFPILKDIS----SQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 L + V++ D++ L+ + +++ D L+ D + + + I Sbjct: 71 LE-KPTHLSVMDLDRESIAYLQSAFTLEHKLNDEHFTVLEADFLRYDLDTIY-PGEQLAI 128 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 N PYNI T+++F I P + + FQKEV RI A S YG +SVL Sbjct: 129 TGNFPYNISTQIVFKTIEHKERIPEFTGM---FQKEVAARICADHGSKTYGIMSVLVQAF 185 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239 A +F + P VF P PKV S V+ I C E L K+ + AF +RRKTLR Sbjct: 186 FDAEYLFTVPPTVFIPPPKVDSGVLRLKRKEGYQDIGCTQEMLFKVVKMAFQQRRKTLRN 245 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 SLK +G + + I R E +S+++F +T +T+ DIA Sbjct: 246 SLKGMGLSDEFREREI-LTRRPEQISVQEFIALTAAITE--DIA 286 >gi|323524760|ref|YP_004226913.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001] gi|323381762|gb|ADX53853.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001] Length = 276 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 124/270 (45%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H I +K GQNFL+DL ++ I + G ++EIG G G LT+ L+ A Sbjct: 10 RHQGHIARKRFGQNFLVDLGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ LK+ LE+ DAL DF +RI+ NLPYNI Sbjct: 70 PLHAVELDRDLIGRLKNKFGDL---LELHAGDALAFDFGSLAAPGDAPSLRIVGNLPYNI 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ T+ + Q EV ER+ A+ + + RLSV+ +R D Sbjct: 127 SSPLLFHL---ATFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ P L ++ AF +RRK LR +L L Sbjct: 184 VPPEAFQPPPKVDSAIVRMIPYAPHELAPVDERVLGEVVTAAFSQRRKMLRNTLAALRDT 243 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ + ++ R+ ++ Sbjct: 244 VDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273 >gi|161611309|ref|YP_007394.2| dimethyladenosine transferase [Candidatus Protochlamydia amoebophila UWE25] gi|62900537|sp|Q6ME80|RSMA_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 284 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 13/283 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K L+ L+ I PKK + QNFL+D NI++KI +S G V+EIG GPG+LTQ + Sbjct: 5 KPSELRLFLNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAM 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRI 121 L + A V+ +EKD LK +LEI +D L E+ ++ Sbjct: 65 LEVEAH-VVAVEKDFVLARELK-RFQTPSKQLEIFCEDILMFSVEEELQSRLRDDQKAKV 122 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPY++ T +L + + SLT++ Q+EV R+TA Y ++ + Sbjct: 123 IANLPYHLTTPILAEMVVRRK---LFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFY 179 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 +K F +S + F+P+PKV S ++ P + KIT+ AF +RRK LR SL Sbjct: 180 SKPRYGFTVSRNCFYPAPKVDSAIVVLELKEPPPNIDAQVFFKITRTAFEQRRKMLRASL 239 Query: 242 KRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 K L N L G R E LS+EDF ++ + L ++ Sbjct: 240 KSLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYHELYSSE 282 >gi|328675684|gb|AEB28359.1| Dimethyladenosine transferase [Francisella cf. novicida 3523] Length = 262 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 98/266 (36%), Positives = 137/266 (51%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDMVVEIGPGLGALTRYLLCT-SNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 IE D L ++ I D LK D N+S I++I NLPYNI + +L Sbjct: 61 IEFDASVIDTLIANCQKY-GTPRIYNQDFLKFDISSLENLSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFNCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P N + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNNKALLKNYHFFEEIVKQSFAQRRKTLHNNLKYMLKERKIDPN 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|167764963|ref|ZP_02437084.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC 43183] gi|167697632|gb|EDS14211.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC 43183] Length = 265 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 138/260 (53%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ LL R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPNLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F +S HVF P Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G+ Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDPLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFIELTNQVE 256 >gi|159036383|ref|YP_001535636.1| dimethyladenosine transferase [Salinispora arenicola CNS-205] gi|157915218|gb|ABV96645.1| dimethyladenosine transferase [Salinispora arenicola CNS-205] Length = 289 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 15/279 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + + + P K +GQNF+ D N +++I ++G V+E+G G G+ Sbjct: 1 MTGLLGPAEIRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLASNDVVLEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS 116 LT LL + A V +E D L + + +H RL + + DAL+V + + Sbjct: 61 LTLALLPVAAH-VHAVEIDPVLAAALPETAVRHAGPAAARLSVHRADALRVTAGQLAD-P 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +P ++ANLPYN+ ++ + ++ P ++ QKEV +R+ A S YG SV Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSRVYGVPSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRK 235 W + + P+VF+P P V S ++ F P + + AF +RRK Sbjct: 176 KLAWYARVRAAGRVPPNVFWPVPNVDSGLVAFTRREPPGAGGSRSRVFAVVDAAFAQRRK 235 Query: 236 TLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDF 269 TLR +L +L AG++ R E+L++E F Sbjct: 236 TLRAALAGWAGGGDRAAAVLTAAGVDPGARGESLTVEQF 274 >gi|48976087|ref|NP_852139.2| dimethyladenosine transferase 1, mitochondrial [Rattus norvegicus] gi|47718050|gb|AAH70907.1| Transcription factor B1, mitochondrial [Rattus norvegicus] gi|149038492|gb|EDL92822.1| transcription factor B1, mitochondrial [Rattus norvegicus] Length = 345 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ + + K + QNFLLDL + KI +GSL + V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + +F I F P P+V V+H +P + P I + ++K+ Q F Sbjct: 194 SRLSIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A I+ LR +LS+ F + ++ D Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCD 312 >gi|81871169|sp|Q811P6|TFB1M_RAT RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|28569596|gb|AAO42744.1| mitochondrial transcription factor b1 [Rattus norvegicus] Length = 345 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ + + K + QNFLLDL + KI +GSL + V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + +F I F P P+V V+H +P + P I + ++K+ Q F Sbjct: 194 SRLSIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A I+ LR +LS+ F + ++ D Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCD 312 >gi|297616271|ref|YP_003701430.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM 12680] gi|297144108|gb|ADI00865.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM 12680] Length = 292 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 143/285 (50%), Gaps = 19/285 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L+ Y + PKK +GQ+FLLD N+L IA++ V+EIGAG G LT L Sbjct: 11 VRAVLAKYNLHPKKRLGQHFLLDHNVLTSIAKACELNQNDYVVEIGAGIGALTGYLAQE- 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------FNISSPIRIIA 123 A+ V+ IE D LK++ + N ++ + D LK++ E+ + ++ Sbjct: 70 AKGVLAIEVDPDLSEPLKEVLAGRDN-VKTLFGDILKLNIERETKQAFSLAPEASYKVCG 128 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I T ++F+ ++ P L+ Q+EV ER+ A + YG L+V+ ++ + Sbjct: 129 NLPYYITTPIIFHLLATA---PSMCWAVLMVQREVAERMLAPPGTKDYGMLTVMVRYQAE 185 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSL 241 M+ +SP+ F P P+V S VI P + K + +EAF +RRKT+ + Sbjct: 186 VEMVRRVSPNCFRPRPEVDSAVIRVTPRRARPWAIRNEDVFKGLVKEAFQRRRKTIHNIV 245 Query: 242 KRLGGENLLHQA------GIETNLRAENLSIEDFCRITNILTDNQ 280 G + A G+E R E L I++F +I + ++ + Sbjct: 246 AEFFGVDKAEAAQKLGVLGVEPKRRPETLEIDEFGKIADAFSEQE 290 >gi|315607755|ref|ZP_07882748.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574] gi|315250224|gb|EFU30220.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574] Length = 317 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 84/264 (31%), Positives = 131/264 (49%), Gaps = 13/264 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DLNI ++IA++ + G+ V+EIG G G LTQ L+T R+V +E Sbjct: 52 VKPKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEI 110 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + + II +D L++D F P + N PY+I +++ F + Sbjct: 111 DRESVAYLHETFPTLHDN--IIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQIFFKML 167 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ ++ + YG LSVL +F + VF P Sbjct: 168 DNRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDEDVFNPP 224 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + + C K++ + F +RRK LR SLK+L A Sbjct: 225 PKVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSGEFFTA 284 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 + R E L+I F +TN++ Sbjct: 285 EV-MTRRPEQLTIAQFVELTNVVE 307 >gi|189425372|ref|YP_001952549.1| dimethyladenosine transferase [Geobacter lovleyi SZ] gi|189421631|gb|ACD96029.1| dimethyladenosine transferase [Geobacter lovleyi SZ] Length = 271 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 94/266 (35%), Positives = 140/266 (52%), Gaps = 14/266 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K +GQNFL D NI++KI ++ V+E+G G G LT+ LL AR ++ +E D Sbjct: 7 RPRKALGQNFLSDHNIIRKILTTAHLQPTDRVLEVGPGRGALTE-LLAAQARHLVAVEFD 65 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + +L++ + P ++ I + D L+VDFE+ S +++ANLPYNI T +LF ++ Sbjct: 66 RDLAALLRERFAGQP-QVMIHEQDILQVDFEQLLG-SHTYKVVANLPYNISTPVLFRFLE 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + L ++ QKEVGER+ AQ + YG L+VL + F + P FFP P Sbjct: 124 ERQ---RFSRLVVMLQKEVGERLAAQPDCSDYGILTVLFRQWFEVKREFLVPPGCFFPPP 180 Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLH 251 KV S VI P +++ + AFG RRKTL LK G E LL Sbjct: 181 KVDSVVISLTPLVASRVEVGNQALFERLVKAAFGMRRKTLWNCLKSGGLAEPEQLEQLLL 240 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 I+ R E L+IE+F ++ L+ Sbjct: 241 SCSIDGRRRGETLAIEEFALLSRTLS 266 >gi|38233472|ref|NP_939239.1| dimethyladenosine transferase [Corynebacterium diphtheriae NCTC 13129] gi|62900542|sp|Q6NIA2|RSMA_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|38199732|emb|CAE49392.1| Putative dimethyladenosine transferase [Corynebacterium diphtheriae] Length = 295 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 22/282 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNF+ D N ++ I ++ VIE+G G G+LT LL Sbjct: 14 EIRQLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLTLALLDT 73 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KV +E D + L + + Q +RL +I DAL V + +I P ++AN Sbjct: 74 -AQKVTAVEIDPRLAQQLPLTVAERAGQFADRLNLIHKDALTVAPD---DIDHPTALVAN 129 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EV +R+ A + YG SV + Sbjct: 130 LPYNVSVPVLLHLL---QIFPTIRRVLVMVQAEVADRLAADPGNKVYGVPSVKASFYGNV 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIH---FIPHLNPIPCCLE---SLKKITQEAFGKRRKTLR 238 I +VF+P+PK+ S ++ F P P P + ++ + AF +RRKTLR Sbjct: 187 RRAGSIGKNVFWPAPKIESGLVRIDVFDPEHQPWPVTDDMRKAVFPLIDSAFAQRRKTLR 246 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 +L G E L AGI+ LR E L I DF R+ + Sbjct: 247 AALSGHFGSGPAAEEALRTAGIDPILRGEKLDIADFVRLARV 288 >gi|330465668|ref|YP_004403411.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Verrucosispora maris AB-18-032] gi|328808639|gb|AEB42811.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Verrucosispora maris AB-18-032] Length = 290 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 130/277 (46%), Gaps = 15/277 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+LT LL Sbjct: 8 PAEIRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTGDDVALEVGPGLGSLTLALL 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 + A V +E D L D +++H RL + DAL++ + + +P ++ Sbjct: 68 PVAAH-VHAVEIDPTLAAALPDTAARHAGPHAARLTVHHADALRITGAELTD-PAPTALV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + ++ P ++ QKEV +R+ A S YG SV W Sbjct: 126 ANLPYNVAVPVVLHLLA---VLPSLRHGLVMVQKEVADRLVAGPGSKVYGIPSVKLAWYA 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLR--- 238 A + P+VF+P P V S ++ F P E + + AF +RRKTLR Sbjct: 183 HARAAGKVPPNVFWPVPNVDSGLVAFTRREPPRADVPREQVFAVVDAAFAQRRKTLRAAL 242 Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 + L AG++ R E+L++E F + Sbjct: 243 AGWAGGADRAAAALTAAGVDPGARGESLTVEQFAAVA 279 >gi|126439976|ref|YP_001057747.1| dimethyladenosine transferase [Burkholderia pseudomallei 668] gi|126452897|ref|YP_001064991.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a] gi|167844380|ref|ZP_02469888.1| dimethyladenosine transferase [Burkholderia pseudomallei B7210] gi|242317237|ref|ZP_04816253.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b] gi|254196635|ref|ZP_04903059.1| dimethyladenosine transferase [Burkholderia pseudomallei S13] gi|166221655|sp|A3NRM0|RSMA_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221656|sp|A3N5X6|RSMA_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126219469|gb|ABN82975.1| dimethyladenosine transferase [Burkholderia pseudomallei 668] gi|126226539|gb|ABN90079.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a] gi|169653378|gb|EDS86071.1| dimethyladenosine transferase [Burkholderia pseudomallei S13] gi|242140476|gb|EES26878.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b] Length = 275 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ + LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGGEPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ ++++ R+ + + Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272 >gi|206559290|ref|YP_002230051.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315] gi|226729763|sp|B4EBE8|RSMA_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|198035328|emb|CAR51203.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315] Length = 275 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L +I AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEIVSAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++S+ ++ + L Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|212278071|gb|ACJ23050.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEI G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEISPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|295425701|ref|ZP_06818388.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM 11664] gi|295064717|gb|EFG55638.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM 11664] Length = 292 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + I++ Y + KK +GQNFL+D N + I ++ +G VIEIG G G+LT+ LL G Sbjct: 13 TQAIINRYFVKAKKNLGQNFLVDQNAILGIVNAADIQEGDQVIEIGPGIGSLTEQLLLHG 72 Query: 70 ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV E D IL++ R ++ D L+ DF+K FF+ S PI Sbjct: 73 A-KVFAYEVDDSLPKILQNELPAKIGDQPLDQRFHLLLKDVLQADFKKDIGAFFDFSQPI 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ S YG L++ T Sbjct: 132 KVVANLPYYITTPIIFALAESDL---RFASLTLMMQKEVAERLEAKTGSKAYGPLTIATQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLR 238 R + + F P PKV S+V+ P + + K+ + F +RRKTL Sbjct: 189 TRMHVELALQVDHTSFMPRPKVDSSVVVLTPIEHKPDVGRRAHFNKVVKMCFAQRRKTLN 248 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L + L+ G++ +R E+L+I F +I N + Sbjct: 249 NNLKNLIPDADKRAELIASLGVDPKIRPEDLTIAQFIKIANAIA 292 >gi|86130919|ref|ZP_01049518.1| dimethyladenosine transferase [Dokdonia donghaensis MED134] gi|85818330|gb|EAQ39490.1| dimethyladenosine transferase [Dokdonia donghaensis MED134] Length = 288 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 12/269 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + KK++GQ+FL D ++ + I ++ ++EIG G G LT+ +L A ++ V+ Sbjct: 22 QGVKAKKHLGQHFLGDESVARDIGDTLTLEGYKHILEIGPGTGVLTKYILAKPA-QLTVM 80 Query: 77 EKDQQFFPILKDIS----SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 + D + L+ + + +++ D LK D + + P+ I N PYNI T+ Sbjct: 81 DLDTESIEYLRSSFTLEHKLNDEKFTVLEADFLKYDLDTIY-PGEPLAITGNFPYNISTQ 139 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F I P + + FQKEV RI A S YG LSVL A +F + P Sbjct: 140 IVFKTIEHKERIPEFTGM---FQKEVAARICADHGSKTYGILSVLAQAFYDAEYLFTVPP 196 Query: 193 HVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S V+ N I C E L K+ + AF +RRKTLR SLK +G + Sbjct: 197 TVFIPPPKVDSGVLRLKRKENFKDIGCTEEMLFKVVKMAFQQRRKTLRNSLKGMGLSDCF 256 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 ++ I N R E +S++ F +T +T + Sbjct: 257 RESEI-LNKRPEQISVQGFIELTAAITKD 284 >gi|325518852|gb|EGC98422.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Burkholderia sp. TJI49] Length = 275 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIARLTQRFGAL---LELHAGDALAFDFRSLAAPGDAPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGELVTAAFSQRRKMLRNTLGDYRDA 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++S+ ++ +T L Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVTQALA 269 >gi|208778952|ref|ZP_03246298.1| dimethyladenosine transferase [Francisella novicida FTG] gi|208744752|gb|EDZ91050.1| dimethyladenosine transferase [Francisella novicida FTG] Length = 262 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + VIEIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKRHDIVIEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|227894433|ref|ZP_04012238.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047] gi|227863803|gb|EEJ71224.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047] Length = 294 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 20/286 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + I++ Y + KK +GQNFL+D N + I E++ G VIEIG G G+LT+ LL G Sbjct: 13 TRAIINRYFVKAKKNLGQNFLVDQNAILGIVEAANIQSGDQVIEIGPGIGSLTEQLLLAG 72 Query: 70 ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV E D IL + R ++ D LK +FEK FF++ PI Sbjct: 73 A-KVFAYEVDDSLPEILHNELPKKIDGEPLEARFKLTLKDVLKANFEKDLTGFFDMGKPI 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 132 KVVANLPYYITTPIIFVLAESDLH---FTSLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLR 238 + ++ F P P+V S+V+ P P + + + F +RRKTL Sbjct: 189 TEMNVRLALEVKNTSFMPRPRVDSSVVVLTPLKDKPAIENRKHFIWVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +LK L + +L+ + ++ +R E+LSIE F I + N Sbjct: 249 NNLKTLIPDTDQRADLIKKLDVDPRIRPEDLSIEQFIEIARNIPSN 294 >gi|300858098|ref|YP_003783081.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis FRC41] gi|300685552|gb|ADK28474.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis FRC41] gi|302205822|gb|ADL10164.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis C231] gi|302330381|gb|ADL20575.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis 1002] gi|308276057|gb|ADO25956.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis I19] Length = 290 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 133/283 (46%), Gaps = 22/283 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF+ D N ++ I ++ V+EIG G G+LT LL Sbjct: 12 PAEIRHLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLTADDHVVEIGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 AR V +E D + L + + +RL ++ DAL+V E+ P ++ Sbjct: 72 DT-ARSVTAVEIDPRLAEQLPMTVAERAPMFSDRLTLVHKDALQVTAEEI---GQPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L +++ P + + ++ Q EV +R+ AQ + YG SV + Sbjct: 128 ANLPYNVSVPVLLHFL---QIFPSIQRVLVMVQAEVADRLAAQPGTKVYGVPSVKASFYG 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIH---FIPHLNPIPCCLE---SLKKITQEAFGKRRKT 236 I +VF+P+PK+ S ++ F P E + + AF +RRKT Sbjct: 185 SVRRAGSIGKNVFWPAPKIESGLVRIDVFTQDNQPWEVGDELRSQVFPLIDAAFAQRRKT 244 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 LR +L G E+ L AGI+ LR E L + DF R+ Sbjct: 245 LRAALSGYYGSGAAAESALLGAGIDPTLRGEKLDVADFVRLAQ 287 >gi|218509347|ref|ZP_03507225.1| dimethyladenosine transferase [Rhizobium etli Brasil 5] Length = 215 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 114/216 (52%), Positives = 153/216 (70%), Gaps = 1/216 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KVI +E+D + P L +I +P RLE+I+ DALK DFE P++ Sbjct: 61 LTRAILALGAKKVIAVERDARCLPALAEIGDHYPGRLEVIEGDALKTDFESLAPEG-PVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 RT+A + FD+ P F P PKVTSTV+H P NPIP Sbjct: 180 RTEARLAFDVPPQAFTPPPKVTSTVVHLTPRENPIP 215 >gi|260171826|ref|ZP_05758238.1| dimethyladenosine transferase [Bacteroides sp. D2] gi|315920138|ref|ZP_07916378.1| dimethyladenosine transferase [Bacteroides sp. D2] gi|313694013|gb|EFS30848.1| dimethyladenosine transferase [Bacteroides sp. D2] Length = 266 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R + V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ I Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+ +F +TN + + Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257 >gi|122095936|sp|Q1A705|TFB1M_HARVE RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|83032436|gb|ABB97064.1| mitochondrial transcription factor B-like protein [Hartmannella vermiformis] Length = 343 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 100/335 (29%), Positives = 161/335 (48%), Gaps = 54/335 (16%) Query: 1 MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MTM ++ ++ + + K+ + QNFLLDLNI KI SSG L TVIE+G GPG Sbjct: 1 MTMRLPPLPTIGELIRLFGLSAKQQLSQNFLLDLNITDKIVRSSGDLTNKTVIEVGPGPG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN------------------------ 95 LT+ +L GA+K++VIEKD++F P L+ + N Sbjct: 61 GLTRSILKAGAKKLVVIEKDRRFLPALEVLRHAAGNIDGSPWEEAFLTKSEMDAKRYMSY 120 Query: 96 -----RLEIIQDDALKVDFEKF---------------FNISSPIRIIANLPYNIGTRLLF 135 R++I+ +D L+VD ++ + +PI II NLP+ I T L Sbjct: 121 APNKSRMQIVMNDVLRVDEQEILQHIHAPIDSNDKTQWENMAPITIIGNLPFAISTELTI 180 Query: 136 NWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 W+ + L+FQKEV +R+ A + Y RL+V+T + DI Sbjct: 181 KWLKQIQGRHGAFRFGRAEFILMFQKEVADRLIANPGTKQYSRLTVMTQQLCSVKKLSDI 240 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 F P P V ++++ +P + P+ + +L+ + ++ FG+RRK + S+K LG E Sbjct: 241 PGSAFVPKPDVDASLVSMVPRVTPLGVNVPTPTLEYVCRQVFGQRRKMINNSVKTLGPEA 300 Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LL +A I+ LR E L++ +C + ++ Sbjct: 301 EILLARAHIDPTLRPEQLTVPQWCDLARAYQQWEN 335 >gi|212278073|gb|ACJ23051.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEI G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIDPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|167814329|ref|ZP_02446009.1| dimethyladenosine transferase [Burkholderia pseudomallei 91] Length = 275 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ + LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPYELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ ++++ R+ + + Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272 >gi|269302858|gb|ACZ32958.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN] Length = 277 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 144/279 (51%), Gaps = 14/279 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + L +LS + PKK + QNFL+D NI+KKI +S + V+EIG G G Sbjct: 1 MTRSSPA-QLSRLLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ GA +VI IEKD F P L+++ P RLEII +D + + R Sbjct: 60 LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T LL P FW+++T++ Q EV RI AQ YG L++ + Sbjct: 115 VVANLPYHITTPLLTKLFLEA--PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQF 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238 F +S F+P P+V S VIH E +T+ AF +RRK L Sbjct: 173 FADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPLSDEEIPVFFTLTRTAFQQRRKVLA 232 Query: 239 QSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L E L + G+ N+R E LS+ D+ + Sbjct: 233 NTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLALF 271 >gi|115352811|ref|YP_774650.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD] gi|122322257|sp|Q0BC07|RSMA_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115282799|gb|ABI88316.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD] Length = 276 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGELVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++S+ ++ + L + A Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALAARRKAA 275 >gi|319901130|ref|YP_004160858.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108] gi|319416161|gb|ADV43272.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108] Length = 271 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + GI V+E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPGIPVLEVGPGMGVLTQFLV-RKERPVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q II+DD LK++ ++ FN +P + N PYNI +++ F + Sbjct: 63 DFESVAYLRETYPQLEE--HIIEDDFLKMNLQRLFN-GNPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L K +F + HVF P Sbjct: 120 ENKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNETQHLGCNEQLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFINLTNQVE 256 >gi|294778235|ref|ZP_06743661.1| dimethyladenosine transferase [Bacteroides vulgatus PC510] gi|294447863|gb|EFG16437.1| dimethyladenosine transferase [Bacteroides vulgatus PC510] Length = 280 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 136/269 (50%), Gaps = 12/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLSIAKDIADTVNVCPDLPILEVGPGMGVLTQFIMQKN-RPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ EK F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L K +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K+ + F +RRKTLR S+ + + Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSTDPIF 236 Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282 N R E LS+++F +TN L + DI Sbjct: 237 NKRPEQLSVQEFIELTNQVEAALKNKTDI 265 >gi|289209141|ref|YP_003461207.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix] gi|288944772|gb|ADC72471.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix] Length = 263 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 122/259 (47%), Gaps = 9/259 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D +L +I + V+EIG G G LT LL R ++ +E D+ Sbjct: 9 RKRFGQNFLHDQAVLARIVGAIAPRPDDPVLEIGPGRGALTGALLERLNR-LVAVEIDRD 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISA 140 L+ + P RLE+ DAL +D R++ NLPYNI T LLF+ + Sbjct: 68 LVAGLRAAFA--PERLELHVGDALDLDLASLGPPPEGGWRVVGNLPYNISTPLLFHLLDQ 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + L Q+EV ER+TA S YGRL+V+ R +A +F + P F P PK Sbjct: 126 MEA---VRDMHFLLQREVVERMTAVPGSKTYGRLTVMLAARARAQSLFGVPPGAFHPPPK 182 Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 V S V+ P P+ K+ +AF RRKTLR+ L L + A ++ Sbjct: 183 VHSAVVRITPLEAPLVDSALYPVFAKVVNQAFSSRRKTLRRGLSGLVDAARIEAAQLDPG 242 Query: 259 LRAENLSIEDFCRITNILT 277 R E + + F + ++ Sbjct: 243 ARPETVDVHGFAALARMVA 261 >gi|298480326|ref|ZP_06998524.1| dimethyladenosine transferase [Bacteroides sp. D22] gi|298273607|gb|EFI15170.1| dimethyladenosine transferase [Bacteroides sp. D22] Length = 266 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R + V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ I Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+ +F +TN + + Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257 >gi|189468116|ref|ZP_03016901.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM 17393] gi|189436380|gb|EDV05365.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM 17393] Length = 271 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 137/260 (52%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ G+ V+E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDVCPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ ++ FN P + N PYNI +++ F + Sbjct: 63 DYESVAYLREEYPSLEDN--IIEDDFLKMNLQRLFN-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L + +F + HVF P Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ + Sbjct: 177 PKVKSAVIRMTRNETQDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS++ F +TN + Sbjct: 237 NKRPEQLSVQQFTDLTNRVE 256 >gi|160886818|ref|ZP_02067821.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483] gi|156107229|gb|EDO08974.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483] Length = 266 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R + V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ +P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GTPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ I Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+ +F +TN + + Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257 >gi|53718304|ref|YP_107290.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243] gi|53725018|ref|YP_102046.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344] gi|67641454|ref|ZP_00440232.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4] gi|76809493|ref|YP_332287.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b] gi|121600269|ref|YP_994030.1| dimethyladenosine transferase [Burkholderia mallei SAVP1] gi|124384045|ref|YP_001028306.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229] gi|126450922|ref|YP_001081950.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247] gi|134279776|ref|ZP_01766488.1| dimethyladenosine transferase [Burkholderia pseudomallei 305] gi|167002705|ref|ZP_02268495.1| dimethyladenosine transferase [Burkholderia mallei PRL-20] gi|167718167|ref|ZP_02401403.1| dimethyladenosine transferase [Burkholderia pseudomallei DM98] gi|167737198|ref|ZP_02409972.1| dimethyladenosine transferase [Burkholderia pseudomallei 14] gi|167909608|ref|ZP_02496699.1| dimethyladenosine transferase [Burkholderia pseudomallei 112] gi|167917623|ref|ZP_02504714.1| dimethyladenosine transferase [Burkholderia pseudomallei BCC215] gi|217420008|ref|ZP_03451514.1| dimethyladenosine transferase [Burkholderia pseudomallei 576] gi|237810897|ref|YP_002895348.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346] gi|254176730|ref|ZP_04883387.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399] gi|254203732|ref|ZP_04910092.1| dimethyladenosine transferase [Burkholderia mallei FMH] gi|254208707|ref|ZP_04915055.1| dimethyladenosine transferase [Burkholderia mallei JHU] gi|254260055|ref|ZP_04951109.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a] gi|254360240|ref|ZP_04976510.1| dimethyladenosine transferase [Burkholderia mallei 2002721280] gi|62900499|sp|Q62MM2|RSMA_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62900502|sp|Q63X76|RSMA_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122064287|sp|Q3JVW6|RSMA_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221652|sp|A3MNW4|RSMA_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221653|sp|A2S8N7|RSMA_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221654|sp|A1V727|RSMA_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52208718|emb|CAH34654.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243] gi|52428441|gb|AAU49034.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344] gi|76578946|gb|ABA48421.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b] gi|121229079|gb|ABM51597.1| dimethyladenosine transferase [Burkholderia mallei SAVP1] gi|124292065|gb|ABN01334.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229] gi|126243792|gb|ABO06885.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247] gi|134248976|gb|EBA49058.1| dimethyladenosine transferase [Burkholderia pseudomallei 305] gi|147745244|gb|EDK52324.1| dimethyladenosine transferase [Burkholderia mallei FMH] gi|147750583|gb|EDK57652.1| dimethyladenosine transferase [Burkholderia mallei JHU] gi|148029480|gb|EDK87385.1| dimethyladenosine transferase [Burkholderia mallei 2002721280] gi|160697771|gb|EDP87741.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399] gi|217397312|gb|EEC37328.1| dimethyladenosine transferase [Burkholderia pseudomallei 576] gi|237505952|gb|ACQ98270.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346] gi|238522393|gb|EEP85837.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4] gi|243061644|gb|EES43830.1| dimethyladenosine transferase [Burkholderia mallei PRL-20] gi|254218744|gb|EET08128.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a] Length = 275 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ + LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ ++++ R+ + + Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272 >gi|167822806|ref|ZP_02454277.1| dimethyladenosine transferase [Burkholderia pseudomallei 9] gi|167892894|ref|ZP_02480296.1| dimethyladenosine transferase [Burkholderia pseudomallei 7894] gi|226196710|ref|ZP_03792290.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan 9] gi|254187683|ref|ZP_04894195.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur 52237] gi|254296205|ref|ZP_04963662.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e] gi|157805832|gb|EDO83002.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e] gi|157935363|gb|EDO91033.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur 52237] gi|225931241|gb|EEH27248.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan 9] Length = 275 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ + LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAPIVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ ++++ R+ + + Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272 >gi|241668930|ref|ZP_04756508.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877462|ref|ZP_05250172.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843483|gb|EET21897.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 262 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ +L + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILK-CSDNVNV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134 +E D L ++ ++ +D LK D + + ++++ NLPYNI + +L Sbjct: 61 VEFDASVIDTLLQNCQKY-GEPKVFNEDFLKFDLDIVRADSQQKLKLVGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI +Q NS YGRLSV+ + +M+ +I P V Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P ++ + + I +++F +RRKTL +LK + E ++ Sbjct: 177 FYPQPKVDSAILRLKPKVDKLVVNDYVFFENIVKQSFAQRRKTLHNNLKGILKEFDINPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++T LRAENLS+EDF + N Sbjct: 237 ALPVDTKLRAENLSVEDFVSLANFFK 262 >gi|189461759|ref|ZP_03010544.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136] gi|189431519|gb|EDV00504.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136] Length = 262 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 92/260 (35%), Positives = 136/260 (52%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + K IA++ + + ++E+G G G LTQ L+ G R V V+E Sbjct: 4 VKPKKFLGQHFLKDLQVAKDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ ++ + II+ D LK+D FN +P + N PYNI +++ F + Sbjct: 63 DFESVAYLRENFAELGDN--IIEQDFLKMDLSALFN-GNPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A + YG LSVL K +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAACPGNKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K+I + F +RRKTLR S+ + + A Sbjct: 177 PKVKSAVIRMTRNETKELGCNEKLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+EDF +TN + Sbjct: 237 NKRPEQLSVEDFIELTNRVE 256 >gi|307728472|ref|YP_003905696.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003] gi|307583007|gb|ADN56405.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003] Length = 276 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H I +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ A Sbjct: 10 RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ LK+ LE+ DAL DF +RI+ NLPYNI Sbjct: 70 PLHAVELDRDLIGRLKNRFGAL---LELHAGDALAFDFGSLAAPGDAPSLRIVGNLPYNI 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ ++ + Q EV ER+ A+ + + RLSV+ +R D Sbjct: 127 SSPLLFHL---TSFAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP P L ++ AF +RRK LR +L L G Sbjct: 184 VPPEAFQPPPKVDSAIVRMIPFAPHELAPVDERVLGEVVTAAFSQRRKMLRNTLAGLRGT 243 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++ + ++ R+ ++ Sbjct: 244 VDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273 >gi|269125239|ref|YP_003298609.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183] gi|268310197|gb|ACY96571.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183] Length = 316 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 17/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF++D N +++I + + V+E+G G G+LT LL Sbjct: 10 PAEVRELAARLGVRPTKTLGQNFVIDANTVRRIVREADLDETDVVVEVGPGLGSLTLALL 69 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 ++V+ IE D L + + + +RLE++ DAL+V P ++ Sbjct: 70 ER-VQRVVAIEIDPVLAGQLPHTVRRRAPRLADRLEVVHADALRVTE---LPGPPPTALV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + ++A P ++ Q EV ER+ A+ YG SV W Sbjct: 126 ANLPYNVAVPVVLHLLAA---FPTLRRGLVMVQAEVAERLVARPGGKVYGVPSVKLAWHA 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 A + VF+P P V S ++ F P+ E + + AF +RRKTLR +L Sbjct: 183 HARRAGPVGRAVFWPVPNVDSALVAFTRRAEPVAQVSREEVFAVIDAAFAQRRKTLRAAL 242 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E +L AG++ R E L + F RI Sbjct: 243 AGWAGSAEAAERVLRAAGVDPKARGEALDVAAFARIAQY 281 >gi|170699175|ref|ZP_02890228.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10] gi|170135900|gb|EDT04175.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10] Length = 276 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++S+ ++ + L + A Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALAAVRKAA 275 >gi|237719828|ref|ZP_04550309.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4] gi|229451097|gb|EEO56888.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4] Length = 266 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 137/261 (52%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKD---IVLCCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ I Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+ +F +TN + + Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257 >gi|227548244|ref|ZP_03978293.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079667|gb|EEI17630.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM 44291] Length = 284 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 80/275 (29%), Positives = 133/275 (48%), Gaps = 15/275 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + + S + P K +GQNF+ D N +++I ++ V+E+G G G+LT L+ Sbjct: 11 EVHQLASELGVTPTKKLGQNFVHDPNTVRRIVAAAKLNADDVVVEVGPGLGSLTLGLVDS 70 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 V+ +E D + L ++ + RLE++ DAL+V + P ++AN Sbjct: 71 -VSHVVALEIDPRLAGRLARTVEERADAFATRLEVVCADALRVRRSDVSHA--PTALVAN 127 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ QKEV +R+ A+ S YG SV + + Sbjct: 128 LPYNVSVPVLLHLLEE---FPTIRRVLVMVQKEVADRLAAEPGSKIYGVPSVKAAFYGRV 184 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 T I +VF+P+P + S ++ S+ + AF +RRKTLR +L + Sbjct: 185 TRAGTIGKNVFWPAPNIESGLVRIDVDPKVDRTLRASVFPLVDAAFAQRRKTLRSTLAGV 244 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AGI+ LR E LS++DF R+ Sbjct: 245 YGSPVAAEQALVAAGIDPGLRGEKLSVDDFVRLAR 279 >gi|107023643|ref|YP_621970.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054] gi|116690728|ref|YP_836351.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424] gi|170734070|ref|YP_001766017.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3] gi|122064286|sp|Q1BTQ8|RSMA_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221651|sp|A0KAD1|RSMA_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729762|sp|B1JY71|RSMA_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|105893832|gb|ABF76997.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054] gi|116648817|gb|ABK09458.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424] gi|169817312|gb|ACA91895.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3] Length = 275 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 120/270 (44%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L +I AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEIVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++S+ ++ + L Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269 >gi|187477205|ref|YP_785229.1| dimethyladenosine transferase [Bordetella avium 197N] gi|122064284|sp|Q2KXA2|RSMA_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115421791|emb|CAJ48302.1| dimethyladenosine transferase [Bordetella avium 197N] Length = 262 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 11/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQ+FL D +++ I + ++EIG G LT L+ R + V+E Sbjct: 3 QHQARKRFGQHFLTDESVIDAIVRAIAPARDDAIVEIGPGLSALTAPLIARLNR-LSVVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ P +L +++ DAL VDF +F + +R++ NLPYNI + LLF+ Sbjct: 62 IDRDLAARLRKKYP--PEQLSVVEADALTVDFRQF---GAGMRVVGNLPYNISSPLLFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + A + Q+EV +R+ A+ S YGRLSV+ R + +FD+ P F P Sbjct: 117 MGAAD---LVRDQHFMLQREVIDRMVAEPRSADYGRLSVMLQSRYRMEKLFDVPPEAFDP 173 Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S V+ +P P P + + + AF +RRK LR+ L G+ Sbjct: 174 PPRVVSAVVRMVPLGPDRPQPASEAAFEAVVARAFSQRRKMLRRGLGDWAAHVPWDDIGV 233 Query: 256 ETNLRAENLSIEDFCRITNIL 276 RAE + + F R+T+ L Sbjct: 234 PPTARAEEVGVAQFIRLTDAL 254 >gi|254882792|ref|ZP_05255502.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA] gi|319643892|ref|ZP_07998475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A] gi|254835585|gb|EET15894.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA] gi|317384509|gb|EFV65475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A] Length = 280 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 136/269 (50%), Gaps = 12/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL+I K IA++ + ++E+G G G LTQ ++ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQKN-RPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ EK F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L K +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + C E L K+ + F +RRKTLR S+ + + Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSTDPIF 236 Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282 N R E LS+++F +TN L + DI Sbjct: 237 NKRPEQLSVQEFIELTNQVEAALKNKTDI 265 >gi|254181754|ref|ZP_04888351.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655] gi|184212292|gb|EDU09335.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655] Length = 275 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLAAPGS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ + LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ ++++ R+ + + Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272 >gi|89892881|ref|YP_516368.1| hypothetical protein DSY0135 [Desulfitobacterium hafniense Y51] gi|219666144|ref|YP_002456579.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2] gi|119365023|sp|Q251W8|RSMA_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807864|sp|B8FY38|RSMA_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89332329|dbj|BAE81924.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536404|gb|ACL18143.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2] Length = 278 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 146/286 (51%), Gaps = 15/286 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N ++ + IL K +GQNFL+D +++ IA +S I V+EIG G G LT Sbjct: 1 MENAANYTRRIL-KGGAKAHKSLGQNFLMDDRVIEAIAAASIKDPEIPVVEIGPGLGVLT 59 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 ++L A+KV +E D+ +L+ P ++I+ DALK+D + + + ++ Sbjct: 60 RVLA-QKAQKVWAVELDRGKVNLLQRELQGLP--VDILNMDALKLDLKDIWGTGKGV-LV 115 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPY I + LL +++ S+ ++ QKEV +R+ A+ YG LS+ Sbjct: 116 GNLPYYITSPLLMHFLEQKD---SLASMVVMVQKEVADRLVAKPGGKDYGILSIAAQVSA 172 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL 241 + +F++ P F+P+PKVTS V+ F P + ++ + AF +RRKTL SL Sbjct: 173 QGEKLFEVPPQAFWPAPKVTSAVVRFELRSYPGFRVKEKDFFRVVKAAFSQRRKTLGNSL 232 Query: 242 KRLGGE------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 G +L AG++ RAE LSI++F +T + N D Sbjct: 233 AGGLGLPKQQIGEILAAAGVDEQRRAETLSIDEFQAVTEAVMKNLD 278 >gi|224538112|ref|ZP_03678651.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus DSM 14838] gi|224520240|gb|EEF89345.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus DSM 14838] Length = 271 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + G+ ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDACPGLPILEVGPGMGVLTQFLV-RKERPVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREEYPSLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L + +F + HVF P Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ + Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFISLTNRVE 256 >gi|153807426|ref|ZP_01960094.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185] gi|149129788|gb|EDM21000.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185] Length = 266 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 135/260 (51%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDPFPELPILEVGPGMGVLTQFLVK-KERPVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G+ Sbjct: 177 PKVKSAVIRMTRNDTQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDTLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+E+F +TN + Sbjct: 237 NKRPEQLSVEEFIDLTNKVE 256 >gi|148264355|ref|YP_001231061.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4] gi|146397855|gb|ABQ26488.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4] Length = 275 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 93/270 (34%), Positives = 143/270 (52%), Gaps = 16/270 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK MGQNFL+D N+L +I ++ ++E+G G G LT +L+ A +V+ +E Sbjct: 3 KIRAKKSMGQNFLVDRNVLTRIVDAVNISAEDRILEVGPGKGALTALLVERAA-QVLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLF 135 D+Q P L + N +E +Q D LKV+ + S ++ ANLPYNI +++LF Sbjct: 62 LDRQLVPFLAREFAPQKN-VEFVQGDILKVNLSELLMDRWSGAWKVAANLPYNISSQVLF 120 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ P + L L+ QKEVG+R+ A YG LSV + + + P F Sbjct: 121 KFLDN---PKLFSLLILMLQKEVGDRLIAAPGCKDYGILSVFCRLHFDISRVLIVKPGSF 177 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR--LGGE---- 247 P PKV S V+ F+P P + +K+ + AF +RRKTL LK LG + Sbjct: 178 TPVPKVDSVVLKFVPLPAPRVDVEDESFFRKVVKAAFSQRRKTLWNCLKSSELGVDGDVL 237 Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNIL 276 +LL + GI+ + R E LS+++F +T + Sbjct: 238 LSLLTKCGIDGSRRGETLSLDEFAVLTRAI 267 >gi|198282486|ref|YP_002218807.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|226729745|sp|B5EL84|RSMA_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|198247007|gb|ACH82600.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 268 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 8/258 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK GQNFL+ I+++I + G ++EIG GPG LT+ LL L + V+E D Sbjct: 9 RAKKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRLLP-QFTVVELD 67 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L+ ++ P +L ++Q DAL+VDF + +RI+ NLPYN+ T L+F+ + Sbjct: 68 RDMIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILE 125 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEV +R+ A S YGRLSV+ +F ++P FFP P Sbjct: 126 HAEQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVP 182 Query: 200 KVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S + IPH P +I +F +RRKTL +L+ + + L I+ Sbjct: 183 KVDSAFMRLIPHRPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDP 242 Query: 258 NLRAENLSIEDFCRITNI 275 RAE L F R+ Sbjct: 243 GSRAETLDQAAFFRLAEA 260 >gi|304320043|ref|YP_003853686.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503] gi|303298946|gb|ADM08545.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503] Length = 273 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 111/279 (39%), Positives = 158/279 (56%), Gaps = 9/279 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + T++ + ++ KK +GQ+FLLD+NI +KIA G VIEIG GPG Sbjct: 1 MPPMSDLPPVGTVVRSHGLLAKKTLGQHFLLDMNITRKIAALCALSPGEDVIEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA + IE+D + PIL +IS+ P +L ++ DAL VD+ Sbjct: 61 LTRALLEAGA-ALTTIERDDRIVPILSEISAAFPGQLTPLEGDALSVDYRALMPGGG--V 117 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I +NLPYNI T LL W++ P W + L+FQ+EVG+RI A S YGRLSVL+ Sbjct: 118 IASNLPYNISTELLVRWLTLSPRP--WRRMVLMFQREVGDRILASPGSKAYGRLSVLSQI 175 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + T+ F + F P PKV S+V+ F+P P + +L+++T AFG+RRK +R++ Sbjct: 176 AARPTLGFHLPARAFTPPPKVASSVLVFLPPATE-PQNVAALERVTAAAFGQRRKMIRKT 234 Query: 241 LKRLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276 L L GE LL G+ RAE LS+E F + L Sbjct: 235 LAPLYGEKLGPLLDGLGLLPTQRAEELSVETFRALAEAL 273 >gi|257066995|ref|YP_003153251.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548] gi|256798875|gb|ACV29530.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548] Length = 280 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +K I+ Y K +GQNFL+D N ++KI +++ D V+EIG G G Sbjct: 1 MKKLYSPKVVKDIIDLYNFRFSKSLGQNFLIDKNFVEKIVDAADV-DSSNVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 +T + A+KV+ IE D PI+ + + N ++I +D LK D + Sbjct: 60 ITYEMAKT-AKKVVAIEIDSSLIPIIGENMEEFDN-FKLIHEDILKADLGRIIEEEFAGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPY I T ++ I D +T++ QKEV +R+ A + S Y LSV Sbjct: 118 DFKVVSNLPYYITTPIIEKLIETDLP---CRDMTIMVQKEVADRMLADEKSKDYSSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + A + ++ VF P PK+ STV+ + L + F KRRKT+ Sbjct: 175 IKYYSDAEKITNVPKSVFMPQPKIDSTVLKLNLRKYRDDVDEKKLFALVHAGFNKRRKTI 234 Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277 SL + + GI+ NLRAENLS++DF +T + Sbjct: 235 LNSLSDACEKEKLRLAFDKLGIKNNLRAENLSLDDFINLTKTIE 278 >gi|218666666|ref|YP_002424676.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|254807853|sp|B7J3R3|RSMA_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218518879|gb|ACK79465.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 267 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 8/258 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK GQNFL+ I+++I + G ++EIG GPG LT+ LL L + V+E D Sbjct: 8 RAKKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRLLP-QFTVVELD 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L+ ++ P +L ++Q DAL+VDF + +RI+ NLPYN+ T L+F+ + Sbjct: 67 RDMIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILE 124 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEV +R+ A S YGRLSV+ +F ++P FFP P Sbjct: 125 HAEQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVP 181 Query: 200 KVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S + IPH P +I +F +RRKTL +L+ + + L I+ Sbjct: 182 KVDSAFMRLIPHRPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDP 241 Query: 258 NLRAENLSIEDFCRITNI 275 RAE L F R+ Sbjct: 242 GSRAETLDQAAFFRLAEA 259 >gi|58336557|ref|YP_193142.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM] gi|227903108|ref|ZP_04020913.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796] gi|62900454|sp|Q5FMG3|RSMA_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58253874|gb|AAV42111.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM] gi|227869094|gb|EEJ76515.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796] Length = 294 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 20/281 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y + KK +GQNFL+D + + I E++ G VIEIG G G+LT+ LL G Sbjct: 13 TKAIINRYFVKAKKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAG 72 Query: 70 ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV E D IL + +R +++ D LK DF+ FF++ PI Sbjct: 73 A-KVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQPI 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D + SLTL+ QKEV ER+ A+ + YG L++ Sbjct: 132 KVVANLPYYITTPIIFALSESDLH---FSSLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLR 238 + ++ F P PKV S+V+ P P + + + F +RRKTL Sbjct: 189 TEMNVKIALEVKSTSFMPRPKVDSSVVVLTPLQERPKIENRKHFIWVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 +LK L E L+ + G++ +R E+L+I+ F I Sbjct: 249 NNLKALIPNAKEREALISKLGVDPRVRPEDLTIDQFIEIAR 289 >gi|197118669|ref|YP_002139096.1| dimethyladenosine transferase [Geobacter bemidjiensis Bem] gi|197088029|gb|ACH39300.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase [Geobacter bemidjiensis Bem] Length = 275 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 17/278 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK GQNFL+D ++L +I ++E+G G G L+++L GAR + +E Sbjct: 3 KIRAKKEFGQNFLVDDSVLTRIVACVAPTKDDCILEVGPGRGALSRLLAESGAR-FLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134 D++ P+LK + +PN +EI D L+VD ++ ANLPYNI +++L Sbjct: 62 WDRELLPLLKAEFATNPN-VEIGHGDILRVDLPLLLGSRAEGKKWKVAANLPYNISSQVL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F ++ +E L L+ QKEVG+R+TA YG L+VL F + P Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ F+P P E +++ + AF +RRKTL SL+ G ++ Sbjct: 178 FRPVPKVDSAVLSFLPLSGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L ++GI+ R E LS+E+F +T L+ + +A Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFACLTRELSAGKTLA 275 >gi|311743178|ref|ZP_07716986.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272] gi|311313858|gb|EFQ83767.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272] Length = 309 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 18/281 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K GQNF++D N +++I SG V+EIG G G+LT LL Sbjct: 22 ATDIRRLAEQVGVRPTKQRGQNFVIDANTVRRIVRVSGVGPTDVVVEIGPGLGSLTLALL 81 Query: 67 TLGARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIAN 124 + AR+V+ +E D L ++ + P R +E++ DA++V +P ++AN Sbjct: 82 EV-ARRVVAVEIDPALAGGLPATLADRAPGRDVEVVLADAMRVTE---LPGPAPTALVAN 137 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L W A P S ++ Q EV R+ A S YG SV W + Sbjct: 138 LPYNVSVPVLLTWFEA---FPSITSGLVMVQAEVAHRLAAAPGSKIYGVPSVKAAWYAQV 194 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQS 240 + + VF+P+P V S ++ + E L++ + AF +RRKTLR + Sbjct: 195 ELAGTVGRQVFWPAPNVDSALVAWRRRPPGTELGDERLRRTTFAVVDAAFAQRRKTLRAA 254 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L L G E L AGI+ R E L + D+ R+ L Sbjct: 255 LAGLAGSPDVAEAALLAAGIDPRTRGEQLDVHDYVRLAAHL 295 >gi|227877971|ref|ZP_03995975.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01] gi|256844351|ref|ZP_05549837.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN] gi|256849246|ref|ZP_05554679.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US] gi|312978360|ref|ZP_07790102.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05] gi|227862441|gb|EEJ69956.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01] gi|256613429|gb|EEU18632.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN] gi|256714022|gb|EEU29010.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US] gi|310894703|gb|EFQ43775.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05] Length = 294 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 146/295 (49%), Gaps = 23/295 (7%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT N + I++ Y + KK +GQNFL+D + I E++G VIEIG G Sbjct: 1 MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDAL----KV 107 G+LT+ LL GA KV E D IL++ +R ++I D L KV Sbjct: 61 IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKV 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D FF+ + PI+++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ Sbjct: 120 DISDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226 S YG L++ + +S + F P PKV S+V+ P P + + Sbjct: 177 SKEYGPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + F +RRKTL +LK L + L + G+ +R E L+I+ F +I + + Sbjct: 237 KMCFSQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291 >gi|241068617|ref|XP_002408487.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis] gi|215492475|gb|EEC02116.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis] Length = 278 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 105/280 (37%), Positives = 153/280 (54%), Gaps = 15/280 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPI 119 + VIE D++ P+L +I +PN L II+ DALK++ +I + Sbjct: 63 KKPESLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSSKSIDYKV 121 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 II+NLPY+IGT L+ W+ ++TL+ QKEV ERI A ++ YGRLSV+ Sbjct: 122 TIISNLPYHIGTELVIRWLKEAR---LINNMTLMLQKEVVERICAMPSTKAYGRLSVICQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLR 238 K FD++P F+P PKV S ++ IP NP L +++IT+ AF RRK ++ Sbjct: 179 LIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIK 238 Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276 SLK L +L Q I N RAENL+ +D+ RI IL Sbjct: 239 SSLKNLVPNIHEVLTQLKINDNYRAENLTPQDYLRIAEIL 278 >gi|167901379|ref|ZP_02488584.1| dimethyladenosine transferase [Burkholderia pseudomallei NCTC 13177] Length = 275 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ L+ + LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAPVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G + RAE++ ++++ R+ + + Sbjct: 240 VDFDALGFDLARRAEDVGVDEYVRVAQAVASAR 272 >gi|300781662|ref|ZP_07091516.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC 33030] gi|300533369|gb|EFK54430.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC 33030] Length = 302 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 136/287 (47%), Gaps = 18/287 (6%) Query: 1 MTMNN--KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD---GITVIEIG 55 MT + ++ + ++ P K +GQNF+ D N +++I ++ + V+E+G Sbjct: 20 MTTSQLLGPAEIRALAEELEVSPTKKLGQNFVHDPNTVRRIVAAADLEEPGIAEMVLEVG 79 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFF 113 G G+LT L+ + A V+ +E D + L + +++ ++L ++ DAL V + Sbjct: 80 PGLGSLTLGLIDV-ANHVVAVEIDPRLAAKLPETAAERSDADKLTVLNMDALMVSYADL- 137 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P ++ANLPYN+ +L + + P + ++ Q EV +R+ A S YG Sbjct: 138 -DREPTALVANLPYNVAVPVLLHLLEE---FPSIRRVLVMVQLEVADRLAAAPGSKIYGV 193 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 SV + I +VF+P+P + S ++ + + + AF +R Sbjct: 194 PSVKASFYGDVRKAGTIGKNVFWPAPNIESGLVRIDVNETFDRSLRPKVFPLIDAAFAQR 253 Query: 234 RKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 RKTLR L + G E L AGI+ LR E LS+EDF R+ + Sbjct: 254 RKTLRACLTGVYGSGPAAEEALRAAGIDPGLRGEKLSVEDFVRLAEV 300 >gi|218283941|ref|ZP_03489809.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989] gi|218215520|gb|EEC89058.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989] Length = 289 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 15/273 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I YK+ KK GQNF+++ +++KIA ++ V EIG G G LTQ L Sbjct: 11 TKEIQEKYKVFTKKSFGQNFIIEPGVVEKIANAAIQSRDELVFEIGPGIGALTQFLCE-K 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125 + +V+ E D++ +L++ + L+I+ +D LKVD ++ F + +NL Sbjct: 70 SDQVVAFEIDERLPVVLENEIGF--DHLQIVLEDILKVDIDEKIREFRKPGQKVVFASNL 127 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +LF A+ E +T++ QKEVGER A +N Y LSV+T +R Sbjct: 128 PYYITTPILFKLFEANE---EIERITVMMQKEVGERFLAHENDKEYNALSVITQYRCDVK 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244 + D+S VF+PSP V S VI F H + + F +RRKT+ + + Sbjct: 185 KVMDVSRRVFWPSPNVDSMVIQFSFHHKYHLEDENYFFDLVKACFTQRRKTIYNNFQNFV 244 Query: 245 ----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 + LL Q I+ + RA+ ++EDF R+ Sbjct: 245 KDKTLAKQLLEQVNIDPSTRAQQCTLEDFIRLY 277 >gi|294789043|ref|ZP_06754283.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453] gi|294483145|gb|EFG30832.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453] Length = 258 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 85/260 (32%), Positives = 126/260 (48%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L T ++ V E Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDIVIEIGPGLAAITEPL-TRKLNQLHVCEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK N+L I D L+ DF +I+ NLPYNI T LLF Sbjct: 63 DRDIIQFLKK--QPFANKLVIHDGDVLQFDFRSIV---GKKKIVGNLPYNISTPLLFRL- 116 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A + YGRLSV+ + ++ ++ P F P+ Sbjct: 117 --ADVADDVIDMHFMLQKEVVERMVAVPKTNDYGRLSVMLQYFFDMELLIEVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP LN I + + +++F +RRKT+R +LK + ++ L GIE Sbjct: 175 PKVDSAVVRMIPVLNRIGKAENFKHFSDLVRDSFHQRRKTIRNNLKNIANDDDLLAVGIE 234 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE ++ E + +++N L Sbjct: 235 PQQRAEEIAPELYVKLSNYL 254 >gi|33242431|ref|NP_877372.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183] gi|33236942|gb|AAP99029.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183] Length = 277 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 143/279 (51%), Gaps = 14/279 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + L LS + PKK + QNFL+D NI+KKI +S + V+EIG G G Sbjct: 1 MTRSSPA-QLSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ GA +VI IEKD F P L+++ P RLEII +D + + R Sbjct: 60 LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYTTLGKGR 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T LL P FW+++T++ Q EV RI AQ YG L++ + Sbjct: 115 VVANLPYHITTPLLTKLFLEA--PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQF 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238 F +S F+P P+V S VIH E +T+ AF +RRK L Sbjct: 173 FADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPLSDEEIPVFFTLTRTAFQQRRKVLA 232 Query: 239 QSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L E L + G+ N+R E LS+ D+ + Sbjct: 233 NTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLALF 271 >gi|332828677|gb|EGK01369.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas gadei ATCC BAA-286] Length = 266 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 136/260 (52%), Gaps = 9/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL DL+I ++IA++ + VIE+G G G LTQ L+ R++ V+E Sbjct: 4 VKAKKFLGQHFLKDLDIARRIADTLDDFPDVPVIEVGPGMGVLTQFLIEKK-RELTVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P L + II+DD LK+D K ++ + +I N PYNI +++ F + Sbjct: 63 DRDSVPYLNEHYPALQG--HIIEDDFLKLDLLKIYD--NQFCVIGNYPYNISSQIFFKVL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + QKEV ERI A+ YG LSVL +F +S VF P Sbjct: 119 DYKNHIP---CCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPP 175 Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + C + K + + F +RRKTLR S+K L G++ Sbjct: 176 PKVKSAVVKLVRNKRQSLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCDAYTDPIF 235 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+ DF ++TNI+ Sbjct: 236 NERPERLSVADFEKLTNIVA 255 >gi|255691159|ref|ZP_05414834.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565] gi|260623254|gb|EEX46125.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565] Length = 262 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ + F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F +S HVF P Sbjct: 120 DNKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNEVQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDSLF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS+E+F +TN + + Sbjct: 237 NKRPEQLSVEEFIDLTNKVEE 257 >gi|329947570|ref|ZP_08294729.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328523885|gb|EGF50965.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 367 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 16/282 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF+ D +++I S+G TV+EIG G G+LT LL Sbjct: 69 PTEVRGLSQALGIRPTKTLGQNFVHDAGTVRRIVRSAGVRPDDTVLEIGPGLGSLTLALL 128 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120 GAR V +E D L D + RL +I+ DAL + E P R Sbjct: 129 ETGAR-VSAVEIDPVLARALPVTVADRMPEAAGRLGVIEADALSITAEALSGAEQPPPTR 187 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ +L + A P E++T++ Q EV +R+ A S YG SV W Sbjct: 188 LVANLPYNVAVPVLLTVLEA---LPSLETVTVMVQAEVADRLAAAPGSRTYGVPSVKAAW 244 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 A IS HVF+P P V S ++ + P E + + AF +RRKTLR+ Sbjct: 245 YAAARRTLTISRHVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRK 304 Query: 240 SLKRLGGENLLHQA-----GIETNLRAENLSIEDFCRITNIL 276 +L G +A GI+ R E L I F + L Sbjct: 305 ALAEAAGGADAAEAALRATGIDPTRRGETLDITAFAALAEAL 346 >gi|222528417|ref|YP_002572299.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM 6725] gi|222455264|gb|ACM59526.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM 6725] Length = 291 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 147/278 (52%), Gaps = 13/278 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 L ++L Y + P K +GQNFL+D N+++KI +G VIEIGAGPG LT L Sbjct: 16 KTELLSLLEKYGLSPNKKLGQNFLVDENVVRKII-LFSQTEGKEVIEIGAGPGTLTVYLA 74 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A+KV+ +E D++ +LKD+ PN ++I+ D L+++ + N + + ++ NLP Sbjct: 75 KT-AQKVVAVEIDKKILNVLKDVCQNLPN-VQIVNSDFLELNVKNLTN-GNKVYVVGNLP 131 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + +++LF E T++ QKEV +R+ A+ + YG L+V + + Sbjct: 132 YYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIED 188 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 F +S +VF+P P+V S V+ + + KI F RRKT+ +L Sbjct: 189 YFYVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNALSNQLD 248 Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + ++ AG++ NLRAE+LS++D+ R+ + Sbjct: 249 IAKDELKKIILMAGLDENLRAEDLSLDDYIRLYQCFEE 286 >gi|171317313|ref|ZP_02906509.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5] gi|171097512|gb|EDT42350.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5] Length = 276 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++S+ ++ + L + A Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALAAVRKAA 275 >gi|270294487|ref|ZP_06200689.1| dimethyladenosine transferase [Bacteroides sp. D20] gi|270275954|gb|EFA21814.1| dimethyladenosine transferase [Bacteroides sp. D20] Length = 264 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 139/260 (53%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ I ++E+G G G LTQ LL R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+DD LK++ ++ F + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFG-GQAFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL K +F + HVF P Sbjct: 120 EYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + + C + K++ + F +RRKTLR S+K + G++ + Sbjct: 177 PKVKSAVIRMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F ++TN + Sbjct: 237 NKRPEQLSVKEFIQLTNQVE 256 >gi|255325442|ref|ZP_05366546.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum SK141] gi|255297528|gb|EET76841.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum SK141] Length = 300 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 136/278 (48%), Gaps = 20/278 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + I+P K +GQNFL D N +++I ++ V+E+G G G+LT L+ Sbjct: 28 EIRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELDPTDRVLEVGPGLGSLTLGLVE- 86 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 V +E D + L + + ++ RL +++ DAL+V +++ P ++AN Sbjct: 87 AVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVAN 143 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EV +R+ AQ S YG SV G+ K Sbjct: 144 LPYNVAVPVLLHLLET---FPSIRRVLVMVQLEVADRLAAQPGSKVYGVPSVKAGFYGKV 200 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQS 240 + I +VF+P+P + S ++ + P P ES K + AF +RRKTLR + Sbjct: 201 SKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRSKVWPVIDAAFAQRRKTLRAA 260 Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 L G L A I+ R E L++EDF R+ Sbjct: 261 LSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLA 298 >gi|163786670|ref|ZP_02181118.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1] gi|159878530|gb|EDP72586.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1] Length = 262 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 93/267 (34%), Positives = 135/267 (50%), Gaps = 9/267 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +H ++ KK++GQ+FL D +I + IA+S V+EIG G G LT+ LL Sbjct: 2 ANHNQVKAKKHLGQHFLTDESIAQDIADSLSLEGYKDVLEIGPGMGVLTKYLLK-KETTT 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D + LK+ +R I + D LK D F P II N PYNI +++ Sbjct: 61 HVIEIDTESVEYLKNNYLNLADR--IYEKDFLKYDLNLIFK-DKPFAIIGNFPYNISSQI 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF + P + + FQKEV +RI +++ S YG LSVLT A +F + P Sbjct: 118 LFKTLELRHQIPEFSGM---FQKEVAKRICSKEGSKVYGILSVLTQAFYNADYLFTVPPT 174 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S V+ N +PC + ++ + F +RRKTLR SLK + L Sbjct: 175 VFNPPPKVDSGVLLLKRKENFKLPCDEKLFFRVVKTGFQQRRKTLRNSLKTFNLSDNLKA 234 Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279 I R E LS+ F +T+++ ++ Sbjct: 235 NTI-FGQRPEQLSVSKFIELTSLIEND 260 >gi|227537514|ref|ZP_03967563.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33300] gi|227242651|gb|EEI92666.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 10/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D N +KI ++ G V+E+G G G L+ LL + +I+ Sbjct: 4 VRAKKHLGQHFLNDKNAAQKIVDALDPKLGFSHVLEVGPGMGVLSDFLLQKPEYQTYLID 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L D + +RL I D L +DF K+F + +I N PYNI +++LF Sbjct: 64 VDDESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKI 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + +T +FQKEV ER TA+ S YG LSV +F + F P Sbjct: 120 LDERQ---RVVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTP 176 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + C + ++ + F +RRKTLR SL + ++ + + Sbjct: 177 PPKVLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPLY 236 Query: 257 TNLRAENLSIEDFCRITNILT 277 LRAE LS+EDF ++TN ++ Sbjct: 237 E-LRAERLSVEDFVQLTNEIS 256 >gi|39996962|ref|NP_952913.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA] gi|62900555|sp|Q74C12|RSMA_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39983850|gb|AAR35240.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA] Length = 276 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 90/270 (33%), Positives = 137/270 (50%), Gaps = 16/270 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I +K +GQNFL D ++L +IA + G ++EIG G G LT L A +++ +E Sbjct: 5 GIRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQ-AGQLVAVE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D + P+L+ + +P+ + II+ D L +D + + P ++ ANLPYNI T +LF Sbjct: 64 LDDRLVPLLRGSFAGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLF 122 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + A + L L+ QKEVG R+ A S YG LSVL T + P F Sbjct: 123 RLLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSF 179 Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLK-------RLGG 246 P PKV S V+ F+P P + +++ + +F RRKTL LK G Sbjct: 180 HPVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLKGGALGVPTDGI 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++L + GI+ R E LS+++F +T L Sbjct: 240 RDVLARCGIDEGRRGETLSLQEFASLTKGL 269 >gi|254373987|ref|ZP_04989469.1| dimethyladenosine transferase [Francisella novicida GA99-3548] gi|151571707|gb|EDN37361.1| dimethyladenosine transferase [Francisella novicida GA99-3548] Length = 262 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHNIVVEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS YGRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|167626494|ref|YP_001676994.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189028809|sp|B0TZ54|RSMA_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|167596495|gb|ABZ86493.1| dimethyladenosine transferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 262 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 138/271 (50%), Gaps = 19/271 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ +L + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILK-CSDNVNV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134 +E D L ++ ++ +D LK D + + +++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLLQNCQKY-GEPKVFNEDFLKFDLDIVRADSQQKLKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI +Q NS YGRLSV+ + +M+ +I P V Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F+P PKV S ++ P N + + I +++F +RRKTL +LK +L + Sbjct: 177 FYPQPKVDSAILRLKPKANKLVINDYIFFENIVKQSFAQRRKTLHNNLKG-----ILKEL 231 Query: 254 GIETN-------LRAENLSIEDFCRITNILT 277 I+ N LRAENLS+EDF + N L Sbjct: 232 DIDPNTLPVDTKLRAENLSMEDFVSLVNFLK 262 >gi|320179612|gb|EFW54561.1| Dimethyladenosine transferase [Shigella boydii ATCC 9905] gi|333010543|gb|EGK29976.1| dimethyladenosine transferase [Shigella flexneri VA-6] Length = 249 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 127/250 (50%), Gaps = 8/250 (3%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + I + G ++EIG G LT+ + ++ VIE D+ L+ Sbjct: 2 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQ-THPFLGP 59 Query: 96 RLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 +L I Q DA+ +F + + P+R+ NLPYNI T L+F+ S + + + Sbjct: 60 KLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFML 116 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN- 213 QKEV R+ A NS YGRLSV+ + + ++ P F P PKV S V+ +PH Sbjct: 117 QKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATM 176 Query: 214 PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 P P + L +IT EAF +RRKT+R SL L +L GI+ +RAEN+S+ +C++ Sbjct: 177 PHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQM 236 Query: 273 TNILTDNQDI 282 N L +N + Sbjct: 237 ANYLAENAPL 246 >gi|227888939|ref|ZP_04006744.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200] gi|227850527|gb|EEJ60613.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200] Length = 294 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 152/295 (51%), Gaps = 21/295 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + + + I++ Y + KK +GQNFL+DL +K I E++ G VIEIG G G+ Sbjct: 5 MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGS 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKV----DFE 110 LT+ LL GA KV+ E DQ IL + + +R +++ D LK D + Sbjct: 64 LTEQLLLAGA-KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDND 122 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 F ++S + I+ANLPY I T ++FN I +D + SLTL+ QKEV ER+ A+ + Sbjct: 123 GFLDLSKSVNIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAKPKTKE 179 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229 YG LS+ R + ++ F P PKV S V+ P L + + Sbjct: 180 YGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYVFFDHVVKMC 239 Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F +RRKTL +LK L E L++ G++ +R E L++ F ++ ++L D Sbjct: 240 FAQRRKTLANNLKTLIKDKNEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKDR 294 >gi|161523771|ref|YP_001578783.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] gi|189351468|ref|YP_001947096.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] gi|226729764|sp|A9AFE4|RSMA_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|160341200|gb|ABX14286.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] gi|189335490|dbj|BAG44560.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616] Length = 275 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 122/275 (44%), Gaps = 13/275 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H +K GQNFL+D ++ I + G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPET 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ LK LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIARLKQRFGAL---LELHAGDALAFDFRSLAAPGDAPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L +I AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGEIVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 G + RAE++S+ ++ + L ++ Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALAATRNA 274 >gi|145295068|ref|YP_001137889.1| dimethyladenosine transferase [Corynebacterium glutamicum R] gi|166221660|sp|A4QCP0|RSMA_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|140844988|dbj|BAF53987.1| hypothetical protein [Corynebacterium glutamicum R] Length = 293 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 18/285 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNF+ D N +++I ++ V+E+G G G+LT L+ Sbjct: 14 EIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVES 73 Query: 69 GARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A V +E D + L + ++L I+ DALKV P ++AN Sbjct: 74 AA-SVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDM--EVQPTALVAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EV +R+ A S YG SV + Sbjct: 131 LPYNVSVPVLLHMLEE---FPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPV 187 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSL 241 T I +VF+P+PK+ S ++ + E+ KK+ AF +RRKTLR +L Sbjct: 188 TRAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRAAL 247 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 G E L A I+ LR E L + D+ R+ +L + Sbjct: 248 SGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVLQQKDE 292 >gi|189500122|ref|YP_001959592.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1] gi|226729769|sp|B3EQT0|RSMA_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189495563|gb|ACE04111.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1] Length = 262 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 89/263 (33%), Positives = 133/263 (50%), Gaps = 11/263 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +I KK +GQNFL D NI +KI ES+ + V+EIG G G LT +L + R Sbjct: 7 KHTEIAVKKKLGQNFLTDQNICRKIVESAQLQENDHVLEIGPGFGALTTAILEVVPR-FT 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +EKD+ IL + + +I+ D LK+D E+ + +RI+ N+PY+I T +L Sbjct: 66 AVEKDR----ILAEFIRNEYPSVRVIEMDFLKIDLEELASEGR-LRIMGNIPYSITTPIL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + S TL+ Q EV R+ A S YG L+V T +F ++ V Sbjct: 121 FKLLDNRRN---IFSETLMMQHEVARRLVASPGSKEYGILAVQLQTFCDVTYLFKVNRTV 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S V+ IP + + +FG+RRKTL +LK+ +++ Sbjct: 178 FKPRPEVDSAVVSIIPKTAIFDADETGFRNFVRTSFGQRRKTLHNNLKKYYDLSMVTS-- 235 Query: 255 IETNLRAENLSIEDFCRITNILT 277 I+ LRAE+LS+E F + L Sbjct: 236 IDLKLRAESLSVEQFLTLFKELR 258 >gi|329894607|ref|ZP_08270413.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088] gi|328922961|gb|EGG30289.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088] Length = 266 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 YK +K GQNFL D +++ I + ++EIG G G LT L+ R + I Sbjct: 8 YKHKARKRFGQNFLHDTHVITSIVSAIAPAQDDHIVEIGPGQGALTAELVPYCQR-LDAI 66 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ +L S H + DALK D+ + + P+R++ NLPYNI T L+ Sbjct: 67 ELDRDLLTLLLASFSIHKG-FHLHNQDALKTDYREL-HQGRPLRVVGNLPYNISTPLILK 124 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + Q EV +R+TAQ +S +GRL + + + + D+ P F Sbjct: 125 LFE---YTDIIADMHFMLQSEVVDRLTAQPHSKAWGRLGIAAQYLCRVERIIDVPPEAFD 181 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P+PKV S V+ P + LE L + + ++AF +RRKTLR +LK + + L Sbjct: 182 PAPKVQSAVVKLTPK-DSSKIDLEQLGRLQALVKQAFAQRRKTLRNNLKGVVSDAQLEHF 240 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI+ RAE +S+E + +++ + Sbjct: 241 GIDPAARAETISLEQWVALSDGIE 264 >gi|254294291|ref|YP_003060314.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814] gi|254042822|gb|ACT59617.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814] Length = 274 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 104/266 (39%), Positives = 143/266 (53%), Gaps = 11/266 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K +GQ+FL D +IL + A S+G ++G TVIE+G GPG LT LL GA+KVI +E D Sbjct: 10 RANKSLGQHFLFDPDILNRTALSAGPVEGRTVIEVGPGPGGLTAALLRNGAKKVIAVEMD 69 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWI 138 +F L+ RL +I+ D L +D+ K P++IIANLPYN+GT +L NWI Sbjct: 70 ARFAENLRSWKEYKEGRLSVIEGDGLSLDYPKLVEGEDKPVKIIANLPYNVGTPMLINWI 129 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +W + L+FQ EV R+ AQ HYGRL+VL+ + F + P F P Sbjct: 130 KSGSWRG---EMGLMFQHEVAARVCAQPGEKHYGRLAVLSQAVANTHIAFTLPPGAFKPP 186 Query: 199 PKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLH 251 PKV S+V +P L +L+++T AFG+RRK LR SLK L L Sbjct: 187 PKVDSSVAVLMPLPEDKKYTHLSTLEQVTGAAFGQRRKMLRASLKSLAKTKNMDASEWLE 246 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 I+ RAE L +F +T Sbjct: 247 SCDIDPTRRAETLEQFEFRALTEAFR 272 >gi|325298753|ref|YP_004258670.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides salanitronis DSM 18170] gi|324318306|gb|ADY36197.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides salanitronis DSM 18170] Length = 263 Score = 257 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ G R++ V+E Sbjct: 4 VKPKKFLGQHFLKDLQVAQDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RQLKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ +Q + II+ D LK+D F P + N PYNI +++ F + Sbjct: 63 DFESVAYLRENFAQLGDN--IIEKDFLKMDLSGLFG-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LS+L K +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAAPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K+I + F +RRKTLR S+ + ++ A Sbjct: 177 PKVKSAVIRMTRNDTTDLGCNEKLFKQIVKTTFNQRRKTLRNSISTILDKSHPLSADALF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 + R E LS++DF +TN + + Sbjct: 237 DKRPEQLSVQDFISLTNRVEE 257 >gi|330818270|ref|YP_004361975.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3] gi|327370663|gb|AEA62019.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3] Length = 275 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 124/276 (44%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+DL ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDLGVIDSIVNAIRPERGERMVEIGPGLGALTGPVIERLATPEL 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ LK + RLE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLKQRFGE---RLELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + + + Q EV ER+ A+ S + RLSV+ +R + D Sbjct: 123 SSPLLFHLM---DFAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ + L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELAAVDVAVLGEVVTAAFSQRRKMLRNTLGAYRDA 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++ ++++ + ++ + Sbjct: 240 IDFDALGFDLARRAEDVGVDEYVGLAQAVSAARPAG 275 >gi|110598757|ref|ZP_01387018.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031] gi|110339621|gb|EAT58135.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031] Length = 261 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 136/268 (50%), Gaps = 11/268 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K H +I KK +GQNFL D NI +KI SSG+ ++EIG G G LT+ ++ + Sbjct: 2 IKVEYKHTEIAAKKKLGQNFLTDRNITRKIVASSGATADDNILEIGPGFGALTREIIAIC 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 V+EKD + ++ S++P L++++ D L D E P+R++ N+PY+I Sbjct: 62 P-TFTVVEKDPKLAAFIR---SEYPG-LKVLEADFLDTDLE-LLAGEKPLRVLGNIPYSI 115 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +LF + + S TL+ Q EV RI A+ ++ YG L+V + +F Sbjct: 116 TSPILFKLLEHRR---SFISATLMMQHEVAMRIVARPSTKDYGILAVQMQAFCDVSYLFK 172 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + VF P P V S VI P E ++ + AF +RRKTL +LK + Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKQESPVEESEGFRRFVRTAFHQRRKTLLNNLKESYNLDA 232 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 + + + LRAE L+IE+F + L Sbjct: 233 VESSTL--KLRAEALTIEEFFTLFGQLK 258 >gi|309787289|ref|ZP_07681901.1| dimethyladenosine transferase [Shigella dysenteriae 1617] gi|308924867|gb|EFP70362.1| dimethyladenosine transferase [Shigella dysenteriae 1617] Length = 249 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 8/250 (3%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + I + G ++EIG G LT+ + ++ VIE D+ L+ Sbjct: 2 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQ-THPFLGP 59 Query: 96 RLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 +L I Q DA+ +F + + P+ + NLPYNI T L+F+ S + + + Sbjct: 60 KLTIYQQDAMTFNFGELAEKMGQPLHVFGNLPYNISTPLMFHLFS---YTDAIADMHFML 116 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN- 213 QKEV R+ A NS YGRLSV+ + + ++ P F P PKV S V+ +PH Sbjct: 117 QKEVVNRLVAGPNSKVYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATM 176 Query: 214 PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 P P + L +IT EAF +RRKT+R SL L +L GI+ +RAEN+S+ +C++ Sbjct: 177 PHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQM 236 Query: 273 TNILTDNQDI 282 N L +N + Sbjct: 237 ANYLAENAPL 246 >gi|325478267|gb|EGC81386.1| dimethyladenosine transferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 280 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +K I Y K +GQNFL+D N + KI +++ G VIEIG G G Sbjct: 1 MKKLYSPKIVKEITDLYSFRFSKSLGQNFLVDKNFVDKIVDAADVS-GENVIEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 +T + + A+KV+ IE D PI+++ + N ++I +D LK D EK Sbjct: 60 ITYEMAKV-AKKVVAIEIDDSLIPIIEENMVEFDN-FDLIHEDILKADLEKIVAEEFAGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPY I T ++ ++++ + +T++ QKEV +R+ A + Y LSV Sbjct: 118 SFKVVSNLPYYITTPIIEKLVTSNLP---CKDMTIMVQKEVADRMLATEKDKEYSSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + A + ++ VF P PK+ STV+ L + F KRRKT+ Sbjct: 175 VKYYSDAKKVTNVPKSVFMPQPKIDSTVLKLELRKYTDDVDEAKLFSLIHAGFNKRRKTI 234 Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277 SL + ++ + GI+ NLRAENLS++DF + I+ Sbjct: 235 LNSLSDVVEKDKLRLAFEKLGIKNNLRAENLSLDDFINLAKIIE 278 >gi|268318145|ref|YP_003291864.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252] gi|262335679|gb|ACY49476.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252] Length = 266 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 128/261 (49%), Gaps = 14/261 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K +GQ+FL+D NI +KI + + V+EIG G G LT +LL + IE Sbjct: 5 FRPRKRLGQHFLVDPNIARKIVAALQAAPEDPVVEIGPGTGALTGLLLERYPH-LTAIEI 63 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137 D + LK + L++ Q+D LKV++ + + ++ NLPY I + +LF Sbjct: 64 DPRAVAELKARWPE----LDVRQEDVLKVNWAELAEEKGGRLHVVGNLPYYITSPILFAL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + A L+ Q+EV ER+ A S YG LSV ++F +S HVF P Sbjct: 120 LDAREA---LAEAVLMMQREVAERLVAPPGSKTYGILSVAAQLWATPALLFPVSRHVFRP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 P+V S V+ E L+++ + AF +RRKTLR SL+RL + Sbjct: 177 KPRVESAVVRLTFERPLPDVDPELLRQVIRTAFNQRRKTLRNSLRRLLPSGTPLP---DP 233 Query: 258 --NLRAENLSIEDFCRITNIL 276 RAE+LS +D+ +T L Sbjct: 234 WAQARAEDLSPDDYVALTRWL 254 >gi|332884271|gb|EGK04539.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas mossii DSM 22836] Length = 265 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 9/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL+I ++IA++ + VIE+G G G LTQ L+ + + V+E Sbjct: 4 VKPKKFLGQHFLKDLDIARRIADTLDDFTDVPVIEVGPGMGVLTQFLIE-KEKGLTVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P L D R I++ D L +D + S +I N PYNI +++ F + Sbjct: 63 DRDSVPYLNDHYPALHGR--IVEGDFLTLDLSAIY--SDKFCVIGNYPYNISSQIFFKVL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ERI A+ YG LSVL +F +S VF P Sbjct: 119 EYKNK---VLCCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPP 175 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + + C + K + + F +RRKTLR S+K L G++ A Sbjct: 176 PKVKSAVVKLVRNKRGHLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCEAYADPIF 235 Query: 258 NLRAENLSIEDFCRITNILT 277 + R E LS+ DF ++TNI++ Sbjct: 236 DERPERLSVADFEKLTNIVS 255 >gi|302865247|ref|YP_003833884.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC 27029] gi|302568106|gb|ADL44308.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC 27029] Length = 289 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 15/279 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+ Sbjct: 1 MTGLLGPAEIRELAARLGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS 116 LT LL + A V +E D L + +++ RL + DAL+V + Sbjct: 61 LTLALLPVAAH-VHAVELDPALAAALPETAARFAGTAAERLTVHPADALRVTADDLAG-P 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +P ++ANLPYN+ ++ + ++ P ++ QKEV +R+ A S YG SV Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSKVYGIPSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRK 235 W ++ + P+VF+P P V S ++ F P P +++ + AF +RRK Sbjct: 176 KLAWYARSRAAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRK 235 Query: 236 TLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 TLR + L AG++ + R E+L++E F Sbjct: 236 TLRAALAGWAGGADRAAAALTAAGVDPSARGESLTVEQF 274 >gi|255007603|ref|ZP_05279729.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12] gi|313145296|ref|ZP_07807489.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12] gi|313134063|gb|EFR51423.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12] Length = 280 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 136/260 (52%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KERLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ ++ F P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFG-GHPFALTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL +F +S HVF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYHVEYLFTVSEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K++ + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNEVQDLGCDPKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFIELTNRVE 256 >gi|172061667|ref|YP_001809319.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6] gi|226729761|sp|B1YWD5|RSMA_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171994184|gb|ACB65103.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6] Length = 273 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + RAE++S+ ++ + L Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALA 269 >gi|300770912|ref|ZP_07080789.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762185|gb|EFK59004.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 10/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D N +KI ++ G V+E+G G G L+ LL + +I+ Sbjct: 4 VRAKKHLGQHFLNDKNAAQKIVDALDPKLGFSQVLEVGPGMGVLSDFLLQKPEYQTYLID 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L D + +RL I D L +DF K+F + +I N PYNI +++LF Sbjct: 64 VDDESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKI 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + +T +FQKEV ER TA+ S YG LSV +F + F P Sbjct: 120 LDERQ---RVVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTP 176 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + C + ++ + F +RRKTLR SL + ++ + + Sbjct: 177 PPKVLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPLY 236 Query: 257 TNLRAENLSIEDFCRITNILT 277 LRAE LS+EDF ++TN ++ Sbjct: 237 E-LRAERLSVEDFVQLTNEIS 256 >gi|323143362|ref|ZP_08078050.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066] gi|322416880|gb|EFY07526.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066] Length = 269 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + +K GQNFL+D I+ I ++ +G ++EIG G LT+ +L A+ + IE Sbjct: 8 LKARKRFGQNFLVDDFIIGAIVDAINPKEGDYLVEIGPGHAALTRPVLER-AKALTAIEL 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ IL+ S L +I+ DALKV+FE +R+ NLPYNI + ++F+ + Sbjct: 67 DRDLAAILR--SDPFLKGLTLIEADALKVNFEALPGSGD-LRVFGNLPYNITSPIIFHLL 123 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + + + QKEV +R+ A + YGRL+V+ + + + D+ P F P Sbjct: 124 SQR----GIKDMHFMLQKEVVDRLCAGPHCRDYGRLTVMVQYHAEVIPVLDVPPEAFRPR 179 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P + L + AF RRKTLR SL L + I+ Sbjct: 180 PKVNSAVVRLKPKNLTDDERALAPFLNTVALNAFNTRRKTLRNSLSTLFCTEEMQDLNID 239 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 T LRAE+L++ F + L D + Sbjct: 240 TTLRAEDLNLASFVVLAKALRDKK 263 >gi|240169906|ref|ZP_04748565.1| dimethyladenosine transferase [Mycobacterium kansasii ATCC 12478] Length = 317 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 132/279 (47%), Gaps = 19/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 19 RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVAASGITRADQVLEVGPGLGSLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L ++H + RL ++ D L + + + P ++ Sbjct: 79 DRGA-TVTAVEIDPVLAARLPQTVAEHSHSEIQRLTVLNRDILSLRPQDLAD--EPTAVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + ++ P +T++ Q EV ER+ A+ YG SV + Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFHG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + P P + + ++ AF +RRKT R Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDGAFRQQVFELVDIAFAQRRKTSR 252 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + + G N L A I+ R E LSI DF R+ Sbjct: 253 NAFAQWAGSGNESANRLLAASIDPARRGETLSIADFVRL 291 >gi|194227549|ref|XP_001493452.2| PREDICTED: similar to transcription factor B1, mitochondrial [Equus caballus] Length = 348 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 140/299 (46%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLHAVKQLSQNFLLDLRLTDKIVRKAGTLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++V+EKD +F P L+ +S P +L I+ D L E+ F + Sbjct: 74 LNAGVAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRHWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+TA S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSRRDGPFAYGRTQMTLTFQKEVAERLTATTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + + I F P P+V V+ F P P I + ++K+ Q F Sbjct: 194 SRLSIMAQYLCSVQHVLTIPGRAFVPKPEVDVGVVRFTPLTQPRIEQPFQLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A ++ LR LS+ F + ++ D Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGKLLQLADVDPTLRPSQLSVSHFKSLCDVYRKMCD 312 >gi|295099321|emb|CBK88410.1| dimethyladenosine transferase [Eubacterium cylindroides T2-87] Length = 289 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 149/289 (51%), Gaps = 18/289 (6%) Query: 3 MNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M+ ++K I Y + KK GQNF+++ +++KIA+++ V EIG G G Sbjct: 1 MDRPIATIKRTKEIQEKYNVFTKKSYGQNFIIEPRVVEKIADAAIKSKDELVFEIGPGIG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNI 115 LTQ L T+ + +VI E D + +L++ + L+I+ D LKVD K+ Sbjct: 61 ALTQYL-TMKSNQVIAFEIDDRLPEVLENEIG--YDHLKIVLKDILKVDINEEIKKYRKP 117 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 I +NLPY I T +LF A E +T++ QKEV +R A +N Y LS Sbjct: 118 DQKIVFASNLPYYITTPILFKLFEATEP---IERITVMMQKEVADRFLASQNDKEYNALS 174 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235 V+T +R + D+S HVF+PSP V S V+ F H E K+ + F +RRK Sbjct: 175 VITQYRCDIKKVMDVSRHVFWPSPNVDSAVLQFTFHHKYNLKDEELFFKMVKACFVQRRK 234 Query: 236 TLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 T+ + + L + LL +A +++++RA+ ++EDF R+ + ++ Sbjct: 235 TIYNNFQTLFKDKEEALQLLEKAQLKSSIRAQQCTLEDFIRLYEVSYES 283 >gi|88801801|ref|ZP_01117329.1| dimethyladenosine transferase [Polaribacter irgensii 23-P] gi|88782459|gb|EAR13636.1| dimethyladenosine transferase [Polaribacter irgensii 23-P] Length = 267 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 14/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D +I K IA++ V+EIG G G LT+ LL A K+ V+E Sbjct: 3 VKAKKHLGQHFLTDESIAKNIADALSGNGYDDVLEIGPGMGILTKYLLPQKA-KITVMEL 61 Query: 79 DQQFFPILKDISS-------QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D++ L D +++ D LK + + F+ + II N PYNI T Sbjct: 62 DRESVAYLHDTFPLEHLTLDTSAAHFSVLEGDFLKKNIQDIFH-KKQVAIIGNFPYNIST 120 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F I + P + + FQKEV +RI ++ S YG +SVLT +F + Sbjct: 121 QIVFKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGIMSVLTQAFFDVEYLFTVP 177 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P VF P PKV S VI + + +P + ++ + AF +RRK LR SLK L + L Sbjct: 178 PDVFNPPPKVDSGVIRLVRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSLNLSDSL 237 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + I R E LS+ F +T + + Sbjct: 238 KEDPI-FTKRPEQLSVAAFIALTQKIAKD 265 >gi|62258206|gb|AAX77774.1| unknown protein [synthetic construct] Length = 297 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 95/266 (35%), Positives = 134/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 28 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 86 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 87 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 145 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS GRLSV+ + +M+ I P V Sbjct: 146 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 202 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 203 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 262 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 263 TLPVDTNLRAENLSVGDFVSLANFLS 288 >gi|73946166|ref|XP_533459.2| PREDICTED: similar to transcription factor B1, mitochondrial [Canis familiaris] Length = 345 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLHAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L E+ F + Sbjct: 74 LNANVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPEILKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+TA S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + + I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSIMAQYLCNVQHILTIPGQAFVPKPEVDVGVVHFTPLVRPRIEQPFKLVEKVVQNTF 253 Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L + LL A ++ LR LS+ F + ++ D Sbjct: 254 QFRRKYCYRGLGMLFPQIHRVESTGKLLELADVDPTLRPSQLSVSHFKSLCDVYRKMCD 312 >gi|4929619|gb|AAD34070.1|AF151833_1 CGI-75 protein [Homo sapiens] Length = 346 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ ++ + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLLRLQAANELSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L+ L E LL A I+ LR LSI F + ++ D Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312 >gi|311740851|ref|ZP_07714678.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304371|gb|EFQ80447.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 300 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 135/278 (48%), Gaps = 20/278 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + I+P K +GQNFL D N +++I ++ V+E+G G G+LT L+ Sbjct: 28 EIRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELEPTDRVLEVGPGMGSLTLGLVE- 86 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 V +E D + L + + ++ RL +++ DAL+V +++ P ++AN Sbjct: 87 AVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVAN 143 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EV +R+ AQ S YG SV G+ K Sbjct: 144 LPYNVAVPVLLHLLET---FPSIRRVLVMVQLEVADRLAAQPGSKVYGVPSVKAGFYGKV 200 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P + S ++ + P P E + + AF +RRKTLR + Sbjct: 201 SKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRAKVWPVIDAAFAQRRKTLRAA 260 Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 L G L A I+ R E L++EDF R+ Sbjct: 261 LSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLA 298 >gi|298505979|gb|ADI84702.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase [Geobacter sulfurreducens KN400] Length = 276 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 92/270 (34%), Positives = 137/270 (50%), Gaps = 16/270 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I +K +GQNFL D ++L +IA + G ++EIG G G LT L L A +++ +E Sbjct: 5 GIRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEL-AGQLVAVE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D + P+L+ S +P+ + II+ D L +D + + P ++ ANLPYNI T +LF Sbjct: 64 LDNRLVPLLRGSFSGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLF 122 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + A + L L+ QKEVG R+ A S YG LSVL T + P F Sbjct: 123 RLLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSF 179 Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLK-------RLGG 246 P PKV S V+ F+P P + +++ + +F RRKTL LK G Sbjct: 180 HPVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLKGGALGVPTDGI 239 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 ++L + GI+ R E LS+ +F +T L Sbjct: 240 RDVLARCGIDEGRRGETLSLHEFASLTKEL 269 >gi|297243121|ref|ZP_06927059.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD] gi|296889332|gb|EFH28066.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD] Length = 298 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 12/282 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI ++G G V+E+G G G+LT +L Sbjct: 20 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAGVKSGDIVMEVGPGLGSLTLAIL 79 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNI--SSPIR 120 GA ++ +E D L + + +I DAL V+ + I + Sbjct: 80 QTGA-QLTAVEIDPPLARRLPHTVEEFMPKAMQKFNVILKDALTVNADDVPQIAQAKKFT 138 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ + + + + QKEV +R+ AQ + YG SV W Sbjct: 139 LVANLPYNVATPIILTLLEKFSNLQNFLVMV---QKEVADRLCAQPGNKVYGTPSVKLAW 195 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238 KA I +VF+P+P V S ++ F E + AF +RRKTL Sbjct: 196 YGKAQRAGLIGRNVFWPAPNVDSALVSFTRDCTSKGDNNEREGVFAFIDAAFQQRRKTLH 255 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK E +GI+ R E L+ ++F + D Q Sbjct: 256 AALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCQ 297 >gi|260577799|ref|ZP_05845733.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734] gi|258604026|gb|EEW17269.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734] Length = 311 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 33/296 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K +GQNF+ D N ++KI +++ V+EIG G G+LT LL Sbjct: 12 PNEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPI--RI 121 GA V +E D + L + +I DA+ V + F + P+ + Sbjct: 72 ETGA-SVTAVEIDPRLAEKLPATLEEQGAGEADAAVILKDAMAVTAQDFADAGRPLPTAL 130 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + + P + + ++ Q EV +R+ A S YG SV G+ Sbjct: 131 VANLPYNVSVPVLLHMLEE---FPSIDRVLVMVQLEVADRLAAGPGSKIYGVPSVKAGFY 187 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-------------------PIPCCLESL 222 T I +VF+P+PK+ S ++ + + + Sbjct: 188 GSVTRAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQLGADLGTEQLDVEQLRREV 247 Query: 223 KKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 + AF +RRKTLR +L G E L +AGI+ LR E LS E F ++ Sbjct: 248 FALADAAFLQRRKTLRAALSGHFGGGQAAEEALRRAGIDPTLRGEKLSTEQFVQLA 303 >gi|301783565|ref|XP_002927199.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like [Ailuropoda melanoleuca] Length = 351 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L+I+ D L E+ F + Sbjct: 74 LNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+N+ T L+ W+ + +TL FQKEV ER+TA S Sbjct: 134 PNVHIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + + I F P P+V V+ F P + P I + ++K+ + AF Sbjct: 194 SRLSVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAF 253 Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A ++ L+ LS+ F + ++ D Sbjct: 254 QFRRKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCD 312 >gi|262047261|ref|ZP_06020219.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US] gi|260572506|gb|EEX29068.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US] Length = 294 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 146/295 (49%), Gaps = 23/295 (7%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT N + I++ Y + KK +GQNFL+D + I E++G VIEIG G Sbjct: 1 MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDAL----KV 107 G+LT+ LL GA KV E D IL++ +R ++I D L KV Sbjct: 61 IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDLLKADFKV 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D FF+ + PI+++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ Sbjct: 120 DISDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226 S YG L++ + +S + F P PKV S+V+ P P + + Sbjct: 177 SKEYGPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + F +RRKTL +LK L + L + G+ +R E L+I+ F +I + + Sbjct: 237 KMCFSQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291 >gi|224025715|ref|ZP_03644081.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM 18228] gi|224018951|gb|EEF76949.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM 18228] Length = 265 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA + + + ++E+G G G LTQ L+T R + V+E Sbjct: 4 VKPKKFLGQHFLKDLQVAQDIANTVDACPELPILEVGPGMGVLTQFLMT-KERPLKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ N II+ D LK+D + F P + N PYNI +++ F + Sbjct: 63 DFESVAYLRENFPALGNN--IIEQDFLKMDLAQLFE-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ER+ A S YG LSVL + +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERMAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K+I + F +RRKTLR S+ + + A Sbjct: 177 PKVKSAVIRMTRNETQELGCNEKLFKQIVKTTFNQRRKTLRNSISPILDKTNPLMADPIF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFIDLTNRVE 256 >gi|300172804|ref|YP_003771969.1| dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811] gi|299887182|emb|CBL91150.1| Dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811] Length = 295 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 79/292 (27%), Positives = 151/292 (51%), Gaps = 20/292 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + N + + + IL+ Y + KK GQNFL DL++L I +++ + VIEIG G G+LT Sbjct: 7 IANPTRT-QAILNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLT 65 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118 + + A+KV+ E D Q +L + + N +++I D L+++ + F ++ Sbjct: 66 EQIA-RAAKKVLAFEIDTQMVKVLGETLKDYDN-VKVISGDILEMNLPQIITEEFGETAH 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++++ANLPY I T +L + + W+++ ++ Q+EV +R+ A+ + YG L++ Sbjct: 124 VKVVANLPYYITTPILMQLLRTNI---TWDNIVVMMQREVADRLNAEVGTKAYGVLTLTV 180 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237 + A + ++ F P+PKV S V+ P + + E L + + +F RRK+L Sbjct: 181 QYFANAQLAIEVPATAFNPAPKVESAVVKLTPLVPQVIVDQPERLFGVIKGSFSHRRKSL 240 Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 ++ + G++ L QA I+ ++RAE L + + L + + Sbjct: 241 WNNMLQTYGKDTYIKEKITAALKQATIDPSIRAERLDLTQLTTLYLALREQE 292 >gi|304315637|ref|YP_003850782.1| dimethyladenosine transferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777139|gb|ADL67698.1| dimethyladenosine transferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 272 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 142/273 (52%), Gaps = 16/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK +GQNF+ D IL KIA+ + VIEIGAG G LT+ ++ A+ V+ E Sbjct: 5 GFNTKKKLGQNFIFDEGILSKIADLADITKDDNVIEIGAGLGTLTREIVER-AKNVVAYE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134 D + IL+D ++ N L I+ DD +K D + + +++ANLPY I + ++ Sbjct: 64 IDDEAVGILRDKLREYKN-LIILNDDIMKADLKGVVDKYFDGDKCKVVANLPYYITSPII 122 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + + + +T+L QKEV ERI A+ S YG L+V + +K M+ ++ P V Sbjct: 123 MKLLESH----LMKDITILIQKEVAERICAEPGSKEYGVLTVAVNYYSKPEMLLELPPEV 178 Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247 F P PKV+ST+I P + K+ + +FG+RRK + SLK L + Sbjct: 179 FSPKPKVSSTLIKLHVLDEPPVFVKNEKLFFKVVKASFGQRRKVITNSLKSLNIDQSLIL 238 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 N L + GI+ R E LSIE F + N + D + Sbjct: 239 NALLKCGIDLKQRGETLSIEKFAELANAIDDMK 271 >gi|15618967|ref|NP_225253.1| dimethyladenosine transferase [Chlamydophila pneumoniae CWL029] gi|15836590|ref|NP_301114.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138] gi|16753057|ref|NP_445330.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39] gi|27151618|sp|Q9Z6K0|RSMA_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|4377394|gb|AAD19196.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029] gi|7189706|gb|AAF38590.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39] gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138] Length = 277 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 143/279 (51%), Gaps = 14/279 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + L LS + PKK + QNFL+D NI+KKI +S + V+EIG G G Sbjct: 1 MTRSSPA-QLSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L+ GA +VI IEKD F P L+++ P RLEII +D + + R Sbjct: 60 LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T LL P FW+++T++ Q EV RI AQ YG L++ + Sbjct: 115 VVANLPYHITTPLLTKLFLEA--PDFWKTVTVMVQDEVARRIVAQPGGRDYGSLTIFLQF 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238 F +S F+P P+V S VIH E +T+ AF +RRK L Sbjct: 173 FADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPLSDEEIPVFFTLTRTAFQQRRKVLA 232 Query: 239 QSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +LK L E L + G+ N+R E LS+ D+ + Sbjct: 233 NTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLALF 271 >gi|325954121|ref|YP_004237781.1| ribosomal RNA small subunit methyltransferase A [Weeksella virosa DSM 16922] gi|323436739|gb|ADX67203.1| Ribosomal RNA small subunit methyltransferase A [Weeksella virosa DSM 16922] Length = 254 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 93/261 (35%), Positives = 143/261 (54%), Gaps = 9/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK++GQ+FL D + +KIAE + V+EIG G G LT+ +L +K+ V+E Sbjct: 2 KVRAKKHLGQHFLNDEQVAQKIAEGLTWDNYQQVLEIGPGMGVLTKYILQAN-KKISVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L++ L I ++D LK+DF +F + + ++ N PYNI ++++F Sbjct: 61 IDTESVAYLEENYVPFYPDLIIYEEDFLKMDFSRFTDD---LAVLGNFPYNISSQIIFKI 117 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + +FQKEV ERI A K S YG LSVL + +F +S +VF P Sbjct: 118 LEEKNKVP---EVVGMFQKEVAERIAAPKGSRVYGILSVLAQAFYQVDYLFTVSENVFTP 174 Query: 198 SPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + +P + + + AF +RRKTLR +LK LG + + + + Sbjct: 175 PPKVKSGVIRMKRYRSTLPEVDEKLFFTVVKTAFNQRRKTLRNALKSLGIPDTMKENEL- 233 Query: 257 TNLRAENLSIEDFCRITNILT 277 NLRAE LS+EDF +T + Sbjct: 234 LNLRAEQLSVEDFLELTKRMK 254 >gi|256545786|ref|ZP_05473142.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170] gi|256398482|gb|EEU12103.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170] Length = 282 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++KTI Y K +GQNFL+D N + KI + S G ++EIG G G Sbjct: 1 MKKLYSPKTIKTIQDLYGFKFSKSLGQNFLVDKNFVDKIIDLSEV-KGENILEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 ++Q + +K++VIE D+ PIL D + N +EII D LK D +K Sbjct: 60 ISQEMAKTC-KKLVVIEIDKTLIPILNDNLGEFSN-VEIINADILKTDLKKIAKEKFDGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPY I T ++ D + +T++ QKEV +R+ A + S Y LSV Sbjct: 118 DFKVVSNLPYYITTPIIEKLFEEDL---SCKDMTIMVQKEVADRMKADEKSKDYSSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + F + VF P PK+ S V+ L +L + + F KRRKT+ Sbjct: 175 IKYYAEIIGQFKVPKSVFMPQPKIDSQVLKLNLRLYDENVNTNTLFNVVRAGFNKRRKTI 234 Query: 238 RQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL + + +L ++ NLRAENLS++DF +I N Sbjct: 235 LNSLSSVIEKENLKEILENLSLKENLRAENLSLDDFIKIANEFE 278 >gi|110638030|ref|YP_678238.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406] gi|118600861|sp|Q11UL8|RSMA_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110280711|gb|ABG58897.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406] Length = 258 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 130/262 (49%), Gaps = 10/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVI 76 K+ KK++GQ+FL D I + I + V+EIG G G LTQ LL + V+ Sbjct: 3 KVKAKKHLGQHFLNDQQIAQDIVDGLTLHGSYKEVLEIGPGMGVLTQYLLKNNSYHTKVV 62 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + D + LK + Q + ++I D LK D ++ II N PYNI T +LF Sbjct: 63 DIDGESIEYLKKVFPQLKD--DVIHGDFLKADLADWY--PDKFAIIGNFPYNISTEILFK 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + +FQKEV ER A+ + YG SVL +F + HVF Sbjct: 119 VLDYREQIP---EVVGMFQKEVAERFAAKNGNKTYGITSVLLQAFYDIEYLFTVPEHVFT 175 Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + +PC + K+ + F RRKTLR +LK + +N+ I Sbjct: 176 PPPKVKSGVIRLKRNNRTHLPCDEKEFFKVVKAGFNMRRKTLRNALKSINVQNISMDLPI 235 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + RAE LS+++F +TN+L+ Sbjct: 236 -FDKRAEQLSVQEFFDLTNMLS 256 >gi|270284640|ref|ZP_05966446.2| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093] gi|270276584|gb|EFA22438.1| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093] Length = 319 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 125/278 (44%), Gaps = 19/278 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I P K GQNF++D +++I +G G V+E+G G G+LT LL A V +E Sbjct: 46 GISPTKKFGQNFVIDPGTVRRIVREAGVGAGDRVLEVGPGLGSLTLALLETRAH-VTAVE 104 Query: 78 KDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGT 131 D L + +R +I +DALKV + F P ++ANLPYN+ T Sbjct: 105 IDPPVAERLPRTIGEFMPDALDRFRVINEDALKVSAAQLPEFADGEPFTLVANLPYNVAT 164 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + P ++ QKEV +R+ A S YG SV W A + Sbjct: 165 PIVLTLLER---FPNLTKFLVMVQKEVADRLCADPGSKIYGTPSVKLAWYGTAERAGLVG 221 Query: 192 PHVFFPSPKVTSTVIHFIPHL---------NPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 +VF+P+P V S ++ F + ++ AFG+RRKTL +LK Sbjct: 222 RNVFWPAPNVDSALVLFERAEGGDVTANGAYGTDVDRAFVFELIDAAFGQRRKTLHAALK 281 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +A I+ R E L+I +F R+ + D Q Sbjct: 282 KQVPAAAFERAQIDATRRGETLTIGEFIRLAQAVRDVQ 319 >gi|293381472|ref|ZP_06627467.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1] gi|290921942|gb|EFD98949.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1] Length = 294 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 145/295 (49%), Gaps = 23/295 (7%) Query: 1 MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT N + I++ Y + KK +GQNFL+D + I E++ VIEIG G Sbjct: 1 MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAARIKKDDQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDAL----KV 107 G+LT+ LL GA KV E D IL++ +R ++I D L KV Sbjct: 61 IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKV 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D FF+ + PI+++ANLPY I T ++F +D + SLTL+ QKEV ER+ AQ Sbjct: 120 DISDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226 S YG L++ + +S + F P PKV S+V+ P P + + Sbjct: 177 SKEYGPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + F +RRKTL +LK L + L + G+ +R E L+I+ F +I + + Sbjct: 237 KMCFSQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291 >gi|118466314|ref|YP_880398.1| dimethyladenosine transferase [Mycobacterium avium 104] gi|166221679|sp|A0QBW0|RSMA_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118167601|gb|ABK68498.1| dimethyladenosine transferase [Mycobacterium avium 104] Length = 318 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 19/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 19 RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L ++H + RL ++ D L + ++ P ++ Sbjct: 79 DRGAH-VTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDELAE--PPTAVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + P + ++ AFG+RRKT R Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFQLVDIAFGQRRKTCR 252 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + G + L A I+ R E LSI+DF R+ D Sbjct: 253 NAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298 >gi|212278069|gb|ACJ23049.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K G NFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGPNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257 >gi|56707611|ref|YP_169507.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670082|ref|YP_666639.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis FSC198] gi|224456681|ref|ZP_03665154.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370128|ref|ZP_04986134.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis FSC033] gi|254874431|ref|ZP_05247141.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis MA00-2987] gi|62900471|sp|Q5NHI5|RSMA_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118600868|sp|Q14IY7|RSMA_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56604103|emb|CAG45102.1| dimethyladenosine transferase , kasugamycin resistance [Francisella tularensis subsp. tularensis SCHU S4] gi|110320415|emb|CAL08485.1| dimethyladenosine transferase , kasugamycin resistance [Francisella tularensis subsp. tularensis FSC198] gi|151568372|gb|EDN34026.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis FSC033] gi|254840430|gb|EET18866.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158768|gb|ADA78159.1| dimethyladenosine transferase [Francisella tularensis subsp. tularensis NE061598] Length = 262 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 95/266 (35%), Positives = 134/266 (50%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 YK KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 2 QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS GRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L+ Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262 >gi|19552136|ref|NP_600138.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC 13032] gi|62389800|ref|YP_225202.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC 13032] gi|27151568|sp|Q8NRY1|RSMA_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21323676|dbj|BAB98303.1| Dimethyladenosine transferase (rRNA methylation) [Corynebacterium glutamicum ATCC 13032] gi|41325135|emb|CAF19616.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 293 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 18/285 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNF+ D N +++I ++ V+E+G G G+LT L+ Sbjct: 14 EIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVES 73 Query: 69 GARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A V +E D + L + ++L I+ DALKV P ++AN Sbjct: 74 AA-SVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDMAV--QPTALVAN 130 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EV +R+ A S YG SV + Sbjct: 131 LPYNVSVPVLLHMMEE---FPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPV 187 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSL 241 T I +VF+P+PK+ S ++ + E+ KK+ AF +RRKTLR +L Sbjct: 188 TRAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRAAL 247 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 G E L A I+ LR E L + D+ R+ +L + Sbjct: 248 SGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVLQQKDE 292 >gi|296111672|ref|YP_003622054.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154] gi|295833204|gb|ADG41085.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154] Length = 295 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 19/284 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL+ Y + KK GQNFL DL +L I + +G D VIEIG G G LT+ L Sbjct: 13 TQAILNTYGLHAKKKFGQNFLTDLTVLHGIVDIAGITDQDYVIEIGPGIGALTEQLA-RA 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANL 125 A+KV+ E D Q +L + + N +++I D L ++ + F + ++++ANL Sbjct: 72 AKKVVAFEIDTQMVDVLSETLQPYDN-VKVINGDILDINLPEVIRAEFGEEAHVKVVANL 130 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T +L + + W+++ ++ Q+EV ER+ A+ + YG L+++ + +A Sbjct: 131 PYYITTPILMQLLRTNIA---WDNIVVMMQREVAERLNAEVGTKAYGVLTLIIQYFAQAE 187 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRL 244 + ++S F P+P V S V+ P + E L + + +F RRK+L ++ + Sbjct: 188 LAIEVSAASFNPAPNVDSAVVKLTPLSPELVVAQPERLFGVIKGSFSHRRKSLWNNMLQT 247 Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G+ L QA I ++RAE L ++ + L Sbjct: 248 YGKEAVTKEKITKALDQANIAPSIRAERLDLKQLTALYLALKSQ 291 >gi|238028595|ref|YP_002912826.1| dimethyladenosine transferase [Burkholderia glumae BGR1] gi|237877789|gb|ACR30122.1| Dimethyladenosine transferase [Burkholderia glumae BGR1] Length = 276 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 79/276 (28%), Positives = 121/276 (43%), Gaps = 13/276 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDTGVIDSIVSTIRPERGQRMVEIGPGLGALTGPVIERLATPEA 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ LK LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLKQRFGSL---LELHAGDALGFDFGALALPGEQPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + + + Q EV ER+ A+ S + RLSV+ +R + D Sbjct: 123 SSPLLFHLM---RFAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH + L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELAEVDVGVLGEVVTAAFSQRRKMLRNTLGAYRDV 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G + RAE++ + ++ R+ + + A Sbjct: 240 VDFEALGFDLARRAEDVGVAEYVRLARTVAATRPAA 275 >gi|317132589|ref|YP_004091903.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3] gi|315470568|gb|ADU27172.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3] Length = 284 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 15/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT +K +L+ + K +GQNFL++ ++ ++A G+ + V+EIG G G Sbjct: 1 MTDLANPAQIKALLARHGFHFSKALGQNFLINPSVCPRMAALCGAEEAAGVLEIGPGIGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP 118 LT L A+KV+ +E D + P+L + Q N + ++Q DA++ D P Sbjct: 61 LTAELARR-AKKVVALELDTRLLPVLAETLDQFSN-VRVVQGDAMEADLAALIREEFGGP 118 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 + + ANLPY I + LL + + ++T++ QKE RI A S G +S+ Sbjct: 119 VAVCANLPYYITSPLLMRLLESHLP---VTAVTVMVQKEAAARICAAPGSRDTGAVSLAV 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236 + ++FD+S F P P+V S VI H P L ++ + AF +RRK Sbjct: 176 RYYASPRVLFDVSAGSFLPRPQVDSCVIRLDLHQEPPVAVRNEALLFRVVRAAFAQRRKM 235 Query: 237 LRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 LR + L R L +AG++ +LR E L++ DF R+ + L + Sbjct: 236 LRSALPAGLGLPRERVAAALRKAGVDESLRGERLTLADFARVADALAE 283 >gi|198276988|ref|ZP_03209519.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135] gi|198270513|gb|EDY94783.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135] Length = 267 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 8/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + V+E+G G G LTQ LL R + V+E Sbjct: 4 VKPKKFLGQHFLKDLQVAQDIADTVDACPALPVLEVGPGMGVLTQYLLK-KDRPLKVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ Q + II+ D LK+D + F+ P + N PYNI +++ F + Sbjct: 63 DFESVAYLRENFPQLGD--HIIEQDFLKMDLRQLFD-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A+ + YG LSVL +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAARPGNKTYGILSVLIQAWYSVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K+I + F +RRKTLR S+ + + A Sbjct: 177 PKVKSAVIRMTRNETKELGCNEQLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIF 236 Query: 258 NLRAENLSIEDFCRITNILTD 278 N R E LS++DF +TN + + Sbjct: 237 NKRPEQLSVQDFIDLTNRVEE 257 >gi|284033600|ref|YP_003383531.1| dimethyladenosine transferase [Kribbella flavida DSM 17836] gi|283812893|gb|ADB34732.1| dimethyladenosine transferase [Kribbella flavida DSM 17836] Length = 295 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 18/278 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQML 65 ++++ + + P K GQNF++D N +++I ++ G TV+EIG G G+LT L Sbjct: 17 PADVRSLAASLGLRPTKQRGQNFVIDPNTVRRIVRAAELDPAGETVLEIGPGLGSLTLAL 76 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRI 121 L G +V +E D L + + +R +++ DA+ V E +P Sbjct: 77 LAEG-HRVTAVEIDPLLAAALPATIASYAPAQADRFTVVEADAMAVQAEAI---GTPTAC 132 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ P ++ Q EV +R+ A S YG S W Sbjct: 133 VANLPYNVAVPVLLHLLAIA---PSLRHGLVMVQSEVADRLAAPPGSRTYGVPSAKAAWY 189 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P V S ++ F P + + + + AF +RRKT+R + Sbjct: 190 AEVRRAGPIGRNVFWPAPNVDSGLVAFARREPPATSASRQEVFAVIEAAFSQRRKTIRSA 249 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L R + +L AG++ LR E L I DF + Sbjct: 250 LARWVPDRPTLDAVLAAAGVDPGLRGEMLGIADFAALA 287 >gi|289577364|ref|YP_003475991.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9] gi|289527077|gb|ADD01429.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9] Length = 272 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 145/271 (53%), Gaps = 16/271 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK GQNF+ D NIL KI +SG + V+EIG G G LT+ L +KVI E Sbjct: 5 GVNVKKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAKR-VKKVISFE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134 D++ + + K+ + + N + II +D +K D K N P +++ANLPY I + ++ Sbjct: 64 IDRELYAVAKEKLNIYDN-VIIINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPII 122 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + F + +T+L QKEV ERI A + YG L+V ++ K M+F++ P V Sbjct: 123 MMLLDCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTV 178 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLH 251 F P PKV S+++ +P+ E + + AFG+RRK L +LK LG + ++ Sbjct: 179 FVPPPKVDSSLVKLEVLDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIID 238 Query: 252 QA----GIETNLRAENLSIEDFCRITNILTD 278 +A + R E LSIE+F + N++ D Sbjct: 239 KAFTLSNLSPQRRGETLSIEEFAVLANVIYD 269 >gi|159030325|emb|CAO91220.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 268 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 132/266 (49%), Gaps = 12/266 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI P+K GQ++L D +IL +I ++ V+EIG G G LT+ LL GA+ V+ +E Sbjct: 2 KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ + IL Q N +I D L + E+ ++ +++AN+PYNI +L Sbjct: 61 IDRDLWTILNKKFGQQDN-FHLIPGDFLTLKPEQLPPVN---KVVANIPYNITGPILEKL 116 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P P ++S+TLL QKEV ER+ A ++ Y LSV + + D+ F Sbjct: 117 LGSIAHPFTPPYQSITLLLQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPRRAF 176 Query: 196 FPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250 P P+V S VI +P + P L + F RRK LR +LK + +L Sbjct: 177 SPPPRVDSAVIQILPRVFPKNVGNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 Q I RAE+LS+ + + L Sbjct: 237 TQLEINPLARAEDLSLSQWIDLAEKL 262 >gi|281345012|gb|EFB20596.1| hypothetical protein PANDA_016957 [Ailuropoda melanoleuca] Length = 345 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L+I+ D L E+ F + Sbjct: 74 LNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+N+ T L+ W+ + +TL FQKEV ER+TA S Sbjct: 134 PNVHIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + + I F P P+V V+ F P + P I + ++K+ + AF Sbjct: 194 SRLSVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAF 253 Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L L E LL A ++ L+ LS+ F + ++ D Sbjct: 254 QFRRKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCD 312 >gi|224048037|ref|XP_002196390.1| PREDICTED: similar to Tfb1m protein [Taeniopygia guttata] Length = 351 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 145/299 (48%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ +++ K + QNFLLDL + KI + +G L V E+G GPG +T+ + Sbjct: 14 PLPTIGEIIKLFRLKALKQLSQNFLLDLRLTDKIVKQAGELKNAHVCEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L+ G ++++IEKD +F P L+ +S P ++ I+ D L EK F + Sbjct: 74 LSAGVEQLLLIEKDARFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPKHLKKSWDDEP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171 I II NLP+++ T L+ W+ + PF +TL FQKEVGER+TA S Sbjct: 134 PDIHIIGNLPFSVSTPLIIKWLENVSKRDGPFIYGRTQMTLTFQKEVGERLTANPGSSQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ F I F P P+V V+HF P + P I E ++K+ Q F Sbjct: 194 SRLSIMAQHLCTVENCFIIPGQAFVPKPEVDVAVVHFTPLVQPKIEQPFELVEKVVQSVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + ++ L EN L+ A ++ LR LS+ F + N D Sbjct: 254 QFRRKYCFRGIETLFPENGRLKRTEQLMMTANVDPTLRPFQLSMSQFRNLCNAYRKMCD 312 >gi|225011219|ref|ZP_03701678.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C] gi|225004633|gb|EEG42596.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C] Length = 286 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 94/267 (35%), Positives = 131/267 (49%), Gaps = 14/267 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D + +KIAE+ VIEIG G G LTQ LL ++ ++ Sbjct: 22 VRAKKHLGQHFLKDQVVARKIAETLLLNGYDNVIEIGPGTGVLTQYLLEQDIN-ILALDL 80 Query: 79 DQQFFPILKDISS-------QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D++ LK Q E+ D LK D FN +P I N PYNI T Sbjct: 81 DRESIEYLKTDFEINHLKLLQRKKSFEVRNADFLKEDLSTLFN-GAPFGITGNFPYNIST 139 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F + P + + FQKEV +RI ++ S YG LSVL +A +F + Sbjct: 140 QIVFKMLEYKDRVPEFTGM---FQKEVAQRICEKEGSKAYGILSVLVQAFYEAEYLFTVH 196 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P VF P PKV S V+ N I C LK + + AF +RRKTLR SLK L L Sbjct: 197 PEVFNPPPKVQSGVLRLTRKENQSIDCSETLLKTVVKAAFNQRRKTLRNSLKTLQLSENL 256 Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277 + I + R E +S+ DF +T + Sbjct: 257 TKDAI-FDKRPEQISVADFIALTKKIA 282 >gi|209519022|ref|ZP_03267830.1| dimethyladenosine transferase [Burkholderia sp. H160] gi|209500534|gb|EEA00582.1| dimethyladenosine transferase [Burkholderia sp. H160] Length = 280 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 122/272 (44%), Gaps = 13/272 (4%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + + H + +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ Sbjct: 2 STSRQHGRHQGHLARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIE 61 Query: 68 LGA---RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRII 122 A + +E D+ LK LE+ DAL+ DF +RI+ Sbjct: 62 RLATPEAPLHAVELDRDLIGRLKKKFGDL---LELHAGDALEFDFGSLAAPGEKASLRIV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI + LLF+ T+ + Q EV ER+ A+ + + RLSV+ +R Sbjct: 119 GNLPYNISSPLLFHL---ATFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRY 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240 D+ P F P PKV S ++ IP+ L ++ AF +RRK LR + Sbjct: 176 VIDKQLDVPPEAFQPPPKVDSAIVRMIPYELHELPVVDENVLGEVVTAAFSQRRKMLRNT 235 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 L L G + RAE++ + ++ + Sbjct: 236 LGALRDTVDFDALGFDLQRRAEDVPVAEYVSV 267 >gi|91216107|ref|ZP_01253075.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755] gi|91185624|gb|EAS71999.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755] Length = 288 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 143/271 (52%), Gaps = 15/271 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL+D +I K+IAE+ + +V+EIG G G LT+ LL + + + ++ Sbjct: 25 VKAKKHLGQHFLIDEDISKRIAETLQKDNYSSVLEIGPGMGVLTKYLLGKYS-QFVAMDL 83 Query: 79 DQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 D++ L + + L +I+ D LKVD +F + II N PYNI T+ Sbjct: 84 DRESIAFLNSSFKKEHHIEEDSKALTVIEADFLKVDLSDYFRDTQ-FAIIGNFPYNISTQ 142 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F + P + + FQKEV +RI A + S YG LSVL KA +F + P Sbjct: 143 IVFKTLEYKEQIPEFSGM---FQKEVAQRICASEGSKTYGILSVLVQAFYKAEYLFTVPP 199 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PK+ S V+ N +PC + L+ + + AF +RRKTLR SLK+ L Sbjct: 200 EAFDPPPKIHSGVLRLQRKENYELPCEEKKLRDVVKTAFQQRRKTLRNSLKKFNLSPELR 259 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + I R E LS+E F +T L +QD+ Sbjct: 260 EDPI-FTKRPEQLSVEQFIDLT--LKISQDV 287 >gi|157826080|ref|YP_001493800.1| dimethyladenosine transferase [Rickettsia akari str. Hartford] gi|166221695|sp|A8GPG7|RSMA_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157800038|gb|ABV75292.1| dimethyladenosine transferase [Rickettsia akari str. Hartford] Length = 273 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 107/276 (38%), Positives = 153/276 (55%), Gaps = 9/276 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ ++ ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHVASHQINPLKKHGQNFIFDSSLCDKIVRASHLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + VIE D++F P+L +I +PN L II+ DALK++ + II+NLPY Sbjct: 63 KNPESLTVIETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDL--DYDKVTIISNLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ W+ +TL+ QKEV ERI A ++ YGRLSV+ K Sbjct: 120 HIGTELVIRWLKEAR---LITDMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVEKC 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246 FD+SP F+P PKV S ++ IP NP L ++KIT AF RRK ++ SLK L Sbjct: 177 FDVSPTAFYPPPKVYSAIVKLIPLANPPSIALINRVEKITTFAFAGRRKMIKSSLKNLVP 236 Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L Q I N RAENL+ +D+ RI L+ N+ Sbjct: 237 NIHEVLTQLKINDNYRAENLAPQDYLRIAMSLSVNK 272 >gi|312878167|ref|ZP_07738097.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus 6A] gi|311795057|gb|EFR11456.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus 6A] Length = 282 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M L ++L Y + P K +GQNFL+D N+++KI S +G V+EIGAGPG Sbjct: 1 MNPAITKTELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQV-EGKEVVEIGAGPGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L A+KV +E D++ +LK++ N ++I+ D L+++ + N + + Sbjct: 60 LTVYLAKT-AQKVFAVEIDKKILNVLKEVCQVISN-VQIVNSDFLELNVKDLTN-GNKVY 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ NLPY + +++LF E T++ QKEV +R+ A+ + YG L+V + Sbjct: 117 IVGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + F +S +VF+P P+V S V+ + ++ KI F RRKT+ + Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNA 233 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + ++H AG++ NLRAE+LS++D+ R+ + Sbjct: 234 LSNQLDIAKEELKKIIHMAGLDENLRAEDLSLDDYIRLYQCFEE 277 >gi|226307847|ref|YP_002767807.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4] gi|229494958|ref|ZP_04388709.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121] gi|259494255|sp|C1A383|RSMA_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226186964|dbj|BAH35068.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4] gi|229318182|gb|EEN84052.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121] Length = 299 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 19/278 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + + P K +GQNF+ D N +++I ++G V+E+G G G+LT L+ + Sbjct: 25 EVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTTAGVTRDDVVLEVGPGLGSLTMALMDV 84 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 +VI +E D L + + + +RL +++ DA++V + P ++AN Sbjct: 85 -VDRVIAVEIDPNLAARLPKTVAERAPELADRLTVVEADAMRVLPSQI--PGEPTALVAN 141 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + ++ P + ++ Q EV +R+ A S YG SV + + Sbjct: 142 LPYNVAVPVLLHLFAS---LPSLRTALVMVQAEVADRLAADPGSKIYGVPSVKANFFGEV 198 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI---TQEAFGKRRKTLRQS 240 + +VF+P PKV S ++ + P P + K++ AF +RRKTLR + Sbjct: 199 RRAGAVGRNVFWPVPKVESGLVRIDRYAEPPWPMDEKHRKQVFAAIDAAFAQRRKTLRAA 258 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L G E L AGIE R E L F R+ Sbjct: 259 LSGWAGSPAEAERRLLAAGIEPQTRGEMLDAAAFVRLA 296 >gi|312792586|ref|YP_004025509.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179726|gb|ADQ39896.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 282 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M L ++L Y + P K +GQNFL+D N+++KI S +G V+EIGAGPG Sbjct: 1 MNPAITKTELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQV-EGKEVVEIGAGPGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L A+KV +E D++ +LK++ N ++I+ D L+++ + N + + Sbjct: 60 LTVYLAKT-AQKVFAVEIDKKILNVLKEVCQVISN-VQIVNSDFLELNVKDLTN-GNKVY 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ NLPY + +++LF E T++ QKEV +R+ A+ + YG L+V + Sbjct: 117 IVGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + F +S +VF+P P+V S V+ + ++ KI F RRKT+ + Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNA 233 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + ++H AG++ NLRAE+LS++D+ R+ + Sbjct: 234 LSNQLDIAKDELKKIIHMAGLDENLRAEDLSLDDYIRLYQCFEE 277 >gi|260060929|ref|YP_003194009.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501] gi|88785061|gb|EAR16230.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501] Length = 321 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 14/270 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D ++ +IA + ++EIG G G LT LL ++ +E Sbjct: 56 GVRAKKHLGQHFLTDASVAMRIAGTLSPDGPPRILEIGPGTGVLTAFLLRRPVD-LLAVE 114 Query: 78 KDQQFFPILKDIS-------SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D + L+++ + E++ D LK+D F P + N PYNI Sbjct: 115 LDGESVKYLREVFPLELASETTSYKSFEVLHGDFLKLDLPGLFG-GKPFAVTGNFPYNIS 173 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T+++F + P + + FQ+EV ERI A S YG LSVL A F + Sbjct: 174 TQIVFRVLENRERIPEFSGM---FQREVAERICAGPGSKTYGILSVLVQAYYLAEYRFTV 230 Query: 191 SPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P VF P PKV S V+H + + L ++ + AF +RRKTLR SLK L + Sbjct: 231 PPEVFDPPPKVESGVLHLRYRTDTRADWDYQHLTRLVKTAFNQRRKTLRNSLKSLPVPDY 290 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + I + R E L + +F ++ + D+ Sbjct: 291 LKEDAI-FDRRPEQLEVREFIALSKRIWDD 319 >gi|296169879|ref|ZP_06851491.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895435|gb|EFG75137.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 317 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 19/290 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + P+K +GQNF+ D N +++I ++G V+E+G G G+LT LL Sbjct: 19 RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRIVSTAGVGRSDHVLEVGPGLGSLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L ++H +RL ++ D L + ++ + P ++ Sbjct: 79 DRGA-AVTAVEIDPVLAERLPLTVAEHSHSEIHRLTVLNRDVLTLGPDELA--AEPNAVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + ++ P +++T++ Q EV ER+ A+ YG SV + Sbjct: 136 ANLPYNVAVPALLHLLAD---FPSIQTVTVMVQAEVAERLAAEPGGKDYGVPSVKVRFFG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLR 238 +SP VF+P P+V S ++ + P P + ++ AF +RRKT R Sbjct: 193 TVRRCGTVSPAVFWPIPRVYSGLVRIDRYPTAPWPTDEAFRRQVFRLVDIAFAQRRKTAR 252 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + G N L A I+ R E LS++DF R+ T+ D A Sbjct: 253 NAFVDWAGSGNESANRLLAASIDPARRGETLSVDDFVRLLRRSTEPADTA 302 >gi|294674235|ref|YP_003574851.1| dimethyladenosine transferase [Prevotella ruminicola 23] gi|294473004|gb|ADE82393.1| dimethyladenosine transferase [Prevotella ruminicola 23] Length = 263 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 12/266 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ PKK +GQ+FL DLNI K+IA++ + I V+E+G G G +TQ L+ R V+E Sbjct: 3 QVRPKKNLGQHFLTDLNIAKRIADTVDACPNIPVLEVGPGMGVMTQYLVE-KPRPFKVVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++ L++ + + II D L++D + F+ + N PY+I +++ F Sbjct: 62 IDRESVAYLQENFPRLNDN--IIGGDFLRMDLREVFD-GQQFVLTGNYPYDISSQIFFKM 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P T + Q EV R+ +Q + YG LSVL +F + P VF P Sbjct: 119 LDNKDLIP---CCTGMIQHEVAVRMASQPGNKQYGILSVLIQAWYNVEYLFTVEPGVFNP 175 Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + C + +++ + F +RRK LR SL+++ N AG Sbjct: 176 PPKVQSAVIRMTRNEVTDLGCDEQLFRRVVKATFNQRRKMLRVSLRQIFDANHPAPAGFF 235 Query: 257 T----NLRAENLSIEDFCRITNILTD 278 R E LSI F +TN + Sbjct: 236 DDEIMTRRPEQLSIPQFIELTNKVAS 261 >gi|190570949|ref|YP_001975307.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019465|ref|ZP_03335271.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226732639|sp|B3CPY6|RSMA_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|190357221|emb|CAQ54639.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994887|gb|EEB55529.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 264 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 106/264 (40%), Positives = 151/264 (57%), Gaps = 8/264 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I+K+I +GSL VIEIG G G LT+ +L + + Sbjct: 1 MRKFLLKPKKSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD + + ++H + II+ DAL V ++ + P+++IANLPYNI L Sbjct: 61 LSIEKDSSLVKHHEQLLNEHQGKYRIIEADALNVVEKEL--VECPVKVIANLPYNISVAL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 W++ F+ +LTL+FQKEV ERITA+ NS YG LSVL+ FDI P Sbjct: 119 FLKWLNN---IKFFTNLTLMFQKEVAERITAEPNSKDYGSLSVLSQLLCDIKKEFDIEPK 175 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLL 250 FFP PKV S+VI P P LE+L K+T+ F +RRK LR SL+ + + L Sbjct: 176 EFFPRPKVYSSVITVKPLPTPRFAVNLETLTKLTRAVFAQRRKMLRNSLQSITSDVSTTL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 A + + R E+L+IE FC + N Sbjct: 236 ENAKLSGDERPESLTIEQFCLLAN 259 >gi|215426288|ref|ZP_03424207.1| dimethyladenosine transferase [Mycobacterium tuberculosis T92] Length = 377 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 16 RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L+ ++H +RL ++ D L + E ++P ++ Sbjct: 76 DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 132 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + + P +T++ Q EV ER+ A+ S YG SV + Sbjct: 133 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 189 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + ++ ++ + AF +RRKT R Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + + G N L A I+ R E LSI+DF R+ Sbjct: 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 >gi|323706303|ref|ZP_08117869.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534355|gb|EGB24140.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum LX-11] Length = 273 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 140/273 (51%), Gaps = 16/273 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK +GQNF+ D IL KI + SG VIEIGAG G LT+ +L A V+ E Sbjct: 6 GFNTKKRLGQNFIFDEGILSKIVDLSGITKNDNVIEIGAGLGTLTRKILE-KANMVVSYE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134 D++ + ILK N L ++ DD +KVD + + +++ANLPY I + ++ Sbjct: 65 IDKEAYEILKADFKGRDN-LIVLNDDIMKVDLRETVDAYFGGEKCKVVANLPYYITSPII 123 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + + + +T++ QKEV ERI A+ YG L+V + +K ++ ++ P V Sbjct: 124 MKLLESR----LMKDITIMVQKEVAERICAKPGGKDYGVLTVAVNYYSKPEILLNLPPEV 179 Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247 F P PKV+S++I P + +I + +FG+RRK + SLK L + Sbjct: 180 FSPKPKVSSSLIKLHVLDKPSVFVKDEKLFFRIVKSSFGQRRKVITNSLKSLSIDQSIIA 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + L + GI+ R E LSIE F + N + D + Sbjct: 240 DALTKCGIDLKQRGETLSIEKFAELANTIYDMK 272 >gi|291543732|emb|CBL16841.1| dimethyladenosine transferase [Ruminococcus sp. 18P13] Length = 285 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 16/289 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ + + K +GQNFL++ + +IAE + G V+EIG G G Sbjct: 1 MENLTNISVVQDLARRHGFHFSKGLGQNFLINPTVCPRIAELGNARPGFGVLEIGTGFGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT L A KV+ +E DQ+ P+L++ + N ++I+ D +K+D Sbjct: 61 LTAELAKR-ADKVVAVEIDQRLLPVLEETLADFDN-VKIVPGDIMKIDVAALLRQEFGGL 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + +L + + S+T++ QKE +R+ AQ + G ++V Sbjct: 119 PVAVCANLPYYITSPILMLLLESRLP---LTSITVMVQKEAAQRLCAQVGTREAGAITVG 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + +A +F +S F P+P V S VI H NP P L+ ++ + F +RRK Sbjct: 176 VHYYGEARQLFPVSRGSFMPAPNVDSAVIRIDLHENPHPEGLDEGFFFRMVKAGFSQRRK 235 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 TL SL L G L QAG+ R E L++E + IL Sbjct: 236 TLANSLASLLGIPKQAVYAALEQAGLAPAARIEQLTMEQLFALARILQS 284 >gi|326336599|ref|ZP_08202768.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691264|gb|EGD33234.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 259 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 102/267 (38%), Positives = 139/267 (52%), Gaps = 12/267 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + PKKY+GQ+FL DLNI ++IA + V+EIGAG G LTQ LL L + Sbjct: 1 MKKSPVQPKKYLGQHFLTDLNIAQQIANTLSFDGYKIVLEIGAGTGVLTQFLL-LKKTET 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 VIE D++ L+ Q N II D LK D +F+ + II N PYNI +++ Sbjct: 60 FVIEIDKESVEYLQVHFPQLKN--HIIAKDFLKFDIVSYFS-KASFAIIGNFPYNISSQI 116 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + + P + + FQKEV ERI + S YG LSVLT +F + + Sbjct: 117 IFKLLEIRFFVPEFAGM---FQKEVAERICEKAGSKAYGILSVLTQAFYDTEYLFTVPEN 173 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 VF P PKV S VIH N +PC I + FG+RRKTLR SLK E + Sbjct: 174 VFNPPPKVKSGVIHLKRKENYSLPCDERLFFTIVKTTFGQRRKTLRNSLKSFLSEK--EE 231 Query: 253 AGIET--NLRAENLSIEDFCRITNILT 277 + + + R E LS+E+F +T LT Sbjct: 232 LKVHSVFDRRPETLSVEEFITLTQWLT 258 >gi|253700557|ref|YP_003021746.1| dimethyladenosine transferase [Geobacter sp. M21] gi|251775407|gb|ACT17988.1| dimethyladenosine transferase [Geobacter sp. M21] Length = 275 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 143/278 (51%), Gaps = 17/278 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK GQNFL+D ++L +I ++E+G G G L+++L GAR + +E Sbjct: 3 KIRAKKEFGQNFLVDDSVLTRIVACVAPTADDCILEVGPGRGALSRLLAESGAR-FLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134 D++ P+LK + N +EI D L+VD ++ ANLPYNI +++L Sbjct: 62 WDRELLPLLKAEFATAQN-VEIGHGDILRVDLPLLLGSRVEGKKWKVAANLPYNISSQVL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F ++ +E L L+ QKEVG+R+TA YG L+VL F + P Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ F+P P E +++ + AF +RRKTL SL+ G ++ Sbjct: 178 FRPVPKVDSAVLSFLPLPGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L ++GI+ R E LS+E+F R+T L + +A Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFARLTRELLAGKTLA 275 >gi|332982498|ref|YP_004463939.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON] gi|332700176|gb|AEE97117.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON] Length = 299 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 85/291 (29%), Positives = 128/291 (43%), Gaps = 24/291 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + +++ ++ Y P K MGQNFL++ L I + V+EIG G G LT Sbjct: 8 SSKSAVQRLIDRYNFKPNKAMGQNFLINKEALNAIVNGADISAEDEVLEIGPGLGTLTLK 67 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRI 121 L A V +E D++ P+LK N + II+ D L + + Sbjct: 68 LSERAAH-VTAVEVDKRIIPLLKQTLQDVGN-VSIIEGDFLNPMVAEEIKECLAGKSAIV 125 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS------PHYGRLS 175 +ANLPY I T +L + I + L+ QKEV R+ AQ S YG LS Sbjct: 126 VANLPYYITTPVLMDIIEN---YIMIKRAVLMMQKEVAYRVVAQPGSRLSGSVKDYGVLS 182 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKR 233 + + ++ ++ F PSP V S V+ P + + AFG+R Sbjct: 183 ISVQYYMDPQILLEVPRSDFLPSPDVDSAVVRLDRRDKPAVDVQDERMFFSLVKAAFGQR 242 Query: 234 RKTLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RKTL +L + G + +L +A I+ N RAE LS+++F I N L Sbjct: 243 RKTLFNALAGGLGYPLGKDGLKRVLERAHIDGNRRAETLSLQEFADIANEL 293 >gi|227486185|ref|ZP_03916501.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC 51172] gi|227235816|gb|EEI85831.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC 51172] Length = 280 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 13/285 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +K I+ Y K +GQNFL+D N + KI E + G VIE+G G G Sbjct: 1 MRKLYSPKVVKDIIDLYGFRFSKSLGQNFLIDKNFVDKIVEGADI-AGKNVIEVGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 ++ + +K+++IE D PIL++ S N + II D LK D +K + Sbjct: 60 ISYEMAKTC-KKLVLIEIDSSLIPILEENMSDFDN-VTIIHQDILKTDLKKIQDEYFGGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++NLPY I T ++ D S+T++ QKEV +R+ A + Y LSV Sbjct: 118 AFDFVSNLPYYITTPIIEKIFEEDL---DCHSMTIMVQKEVADRMLATEKDKDYSSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + ++A ++ + VF P PK+ S+V+ + E L + + F KRRKT+ Sbjct: 175 VKYYSEARLLTKVPKSVFMPQPKIDSSVLRLDLRIYDEKVNKERLFALVKAGFLKRRKTI 234 Query: 238 RQSLKRLGGENLLHQ----AGIETNLRAENLSIEDFCRITNILTD 278 SL + ++ L + ++ NLRAENLS++D+ +I N L + Sbjct: 235 LNSLSAVAEKDDLKKVFEILNLKENLRAENLSLDDYIKIVNELEN 279 >gi|297537784|ref|YP_003673553.1| dimethyladenosine transferase [Methylotenera sp. 301] gi|297257131|gb|ADI28976.1| dimethyladenosine transferase [Methylotenera sp. 301] Length = 259 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 12/265 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I KK GQNFL D ++ + ++ ++EIG G G LT+ LL + + V+E Sbjct: 2 KHIAKKRFGQNFLTDQGVISSLVDAISPKADDLMVEIGPGLGALTKPLLQRL-KLLHVVE 60 Query: 78 KDQQFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 D+ ++ + + + I DALK DF+ +R+ NLPYNI T +L Sbjct: 61 VDRDIIAWMQAEYGKRAYASSAISIHNADALKFDFKSL---GDNLRVTGNLPYNISTPIL 117 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + + + QKEV ER+ A ++ YGRLSV+ +R + + + P Sbjct: 118 FHLLDNVSA---ITDMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMDYLITVPPEA 174 Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P+PKV S + +PH P E+ K+ AFG+RRKTLR +LK L + Sbjct: 175 FEPAPKVESAFVRCVPHAVLPFVAKDEAIFAKVVLAAFGQRRKTLRNTLKELLNDEGFTA 234 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 I++ RAENL++ DF I N L+ Sbjct: 235 LNIDSQQRAENLAVSDFVAIANYLS 259 >gi|169824244|ref|YP_001691855.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328] gi|167831049|dbj|BAG07965.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328] Length = 283 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%) Query: 3 MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M+ K H +K IL + K +GQNFL+D N+++ I + S + VIEIG G G Sbjct: 1 MSYKLHQPSCIKEILDKFGFKFSKSLGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 LT+ L+ + + IE D + +LK N +II +D LKVD + + Sbjct: 61 TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKF 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + + ES+T++ QKEV R+ A S Y LS+ Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMVQKEVANRMVADVGSKDYASLSLFVK 175 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + A ++ + VF P PKV S V++ E L+++ + F KRRKT+ Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILN 235 Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 S + +L + G++ NLRAENLS+ED+ I L+ Sbjct: 236 SFTSGFVNVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280 >gi|300812073|ref|ZP_07092521.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496912|gb|EFK31986.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 296 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 151/297 (50%), Gaps = 25/297 (8%) Query: 3 MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M N+ + ++T I++ Y + KK +GQNFL+DL+ ++ I ++G G V+E+G G Sbjct: 1 MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111 G+LT+ LL G KV E DQ IL + R ++I D LK DF Sbjct: 61 IGSLTEQLLLAGG-KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119 Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 FF++ P++++ANLPY I T ++FN + + + SLTL+ QKEV ER+ AQ Sbjct: 120 DLAGFFDLGKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226 S YG LS+ + + ++ F P PKV S V+ P P + ++ Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + F +RRKTL +LK L E LL ++ R E L+I DF RI+ + + Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLDDLDLDPRQRPEQLAIGDFIRISQAIAE 293 >gi|297543652|ref|YP_003675954.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841427|gb|ADH59943.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 273 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 145/271 (53%), Gaps = 16/271 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK GQNF+ D NIL KI +SG + V+EIG G G LT+ L +KVI E Sbjct: 5 GVNVKKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAKR-VKKVISFE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134 D++ + + K+ + + N + II +D +K D K N P +++ANLPY I + ++ Sbjct: 64 IDRELYAVAKEKLNIYDN-VIIINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPII 122 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + F + +T+L QKEV ERI A + YG L+V ++ K M+F++ P V Sbjct: 123 MMLLDCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTV 178 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLH 251 F P PKV S+++ +P+ E + + AFG+RRK L +LK LG + ++ Sbjct: 179 FVPPPKVDSSLVKLEILDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIID 238 Query: 252 QA----GIETNLRAENLSIEDFCRITNILTD 278 +A + R E LSIE+F + N++ D Sbjct: 239 KAFTLSNLSPQRRGETLSIEEFAVLANVIYD 269 >gi|33598179|ref|NP_885822.1| dimethyladenosine transferase [Bordetella parapertussis 12822] gi|62900579|sp|Q7W4J6|RSMA_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33566737|emb|CAE38949.1| dimethyladenosine transferase [Bordetella parapertussis] Length = 265 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 11/254 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ+FL D ++++ I + G V+EIG G LT+ LL + +E Sbjct: 4 HQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDR-IDHLTAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ RL +++ DAL VDF +F +R++ NLPYNI + LLF+ + Sbjct: 63 DRDLAARLRRQYPA--ERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLM 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 A + Q+EV +R+ A+ S Y RLSV+ R + M+FD++P F P Sbjct: 118 GAAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEMLFDVAPEAFDPP 174 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S V+ P P + + + AF +RRK LR+ L + GI Sbjct: 175 PRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIA 234 Query: 257 TNLRAENLSIEDFC 270 RAE + + F Sbjct: 235 PTARAEEVGVAQFI 248 >gi|94676936|ref|YP_588992.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|122064282|sp|Q1LSS2|RSMA_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94220086|gb|ABF14245.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 271 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 138/265 (52%), Gaps = 8/265 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + +K +GQ+FL D NI++ I L ++EIG G G LT+ + + + VI Sbjct: 7 QGHLVRKCLGQHFLHDQNIIESIVAVIHPLPSQALVEIGPGLGALTKYVAKY-VKTITVI 65 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLF 135 E D L + ++L I+ D +KV+F +S P+RI NLPYNI L+F Sbjct: 66 ELDHNLVAYLANH-PILQHKLNILSQDVMKVNFSDLAKKLSQPLRIFGNLPYNISIALMF 124 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 N + + QKEV R+ A+ N+ +YG+LSV+ + ++ D+ P F Sbjct: 125 NLF---RHIHMIRDMHFMLQKEVVSRLLAKPNNKNYGKLSVIAQHYCQIDLVLDVPPESF 181 Query: 196 FPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P+V S V+ +P++ P P + L +T AF +RRKT+R SL+ L L Sbjct: 182 RPVPQVDSAVVRLVPYVIPPYPVKDINKLYLLTSLAFQQRRKTIRNSLRNLFSVEQLLTQ 241 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 GI + LRAENLS+E +C + + L + Sbjct: 242 GIISTLRAENLSVEQYCCLASTLAE 266 >gi|312623284|ref|YP_004024897.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis 2002] gi|312203751|gb|ADQ47078.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis 2002] Length = 282 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M L +L Y + P K +GQNFL+D N+++KI +G VIEIGAGPG Sbjct: 1 MNPAITKTDLLNLLEKYGLSPNKKLGQNFLVDENVVRKII-LFSQAEGKEVIEIGAGPGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L A+KV +E D++ +LKD+ N ++I+ D L+++ + N + + Sbjct: 60 LTVYLAKT-AQKVFAVEIDKKILNVLKDVCQSLSN-VQIVNSDFLELNVKNLTN-GNKVY 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +I NLPY + +++LF E T++ QKEV +R+ A+ + YG L+V + Sbjct: 117 VIGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + F +S +VF+P P+V S V+ + + KI F RRKT+ + Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNA 233 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + ++ AG++ NLRAE+LS++D+ R+ + Sbjct: 234 LSNQLDIAKDELKKIILMAGLDENLRAEDLSLDDYIRLYQCFKE 277 >gi|255015789|ref|ZP_05287915.1| dimethyladenosine transferase [Bacteroides sp. 2_1_7] gi|256841738|ref|ZP_05547244.1| dimethyladenosine transferase [Parabacteroides sp. D13] gi|262384068|ref|ZP_06077204.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B] gi|298377078|ref|ZP_06987032.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19] gi|256736632|gb|EEU49960.1| dimethyladenosine transferase [Parabacteroides sp. D13] gi|262294966|gb|EEY82898.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B] gi|298266062|gb|EFI07721.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19] Length = 266 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 9/256 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + + V+EIG G G LTQ LL G + V+E Sbjct: 4 VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L R II +D LK+D K F +I N PYNI +++ F + Sbjct: 63 DMESVDYLNQNFPDLKGR--IIAEDFLKLDLSKLF--PGQFCVIGNYPYNISSQIFFKVL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + QKEV ER+ A S YG LSVL +F +S VF P Sbjct: 119 DYKDQIP---CCSGMLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVSEKVFDPP 175 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + C + K + + +F +RRKTLR S+K L G++ A Sbjct: 176 PKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYALPIF 235 Query: 258 NLRAENLSIEDFCRIT 273 + R E LS+E F +T Sbjct: 236 DKRPEQLSVEQFVELT 251 >gi|305665472|ref|YP_003861759.1| dimethyladenosine transferase [Maribacter sp. HTCC2170] gi|88710228|gb|EAR02460.1| dimethyladenosine transferase [Maribacter sp. HTCC2170] Length = 289 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 90/269 (33%), Positives = 141/269 (52%), Gaps = 14/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D +I K+IAE+ + VIEIG G G LT+ LL ++ ++ Sbjct: 25 VKAKKHLGQHFLKDESIAKQIAETLSFVGYKNVIEIGPGTGVLTKYLLQNEID-LVAMDL 83 Query: 79 DQQFFPILKDISS-QHP------NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D + L + + +HP + L++++ D LK + F+ S P I N PYNI T Sbjct: 84 DSESIVYLNNNFALEHPEILGKKSSLKVVEADFLKYNLGLLFD-SEPFAITGNFPYNIST 142 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F + P + + FQKEV ERI A + + YG LSVLT A +F + Sbjct: 143 QIVFKMLELKAQVPEFSGM---FQKEVAERICASEGNKTYGILSVLTQAFYNADYLFTVE 199 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P VF P PKV S V+ + + + C ++ + AF +RRKTLR SLK N+L Sbjct: 200 PEVFDPPPKVHSGVMRLVRKDDFELGCDERLFFRVVKTAFNQRRKTLRNSLKSFDLSNIL 259 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + I + R E L++ +F + + D+ Sbjct: 260 KEDAI-FDQRPEQLTVSEFIELAKKIADD 287 >gi|167585502|ref|ZP_02377890.1| dimethyladenosine transferase [Burkholderia ubonensis Bu] Length = 275 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 119/263 (45%), Gaps = 13/263 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H +K GQNFL+D ++ I + G G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPES 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ L+ LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIVRLQQRFGPL---LELHAGDALAFDFRSLAAAGDKPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R M D Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKMMD 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFC 270 G + RAE++S+ ++ Sbjct: 240 VDFDALGFDLARRAEDVSVAEYV 262 >gi|319953425|ref|YP_004164692.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237] gi|319422085|gb|ADV49194.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237] Length = 289 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 91/269 (33%), Positives = 136/269 (50%), Gaps = 14/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D +I K+IAE+ IEIG G G LT+ +L ++ ++ Sbjct: 25 VKAKKHLGQHFLKDEDIAKQIAETLTFKGYENAIEIGPGTGVLTKYILEQDIN-LVAMDL 83 Query: 79 DQQFFPILKDISS-QHPN------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D + L D +HP ++I+ D LK D F I N PYNI T Sbjct: 84 DSESIVYLNDSFLLEHPKFIGRKKEFKVIEADFLKYDVSTLFGDEQ-FAITGNFPYNIST 142 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F + P + + FQKEV +RI ++ S YG LSVL A +F + Sbjct: 143 QIVFKLLEIRNLVPEFSGM---FQKEVAQRICEKEGSKTYGILSVLVQAFFDAEYLFTVP 199 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P VF P PKV S V+ N + C +SL ++ + AFG+RRKT+R SLK + L Sbjct: 200 PTVFNPPPKVESGVLRLTRKENQTLDCNEKSLYRVVKAAFGQRRKTIRNSLKTFNLSDSL 259 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + I + R E LS+ DF +TN + ++ Sbjct: 260 REDTI-FDKRPEQLSVTDFISLTNKIDND 287 >gi|298207337|ref|YP_003715516.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559] gi|83849973|gb|EAP87841.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559] Length = 269 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 85/268 (31%), Positives = 129/268 (48%), Gaps = 13/268 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D +KI + V+EIG G G LT+ LL + ++ Sbjct: 5 VRAKKHLGQHFLNDEETAEKIGNTLSFKGYDHVLEIGPGTGVLTKYLLEKDV-ALTAMDL 63 Query: 79 DQQFFPILKDISS-QHPNR-----LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 DQ+ LKD S +H ++ ++ D LK D + F I N PYNI T+ Sbjct: 64 DQESVDYLKDHFSIEHASKISSKSFRVLYADFLKYDLSQLFGDEQ-FAITGNFPYNISTQ 122 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F + P + + FQKEV +RI ++ S YG LSVL A +F + P Sbjct: 123 IVFKTLELRDQIPEFTGM---FQKEVAKRICEKEGSKAYGILSVLAQAFYNAEYLFTVPP 179 Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 VF P PKV S V+ + + + ++ ++AF +RRKTLR SLK + L Sbjct: 180 TVFNPPPKVESGVLRLTRKEDYSLNVDEKLFFRVVKQAFQQRRKTLRNSLKTFQLSDELR 239 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 I N R E LS+ F +T ++ + Sbjct: 240 VNDI-FNKRPEQLSVAAFLELTALIQKD 266 >gi|91205019|ref|YP_537374.1| dimethyladenosine transferase [Rickettsia bellii RML369-C] gi|119365058|sp|Q1RK29|RSMA_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91068563|gb|ABE04285.1| Dimethyladenosine transferase [Rickettsia bellii RML369-C] Length = 268 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 101/272 (37%), Positives = 151/272 (55%), Gaps = 9/272 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + ++I P K GQNF+ D ++ KI +SG + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILH 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + + VIE D++ P+L +I HPN L II+ DALK+ ++ I II+NLPY Sbjct: 63 KNPKLLTVIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDL--NTNKITIISNLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ W+ + S+TL+ QKEV ERI A+ ++ YGRLSV+ Sbjct: 120 HIGTELVIRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKC 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246 FD++P F+P PKV S ++ P N L ++ IT+ AF RRK ++ SLK L Sbjct: 177 FDVAPTAFYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAP 236 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL + I N RAENL+ D+ + +++ Sbjct: 237 NISELLAKLNISDNCRAENLTPNDYLSLASLI 268 >gi|305681981|ref|ZP_07404785.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC 14266] gi|305658454|gb|EFM47957.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC 14266] Length = 289 Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 15/278 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQM 64 ++T+ S I P K +GQNFL D N ++ I ++ D V+E+G G G+LT Sbjct: 9 PADIRTLASELDITPTKKLGQNFLHDPNTVRMIVTTAQFTDVTNRHVLEVGPGLGSLTLG 68 Query: 65 LLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 L+T KV IE D + L + + + +RL + DAL V + + P Sbjct: 69 LVTAC-EKVTAIEIDPRLAARLPRTIAEFAPDYADRLTVSNRDALTVSPQDIDMSTPPTA 127 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ +L + ++ P + ++ Q EV +R+ A+ + YG SV + Sbjct: 128 LVANLPYNVSVPILLHLLAE---FPSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAF 184 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+PK+ S ++ +++ + AF +RRKTLR + Sbjct: 185 YGQVRRAGTIGKNVFWPAPKIDSGLVSIDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAA 244 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L + G E L +A I+ LR E L I DF R+ Sbjct: 245 LSGVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLA 282 >gi|298253263|ref|ZP_06977055.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1] gi|297532658|gb|EFH71544.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1] Length = 298 Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 12/282 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI ++ G V+E+G G G+LT +L Sbjct: 20 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 79 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIR 120 GA ++ +E D L ++ Q + +I DAL V+ + I + Sbjct: 80 QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 138 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ + + + + QKEV +R+ AQ + YG SV W Sbjct: 139 LVANLPYNVATPIILTLLEKFSNLQNFLVMV---QKEVADRLCAQPGNKVYGTPSVKLAW 195 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238 KA I +VF+PSP V S ++ F + E + AF +RRKTL Sbjct: 196 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRNCTGKGDNNEREGVFAFIDAAFQQRRKTLH 255 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK E +GI+ R E L+ ++F + D + Sbjct: 256 AALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCK 297 >gi|111022636|ref|YP_705608.1| dimethyladenosine transferase [Rhodococcus jostii RHA1] gi|118600893|sp|Q0S4T6|RSMA_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110822166|gb|ABG97450.1| probable rRNA dimethyladenosine transferase [Rhodococcus jostii RHA1] Length = 296 Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 19/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I ++G TV+E+G G G+LT LL Sbjct: 19 PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + KVI +E D L D + + +RL ++ DA++V + P ++ Sbjct: 79 DV-VDKVIAVEIDPNLAARLPVTVADRAPELADRLTVVGADAMRVKPSEI--PGEPTALV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + S P + ++ Q EV +R+ A S YG SV + Sbjct: 136 ANLPYNVAVPVLLHLFSE---LPSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238 + VF+P PKV S ++ + P + + AF +RRKTLR Sbjct: 193 AVRRAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDAHRRRVFAVIDAAFAQRRKTLR 252 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +L G E L +AGI + R E L F R+ Sbjct: 253 AALGGWAGSPAEAERRLLEAGIAPSARGETLDAAAFVRLA 292 >gi|313884585|ref|ZP_07818346.1| dimethyladenosine transferase [Eremococcus coleocola ACS-139-V-Col8] gi|312620369|gb|EFR31797.1| dimethyladenosine transferase [Eremococcus coleocola ACS-139-V-Col8] Length = 296 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 22/287 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 I+ +Y I KK +GQNFL++ NIL K+ ++ TVIEIG G G LT+ L Sbjct: 10 PTRTAQIMKYYDIAMKKSLGQNFLIEPNILDKMVAAADIDSDTTVIEIGPGIGALTEFLA 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122 L A++V+ E D +F IL++ + + N +++I D LKVDF+ + ++ Sbjct: 70 -LSAKQVLAFEIDARFVSILENTLAAYDN-VKVIHQDILKVDFQAPEYASLKDLDRLVVV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T ++ + I + ++ L ++ QKEV ER+TAQ + Y L++ + Sbjct: 128 ANLPYYITTPIIMHLIDSHLP---FDRLVMMMQKEVAERMTAQVGTKAYNSLTIAIQLQM 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 +A + F + +VF P P V S V+ P L + Q AF RRKTL + Sbjct: 185 QARLDFIVPKNVFIPKPNVDSAVLVLERLATPRLDLADLSDFQNFVQAAFVYRRKTLWNN 244 Query: 241 LKRLGG-----------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K E + QA ++ R E+LS+E+F ++ Sbjct: 245 YKNAMSTNLADLSADQWEAIFDQAELDRQRRGESLSLEEFGQLYQAY 291 >gi|312128457|ref|YP_003993331.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis 108] gi|311778476|gb|ADQ07962.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis 108] Length = 282 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 150/284 (52%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M L ++L Y + P K +GQNFL+D N+++KI +G VIEIGAGPG Sbjct: 1 MNAAITKSELLSLLEKYGLSPNKKLGQNFLVDENVVRKII-LFSQTEGKEVIEIGAGPGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L A+KV+ +E D++ +LKD+ N ++I+ D L+++ + N ++ + Sbjct: 60 LTVYLAKT-AQKVVAVEIDKKILNVLKDVCQNLSN-VQIVNSDFLELNVKNLTN-NNKVY 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPY + +++LF + E T++ QKEV +R+ A+ + YG L+V + Sbjct: 117 VVGNLPYYVTSQILFKLFKERK---YIEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + F +S +VF+P P+V S V+ + + KI F RRKT+ + Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKKFFKIVHACFSTRRKTILNA 233 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + ++H AG++ NLRAE+LS++++ R+ + Sbjct: 234 LSNQLDIAKDDLKMIIHMAGLDENLRAEDLSLDNYIRLYQCFEE 277 >gi|150024182|ref|YP_001295008.1| dimethyladenosine transferase [Flavobacterium psychrophilum JIP02/86] gi|166221664|sp|A6GVR5|RSMA_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149770723|emb|CAL42187.1| Dimethyladenosine transferase [Flavobacterium psychrophilum JIP02/86] Length = 259 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 129/260 (49%), Gaps = 9/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D +I K IA++ V+EIG G G LT+ LL VIE Sbjct: 4 VKAKKHLGQHFLKDESIAKDIADTLNLEGYDNVLEIGPGMGVLTKYLLAKEV-TTYVIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + ++ II D LK + + F II N PYNI T+++F + Sbjct: 63 DTESVTYLDQNYPKLKDK--IISKDFLKYNINEIFE-GKQFAIIGNFPYNISTQIVFRAL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + FQKEV +RI +K + YG LSVL A +F + VF P Sbjct: 120 EYRNQIPEFAGM---FQKEVAQRICEKKGTKAYGILSVLVQAFYDAEYLFTVDETVFIPP 176 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + +PC + + + AF +RRKTLR SLK L ++L + + Sbjct: 177 PKVKSGVLRLRRKKDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLNLSDILREDEV-F 235 Query: 258 NLRAENLSIEDFCRITNILT 277 NLR E L ++ F +T + Sbjct: 236 NLRPEQLDVQQFIELTKKIE 255 >gi|222056012|ref|YP_002538374.1| dimethyladenosine transferase [Geobacter sp. FRC-32] gi|221565301|gb|ACM21273.1| dimethyladenosine transferase [Geobacter sp. FRC-32] Length = 275 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 15/267 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK MGQNFL+D N+L +I E+ V+EIG G G LT +L+ A +V+ +E Sbjct: 3 KIRAKKSMGQNFLVDGNVLSRIVEAVVLEPSDRVLEIGPGRGALTSLLVKR-AEQVLAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+Q P+L+ S N +E IQ D LK++ + + ++ ANLPYNI ++++F Sbjct: 62 LDRQLVPLLEKEFSGADN-VEFIQGDILKIELPEVLGSRWNGRWKVAANLPYNISSQVIF 120 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ + + SL L+ QKEVG+R+ A + YG LSV + + + P F Sbjct: 121 KFLDNVS---LFSSLILMLQKEVGDRLIASPGTKEYGILSVFCNLHFNISRVLIVKPGSF 177 Query: 196 FPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----- 248 P PKV S V+ F+P P +++ + +F +RRKTL L+ + Sbjct: 178 RPIPKVDSVVLKFVPLAAPRQDVGDETLFRQVVKASFSQRRKTLANCLRSALIADNDDLN 237 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITN 274 +L QAGI+ R E L++E++ ++T Sbjct: 238 LILSQAGIDGGRRGETLTLEEYAQLTR 264 >gi|282880957|ref|ZP_06289648.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1] gi|281305180|gb|EFA97249.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1] Length = 270 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 131/263 (49%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DLNI K+IA++ + I V+E+G G G +TQ L+ R++ +E Sbjct: 4 VRPKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEVGPGMGVMTQYLVE-KPREIKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + II D L++D +K F P + N PY+I +++ F + Sbjct: 63 DRESVAFLHTHFPKLQGN--IIGQDFLRMDLQKVFE-GRPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV RI ++ YG LSVL +F + +VF P Sbjct: 120 ENKELIP---CCTGMIQREVALRIASEPGHKAYGILSVLIQAWYDVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AG 254 PKV S VI + + C + K++ + F +RRK LR SL++L N AG Sbjct: 177 PKVKSAVIRMTRNATTDLGCNEQLFKRLVKAVFNQRRKMLRVSLRQLFTGNNASAEFYAG 236 Query: 255 IETNLRAENLSIEDFCRITNILT 277 +R E LSI+ F +TN + Sbjct: 237 ELMTMRPEQLSIQQFVDLTNRVE 259 >gi|288924741|ref|ZP_06418678.1| dimethyladenosine transferase [Prevotella buccae D17] gi|288338528|gb|EFC76877.1| dimethyladenosine transferase [Prevotella buccae D17] Length = 269 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 13/264 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DLNI ++IA++ + G+ V+EIG G G LTQ L+T R+V +E Sbjct: 4 VKPKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + R II +D L++D F P + N PY+I +++ F + Sbjct: 63 DRESVAYLHETFPTL--RDNIIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ ++ + YG LSVL +F + VF P Sbjct: 120 DNRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDEDVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + + C K++ + F +RRK LR SLK+L A Sbjct: 177 PKVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSGEFFTA 236 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 + R E L+I F +TN++ Sbjct: 237 EV-MTRRPEQLTIAQFVELTNVVE 259 >gi|225016807|ref|ZP_03705999.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum DSM 5476] gi|224950475|gb|EEG31684.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum DSM 5476] Length = 290 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K IL+ + K +GQNFL++ I KIAE G+ G VIE+G G G Sbjct: 1 MQNLSNISVIKEILNRHGFTFSKSLGQNFLINPGICPKIAELGGARPGGGVIEVGTGIGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---S 117 LTQ L A KV+ +E D + P+L + ++ N ++I+ D LKVD + Sbjct: 61 LTQELAKR-ADKVVAVEIDSRLLPVLDETLAEFDN-VKIVNQDILKVDLKLLIAEEFGNM 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + +L + ES+T + QKE G RI A+ + G +S+ Sbjct: 119 PVTVCANLPYYITSPILMRLLEERLP---IESVTAMVQKEAGVRICAEPGTREVGAVSLA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + + ++F++S F P+P V S V+ + ++ + AF +RRK Sbjct: 176 VRYFSDPKILFNVSRGSFLPAPNVDSCVVRLDVRGETPRGVADEKFFFQLVRAAFSQRRK 235 Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 TL + + G L + I+ RAE L + +F ++N L Sbjct: 236 TLVNPVSSALGISKDGVRQALLDSRIKPTARAEELKLYEFIELSNYL 282 >gi|157827650|ref|YP_001496714.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389] gi|166221696|sp|A8GXS7|RSMA_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157802954|gb|ABV79677.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389] Length = 268 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 101/272 (37%), Positives = 151/272 (55%), Gaps = 9/272 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + ++I P K GQNF+ D ++ KI +SG + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILH 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + + VIE D++ P+L +I HPN L II+ DALK+ ++ I II+NLPY Sbjct: 63 KNPKLLTVIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDL--NTNKITIISNLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ W+ + S+TL+ QKEV ERI A+ ++ YGRLSV+ Sbjct: 120 HIGTELVIRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKC 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246 FD++P F+P PKV S ++ P N L ++ IT+ AF RRK ++ SLK L Sbjct: 177 FDVAPTAFYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAP 236 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL + I N RAENL+ D+ + +++ Sbjct: 237 NISELLAKLNISNNCRAENLTPNDYLSLASLI 268 >gi|197101331|ref|NP_001126887.1| dimethyladenosine transferase 1, mitochondrial [Pongo abelii] gi|75054716|sp|Q5R4V9|TFB1M_PONAB RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|55733044|emb|CAH93207.1| hypothetical protein [Pongo abelii] Length = 343 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLLRVQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFVPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PDVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L+ L E LL A ++ LR SI F + ++ D Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSLCDVYRKMCD 312 >gi|281420569|ref|ZP_06251568.1| dimethyladenosine transferase [Prevotella copri DSM 18205] gi|281405342|gb|EFB36022.1| dimethyladenosine transferase [Prevotella copri DSM 18205] Length = 270 Score = 254 bits (650), Expect = 8e-66, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 13/265 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DLNI K+IA++ + I V+EIG G G LTQ L+ R V +E Sbjct: 4 VKPKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPRVVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + + II +D L++D + F+ + N PY+I +++ F + Sbjct: 63 DSESVAYLHENFPTLKDN--IIGEDFLRMDLNQIFD-GKQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ ++ + YG LSVL +F + +VF P Sbjct: 120 DYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLIQAWYDVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + C + K++ + F +RRK LR SLK++ Sbjct: 177 PKVKSAVIRMTRNKVTDLGCDEKLFKRLVKTVFNQRRKMLRVSLKQMFPGVTPREEFFTT 236 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 I R E L+I+ F +TN + + Sbjct: 237 DI-MTKRPEQLTIQQFVELTNYVGE 260 >gi|33603074|ref|NP_890634.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50] gi|62900581|sp|Q7WG20|RSMA_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33568705|emb|CAE34463.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50] Length = 265 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 120/254 (47%), Gaps = 11/254 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ+FL D ++++ I + G V+EIG G LT+ LL + +E Sbjct: 4 HQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDR-IDHLTAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ RL +++ DAL VDF +F +R++ NLPYNI + LLF+ + Sbjct: 63 DRDLAARLRRQYPA--ERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLM 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 A + Q+EV +R+ A+ S Y RLSV+ R + +FD++P F P Sbjct: 118 GAAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPP 174 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S V+ P P + + + AF +RRK LR+ L + GI Sbjct: 175 PRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIA 234 Query: 257 TNLRAENLSIEDFC 270 RAE + + F Sbjct: 235 PTARAEEVGVAQFI 248 >gi|150009182|ref|YP_001303925.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC 8503] gi|166221684|sp|A6LF39|RSMA_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|149937606|gb|ABR44303.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC 8503] Length = 266 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 9/256 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + + V+EIG G G LTQ LL G + V+E Sbjct: 4 VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L R II +D LK+D K F +I N PYNI +++ F + Sbjct: 63 DMESVDYLNQNFPDLKGR--IIAEDFLKLDLSKLF--PGQFCVIGNYPYNISSQIFFKVL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + QKEV ER+ A S YG LSVL +F +S VF P Sbjct: 119 DYKDQIP---CCSGMLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVSEKVFDPP 175 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + C + K + + +F +RRKTLR S+K L G++ A Sbjct: 176 PKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYALPIF 235 Query: 258 NLRAENLSIEDFCRIT 273 + R E LS+E F +T Sbjct: 236 DKRPEQLSMEQFVELT 251 >gi|169642197|gb|AAI60475.1| tfb1m protein [Xenopus (Silurana) tropicalis] Length = 346 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 146/299 (48%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ + + +K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++V+EKD +F P LK ++ +++I+ D L ++ F + Sbjct: 74 LNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ AD PF +TL FQKEV ER+TA +S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + F I F P P+V V+HF P + P I + ++K+ + F Sbjct: 194 SRLSIMAQYLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L E +L A ++ LR L++ F ++ N+ + D Sbjct: 254 QFRRKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312 >gi|302345754|ref|YP_003814107.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC 25845] gi|302150103|gb|ADK96365.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC 25845] Length = 267 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 13/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I ++IA++ + I V+EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + + R I+ D L++D + F+ P + N PY+I +++ F + Sbjct: 63 DSESVAFLYEKFPKL--RENILGQDFLRMDLNEVFD-GRPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV +R+ A S YG LSVL +F + +VF P Sbjct: 120 EYKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + I C K++ + F +RRK LR SL+++ + ++ Sbjct: 177 PKVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQ 236 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I R E LSI F +TN++ + Sbjct: 237 DI-MTKRPEQLSIAQFVELTNMVDEQ 261 >gi|254774035|ref|ZP_05215551.1| dimethyladenosine transferase [Mycobacterium avium subsp. avium ATCC 25291] Length = 318 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 19/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 19 RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L ++H + RL ++ D L + ++ P ++ Sbjct: 79 DRGAH-VTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDELAE--PPTAVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + P P + ++ AFG+RRKT R Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPIDPAFRRQVFELVDIAFGQRRKTCR 252 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + G + L A I+ R E LSI+DF R+ D Sbjct: 253 NAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298 >gi|226365142|ref|YP_002782925.1| dimethyladenosine transferase [Rhodococcus opacus B4] gi|254807880|sp|C1AXY5|RSMA_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226243632|dbj|BAH53980.1| dimethyladenosine transferase [Rhodococcus opacus B4] Length = 296 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 127/280 (45%), Gaps = 19/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I ++G TV+E+G G G+LT LL Sbjct: 19 PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + +VI +E D L D + +RL ++ DA++V + P ++ Sbjct: 79 DV-VDRVIAVEIDPNLAARLPVTVADRAPDLADRLTVVGADAMRVKPSEI--PGEPTALV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + S P + ++ Q EV +R+ A S YG SV + Sbjct: 136 ANLPYNVAVPVLLHLFSE---LPSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238 + VF+P PKV S ++ + P + + AF +RRKTLR Sbjct: 193 AVRRAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDENRRRVFAVIDAAFAQRRKTLR 252 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +L G E L +AGI + R E L F R+ Sbjct: 253 AALGGWAGSPAEAERRLLEAGIPPSSRGETLDAAAFVRLA 292 >gi|283782577|ref|YP_003373331.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05] gi|283441107|gb|ADB13573.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05] Length = 302 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 12/282 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D ++KI ++ G V+E+G G G+LT +L Sbjct: 24 AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 83 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIR 120 GA ++ +E D L ++ Q + +I DAL V+ + I + Sbjct: 84 QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 142 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ + + + + QKEV +R+ AQ + YG SV W Sbjct: 143 LVANLPYNVATPIILTLLEKFSNLQNFLVMV---QKEVADRLCAQPGNKVYGTPSVKLAW 199 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238 KA I +VF+PSP V S ++ F + E + AF +RRKTL Sbjct: 200 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRNCTGKGDNNEREGVFAFIDAAFQQRRKTLH 259 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +LK E +GI+ R E L+ ++F + D + Sbjct: 260 AALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCK 301 >gi|327313931|ref|YP_004329368.1| dimethyladenosine transferase [Prevotella denticola F0289] gi|326944358|gb|AEA20243.1| dimethyladenosine transferase [Prevotella denticola F0289] Length = 279 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I +IA++ + I V+EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + + R II +D L++D + F+ + N PY+I +++ F + Sbjct: 63 DAESVAYLYEKFPRL--RENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ A S YG LSVL +F + +VF P Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + + C K++ + F +RRK LR SL++L + ++ Sbjct: 177 PKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADGFYEQ 236 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 I R E LSI +TN++ + ++A Sbjct: 237 DI-MTKRPEQLSIPQLVGLTNMVAEQLELA 265 >gi|166363194|ref|YP_001655467.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843] gi|166085567|dbj|BAG00275.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843] Length = 268 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 12/266 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI P+K GQ++L D +IL +I ++ V+EIG G G LT+ LL GA+ V+ +E Sbjct: 2 KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ + IL Q N +I D L + E+ ++ +++AN+PYNI +L Sbjct: 61 IDRDLWTILNKKFGQQDN-FHLIPGDFLSLKPEQLPPVN---KVVANIPYNITGPILEKL 116 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P P ++S+TLL QKEV ER+ A ++ Y LSV + + D+ F Sbjct: 117 LGSIAHPFTPPYQSITLLVQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPWRAF 176 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN----LL 250 P P+V S VI +P + P + + F RRK LR +LK + +L Sbjct: 177 SPPPRVDSAVIQLLPRVLPNNVSNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 Q I RAE+LS+ + + L Sbjct: 237 TQLEINPLARAEDLSLSQWIDLAEKL 262 >gi|326319524|ref|YP_004237196.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376360|gb|ADX48629.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 253 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 128/262 (48%), Gaps = 12/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ R + V+E Sbjct: 2 KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+ L+ +L++I+ D LKVDF + IRI+ NLPYNI T +LF Sbjct: 61 LDRDLAQRLRGH-----GQLDVIESDVLKVDFTAVAANLGTPRIRIVGNLPYNISTPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + QKEV +R+ AQ + YGRLSV+ WR + + P F Sbjct: 116 HLLE---HVDVVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPESF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S V+ +PH P P L+++ Q AF +RRK LR +L R Sbjct: 173 DPPPRVDSAVVRMVPHATPAPVAPRLLEELVQVAFSQRRKLLRHTLGRWLEARQFTGT-F 231 Query: 256 ETNLRAENLSIEDFCRITNILT 277 +T RAE + + D+ + Sbjct: 232 DTQRRAEEVPVADYVALAQACA 253 >gi|154494071|ref|ZP_02033391.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC 43184] gi|154086331|gb|EDN85376.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC 43184] Length = 290 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + V+EIG G G LTQ LL G + V+E Sbjct: 33 VKPKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVEL 91 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L+ + I+ +D L++D K F +I N PYNI +++ F + Sbjct: 92 DMESVDYLEQNFPVLEGK--ILAEDFLRLDLGKLF--PDQFCVIGNYPYNISSQIFFKVL 147 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + QKEV ER+ A S YG LSVL + +F +S +VF P Sbjct: 148 DYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSENVFDPP 204 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C E L K + + +F +RRKTLR S+K L G++ + Sbjct: 205 PKVKSAVIRMVRNDRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYSLPIF 264 Query: 258 NLRAENLSIEDFCRIT 273 N R E LS+E F +T Sbjct: 265 NKRPEQLSVEQFVELT 280 >gi|331694705|ref|YP_004330944.1| ribosomal RNA small subunit methyltransferase A [Pseudonocardia dioxanivorans CB1190] gi|326949394|gb|AEA23091.1| Ribosomal RNA small subunit methyltransferase A [Pseudonocardia dioxanivorans CB1190] Length = 284 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 123/276 (44%), Gaps = 14/276 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF+ D N +++I +++ V+E+G G G+LT LL Sbjct: 9 PAEVRGLAERLGIRPTKKLGQNFVHDPNTVRRIVKAAELGSDDVVVEVGPGLGSLTLALL 68 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A V +E D L + + +RL + DA++V + P I+ Sbjct: 69 PAVA-AVHAVEIDPVLAAQLPATVAEFAPGLADRLTVTTADAVRVRAAELAG-PVPTAIV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+G +L + ++ P ++ Q EV +R+ A S YG S W Sbjct: 127 ANLPYNVGVPVLLHLLAE---LPGIRRGLVMVQAEVADRLAAPPGSKTYGVPSAKLAWFA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 A + VF+P P V S ++ F P + + AF +RRK LR +L Sbjct: 184 DARRAGPVPRAVFWPVPNVDSGLLAFTCRPAPSDVPRADVFAVVDAAFAQRRKALRSALA 243 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E L AGI+ RAE L I DF RI Sbjct: 244 GWAGSPPAAEQALTTAGIDPLTRAERLGITDFARIA 279 >gi|78189160|ref|YP_379498.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3] gi|119365013|sp|Q3ARC0|RSMA_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78171359|gb|ABB28455.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3] Length = 263 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 137/267 (51%), Gaps = 10/267 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H ++ KK +GQNFL D NI +K SG+ V+EIG G G LT+ L+ + Sbjct: 7 KHTQVAAKKKLGQNFLTDRNITRKTVLLSGAKPDDQVVEIGPGFGALTRELVEEC-HNLT 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIEKD +++ ++P ++++I+ D L ++F P++I+ N+PY+I + +L Sbjct: 66 VIEKDPTLATFIRN---EYP-QIKVIEGDVLTINFSAMAQAGKPLQILGNIPYSITSPIL 121 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ + + S TL+ Q EV R+ A+ + YG L+V K +F +S V Sbjct: 122 FHLLEHRRA---FRSATLMMQHEVALRLAAKPATKEYGILAVQMQAFCKVEYLFKVSRKV 178 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P PKV S VI PH + ++ + AF +RRKTL +LK L+ Sbjct: 179 FKPQPKVESAVIKLTPHATDPALDADGFRRFVRIAFHQRRKTLLNNLKESYNLELVDSNK 238 Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281 + LRAE LSIE+ + +++ + Sbjct: 239 L--QLRAEALSIEELLELFSLIKTKSE 263 >gi|288941310|ref|YP_003443550.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180] gi|288896682|gb|ADC62518.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180] Length = 263 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 92/259 (35%), Positives = 130/259 (50%), Gaps = 7/259 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D ++ +I + + G ++EIG G G +TQ LLT A + VIE Sbjct: 3 HRARKRFGQNFLHDPLVIDRIHAAIDARPGERLVEIGPGQGAITQGLLTR-AGALDVIEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ L I DAL D + +R++ NLPYNI T LLF+++ Sbjct: 62 DRDLIEPLRQRLGGL-GELRIHNADALDFDLRTLADSEGTLRLVGNLPYNISTPLLFHFL 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + L+ QKEV ERI A+ YGRLSV+ R A +F I P F P+ Sbjct: 121 DQ---LDALQDMHLMLQKEVVERIAAEPGDKTYGRLSVMIQSRCAAASLFRIGPGAFKPA 177 Query: 199 PKVTSTVIHFIPHLNPI-PCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S + P P L +I AFG+RRKTLR SL + +++ AGI+ Sbjct: 178 PKVESAFLRLRPLRPLPHPIDDPRLHGRIVAAAFGQRRKTLRNSLSGVVDLDIIEAAGID 237 Query: 257 TNLRAENLSIEDFCRITNI 275 RAE L + + R+ N+ Sbjct: 238 PKRRAEELDVASYTRLANL 256 >gi|237756245|ref|ZP_04584806.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691603|gb|EEP60650.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 258 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I PKK++GQ+FL+ N+++KI + ++EIG G G LT+ +L + + +E Sbjct: 3 RIKPKKHLGQHFLISKNVIEKIVDEIDISQEDIIVEIGPGTGALTEEILLRNPKILYAVE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D +P+L++ S++ N ++I+ D V+ + + I+++ NLPYN+ + ++ Sbjct: 63 IDTTVYPVLEEKFSKYSN-FKLIKSDFFDVNLYELISDKEKIKLVGNLPYNVSSLMI--- 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I E + QKEV E++ A+ + Y LSV + + F P Sbjct: 119 IDCGFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDVKYIMSVPARFFNP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS V+ P N + ++ K F RRK + K E +L++AG+ Sbjct: 179 PPKVTSAVVKLTPKQNIVINNVKKYKNFVSHLFQNRRKMI----KSKIEEGMLNKAGVSP 234 Query: 258 NLRAENLSIEDFCRITNILTDN 279 NLRAE LS+EDF RI ++ ++ Sbjct: 235 NLRAEELSVEDFIRIFEVVEND 256 >gi|295675488|ref|YP_003604012.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002] gi|295435331|gb|ADG14501.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002] Length = 280 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 13/265 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71 H + +K GQNFL+D+ ++ I + G ++EIG G G LT+ L+ A Sbjct: 9 RHQGHLARKRFGQNFLVDMGVIDSIVDVIRPKRGERMVEIGPGLGALTEPLIERLATPES 68 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129 + +E D+ LK + LE+ DAL+ DF +RI+ NLPYNI Sbjct: 69 PLHAVELDRDLIGRLKTKFGEL---LELHSGDALEFDFGSLAAPGDKASLRIVGNLPYNI 125 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ T+ + Q EV ER+ A+ + + RLSV+ +R D Sbjct: 126 SSPLLFHL---ATFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 182 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L ++ AF +RRK LR +L L Sbjct: 183 VPPESFQPPPKVDSAIVRMIPYERHELPMVDENVLGEVVTAAFSQRRKMLRNTLAALRDT 242 Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272 G + RAE++ + ++ + Sbjct: 243 VDFDALGFDLQRRAEDVPVAEYVSV 267 >gi|303234855|ref|ZP_07321480.1| dimethyladenosine transferase [Finegoldia magna BVS033A4] gi|302493973|gb|EFL53754.1| dimethyladenosine transferase [Finegoldia magna BVS033A4] Length = 283 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%) Query: 3 MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M+ K H +K IL + K +GQNFL+D N+++ I + S + VIEIG G G Sbjct: 1 MSYKLHQPSYIKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 LT+ L+ + + IE D + +LK N +II +D LKVD + + Sbjct: 61 TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKF 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + + ES+T++ QKEV R+ A S Y LS+ Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMVQKEVANRMVADVGSKDYASLSLFVK 175 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + A ++ + VF P PKV S V++ E L+++ + F KRRKT+ Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILN 235 Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 S + +L + G++ NLRAENLS+ED+ I L+ Sbjct: 236 SFTSGFVNVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280 >gi|225023033|ref|ZP_03712225.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii ATCC 33806] gi|224944256|gb|EEG25465.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii ATCC 33806] Length = 302 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 15/278 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQM 64 ++T+ S I P K +GQNFL D N ++ I ++ D V+E+G G G+LT Sbjct: 22 PADIRTLASELDITPTKKLGQNFLHDPNTVRMIITTAQFTDVTNRHVLEVGPGLGSLTLG 81 Query: 65 LLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 L+T KV IE D + L + + H ++L + DAL V + + P Sbjct: 82 LVTAC-EKVTAIEIDPRLAARLPRTIAEFAPDHADQLTVSNRDALTVSPQDIDMSTPPTA 140 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ +L + ++ P + ++ Q EV +R+ A+ + YG SV + Sbjct: 141 LVANLPYNVSVPILLHLLAE---FPSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAF 197 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+PK+ S ++ +++ + AF +RRKTLR + Sbjct: 198 YGQVRRAGTIGKNVFWPAPKIDSGLVSIDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAA 257 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L + G E L +A I+ LR E L I DF R+ Sbjct: 258 LSGVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLA 295 >gi|308376581|ref|ZP_07439351.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu008] gi|308377580|ref|ZP_07479724.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu009] gi|308350599|gb|EFP39450.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu008] gi|308355232|gb|EFP44083.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu009] Length = 320 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 19 RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L+ ++H +RL ++ D L + E ++P ++ Sbjct: 79 DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + + P +T++ Q EV ER+ A+ S YG SV + Sbjct: 136 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + ++ ++ + AF +RRKT R Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 252 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + + G N L A I+ R E LSI+DF R+ Sbjct: 253 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 291 >gi|317153209|ref|YP_004121257.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2] gi|316943460|gb|ADU62511.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2] Length = 261 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 84/266 (31%), Positives = 128/266 (48%), Gaps = 12/266 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y KK +GQNFL D NI ++I ++ T+IEIG G G LT + + Sbjct: 4 EAYHHKAKKSLGQNFLTDQNICRRIVDAIAPGPTDTIIEIGPGQGALTGFIAQAHPARFS 63 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 VIE D L+ +P+ +E+I+ DAL+ +E N +I+ NLPYN+G++L+ Sbjct: 64 VIELDDGLADRLE---GAYPD-IEVIRADALRFPWESL-NAGERCKIVGNLPYNVGSKLI 118 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 ++ +S + + Q EV R+TA+ YG L+ +F + P V Sbjct: 119 WDIVSRVQ---TLDRAVFMVQHEVALRLTAEPGCKAYGGLTAWVRNFADTRYLFKVPPTV 175 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLL 250 F P PKV S V+ F+P P ++L ++ + F KRRK L LK L EN Sbjct: 176 FRPQPKVDSAVVAFVPRPVGEWPRSPQALDRLIKMLFQKRRKQLSNILKPLWSQEIENWF 235 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 GI R E LS + F ++ ++ Sbjct: 236 ASQGISPMARPETLSPQQFLELSALI 261 >gi|85859079|ref|YP_461281.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB] gi|119365852|sp|Q2LSQ6|RSMA_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85722170|gb|ABC77113.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB] Length = 280 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 17/280 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ IL ++ I P K +GQ FL D +++KKI E + + T++EIG+G G +T ++ Sbjct: 4 VRQILRNHDIKPVKRLGQCFLADFSVMKKIVELAEIKEDETIVEIGSGLGLMTSLMAERA 63 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPY 127 A V +E D + +LK+ ++ N + +I D LK DF + I+II N+PY Sbjct: 64 A-WVHAVEIDGKLVSVLKERLKEYHN-VTVIHGDILKYDFLTALGENSVKKIKIIGNIPY 121 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + +LF+ + + L+ QKEV +R+ A + YG +VL G + + Sbjct: 122 SISSPILFHILDHRKQ---ISTAVLMMQKEVADRLCAVPGTKAYGIPTVLFGLYARISRE 178 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 ++P F+P P+VTSTV+ + P+ ++ + AF +RRKTL ++K Sbjct: 179 LTVAPGCFYPKPEVTSTVVKMLIPEEPLYWVENDALFFRLVKAAFAQRRKTLLNNMKNAH 238 Query: 246 --------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ENLL G +RAE LSI+ F + N L+ Sbjct: 239 WKDCDAGRIENLLRDMGAGEKIRAEELSIQQFAALCNSLS 278 >gi|261367577|ref|ZP_05980460.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176] gi|282570364|gb|EFB75899.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176] Length = 287 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 18/292 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +++ + + Y K GQNF+++ I +IAE++G G V+EIG G G Sbjct: 1 MPNLTDLSTIRDLCARYDFALSKGFGQNFIINPGICPRIAEAAGIGPGWGVLEIGPGIGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---S 117 LT+ L A KV+ +E D++ P+L + + + N +++ D LKVD + Sbjct: 61 LTEQLCKR-ADKVVSVEVDKRLPPLLAETMAGYDN-FKLVLQDVLKVDLKALLEEEFGTK 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + +L + +++T++ Q+E +R+ A + G +S Sbjct: 119 PVAVCANLPYYITSPILMRLLEEKLP---IQNITVMVQREAAQRLCAAPGTREAGAISYA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP----IPCCLESLKKITQEAFGKR 233 + + ++F + P F+P+P VTS VI P ++ + + AF +R Sbjct: 176 VAYYAQPKLLFTVQPGSFYPAPSVTSAVIRLDVRQQPPVDLPDGREKAYFALIRAAFSQR 235 Query: 234 RKTLRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 RKT + L + L AG+E R E L++ + + L ++ Sbjct: 236 RKTAANAIANGLKLPKAQVLEALRTAGLEERARPEQLTLRAYAALLTALHED 287 >gi|253799960|ref|YP_003032961.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 1435] gi|253321463|gb|ACT26066.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 1435] Length = 323 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 22 RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 81 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L+ ++H +RL ++ D L + E ++P ++ Sbjct: 82 DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 138 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + + P +T++ Q EV ER+ A+ S YG SV + Sbjct: 139 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 195 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + ++ ++ + AF +RRKT R Sbjct: 196 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 255 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + + G N L A I+ R E LSI+DF R+ Sbjct: 256 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 294 >gi|326333241|ref|ZP_08199488.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1] gi|325948885|gb|EGD40978.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1] Length = 299 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 137/284 (48%), Gaps = 17/284 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++++ S + P K GQNF++D N +++I SG V+E+G G G+LT +L Sbjct: 12 PAEVRSLASELDLRPTKQRGQNFVIDANTVRRIVRESGVDASDVVVEVGPGLGSLTLAIL 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 GAR V IE D+ L ++ + +I+ DAL+VD P ++ Sbjct: 72 ETGAR-VTAIEIDEVLAERLPRTIEEYAPDQADAFSLIRADALRVDSVP---GPPPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + +S P ++ Q EV +R+ A+ S YG SV W Sbjct: 128 ANLPYNVSVPVLLHLMS---LLPSLRHGLVMVQAEVADRLAAKPGSKVYGVPSVKAAWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+P V S ++++ P E + + AF +RRK LR L Sbjct: 185 DVRRAGAIGRNVFWPAPNVDSGLVYWSHREPPSTEVSREEVFAVVDAAFAQRRKALRGVL 244 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 K L G E L AGI+ R E+L+I DF RIT L ++ Sbjct: 245 KPLAGSADAAEKALVAAGIDPLARGESLTIADFVRITESLHADR 288 >gi|325853921|ref|ZP_08171437.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A] gi|325484258|gb|EGC87188.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A] Length = 274 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I +IA++ + I V+EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + + R II +D L++D + F+ + N PY+I +++ F + Sbjct: 63 DAESVAYLYEKFPRL--RENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ A S YG LSVL +F + +VF P Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + + C K++ + F +RRK LR SL++L + ++ Sbjct: 177 PKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPTDGFYEQ 236 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283 I R E LSI +TN++ + ++A Sbjct: 237 DI-MTKRPEQLSIPQLVGLTNMVAEQLELA 265 >gi|282878182|ref|ZP_06286978.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310] gi|281299600|gb|EFA91973.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310] Length = 271 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 11/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I K+IA++ + I ++EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIAKRIADTVDACPSIPILEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L++ + + II D L++D + F+ + N PY+I +++ F + Sbjct: 63 DRESVAYLRENFPKLRDN--IIGQDFLRMDLHQVFD-GQQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV +RI ++ + YG LSVL +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQREVAQRIASEPGNKAYGILSVLIQAWYHVEYLFTVDEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AG 254 PKV S VI + + + C K++ + F +RRK LR SL++L AG Sbjct: 177 PKVKSAVIRMTRNEVHDLGCDEMFFKRVVKTVFNQRRKMLRVSLRQLFPGEGASAEFYAG 236 Query: 255 IETNLRAENLSIEDFCRITNILT 277 R E LS+ F +TN + Sbjct: 237 ELMTKRPEQLSVAQFVALTNQVE 259 >gi|33594223|ref|NP_881867.1| dimethyladenosine transferase [Bordetella pertussis Tohama I] gi|62900576|sp|Q7VU11|RSMA_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33564298|emb|CAE43596.1| dimethyladenosine transferase [Bordetella pertussis Tohama I] gi|332383637|gb|AEE68484.1| dimethyladenosine transferase [Bordetella pertussis CS] Length = 265 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 120/254 (47%), Gaps = 11/254 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ+FL D ++++ I + G V+EIG G LT+ LL + +E Sbjct: 4 HQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDR-IDHLTAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ RL +++ DAL VDF +F +R++ NLPYNI + LLF+ + Sbjct: 63 DRDLAARLRRQYPA--ERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLM 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 A + Q+EV +R+ A+ S Y RLSV+ R + +FD++P F P Sbjct: 118 GAAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPP 174 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S V+ P P + + + AF +RRK LR+ L + GI Sbjct: 175 PRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLDDWAALTPWDELGIA 234 Query: 257 TNLRAENLSIEDFC 270 RAE + + F Sbjct: 235 PTARAEEVGVAQFI 248 >gi|53712071|ref|YP_098063.1| dimethyladenosine transferase [Bacteroides fragilis YCH46] gi|60680265|ref|YP_210409.1| dimethyladenosine transferase [Bacteroides fragilis NCTC 9343] gi|253563890|ref|ZP_04841347.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5] gi|62900503|sp|Q64Y97|RSMA_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|81316665|sp|Q5LHC9|RSMA_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|52214936|dbj|BAD47529.1| dimethyladenosine transferase [Bacteroides fragilis YCH46] gi|60491699|emb|CAH06452.1| putative dimethyladenosine transferase [Bacteroides fragilis NCTC 9343] gi|251947666|gb|EES87948.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5] Length = 272 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F ++ VF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K+I + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFIHLTNQVE 256 >gi|325286669|ref|YP_004262459.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga lytica DSM 7489] gi|324322123|gb|ADY29588.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga lytica DSM 7489] Length = 286 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 14/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D I ++IAE+ VIEIG G G LT+ +L +I ++ Sbjct: 22 VKAKKHLGQHFLTDEAIAQQIAETLTHNGYTNVIEIGPGTGVLTKYILKHD-LNLIAMDL 80 Query: 79 DQQFFPIL-KDISSQHP------NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D + L ++ +HP ++++ D LK D F I N PYNI T Sbjct: 81 DTESIAYLNQNFLLEHPELLNRKGTFKVVEADFLKQDLTTIFGDEQ-FAISGNFPYNIST 139 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F + P + + FQKEV ERI +++ S YG LSVLT A +F + Sbjct: 140 QIVFKTLEHKQQIPEFTGM---FQKEVAERICSKEGSKAYGILSVLTQAYYHAEYLFTVP 196 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P VF P PKV S V+ N I + L ++ + F +RRKT+R SLK + L Sbjct: 197 PTVFNPPPKVDSGVLRLTRKENLDIGVDEKLLYRVVKAVFNQRRKTIRNSLKTFELSDNL 256 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + I R E L++EDF +T + ++ Sbjct: 257 KEDPI-FGKRPEQLAVEDFVALTKKIAND 284 >gi|54113937|gb|AAV29602.1| NT02FT1085 [synthetic construct] Length = 262 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 94/266 (35%), Positives = 132/266 (49%), Gaps = 9/266 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 Y KK +GQNFL D NI++KI + + V+EIG G G LT+ LL + V V Sbjct: 2 QYMTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134 +E D L ++ I D LK D N S I++I NLPYNI + +L Sbjct: 61 VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I + QKEV ERI + NS GRLSV+ + +M+ I P V Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 F+P PKV S ++ P + ++I +++F +RRKTL +LK + E + Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 ++TNLRAENLS+ DF + N L Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLR 262 >gi|221200091|ref|ZP_03573134.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M] gi|221206756|ref|ZP_03579768.1| dimethyladenosine transferase [Burkholderia multivorans CGD2] gi|221173411|gb|EEE05846.1| dimethyladenosine transferase [Burkholderia multivorans CGD2] gi|221180330|gb|EEE12734.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M] Length = 275 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 13/263 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71 H +K GQNFL+D ++ I + G ++EIG G G LT+ L+ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPET 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ LK LE+ DAL DF +RI+ NLPYNI Sbjct: 66 PLHAVELDRDLIARLKQRFGAL---LELHAGDALAFDFRSLAAPGDAPSLRIVGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ + T+ + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IP+ L +I AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGEIVTAAFSQRRKMLRNTLGDYRET 239 Query: 248 NLLHQAGIETNLRAENLSIEDFC 270 G + RAE++S+ ++ Sbjct: 240 IDFDALGFDLARRAEDVSVAEYV 262 >gi|34539998|ref|NP_904477.1| dimethyladenosine transferase [Porphyromonas gingivalis W83] gi|188994112|ref|YP_001928364.1| dimethyladenosine transferase [Porphyromonas gingivalis ATCC 33277] gi|62900561|sp|Q7MXN7|RSMA_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732608|sp|B2RHC2|RSMA_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|34396309|gb|AAQ65376.1| dimethyladenosine transferase [Porphyromonas gingivalis W83] gi|188593792|dbj|BAG32767.1| putative dimethyladenosine transferase [Porphyromonas gingivalis ATCC 33277] Length = 258 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 19/267 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ KK +GQ+FL DL+I ++IA++ + V+EIG G G LTQ LL G V VIE Sbjct: 3 RVKAKKALGQHFLRDLSIAERIADTLSEHKALPVLEIGPGMGVLTQFLLRKG-HDVRVIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L++ + +R II+ D L + F +I N PYNI +++ F Sbjct: 62 IDGESVSYLREEFPELSDR--IIEGDFLHYPLSELFPGGRQYCLIGNYPYNISSQIFFRL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + + Q+EV R+ + YG LSVL +F + VF P Sbjct: 120 LDVREQIP---CCSGMLQREVAMRLASPPGKKDYGILSVLLQLWYNIEYLFTVDASVFDP 176 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + +PC ++LK + + AFG+RRKTLR SL+ + AG + Sbjct: 177 PPKVQSGVIRLTRNDRKELPCSEKALKTVVKTAFGQRRKTLRNSLRGILP------AGFD 230 Query: 257 ------TNLRAENLSIEDFCRITNILT 277 + R E LS +DF +T +L Sbjct: 231 RFDEPVFSKRPEQLSPDDFIALTLLLQ 257 >gi|289749539|ref|ZP_06508917.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T92] gi|289690126|gb|EFD57555.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T92] Length = 318 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 16 RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L+ ++H +RL ++ D L + E ++P ++ Sbjct: 76 DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 132 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + + P +T++ Q EV ER+ A+ S YG SV + Sbjct: 133 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 189 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + ++ ++ + AF +RRKT R Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + + G N L A I+ R E LSI+DF R+ Sbjct: 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 >gi|265765406|ref|ZP_06093681.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16] gi|263254790|gb|EEZ26224.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16] gi|301161792|emb|CBW21332.1| putative dimethyladenosine transferase [Bacteroides fragilis 638R] Length = 272 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL + + IA++ + + ++E+G G G LTQ L+ R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ + II+DD LK++ ++ F+ P + N PYNI +++ F + Sbjct: 63 DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL + +F ++ VF P Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C + K+I + F +RRKTLR S+K + G++ Sbjct: 177 PKVKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDTLF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 N R E LS+++F +TN + Sbjct: 237 NKRPEQLSVQEFIHLTNQVE 256 >gi|84497817|ref|ZP_00996614.1| dimethyladenosine transferase [Janibacter sp. HTCC2649] gi|84381317|gb|EAP97200.1| dimethyladenosine transferase [Janibacter sp. HTCC2649] Length = 295 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 81/283 (28%), Positives = 129/283 (45%), Gaps = 17/283 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + I P K GQNF++D N +++I +G V+EIG G G+LT LL Sbjct: 9 AAQIRELAARFGIRPTKSWGQNFVIDANTVQRIVRVAGVGPDDVVVEIGPGLGSLTLALL 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 + +V D L + RL ++ DAL++ + +P ++ Sbjct: 69 PVVRHVTVVE-VDPILAGALPETVETVAPGVVERLTVVHADALRI---EELPGDAPTALV 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYNI ++ N++ E + ++ Q EV ER+ A+ S YG SV W Sbjct: 125 ANLPYNISVPVVLNFLERFA---SLERILVMVQLEVAERLAAKPGSKIYGVPSVKAAWYA 181 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL 241 + T+ ++S VF+P P V S ++ + P E + AF +RRKTLR +L Sbjct: 182 EVTLAGNVSRSVFWPVPNVDSGLVKLVRREQPTTDASREQVFACIDAAFAQRRKTLRAAL 241 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G L AGI+ R E L + F I + N Sbjct: 242 ATWAGSPSAAEAALVAAGIDPRTRGEQLDVHQFAAIASAHRAN 284 >gi|319765025|ref|YP_004128962.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC] gi|330827220|ref|YP_004390523.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601] gi|317119586|gb|ADV02075.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC] gi|329312592|gb|AEB87007.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601] Length = 255 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 130/262 (49%), Gaps = 12/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ R + VIE Sbjct: 2 KHIPRKRFGQHFLSDPGIIDAIVRAIAPRPGQHMVEIGPGLAALTQPLVERLGR-LTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+ L+ +L++I+ D LKVDF + + IR++ NLPYNI T +LF Sbjct: 61 LDRDLAARLRQH-----GQLDVIESDVLKVDFTQVAQTLAAPKIRVVGNLPYNISTPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + ++ E + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLMAHVQ---IIEDQHFMLQKEVIDRMVAAPATAAYGRLSVMLQWRYAMEDVLFVPPGSF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S V+ +PH P L ++ Q AF +RRK LR +L R E + G Sbjct: 173 DPPPRVDSAVVRMLPHARPAAVDEALLSELVQVAFSQRRKLLRHTLGRWL-EGHGYAGGF 231 Query: 256 ETNLRAENLSIEDFCRITNILT 277 +T RAE + + + + L Sbjct: 232 DTQRRAEEVPVAHYVALAQELA 253 >gi|312134313|ref|YP_004001651.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL] gi|311774364|gb|ADQ03851.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL] Length = 282 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 147/284 (51%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M L L Y + P K +GQNFL+D N+++KI +G VIEIGAGPG Sbjct: 1 MDFAITKTELLNFLKKYGLSPNKKLGQNFLVDENVVRKII-LFSQAEGKEVIEIGAGPGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L + ARKV+ +E D++ +LK++ PN ++I+ +D LK++ + N + Sbjct: 60 LTVYLAEI-ARKVVAVEIDKKILNVLKEVCQDIPN-IQIVNNDFLKLNVKDLTNTGR-VY 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ NLPY I +++LF + E T++ QKEV +R+ A+ + YG L+V + Sbjct: 117 IVGNLPYYITSQILFKLFEERE---YIEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMKF 173 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + F +S +VF+P P+V S V+ + KI F RRKT+ + Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKDSLPEIEHRDFFKIVHACFSTRRKTILNA 233 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + +++ A ++ NLRAE+LS++D+ R+ + Sbjct: 234 LSNHFDIGKDKLKRIINMAEVDENLRAEDLSLDDYIRLYKCFEE 277 >gi|29840068|ref|NP_829174.1| dimethyladenosine transferase [Chlamydophila caviae GPIC] gi|33301245|sp|Q823V2|RSMA_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29834416|gb|AAP05052.1| dimethyladenosine transferase [Chlamydophila caviae GPIC] Length = 278 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 14/285 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ ++ + + PKK + QNFL+D NIL+KI S G V+EIG G G Sbjct: 1 MSRSSPDQLTRFLAQVQG-RPKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT++L+ GA V+ +EKD F LK + P LEI + + R Sbjct: 60 LTEVLVNQGAH-VVALEKDPMFEETLKQL----PIDLEITDACKYPLSQLEEKGWQGKGR 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T LL P W+++T++ Q EV RITAQ YG L++ + Sbjct: 115 VVANLPYHITTPLLTKLFLE--VPNQWKTVTVMMQDEVARRITAQPGGKEYGSLTIFLQF 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLR 238 F +SP FFP P+V+S V+H P+ L + +T+ AFG+RRK L Sbjct: 173 FADVRYAFKVSPGCFFPKPQVSSAVVHMTVKETFPLETSLHQKFFSLTRAAFGQRRKLLA 232 Query: 239 QSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILTDN 279 +LK L + L L+Q R E LS+ ++ ++ ++L+ N Sbjct: 233 NALKDLYPKELVFSALNQLNFSEKTRPETLSLNEYLQLFHLLSSN 277 >gi|319778500|ref|YP_004129413.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9] gi|317108524|gb|ADU91270.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9] Length = 259 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 132/263 (50%), Gaps = 13/263 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +K GQ+FL D ++ +I V+EIG G LT +LL + VIE D Sbjct: 4 QARKRFGQHFLTDQSVPDEIVRKLSLNASDCVVEIGPGLSALTNVLL-SKLNHLYVIEID 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L+ + ++L +I+ D L VDF F +P+RI+ NLPYNI + +LF+ + Sbjct: 63 RDLAAKLRKTHDE--SKLTVIESDVLDVDFSIF---PTPLRIVGNLPYNISSPILFHLLK 117 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + QKEV +R+ A+ S YGRLSV+ R K + D+ P F P P Sbjct: 118 YAD---SVVDQHFMLQKEVVDRMVAKPGSSEYGRLSVMLQERYKMHSILDVPPEAFTPPP 174 Query: 200 KVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +P P P + K+ Q+AF +RRK LR LK + I Sbjct: 175 KVDSAVVKMLPLASDRPKPKSYDVFSKVVQQAFSQRRKMLRGVLKSYDID--WEFLNINE 232 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 LRAE+L ++D+ ++++ + + + Sbjct: 233 ALRAEDLGVDDYIKLSDFILEKR 255 >gi|114799371|ref|YP_760849.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444] gi|114739545|gb|ABI77670.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444] Length = 285 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 105/269 (39%), Positives = 148/269 (55%), Gaps = 17/269 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 +K +GQ+FL D +ILK+ A ++G L G TVIE+G GPG LT+ +L +I +E D Sbjct: 22 ARKALGQHFLFDPSILKRAANAAGPLKGKTVIEVGPGPGGLTRAILNEEPALLIAVETDP 81 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNW 137 +F L RL++I DA KV +EK + P+ IIANLPYN+GT LL +W Sbjct: 82 RFSEALMSWPEAKNGRLQVIARDARKVHWEKVLQEAGAATPVMIIANLPYNVGTPLLIDW 141 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + A W + L+FQ+EV ERI AQ ++ YGRL+V++ T+ + F + P F P Sbjct: 142 LKAGDWRGP---MALMFQREVAERICAQPDTDAYGRLAVISQAVTRPRIAFTLPPGAFRP 198 Query: 198 SPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK------RLGGEN 248 PKV S V+ F P P E L++I AFG+RRK LR +LK + E Sbjct: 199 PPKVDSAVVEFEPL--PPGERFEHLALLEQIAGAAFGQRRKMLRAALKPFAKKRGMKAEA 256 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI+ RAE L+ +F ++ L Sbjct: 257 WLEDCGIKPTARAETLTQAEFRKLATSLA 285 >gi|212278077|gb|ACJ23053.1| KsgA [Neisseria gonorrhoeae] Length = 248 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 84/263 (31%), Positives = 123/263 (46%), Gaps = 22/263 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIV-------------LVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 106 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 107 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 163 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 164 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 223 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 224 PQDRAEHIAPEKYVALSNYLADK 246 >gi|325270787|ref|ZP_08137378.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608] gi|324986903|gb|EGC18895.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608] Length = 290 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 13/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL+DL+I ++IA++ + I ++EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLVDLSIARRIADTVDACPDIPILEIGPGMGVLTQYLVG-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + I+ +D L++D + F+ + N PY+I +++ F + Sbjct: 63 DAESVAYLYEKFPTLHE--HILGEDFLRMDLSQVFD-GRQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ A S YG LSVL +F + +VF P Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAGPGSKAYGILSVLMQAWYDVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + + C + K++ + F +RRK LR SL++L + + Sbjct: 177 PKVKSAVIRMTRNGVTDLGCDGQLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADSFYAQ 236 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I R E LSI F +TN + + Sbjct: 237 DI-MTKRPEQLSIPQFVELTNKVDEQ 261 >gi|15608150|ref|NP_215526.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Rv] gi|15840438|ref|NP_335475.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551] gi|31792201|ref|NP_854694.1| dimethyladenosine transferase [Mycobacterium bovis AF2122/97] gi|121636939|ref|YP_977162.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660792|ref|YP_001282315.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra] gi|148822220|ref|YP_001286974.1| dimethyladenosine transferase [Mycobacterium tuberculosis F11] gi|167968132|ref|ZP_02550409.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra] gi|215402826|ref|ZP_03415007.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987] gi|215410613|ref|ZP_03419421.1| dimethyladenosine transferase [Mycobacterium tuberculosis 94_M4241A] gi|215429871|ref|ZP_03427790.1| dimethyladenosine transferase [Mycobacterium tuberculosis EAS054] gi|218752682|ref|ZP_03531478.1| dimethyladenosine transferase [Mycobacterium tuberculosis GM 1503] gi|219556877|ref|ZP_03535953.1| dimethyladenosine transferase [Mycobacterium tuberculosis T17] gi|224989411|ref|YP_002644098.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo 172] gi|254231305|ref|ZP_04924632.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C] gi|254363926|ref|ZP_04979972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str. Haarlem] gi|254549996|ref|ZP_05140443.1| dimethyladenosine transferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185921|ref|ZP_05763395.1| dimethyladenosine transferase [Mycobacterium tuberculosis CPHL_A] gi|260200039|ref|ZP_05767530.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46] gi|260204228|ref|ZP_05771719.1| dimethyladenosine transferase [Mycobacterium tuberculosis K85] gi|289442431|ref|ZP_06432175.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46] gi|289446592|ref|ZP_06436336.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CPHL_A] gi|289555207|ref|ZP_06444417.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 605] gi|289568987|ref|ZP_06449214.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17] gi|289573650|ref|ZP_06453877.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85] gi|289744746|ref|ZP_06504124.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987] gi|289753071|ref|ZP_06512449.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis EAS054] gi|289761146|ref|ZP_06520524.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM 1503] gi|294995200|ref|ZP_06800891.1| dimethyladenosine transferase [Mycobacterium tuberculosis 210] gi|297633537|ref|ZP_06951317.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN 4207] gi|297730522|ref|ZP_06959640.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN R506] gi|298524506|ref|ZP_07011915.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|306775146|ref|ZP_07413483.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu001] gi|306781939|ref|ZP_07420276.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu002] gi|306783706|ref|ZP_07422028.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu003] gi|306788061|ref|ZP_07426383.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu004] gi|306792394|ref|ZP_07430696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu005] gi|306796797|ref|ZP_07435099.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu006] gi|306806862|ref|ZP_07443530.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu007] gi|306971253|ref|ZP_07483914.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu010] gi|307078981|ref|ZP_07488151.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu011] gi|307083542|ref|ZP_07492655.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu012] gi|313657851|ref|ZP_07814731.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Mycobacterium tuberculosis KZN V2475] gi|54037708|sp|P66661|RSMA_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54041549|sp|P66660|RSMA_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221680|sp|A1KHE8|RSMA_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221681|sp|A5U153|RSMA_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807874|sp|C1AM01|RSMA_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2052147|emb|CAB08137.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Mycobacterium tuberculosis H37Rv] gi|13880609|gb|AAK45289.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551] gi|31617789|emb|CAD93898.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Mycobacterium bovis AF2122/97] gi|121492586|emb|CAL71054.1| Probable dimethyladenosine transferase ksgA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600364|gb|EAY59374.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C] gi|134149440|gb|EBA41485.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str. Haarlem] gi|148504944|gb|ABQ72753.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra] gi|148720747|gb|ABR05372.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis F11] gi|224772524|dbj|BAH25330.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289415350|gb|EFD12590.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46] gi|289419550|gb|EFD16751.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CPHL_A] gi|289439839|gb|EFD22332.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 605] gi|289538081|gb|EFD42659.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85] gi|289542741|gb|EFD46389.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17] gi|289685274|gb|EFD52762.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987] gi|289693658|gb|EFD61087.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis EAS054] gi|289708652|gb|EFD72668.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM 1503] gi|298494300|gb|EFI29594.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|308216296|gb|EFO75695.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu001] gi|308325330|gb|EFP14181.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu002] gi|308331489|gb|EFP20340.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu003] gi|308335295|gb|EFP24146.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu004] gi|308339103|gb|EFP27954.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu005] gi|308342775|gb|EFP31626.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu006] gi|308346684|gb|EFP35535.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu007] gi|308359187|gb|EFP48038.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu010] gi|308363121|gb|EFP51972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu011] gi|308366753|gb|EFP55604.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu012] gi|323720511|gb|EGB29593.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CDC1551A] gi|326904763|gb|EGE51696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis W-148] gi|328459703|gb|AEB05126.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 4207] Length = 317 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 16 RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L+ ++H +RL ++ D L + E ++P ++ Sbjct: 76 DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 132 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + + P +T++ Q EV ER+ A+ S YG SV + Sbjct: 133 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 189 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + ++ ++ + AF +RRKT R Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + + G N L A I+ R E LSI+DF R+ Sbjct: 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 >gi|221211273|ref|ZP_03584252.1| dimethyladenosine transferase [Burkholderia multivorans CGD1] gi|221168634|gb|EEE01102.1| dimethyladenosine transferase [Burkholderia multivorans CGD1] Length = 305 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 122/276 (44%), Gaps = 20/276 (7%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 +M+N H +K GQNFL+D ++ I + G ++EIG G G L Sbjct: 30 SMSNSRQ-------HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGAL 82 Query: 62 TQMLLTLGA---RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-- 116 T+ L+ A + +E D+ LK LE+ DAL DF Sbjct: 83 TEPLIARLATPETPLHAVELDRDLIARLKQRFGAL---LELHAGDALAFDFRSLAAPGDA 139 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +RI+ NLPYNI + LLF+ + T+ + Q EV ER+ A+ + + RLSV Sbjct: 140 PSLRIVGNLPYNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSV 196 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRR 234 + +R + D+ P F P PKV S ++ IP+ L +I AF +RR Sbjct: 197 MLQYRYVMDKLIDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGEIVTAAFSQRR 256 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFC 270 K LR +L G + RAE++S+ ++ Sbjct: 257 KMLRNTLGDYRETIDFDALGFDLARRAEDVSVAEYV 292 >gi|83719203|ref|YP_441135.1| dimethyladenosine transferase [Burkholderia thailandensis E264] gi|167579886|ref|ZP_02372760.1| dimethyladenosine transferase [Burkholderia thailandensis TXDOH] gi|167617960|ref|ZP_02386591.1| dimethyladenosine transferase [Burkholderia thailandensis Bt4] gi|257140203|ref|ZP_05588465.1| dimethyladenosine transferase [Burkholderia thailandensis E264] gi|119365011|sp|Q2T114|RSMA_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83653028|gb|ABC37091.1| dimethyladenosine transferase [Burkholderia thailandensis E264] Length = 275 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 120/262 (45%), Gaps = 13/262 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNI 129 + +E D+ LK + LE+ + DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLKQRFGEL---LELHEGDALAFDFGSLALPGEKPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ +S + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDF 269 G + RAE++ ++++ Sbjct: 240 VDFDALGFDLARRAEDVGVDEY 261 >gi|301310976|ref|ZP_07216905.1| dimethyladenosine transferase [Bacteroides sp. 20_3] gi|300831039|gb|EFK61680.1| dimethyladenosine transferase [Bacteroides sp. 20_3] Length = 266 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 9/256 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + + V+EIG G G LTQ LL G + V+E Sbjct: 4 VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L R II +D LK+D K F +I N PYNI +++ F + Sbjct: 63 DMESVDYLNLNFPDLKGR--IIAEDFLKLDLSKLF--PGQFCVIGNYPYNISSQIFFKVL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + QKEV ER+ A S YG LSVL +F +S VF P Sbjct: 119 DYKDQIP---CCSGMLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVSEKVFDPP 175 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + C + K + + +F +RRKTLR S+K L G++ A Sbjct: 176 PKVKSAVLKITRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYALPIF 235 Query: 258 NLRAENLSIEDFCRIT 273 + R E LS+E F +T Sbjct: 236 DKRPEQLSVEQFVELT 251 >gi|288803714|ref|ZP_06409143.1| dimethyladenosine transferase [Prevotella melaninogenica D18] gi|288333803|gb|EFC72249.1| dimethyladenosine transferase [Prevotella melaninogenica D18] Length = 267 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 132/266 (49%), Gaps = 13/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I ++IA++ + I V+EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + + R I+ D L++D + F+ + N PY+I +++ F + Sbjct: 63 DSESVAFLYEKFPKL--RENILGQDFLRMDLNEVFD-GRQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV +R+ A S YG LSVL +F + +VF P Sbjct: 120 EYKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + I C K++ + F +RRK LR SL+++ + ++ Sbjct: 177 PKVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQ 236 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I R E LSI F +TN++ + Sbjct: 237 DI-MTKRPEQLSIAQFVELTNMVEEQ 261 >gi|41407073|ref|NP_959909.1| dimethyladenosine transferase [Mycobacterium avium subsp. paratuberculosis K-10] gi|62900553|sp|Q741W2|RSMA_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|41395424|gb|AAS03292.1| KsgA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 318 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 19/286 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G LT LL Sbjct: 19 RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGPLTLALL 78 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L ++H + RL ++ D L + ++ P ++ Sbjct: 79 DRGAH-VTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDELAE--PPTAVV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + P + ++ AFG+RRKT R Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFELVDIAFGQRRKTCR 252 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + G + L A I+ R E LSI+DF R+ D Sbjct: 253 NAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298 >gi|325676279|ref|ZP_08155958.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707] gi|325552840|gb|EGD22523.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707] Length = 296 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 19/282 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I +G TV+E+G G G+LT LL Sbjct: 20 PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALL 79 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + +V+ +E D + L D + + +RL ++ DA++V + + P ++ Sbjct: 80 DV-VDRVVAVEIDPKLAARLPATVADRAPELADRLTVVGADAMRVIPDDV--PAEPTAVV 136 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P + ++ Q EV +R+ A S YG SV + Sbjct: 137 ANLPYNVAVPVLLHLFAE---FPSLRTALVMVQAEVADRLAATPGSKVYGVPSVKANFFG 193 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238 + VF+P P+V S ++ + P P + + AF +RRKTLR Sbjct: 194 TVKRAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLR 253 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 +L G E L AGIE + R E L F R+ N+ Sbjct: 254 AALAGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 295 >gi|297564142|ref|YP_003683115.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848591|gb|ADH70609.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 293 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 126/278 (45%), Gaps = 17/278 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++T+ + I P K +GQNF++D +++I +G + V+E+G G G+LT LL Sbjct: 18 PADVRTLAERFGIRPTKTLGQNFVIDHGTVRRIVRVAGVTEEDAVVEVGPGLGSLTLALL 77 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 R V +E D L + H +RL ++ DA++V P ++ Sbjct: 78 PH-VRHVTAVEIDPALAEALPGTVADHAPDLADRLTVVHGDAMRVTG---LPGPEPTALV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L P + ++ Q EV +R+TA YG S W Sbjct: 134 ANLPYNVSVPVLL---HLLELLPSLRRVLVMVQAEVADRVTASPGGRVYGVPSAKVAWYA 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 A + +VF+P+P V S ++ I P E + ++ AF +RRKTLR +L Sbjct: 191 GARRAGAVGRNVFWPAPNVDSGLVELIRRPPPATTASREEVFQVIDAAFAQRRKTLRAAL 250 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 G E L AG++ + R E+L + F I Sbjct: 251 AGWAGSPPAAETALRAAGVDPSARGESLDVTAFAAIAE 288 >gi|290968589|ref|ZP_06560127.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str. 28L] gi|290781242|gb|EFD93832.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str. 28L] Length = 294 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 131/275 (47%), Gaps = 13/275 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ I+ + + K +GQNFL+ + IAE++ G V+EIG G G LTQ L G Sbjct: 12 VRYIVRRFGLHMNKKLGQNFLIRHEAVAAIAEAAALTPGEQVLEIGPGIGTLTQALAETG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V +E D PIL + + N +++I D ++V P + ANLPY I Sbjct: 72 A-AVRAVEVDAGLLPILAKTLAHYDN-VQVIHGDIMRVSIPDIME-HKPFTVCANLPYYI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++ + L + QKEV +R+ A S YG LSV + T+A ++F+ Sbjct: 129 TTPIIMQLLEQRLP---IRRLVFMVQKEVAQRMVAAPGSKVYGALSVAVQYYTQAELLFE 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247 I P F P+P+VTS V+ P E K+ + AF +RRK R +L+ G Sbjct: 186 IPPQAFMPAPEVTSAVVALQVRTEPPVKVQEEARFFKVVKAAFAQRRKVFRNALQGAGIS 245 Query: 248 N-----LLHQAGIETNLRAENLSIEDFCRITNILT 277 +L +A I+ R E L +++F + T Sbjct: 246 KETVTRMLREAQIDGERRGETLDLQEFAAVAEAWT 280 >gi|302380914|ref|ZP_07269376.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3] gi|302311292|gb|EFK93311.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3] Length = 283 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%) Query: 3 MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M+ K H +K IL + K +GQNFL+D N+++ I + S + VIEIG G G Sbjct: 1 MSYKLHQPSYIKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 LT+ L+ + + IE D + +LK N +II +D LKV+ + + Sbjct: 61 TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVNLNELNHEDKKF 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + + ES+T++ QKEV R+ A S Y LS+ Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMVQKEVANRMVADVGSKDYASLSLFVK 175 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + A ++ + VF P PKV S V++ E L+++ + F KRRKT+ Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILN 235 Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 S + +L + G++ NLRAENLS+ED+ I L+ Sbjct: 236 SFTSGFVNVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280 >gi|328873034|gb|EGG21401.1| Dimethyladenosine transferase [Dictyostelium fasciculatum] Length = 470 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 106/291 (36%), Positives = 162/291 (55%), Gaps = 21/291 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ ++ Y + K+ + QNFLLDLNI KI +G TVIE+GAGPG LT+ LLT G Sbjct: 9 IQDLIRMYGLSAKQQLSQNFLLDLNITDKICREAGGFKDCTVIEVGAGPGGLTRSLLTAG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----------FNISSPI 119 A+KVI +E D++F P L+ + RL ++ D +KVD + + S + Sbjct: 69 AKKVIAVEMDRRFIPALRMLEEASEGRLSVVMGDMMKVDEGELLRHFQAEKMPWEEKSKV 128 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQKNSPHYGRL 174 +I+ NLP+N+GT L+ W+ + + L+FQKE+ ERI A +S +YGRL Sbjct: 129 KIVGNLPFNVGTHLMLKWVRQIKPREGLYAYGRVPMVLMFQKELAERIIAPVDSHNYGRL 188 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232 +V+ G + +++D+ VF P PKV ++VIH P + PI E L+ I + F Sbjct: 189 AVMVGQECHSKIIYDLPGKVFVPPPKVDASVIHIEPLVEPIGQVDSKEHLEFICRSLFNH 248 Query: 233 RRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRKT+ +LK + G E LL I+ + R ++L+ ++F ITN T D Sbjct: 249 RRKTISNALKPMGKGSEGLLG--DIDPSRRPQSLTFKEFADITNRYTAWPD 297 >gi|302871038|ref|YP_003839674.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis OB47] gi|302573897|gb|ADL41688.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis OB47] Length = 282 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 147/284 (51%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L +L Y++ P K +GQNFL+D N+++KI +G VIEIGAGPG Sbjct: 1 MNLAITKTELLNLLKKYELSPNKKLGQNFLIDENVVRKII-LFSQTEGKEVIEIGAGPGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L A+KV +E D++ +LK++ N ++I+ D L+++ + + I Sbjct: 60 LTIYLAKT-AQKVFAVEIDKKILNVLKEVCQNLSN-VQIVNSDFLELNVKNLTK-GNKIY 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPY + +++LF E T++ QKEV +R+ A+ + YG L+V + Sbjct: 117 VVGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAEPGTKEYGNLTVAMNF 173 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + F +S +VF+P P+V STV+ + + KI F RRKT+ + Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSTVLRARFKIEKPNIDEKKFFKIVHACFSTRRKTILNA 233 Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + +++ A ++ NLRAE+LS++D+ R+ + Sbjct: 234 LSNHFDIEKDKLKRIINMAEVDENLRAEDLSLDDYIRLYKCFEE 277 >gi|288800845|ref|ZP_06406302.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str. F0039] gi|288332306|gb|EFC70787.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str. F0039] Length = 279 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 17/275 (6%) Query: 13 ILSHYK------IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + HYK + PKK +GQ+FL+D +I ++IA++ + I V+EIG G G LTQ ++ Sbjct: 3 LCKHYKYGMIKQVKPKKNLGQHFLIDQSIARRIADTVDACPDIPVLEIGPGMGVLTQYIV 62 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 R +E D++ L + R II +D L++D F+ + N P Sbjct: 63 QKQ-RPFKAVEIDRESVTYLNEAFPTL--RENIIGNDFLQMDLNDVFD-GKSFVLTGNYP 118 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y+I +++ F + P T + Q+EV RI ++ + YG LSVL Sbjct: 119 YDISSQIFFKMLDYKELIP---CCTGMIQREVALRIASEPGNKSYGILSVLIQAWYDVEY 175 Query: 187 MFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 +F + +VF P PKV S VI + + C + K++ + F +RRK LR SLK++ Sbjct: 176 LFTVDENVFNPPPKVKSAVIRMTRNKVEKLDCDEQLFKRVVKTVFNQRRKMLRVSLKQIF 235 Query: 246 GENLLHQAGIE---TNLRAENLSIEDFCRITNILT 277 + A E R E LS+ F +TN++ Sbjct: 236 NVSAARPAFYEQEIMTKRPEQLSVAQFVELTNLVE 270 >gi|68536597|ref|YP_251302.1| dimethyladenosine transferase [Corynebacterium jeikeium K411] gi|119365018|sp|Q4JU23|RSMA_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68264196|emb|CAI37684.1| dimethyladenosine transferase [Corynebacterium jeikeium K411] Length = 316 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 38/301 (12%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K +GQNF+ D N ++KI +++ V+EIG G G+LT LL Sbjct: 12 PNEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ---HPNRLEIIQDDALKVDFEKFFNISSPI--RI 121 GA V +E D + L + + +I DA++V + F + P+ + Sbjct: 72 EAGA-SVTAVEIDPRLAAKLPATLEEQGAAEADVAVILKDAMEVAVQDFADAGRPLPTAL 130 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + + P + + ++ Q EV +R+ A S YG SV G+ Sbjct: 131 VANLPYNVSVPVLLHMLEE---FPSIDRVLVMVQLEVADRLAAAPGSKIYGVPSVKAGFY 187 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN------------------------PIPC 217 I +VF+P+PK+ S ++ + Sbjct: 188 GSVARAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQSGAEQFDADQGIEQLDAQK 247 Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 + + AF +RRKTLR +L G E L AGI+ LR E LS E F ++ Sbjct: 248 LRREVFDLADAAFLQRRKTLRAALSGHFGSGQAAEEALRSAGIDPTLRGEKLSTEQFVQL 307 Query: 273 T 273 Sbjct: 308 A 308 >gi|218258231|ref|ZP_03474633.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii DSM 18315] gi|218225574|gb|EEC98224.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii DSM 18315] Length = 290 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 89/256 (34%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL I ++IA++ + V+EIG G G LTQ LL G + V+E Sbjct: 33 VKPKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVEL 91 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L+ + I+ +D L++D K F +I N PYNI +++ F + Sbjct: 92 DMESVDYLEQNFPALEGK--ILAEDFLRLDLSKLF--PDQFCVIGNYPYNISSQIFFKVL 147 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + QKEV ER+ A S YG LSVL + +F +S VF P Sbjct: 148 DYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSEKVFDPP 204 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + C E L K + + +F +RRKTLR S+K L G++ Sbjct: 205 PKVKSAVIRMVRNNRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYPLPIF 264 Query: 258 NLRAENLSIEDFCRIT 273 + R E LS+E F +T Sbjct: 265 DKRPEQLSVEQFVELT 280 >gi|226500226|ref|NP_001150423.1| LOC100284053 [Zea mays] gi|195639144|gb|ACG39040.1| dimethyladenosine transferase [Zea mays] Length = 354 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 20/272 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I +K GQ+ L + ++ I +G TV+EIG G GNLT+ LL G + V+ +E Sbjct: 22 GIPFEKSKGQHILRNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVE 81 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L HP +RL++IQ D LK D F +AN+PY I + L F Sbjct: 82 LDPRMVLELNRRFQGHPLSSRLKVIQGDVLKCDLPYF------DICVANIPYQISSPLTF 135 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 +S P + ++FQ+E R+ AQ Y RLSV ++ + + + + F Sbjct: 136 KLLSHR---PIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNF 192 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S+V+ P P + + + F ++ KTL K+ LL + Sbjct: 193 RPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNKTLGSLFKQKRVLELLEKNYK 252 Query: 256 ---------ETNLRAENLSIEDFCRITNILTD 278 + + E +S +D + N++ D Sbjct: 253 TMQSLQTVQDAEMGEEKMSADDVALLANMVED 284 >gi|212278085|gb|ACJ23057.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 11/254 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFC 270 RAE+++ E C Sbjct: 235 PQDRAEHIAPEKVC 248 >gi|315501792|ref|YP_004080679.1| dimethyladenosine transferase [Micromonospora sp. L5] gi|315408411|gb|ADU06528.1| dimethyladenosine transferase [Micromonospora sp. L5] Length = 289 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 15/279 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+ Sbjct: 1 MTGLLGPAEIRELAARIGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNIS 116 LT LL + A V +E D L + + RL + DAL+V + Sbjct: 61 LTLALLPVAAH-VHAVELDPALAAALPETAARFAGAAAERLTVHPADALRVTADDLAG-P 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +P ++ANLPYN+ ++ + ++ P ++ QKEV +R+ A S YG SV Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSKVYGIPSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRK 235 W ++ + P+VF+P P V S ++ F P P +++ + AF +RRK Sbjct: 176 KLAWYARSRAAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRK 235 Query: 236 TLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 TLR + L AG++ + R E+L++E F Sbjct: 236 TLRAALAGWAGGADRAAAALTAAGVDPSARGESLTVEQF 274 >gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] Length = 244 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 100/243 (41%), Positives = 145/243 (59%), Gaps = 5/243 (2%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 L +IA G L + E+G GPG LT+ +L G R ++ +E+D + P L +++ P Sbjct: 2 LDRIAAIPGPLTDASAFEVGPGPGGLTRAILRAGGR-LVAVERDDRCLPALAELADAFPG 60 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLLF 154 +L++I DA+++D + IIANLPYN+GT LL W+SA P P+W SLTL+F Sbjct: 61 QLKVIAGDAMQIDAQ--AEAGDGAHIIANLPYNVGTPLLVGWLSAAWTPLPWWSSLTLMF 118 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 Q EV ERI A+ + HYGRL+VL+ WR+ A + + F P PKV S V+H P P Sbjct: 119 QMEVAERIVAKPGTDHYGRLAVLSQWRSDARIAMKVHRSAFTPPPKVMSAVVHITPKPTP 178 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGENLLHQAGIETNLRAENLSIEDFCRIT 273 L+ L+++T AFG+RRK +RQSLK L G + L GI+ RAE +S+E+F + Sbjct: 179 EGVQLKLLERLTAAAFGQRRKMMRQSLKGLPGALDALDAEGIDPQRRAETVSVEEFVAVA 238 Query: 274 NIL 276 + Sbjct: 239 RRM 241 >gi|146298606|ref|YP_001193197.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101] gi|189028808|sp|A5FLP4|RSMA_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146153024|gb|ABQ03878.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101] Length = 261 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 90/261 (34%), Positives = 132/261 (50%), Gaps = 9/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK++GQ+FL D +I K IA++ V+EIG G G LT+ LL VIE Sbjct: 3 KVKAKKHLGQHFLKDESIAKAIADTLSLKGYDEVLEIGPGMGVLTKYLLDKPVN-TRVIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L + ++ II +D LK + + + II N PYNI ++++F Sbjct: 62 IDTESVEYLGVNYPKLKDK--IISEDFLKYNINQVYENKQ-FAIIGNFPYNISSQIVFRT 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + + FQKEV ERI +K S YG LSVL +F +S +VF P Sbjct: 119 LEFRDQIPEFSGM---FQKEVAERICEKKGSKTYGILSVLAQAFYDTEYLFTVSENVFIP 175 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ + +PC + + + AF +RRKTLR SLK L + L + I Sbjct: 176 PPKVKSGVMKMTRKEDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLNLSDKLRE-DII 234 Query: 257 TNLRAENLSIEDFCRITNILT 277 + R E LS+E+F +T + Sbjct: 235 FDKRPEQLSVEEFIVLTQKIE 255 >gi|297624761|ref|YP_003706195.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093] gi|297165941|gb|ADI15652.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093] Length = 264 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 20/275 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L + + K GQNFL+D +L+ I ++ TV+E+G G G LT+ L Sbjct: 1 MRELLERHGLRADKGFGQNFLVDEGVLRSIVAAAELGPQSTVLEVGPGLGVLTRELAAR- 59 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +VI +E D++ P+L++ + N + ++ D L D S ++ANLPYN+ Sbjct: 60 AGRVISVELDRRLLPVLQETLAGLGN-VTLVHGDGLTFDLSCLPEGS---AMVANLPYNV 115 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 GT +L + + + + +L Q+EV ER++A +P YG LSV+ +A + Sbjct: 116 GTPILVRALESGR----FARVVVLLQREVAERLSATPGTPAYGALSVVVAHFGRARSVRL 171 Query: 190 ISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-- 245 + P F P P+VTS+V+ P P P +L ++ + AF RRKTL+++L G Sbjct: 172 VKPSAFSPPPEVTSSVVRLDLTPGRAPDP----ALFRLVRHAFAHRRKTLKKNLLMAGYP 227 Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L G+E +RAE LS+E F + L Sbjct: 228 AERVARALQTLGLEAQVRAERLSVEQFRALRQELE 262 >gi|254820388|ref|ZP_05225389.1| dimethyladenosine transferase [Mycobacterium intracellulare ATCC 13950] Length = 310 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 19/290 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P+K +GQNF+ D N ++++ +SG V+E+G G G+LT LL Sbjct: 16 RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGIGRSDHVLEVGPGLGSLTLALL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L D ++H + RL ++ D L + ++ P ++ Sbjct: 76 DRGA-PVTAVEIDPVLAERLPDTVAEHSHSEIQRLSVLNRDILTLRRDEL--DVQPTAVV 132 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + ++ P +T++ Q EV ER+ A+ YG SV + Sbjct: 133 ANLPYNVAVPALLHLLAE---FPSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 189 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 +SP VF+P P+V S ++ + ++ ++ + AF +RRKT R Sbjct: 190 TVRRCGTVSPTVFWPIPRVYSGLVRIDRYATSPWPTADAFRRQVFELVDIAFAQRRKTCR 249 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + G + L A I+ R E LSI+DF R+ D A Sbjct: 250 NAFLDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRSHSA 299 >gi|139438654|ref|ZP_01772138.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC 25986] gi|133775734|gb|EBA39554.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC 25986] Length = 286 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 16/287 (5%) Query: 1 MTMN--NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MT + + + +L + + K +GQNFL+D +++++I E + V+E+G G Sbjct: 1 MTTSPLANPTATRELLEEFGLATKHRLGQNFLIDNHVIERICELAELAGDERVLEVGPGC 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNIS 116 G LT LL A V IE D + P+L ++ + N I DALKV E+ Sbjct: 61 GTLTLALLQEAA-CVTSIEADPELEPVLDAHAADYAN-FRFIMGDALKVGPEQIEQAAGG 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P +ANLPYN+ ++ + P + ++ QKEV +RI A + YG + Sbjct: 119 EPTVFVANLPYNVAATIILQFFQTM---PALKRAVVMVQKEVADRIAAVPGNKTYGGYTA 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRR 234 G + T F++ P F P+P V S V+ P E + ++ AF +RR Sbjct: 176 KLGLYAQVTGRFEVPPRCFMPAPHVDSAVVRIDRVDGVVPEGLDREFVARVIDAAFAQRR 235 Query: 235 KTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDFCRITNIL 276 KT+R S+ G +++L A GI RAE L + DF R+ L Sbjct: 236 KTIRNSMSANGFAKDVLDAAIETCGIAPTTRAETLDVADFVRLAQEL 282 >gi|15644188|ref|NP_229237.1| dimethyladenosine transferase [Thermotoga maritima MSB8] gi|27151616|sp|Q9X1F1|RSMA_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|4982002|gb|AAD36507.1|AE001795_10 dimethyladenosine transferase [Thermotoga maritima MSB8] Length = 279 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 18/261 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + KK++GQ FL D I K+I +++ V+EIGAG G LT+ L GAR V Sbjct: 26 LKKYGVRLKKHLGQVFLSDDRIAKRIVKAAELTPEDVVVEIGAGAGTLTEELAKTGAR-V 84 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ PIL++ S++PN +E+ +D LK N+ ++N+PYNI L Sbjct: 85 IAYEIDESLAPILQERLSKYPN-VELRFEDFLK-----AKNVPEGAICVSNIPYNITGPL 138 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I ++ ++ QKEVGERI A+ YG LSV+ + +FD+S Sbjct: 139 MEKIIEWK-----FKRAIVMIQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 193 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V STV+ P+ E KK F K+RKTL+ +L+ + Sbjct: 194 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLRPFLS--IFE-- 247 Query: 254 GIETNLRAENLSIEDFCRITN 274 G++ + RAE L++E+ + Sbjct: 248 GVDLSRRAEQLTVEEIVELYE 268 >gi|319796617|ref|YP_004158257.1| dimethyladenosine transferase [Variovorax paradoxus EPS] gi|315599080|gb|ADU40146.1| dimethyladenosine transferase [Variovorax paradoxus EPS] Length = 254 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 12/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I +K GQ+FL D I+ I G ++EIG G LTQ L+ R + VIE Sbjct: 3 HIARKRFGQHFLSDGGIIDAIVHEIAPQPGDAMVEIGPGLAALTQPLVERLGR-LTVIEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136 D+ L++ HP +LE+I+ D LKVDF + P+R++ NLPYNI T +LF+ Sbjct: 62 DRDLAKRLRE----HP-QLEVIESDVLKVDFAELAAKAAPKPLRVVGNLPYNISTPILFH 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + QKEV +R+ A+ + Y RLSV+ WR + + P F Sbjct: 117 LLG---FAHLITDQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYDMQNVLFVPPESFD 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S V+ +P P L +I Q AF +RRK LR +L + + + Sbjct: 174 PPPRVDSAVVRMVPLAQPPVVDAARLGEIVQVAFSQRRKILRHTLGKWLETHGFEG-EFD 232 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE + + ++ + + Sbjct: 233 PQRRAEEVPVAEYVALAQAV 252 >gi|114565628|ref|YP_752782.1| rRNA (adenine-N(6)-)-methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336563|gb|ABI67411.1| dimethyladenosine transferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 294 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 92/290 (31%), Positives = 146/290 (50%), Gaps = 19/290 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ ++ Y I P+K GQNFL+D NIL+KIA ++EIG G G Sbjct: 1 MKRTDSLSGIRYYMNKYGIHPRKKWGQNFLVDGNILRKIAHLCNPGCEKLLVEIGPGLGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116 LT+ L + ++ V+ IE D L + N + ++ D L++D E+ + + Sbjct: 61 LTRELAGI-SKGVLAIEIDFGLREALAESLQGL-NNIRLLFADILQIDLEEELSKAFGGE 118 Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 S ++ AN+PYNI T ++F + + ES TL+ QKEV RI A +S YG L Sbjct: 119 DISGYKVCANIPYNITTPIIFKLLETCSQ---MESATLMMQKEVASRILASPDSKEYGLL 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGK 232 +++T + +A + +S + F+P P+V S+VI P + KK+ + +F K Sbjct: 176 TLMTAYYAEAEYLMPVSRNCFYPRPEVDSSVIQLRPIKGKRVQVKDESNFKKLLRVSFQK 235 Query: 233 RRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276 RRKT+ L +L+ GI+ R ENLSIE F I++ L Sbjct: 236 RRKTILNICVDLFSVEKAEIHSILNSLGIDPKSRPENLSIEQFALISDTL 285 >gi|325848863|ref|ZP_08170373.1| dimethyladenosine transferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480507|gb|EGC83569.1| dimethyladenosine transferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 282 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++K I Y K +GQNFL+D N + KI + S G ++EIG G G Sbjct: 1 MKKLYSPKTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLSEVS-GENILEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 ++Q + +K++VIE D+ PILKD + N ++II D LK D +K Sbjct: 60 ISQEMAKTC-KKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPY I T ++ D + +T++ QKEV +R+ A + Y LSV Sbjct: 118 DFKVVSNLPYYITTPIIEKLFEEDLP---CKDMTIMVQKEVADRMKADEKEKDYSSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + ++ T F + VF P PK+ S V+ L + SL I + F KRRKT+ Sbjct: 175 IKYYSEITGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEDVDVNSLFNIVRAGFNKRRKTI 234 Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277 SL + + + ++ NLRAENLS++DF I N Sbjct: 235 LNSLSSVIEKEDLKKIFENLSLKENLRAENLSLDDFINIANEYE 278 >gi|182438149|ref|YP_001825868.1| dimethyladenosine transferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778799|ref|ZP_08238064.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf. griseus XylebKG-1] gi|226732628|sp|B1VUF9|RSMA_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|178466665|dbj|BAG21185.1| putative dimethyladenosine transferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659132|gb|EGE43978.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf. griseus XylebKG-1] Length = 291 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 126/279 (45%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ TV+E+G G G+LT LL Sbjct: 12 PADIRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDTVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V+ +E D L + + +R ++ DA+ V +P ++ Sbjct: 72 E-AADRVVAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLVTE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQSEVADRLAARPGNKVYGVPSVKANWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 I +VF+P+P V S ++ + PI + + AF +RRKTLR + Sbjct: 185 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPIATTASRAEVFAVVDAAFAQRRKTLRAA 244 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274 L E L AGI R E L++E+F I Sbjct: 245 LSGWAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283 >gi|212278087|gb|ACJ23058.1| KsgA [Neisseria gonorrhoeae] Length = 259 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 11/254 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIEDFC 270 RAE+++ E C Sbjct: 235 PQDRAEHIAPEKIC 248 >gi|145593340|ref|YP_001157637.1| dimethyladenosine transferase [Salinispora tropica CNB-440] gi|145302677|gb|ABP53259.1| dimethyladenosine transferase [Salinispora tropica CNB-440] Length = 289 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 15/279 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT ++ + + + P K +GQNF+ D N +++I ++G V+E+G G G+ Sbjct: 1 MTGLLGPAEIRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTAQDVVLEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS 116 L + L A V +E D L + +++H RL + + DAL+V + + Sbjct: 61 L-TLALLPAAAHVHAVEIDPVLAAALPETAARHAGPAADRLSVHRADALRVTAGQLAD-P 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +P ++ANLPYN+ ++ + ++ P ++ QKEV +R+ A S YG SV Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSRVYGVPSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRK 235 W + + P+VF+P P V S ++ F +P + E + + AF +RRK Sbjct: 176 KLAWYARVHAAGKVPPNVFWPVPNVDSGLVAFTRRESPGVGVSRERIFAVVDAAFAQRRK 235 Query: 236 TLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDF 269 TLR +L +L AG++ R E L++E F Sbjct: 236 TLRAALAGWAGGADRAAAVLTAAGVDPGARGEALTVEQF 274 >gi|312138652|ref|YP_004005988.1| rRNA dimethyladenosine transferase ksga [Rhodococcus equi 103S] gi|311887991|emb|CBH47303.1| rRNA dimethyladenosine transferase KsgA [Rhodococcus equi 103S] Length = 292 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 19/282 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I +G TV+E+G G G+LT LL Sbjct: 16 PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALL 75 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + +V+ +E D + L D + + +RL ++ DA++V + + P ++ Sbjct: 76 DV-VDRVVAVEIDPKLAARLPATVADRAPELVDRLTVVGADAMRVMPDDV--PAEPTAVV 132 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P + ++ Q EV +R+ A S YG SV + Sbjct: 133 ANLPYNVAVPVLLHLFAE---FPSLRTALVMVQAEVADRLAATPGSKVYGVPSVKANFFG 189 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238 + VF+P P+V S ++ + P P + + AF +RRKTLR Sbjct: 190 TVKRAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLR 249 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 +L G E L AGIE + R E L F R+ N+ Sbjct: 250 AALAGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 291 >gi|74318358|ref|YP_316098.1| dimethyladenosine transferase [Thiobacillus denitrificans ATCC 25259] gi|119365860|sp|Q3SGF7|RSMA_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|74057853|gb|AAZ98293.1| ribosomal RNA 16S rRNA dimethylase [Thiobacillus denitrificans ATCC 25259] Length = 255 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 95/261 (36%), Positives = 132/261 (50%), Gaps = 11/261 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQNFL+D I+ I + G TV+EIG G G LT+ LL + +E Sbjct: 2 HTPRKRFGQNFLIDDGIVHAIVNAIHPQAGETVVEIGPGLGALTRPLLERLPH-LHAVEL 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ + P RL + DALK D F ++ +RI+ NLPYNI T LLF+ + Sbjct: 61 DRDIIARLRR--AWPPERLTLHAGDALKFD---FGSLGDDLRIVGNLPYNISTPLLFHLL 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + + QKEV ER+ A + YGRLS++ R + D+ P F P Sbjct: 116 E---FAPRIRDMHFMLQKEVVERMVASPATADYGRLSIMLQRRFHMEWLLDVPPTAFDPP 172 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP +P E+L ++ AF +RRKTLR +L L GI+ Sbjct: 173 PKVESAVVRLIPKSTAEVPSVDEALFARVVAAAFAQRRKTLRNTLSALMRPEDFVALGID 232 Query: 257 TNLRAENLSIEDFCRITNILT 277 LRAE L + D+ IT L Sbjct: 233 PGLRAEALHVADYEAITAYLA 253 >gi|309812813|ref|ZP_07706551.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185] gi|308433230|gb|EFP57124.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185] Length = 297 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 18/274 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + ++ + + + P K GQNF++D N ++KI +G TV+E+G G G+LT L Sbjct: 19 SAADIRELAERHGVRPTKTWGQNFVIDPNTVRKIVRLAGVGADDTVVEVGPGLGSLTLAL 78 Query: 66 LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 L A + V+E D L + + QH ++L ++Q DA+ VD + +P + Sbjct: 79 LPAVAH-LSVVEVDPNLAAQLPATVERFAPQHASKLNVVQADAMTVDSLE----PAPTAL 133 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ ++ N++ P + + ++ Q EV +R+ A+ S YG SV W Sbjct: 134 VANLPYNVSVPVVLNFLE---HFPSLQRVLVMVQLEVAQRLAAEPGSKVYGVPSVKAAWY 190 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQS 240 + + +VF+P+P V S ++ + P + + AF +RRKTLR + Sbjct: 191 ADVRLADRVGRNVFWPAPNVDSGLVSLVRRDPPTTEATRAQVFACIDAAFAQRRKTLRAA 250 Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDF 269 L E L AGI+ R E L I++F Sbjct: 251 LAGWAGGADRAEAALVAAGIDPRTRGERLGIDEF 284 >gi|149927947|ref|ZP_01916197.1| dimethyladenosine transferase [Limnobacter sp. MED105] gi|149823386|gb|EDM82619.1| dimethyladenosine transferase [Limnobacter sp. MED105] Length = 256 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 11/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K KK GQ+FL D ++L + T++EIG G G LT LL + VIE Sbjct: 2 KHQAKKRFGQHFLTDQSVLSNLIGEMRPRADDTLVEIGPGLGALTFWLLK-AVNHLQVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ ++L + + D LK DF + +P R++ NLPYNI + +LF Sbjct: 61 IDRDLAEKLRT--GNWKDKLTVHEVDVLKFDFRQL---PAPFRVVGNLPYNISSPILFAL 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + QKEV +R+ A + YGRLSV+ +FD+ P F P Sbjct: 116 LEVADQ---VIDQHFMLQKEVIDRMVAAPKTSDYGRLSVMLQAYYDMDHLFDVPPECFDP 172 Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S ++ +P E ++ AF +RRK LR + + E++ AGI Sbjct: 173 PPRVMSAIVRMVPKQAQERAAIPGEIFSRVVSTAFSQRRKMLRNTWANVVPEHIASAAGI 232 Query: 256 ETNLRAENLSIEDFCRITNILT 277 RAE ++ E F ++ +L Sbjct: 233 ALTARAEEIAPEQFVQVAQMLA 254 >gi|262201474|ref|YP_003272682.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247] gi|262084821|gb|ACY20789.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247] Length = 305 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 19/281 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I SG V+E+G G G+LT LL Sbjct: 31 PAQIRQLAAEVGVRPTKTLGQNFVHDANTVRRIVAESGVGADDVVLEVGPGLGSLTLALL 90 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V+ +E D L + ++ E+I DAL+V + +P ++ Sbjct: 91 EQ-AGRVVAVEIDPVLAQRLPRTIAERAAARQGDFEVITADALRVTRDDL--PVAPTALV 147 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ P + ++ Q EV +R+ A+ S YG SV + Sbjct: 148 ANLPYNVAVPVLLHLLA---VFPEIRTALVMVQAEVADRLAAEPGSRTYGVPSVKARYHG 204 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQ 239 + VF+P PKV S ++ + P E ++ + AF +RRKT+R Sbjct: 205 TVRRAGAVGRSVFWPEPKVESGLVRIE-RTDTYPVDDELRGAVFAVVDAAFAQRRKTMRS 263 Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 +L G E L AGI+ +R E L + DF R+ Sbjct: 264 ALAGWAGSPAEAERRLRAAGIDPGIRGERLGVADFVRLAQT 304 >gi|306817223|ref|ZP_07450970.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239] gi|304650025|gb|EFM47303.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239] Length = 303 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 137/299 (45%), Gaps = 28/299 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ + I P K GQNF+ D +++IA + V+EIG G G+ Sbjct: 1 MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSPAEVVLEIGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVD----FEKFF 113 LT LL GAR VI +E D + L H +E + DAL +D Sbjct: 61 LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+ ++ANLPYN+ T +L + + P ++ Q EV +R+ A+ YG Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----------- 222 SV W A F +S VF P P V STV+ F + +ESL Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236 Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 + AFG RRKTLRQSL RL G LL +AGI+ LRAENL + DF + + Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295 >gi|308176575|ref|YP_003915981.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117] gi|307744038|emb|CBT75010.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117] Length = 295 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 18/276 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + I P K +GQNF++D N +++I ++ TV+E+G G G+LT ++ Sbjct: 12 ATEIRRLAEELGIRPTKTLGQNFVIDGNTIRRIVAAAKVDPSETVLEVGPGLGSLTLGIM 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH-PNR---LEIIQDDALKVDFEKFFNISSPIRII 122 A KV+ +E D L ++ P R L +I DA+KV P ++ Sbjct: 72 DAAA-KVVAVEIDPPLAKRLPQTMAEFRPGREDDLTVILSDAMKVTE----LPGEPTSLV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + P + ++ Q EV +R+ A + YG SV W Sbjct: 127 ANLPYNVAVPVVLHLLE---HFPSIRNGLVMVQDEVADRMAATPGNKIYGVPSVKGAWYG 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+PK+ S ++ F + + I AF +RRKTLR +L Sbjct: 184 TMRKAGVIGMNVFWPAPKIHSGLVGFTRDKDRSDAPDRREVFAIIDAAFAQRRKTLRAAL 243 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 G E +L AGI+ R E L IE + I Sbjct: 244 SGWAGSGARAEQILVAAGIDPKERGEKLDIEQYIDI 279 >gi|158334916|ref|YP_001516088.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017] gi|189028799|sp|B0CC89|RSMA_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158305157|gb|ABW26774.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017] Length = 269 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 9/268 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L +L++I ++ ++EIG G G LT+ LL A+ V+ +E D Sbjct: 3 RPRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQ-AQSVVSVELD 61 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L+ + N +++ D L +D P +++AN+PYNI + +L + Sbjct: 62 RDLCKSLRHTFNDQEN-FTLLELDFLNLDVAAELTEPLPNKVVANIPYNITSPILSKLLG 120 Query: 140 ADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 P P +E++ LL QKEV +R+ A+ S + LSV + + ++ + F P Sbjct: 121 RIDAPAQPVYETVVLLIQKEVADRLVAEPGSKIFNGLSVRSQYLADCELICPVPASAFKP 180 Query: 198 SPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--- 253 +PKV S V+ P P P + L + + F RRK LR +LK L + L + Sbjct: 181 APKVESAVVRLTPRPYPQPVQNPQWLSTLLKVGFSSRRKMLRNNLKSLVDRDQLSECLNT 240 Query: 254 -GIETNLRAENLSIEDFCRITNILTDNQ 280 I RAE+LS+ + +++ + +Q Sbjct: 241 LNISLQARAEDLSVTQWIALSDSVHPSQ 268 >gi|312889917|ref|ZP_07749461.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603] gi|311297449|gb|EFQ74574.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603] Length = 259 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 14/266 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D NI +KI S T V+E+G G G L+ LL + +I+ Sbjct: 4 VRAKKHLGQHFLTDKNIAEKIVNSLKLHGNYTQVLEVGPGMGILSDFLLQKTDYQTYLID 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + L+ Q +RL I D L++DF K F +SP II N PYNI +++LF Sbjct: 64 IDTESYQFLQKKYPQLGSRL--INADFLEMDFGKTF--TSPFAIIGNFPYNISSQILFKV 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + +FQKEV ER +A+ S YG LSV K +F + VF P Sbjct: 120 LDNRQQ---VLEVVGMFQKEVAERCSAKPGSKEYGILSVFLQAYYKVEYLFTVKAGVFNP 176 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + P + C + ++ + F +RRKTLR ++ + + + + Sbjct: 177 PPKVLSAVIRLTRNDTPELNCDEKLFWQLVKAGFNQRRKTLRNAISSVIPKEKITD---D 233 Query: 257 T--NLRAENLSIEDFCRITNILTDNQ 280 +LRAE LS+ DF +TN ++ + Sbjct: 234 PLLDLRAERLSVADFVTLTNKVSAER 259 >gi|188996789|ref|YP_001931040.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1] gi|254807892|sp|B2V963|RSMA_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|188931856|gb|ACD66486.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 258 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI PKK +GQ+FL+ N+++KI + ++EIG G G LT+ +L + + IE Sbjct: 3 KIKPKKRLGQHFLISKNVIEKIVDEINISKEDIIVEIGPGTGALTEEILLRNPKILYAIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D P+L++ S + N ++I+ D V+ + + I+++ NLPYN+ + ++ Sbjct: 63 IDTSVHPVLEEKFSIYSN-FKLIKSDFFDVNLYELISDEEKIKLVGNLPYNVASLMI--- 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I E + QKEV E++ A+ + Y LSV + + F P Sbjct: 119 IDCAFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDIKYVMSVPARFFNP 178 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS V+ P N ++ K F RRK + K E +L++AGI Sbjct: 179 PPKVTSAVVKLTPKQNIAINNVKKYKNFISHLFQNRRKMI----KSKIEEEMLNKAGISP 234 Query: 258 NLRAENLSIEDFCRITNILTDN 279 NLRAE LS+EDF RI ++ ++ Sbjct: 235 NLRAEELSVEDFIRIFGVVEND 256 >gi|307324292|ref|ZP_07603500.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113] gi|306890023|gb|EFN21001.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113] Length = 289 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 23/290 (7%) Query: 1 MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 M+ + ++ + + + P K GQNF++D N +++I ++G V+E+G Sbjct: 1 MSSTDPDVLLGPADIRALAARLGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEK 111 G G+LT LL A +V +E D L + + ++ DAL+V Sbjct: 61 PGLGSLTLALLE-AADRVTAVEIDDVLAAALPATVEARLPHRADHFALVHHDALRVTE-- 117 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 +P ++ANLPYN+ +L + + P E ++ Q EV +R+ A S Y Sbjct: 118 -LPGPAPTALVANLPYNVAVPVLLHMLGR---FPTIERTLVMVQAEVADRLAAPPGSKVY 173 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229 G SV W I +VF+P+P V S ++ I P+ E + + A Sbjct: 174 GVPSVKAAWYAHVKRAGAIGRNVFWPAPNVDSGLVSLIRRDEPLRTTATREEVFAVVDAA 233 Query: 230 FGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 F +RRKTLR + E L AG+ R E+L++EDF I Sbjct: 234 FAQRRKTLRAALAGWAGSAGAAEEALKAAGVSPQARGESLTVEDFAAIAE 283 >gi|58584664|ref|YP_198237.1| dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311641|sp|Q5GSM9|RSMA_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58418980|gb|AAW70995.1| Dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 261 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 102/264 (38%), Positives = 146/264 (55%), Gaps = 8/264 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I K+I +G+L+ VIEIG G G LT+ +L + + Sbjct: 1 MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD + ++H + I++ DAL V E+ I P+++IANLPYNI L Sbjct: 61 LAIEKDSNLVKCHDQLLNEHQGKFRIVEADALYVVEEEL--IERPVKVIANLPYNISLAL 118 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 W++ + + TL+FQKEV +RI A+ NS YG LSVL+ FDI P Sbjct: 119 FLKWLNK---IKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPK 175 Query: 194 VFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250 FFP PKV S+VI P LE+L K+T+ F +RRK LR SL+ + E L Sbjct: 176 EFFPRPKVYSSVITVKPLPTQRFAVNLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETAL 235 Query: 251 HQAGIETNLRAENLSIEDFCRITN 274 A + N R +NL++E FC + N Sbjct: 236 ENAKLSGNERPKNLTVEQFCLLAN 259 >gi|228471196|ref|ZP_04056009.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3] gi|228307011|gb|EEK16093.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3] Length = 271 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 126/258 (48%), Gaps = 7/258 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KKY+GQ+FL DL ++IA+S G ++E+G G G LTQ LL G + VI+ Sbjct: 4 VRAKKYLGQHFLTDLGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136 D + L Q II+ D LK+ E+ +P +I N PYNI +++ F Sbjct: 63 DHESIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADTPFVVIGNYPYNISSQIFFR 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + Q EV +R+ A YG LSVL +F +S F Sbjct: 123 ILELRERIPAVAGM---LQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFN 179 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV V+ + +PC + K++ + AFG+RRK LR +L+ L G+ + Sbjct: 180 PPPKVDGGVMIARRNGRTSLPCDETNFKRVVKTAFGQRRKMLRNALQSLFGKEFPYADHD 239 Query: 256 ETNLRAENLSIEDFCRIT 273 LRAE LS+EDF +T Sbjct: 240 IFTLRAERLSVEDFIGLT 257 >gi|260591378|ref|ZP_05856836.1| dimethyladenosine transferase [Prevotella veroralis F0319] gi|260536744|gb|EEX19361.1| dimethyladenosine transferase [Prevotella veroralis F0319] Length = 278 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 13/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I K+IA++ + I V+EIG G G LTQ L+ R V +E Sbjct: 15 VKPKKNLGQHFLTDLSIAKRIADTVDACPEIPVLEIGPGMGVLTQYLVE-KPRVVKAVEI 73 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + + I+ +D L++D + F+ + N PY+I +++ F + Sbjct: 74 DAESVAYLYERFPKLHEN--ILGEDFLQMDLTQIFD-GKQFVLTGNYPYDISSQIFFKML 130 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ A S YG LSVL +F + +VF P Sbjct: 131 DYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLIQAWYDVEYLFTVDENVFNPP 187 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + I C + K++ + F +RRK LR SL+++ + ++ Sbjct: 188 PKVKSAVIRMTRNDVTDIGCNEQLFKRVVKTVFNQRRKMLRVSLRQIFNNGKPTDGFYEQ 247 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 I R E LSI F ++TN++ + Sbjct: 248 DI-MTKRPEQLSIPQFVKLTNMVEEQ 272 >gi|313886609|ref|ZP_07820322.1| dimethyladenosine transferase [Porphyromonas asaccharolytica PR426713P-I] gi|332300878|ref|YP_004442799.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas asaccharolytica DSM 20707] gi|312923965|gb|EFR34761.1| dimethyladenosine transferase [Porphyromonas asaccharolytica PR426713P-I] gi|332177941|gb|AEE13631.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas asaccharolytica DSM 20707] Length = 271 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 124/258 (48%), Gaps = 7/258 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KKY+GQ+FL D ++IA+S G ++E+G G G LTQ LL G + VI+ Sbjct: 4 VRAKKYLGQHFLTDHGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFN 136 D + L Q II+ D LK+ E+ + P +I N PYNI +++ F Sbjct: 63 DHESIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADMPFVVIGNYPYNISSQIFFR 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + Q EV +R+ A YG LSVL +F +S F Sbjct: 123 ILELRERIPAVAGM---LQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFN 179 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV V+ + +PC + K++ + AFG+RRK LR +L L G+ + Sbjct: 180 PPPKVDGGVMIARRNSRTELPCDEANFKRVVKTAFGQRRKMLRNALMSLFGKEFPYADHE 239 Query: 256 ETNLRAENLSIEDFCRIT 273 LRAE LS+EDF +T Sbjct: 240 IFTLRAERLSVEDFISLT 257 >gi|297587466|ref|ZP_06946110.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516] gi|297574155|gb|EFH92875.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516] Length = 283 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 15/286 (5%) Query: 3 MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M+ + H +K IL + K +GQNFL+D N+++ I + S + VIEIG G G Sbjct: 1 MSYRLHQPSYIKEILDKFGFKFSKALGQNFLIDGNLIENIIDFSDITEDDYVIEIGPGFG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 LT+ L+ + + IE D + +LK N +II +D LKVD + + + Sbjct: 61 TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDRDN-FQIINEDVLKVDLNELNHGAKKF 118 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++ + + ES+T++ QKEV R+ A S Y LS+ Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMIQKEVANRMVADVGSKDYASLSLFVK 175 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + A ++ + VF P PKV S V++ E L+++ + F KRRKT+ Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTIVN 235 Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 S + +L + G++ NLRAENLS+ED+ I L + Sbjct: 236 SFTSGFVNVDKDKLKAILQELGLKENLRAENLSLEDYKNIVKKLNN 281 >gi|118580905|ref|YP_902155.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379] gi|118503615|gb|ABL00098.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379] Length = 271 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 14/269 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 P K +GQNFL+D NI+++I + V+E+G G G LT L AR ++++E Sbjct: 4 GRRPLKSLGQNFLVDRNIVERIIRGAALEPDDQVLEVGPGRGALTAHLSERVAR-LLLVE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136 D L + ++ R+ +I D L VD E +++ANLPYNI T++LF Sbjct: 63 YDHALADELSERYRENQ-RVRVIDGDILAVDLEALLEDGDKRWKVVANLPYNISTQVLFR 121 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + + L+ QKEVG+R+TA + YG +V+ G F + P F Sbjct: 122 FLELRS---RLSRMLLMLQKEVGDRLTALPDCSDYGVTTVILGLWFDIRREFVVPPGCFH 178 Query: 197 PSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR------LGGEN 248 P P+V S V+ F P P E +++ + AF RRKTL LKR G Sbjct: 179 PRPRVDSVVLSFTPLDAPRAQVGDEEIFRRVVKCAFATRRKTLFNCLKRGELVAPDGVAE 238 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL GI+ R E LS+E+F R++ L+ Sbjct: 239 LLESCGIDGRRRGETLSLEEFARLSRHLS 267 >gi|119356986|ref|YP_911630.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266] gi|166221658|sp|A1BFM9|RSMA_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119354335|gb|ABL65206.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266] Length = 269 Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 11/268 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K H +I KK +GQNFL D NI +KI S + T++EIG G G LT+ + T+ Sbjct: 2 IKVEYKHTEIAVKKKLGQNFLTDRNITRKIVTESETNPDDTILEIGPGFGALTREISTIT 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 R V+EKD + +++ + L +I+ D L VD +K P+R++ N+PY I Sbjct: 62 PR-FTVVEKDPKLASFIRNEYPE----LTVIEGDFLTVDLKKIAGEK-PLRVLGNIPYAI 115 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +LF + S TL+ Q EV RITA+ + YG L+V + +F Sbjct: 116 TSPILFKLLENR---HILLSATLMMQHEVALRITAKPRTKDYGILAVQMQAFCETKYLFR 172 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + VF P P V S VI P +N E + + AF +RRKTL+ +LK+ + Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKVNDPVSDREGFSRFVRCAFHQRRKTLQNNLKKTYELDR 232 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 + + + RAE LSI++F R+ + Sbjct: 233 VESSVL--KQRAEELSIDEFFRLFEQIR 258 >gi|257092443|ref|YP_003166084.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044967|gb|ACV34155.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 260 Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 129/262 (49%), Gaps = 9/262 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + +K GQ+FL+D I+ I + V+EIG G LT LL + V+E Sbjct: 3 HVARKRFGQHFLVDRQIIDSIVDLVAVQRRDLVVEIGPGLAALTDPLLRRL-DHLHVVEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ ++ RL I DAL DF + + +RI+ NLPYNI T LLF+ Sbjct: 62 DRDMVARLR--AAYSAERLSIHAGDALAFDFGRLAAEAGAKLRIVGNLPYNISTPLLFHL 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q+EV ER+ A S +GRLSV+ +R + ++ P F P Sbjct: 120 ---AGFGDGVRDMHFMLQREVVERMVAAPGSGDFGRLSVMLQYRFVMEWLLEVPPESFNP 176 Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S V+ IP L + + AF +RRK LR SLK L GE L + G+ Sbjct: 177 PPRVHSAVVRLIPRLAGDLAADDEAQFAAVVATAFAQRRKMLRNSLKSLVGEARLAEFGV 236 Query: 256 ETNLRAENLSIEDFCRITNILT 277 RAE+LS++D+ R+ N L Sbjct: 237 SPTCRAEDLSVDDYVRLANSLK 258 >gi|328950176|ref|YP_004367511.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus hydrothermalis DSM 14884] gi|328450500|gb|AEB11401.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus hydrothermalis DSM 14884] Length = 277 Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 18/275 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 +++ +L Y + K GQNFL+D N+L I ++ G V E+G G G LT+ L Sbjct: 11 PRTVRALLERYGLRADKRFGQNFLVDGNLLGVIVRTAQVRPGERVYEVGPGLGTLTRALA 70 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 GA KV IEKDQ+ P+L++ + + ++ DAL +++ + +ANLP Sbjct: 71 EAGA-KVTAIEKDQRLLPVLEETLAGL--NVTVVPGDALAYPWDE---VPPDSLFVANLP 124 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI T LL + A+ + L +L QKEV +R+ A+ + YG L++ + + Sbjct: 125 YNISTPLLTAVLRANR----FRRLVVLVQKEVADRLAARPATEAYGLLTLRAQYHARVER 180 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG- 245 + D P F+P P VTST++ P +L ++ + AF +RRKTLR++L+ G Sbjct: 181 VRDFPPQAFYPQPNVTSTLVRLESKGVP---DDPALFRLVEAAFAQRRKTLRKNLEAAGY 237 Query: 246 ----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G++ +R E L +E F R+ L Sbjct: 238 ARERVLAALSALGLDPRVRGEALDLEAFQRLKAAL 272 >gi|298373556|ref|ZP_06983545.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str. F0058] gi|298274608|gb|EFI16160.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str. F0058] Length = 262 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 98/269 (36%), Positives = 140/269 (52%), Gaps = 14/269 (5%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 TILS ++ PKKY GQ+FL DL I ++IAE+ + ++EIG+G G LTQ LL Sbjct: 5 TILSVQRVTPKKYFGQHFLKDLRIAERIAETI-PDNIKNILEIGSGTGALTQFLLKKNDT 63 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 ++ IE D++ L +H +L + +DD L DF++ F+ P I+ N PYNI T Sbjct: 64 NLLAIEIDKESCAYL----GEHYPQLRVFRDDFLTFDFDRIFD-DEPFGIVGNFPYNIST 118 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +LF + + PF+ + FQKEV ERI A + YG SVLT + +F +S Sbjct: 119 EILFKVLDNRSRIPFFAGM---FQKEVAERICATHGNKVYGITSVLTQAFYRTEYLFTVS 175 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 VF P PKV S VI + C I + AF +RRKT+R SLK + Sbjct: 176 EQVFVPPPKVKSAVIRLTRKEQQTLDCNERLFFSIVKTAFNQRRKTMRNSLKTFNAD--- 232 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + +LR E +S E F IT ++ + Sbjct: 233 -LSDKTFDLRPEQISQEQFIEITKLIQNQ 260 >gi|194336270|ref|YP_002018064.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme BU-1] gi|194308747|gb|ACF43447.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme BU-1] Length = 262 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 11/263 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +I KK +GQNFL D NI +KI +SG+ ++EIG G G LT+ ++ Sbjct: 8 KHTEIAVKKKLGQNFLTDRNITRKIVIASGATPQDNILEIGPGFGALTRAIMEFCPL-FT 66 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+EKD + ++ S++P +L +I+ D L+ D + P++I+ N+PY+I T +L Sbjct: 67 VVEKDHKLADFIR---SEYP-QLNLIEGDFLETDLAALAH-DKPLKILGNIPYSITTPIL 121 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + S TL+ Q EV RI A ++ YG L+V +F + V Sbjct: 122 FKLLEHR---HTFFSATLMMQHEVAMRIVAHPSTKDYGILAVQMQAFCDVNYLFKVGRKV 178 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P V S V+ P N + ++ + AF +RRKTL +LK NL A Sbjct: 179 FRPQPGVDSAVLQMTPKNNVPLNDADGFRRFVRIAFHQRRKTLLNNLKESY--NLESVAN 236 Query: 255 IETNLRAENLSIEDFCRITNILT 277 LRAE LS+EDF ++ L Sbjct: 237 HTLKLRAEALSVEDFFQLFRELK 259 >gi|311113076|ref|YP_003984298.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931] gi|310944570|gb|ADP40864.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931] Length = 312 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 131/279 (46%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + I P K +GQNF++D N +++I ++ D TV+EIG G G+LT L Sbjct: 30 PQEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVTAADITDDETVLEIGPGLGSLTLGLA 89 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 AR V+ +E D L ++ + ++ DALKV +P ++ Sbjct: 90 D-AARHVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTE----LPHTPDALV 144 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P ++ Q EV +R+ A+ S YG SV W Sbjct: 145 ANLPYNVAVPVLLHLFAQ---FPSICHALVMVQDEVADRLAAKPGSKIYGVPSVKASWYA 201 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK+ S ++ F P+ + + + AF +RRKTLR +L Sbjct: 202 EVFKAGVIGKNVFWPAPKINSGLVGFSMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAAL 261 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E +L +AGI R E L I + RI Sbjct: 262 ASWAGSGARAEAILTEAGITPTERGEKLDIHGYIRIAQA 300 >gi|324998153|ref|ZP_08119265.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudonocardia sp. P1] Length = 292 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 130/282 (46%), Gaps = 19/282 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF+ D N +++I +S+G V+E+G G G+LT LL Sbjct: 12 PADVRVLADRLGLRPTKKLGQNFVHDANTVRRIVKSAGVGADDVVLEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFN------IS 116 + AR V VIE D +L + + +RL + DA++V + + Sbjct: 72 PVAAR-VHVIEIDPVLAELLPETVAERAPGLADRLTVTGADAMRVSAAELAADAGGARPA 130 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P I+ANLPYN+ ++ + ++ P E ++ Q EV +R+ A S YG S Sbjct: 131 DPTAIVANLPYNVAVPVILHLLAE---LPSLERGLVMVQAEVADRLAAGPGSRQYGAPSA 187 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 W A + VF+P P V S ++ F H P + + + AF +RRK Sbjct: 188 KLAWYADARRAGPVPRAVFWPVPGVDSGLLAFTRHDPPSGADRAATFAVIEAAFAQRRKA 247 Query: 237 LRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 LR +L G L AGI+ RAE LS+ DF + Sbjct: 248 LRGALAGWAGSPAAAETALRAAGIDPTTRAERLSVTDFAAVA 289 >gi|227876332|ref|ZP_03994445.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243] gi|269976092|ref|ZP_06183091.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1] gi|227843105|gb|EEJ53301.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243] gi|269935685|gb|EEZ92220.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1] Length = 303 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 137/299 (45%), Gaps = 28/299 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ + I P K GQNF+ D +++IA + V+EIG G G+ Sbjct: 1 MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVD----FEKFF 113 LT LL GAR VI +E D + L H +E + DAL +D Sbjct: 61 LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+ ++ANLPYN+ T +L + + P ++ Q EV +R+ A+ YG Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----------- 222 SV W A F +S VF P P V STV+ F + +ESL Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236 Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 + AFG RRKTLRQSL RL G LL +AGI+ LRAENL + DF + + Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295 >gi|17230721|ref|NP_487269.1| dimethyladenosine transferase [Nostoc sp. PCC 7120] gi|27151584|sp|Q8YS62|RSMA_NOSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|17132324|dbj|BAB74928.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC 7120] Length = 271 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 13/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P+K Q++L L I +++ ++EIG G G LT+ LL + ++ +E Sbjct: 2 VRPRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLP-AVQSLVAVEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLL 134 D+ +L + N L ++Q D L +D F P +++AN+PYNI ++ Sbjct: 61 DRDLCELLAKQLGKKENFL-LLQGDFLTIDLAANLGSFPKFQKPNKVVANIPYNITGPII 119 Query: 135 FNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + + P ++S+ LL QKEV ER+ A+ S +G LSV + + D+ Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKSGSRTFGALSVRVQYLADCEFICDVPA 179 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F P PKV S V+ P IP + L+ + + FG +RK LR +L+ + + Sbjct: 180 SAFHPPPKVDSAVVRLRPRQIEIPVNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLS 239 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL Q I RAE++S + + ++ N+L Sbjct: 240 QLLEQLNINPQARAEDISTQQWVKLANLL 268 >gi|167835491|ref|ZP_02462374.1| dimethyladenosine transferase [Burkholderia thailandensis MSMB43] Length = 275 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 77/262 (29%), Positives = 119/262 (45%), Gaps = 13/262 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72 H +K GQNFL+D ++ I + G ++EIG G G LT ++ A Sbjct: 6 QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDS 65 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129 + +E D+ LK + LE+ DAL DF +RII NLPYNI Sbjct: 66 PLHAVELDRDLIGRLKARFGEL---LELHAGDALAFDFGSLARPGDQPSLRIIGNLPYNI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF+ ++ + P + Q EV ER+ A+ + + RLSV+ +R + D Sbjct: 123 SSPLLFHLMA---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKLID 179 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P PKV S ++ IPH L ++ AF +RRK LR +L Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPSVLGEVVTAAFSQRRKMLRNTLGGYRDL 239 Query: 248 NLLHQAGIETNLRAENLSIEDF 269 G + RAE++ ++++ Sbjct: 240 VDFDALGFDLARRAEDVGVDEY 261 >gi|119511388|ref|ZP_01630500.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414] gi|119463933|gb|EAW44858.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414] Length = 275 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 131/275 (47%), Gaps = 14/275 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I P+K Q++L L I +++ V+EIG G G LT+ LL L R ++ +E Sbjct: 2 IKPRKSFAQHWLKSEKALDAIIKAAECHQSDDRVLEIGPGTGILTRRLLPL-VRSLVAVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRL 133 D L + N L ++Q D L +D F N P +++AN+PYNI + Sbjct: 61 IDFDLCKQLAKQLGKKENFL-LLQGDFLTLDLPSHLAPFPNFQQPNKVVANIPYNITGPI 119 Query: 134 LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + + A+ P ++S+ LL QKEV +R+ A S +G LSV + + + Sbjct: 120 IEKLLGTIANPNPEPFDSIVLLVQKEVADRLYAHPGSRTFGALSVRVQYLADCEFICTVP 179 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN-- 248 F+P PKV S V+ P P + + + F +RK LR +L+ + + Sbjct: 180 AGAFYPPPKVDSAVVRLRPRTIETPALNPRKFENLVKLGFSAKRKMLRNNLQSVVERDRL 239 Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LL Q I +RAE+LS++ + R+ N LT N + Sbjct: 240 THLLEQLEINPQVRAEDLSVQQWVRLANQLTVNTE 274 >gi|303236809|ref|ZP_07323388.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN] gi|302482977|gb|EFL45993.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN] Length = 266 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 12/263 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DLNI K+IA++ I V+EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLNIAKRIADTVDECPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + R I+ +D L++ E F + N PY+I +++ F + Sbjct: 63 DAESVAYLNEKFPTL--RENILGEDFLRMQLENVFE-GRKFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ AQ + YG LSVL +F + +VF P Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAQPGNKTYGILSVLMQAWYNVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAG 254 PKV S VI + + + C + K++ + F +RRK LR SL+++ ++ Sbjct: 177 PKVKSAVISLTRNDVTELGCDEKLFKRVVKTVFNQRRKMLRVSLRQIFTTKPREGFYEQD 236 Query: 255 IETNLRAENLSIEDFCRITNILT 277 I R E L+I F ++TN++ Sbjct: 237 I-MTKRPEQLTIAQFVKLTNMVE 258 >gi|307701523|ref|ZP_07638541.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16] gi|307613315|gb|EFN92566.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16] Length = 303 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 137/299 (45%), Gaps = 28/299 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ + I P K GQNF+ D +++IA + V+EIG G G+ Sbjct: 1 MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVD----FEKFF 113 LT LL GAR VI +E D + L H +E + DAL +D Sbjct: 61 LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 P+ ++ANLPYN+ T +L + + P ++ Q EV +R+ A+ YG Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----------- 222 SV W A F +S VF P P V STV+ F + +ESL Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236 Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 + AFG RRKTLRQSL RL G LL +AGI+ LRAENL + DF + + Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295 >gi|95930212|ref|ZP_01312950.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684] gi|95133675|gb|EAT15336.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684] Length = 263 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 15/267 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K GQNFL D N++ ++ V+EIG G G LT ++ A + +IE Sbjct: 4 HRPRKRFGQNFLKDKNVIAATIAAAELTGDDHVLEIGPGQGALTDQMIGRVA-SLDIIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ + QH L + DAL++D+ + P +++ANLPYNI +++LF I Sbjct: 63 DRDLATFFQARPEQH---LTVHVGDALRLDWSAIL-LDPPYKLVANLPYNISSQILFKMI 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 E + L+FQKEVG+R+ A+ +S YG L+VL + + + P FFP Sbjct: 119 EHR---HLIERMVLMFQKEVGDRLRAEPSSKDYGALTVLCQLWFDVSRVALVPPTAFFPQ 175 Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENLLHQA-- 253 PKV S V+ F P ++ + +F +RRKTLR L L + Sbjct: 176 PKVMSEVLCFKQREQPRAQVDDPAFFTRVVKASFAQRRKTLRNCLVAAGFTAEQLEKVTA 235 Query: 254 --GIETNLRAENLSIEDFCRITNILTD 278 G++ R E +IE+F ++ + L + Sbjct: 236 ETGLDFGRRGETFTIEEFAQLAHGLQN 262 >gi|281200359|gb|EFA74579.1| Dimethyladenosine transferase [Polysphondylium pallidum PN500] Length = 410 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 22/298 (7%) Query: 1 MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M++ + ++ ++ Y + K+ + QNFLLDLNI KI +G + TVIE+GAGPG Sbjct: 1 MSIKLPNMPKIQDLIRLYGLSAKQQLSQNFLLDLNITDKICRVAGGFNDCTVIEVGAGPG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------- 112 LT+ LL GA+KVI +E D++F P LK + RL ++ D V+ + Sbjct: 61 GLTRSLLNSGAKKVIAVEMDRRFIPALKMLEDASDGRLSVVMGDMKDVNEAEILKQFGAV 120 Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITA 164 ++ S ++II NLP+N+GT L+ WI + L+FQKE+ +RI A Sbjct: 121 PTDWDKPSKVKIIGNLPFNVGTHLMLKWIRQIKPREGLFEFGRVPMILMFQKELADRIIA 180 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESL 222 +S YGRL+V+ + +++D+ VF P PKV ++V++ P + PI E L Sbjct: 181 PVSSHEYGRLAVMIQQECDSKVVYDLPGKVFVPPPKVDASVVYIEPKVKPIGDLKSKEYL 240 Query: 223 KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + +E F ++RKTL ++K L G E+L+ GI+ R +NL++E+ +I+N D Sbjct: 241 EYVCRELFTQKRKTLGNAIKCLGNGAESLIE--GIDPTKRPQNLTVEELVKISNRFND 296 >gi|196228205|ref|ZP_03127072.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428] gi|196227608|gb|EDY22111.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428] Length = 460 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 13/280 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K +++ L+ + P K +GQNFL D N+ + I +E+G G G LT+ Sbjct: 2 KLSTIQASLNQLGMQPTKSLGQNFLHDQNLAEWIVAQLDIQPEEAWVELGPGLGALTEFA 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L R ++ IEKD + L++ LEII DA + D + F PI+++ NL Sbjct: 62 LARSPRGLV-IEKDGRLAGFLRERFPA----LEIIHGDASEFDVRELF-ARGPIKVLGNL 115 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + +++LF + P +L QKE+ ER++A + YG L++L G R K Sbjct: 116 PYYVSSQILFAFTGE---PSPVSALIFTLQKELAERLSAGPWTKEYGALTLLVGRRWKVK 172 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSL-- 241 + + VF P+PKV S ++ P C E ++ ++ F +RRK LR++L Sbjct: 173 YLRTLPGSVFMPAPKVDSAIVLLTPRPAGEVPACDGELFTRLVKQGFAQRRKQLRKNLAG 232 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + L L G+E RAE LS+E + +TN +T + D Sbjct: 233 RNLDWPALCQHLGVEETTRAEELSLEQWIALTNFVTKSSD 272 >gi|62858143|ref|NP_001016494.1| dimethyladenosine transferase 1, mitochondrial [Xenopus (Silurana) tropicalis] gi|123893272|sp|Q28HM1|TFB1M_XENTR RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|89272950|emb|CAJ83142.1| transcription factor B1, mitochondrial [Xenopus (Silurana) tropicalis] gi|213624236|gb|AAI70821.1| transcription factor B1, mitochondrial [Xenopus (Silurana) tropicalis] gi|213624254|gb|AAI70849.1| transcription factor B1, mitochondrial [Xenopus (Silurana) tropicalis] Length = 346 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ + + +K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++V+EKD +F P LK ++ +++I+ D L ++ F + Sbjct: 74 LNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ AD PF +TL FQKEV ER+TA +S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ F I F P P+V V+HF P + P I + ++K+ + F Sbjct: 194 SRLSIMAQNLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVF 253 Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L E +L A ++ LR L++ F ++ N+ + D Sbjct: 254 QFRRKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312 >gi|227501495|ref|ZP_03931544.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725] gi|227077520|gb|EEI15483.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725] Length = 287 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 134/278 (48%), Gaps = 20/278 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + I P K +GQNFL D N +++I ++ V+E+G G G+LT L+ Sbjct: 14 EIRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPTDHVVEVGPGLGSLTLGLVET 73 Query: 69 GARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 + + +E D + L + + + RL +++ DAL+V E ++++P ++AN Sbjct: 74 -VQDLTAVEIDPRLAAQLPETVGERAEDYAKRLRVVEKDALRVTSE---DVAAPTALVAN 129 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L +++ P + ++ Q EV +R+ A+ S YG SV G+ Sbjct: 130 LPYNVAVPVLLHFLET---FPSIRRVLVMVQLEVAQRLAAEPGSKIYGVPSVKAGFYGAV 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P + S ++ P ++ + AF +RRKTLR + Sbjct: 187 SQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAA 246 Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 L G L AGI+ R E L++ DF R+ Sbjct: 247 LSGHYGSGAAAEEALRAAGIDPKQRGEKLAVADFVRLA 284 >gi|300743832|ref|ZP_07072852.1| dimethyladenosine transferase [Rothia dentocariosa M567] gi|300380193|gb|EFJ76756.1| dimethyladenosine transferase [Rothia dentocariosa M567] Length = 312 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + I P K +GQNF++D N +++I ++ D TV+EIG G G+LT L Sbjct: 30 PQEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVAAADITDDETVLEIGPGLGSLTLGLA 89 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 AR+V+ +E D L ++ + ++ DALKV +P ++ Sbjct: 90 D-AARQVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTE----LPHTPDALV 144 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P ++ Q EV +R+ A+ S YG SV W Sbjct: 145 ANLPYNVAVPVLLHLFAQ---FPSICHALVMVQDEVADRLAAKPGSKIYGVPSVKASWYA 201 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK+ S ++ F P+ + + + AF +RRKTLR +L Sbjct: 202 EVFKAGVIGKNVFWPAPKINSGLVGFRMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAAL 261 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E +L +AGI R E L I + RI Sbjct: 262 ASWAGSGARAEVILTEAGITPTERGEKLDIHGYIRIAQA 300 >gi|261880118|ref|ZP_06006545.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361] gi|270333202|gb|EFA43988.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361] Length = 269 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 130/264 (49%), Gaps = 12/264 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ PKK +GQ+FL DLNI K+IA++ I V+EIG G G LTQ L+ R+V +E Sbjct: 5 KVKPKKNLGQHFLTDLNIAKRIADTVDVCPEIPVLEIGPGMGVLTQYLVE-KPREVKAVE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + L + + R II D L+++ + F P + N PY+I +++ F Sbjct: 64 IDSESVTYLNEHFPKL--RDNIIAADFLRMNLNEVFG-GRPFVLTGNYPYDISSQIFFKM 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P T + Q+EV R+ + + YG LSVL +F +S VF P Sbjct: 121 LDYKDLIP---CCTGMIQREVALRMASAPGNKAYGILSVLIQAWYDVEYLFTVSEGVFNP 177 Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + C K++ + F +RRK LR SLK+L + + Sbjct: 178 PPKVKSAVIRMTRNAVVELGCDEALFKRVVKATFNQRRKMLRVSLKQLFSKETMPAPVFF 237 Query: 257 T----NLRAENLSIEDFCRITNIL 276 T +R E L I+ F +TN++ Sbjct: 238 THEMMTMRPEQLCIQQFVELTNMV 261 >gi|255327324|ref|ZP_05368398.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296] gi|255295604|gb|EET74947.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296] Length = 290 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 130/279 (46%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF++D N +++I ++ TV+E+G G G+LT +L Sbjct: 9 PAEIRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGIL 68 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A+ ++ +E D L + + ++++ DALKV +P ++ Sbjct: 69 D-AAKDMVAVEIDPPLAQQLPHTIEKFRPEKGGDIDVVLMDALKVTE----LPRTPDALV 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P ++ Q EV +R++A S YG SV W Sbjct: 124 ANLPYNVAVPVLLHLFAQ---FPSIRHALVMVQDEVADRLSATPGSKIYGVPSVKANWYA 180 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK+ S ++ F P+ + + I AF +RRKTLR +L Sbjct: 181 EVYKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAAL 240 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E +L AGI R E L I F RI Sbjct: 241 SSWAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAEA 279 >gi|224367389|ref|YP_002601552.1| KsgA [Desulfobacterium autotrophicum HRM2] gi|259494248|sp|C0QFJ2|RSMA_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|223690105|gb|ACN13388.1| KsgA [Desulfobacterium autotrophicum HRM2] Length = 284 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 94/274 (34%), Positives = 141/274 (51%), Gaps = 15/274 (5%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L +++ +K +GQNFL D N + I +G D V+EIG G G LT L AR Sbjct: 7 LLKKQQLMARKELGQNFLSDPNAARMIVTKAGISDQDRVLEIGPGLGALTIPAAKL-ARD 65 Query: 73 VIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 ++ +EKD + IL +++ + +E+I +D L D F I +I NLPYNI + Sbjct: 66 LVAVEKDTRLAGILMEELKRESIENVELINNDILHQDLNTLFR-GEKIIVIGNLPYNISS 124 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++LF + + L+FQKE+ ERI+A YGRLSV+ + + + D+ Sbjct: 125 QVLFMLVENR---HLIKRAVLMFQKELTERISASPGGRDYGRLSVVMQYCSTVKKIADLP 181 Query: 192 PHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------- 242 PH+FFP P V S V ++F L K+ + AF KRRKTLR SL Sbjct: 182 PHLFFPKPAVDSRVIEVNFFETTPYSGERERFLFKVIKAAFSKRRKTLRNSLAGGELDID 241 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L A I+ RAE LS+E++ R+++ L Sbjct: 242 TKVSAKILETAEIDPVRRAETLSVEEYSRLSDAL 275 >gi|227501188|ref|ZP_03931237.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098] gi|227216589|gb|EEI81993.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098] Length = 280 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 13/284 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +K I+ Y K +GQNFL+D N ++KI + + V+EIG G G Sbjct: 1 MKKLYSPKVVKDIIDFYNFRFSKSLGQNFLVDKNFVEKIVDRADV-KDTNVLEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 +T + A+KV+ IE D PI+++ + N ++I +D LK + EK Sbjct: 60 ITYEMAKS-AKKVVAIEIDSALLPIIEENMEEFDN-FKLIHEDILKANLEKIVEEEFSGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPY I T ++ +++ +T++ QKEV +R+ A + Y LSV Sbjct: 118 AFKVVSNLPYYITTPIIEKLVTSKLP---CTDMTIMVQKEVADRMLATEKDKEYSSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + T+A + ++ VF P PK+ STV+ L I F KRRKT+ Sbjct: 175 IKYFTEAEKITNVPKSVFMPQPKIDSTVLKLKLRKYRDDVDESKLFAIVHAGFNKRRKTI 234 Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277 SL + + GI LRAENLS++DF +T + Sbjct: 235 LNSLADAVDKEKLRLAFDKLGINEKLRAENLSLDDFIDLTKTIE 278 >gi|121611713|ref|YP_999520.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2] gi|166221713|sp|A1WS95|RSMA_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|121556353|gb|ABM60502.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2] Length = 284 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 22/276 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K +GQ+FL D I+ I ++ G ++EIG G LTQ L+ R + VIE Sbjct: 13 RHRPRKRLGQHFLTDQRIIDAIVQAIAPQPGQPMVEIGPGLAALTQPLVERLGR-LTVIE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--------ISSPIRIIANLPYNI 129 D+ L+ + L++IQ D L+VDF + +R++ NLPYNI Sbjct: 72 LDRDLALRLRRHA-----HLQVIQADVLRVDFTALAQTLRATPPTPPTRLRVVGNLPYNI 126 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF+ ++ + E + QK+V ER+ A+ YGRLSV+ WR + Sbjct: 127 STPILFHLLAHGSA---IEDQHFMLQKQVVERMVAKPGGSDYGRLSVMLQWRYAMEKLLH 183 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + P F P P+V S V+ +PH P L+++ Q AF +RRK L +L R + Sbjct: 184 VPPASFAPPPRVDSAVVRMLPHAQPAAVSRPMLEELVQLAFSQRRKLLHHTLGRWLDAHQ 243 Query: 250 LHQAGIETNLRAENLSIEDFCRIT----NILTDNQD 281 + +T RAE + ++++ + + D +D Sbjct: 244 -YAGRFDTRRRAEEVPVQEYLDLAREAHRWIADGKD 278 >gi|170289118|ref|YP_001739356.1| dimethyladenosine transferase [Thermotoga sp. RQ2] gi|226732634|sp|B1LBH5|RSMA_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170176621|gb|ACB09673.1| dimethyladenosine transferase [Thermotoga sp. RQ2] Length = 260 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 18/261 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + KK++GQ FL D I K+I +++ V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELTKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ PIL++ S++PN +E+ +D LK ++ ++N+PYNI L Sbjct: 66 IAYEIDESLAPILQERLSKYPN-VELRFEDFLK-----AKDVPEGAICVSNIPYNITGPL 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I ++ ++ QKEVGERI A+ YG LSV+ + +FD+S Sbjct: 120 MEKIIEWK-----FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V STV+ P+ E KK F K+RKTL+ +LK + Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPFLS--IFE-- 228 Query: 254 GIETNLRAENLSIEDFCRITN 274 G++ + RAE L++E+ + Sbjct: 229 GVDLSRRAEQLTVEEIVELYE 249 >gi|212550844|ref|YP_002309161.1| dimethyladenosine transferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549082|dbj|BAG83750.1| dimethyladenosine transferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 262 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 89/263 (33%), Positives = 130/263 (49%), Gaps = 13/263 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y+I PKK +GQ FL DL++ ++I E++ + V+E+G G G LTQ LL R + V+ Sbjct: 5 YRIFPKKSLGQYFLNDLSVAQRIVETTSFYPELPVLEVGPGTGVLTQFLLYSK-RNLTVV 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D++ LK Q NR II+ D LK+ F +I N PY+I +++ F Sbjct: 64 EIDERSVNFLKKRYPQLGNR--IIEADFLKLSLGDLF--PGYFYVIGNYPYSIASQIFFK 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + S + + QKEV ER+ + YG ++VL +F + P F Sbjct: 120 ILDYKDK---ILSCSGMLQKEVAERLVSSPGKKTYGIITVLLRTWYDVEYLFTVPPSCFN 176 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+PKV S V+ + + C ESL + I + AF +RRK LR SLK L I Sbjct: 177 PNPKVDSAVVRMVRNGRTNLGCDESLFRTIVKTAFNQRRKILRNSLKSLFRRE--TSISI 234 Query: 256 ET--NLRAENLSIEDFCRITNIL 276 R E LSIE+F + N+ Sbjct: 235 SPLFYKRPEQLSIEEFIELANLF 257 >gi|296271121|ref|YP_003653753.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833] gi|296093908|gb|ADG89860.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833] Length = 288 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 130/278 (46%), Gaps = 16/278 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF++D L++I + V+E+G G G+LT LL Sbjct: 12 PADVRALAELLNLRPTKRLGQNFVIDGGTLRRIVRLAQVTPEDVVLEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V+ +E D L +++ RL +++ DAL++ E +P ++ Sbjct: 72 PEAA-QVVAVEVDPVLAERLPVTVAEYAPEVAGRLRVVRADALRIGPEDL--GVAPDALV 128 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P ++ Q EV +R+TAQ S YG SV W Sbjct: 129 ANLPYNVAVPILLHLFA---VLPSLRRGLVMVQAEVADRLTAQPGSKLYGVPSVKIAWFA 185 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR--- 238 + + VF+P P V S ++ + P E + + AF +RRKTLR Sbjct: 186 EVRRAGSVGRSVFWPVPNVDSGLVALVRRDPPKTTASREEVFAVVDAAFAQRRKTLRAAL 245 Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + G E L AGI+ + R E L+IEDF RI Sbjct: 246 APWAGGAAGAERALRDAGIDPSARGERLTIEDFARIAE 283 >gi|30248888|ref|NP_840958.1| dimethyladenosine transferase [Nitrosomonas europaea ATCC 19718] gi|33516924|sp|Q82W15|RSMA_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|30138505|emb|CAD84795.1| ksgA; dimethyladenosine transferase [Nitrosomonas europaea ATCC 19718] Length = 257 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 136/265 (51%), Gaps = 12/265 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P+K GQ+FL+D +++ +I + G +IEIG G G LT+ LL + ++ VIE Sbjct: 2 RHTPRKRFGQHFLVDTSVIAEIIHIIHPVPGDRMIEIGPGLGALTKPLLNVL-DELQVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L +P +L I DALK DF + +RII NLPYNI T LLF+ Sbjct: 61 IDRDIVDYLSRT---YPGKLVIHNIDALKFDFSEL---GEGLRIIGNLPYNISTPLLFHL 114 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q EV ER+ A ++P YGRLS++ R + M + F P Sbjct: 115 ---SRFSSLITDMYFMLQLEVVERMVALPSTPDYGRLSIMLQNRFEMEQMLVVPAESFDP 171 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S ++ P P IP E L + AF +RRKTLR +L+ + + I Sbjct: 172 PPRVQSAIVCMRPKAEPTIPLKHERLFAELVSAAFSQRRKTLRNTLRHYLTADDFERLEI 231 Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280 ++ LRAENLS+ + I + +++ Sbjct: 232 DSGLRAENLSLAQYAAIVRQVYEDR 256 >gi|239941894|ref|ZP_04693831.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 15998] gi|239988357|ref|ZP_04709021.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 11379] gi|291445344|ref|ZP_06584734.1| dimethyladenosine transferase dimethyltransferase [Streptomyces roseosporus NRRL 15998] gi|291348291|gb|EFE75195.1| dimethyladenosine transferase dimethyltransferase [Streptomyces roseosporus NRRL 15998] Length = 291 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 12 PADIRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +VI +E D L + + +R ++ DA+ V +P ++ Sbjct: 72 E-AADRVIAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLVTE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQSEVADRLAARPGNKVYGVPSVKANWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 I +VF+P+P V S ++ + P+ + + AF +RRKTLR + Sbjct: 185 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPLATKASRAEVFAVVDAAFAQRRKTLRAA 244 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274 L E L AGI R E L++E+F I Sbjct: 245 LAGWAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283 >gi|255020167|ref|ZP_05292236.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756] gi|254970309|gb|EET27802.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756] Length = 282 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 98/262 (37%), Positives = 139/262 (53%), Gaps = 10/262 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIE 77 KK GQNFL+ I+++I + G ++EIG G G LT+ LL A VIE Sbjct: 8 QAKKRFGQNFLVQPAIVQRIVAAVGPGSSDALVEIGPGRGALTRALLAALAPAQRLRVIE 67 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFN 136 D+ PIL++++ P RLEI+ DALKVDF K + + +RI+ NLPYNI T LLF+ Sbjct: 68 LDRDLLPILRNLAP--PERLEILAADALKVDFLKIADTAGARLRIVGNLPYNISTPLLFH 125 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + Q+EV ERI A+ S YGRLSV+ M+F ++P F Sbjct: 126 LLGQAEA---ITDMHFMLQREVVERIVARPGSGTYGRLSVMLQAYCLVEMLFPVAPGNFH 182 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S + +P PI ++L + + AF +RRKTL + + Q Sbjct: 183 PVPKVDSAFLRLVPRHPTPIAPARQALFAEVVRLAFAQRRKTLANNFRSRLPAPAWEQLA 242 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I+ RAE LS++DF R+T L Sbjct: 243 IDPGRRAETLSVDDFFRLTEAL 264 >gi|188584688|ref|YP_001916233.1| dimethyladenosine transferase [Natranaerobius thermophilus JW/NM-WN-LF] gi|254807876|sp|B2A3L9|RSMA_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|179349375|gb|ACB83645.1| dimethyladenosine transferase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 302 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 30/299 (10%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + +L Y+I PKK +GQNFL+D NI++KI ++ + V+EIG G G LT+ + Sbjct: 5 SPKEVSQLLKRYEIHPKKSLGQNFLVDGNIIQKIIAAAELKEQDIVLEIGPGLGTLTRDM 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------- 115 ++ IE DQ+ IL++ N + II +DALK+D+++ + Sbjct: 65 SFY-VNEIFAIELDQRMIDILQETVGSCDN-VNIIHNDALKLDYQELISDFIEFSPAQLQ 122 Query: 116 -------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 ++ ++NLPY I + L+ + L+ Q+EV +R TA S Sbjct: 123 CKSKQINPKNLKAVSNLPYYIASPLVLKLAKEKVP---LSVMVLMVQREVADRFTASPGS 179 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKIT 226 +YG ++VL + +F++ VF+P P+V S V+ E K Sbjct: 180 KNYGAVTVLLDCFYEVEGVFNVPKTVFYPQPRVESQVVKLTKRSEAKINDDYQEDFIKFV 239 Query: 227 QEAFGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +AF RRKTL ++ + +L G +R E L++++F +I I+ + Sbjct: 240 NQAFNSRRKTLVNNILSIFTGEKSELSQILENNGFSAGIRGEQLTVDEFAQIFKIIYNR 298 >gi|121596391|ref|YP_988287.1| dimethyladenosine transferase [Acidovorax sp. JS42] gi|226729746|sp|A1WD86|RSMA_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120608471|gb|ABM44211.1| dimethyladenosine transferase [Acidovorax sp. JS42] Length = 253 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 12/259 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ R + V+E Sbjct: 2 KHIPRKRFGQHFLSDQGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135 D+ L+ +L++I+ D LKVDF + +S IR++ NLPYNI T +LF Sbjct: 61 LDRDLAARLRQH-----GQLDVIESDVLKVDFAQVAQALNASKIRVVGNLPYNISTPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + ++ + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLLAHVR---VIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLFVPPESF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S V+ +PH P + L+++ Q AF +RRK LR +L R Sbjct: 173 DPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRWLEARQFAGT-F 231 Query: 256 ETNLRAENLSIEDFCRITN 274 +T RAE + + ++ + Sbjct: 232 DTQRRAEEVPVSEYVALAQ 250 >gi|283458615|ref|YP_003363250.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18] gi|283134665|dbj|BAI65430.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18] Length = 290 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF++D N +++I ++ TV+E+G G G+LT +L Sbjct: 9 PAEIRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGIL 68 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A+ ++ +E D L + + + ++++ DALKV +P ++ Sbjct: 69 D-AAKDMVAVEIDPPLAQQLPHTIEKFRPEKADDIDVVLMDALKVTE----LPRTPDALV 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P ++ Q EV +R++A S YG SV W Sbjct: 124 ANLPYNVAVPVLLHLFAQ---FPSIRHALVMVQDEVADRLSATPGSKIYGVPSVKANWYA 180 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK+ S ++ F P+ + + I AF +RRKTLR +L Sbjct: 181 EVYKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAAL 240 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E +L AGI R E L I F RI Sbjct: 241 SSWAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAEA 279 >gi|89898507|ref|YP_515617.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56] gi|119365014|sp|Q253R6|RSMA_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89331879|dbj|BAE81472.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56] Length = 284 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 ++ ++ + + + PKK + QNFL+D NIL+KI S G V+EIG G G Sbjct: 7 LSRSSPDQLTRFLAQVHGH-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGA 65 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT++L+ GA V+ +EKD F LK + P LEI + + R Sbjct: 66 LTEVLVNQGAH-VVALEKDPMFEETLKQL----PIDLEITDACKYPLSQLQEKGWQGKGR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T LL P W+++T++ Q EV RITAQ YG L++ + Sbjct: 121 VVANLPYHITTPLLTKLFLE--VPNQWKTITVMMQDEVARRITAQPGGKEYGSLTIFLQF 178 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLR 238 F +S FFP P+V+S V+H P+ L + +T+ AFG+RRK L Sbjct: 179 FADVRYAFKVSSGCFFPKPQVSSAVVHMTVKDTFPLEESLHKKFFSLTRAAFGQRRKLLA 238 Query: 239 QSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L ++L L+Q R E LS++++ ++ +L+ Sbjct: 239 NALKNLYPKDLVFSALNQLNFSEKTRPETLSLDEYLKLFQLLS 281 >gi|254388805|ref|ZP_05004037.1| dimethyladenosine transferase dimethyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294813100|ref|ZP_06771743.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC 27064] gi|326441601|ref|ZP_08216335.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Streptomyces clavuligerus ATCC 27064] gi|197702524|gb|EDY48336.1| dimethyladenosine transferase dimethyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294325699|gb|EFG07342.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC 27064] Length = 310 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 17/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 37 PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRADDVVVEVGPGLGSLTLALL 96 Query: 67 TLGARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122 A V+ +E D L I ++ P R ++ DA+ V + P ++ Sbjct: 97 E-AADSVVAVEIDDVLAGALPATILARMPERAPRFSLVHSDAMLV---RELPGPPPTALV 152 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A + YG SV W Sbjct: 153 ANLPYNVAVPVLLHMLDR---FPTIERTLVMVQAEVADRLAAAPGNKVYGVPSVKANWYA 209 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241 I +VF+P+P V S ++ + P ++ + + AF +RRKTLR +L Sbjct: 210 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRDPPRTTATKAQVFAVVDAAFAQRRKTLRAAL 269 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 G L AGI R E+L++E+F RI Sbjct: 270 AGWAGSPAAAEAALVAAGISPQARGESLTVEEFARIAEA 308 >gi|306835652|ref|ZP_07468661.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726] gi|304568496|gb|EFM44052.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726] Length = 287 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 20/278 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + I P K +GQNFL D N +++I ++ V+E+G G G+LT L+ Sbjct: 14 EIRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPADRVVEVGPGLGSLTLGLVET 73 Query: 69 GARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 + +E D + L + ++ + RL +++ DAL+V E ++++P ++AN Sbjct: 74 -VEDLTAVEIDPRLAAQLPETVGERAADYAERLRVVEKDALRVTSE---DVTAPTALVAN 129 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L +++ P + ++ Q EV +R+ A S YG SV G+ Sbjct: 130 LPYNVAVPVLLHFLET---FPSIRRVLVMVQLEVAQRLAAAPGSKIYGVPSVKAGFYGTV 186 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P + S ++ P ++ + AF +RRKTLR + Sbjct: 187 SQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAA 246 Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 L G L AGI+ R E L++ DF R+ Sbjct: 247 LSGHYGSGAAAEEALRAAGIDPQQRGEKLAVADFVRLA 284 >gi|281425444|ref|ZP_06256357.1| dimethyladenosine transferase [Prevotella oris F0302] gi|281400437|gb|EFB31268.1| dimethyladenosine transferase [Prevotella oris F0302] Length = 265 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 12/264 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK +GQ+FL DLNI ++IA++ + I V+EIG G G LTQ L+T R+V +E Sbjct: 4 VKAKKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + + R II +D L++D K F P + N PY+I +++ F + Sbjct: 63 DKESVAFLHENYPEL--RDNIIGEDFLRMDLCKVFE-RRPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ ++ + YG LSVL +F + VF P Sbjct: 120 DYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C K++ + F +RRK LR S+K++ + A T Sbjct: 177 PKVKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLT 236 Query: 258 ----NLRAENLSIEDFCRITNILT 277 R E LS++ F +TN++ Sbjct: 237 LDVMTKRPEQLSVQQFVELTNLVE 260 >gi|37521560|ref|NP_924937.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC 7421] gi|62900565|sp|Q7NJ41|RSMA_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|35212558|dbj|BAC89932.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC 7421] Length = 272 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 129/263 (49%), Gaps = 14/263 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ++L D +L +I ++G G V+EIG G G+LT LL V+ +E D++ Sbjct: 5 KRFGQHWLNDGAVLDRIVAAAGLACGDRVLEIGPGLGSLTARLLRQVP--VVAVEIDRRA 62 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ R +++ D L+ + N+ ++AN+PYNI +L + Sbjct: 63 VAQLQRQFGG-DKRFVLVEGDILREALPEPANV-----VVANIPYNISGPILAKLTGSLA 116 Query: 143 WP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + ++ LL QKE+G+RI A S YG LSV + + ++F++ H F P PKV Sbjct: 117 QPIRRFRTIVLLVQKELGQRIAAPPGSRTYGALSVRLQYLAECELLFEVPSHCFTPPPKV 176 Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256 S VI P + + L + AF RRK L+ LK L A I Sbjct: 177 DSAVIRLTPRPFALQADDPAHLDALVTRAFATRRKMLKNCLKGWVETEKLLAAFASLDIS 236 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 + RAE+LS+E F +++N L ++ Sbjct: 237 PDARAEDLSVERFVQLSNRLAES 259 >gi|332877578|ref|ZP_08445322.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684427|gb|EGJ57280.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 258 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 99/260 (38%), Positives = 137/260 (52%), Gaps = 10/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL DLNI +KIA++ + V+EIGAG G LTQ LL +V V+E Sbjct: 4 VKAKKHLGQHFLKDLNIAQKIADTLSLANYKKVVEIGAGMGVLTQFLLK-KDTEVYVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L+ + + II DD LK D F P II N PYNI T+++F + Sbjct: 63 DKESVAYLEAHYPELRGK--IIADDFLKYDIAGFL--REPFAIIGNFPYNISTQIVFKLL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + + FQKEV ERI ++ S YG LSVL +AT +F +S VF P Sbjct: 119 ELRDYVPEFSGM---FQKEVAERICEREGSKTYGILSVLVQAFYEATYLFTVSEGVFNPP 175 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + + C I + AF +RRKTLR SLK L L I Sbjct: 176 PKVKSGVLRLVRKSDYHLDCDEALFFTIVKTAFNQRRKTLRNSLKPLLTNEFLKNNSI-F 234 Query: 258 NLRAENLSIEDFCRITNILT 277 + R E L +DF IT ++ Sbjct: 235 DKRPEQLPWQDFVFITKEIS 254 >gi|238755736|ref|ZP_04617069.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473] gi|238706028|gb|EEP98412.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473] Length = 236 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 G V+EIG G G LT+ + + VIE D+ L Q ++L I Q DA+K Sbjct: 2 PGEAVVEIGPGLGALTEPVAAR-MDHMTVIELDRDLAARLA-CHPQLKDKLTIHQQDAMK 59 Query: 107 VDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 V+F + P+R+ NLPYNI T L+F+ S + + QKEV R+ A Sbjct: 60 VNFAELAEQSGKPLRVFGNLPYNISTPLMFHLFSYTQA---ILDMHFMLQKEVVNRLVAG 116 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLK 223 NS YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + L Sbjct: 117 PNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHINMPNPVGDVRMLS 176 Query: 224 KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +IT +AF +RRKT+R SL L L + G+ LRAEN+S+ +C++ N L+ Sbjct: 177 RITTQAFNQRRKTVRNSLGDLFTPEQLTELGVNPTLRAENISVAQYCKLANWLS 230 >gi|54026877|ref|YP_121119.1| dimethyladenosine transferase [Nocardia farcinica IFM 10152] gi|62900491|sp|Q5YPY6|RSMA_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54018385|dbj|BAD59755.1| putative ribosomal RNA small subunit dimethyltransferase [Nocardia farcinica IFM 10152] Length = 293 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I ++G TV+E+G G G+LT LL Sbjct: 17 PAEVRALAERFGVRPTKQLGQNFVHDANTVRRIVTAAGVGRADTVLEVGPGLGSLTLALL 76 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + V+ +E D L D + RL +++DDAL+V +SP ++ Sbjct: 77 DV-VDSVVAVEIDPVLAEHLPRTVADRAPALAGRLRVVRDDALRVRAADL--PASPTALV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ P + ++ Q EV +R+ A+ S YG SV G+ Sbjct: 134 ANLPYNVAVPVLLHLLAE---LPGLRTALVMVQAEVADRLAAEPGSRVYGVPSVKAGFFG 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI---TQEAFGKRRKTLR 238 + VF+P P+V S ++ ++ P P + +++ AF +RRKTLR Sbjct: 191 TVRRAGAVGTQVFWPVPRVESGLVRVERYVEPPWPMDEQHRRRVFEIIDAAFAQRRKTLR 250 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +L G E L AGI+ R E L + R+ Sbjct: 251 AALAGWAGSPAEAERRLLAAGIDPTARGETLDTAAYVRLA 290 >gi|282931722|ref|ZP_06337210.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] gi|297205158|ref|ZP_06922554.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16] gi|281304165|gb|EFA96279.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] gi|297149736|gb|EFH30033.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16] Length = 293 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y KK +GQNFL+ LN + I +++ V+EIG G G+LT+ +L G Sbjct: 13 TKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRG 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQ------HPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV+ E DQ IL + Q + +++ D LK DF++ FF+++ PI Sbjct: 73 A-KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPI 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D +ESLTL+ QKEV ER+ A + YG L++ Sbjct: 132 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLR 238 + M + F P PKV S V+ P + E+ + + + F +RRKTL Sbjct: 189 TQMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L +NLL + R E L+I F + L Sbjct: 249 NNLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKALK 292 >gi|66808105|ref|XP_637775.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4] gi|60466213|gb|EAL64275.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4] Length = 485 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 26/304 (8%) Query: 1 MTMNN------KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54 MT+ N ++ I+ + + K+ + QNFL+D NI KI + SG D TVIE+ Sbjct: 1 MTIKNLTTSLPPMPKIQEIIRIFGLSAKQQLSQNFLIDKNITDKICKKSGGFDDCTVIEV 60 Query: 55 GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-- 112 GAGPG LT+ LLT GA+KVI +E D +F+P LK + R+ +I + + VD K Sbjct: 61 GAGPGGLTRSLLTSGAKKVIAVEMDPRFYPALKMLEESSGGRMSLIMANMMDVDEAKLLR 120 Query: 113 --------FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVG 159 + S ++II NLP+N+GT L+ WI + L+FQKE+ Sbjct: 121 DAGAETTNWKDKSKVKIIGNLPFNVGTHLMLKWIRQIAPRQGLYEFGRVPMYLMFQKELS 180 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP----I 215 +RI AQ S Y RLSV+ + ++++ I F P PKV ++V+ P ++P Sbjct: 181 DRICAQVGSEEYSRLSVMVQQMCQPSIVYSIPGTAFVPPPKVDASVVAIEPRISPLGDEP 240 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-NLLHQAGIETNLRAENLSIEDFCRITN 274 + + +E F +RRK L ++K LG + L I+ +R +NL IE F +ITN Sbjct: 241 VKDHHYFEFVCRELFSQRRKKLSNTIKTLGKDAESLLGDDIDPKIRTQNLQIEQFVKITN 300 Query: 275 ILTD 278 + Sbjct: 301 RYIE 304 >gi|118602555|ref|YP_903770.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567494|gb|ABL02299.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 250 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 132/255 (51%), Gaps = 13/255 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQNFL+D I+ +I + ++EIG G G +T LL ++ VIE Sbjct: 2 HKACKRFGQNFLVDHRIIDRIIATIAPKRDDNLLEIGPGQGAITLPLLDY-VDQLNVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ IL+ + + L + Q D LK D + PIR+I NLPYNI + +LF + Sbjct: 61 DRNLISILESLKH---SNLIVHQGDVLKFD---LNVVPIPIRVIGNLPYNISSHVLFYLL 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +T + QKEV ERI A S YGRLSV+ M+F + P F P+ Sbjct: 115 KNLNK---IKDMTFMLQKEVVERIAANNGSKIYGRLSVMMQAFFDVQMIFIVPPESFNPA 171 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 P+V S V+H P P ++ L+K+ + AF +RRKTL+ LK + + Q I+ + Sbjct: 172 PRVESAVVHLKPLTQPKTKDIKILEKVVKLAFSQRRKTLKNCLKSILTQ---KQTNIDLS 228 Query: 259 LRAENLSIEDFCRIT 273 RAE L+I++F +T Sbjct: 229 QRAEMLTIDNFITLT 243 >gi|222112630|ref|YP_002554894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY] gi|254807865|sp|B9MIF6|RSMA_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221732074|gb|ACM34894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY] Length = 253 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ R + V+E Sbjct: 2 KHIPRKRFGQHFLSDSGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135 D+ L+ +L++I+ D LKVDF + + IR++ NLPYNI T +LF Sbjct: 61 LDRDLAARLRQH-----GQLDVIESDVLKVDFAQVAQALNAPKIRVVGNLPYNISTPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + ++ + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLLAHVR---VIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLFVPPESF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S V+ +PH P + L+++ Q AF +RRK LR +L R Sbjct: 173 DPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRWLEARQFAGT-F 231 Query: 256 ETNLRAENLSIEDFCRITNILT 277 +T RAE + + ++ + + Sbjct: 232 DTQRRAEEVPVSEYVALAQKCS 253 >gi|325106005|ref|YP_004275659.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145] gi|324974853|gb|ADY53837.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145] Length = 283 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 133/266 (50%), Gaps = 10/266 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D NI +KI +S + V+E+G G G L+ LL + +I+ Sbjct: 23 VKAKKHLGQHFLTDKNIAQKIVDSLIHTDKYKKVLEVGPGMGVLSDFLLQKTDYETYLID 82 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + F L ++L I D L+++F F P II N PYNI +++LF Sbjct: 83 IDTESFEFLHKQYPNLGDKL--INADFLQLNFRDIFL--EPFAIIGNFPYNISSQILFKV 138 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P + +FQKEV ER A+ S YG LSV K +F + VF P Sbjct: 139 LENRNHVP---EVVGMFQKEVAERCVAKAGSKEYGILSVFLQAYYKCEYLFTVKAGVFNP 195 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + C + +I + F +RRKTL +L + + L + + Sbjct: 196 PPKVLSAVIRLTRNETETLECNEKLFWQIVKAGFNQRRKTLSNALSGIIKKELQGEEEVW 255 Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282 LRAE L+++DF +TN++ N+ + Sbjct: 256 -TLRAERLTVKDFVDLTNLIEQNKSL 280 >gi|299531916|ref|ZP_07045316.1| dimethyladenosine transferase [Comamonas testosteroni S44] gi|298720091|gb|EFI61048.1| dimethyladenosine transferase [Comamonas testosteroni S44] Length = 253 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 12/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D I+ I ++ G ++EIG G L+Q L+ K+ VIE Sbjct: 2 KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLG-KLTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+ L+ + L++++ D LKVDF + +R++ NLPYNI + +LF Sbjct: 61 LDRDLAARLRLR-----DDLDVVESDVLKVDFRALAARLGVTKLRVVGNLPYNISSPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLLEQ---VDVVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGSF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S V+ IP P + L+++ Q AF +RRK LR +L + Sbjct: 173 NPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEAKGF-AGEF 231 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + RAE + + +F + L+ Sbjct: 232 DLQRRAEEVPVAEFEALAAQLS 253 >gi|239947018|ref|ZP_04698771.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921294|gb|EER21318.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 303 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 153/305 (50%), Gaps = 40/305 (13%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 63 KKPESLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKER 121 Query: 114 -------------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 +I + II+NLPY+IGT L+ W+ ++TL+ Sbjct: 122 EAKPITNRRATSNDVGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LINNMTLML 178 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 QKEV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP Sbjct: 179 QKEVVERICAMPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENP 238 Query: 215 IPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCR 271 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ R Sbjct: 239 PSIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLTPQDYLR 298 Query: 272 ITNIL 276 I IL Sbjct: 299 IAEIL 303 >gi|146329356|ref|YP_001209814.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A] gi|226730735|sp|A5EY68|RSMA_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146232826|gb|ABQ13804.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A] Length = 263 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 9/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I K +GQ+FL D I+ ++ + ++EIG G G LT +L ++ +E Sbjct: 4 IKAVKRLGQHFLRDEGIITQLLAAIDPKPQQKILEIGPGLGALTLPVLERC-HELYAVEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + ++ L +I+ D L + F + +PIRII NLPYN+ + +LF+ + Sbjct: 63 DHRVLQPLSEKAAAV-GILHLIERDILNIHFAEVA--PAPIRIIGNLPYNLSSPILFHCV 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV +RITA ++P YGRLSV+ + +FD+ P F P Sbjct: 120 AQRS---DIVDMHFMLQKEVVDRITAPVDTPAYGRLSVMIQLYCQVEALFDVPPEAFAPP 176 Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ IP + + + + AF +RRK LR+SL L ++ Sbjct: 177 PKVNSAVVRLIPQTQLTWNIESIAHFECVVRSAFSQRRKMLRKSLAAYFEPKELMALDVD 236 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE + F R+ N L Sbjct: 237 PTARAETIDGASFARLANALY 257 >gi|317484454|ref|ZP_07943366.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6] gi|316924278|gb|EFV45452.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6] Length = 268 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 126/261 (48%), Gaps = 11/261 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQ+FL D +I + V+EIG GPG +T ++ G + +IEKD Sbjct: 10 RAKKSLGQHFLKDAKTSARIVDLLRIGPEDRVLEIGPGPGAITGIIHERGPAEFRLIEKD 69 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + ++ P ++++ DAL +E P +II+NLPYN+G+ L+++ +S Sbjct: 70 SYWAAHHAELERPAPA-VQVLNADALAFPWESL---EGPWKIISNLPYNVGSPLMWDIVS 125 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + QKEV ER+ A+ + YG LSV + F + P F P P Sbjct: 126 RT---PDLTRAVFMVQKEVAERLYAKPGTKDYGALSVWIQSYVRVEWGFVVGPGAFNPPP 182 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255 KV S V+ FIP P ++L I + F RRK L+ L+R G ++ L + GI Sbjct: 183 KVDSAVVTFIPLPRERHPADPKALSSILKLCFQLRRKQLQSILRRAGRDDTAAALERLGI 242 Query: 256 ETNLRAENLSIEDFCRITNIL 276 R E L+ E F ++ I Sbjct: 243 APEARPETLTPEQFQQLAGIF 263 >gi|212278083|gb|ACJ23056.1| KsgA [Neisseria gonorrhoeae] Length = 265 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 17/269 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGER------ITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + + QKEV ER + A S YGRL V+ + ++ D+ P Sbjct: 118 EVAD---DVADMHFMLQKEVVERKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPP 174 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F P+PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L Sbjct: 175 ESFDPAPKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDL 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 GI RAE+++ E + ++N L D Sbjct: 235 QAVGISPQDRAEHIAPEKYVALSNYLADK 263 >gi|256820807|ref|YP_003142086.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271] gi|256582390|gb|ACU93525.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271] Length = 257 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 95/262 (36%), Positives = 137/262 (52%), Gaps = 10/262 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL DLNI +KIA++ + V+EIGAG G LTQ LL G V ++E Sbjct: 4 VKAKKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKGVD-VHIVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L+ + II DD LK D + + P II N PYNI T+++F + Sbjct: 63 DKESVDYLEANYPALRGK--IIADDFLKYDVAGYL--AEPFAIIGNFPYNISTQIVFKLL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + FQKEV ERI + S YG LSVL + + +F +S VF P Sbjct: 119 ELREYVSEFSGM---FQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPP 175 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C + + AF +RRKTLR SLK L + L Q I Sbjct: 176 PKVKSGVIRLVRKAHFHLDCDERLFFTVVKTAFNQRRKTLRNSLKPLLTDENLKQDPI-F 234 Query: 258 NLRAENLSIEDFCRITNILTDN 279 + R E L ++F IT +++ Sbjct: 235 DKRPEQLPWQEFVFITKKISNQ 256 >gi|315223958|ref|ZP_07865802.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287] gi|314946062|gb|EFS98067.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287] Length = 257 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 10/262 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL DLNI +KIA++ + V+EIGAG G LTQ LL V ++E Sbjct: 4 VKAKKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKDVD-VHIVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L+ + II +D LK D + + P II N PYNI T+++F + Sbjct: 63 DKESVAYLEANYPALRGK--IIANDFLKYDVAGYL--AEPFAIIGNFPYNISTQIVFKLL 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + + FQKEV ERI + S YG LSVL + + +F +S VF P Sbjct: 119 ELREYVPEFSGM---FQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPP 175 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C + + AF +RRKTLR SLK L + L Q I Sbjct: 176 PKVKSGVIRLVRKTDFHLDCDEGLFFTVVKTAFNQRRKTLRNSLKSLLTDENLKQDPI-F 234 Query: 258 NLRAENLSIEDFCRITNILTDN 279 + R E L ++F IT +++ Sbjct: 235 DKRPEQLPWQEFVFITKKISNQ 256 >gi|220908859|ref|YP_002484170.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425] gi|219865470|gb|ACL45809.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425] Length = 284 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 13/275 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI P+K GQ++L L++I ++ TV+EIG G G LT+ LL + ++ IE Sbjct: 3 KIRPRKQFGQHWLRSDRALQRILAAAELSVEDTVLEIGPGRGVLTRSLLDR-VKSLLAIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRL 133 D+ + L+ + N L ++Q + L+++ EK I P +++AN+PYNI + Sbjct: 62 IDRDLYSFLQSEFAGK-NNLRLVQGNFLELELEKLLTEETGIGFPNKVVANIPYNITGPI 120 Query: 134 LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L + A P +E + LL QKEV +R+ A NS YG LSV + + ++ + Sbjct: 121 LEKLLGTIAQPNPQPFELIVLLVQKEVADRLAAHPNSSAYGGLSVRVQYLAQCELICPVP 180 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN-- 248 F+P PKV S VI P+ P L ++ + F RRK LR +LK + + Sbjct: 181 AGAFYPPPKVDSAVIRLRPYHPPTGATHPAFLDQLVRMGFATRRKMLRNNLKSVVERDRL 240 Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LL Q + RAE+LS+ + ++N+L + Sbjct: 241 SELLQQLDLNPQARAEDLSLSQWINLSNLLEAERS 275 >gi|212278081|gb|ACJ23055.1| truncated KsgA [Neisseria gonorrhoeae] Length = 249 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 11/251 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A S YGRL V+ + ++ D+ P F P+ Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234 Query: 257 TNLRAENLSIE 267 RAE+++ E Sbjct: 235 PQDRAEHIAPE 245 >gi|157964820|ref|YP_001499644.1| dimethyladenosine transferase [Rickettsia massiliae MTU5] gi|157844596|gb|ABV85097.1| Dimethyladenosine transferase [Rickettsia massiliae MTU5] Length = 332 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 154/312 (49%), Gaps = 40/312 (12%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT S+ + +++ P K GQNF+ D ++ KI +S + V+EIG G G Sbjct: 25 MTYPTMLPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGG 84 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------- 113 LT+ +L + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 85 LTRSILQKNPESLTVIETDERCLPLLNEIKECYPN-LNIIKQDALKINLTDLSYDIVNSV 143 Query: 114 --------------------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 +I + II+NLPY+IGT L+ W+ Sbjct: 144 GFAYKKLEVKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LI 200 Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207 S+TL+ QKEV ERI A ++ YGRLSV+ K FD+ P F+P PKV S ++ Sbjct: 201 TSMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVEKCFDVEPTAFYPPPKVYSAIVK 260 Query: 208 FIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENL 264 IP NP + +++IT+ AF RRK ++ SLK L +L Q I N RAENL Sbjct: 261 LIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENL 320 Query: 265 SIEDFCRITNIL 276 + +D+ RI IL Sbjct: 321 APQDYLRIAEIL 332 >gi|256851971|ref|ZP_05557358.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN] gi|260661459|ref|ZP_05862372.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN] gi|256615383|gb|EEU20573.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN] gi|260547914|gb|EEX23891.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN] Length = 297 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y KK +GQNFL+ LN + I +++ V+EIG G G+LT+ +L G Sbjct: 17 TKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRG 76 Query: 70 ARKVIVIEKDQQFFPILKDISSQ------HPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV+ E DQ IL + Q + +++ D LK DF++ FF+++ PI Sbjct: 77 A-KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPI 135 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D +ESLTL+ QKEV ER+ A + YG L++ Sbjct: 136 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 192 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLR 238 + M + F P PKV S V+ P + E+ + + + F +RRKTL Sbjct: 193 TQMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLN 252 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L +NLL + R E L+I F + L Sbjct: 253 NNLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKALK 296 >gi|312871246|ref|ZP_07731344.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a] gi|312872808|ref|ZP_07732873.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1] gi|311091850|gb|EFQ50229.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1] gi|311093260|gb|EFQ51606.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a] Length = 295 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNRPISVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|299141585|ref|ZP_07034721.1| dimethyladenosine transferase [Prevotella oris C735] gi|298576921|gb|EFI48791.1| dimethyladenosine transferase [Prevotella oris C735] Length = 265 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 12/264 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK +GQ+FL DLNI ++IA++ + I V+EIG G G LTQ L+T R+V +E Sbjct: 4 VKAKKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + + R II +D L++D K F P + N PY+I +++ F + Sbjct: 63 DKESVAFLHENYPEL--RDNIIGEDFLRIDLYKVFE-RRPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ ++ + YG LSVL +F + VF P Sbjct: 120 DYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C K++ + F +RRK LR S+K++ + A T Sbjct: 177 PKVKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLT 236 Query: 258 ----NLRAENLSIEDFCRITNILT 277 R E LS++ F +TN++ Sbjct: 237 LDVMTKRPEQLSVQQFVELTNLVE 260 >gi|114778951|ref|ZP_01453742.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1] gi|114550823|gb|EAU53391.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1] Length = 265 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 127/277 (45%), Gaps = 12/277 (4%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N + ++ ++ KK +GQ+FL+D +++IA + +IEIG GPG +T Sbjct: 1 MTNDQTNTQSANQNH---AKKALGQHFLMDQQAIRRIAGAIDDGAD--IIEIGPGPGAIT 55 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 ++LL A + VIE D +F + + HP L ++ D +KV + P I Sbjct: 56 EVLLAR-ASHLTVIEMDDRFAARWQQHARSHP-TLSVVHGDVMKVLEATVAD-KQPQWIA 112 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYN+ L P + L++Q+EV ERI A S YG LSVL Sbjct: 113 GNLPYNLSGPLTATL----AGIPLSGGMVLMYQREVAERICAGPGSKTYGGLSVLVRHFY 168 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + P F P PKV S V+ PH PC L++ ++ F RRKT+ + + Sbjct: 169 DVKRLLTLPPGAFSPPPKVHSAVVVLTPHHRTPPCDYSILQQTVRKGFAHRRKTIFNNFR 228 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + I LR E L + R+ L +N Sbjct: 229 GVLDADAFTAIDINPGLRPEQLDYAAWARLALRLQNN 265 >gi|309390027|gb|ADO77907.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228] Length = 297 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 154/299 (51%), Gaps = 24/299 (8%) Query: 3 MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M NK + K IL+ Y + KK +GQNFL+D NI++ I+ S+ +IEIG G G Sbjct: 1 MENKIATPSVTKKILNKYNLNLKKSLGQNFLVDQNIIEIISSSAAIKGDEFIIEIGPGIG 60 Query: 60 NLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 +LTQ +L L ++ +EKD +L DI ++ N+L +I DALK+D+ + +P Sbjct: 61 SLTQSILNKLKTGNLLAVEKDAAMVEVLNDIFAE-ENKLTLINQDALKIDWPEILEKYNP 119 Query: 119 ----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 ++++ANLPY + T ++ + ++ E++ + QKEVGERI A + +G L Sbjct: 120 EKKKVKLLANLPYYVTTPIIMGVLESEI---ELENMVFMVQKEVGERICAGPETKKFGSL 176 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAF 230 SV + + ++ + +VF P P V S ++ P+ I + +I + F Sbjct: 177 SVAVQYYMQPEIIHQVPANVFIPQPNVDSVIVGLAPYPENIYQKEVLNQDFFFQIVKSIF 236 Query: 231 GKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 +RRKTLR SL R NL L+ GI R E LSI + I+N + ++ Sbjct: 237 QQRRKTLRNSLSRSAIINLDRDLVTQALNDEGIGIKKRGEKLSILEMISISNRIYKMRE 295 >gi|308234963|ref|ZP_07665700.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14018] gi|311113998|ref|YP_003985219.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019] gi|310945492|gb|ADP38196.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019] Length = 296 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 12/277 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ I + I P K GQNF++D +KKI +S V+E+G G G+LT +L Sbjct: 21 AADIRRIAAEEGITPTKKFGQNFVIDPGTVKKIVTASKINSNDFVMEVGPGLGSLTLAIL 80 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH-PN---RLEIIQDDALKVDFEKFFNI--SSPIR 120 GA + +E D L + PN R +I DAL+++ + N+ + Sbjct: 81 QAGAN-LTAVEIDPPLAKRLPSTVKEFMPNALERFNVILKDALELNAQDVPNLANAQHFT 139 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ + + + QKEV +R+ AQ + YG SV W Sbjct: 140 LVANLPYNVATPIILTLLEKFNNLTSFLVMV---QKEVADRLCAQPGTKTYGTPSVKLAW 196 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLR 238 ++ I +VF+P+P V S +++F + E + KI AF +RRKTL Sbjct: 197 YGESQKAGLIGRNVFWPAPNVDSALVYFERNNEIREDEQEREKVFKIIDAAFQQRRKTLH 256 Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 +LK + AGI+ R E L+ +F + Sbjct: 257 SALKGIISNESYDIAGIDPTRRGETLTCAEFLALYKA 293 >gi|193212495|ref|YP_001998448.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327] gi|226729768|sp|B3QMU5|RSMA_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|193085972|gb|ACF11248.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327] Length = 274 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 129/263 (49%), Gaps = 11/263 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H I KK +GQNFLLD NI +KI SG +G V+EIG G G L+ +L + Sbjct: 7 KHTHIAAKKKLGQNFLLDKNIPRKIVRESGIKEGDLVLEIGPGFGALSTAILEVMP-SFT 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 IEKD + +++ +HP + +I+ D LKV E S + ++ N+PY+I + +L Sbjct: 66 AIEKDPELARFIRE---EHPE-INLIEGDFLKVPLEPLTG-SGKLAVLGNIPYSITSPIL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + ES TL+ Q EV +RITA + YG L+V +F + V Sbjct: 121 FRLLDNR---HLIESATLMMQHEVAQRITAVPGTKEYGILAVQMQAFCDVKYLFKVGRAV 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P+V S VI +P E + + AF +RRKTL +LK + + Sbjct: 178 FKPRPEVDSAVIRLVPKAQNPVEDSEGFRTFVRRAFHQRRKTLWNNLKEYYNTSEVPAET 237 Query: 255 IETNLRAENLSIEDFCRITNILT 277 + LRAE L++E + LT Sbjct: 238 L--KLRAEALTVEGLIELFEKLT 258 >gi|264680839|ref|YP_003280749.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2] gi|262211355|gb|ACY35453.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2] Length = 253 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 12/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D I+ I ++ G ++EIG G L+Q L+ K+ VIE Sbjct: 2 KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLG-KLTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+ L+ + L++++ D LKVDF + +R++ NLPYNI + +LF Sbjct: 61 LDRDLAARLRLR-----DDLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLLEQ---VDVVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGSF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S V+ IP P + L+++ Q AF +RRK LR +L + Sbjct: 173 NPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEARGF-AGEF 231 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + RAE + + +F + L+ Sbjct: 232 DLQRRAEEVPVAEFEALAAQLS 253 >gi|51473851|ref|YP_067608.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington] gi|62900511|sp|Q68W66|RSMA_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51460163|gb|AAU04126.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington] Length = 268 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 98/269 (36%), Positives = 147/269 (54%), Gaps = 9/269 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + ++I P K GQNF+ D ++ KI +S + VIEIG G G LT+ +L Sbjct: 3 PSIAKHAASHQINPLKKHGQNFIFDSSLCDKIIRASNISENSKVIEIGPGVGGLTRSILH 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + + VIE D++ P+L +I +PN L II+ D LK++ I + +I+NLPY Sbjct: 63 KNPKSLTVIEIDERCIPLLNEIQGYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ + ++ L+ QKEV ERI A ++ YGRLSV+ K Sbjct: 120 HIGTELVIRLLKEAK---LITNMILMLQKEVVERICAMPSTKAYGRLSVICQIVAKVEKC 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246 FD++P F+P PKV S ++ IP NP L +++IT+ F RRK ++ SL+ L Sbjct: 177 FDVAPTAFYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLVP 236 Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRIT 273 +L Q I N RAENL+ +D+ RI Sbjct: 237 NIHEVLTQLKINNNDRAENLTPKDYLRIA 265 >gi|255039492|ref|YP_003090113.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053] gi|254952248|gb|ACT96948.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053] Length = 266 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 126/260 (48%), Gaps = 17/260 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 K+ KK++GQ+FL DLNI ++I + SG V+EIG G G LTQ LL VI Sbjct: 10 KVRAKKHLGQHFLKDLNIAQRIVDGLSGHGGYDRVLEIGPGMGVLTQFLLPKTDFSTYVI 69 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D + L+ R II D LK + + F +I N PYNI +++ F Sbjct: 70 EIDTESVAYLEKHYPDLAPR--IIAGDFLKFNAGEHF--PGKFAVIGNFPYNISSQIFFR 125 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + + QKEV +RI + + YG LSVL + + P F Sbjct: 126 ALEIRDRIP---EIVCMLQKEVAQRIASPPGNKDYGILSVLLQAFYDIDYLVSVPPGAFD 182 Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + ++ + C + ++ + AF +RRKTLR +LK +G + Sbjct: 183 PPPKVQSGVIRLRRNGVSALECDEKLFFRVVKTAFNQRRKTLRNALKPVG------EIPY 236 Query: 256 ET--NLRAENLSIEDFCRIT 273 N RAE LS++DF +T Sbjct: 237 HPLLNKRAEQLSVQDFVTLT 256 >gi|329920627|ref|ZP_08277314.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G] gi|328935885|gb|EGG32345.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G] Length = 295 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNQPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|167769167|ref|ZP_02441220.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM 17241] gi|167668807|gb|EDS12937.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM 17241] Length = 303 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 136/281 (48%), Gaps = 16/281 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L + K +GQNFL++ + ++AE G+ G+ V+EIGAG G LT L Sbjct: 28 IRDVLGRHGFTFSKALGQNFLINPTVCPRMAEQGGARPGVGVLEIGAGVGVLTAELARR- 86 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLP 126 A +V+ +E D + P+L + + N ++II D L+VD I + ANLP Sbjct: 87 ADRVVCVEIDARLLPVLAETLAGFDN-IKIINADVLQVDLHALIAEQFAGLDIVVCANLP 145 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + ++ + +S+T++ QKE +R+ AQ + G +S+ + ++ M Sbjct: 146 YYITSPVVMALLEQRLP---VQSVTVMVQKEAAQRLCAQPGTRGVGAVSIAVRYFSEPHM 202 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS---- 240 +F +S F PSP V S VI P E K+ + AF RRKTL Sbjct: 203 LFAVSRGSFLPSPDVDSAVIRLDIRSAPAVDAGEPAVFFKVVRAAFSMRRKTLLNCLSSG 262 Query: 241 --LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + LL +AG+ + RAE LS+E F I + + Sbjct: 263 LGLSKGNTSALLARAGVPSGARAEQLSMEQFAAIARAVQAH 303 >gi|315654032|ref|ZP_07906948.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195] gi|315488728|gb|EFU78374.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195] Length = 295 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|78187147|ref|YP_375190.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273] gi|119365044|sp|Q3B3D4|RSMA_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78167049|gb|ABB24147.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273] Length = 273 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 11/263 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +I KK +GQNFL D NI +KI +SG+ ++EIG G G LT+ +L + Sbjct: 7 KHTEIAVKKKLGQNFLTDRNITRKIVAASGAGSQDRILEIGPGFGALTREILEVCP-AFT 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+EKD+ ++ ++P +L++I+ D L +D E+ P+R++ N+PY+I T +L Sbjct: 66 VVEKDRALAAFIR---QEYP-QLQLIEADFLDIDLERLA-AGGPLRVLGNIPYSITTPIL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + S TL+ Q EV R+ A ++ YG L+V +F + V Sbjct: 121 FKLLENRR---SITSATLMMQHEVAARLVATPSTKEYGILAVQLQTFCDVRYLFKVGRKV 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P V S VI +P N ++ + + AF +RRKTL +LK + + Sbjct: 178 FRPQPNVDSAVISMVPKKNVAVEDAQAFSRFVRTAFHQRRKTLYNNLKDAYMLQAVDEGT 237 Query: 255 IETNLRAENLSIEDFCRITNILT 277 + LRAE LSIE + ++ Sbjct: 238 L--KLRAEALSIEKLADLFKLVQ 258 >gi|291295556|ref|YP_003506954.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279] gi|290470515|gb|ADD27934.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279] Length = 276 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 90/272 (33%), Positives = 138/272 (50%), Gaps = 18/272 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ +L Y + K GQNFL++ + L++I E+ G G TV+E+G G G LT+ L Sbjct: 13 SPKVVRDLLERYGLKADKRFGQNFLVERSYLQQIVEAVGLTPGQTVVEVGPGLGTLTRAL 72 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 GAR V+ IE D++ + + + P ++II DAL D+ NL Sbjct: 73 AEAGAR-VVSIEMDRRLEAVYAETLAGLP--VQIIWADALSFDWSSL---PPQSLFAGNL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNI T L+ + ++ + + L QKEV R+ A+ +P YG LS+ + A Sbjct: 127 PYNIATPLITQLLLSNR----FRRIVALVQKEVALRMVARPATPAYGLLSLRVQYHAAAR 182 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + D+ P FFP PKVTS+VI P+ P L ++ + AF +RRKTL +LK G Sbjct: 183 RIVDVPPGAFFPPPKVTSSVICLQPNNRP---DHPGLFRLIEAAFAQRRKTLVNALKAAG 239 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRI 272 + L G+ N+RAE L + F ++ Sbjct: 240 YPPERVKRGLEAMGLPDNVRAEALGLPQFEQM 271 >gi|313891618|ref|ZP_07825225.1| dimethyladenosine transferase [Dialister microaerophilus UPII 345-E] gi|313119896|gb|EFR43081.1| dimethyladenosine transferase [Dialister microaerophilus UPII 345-E] Length = 284 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 ++ + I K +GQNFL+ +I+K+IA ++ + V+EIG+G G LTQ L GA Sbjct: 15 LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 73 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 VI E D+ IL+ + N ++II +D LK D K + + ANLPY I T Sbjct: 74 VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + +D + + QKEV ERI+A+ + YG LS+ + + + DI P Sbjct: 132 ILLYLVQSDFP---ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 188 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247 F P P VTST++ P + ++ + FG+RRK ++K G Sbjct: 189 TAFIPRPAVTSTILKMKKRDKPAVEVTDKKLFFRLVKMGFGQRRKVFTNAMKSGGIPKDM 248 Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITN 274 +L +AGI+ R E S+E++ R+ N Sbjct: 249 INEILFKAGIDGKRRGETFSMEEYARLAN 277 >gi|309803693|ref|ZP_07697783.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d] gi|309804982|ref|ZP_07699040.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c] gi|309806700|ref|ZP_07700695.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b] gi|312874063|ref|ZP_07734098.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d] gi|325913223|ref|ZP_08175592.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B] gi|308164291|gb|EFO66548.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d] gi|308165742|gb|EFO67967.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c] gi|308166880|gb|EFO69064.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b] gi|311090403|gb|EFQ48812.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d] gi|325477487|gb|EGC80630.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B] Length = 295 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|325288376|ref|YP_004264557.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM 8271] gi|324963777|gb|ADY54556.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM 8271] Length = 297 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 149/297 (50%), Gaps = 23/297 (7%) Query: 3 MNNKSHSLK--TILSHY-------KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53 MNN S LK L Y +K +GQNFL+ +++ I + G V+E Sbjct: 1 MNNSSKDLKRKETLLQYTKRVLRGGKTIRKSLGQNFLVSAEVVESIVAAIGENHFWPVVE 60 Query: 54 IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 IG+GPG LT+ L ++ +E DQ+ IL++ P +++I+Q DALK++ E+ + Sbjct: 61 IGSGPGGLTRALAE-KVDQLWAVELDQENVEILREEMP--PEKVKILQADALKLNLEELW 117 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 ++ NLPY I LL +++ + + ++ QKEV ER+TA+ YG Sbjct: 118 GKQKGW-LVGNLPYYITNPLLMHFLEQSSN---LFGMIVMVQKEVAERMTAKPGGKEYGI 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232 LS+ A ++F++ P F P PKVTS V+ P C + +I + AF + Sbjct: 174 LSIAVQLAADARILFEVPPTSFHPQPKVTSAVVRLDIRPFPDFDCERDEFFRIVKAAFAQ 233 Query: 233 RRKTLRQSLK---RLGGEN---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 RRKTL +L + E L +AG+E RAE LSI DF +T +T + ++ Sbjct: 234 RRKTLANALSAGLHISKEEVITALGKAGLEGKRRAETLSIADFQEVTRQMTGRKQVS 290 >gi|325278903|ref|YP_004251445.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter splanchnicus DSM 20712] gi|324310712|gb|ADY31265.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter splanchnicus DSM 20712] Length = 281 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 127/269 (47%), Gaps = 18/269 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK +GQ+FL D NI +KI +S + ++EIG G G LT+ L A V I+ Sbjct: 24 VRAKKSLGQHFLRDQNIARKITDSLLPVTRD-ILEIGPGMGVLTRHLFANPAFSVRAIDI 82 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 DQ+ L ++ +R I+ D LK D +++ P +I NLPYNI +++ F I Sbjct: 83 DQESIDYLHQELPEYQDR--ILYGDFLKTDIRQYYQ--EPFSVIGNLPYNISSQIFFRII 138 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ERI A S YG LSV +F + VF P Sbjct: 139 ENR---HLVRQVVCMIQKEVAERIAASPGSKTYGILSVFLQAFYHIEYLFTVGEKVFDPP 195 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256 PKV S VI + + C + + + F +RRKTLR S++ + G + Sbjct: 196 PKVKSAVIRLTRNERVELGCEEKLFFNVVKTGFNQRRKTLRNSIRGIIPP------GFDS 249 Query: 257 --TNLRAENLSIEDFCRITNILTDNQDIA 283 NLR E L I DF ++ + N++I Sbjct: 250 PYLNLRPEQLGITDFLQLCQDIEKNRNIG 278 >gi|160947751|ref|ZP_02094918.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270] gi|158446885|gb|EDP23880.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270] Length = 280 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 144/281 (51%), Gaps = 14/281 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K +K I + K GQNFL D NIL+KI E S VIEIG G G LT+ L Sbjct: 5 KLSVIKEICDKFGFSFSKNFGQNFLTDRNILEKIVEVSAVGKDYGVIEIGPGFGVLTKFL 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRII 122 L A KV+ IE D + +L S++ N E +Q DALK+D +K I ++ Sbjct: 65 LE-KAGKVVSIEIDTRLKEVLDYTLSEYDN-FEFVQSDALKIDLKKLIEEKFTQKKIVVV 122 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T ++ + +D ES+T++ QKEV +R+ A +NS +S+ + Sbjct: 123 ANLPYYVTTPIITKLLESDL---DLESITIMVQKEVAQRLVADENSKDNSSISLFVKYYA 179 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 A + F +S +VF P+P V S+V++ +++ K+ + F RRKT+ S Sbjct: 180 DANIAFSVSRNVFVPAPNVDSSVVNMKLKKEKFEY-EKTMFKLIKNGFENRRKTILNSFC 238 Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + G E +L + I+T +RAE LS++DF I + Sbjct: 239 KSGIEKEKIIKILEKLDIDTRIRAEKLSLKDFKNIAREYEN 279 >gi|118088399|ref|XP_426165.2| PREDICTED: similar to transcription factor B1, mitochondrial [Gallus gallus] Length = 350 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 141/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ +++ +K + QNFLLDL + KI +G L V E+G GPG +T+ + Sbjct: 14 PLPTVGEIIKLFRLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++++EKD +F P L+ +S P ++ I+ D L EK F + Sbjct: 74 LNAGVEQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPNHLKKNWEDEP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171 I II NLP+++ T L+ W+ + PF +TL FQKEV ER+TA Sbjct: 134 PNIHIIGNLPFSVSTPLIVKWLENVSKRDGPFIYGRTQMTLTFQKEVAERLTANTGGKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS+++ F I F P P V V+HF P + P I E ++K+ Q F Sbjct: 194 SRLSIMSQHLCTVDNCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVF 253 Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + ++ L E L+ A ++ LR L++ F + N D Sbjct: 254 QFRRKYCYRGVEILFPERERLKKTEQLMMAADVDPTLRPFQLTMAHFRNLCNTYRKMCD 312 >gi|73748246|ref|YP_307485.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1] gi|119365021|sp|Q3ZZE6|RSMA_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|73659962|emb|CAI82569.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1] Length = 291 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 138/271 (50%), Gaps = 15/271 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGALTEELLKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +I D LK E+ P +++ANLPY I Sbjct: 79 GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A P ES+ ++ QKEV + I A+ G L++ + +++ + Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTGDM--GLLTLSVRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246 F+P P+V S ++ IP + E K+ + FG RRKTL +L + G Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +LL+ AGI+ RAE LS+E++ ++ Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKLC 283 >gi|320010315|gb|ADW05165.1| dimethyladenosine transferase [Streptomyces flavogriseus ATCC 33331] Length = 290 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 12 PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V+ +E D L +R ++ DA+ V +P ++ Sbjct: 72 E-AADRVVAVEIDDVLAGALPATVAARLPGRADRFALVHSDAMLVTE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQAEVADRLAARPGNKVYGVPSVKANWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 I VF+P+P V S ++ PI + + AF +RRKTLR + Sbjct: 185 DVKRAGSIGRTVFWPAPNVDSGLVSLARRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAA 244 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274 L E L AGI R E L++E+F I Sbjct: 245 LSGWAGSAPAAEAALTAAGISPQARGEALTVEEFAAIAE 283 >gi|332798095|ref|YP_004459594.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter sp. Re1] gi|332695830|gb|AEE90287.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter sp. Re1] Length = 276 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 132/279 (47%), Gaps = 18/279 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + Y I K +GQ+FL+D L + E++ V+EIG G G LT L T A++V Sbjct: 1 MKKYNIKADKRLGQHFLIDSRPLLSMIEAAQLSPEDEVLEIGPGLGVLTLELGTR-AKRV 59 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGT 131 + +EKD+Q P+L D++ N + I+++D LK+D EK ++IANLPY I Sbjct: 60 VAVEKDRQLIPVLDDLTRDFKN-ICILEEDVLKLDLEKMSESLFGGRFKVIANLPYYITN 118 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ I L+ QKEV +R+TA YG LS+ M+ I Sbjct: 119 PIIMKIIENRNMVTL---AVLMVQKEVAQRLTACPGKKDYGILSIAVKLYADVNMICTIG 175 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246 F P PKV S V+ P K+ + AFG+RRKT++ SLK Sbjct: 176 RESFLPPPKVESAVVRLTLRQEPRVQLKDESFFFKVVEAAFGERRKTIKNSLKSRLALAG 235 Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + L AGI+ R E LSIE++ R+ L + Sbjct: 236 TDLDIIDKALEAAGIDALRRGETLSIEEYARLAEELQRH 274 >gi|325283380|ref|YP_004255921.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus proteolyticus MRP] gi|324315189|gb|ADY26304.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus proteolyticus MRP] Length = 282 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 147/277 (53%), Gaps = 18/277 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +K +++ + I P K +GQNFL+D NIL+ IA++ G+ +G+ V+E+G G G LT+ L Sbjct: 15 SPARVKDLMARHGIRPTKSLGQNFLIDGNILRAIADAGGAAEGVRVLEVGPGLGVLTREL 74 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 GA +V +EKDQ P+L++ + + I+ DAL+ D+ + R+IANL Sbjct: 75 AERGA-QVTTLEKDQGLRPVLEETLAGLD--VNIVWGDALEFDYASL---PAGTRVIANL 128 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I LL ++ A P S T+L QKEV +R+ +Q +YG L+ L Sbjct: 129 PYYITGPLLSRFMRA----PSIVSATVLVQKEVAQRLASQPGDDNYGFLTALAHLYGTVR 184 Query: 186 MMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + D+ F P+P VTS+V+ P P E+ ++ A RRKTLR +LK Sbjct: 185 PVRDVPKGSFIPAPAVTSSVVRLDFDRERPQPS--EAYIRLIDAALHHRRKTLRNNLKMA 242 Query: 245 G-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L AG+ ++RAE++ + ++ + L Sbjct: 243 GHPVDRIEAALEAAGLRPDVRAEDVPLAQMRQLADAL 279 >gi|310823436|ref|YP_003955794.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] gi|309396508|gb|ADO73967.1| Dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] Length = 278 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 17/277 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + IL + + K GQNFL D L+ IA++ G V+E+G G G+LT+ L Sbjct: 3 SPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGLGHLTRFLAAT 62 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GA +V +E+D+ +L+ P + ++ +A VDF + + + ++ NLPY+ Sbjct: 63 GA-QVTAVERDRDMISVLEK--EAIPG-VRVVAGNAATVDFAQAAGV-PQVAVVGNLPYH 117 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + + +LF + QKEV ER+ A+ + YG LSVL G +F Sbjct: 118 LTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLLGLHFGIEHLF 174 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR--- 243 + +F P PKV S V+ +P E ++ + +F RRKTL SLK Sbjct: 175 TLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKTLLNSLKSDRT 234 Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276 L L AGI+ RAE LS ++F + L Sbjct: 235 LATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 271 >gi|332705358|ref|ZP_08425436.1| dimethyladenosine transferase [Lyngbya majuscula 3L] gi|332355718|gb|EGJ35180.1| dimethyladenosine transferase [Lyngbya majuscula 3L] Length = 282 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + +K Q++L L +I ++ ++EIG G G LTQ LL + V+ +E Sbjct: 3 LKARKKFAQHWLRSEEALNQIVTAANLQKSDRILEIGPGTGILTQRLLPF-VQSVVAVEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLL 134 D+ +L + N L ++Q D L +D + N P +++AN+PYNI +L Sbjct: 62 DRDLCRLLVKKLGKIDNFL-LLQGDFLSLDLDTLLANFSNFQKPNKVVANIPYNITGPIL 120 Query: 135 FNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + T P P ++ + LL QKEV +R+ A+ +S +G LSV + + ++ D+ Sbjct: 121 EKLLGTITQPAVPGFDLIVLLVQKEVAQRLYAKPSSRQFGALSVRVQYLAECELICDVPG 180 Query: 193 HVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F P PKV S V+ P P L+ + + FG +RK LR +LK + + Sbjct: 181 SAFSPPPKVDSAVVRLHPSLAEPPASDPRCLETLLKLGFGSKRKMLRNNLKSVIERDRIT 240 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL Q I RAE+LS+ + + N +T Sbjct: 241 QLLEQLEISPQARAEDLSVAQWIALANQIT 270 >gi|300088594|ref|YP_003759116.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528327|gb|ADJ26795.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 306 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 16/283 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ +L + + +K +GQNFL+D +L KI ++G TV+E+G GPG +T L Sbjct: 32 KTEVRRLLDSHGLSARKGLGQNFLIDRGVLDKIVRAAGIETADTVVEVGPGPGVMTAALA 91 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A +VI +E D L++ Q N +++I D L + + S P +++ANLP Sbjct: 92 E-KAGQVIAVELDFGMVAALRETVGQRSN-VKVIAGDILDISPSELTGAS-PYKVVANLP 148 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + +L +++ A P SLT++ QKEV +ITAQ P L++ + + + Sbjct: 149 YYITSPVLRHFLEASHRPS---SLTVMVQKEVARQITAQP--PEMSLLALGVQFFGRPRV 203 Query: 187 MFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-R 243 + + F+P+PKV S ++H P P + ++ + FG RRK L +L Sbjct: 204 VSYVPAGCFYPAPKVASAILHIEVFPERKLPPKQEKGFFRLARAGFGTRRKQLANALSGG 263 Query: 244 LGGENL-----LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 LG + L QAGI RAE LSI+++ + + + + D Sbjct: 264 LGADKANVIQYLKQAGIVPERRAETLSIDEWLALREVWSFDDD 306 >gi|115372809|ref|ZP_01460115.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] gi|115370290|gb|EAU69219.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1] Length = 286 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 130/279 (46%), Gaps = 17/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + IL + + K GQNFL D L+ IA++ G V+E+G G G+LT+ L Sbjct: 9 VESPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGLGHLTRFLA 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 GA +V +E+D+ +L+ P + ++ +A VDF + + + ++ NLP Sbjct: 69 ATGA-QVTAVERDRDMISVLEK--EAIPG-VRVVAGNAATVDFAQAAGV-PQVAVVGNLP 123 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y++ + +LF + QKEV ER+ A+ + YG LSVL G Sbjct: 124 YHLTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLLGLHFGIEH 180 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR- 243 +F + +F P PKV S V+ +P E ++ + +F RRKTL SLK Sbjct: 181 LFTLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKTLLNSLKSD 240 Query: 244 --LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276 L L AGI+ RAE LS ++F + L Sbjct: 241 RTLATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 279 >gi|329122105|ref|ZP_08250713.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965] gi|327466912|gb|EGF12428.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965] Length = 286 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 ++ + I K +GQNFL+ +I+K+IA ++ + V+EIG+G G LTQ L GA Sbjct: 17 LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 75 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 VI E D+ IL+ + N ++II +D LK D K + + ANLPY I T Sbjct: 76 VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 133 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +L + +D + + QKEV ERI+A+ + YG LS+ + + + DI P Sbjct: 134 ILLYLVQSDFP---ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 190 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247 F P P VTST++ P + ++ + FG+RRK ++K G Sbjct: 191 TAFIPRPAVTSTILKMKKRDKPAVEVNDKKLFFRLVKMGFGQRRKVFTNAMKSGGIPKDM 250 Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITN 274 +L +AGI+ R E S+E++ R+ N Sbjct: 251 INEILFKAGIDGKRRGETFSMEEYARLAN 279 >gi|282859175|ref|ZP_06268297.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010] gi|282587994|gb|EFB93177.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010] Length = 267 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I K+IA++ + I ++EIG G G LTQ L+ R+V +E Sbjct: 4 VKPKKNLGQHFLTDLSIAKRIADTVDAYPEIPILEIGPGMGVLTQYLVE-KPREVKAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + + II D LK+D + F+ + N PY+I +++ F + Sbjct: 63 DSESVAFLYERFPKLHEN--IIGKDFLKMDLNEIFD-GKQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ A + YG LSVL +F + HVF P Sbjct: 120 DYKELIP---CCTGMIQREVALRMAATPGNKAYGILSVLIQAWYDVEYLFTVDEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256 PKV S V+ + + + C K++ + F +RRK LR SLK++ + + E Sbjct: 177 PKVKSAVVRMMRNNVTDLGCDEILFKRLIKTVFNQRRKMLRVSLKQMMNNEKVSEGFFEQ 236 Query: 257 --TNLRAENLSIEDFCRITNILTD 278 R E LSIE F +TNI+ + Sbjct: 237 EMMTKRPEQLSIEQFVELTNIVGE 260 >gi|238855589|ref|ZP_04645891.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3] gi|260664781|ref|ZP_05865632.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US] gi|282932725|ref|ZP_06338133.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] gi|238831806|gb|EEQ24141.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3] gi|260561264|gb|EEX27237.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US] gi|281303135|gb|EFA95329.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1] Length = 294 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K I++ Y KK +GQNFL+ LN + I +++ V+EIG G G+LT+ +L G Sbjct: 13 TKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIDGDDQVLEIGPGIGSLTEQMLLRG 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQ------HPNRLEIIQDDALKVDFEK----FFNISSPI 119 A KV+ E DQ IL + Q + +++ D LK DF+ FF+++ P+ Sbjct: 73 A-KVLAYEIDQDLPEILHNELPQKIGDKYLDDVFKLVMKDILKADFKADIGNFFDLNKPV 131 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T ++F +D +ESLTL+ QKEV ER+ A + YG L++ Sbjct: 132 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 188 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLR 238 + M + F P PKV S V+ P + + ++ + + F +RRKTL Sbjct: 189 TQMSVKMAVMVDHTNFNPQPKVDSAVVVLKPLVQKVDVGDTDNFDHVVKMCFSQRRKTLN 248 Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK L + LL + +R E LSI+ F + L Sbjct: 249 NNLKSLVKDSEERKKLLQMLDLPEKVRPEELSIDQFIGLAKALK 292 >gi|239818231|ref|YP_002947141.1| dimethyladenosine transferase [Variovorax paradoxus S110] gi|259494262|sp|C5CS95|RSMA_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|239804808|gb|ACS21875.1| dimethyladenosine transferase [Variovorax paradoxus S110] Length = 255 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 132/260 (50%), Gaps = 13/260 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I +K GQ+FL D I+ I + G ++EIG G LTQ L+ R + VIE Sbjct: 3 HIARKRFGQHFLSDGGIIDAIVQEIAPQPGDAMVEIGPGLAALTQPLVERLGR-LTVIEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137 D+ L++ HP +LE+I+ D LKVDF ++P+R++ NLPYNI T +LF+ Sbjct: 62 DRDLAKRLRE----HP-QLEVIESDVLKVDFAALATRFAAPLRVVGNLPYNISTPILFHL 116 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV +R+ A+ + Y RLSV+ WR + + + P F P Sbjct: 117 LG---FAHLIADQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYRMENVLFVPPESFDP 173 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-IE 256 P+V S V+ +P P L +I Q AF +RRK +R +L + E+ AG + Sbjct: 174 PPRVDSAVVRMVPLAEPPAVDAARLGEIVQVAFSQRRKIMRHTLGKWLDEHGF--AGQFD 231 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE + + ++ + + Sbjct: 232 AQRRAEEVPVAEYVALAQAV 251 >gi|262164104|ref|ZP_06031843.1| dimethyladenosine transferase [Vibrio mimicus VM223] gi|262027632|gb|EEY46298.1| dimethyladenosine transferase [Vibrio mimicus VM223] Length = 232 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 7/235 (2%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G +T+ + K VIE D+ L++ + ++L I + DA++ DF+ Sbjct: 1 MVEIGPGLGAITEP-VGREVDKFTVIELDRDLAERLRNH-PELASKLTIHEGDAMRFDFK 58 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 + ++ +R+ NLPYNI T L+F+ + + + QKEV R+ A S Sbjct: 59 QLVKPNNKLRVFGNLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKA 115 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQE 228 YGRL+V+ + K + ++ P F P PKV S V+ +P+ + P P LE L ++ +E Sbjct: 116 YGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVRE 175 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 F +RRKT+R K L L GI +R ENL++ F + N L A Sbjct: 176 GFNQRRKTVRNCYKGLVEPETLEALGINPGMRPENLTLAQFVALANWLDAQHQKA 230 >gi|320449691|ref|YP_004201787.1| dimethyladenosine transferase [Thermus scotoductus SA-01] gi|320149860|gb|ADW21238.1| dimethyladenosine transferase [Thermus scotoductus SA-01] Length = 272 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 144/277 (51%), Gaps = 19/277 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ +L + + K +GQNFL+ L++I E++ G V E+G G G LT+ L Sbjct: 7 SPKRIRELLKRHGLFADKRLGQNFLVSEVHLRRIVEAAKPFTG-PVYEVGPGLGVLTRAL 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 GA +V IEKD + P+L++ P + ++ DAL +E+ + ++ANL Sbjct: 66 AEAGA-QVTAIEKDLRLKPVLEETLKGLP--VRLVFADALAYPWEE---VPENSLLVANL 119 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYNI T L+ + + L L QKEV ER+ A+ N+P YG LS+ + +A Sbjct: 120 PYNIATPLVTRLLRTGR----FARLVFLVQKEVAERMVARPNTPSYGLLSLRVAYHAQAE 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 +FD+ P FFP PKV S+++ P P +L ++ + AF KRRKTL+ +L G Sbjct: 176 KLFDLPPGAFFPPPKVVSSLVRLTPRKVP---DDPALFQLLEAAFSKRRKTLKNALTAAG 232 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E L G+ ++RAE L + F R+ ++L Sbjct: 233 YPKEEVEEALRSLGLPPDIRAEALDLSHFQRLKDLLY 269 >gi|319441627|ref|ZP_07990783.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Corynebacterium variabile DSM 44702] Length = 318 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 28/290 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + I P K MGQNF++D N +++I ++ VIE+G G G+LT LL Sbjct: 16 EIRALAAELDITPTKKMGQNFVIDPNTVRRIVSAAELSTDDHVIEVGPGLGSLTLALLEQ 75 Query: 69 --GARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIR 120 G V +E D++ L + + + + +I DAL + + +P Sbjct: 76 VGGTGGVTAVELDKRLAARLPRTIVEFAPARADDVTVIDHDALTLTAADLAEAGVPAPTA 135 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ +L + + P + ++ Q EV +R+ A S YG SV G+ Sbjct: 136 LVANLPYNVSVPVLLHLLQE---FPSIRRVLVMVQLEVADRLAASPGSKIYGVPSVKAGF 192 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPH------------LNPIPCCLESLKKITQE 228 + I +VF+P+PK+ S ++ + + + +T Sbjct: 193 YGAVSKAGTIGKNVFWPAPKIDSGLVRIDRWTDSDRPWQDALTSHDPETLRKEVFAVTDA 252 Query: 229 AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 AF +RRKTLR +L G E +L AGI+ R E L F + Sbjct: 253 AFLQRRKTLRAALSGHFGSGADAEAVLTAAGIDPKERGEKLDTGSFVDLA 302 >gi|145222523|ref|YP_001133201.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK] gi|315442971|ref|YP_004075850.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1] gi|226732599|sp|A4T6P3|RSMA_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|145215009|gb|ABP44413.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK] gi|315261274|gb|ADT98015.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1] Length = 314 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 20/286 (6%) Query: 1 MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT+ + ++ + P+K GQNF+ D N +++I +S V+E+G G G Sbjct: 1 MTIRLLGRTEIRHLAKSIDFRPRKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115 +LT LL GAR V +E D L + H NRL ++ D L + Sbjct: 61 SLTLALLDRGAR-VTAVEIDPVLATQLPTTIAAHSHSEVNRLTVLNRDILTFKQSDMTEM 119 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 P ++ANLPYN+ L + ++ P ++ ++ Q EV ER+ A+ YG S Sbjct: 120 --PTALVANLPYNVAVPALLHLLAE---FPSIRTVMVMVQAEVAERLAAEPGGKDYGVPS 174 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFG 231 + +SP VF+P P+V S ++ + P P E + ++ AF Sbjct: 175 AKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDTEFQEQVFELIDIAFA 234 Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 +RRKT R + G + L A I+ + R E LSI DF R+ Sbjct: 235 QRRKTSRNAFAEWAGSGNESASRLLAASIDPSRRGETLSINDFVRL 280 >gi|119485101|ref|ZP_01619486.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106] gi|119457329|gb|EAW38454.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106] Length = 273 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 13/267 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K Q++L L +I ++ ++EIG G G LT+ LLTL A+ V+ +E D+ Sbjct: 4 PRKQFAQHWLRSPTALNQIVNAAQLSTDDHLLEIGPGTGVLTERLLTL-AQTVLAVEIDR 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFN 136 L + N L ++Q D L + E F N +P +++AN+PYNI +L Sbjct: 63 DLCKKLVPKFGKRDNFL-LLQGDILTLRLEDYLQDFPNFQNPNKVVANIPYNITGPILEK 121 Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + A P ++ + LL QKEV +R+ A S +G LSV + K + D+ Sbjct: 122 LLGNIAQPNPQPYDLMVLLVQKEVAQRLCAGPGSRTFGALSVRVQYLAKCEFICDVPSKA 181 Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249 F+P PKV S V+ P P + L+ + F +RK LR +L+ + + + Sbjct: 182 FYPPPKVDSAVVRLRPRCIEYPAESPKHLEMAVKLGFASKRKMLRNNLQSVIDRDQLTQI 241 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 L Q + RAE+LS+E + ++N L Sbjct: 242 LEQLEVNPQARAEDLSVEQWVSLSNRL 268 >gi|242279077|ref|YP_002991206.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638] gi|259494247|sp|C6BSW3|RSMA_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|242121971|gb|ACS79667.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638] Length = 262 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 16/269 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 + KK +GQNFL D NI +KI +S + ++IEIG G G LT+ +L G + + Sbjct: 2 QTRHRAKKSLGQNFLQDANIARKIVDSLKITENDSIIEIGPGQGALTKFILEAGPESLTL 61 Query: 76 IEKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +EKD+ P L+ +++P R+E+ +DALK D+ + +I+ NLPYN+ ++++ Sbjct: 62 VEKDRDLAPALE---AEYPEARVEL--EDALKFDWAGL-DPDRNWKIVGNLPYNVASKIM 115 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 ++ + + + Q EV +R+T+ S YG +SV + +F + P V Sbjct: 116 WDIAAQCNA-----TCVFMVQHEVAQRVTSGPGSKKYGAISVWIQSFCRTDYLFKVPPTV 170 Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250 F P PKV S VI F P P +E L K+ + F RRK L + LK + ++ Sbjct: 171 FKPKPKVDSAVIKFFPLPEEEKPSDIEGLAKLVKYCFQYRRKQLGKILKSFISDAVIQWA 230 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 + G+ R E LS F + + ++ Sbjct: 231 EKEGVSLTDRPEALSPLQFQSLYKSVKND 259 >gi|328954033|ref|YP_004371367.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca acetoxidans DSM 11109] gi|328454357|gb|AEB10186.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca acetoxidans DSM 11109] Length = 287 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 136/282 (48%), Gaps = 15/282 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S K + +++ P + +GQ+FLL + +++ + V+EIGAG G LT L Sbjct: 5 SPKVLCRRHRLTPNRSLGQHFLLHPDQARRLVAALELRGQEVVVEIGAGLGALTYFLAES 64 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPY 127 G R VI +E D++ PIL + + ++ DALK D+ + + NLPY Sbjct: 65 GGR-VIALELDRRLIPILTTEVLPGFSNVMVVSQDALKFDYLALSREEGQSLTVAGNLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + LLF + T + + Q+EVG R+ AQ YG LSVL + + Sbjct: 124 QITSPLLFKLMGVKTA---IRIMLFMVQQEVGLRLMAQPGGKDYGILSVLIQYHFHLRRL 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSL----- 241 F + P F+P+PKV S V+ F P P + L ++ + AF RRKTLR +L Sbjct: 181 FLLKPSNFYPAPKVDSVVLGFRPRLPEPSAINEDFLAQVVKAAFSTRRKTLRNTLTAQSS 240 Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +LH I+ RAE LS++DF R++N L + Sbjct: 241 LLRASPAVILAILHDLRIDPGRRAETLSVDDFVRLSNRLAEK 282 >gi|309808503|ref|ZP_07702402.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a] gi|308168331|gb|EFO70450.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a] Length = 295 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|241248269|ref|XP_002402915.1| dimethyladenosine transferase, putative [Ixodes scapularis] gi|215496424|gb|EEC06064.1| dimethyladenosine transferase, putative [Ixodes scapularis] Length = 382 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 22/294 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ +L Y+I + + QNFL+D + +++ +++G + VIE+G GPG LT+ L Sbjct: 70 PLPTVRDLLRMYRIRAMRQLSQNFLMDPKLTRRLVKAAGKIRDHHVIEVGPGPGCLTRPL 129 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L LGAR+V+VIEKD +F P L+ ++ NRL+II D E Sbjct: 130 LELGARQVVVIEKDPRFLPSLQLLAEAADNRLKIIMGDVFNYSMEDLIPQELGVPWEGPP 189 Query: 117 SPIRIIANLPYNIGTRLLFNWI--SADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171 P+ ++ NLP+++ T LL W+ ++ PF LTL FQKEV ERI A Sbjct: 190 PPVHVVGNLPFSVSTPLLVRWLRMASQRKGPFLHGRVPLTLTFQKEVAERIVAPVMHVQR 249 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ +S FFP P V V+ +P + P I + ++K+ F Sbjct: 250 CRLSVMCQAYCSVQHQLTLSGGSFFPKPDVDVGVVRLVPLVEPVIQQPFDLVEKVCNCLF 309 Query: 231 GKRRKTLRQSLKRLGGENLLHQA-------GIETNLRAENLSIEDFCRITNILT 277 R+K L LK L L A I+ R L++E+ RI + Sbjct: 310 NGRQKYLSNGLKNLFPSRHLDLAKDLVKLVEIDPQTRVVQLTVEEVGRICQVYE 363 >gi|15605077|ref|NP_219862.1| dimethyladenosine transferase [Chlamydia trachomatis D/UW-3/CX] gi|76789080|ref|YP_328166.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13] gi|166154566|ref|YP_001654684.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu] gi|166155441|ref|YP_001653696.1| dimethyladenosine transferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335829|ref|ZP_07224073.1| dimethyladenosine transferase [Chlamydia trachomatis L2tet1] gi|27151560|sp|O84358|RSMA_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365015|sp|Q3KM04|RSMA_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729770|sp|B0B7S3|RSMA_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729771|sp|B0BBY8|RSMA_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|3328775|gb|AAC67949.1| Dimethyladenosine Transferase [Chlamydia trachomatis D/UW-3/CX] gi|76167610|gb|AAX50618.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13] gi|165930554|emb|CAP04049.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu] gi|165931429|emb|CAP07003.1| dimethyladenosine transferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|296435873|gb|ADH18047.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768] gi|296436799|gb|ADH18969.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222] gi|296437733|gb|ADH19894.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074] gi|297140232|gb|ADH96990.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301] gi|297748484|gb|ADI51030.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC] gi|297749364|gb|ADI52042.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC] Length = 277 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L + L KK + QNFL+D NIL+KI ++ G V+EIG G G L+++ Sbjct: 4 SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL+ GA VI +EKD F L SQ P +EI + + RI+AN Sbjct: 64 LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+I T LL + P W+++T++ Q EV RITA+ YG L+V + Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F +SP+ F+P P V S V+H H +E +T+ AFG+RRK L SLK Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236 Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L ++ +L Q G R E + +E++ +I ++L D Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|157804052|ref|YP_001492601.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel] gi|166221697|sp|A8EZN3|RSMA_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157785315|gb|ABV73816.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel] Length = 270 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 98/269 (36%), Positives = 145/269 (53%), Gaps = 9/269 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + + I P K GQNF+ D ++ KI S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAALHHINPLKKHGQNFIFDSSLCHKIVRVSNLEENSRVLEIGPGSGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + VIE D++F P+L +I +PN L II+ DALK++ + II+NLPY Sbjct: 63 KNPESLTVIETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDL--GYDKVTIISNLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ W+ S+TL+ QKE+ ERI A ++ YGRLSV+ K Sbjct: 120 HIGTELVIRWLKEAR---LITSMTLMLQKELVERICAMPSTKAYGRLSVICQLIAKVEKC 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 F+++P F+P PKV S ++ P N P + +++IT+ AF RRK ++ SLK Sbjct: 177 FEVAPTAFYPPPKVYSAIVKLTPLENLPSIALITKVEQITKLAFAGRRKMIKSSLKNFVP 236 Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRIT 273 +L Q I N RAENL+ +D+ I Sbjct: 237 VKNEVLTQLNINDNYRAENLTPQDYLMIA 265 >gi|300864419|ref|ZP_07109290.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506] gi|300337563|emb|CBN54438.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506] Length = 281 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 14/269 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L +I +++ V+EIG G G LT+ LL A+ V+ +E D Sbjct: 5 QPRKRFAQHWLKSEKALNQIVKAADLSQ-DRVLEIGPGTGILTRSLLP-AAQSVVAVEID 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLF 135 + L + N L ++Q D L +D E+ F +P +++AN+PYNI ++ Sbjct: 63 RDLCEKLAKQLGKVDNFL-LVQGDILAMDLEEQLAAFPKFQNPNKVVANIPYNITGPIIE 121 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P ++ + LL QKEV ER+ A+ S +G LSV + + ++ D+ Sbjct: 122 KLLGKISAPAAKPFDLIVLLVQKEVAERLYAKPGSRAFGALSVRVQYLAECELICDVPAK 181 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248 F+P PKV S V+ P + P L+ + + FG +RK LR +LK Sbjct: 182 AFYPPPKVDSAVVRLRPRMVEPQAINPVHLESLIKLGFGSKRKMLRNNLKGTIELERLAQ 241 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL + I RAE+LS+ ++ + N L Sbjct: 242 LLEKLQINPQCRAEDLSVAEWVALANNLE 270 >gi|15604515|ref|NP_221033.1| dimethyladenosine transferase [Rickettsia prowazekii str. Madrid E] gi|6225594|sp|O05952|RSMA_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2073482|emb|CAA72482.1| dimethyladenosine transferase [Rickettsia prowazekii] gi|3861209|emb|CAA15109.1| DIMETHYLADENOSINE TRANSFERASE (ksgA) [Rickettsia prowazekii] gi|292572303|gb|ADE30218.1| Dimethyladenosine transferase [Rickettsia prowazekii Rp22] Length = 268 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 100/269 (37%), Positives = 149/269 (55%), Gaps = 9/269 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +KI P K GQNF+ D ++ KI +S L+ VIEIG G G LT+ +L Sbjct: 3 PSIVKHATSHKINPLKKHGQNFIFDSSLCDKIIRASNVLENSNVIEIGPGIGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + + VIE D++ P+L +I +PN L II+ D LK++ I + +I+NLPY Sbjct: 63 KNPKSLTVIEIDERCIPLLNEIQEYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ + ++TL+ QKEV ERI A ++ YGRLSV+ K Sbjct: 120 HIGTELVIRLLKE---VKLITNMTLMLQKEVVERICAIPSTKAYGRLSVICQILAKVEKC 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246 F+++P F+P PKV S ++ IP NP L +++IT+ F RRK ++ SL+ L Sbjct: 177 FNVAPTAFYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLIP 236 Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRIT 273 +L Q I N RAENL+ +D+ RI Sbjct: 237 NIHEVLTQLKINCNDRAENLTPKDYLRIA 265 >gi|269796309|ref|YP_003315764.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542] gi|269098494|gb|ACZ22930.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542] Length = 320 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 23/295 (7%) Query: 1 MTMNNKSH------SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54 M MN+ S+ ++ + + P K +GQNF+ D ++KI S+G G V+E+ Sbjct: 1 MLMNDTSNALLGPVQIRDLAGRLGVRPTKTLGQNFVHDAGTVRKIVRSAGIEAGQHVVEV 60 Query: 55 GAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE 110 G G G+LT LL G V+ +E D L D + + +RL ++ DAL V Sbjct: 61 GPGLGSLTFGLLEAGV-TVVAVEIDPVLAAQLPLTVADRAPEWSDRLTVVLQDALTVTE- 118 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 +P ++ANLPYN+ +L ++ + + ++ Q EV +R+ A + Sbjct: 119 --LPGPAPTALVANLPYNVAVPVLLTFLER---FDSLDRVLVMVQAEVADRLAAPPGNRT 173 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEA 229 YG SV W A I +VF+P P V S ++ +P+ E + ++ A Sbjct: 174 YGIPSVKAAWYASARRTSTIGRNVFWPVPNVDSALVLLERRDHPVTRATRERVFEVVDAA 233 Query: 230 FGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F +RRK LR + + L AG++ R E L+++DF RI L D Sbjct: 234 FAQRRKMLRGALAELAGSAAAAQQALEAAGVDPTTRGEQLTVDDFARIAEALDDQ 288 >gi|259500886|ref|ZP_05743788.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335] gi|302190661|ref|ZP_07266915.1| dimethyladenosine transferase [Lactobacillus iners AB-1] gi|309809117|ref|ZP_07702990.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D] gi|259167580|gb|EEW52075.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335] gi|308170562|gb|EFO72582.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D] Length = 295 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNQPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|329942659|ref|ZP_08291438.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10] gi|332287254|ref|YP_004422155.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] gi|254574590|gb|ACT68006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] gi|313847840|emb|CBY16834.1| dimethyladenosine transferase [Chlamydophila psittaci RD1] gi|325506928|gb|ADZ18566.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] gi|328814919|gb|EGF84908.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10] gi|328914500|gb|AEB55333.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC] Length = 278 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 141/285 (49%), Gaps = 18/285 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ ++ + + + PKK + QNFL+D NIL+KI S G V+EIG G G Sbjct: 1 MSRSSPEQLTRFLAEVHGH-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SP 118 LT++L+ GA V+ +EKD F LK + P LEI DA K + + Sbjct: 60 LTEVLVNQGAH-VVALEKDPMFEETLKQL----PIHLEIT--DACKYPLSQLQDKGWQGK 112 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 R++ANLPY++ T LL P W+++T++ Q EV RI AQ YG L++ Sbjct: 113 GRVVANLPYHVTTPLLTKLFLE--VPNQWKTVTVMIQDEVARRIKAQPGGKEYGSLTIFL 170 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKT 236 + F +SP F P P+V+S V+H P+ L +T+ AFG+RRK Sbjct: 171 QFFVDVRYAFKVSPGCFLPKPQVSSAVVHMTVKDRFPLEEPLRTKFFSLTRAAFGQRRKL 230 Query: 237 LRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L +LK L + L Q R E LS++D+ ++ +L+ Sbjct: 231 LANALKDLYPKERVFEALSQLNFSDKTRPETLSLDDYLKLFELLS 275 >gi|225848984|ref|YP_002729148.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643260|gb|ACN98310.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 266 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 133/262 (50%), Gaps = 9/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQ+FL +++KKI + + T++EIG G G LT+ +L K+ +E Sbjct: 3 KVKAKKQFGQHFLKSQDVVKKIVDEVDIKEDDTILEIGPGTGILTEEILKRNPNKLYSVE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ +P+L++ ++ N E+++ D V+ ++ S ++++ NLPYN+ + ++ N Sbjct: 63 IDKSLYPLLEEKFKEYKN-FELVKSDIFDVNIKEIA-ASKKLKVVGNLPYNVASLIMINC 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + F + QKEV E++ A+ + Y LSV + + F P Sbjct: 121 VFNMEVVDF---CVFMIQKEVAEKLIAKPKTKSYTFLSVFMQTFFDIKYIMSVPARFFSP 177 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS V+ P+ ++ K F RRK +R L +++L +A I+ Sbjct: 178 PPKVTSAVVKLTPYNRFGIKDIKKYKNFVSHLFTDRRKMIRSKL----DQSILEKANIKP 233 Query: 258 NLRAENLSIEDFCRITNILTDN 279 LRAE L++EDF R+ ++ ++ Sbjct: 234 TLRAEELNVEDFVRLFEVVKND 255 >gi|332531189|ref|ZP_08407102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Hylemonella gracilis ATCC 19624] gi|332039296|gb|EGI75709.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Hylemonella gracilis ATCC 19624] Length = 254 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 133/257 (51%), Gaps = 19/257 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D I+ I + G G V+EIG G +TQ L+ R + VIE Sbjct: 2 KHIPRKRFGQHFLADDGIIDAIVRAIGPQPGQCVVEIGPGLAAMTQPLVERLGR-MTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136 D+ L+ HP +LE+I+ D LKVDF + +R++ NLPYNI T +LF+ Sbjct: 61 LDRDLAARLRK----HP-QLEVIESDVLKVDFSALAALARQKLRVVGNLPYNISTPILFH 115 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + E + QKEV +R+ AQ ++ Y RLSV+ WR + + + P F Sbjct: 116 LLEHVEA---VEDQHFMLQKEVVDRMVAQPSTADYSRLSVMLQWRYEMEDVLFVPPESFD 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI- 255 P P+V S V+ +P P+ L+++ Q AF +RRK LR +L R L + G+ Sbjct: 173 PPPRVDSAVVRMVPRSAPVALNARLLEEMVQVAFSQRRKLLRHTLGRW-----LEEKGVA 227 Query: 256 ---ETNLRAENLSIEDF 269 + RAE + + ++ Sbjct: 228 DPFDLQRRAEEVPVSEY 244 >gi|221069848|ref|ZP_03545953.1| dimethyladenosine transferase [Comamonas testosteroni KF-1] gi|220714871|gb|EED70239.1| dimethyladenosine transferase [Comamonas testosteroni KF-1] Length = 253 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 12/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D I+ I ++ G ++EIG G L+Q L+ K+ VIE Sbjct: 2 KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLG-KLTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+ L+ + L++++ D LKVDF + +R++ NLPYNI + +LF Sbjct: 61 LDRDLAARLRLR-----DDLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGSF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S V+ IP P + L+++ Q AF +RRK LR +L + Sbjct: 173 NPPPKVDSAVVRMIPREQPADLDPKLLEEMVQVAFSQRRKILRNTLGKWLEAKGFTG-EF 231 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + RAE + + +F + L+ Sbjct: 232 DLQRRAEEVPVGEFEALAAQLS 253 >gi|120405750|ref|YP_955579.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1] gi|226732602|sp|A1TEH3|RSMA_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119958568|gb|ABM15573.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1] Length = 311 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 20/286 (6%) Query: 1 MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT+ + ++ + P+K GQNF+ D N +++I +S V+E+G G G Sbjct: 1 MTIRLLGRTEIRHLAKSIDFRPRKSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115 +LT LL GA KV +E D L + H NRL ++ D L + Sbjct: 61 SLTLALLDRGA-KVTAVEIDPVLANQLPTTIAAHSHSEVNRLTVLNRDILTFKQSDMTEM 119 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 P ++ANLPYN+ L + ++ P ++ ++ Q EV ER+ A+ YG S Sbjct: 120 --PTALVANLPYNVAVPALLHLLAE---FPSIRTVMVMVQAEVAERLAAEPGGKDYGVPS 174 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFG 231 + +SP VF+P P+V S ++ + P P E + ++ AF Sbjct: 175 AKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDPEFRQQVFELIDVAFA 234 Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 +RRKT R + G + L A I+ + R E LSI DF R+ Sbjct: 235 QRRKTSRNAFAEWAGSGNESASRLLAASIDPSRRGETLSINDFVRL 280 >gi|242023243|ref|XP_002432045.1| Dimethyladenosine transferase, putative [Pediculus humanus corporis] gi|212517403|gb|EEB19307.1| Dimethyladenosine transferase, putative [Pediculus humanus corporis] Length = 350 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 150/297 (50%), Gaps = 24/297 (8%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M++ + +++ +L Y++ K + QNFLL+L I +I +++G + V E+G GPG Sbjct: 1 MSVTISPLPTIRELLKLYQVHALKRLSQNFLLNLRITDRIVKAAGKIKDGEVCEVGPGPG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--- 116 +T+ +L +KV+VIEKDQ+F P+L+++ + +II D + D K F+ S Sbjct: 61 AITRSILMRNPQKVVVIEKDQRFEPMLENLETSSYCDFKIIYADIMDYDLSKLFDESLKK 120 Query: 117 ------SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQ 165 I +I NLP+N+ T L+ W++ + W +TL FQ+EV ERI Sbjct: 121 NWNDVTPNIHLIGNLPFNVSTPLIVRWLNDISLRRNAWSLGRVKMTLTFQEEVAERIIGI 180 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKK 224 S + RLSV+ + F I F P PKV V+HF P + P E ++K Sbjct: 181 PGSKNRCRLSVMCQNWCDVHLKFKIPGTAFLPKPKVDVGVVHFEPLIEPFIKMDFEIVEK 240 Query: 225 ITQEAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRIT 273 + + F R+K +++ L + L ++ + LR+ ++++D+ R+ Sbjct: 241 VLRIMFNYRQKYCNRAVANLFPKELSDKLSVELFQRSELNPKLRSYQMTMDDWNRLC 297 >gi|225012229|ref|ZP_03702666.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A] gi|225003784|gb|EEG41757.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A] Length = 261 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 9/259 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK +GQ+FL DL+I +KIA++ V+EIG G G LTQ L+ + + +IE Sbjct: 4 VRAKKKLGQHFLNDLSIAQKIADTLVFDHYKKVLEIGPGMGVLTQFLVP-KTKNLHLIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L++ S+ + I + D LK+ +K F P II N PYNI T+++F + Sbjct: 63 DSESVNYLRNNYSEIDTK--ITEGDFLKIKLKKIFGDH-PFAIIGNFPYNISTQIVFKTL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 PF+ +FQKEV ERI S YG LSVL T +F + PHVF P Sbjct: 120 EYREQIPFF---VGMFQKEVAERICEPPGSKKYGILSVLAQIFYNTTYLFSVPPHVFSPP 176 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ + + + C L KI + +F +RRKTLR SLK L ++L + I Sbjct: 177 PKVDSAVMQMVRKEDFNLDCDEGLLFKIVKLSFQQRRKTLRNSLKTLNLPDILREDTI-F 235 Query: 258 NLRAENLSIEDFCRITNIL 276 +LR E LS +DF ++T + Sbjct: 236 DLRPEKLSGDDFIQLTKRI 254 >gi|330444319|ref|YP_004377305.1| dimethyladenosine transferase [Chlamydophila pecorum E58] gi|328807429|gb|AEB41602.1| dimethyladenosine transferase [Chlamydophila pecorum E58] Length = 280 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 17/286 (5%) Query: 1 MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M ++ S L L+ + PKK + QNFL+D NI++KI S +G V+EIG G G Sbjct: 1 MVLSRSSPERLTRFLAEIRESPKKGLSQNFLIDGNIIRKILSESQVQEGEWVLEIGPGFG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISS 117 LT+ L++ GA VI +EKD +F L ++ H LEI DA +K Sbjct: 61 ALTEGLVSSGAH-VIALEKDPKFATTLSELPLSH---LEIT--DARTYPLQKLSELGWEG 114 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 R+IANLPY+I T LL S P W+S+T++ Q EV RI AQ + YG L++ Sbjct: 115 KGRMIANLPYHITTPLLIKIFSEA--PHMWKSVTVMVQDEVARRIIAQPGNKDYGSLTIF 172 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRK 235 + F + F+P P+V S V+H + P+P + +T+ AF +RRK Sbjct: 173 LQFFAHVRYAFKVRASCFYPQPQVHSAVVHMEVKEHFPLPETVFKDFFTLTRTAFQQRRK 232 Query: 236 TLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277 L +LK L + L L Q I R E LS+ED+ + +L+ Sbjct: 233 YLTNTLKDLFPKELLLSALQQLRISDKARPETLSLEDYLALFKLLS 278 >gi|317124052|ref|YP_004098164.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043] gi|315588140|gb|ADU47437.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043] Length = 323 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 17/285 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K GQNF++D N ++KI +G V+E+G G G+LT LL Sbjct: 29 PTQIRELAERLDVRPTKQWGQNFVVDANTVRKIVRVAGVGPEDVVVEVGPGLGSLTLALL 88 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + R+V IE D + L + + ++ +L ++ DAL V P ++ Sbjct: 89 PV-VRQVTAIEVDPRLAGALEGTVRSLQPENAAKLRLVAADALTVTR---LPGPKPTALV 144 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYNI ++ +++ + ++ Q EV ER+ A+ YG S+ W Sbjct: 145 ANLPYNISVPVVLSFLEQFA---SIRRVLVMVQLEVAERLAAKPGGKIYGVPSLKAAWYA 201 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 + + +VF+P+P V S ++ + P + + + AF +RRK+LR +L Sbjct: 202 DVELAGRVGRNVFWPAPNVDSGLVSLVRRDPPDTTATRQEVFRCIDAAFLQRRKSLRGAL 261 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 G L AG++ R E L I F RI + D Sbjct: 262 ASWAGSPARAEAALLAAGVDPKARGEQLDIVAFARIAEHKDAHDD 306 >gi|167751829|ref|ZP_02423956.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216] gi|167660070|gb|EDS04200.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216] Length = 349 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 85/268 (31%), Positives = 128/268 (47%), Gaps = 18/268 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 + KK +GQ+FL+DLNI +KI +S G S V+E+G G G LT+ LL Sbjct: 88 VRAKKALGQHFLVDLNIARKICDSLGGGTSEKPCPVLEVGCGMGVLTRFLLKRTDVVTYG 147 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 E D + L + RL ++ D LK+D F +R+I N PYNI +++ F Sbjct: 148 AEIDSESVAYLHAHYPEFTPRL--MEGDFLKMDLRTLFPEG--LRVIGNFPYNISSQIFF 203 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + QKEV R+ S YG LSVL +F ++ VF Sbjct: 204 KVLENRDLIP---ECVGMIQKEVAVRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETVF 260 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S V+ + ++ + C ++ + +FG+RRK LR SL+ G+ G Sbjct: 261 NPPPKVKSAVVRLHRNGVDRLDCDERLFVRVVKASFGQRRKMLRNSLRAAFGD----FGG 316 Query: 255 IE---TNLRAENLSIEDFCRITNILTDN 279 +E RAE LS+ DF +T + ++ Sbjct: 317 VEHPFFTQRAEQLSVADFVELTRWVEEH 344 >gi|147904625|ref|NP_001079850.1| dimethyladenosine transferase 1, mitochondrial [Xenopus laevis] gi|82188081|sp|Q7T0W5|TFB1M_XENLA RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|33417098|gb|AAH56010.1| MGC68924 protein [Xenopus laevis] Length = 344 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ + + +K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIGEIVKLFNLRAEKQLSQNFLLDLKLTDKIVRRAGNLQNAYVCEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++V+EKD +F P LK ++ ++ + D L ++ F + Sbjct: 74 LNAGVEELLVVEKDTRFIPGLKMLNEASGGKVRTVHGDILTYRMDRAFPKHLIKSWDDEP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ AD PF +TL FQ+EV ER+TA + Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLEQVADRTGPFTYGRTQMTLTFQQEVAERLTASTKNKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS+++ + F I F P PKV V+H P + P I + ++K+ + F Sbjct: 194 SRLSIMSQYLCNVKNCFTIPGRAFIPKPKVDVGVVHLTPFVQPKIEQPFKLVEKVVRCIF 253 Query: 231 GKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L E + L A ++ LR L++ F ++ N+ + D Sbjct: 254 QFRRKYCHHGVSILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312 >gi|242060710|ref|XP_002451644.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor] gi|241931475|gb|EES04620.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor] Length = 359 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 22/273 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I +K GQ+ L + ++ I +G TV+EIG G GNLT+ LL G + V+ +E Sbjct: 27 GIPFEKSKGQHILKNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVE 86 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L HP +RL++IQ D LK D F +AN+PY I + L F Sbjct: 87 LDPRMVLELNRRFQGHPLSSRLKVIQGDVLKCDLPYF------DICVANIPYQISSPLTF 140 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 +S P + ++FQ+E R+ AQ Y RLSV ++ + + + + F Sbjct: 141 KLLSHR---PIFRCAVIMFQREFAMRLVAQPGDTLYCRLSVNVQLLSRVSHLLKVGKNNF 197 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251 P PKV S+V+ P P + + + F ++ +TL K LL Sbjct: 198 RPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNRTLGSLFKTKRVLELLEKNYK 257 Query: 252 -----QAGIETNLRAEN-LSIEDFCRITNILTD 278 Q + ++ E +S +D + N++ D Sbjct: 258 TMQSLQLTRDADM-GEQKMSADDVALLANMVED 289 >gi|255506936|ref|ZP_05382575.1| dimethyladenosine transferase [Chlamydia trachomatis D(s)2923] gi|289525395|emb|CBJ14872.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2] gi|296434947|gb|ADH17125.1| dimethyladenosine transferase [Chlamydia trachomatis E/150] gi|296438667|gb|ADH20820.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023] Length = 277 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L + L KK + QNFL+D NIL+KI ++ G V+EIG G G L+++ Sbjct: 4 SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL+ GA VI +EKD F L SQ P +EI + + RI+AN Sbjct: 64 LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACEYPLTSLEDKGWKGKGRIVAN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+I T LL + P W+++T++ Q EV RITA+ YG L+V + Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F +SP+ F+P P V S V+H H +E +T+ AFG+RRK L SLK Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236 Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L ++ +L Q G R E + +E++ +I ++L D Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|58617138|ref|YP_196337.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel] gi|93141341|sp|Q5FH30|RSMA_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|58416750|emb|CAI27863.1| Dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel] Length = 262 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 104/263 (39%), Positives = 147/263 (55%), Gaps = 8/263 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +K+I I Sbjct: 5 YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 EKD + PI I + + E I DAL +D P+++IANLPY+I T LL Sbjct: 65 EKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLRNIA--KPPVKVIANLPYSIATLLLIK 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 WI + F+ S TL+FQKEV +RI AQ N+ +YG LS+LT M D P +F Sbjct: 123 WI---NYINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPEIFS 179 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253 P PKV S+VI+ + P + L+KI + F +RRK +R +LK++ + +LH Sbjct: 180 PKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEILHSL 239 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 I NLR ENLSI+ FC I N + Sbjct: 240 NIPNNLRPENLSIKQFCDIANCI 262 >gi|237802779|ref|YP_002887973.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT] gi|231274013|emb|CAX10806.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT] Length = 277 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 13/280 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L + L KK + QNFL+D NIL+KI ++ G V+EIG G G L+++ Sbjct: 4 SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL+ GA VI +EKD F L SQ P +EI + + RI+AN Sbjct: 64 LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+I T LL + P W+++T++ Q EV RITA+ YG L+V Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSLFADV 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F +SP+ F+P P V S V+H H +E +T+ AFG+RRK L SLK Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236 Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L ++ +L Q G R E + +E++ +I ++L D Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|281412793|ref|YP_003346872.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10] gi|281373896|gb|ADA67458.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10] Length = 260 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 135/261 (51%), Gaps = 18/261 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + KK++GQ FL D I K+I +++ V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ PIL++ S++PN +E+ +D LK ++ ++N+PY+I L Sbjct: 66 IAYEIDESLAPILRERLSKYPN-VELRFEDFLK-----AKDVPEGAICVSNIPYSITGLL 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I ++ ++ QKEVGERI A+ YG LSV+ + +FD+S Sbjct: 120 MEKIIEWK-----FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V STV+ P+ E KK F K+RKTL+ +LK + Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPFLS--IFE-- 228 Query: 254 GIETNLRAENLSIEDFCRITN 274 G++ + RAE L++E+ + Sbjct: 229 GVDLSRRAEQLTVEEIVELYE 249 >gi|147669028|ref|YP_001213846.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1] gi|189028805|sp|A5FS52|RSMA_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|146269976|gb|ABQ16968.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1] Length = 291 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 15/271 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +I D LK E+ + P +++ANLPY I Sbjct: 79 GQVIAVEVDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQNVPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A P ES+ ++ QKEV + I A+ G L++ + +++ + Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTGDM--GLLTLSIRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246 F+P P+V S ++ IP + E K+ + FG RRKTL +L + G Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +LL+ AGI+ RAE LS+E++ ++ Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKLC 283 >gi|15892945|ref|NP_360659.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7] gi|15620139|gb|AAL03560.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7] Length = 315 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 152/303 (50%), Gaps = 38/303 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 17 PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 76 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D + P+L +I +PN L II+ DALK++ Sbjct: 77 KNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKKR 135 Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 +I + II+NLPY+IGT L+ W+ S+TL+ QK Sbjct: 136 EVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 192 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP Sbjct: 193 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPS 252 Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 253 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRIA 312 Query: 274 NIL 276 IL Sbjct: 313 EIL 315 >gi|237804701|ref|YP_002888855.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273001|emb|CAX09913.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT] Length = 277 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 13/280 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L + L KK + QNFL+D NIL+KI ++ G V+EIG G G L+++ Sbjct: 4 SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL+ GA VI +EKD F L SQ P +EI + + RI+AN Sbjct: 64 LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+I T LL + P W+++T++ Q EV RITA+ Y L+V + Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYSSLTVFLSFFADV 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F +SP+ F+P P V S V+H H +E +T+ AFG+RRK L SLK Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236 Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L ++ +L Q G R E + +E++ +I ++L D Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss] gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14] gi|27151610|sp|Q9PK40|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] Length = 277 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 141/282 (50%), Gaps = 17/282 (6%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L + L KK + QNFL+D NIL+KI ++ G V+EIG G G L+++ Sbjct: 4 SSIEQLTSFLKSVNGRAKKALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFGALSEV 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRII 122 L++ GA VI +EKD F L SQ P +EI DA K + RI+ Sbjct: 64 LVSQGAN-VIALEKDPMFEESL----SQLPIDIEIT--DACKYPLASLDDKGWKGKGRIV 116 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY+I T LL + P W+++T++ Q EV RITA Y L+V + Sbjct: 117 ANLPYHITTPLLTKFFLE--CPNRWKTVTVMIQDEVARRITANPGDKDYSSLTVFLRFFA 174 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240 F +SP+ F+P P V+S V+H H ++ +T+ AFG+RRK L S Sbjct: 175 DVQYAFKVSPNCFYPKPSVSSAVVHMRVHEDFPLSGSEIDEFFALTRAAFGQRRKLLANS 234 Query: 241 LKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 LK L ++ +L G R E +S+E++ +I +L D Sbjct: 235 LKNLYPKDKVFQVLEHLGFSEKTRPETISLEEYLKIFRLLKD 276 >gi|160901464|ref|YP_001567046.1| dimethyladenosine transferase [Delftia acidovorans SPH-1] gi|160367048|gb|ABX38661.1| dimethyladenosine transferase [Delftia acidovorans SPH-1] Length = 268 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 126/258 (48%), Gaps = 12/258 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQNFL D I+ I + G +++EIG G LTQ L+ R + VIE Sbjct: 15 KHIPRKRFGQNFLTDDGIIDGIVSAIDPRPGQSMVEIGPGLMALTQPLVERLGR-LTVIE 73 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+ L+ +L++++ D LKVDF +RI NLPYNI + +LF Sbjct: 74 LDRDLAVRLR-----LHEQLDVVESDVLKVDFRAIAARLGVPKLRIAGNLPYNISSPILF 128 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + QKEV +R+ A ++ YGRL+V+ WR + + P F Sbjct: 129 HLLEQ---VDVVEDQHFMLQKEVIDRMVASPSTAAYGRLTVMLQWRYAMESVLYVPPESF 185 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S V+ +P +P + L+++ Q AF +RRK LR +L R Sbjct: 186 NPPPKVDSAVVRMVPRESPAALDAKLLEEMVQVAFSQRRKILRNTLGRWLEAKGFDG-EF 244 Query: 256 ETNLRAENLSIEDFCRIT 273 + RAE + + ++ + Sbjct: 245 DLQRRAEEVPVSEYEALA 262 >gi|312874729|ref|ZP_07734748.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b] gi|311089474|gb|EFQ47899.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b] Length = 295 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++G VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISAAHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|62184932|ref|YP_219717.1| dimethyladenosine transferase [Chlamydophila abortus S26/3] gi|81312896|sp|Q5L6H5|RSMA_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62147999|emb|CAH63750.1| dimethyladenosine transferase [Chlamydophila abortus S26/3] Length = 278 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 143/285 (50%), Gaps = 18/285 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ ++ + + + PKK + QNFL+D NIL+KI S G V+EIG G G Sbjct: 1 MSRSSPEQLSRFLAEVHG-RPKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SP 118 LT++L+ GA V+ +EKD +L++ Q P LEI DA K + + Sbjct: 60 LTEVLVNQGAH-VVALEKDS----MLEETLKQLPIHLEIT--DACKYPLSQLQDQGWQGK 112 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 R++ANLPY+I T LL P W+++T++ Q EV RITAQ YG L++ Sbjct: 113 GRVVANLPYHITTPLLRKLFLEA--PNQWKTVTVMIQDEVARRITAQPGGKEYGSLTIFL 170 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKT 236 + F +SP F P P+V S V+H N P+ L +T+ AFG+RRK Sbjct: 171 QFFVDVHYAFKVSPGCFLPKPQVASAVVHMTVKENFPLEEPLRTKFFSLTRAAFGQRRKL 230 Query: 237 LRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L +LK L + L Q R E LS++D+ ++ +L+ Sbjct: 231 LANALKDLYPKERVFEALSQLHFSDKTRPETLSLDDYLKLFYLLS 275 >gi|255311159|ref|ZP_05353729.1| dimethyladenosine transferase [Chlamydia trachomatis 6276] gi|255317460|ref|ZP_05358706.1| dimethyladenosine transferase [Chlamydia trachomatis 6276s] Length = 277 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L + L KK + QNFL+D NIL+KI ++ G V+EIG G G L+++ Sbjct: 4 SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL+ GA VI +EKD F L SQ P +EI + + RI+AN Sbjct: 64 LLSQGAN-VIALEKDPMFEGSL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+I T LL + P W+++T++ Q EV RITA+ YG L+V + Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F +SP+ F+P P V S V+H H +E +T+ AFG+RRK L SLK Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236 Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L ++ +L Q G R E + +E++ +I ++L D Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|313672734|ref|YP_004050845.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM 19672] gi|312939490|gb|ADR18682.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM 19672] Length = 266 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 8/259 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL++ + ++KI +++ V+EIG G G LT +L GA + IE D Sbjct: 16 KKSLGQHFLINQHYIEKILDAAYVSKDSRVLEIGPGCGALTVKILERGAD-LTAIEIDAV 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK +PN +II D K+D ++ NLPY + +L Sbjct: 75 LVDFLKRYLHFYPN-FKIIHSDFTKIDKSLL---DGRYNVVGNLPYYVSVPILEKCTE-- 128 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++T +FQKEV +RI + + Y LSV + +F+IS F+P+ KV Sbjct: 129 -LIENINTMTFMFQKEVADRIISTPSKKSYSSLSVFCQYFFDIKKIFNISGGNFWPTTKV 187 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 STV+HFIP + + + +F +RK L+ +L + L+++ N+RA Sbjct: 188 ESTVLHFIPKKRQFDMDEKDFLNLVKLSFSSKRKMLKNNLHSIIDTGLINEFFKRDNVRA 247 Query: 262 ENLSIEDFCRITNILTDNQ 280 E LS+EDF N L + + Sbjct: 248 EELSVEDFINFYNFLKNAK 266 >gi|57239132|ref|YP_180268.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] gi|58579080|ref|YP_197292.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] gi|93141342|sp|Q5HBC6|RSMA_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|57161211|emb|CAH58125.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] gi|58417706|emb|CAI26910.1| Dimethyladenosine transferase [Ehrlichia ruminantium str. Welgevonden] Length = 262 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 104/263 (39%), Positives = 147/263 (55%), Gaps = 8/263 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +K+I I Sbjct: 5 YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 EKD + PI I + + E I DAL +D P+++IANLPY+I T LL Sbjct: 65 EKDSRLLPIHDKIIKKFQGKYEFILSDALDIDLRNIA--KPPVKVIANLPYSIATLLLIK 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 WI + F+ S TL+FQKEV +RI AQ N+ +YG LS+LT M D P +F Sbjct: 123 WI---NYINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPEIFS 179 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253 P PKV S+VI+ + P + L+KI + F +RRK +R +LK++ + +LH Sbjct: 180 PKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEILHSL 239 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 I NLR ENLSI+ FC I N + Sbjct: 240 NIPNNLRPENLSIKQFCDIANCI 262 >gi|119870378|ref|YP_940330.1| dimethyladenosine transferase [Mycobacterium sp. KMS] gi|126437207|ref|YP_001072898.1| dimethyladenosine transferase [Mycobacterium sp. JLS] gi|226732600|sp|A3Q5I0|RSMA_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732601|sp|A1UL32|RSMA_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119696467|gb|ABL93540.1| dimethyladenosine transferase [Mycobacterium sp. KMS] gi|126237007|gb|ABO00408.1| dimethyladenosine transferase [Mycobacterium sp. JLS] Length = 294 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 20/286 (6%) Query: 1 MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT+ + ++ + P+K GQNF+ D N +++I +SG V+E+G G G Sbjct: 1 MTIRLLGRTEIRRLAKDIDFRPRKSFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115 +LT LL GA V +E D L + H NRL ++ D L + N Sbjct: 61 SLTLALLDRGAH-VTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN- 118 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 P ++ANLPYN+ L + ++ P S+ ++ Q EV ER+ A YG S Sbjct: 119 -QPTALVANLPYNVAVPALLHLLAE---FPTIRSVMVMVQAEVAERLAADPGGKDYGVPS 174 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFG 231 + +SP VF+P P+V S ++ + P P + + + AF Sbjct: 175 AKVRFYGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFA 234 Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 +RRKT R + G L A I+ + R E L+I DF R+ Sbjct: 235 QRRKTSRNAFAEWAGSGNESARRLLAASIDPSRRGETLAIADFVRL 280 >gi|313205524|ref|YP_004044701.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868] gi|312444840|gb|ADQ81195.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868] gi|315023396|gb|EFT36406.1| Dimethyladenosine transferase [Riemerella anatipestifer RA-YM] gi|325335044|gb|ADZ11318.1| Dimethyladenosine transferase (rRNA methylation) [Riemerella anatipestifer RA-GD] Length = 262 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D NI KI E+ V+E+G G G LT+ LL + ++ V E Sbjct: 3 VKAKKHLGQHFLNDENIASKIVEALEVDVQDFVLEVGPGMGVLTKYLLNKNS-EIFVAEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + LK+ + + + D LK + + FN S + +I N PYNI +++LF I Sbjct: 62 DVESIAYLKEHYPKLEEKHFV--GDFLKANLTEIFN-SEQVSVIGNFPYNISSQILFKII 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + +FQKEV ER +A+ + YG LSV+ +F +S +VF P Sbjct: 119 DNYAQIP---EMVGMFQKEVAERTSAEPRTKSYGILSVMVQAYYDVKYLFTVSENVFTPP 175 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + E L K I + F +RRK L +LK L L Sbjct: 176 PKVKSGVIRLTRNPKKGLEGNEVLFKQIVKAGFNQRRKKLSNALKGLNIPEALLTHNF-L 234 Query: 258 NLRAENLSIEDFC 270 LRAE LS+EDF Sbjct: 235 TLRAEELSVEDFI 247 >gi|115481328|ref|NP_001064257.1| Os10g0183900 [Oryza sativa Japonica Group] gi|110288720|gb|ABG65951.1| dimethyladenosine transferase, putative, expressed [Oryza sativa Japonica Group] gi|113638866|dbj|BAF26171.1| Os10g0183900 [Oryza sativa Japonica Group] gi|215704636|dbj|BAG94264.1| unnamed protein product [Oryza sativa Japonica Group] gi|218184228|gb|EEC66655.1| hypothetical protein OsI_32926 [Oryza sativa Indica Group] Length = 364 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 20/272 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I +K GQ+ L + ++ I E +G TV+EIG G GNLT+ LL G + V+ +E Sbjct: 31 GIPFEKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVE 90 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P +RL++IQ D LK D F +AN+PY I + L F Sbjct: 91 LDPRMVLELNRRFQGDPLASRLKVIQGDVLKCDLPYF------DICVANIPYQISSPLTF 144 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 +S P + ++FQ+E R+ AQ Y RLSV ++ + + + + F Sbjct: 145 KLLSHR---PIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNF 201 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251 P PKV S+V+ P P + + + F ++ KTL K+ LL Sbjct: 202 RPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKRVLELLEKNYK 261 Query: 252 -----QAGIETNLRAENLSIEDFCRITNILTD 278 Q + E +S +D +++++ D Sbjct: 262 TMQSLQLTSDAEKGEEKMSPDDVALLSSMVDD 293 >gi|332704211|ref|ZP_08424299.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio africanus str. Walvis Bay] gi|332554360|gb|EGJ51404.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio africanus str. Walvis Bay] Length = 265 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 92/258 (35%), Positives = 133/258 (51%), Gaps = 12/258 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K+ +GQNFL D NI +KI + +G TV+EIG G G LT+ L A++V+ +EKD Sbjct: 9 FAKRSLGQNFLQDENIARKIVAALELQEGDTVVEIGPGRGALTRWLDESPAQRVLALEKD 68 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + + HP R+EI+ DAL+ +E+ + S ++ I NLPYNI + L++ +S Sbjct: 69 KDLA---QQLGMVHP-RVEIVVADALRYSWEELAGVES-LKYIGNLPYNIASPLMWEIVS 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + Q EVG R+TA + YG LS +F + P VF P P Sbjct: 124 R---SPRYSRAVFMVQHEVGLRLTACPGNKSYGALSAWIQSFANVRYLFRVPPQVFRPKP 180 Query: 200 KVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG--IE 256 KV S V+ F P I P L K+ F KRRK LR L+ GE + AG I+ Sbjct: 181 KVDSAVLCFEPLAKEIRPTHPALLAKLLHICFQKRRKQLRNILRDWWGERVGTSAGEFIK 240 Query: 257 -TNLRAENLSIEDFCRIT 273 R E L+ ++F R+ Sbjct: 241 LAEARPEELTPKEFQRLA 258 >gi|218249123|ref|YP_002374494.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801] gi|226729777|sp|B7JWJ7|RSMA_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|218169601|gb|ACK68338.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801] Length = 272 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 13/269 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L +I E++ V+EIG G G LT+ LL L + ++ +E D Sbjct: 3 QPRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELD 61 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135 + L N +++ D L +D E+F +++AN+PYNI + +L Sbjct: 62 RDLCYRLAKSFGNF-NHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILE 120 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P P +E + LL QKEV +RI A S YG LSV T + + + ++ Sbjct: 121 KLLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSK 180 Query: 194 VFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S VI P P + L ++ + F RRK L +LK + ++ Sbjct: 181 AFDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDKDHLTL 240 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL Q I +RAE LS+E + +N+L Sbjct: 241 LLDQLQINPQVRAEELSLEQWIMFSNLLE 269 >gi|297157778|gb|ADI07490.1| dimethyladenosine transferase [Streptomyces bingchenggensis BCW-1] Length = 301 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 12 PADIRELAARLGVRPTKQRGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L ++ +R E++ DAL + +P ++ Sbjct: 72 E-AADRVTAVEIDDVLAAALPSTVQERLPGRADRFELVHSDALHITE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 128 ANLPYNVAVPVLLHMLDR---FPTIERTLVMVQAEVADRLAAAPGSKVYGVPSVKAAWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ + P+ + + ++ AF +RRKTLR Sbjct: 185 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRPAPLRTTATKDQVFRVIDAAFAQRRKTLRAA 244 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AGI R E L++E F I Sbjct: 245 LAGWAGSAAAAEAALTAAGISPQARGEALTVEQFAAIAE 283 >gi|304569709|ref|YP_011015.2| dimethyladenosine transferase [Desulfovibrio vulgaris str. Hildenborough] Length = 291 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 29 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 88 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + +++ DAL +E+ + + P ++I NLPYN+ + L+++ S Sbjct: 89 HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 147 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + QKEVGERI A S YG LSV TK F + PHVF P P Sbjct: 148 RA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 204 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ F P P + L ++ + F +RRK L+ L+ G LL GI Sbjct: 205 KVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLAGLGI 264 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + R E LS E F + + Sbjct: 265 DPAARPETLSPERFIALGEAVA 286 >gi|256824221|ref|YP_003148181.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547] gi|256687614|gb|ACV05416.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547] Length = 302 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K GQNF++D +++I +SG G V+E+G G G+LT LL Sbjct: 25 PARVRELADRLGVSPTKQWGQNFVIDKGTVRRIVRASGVGPGDHVVEVGPGLGSLTLALL 84 Query: 67 TLGARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + + +E D + L D + + L ++ DAL+V +P ++ Sbjct: 85 PV-VDSLTAVEVDPRLAEALPDTVAALAPERATDLRVVHADALRVTE---LPGPAPTALV 140 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYNI ++ ++ P ++ ++ Q EV ER++A S YG S W Sbjct: 141 ANLPYNIAVPVVLTFLER---FPSLRTVLVMVQLEVAERMSAAPGSKIYGAPSPKCAWYG 197 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+P V S ++ + + AF +RRKTLR +L Sbjct: 198 PTRLAGRIGRNVFWPAPNVDSGLVRIDVQPREDAGVSRQEVFACIDAAFAQRRKTLRAAL 257 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT---NILTD 278 G E L AGI+ R E L + F + N L + Sbjct: 258 AEWAGSAQQAEEALVAAGIDPRTRGEVLDVHGFIALAAARNRLRE 302 >gi|58696723|ref|ZP_00372268.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila simulans] gi|58537091|gb|EAL60211.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila simulans] Length = 313 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 152/302 (50%), Gaps = 43/302 (14%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + + PKK +GQNF+L I KKI +GSL+ VIEIG G G LT+ +L + + Sbjct: 1 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD+ + ++H + II+ DAL V E+ I P+++IANLPYNI L Sbjct: 61 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVL 118 Query: 134 LFNWISAD--------------------------------------TWPPFWESLTLLFQ 155 W++ F+ +LTL+FQ Sbjct: 119 FLKWLNNRIIEADALHVTEEELIERPVKVIANLPYNISVVLFLKWLNNIKFFTNLTLMFQ 178 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP- 214 KEV +RITA+ NS YG LSVL+ FDI P FFP PK+ S+VI P P Sbjct: 179 KEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPKIHSSVITVNPLPIPK 238 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCRI 272 LE+L ++T+ F +RRK LR SL+ + E +L A + N R ENL+IE FC + Sbjct: 239 FAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKLSGNERPENLTIEQFCLL 298 Query: 273 TN 274 N Sbjct: 299 AN 300 >gi|304391144|ref|ZP_07373096.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326027|gb|EFL93273.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 309 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 143/297 (48%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119 LG R VI IE DQ+ L +QH L ++ DAL++ D E ++P Sbjct: 66 ELGCR-VIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWTAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL------------------NPIPCCLES 221 W +A F + +VF+P P V STV+ F I + Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241 Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 + AF +RRKTLRQSL G NLL GI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAVGITPGLRAERLSVIDFTKIA 298 >gi|229495356|ref|ZP_04389091.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC 35406] gi|229317799|gb|EEN83697.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC 35406] Length = 294 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 129/260 (49%), Gaps = 8/260 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK +GQ+FL + ++ + IAES S I ++EIG G G LT+ LL LG +V +E Sbjct: 32 KVRAKKALGQHFLTNPSVARAIAESVLSWRDIPILEIGPGMGMLTKELLDLG-LEVYALE 90 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLF 135 D + L+ S + + D LK+ ++ P +I N PYNI +++ F Sbjct: 91 IDTESVEYLQRNFSWFAQGEHLTEGDVLKLPADELIPGQPQTPFVLIGNYPYNISSQIFF 150 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + QKEV ER+TA YG LSVL +F +S F Sbjct: 151 RLLELRDRVP---CCAGMLQKEVAERLTAPPGGRDYGILSVLLRCWYHCEYLFTVSELDF 207 Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV V+ I + +P E KK+ + AF +RRKTLR SL+ L E + Sbjct: 208 DPPPKVKGGVLRLIRNDRKELPVDEELFKKVVKAAFSQRRKTLRNSLRTLFPEGY-DFSD 266 Query: 255 IETNLRAENLSIEDFCRITN 274 +LRAE L +ED+ R+T Sbjct: 267 PIFSLRAERLDVEDYIRLTQ 286 >gi|327262022|ref|XP_003215825.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Anolis carolinensis] Length = 345 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ ++ +K+ K + QNFLLDL + KIA S+G+L V E+G GPG +T+ + Sbjct: 14 PLPTIGEVIKLFKLKAVKQLSQNFLLDLRLTDKIARSAGNLKDAHVCEVGPGPGGITRAI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++++EKD +F P L+ +S P ++ ++ D L + F + Sbjct: 74 LNAGVAELLLVEKDPRFIPGLQMLSEAAPGKVRVVHGDILTYKLGQAFPNHLIKNWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I II NLP+++ T L+ W+ + LTL FQKEVGER+TA + Sbjct: 134 PDIHIIGNLPFSVSTPLIIKWLENISKRDGPFRYGRTQLTLTFQKEVGERLTASTGTRQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS+++ + F I F P P V TV+HF P + P I + ++K+ Q F Sbjct: 194 SRLSIMSQYLCTVHKCFTIPGKAFVPKPDVDVTVVHFTPLVQPKIEQPFKLVEKVVQSVF 253 Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK ++ L E +L A ++ LR LS+ F + ++ D Sbjct: 254 QFRRKYCHHGIRILFPEATRLEKAEQMLMLADVDPTLRPTQLSMFHFKNLCDVYRKMCD 312 >gi|289432297|ref|YP_003462170.1| dimethyladenosine transferase [Dehalococcoides sp. GT] gi|288946017|gb|ADC73714.1| dimethyladenosine transferase [Dehalococcoides sp. GT] Length = 291 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 15/271 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +I D LK E+ P +++ANLPY I Sbjct: 79 GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + + ++ A P ES+ ++ QKEV + I A+ G L++ + +++ + Sbjct: 138 SAVFRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTGDM--GLLTLSVRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246 F+P P+V S ++ IP + E K+ + FG RRKTL +L + G Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273 +LL+ AGI+ RAE LS+E++ ++ Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKLC 283 >gi|94985245|ref|YP_604609.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300] gi|118600863|sp|Q1IZ94|RSMA_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94555526|gb|ABF45440.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300] Length = 281 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 18/277 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ +L+ + + P K +GQNFL+D NIL+ IA++ G+ G+ V+E+G G G LT+ L Sbjct: 13 SPARVRDLLTRHGLRPTKSLGQNFLIDGNILRAIAQAGGAAPGVPVLEVGPGLGVLTREL 72 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 GA V +EKD++ P+L + + ++++ DAL+ D+ + R+IANL Sbjct: 73 AARGAH-VTALEKDERLRPVLAETLAGQD--VQVVWGDALEFDYASL---PAGTRVIANL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I LL ++ A P S T+L QKEV R+ A+ +YG LS L Sbjct: 127 PYYITGPLLARFMQA----PGIISATVLVQKEVAGRLAARPGEDNYGFLSALAALYGTVQ 182 Query: 186 MMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-- 242 + D+ F P+P VTS+V+ P P + K + A RRKTLR +L+ Sbjct: 183 HVRDVPKGAFLPAPDVTSSVVRLDFDRARPAPEP--AFLKFVEAALHHRRKTLRNNLRLA 240 Query: 243 RLGGE---NLLHQAGIETNLRAENLSIEDFCRITNIL 276 GGE L AG+ ++RAE++ +ED + L Sbjct: 241 GFGGEAVGEALMAAGLRPDVRAEDVPLEDLRVLARRL 277 >gi|147791996|emb|CAN77505.1| hypothetical protein VITISV_017803 [Vitis vinifera] Length = 350 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 14/242 (5%) Query: 15 SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 HY + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + Sbjct: 19 KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 VI +E D + L+ P NRLE+IQ D L+ D F +AN+PY I Sbjct: 78 VIAVEVDPRMVLELQRRFQGTPLSNRLEVIQGDVLRCDLPYF------DICVANIPYQIS 131 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F ++ P + ++FQ+E R+ AQ Y RLSV T + + + + Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKV 188 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 + F P PKV S+V+ P P + + + F ++ KTL ++ +LL Sbjct: 189 GKNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 248 Query: 251 HQ 252 + Sbjct: 249 EK 250 >gi|321476312|gb|EFX87273.1| hypothetical protein DAPPUDRAFT_307097 [Daphnia pulex] Length = 332 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 90/295 (30%), Positives = 144/295 (48%), Gaps = 23/295 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ +L+ Y++ K + QNFL+D + K+ ++G + V E+G G G+LT+++ Sbjct: 12 PLPAVRDLLNLYRLQAVKQLSQNFLIDPKLTSKLVSAAGKITNGYVCEVGPGAGSLTRVI 71 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L+ K++V+EKD++F P L+ ++ +R+ I+ D L + F + Sbjct: 72 LSRNVNKLVVVEKDKRFQPPLEMLAEASGDRMSIVWGDVLSHNLTNAFPEESKRDWTDQP 131 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I II NLP+NI T L+ W+ A + W +TL FQKEV ER+ A+ S Sbjct: 132 PNIHIIGNLPFNIATPLIIRWLKAISERSNAWVHGRVPMTLTFQKEVAERMVAKIGSRER 191 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ F I F P P V V+HF P P I + ++K+ + F Sbjct: 192 CRLSVMVQHLCYVEHKFTIPGKAFVPKPNVDVGVVHFTPLATPKIQAPFKLVEKVARNTF 251 Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 R+K R+ L+ L LL A ++ LR LSIE+F RI + Sbjct: 252 SFRQKYCRRGLETLFPSSMRDEQTHKLLQLADVDGTLRPFELSIEEFNRICQAYS 306 >gi|238795194|ref|ZP_04638781.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909] gi|238725481|gb|EEQ17048.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909] Length = 232 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G LT+ + + VIE D+ L Q ++L I Q DA+KV+F Sbjct: 1 MVEIGPGLGALTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFS 58 Query: 111 KFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + + P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS Sbjct: 59 ELAELAGQPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSK 115 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQ 227 YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + L ++T Sbjct: 116 AYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLSRVTT 175 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +AF +RRKT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 176 QAFNQRRKTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 225 >gi|89890027|ref|ZP_01201538.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7] gi|89518300|gb|EAS20956.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7] Length = 280 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 85/268 (31%), Positives = 134/268 (50%), Gaps = 14/268 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D ++ ++IA+ ++EIG G G LT+ ++ KV +E Sbjct: 17 GVTAKKHLGQHFLKDEDVAQRIADVLSYDGYDQILEIGPGTGVLTKHVIRKN-MKVTALE 75 Query: 78 KDQQFFPILKDISS------QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D + LK + ++I+ D LK D ++ + S II N PYNI T Sbjct: 76 LDSESVIYLKHSFPLEHVKIVNDQTFQVIEADFLKKDLKEIYGEQS-FAIIGNFPYNIST 134 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F I P + + FQKEV +RI A S YG LSVL +A +F + Sbjct: 135 QIVFKTIENREQIPEFGGM---FQKEVAQRICAPHGSKTYGILSVLAQAYYEADYVFTVG 191 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P VF P P+V S V+ N + C L+++ + AF +RRKTLR SLK L + Sbjct: 192 PEVFDPPPRVDSGVLFLKRRDNYDNLTCSYSILRQVVKLAFQQRRKTLRNSLKTLNLPDE 251 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 + + I +LR E +S++ F + + Sbjct: 252 MREKDI-FSLRPEQISVDAFVELATEIE 278 >gi|46200223|ref|YP_005890.1| dimethyladenosine transferase [Thermus thermophilus HB27] gi|62900548|sp|Q72GC7|RSMA_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|46197851|gb|AAS82263.1| dimethyladenosine transferase [Thermus thermophilus HB27] Length = 271 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 143/282 (50%), Gaps = 19/282 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ S++ +L + + K GQNFL+ L++I E++ G V E+G G G Sbjct: 1 MSKLASPQSVRALLERHGLFADKRFGQNFLVSEVHLRRIVEAARPFTG-PVFEVGPGLGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V IEKD + P+L++ S P + ++ DAL +E+ S Sbjct: 60 LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYPWEEVPQGS---L 113 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T L+ + + L L QKEV ER+TA+ +P YG L++ Sbjct: 114 LVANLPYHIATPLVTRLLKTGR----FARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 A +FD+ P FFP PKV S+++ P P L ++ + AFGKRRKTL + Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGAP---DDPGLFRLVEAAFGKRRKTLLNA 226 Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L G E L G+ +RAE L +E F R+ L Sbjct: 227 LAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 >gi|320353106|ref|YP_004194445.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032] gi|320121608|gb|ADW17154.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032] Length = 304 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 129/283 (45%), Gaps = 18/283 (6%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 K +L + P K +GQNFL+ ++I + +G VIE+G G G LT+ L Sbjct: 4 QPTKQLLKRQGLAPHKKLGQNFLVHERTPRRIVDLAGLQPDDQVIEVGVGLGALTRPLAA 63 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A KVI +E D ++ P +E++ D LKVDF ++I+ANLPY Sbjct: 64 AVA-KVIGLEADSGIIRFHQE-QQDLPANVELVHADVLKVDFAPLVEPGKRLKIVANLPY 121 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + LF I F ++ QKEV +R+ AQ S YG +VL + + Sbjct: 122 SISSPFLFRLIDQAELMDF---AVVMLQKEVAQRLMAQPGSKEYGAPTVLLAACAEVRPL 178 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC------CLESLKKITQEAFGKRRKTLRQSL 241 ++P F P PKV S VI H P + +I AFG+RRKTL L Sbjct: 179 LAVNPAEFHPRPKVDSLVIRIDFHPRPKRVQDLGAFDRKLFTRIVHAAFGQRRKTLLNGL 238 Query: 242 K-------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + + AG+ + RAE LS+E F +T L+ Sbjct: 239 AAARVLDEKEKLAEAILAAGVSPSDRAETLSLEQFVTLTRELS 281 >gi|145219843|ref|YP_001130552.1| dimethyladenosine transferase [Prosthecochloris vibrioformis DSM 265] gi|145206007|gb|ABP37050.1| dimethyladenosine transferase [Chlorobium phaeovibrioides DSM 265] Length = 270 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 137/268 (51%), Gaps = 11/268 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ H +I KK +GQNFL D NI +KI +SG+L ++EIG G G LT+ + L Sbjct: 1 MRVEYKHTEIAVKKKLGQNFLTDSNITRKIVAASGALPTERILEIGPGFGALTKEISALT 60 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +EKD+ ++ ++P+ L++I+ D L +D E+ P+R++ N+PY+I Sbjct: 61 PH-FTAVEKDRALAAFIRR---EYPS-LQMIEADFLDLDLEELSTDG-PLRVLGNIPYSI 114 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T ++F + A S TL+ Q EV R+TA+ ++ YG L+V +F Sbjct: 115 TTPIIFKLLEAR---HNILSATLMMQHEVALRLTAKPSTKEYGILAVQLQSFCTVRYLFK 171 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + VF P P V S VI P + ++ + AF +RRKTL +L+ + Sbjct: 172 VGRKVFKPQPNVDSAVISMTPKKESPVENPLAYRQFVRTAFHQRRKTLLNNLRDSYDLSS 231 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L + LRAE LSIE+F + + L Sbjct: 232 LTPETL--KLRAEALSIEEFITLFSQLR 257 >gi|258647596|ref|ZP_05735065.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259] gi|260852403|gb|EEX72272.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259] Length = 271 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 134/268 (50%), Gaps = 16/268 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL + IA++ + + V+E+G G G LTQ LL G R+ V+E Sbjct: 4 VKPKKNLGQHFLTDLPTAQAIADTIDACPDLPVLEVGPGMGMLTQFLLPKG-RETKVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + + I+ +D L++D K F P + N PY+I +++ F + Sbjct: 63 DRESVAYLLNRWPALADN--ILGEDFLRMDLSKVFG-GRPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P T + QKE ERI A + YG LSVL +F + PHVF P Sbjct: 120 DFKDYIP---CCTGMIQKEAAERIAAPPGTKAYGILSVLLQRWYSVEYLFTVEPHVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE------NLLH 251 PKV S V+ + + C + L+++ + +F +RRK LR SLK L + +L Sbjct: 177 PKVRSAVVRMTRNDVTDCGCNEQLLRRVVKTSFNQRRKMLRGSLKPLFAQLNNEQNKVLD 236 Query: 252 QAG--IETNLRAENLSIEDFCRITNILT 277 + +R E LS+E F +TN + Sbjct: 237 HTDFLLPLTMRPEQLSVEQFVDLTNRVE 264 >gi|16329260|ref|NP_439988.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803] gi|27151564|sp|P72666|RSMA_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|1651740|dbj|BAA16668.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803] Length = 284 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 87/277 (31%), Positives = 134/277 (48%), Gaps = 21/277 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDG--------ITVIEIGAGPGNLTQMLLTLGA 70 P+K GQ++L L+ I ++ G ++EIG G G LT+ LL G Sbjct: 3 FRPRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATG- 61 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLP 126 V+ +E D+ L+ Q N L +++ D L +D +++AN+P Sbjct: 62 NPVVAVELDRDLCLKLRKKLGQRENFL-LLEGDVLILDLNALLQDFPQFSPLNKVVANIP 120 Query: 127 YNIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 YNI + +L + P P +E++ LL QKE+ ER+TAQ ++ YG LSV + + Sbjct: 121 YNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLARV 180 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + D+ P F P PKV S VI P+ +P L ++ F RRK LR +LK Sbjct: 181 DWIVDVPPKAFTPPPKVDSAVIRLTPYPVEQLPGDRRLLDQLLCLGFANRRKMLRNNLKG 240 Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276 L LL Q + + RAE+LS+E + +TN+L Sbjct: 241 LIAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277 >gi|333029846|ref|ZP_08457907.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides coprosuis DSM 18011] gi|332740443|gb|EGJ70925.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides coprosuis DSM 18011] Length = 262 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 8/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKKY+GQ+FL D I + IA + + I ++E+G G G LTQ LL R + V++ Sbjct: 4 VKPKKYLGQHFLKDQKIAQDIANTVDLIPEIPILEVGPGMGVLTQYLLP-KERPIKVVDL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + N +II+ D L ++ + F+ P + N PYNI +++ F + Sbjct: 63 DTESIFYLYEEFPALKN--DIIEADFLAMNLNQVFD-GKPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A+ YG LSVL +F +S VF P Sbjct: 120 DNKEIIPL---CTGMIQKEVAERIAAKPGKKTYGILSVLIQAWYDVEYLFTVSEKVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C + K++ + F +RRKTLR S+K + G+N Sbjct: 177 PKVKSAVISMKRNNVSALGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKNSPITEDDIF 236 Query: 258 NLRAENLSIEDFCRITNILT 277 R E LS+E+F +ITN++ Sbjct: 237 MKRPEQLSVEEFIKITNLVE 256 >gi|325912354|ref|ZP_08174750.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D] gi|325475825|gb|EGC78995.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D] Length = 295 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 25/299 (8%) Query: 3 MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 M+N + I++ Y + KK +GQNFL+DL I+KKI S+G ++ VIEIG G Sbjct: 1 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVECSQVIEIGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107 G+LT+ LL GA KV+ E D IL ++ +Q N R II D LK Sbjct: 61 IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D +F+++ PI ++ANLPY I T ++ + + P LTL+ QKEV ERI+A Sbjct: 120 DIADYFDVNQPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226 S YG L++ F++ F PSPKV S V+ P + + E L +I Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236 Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + AF +RRKTL +LK L + LL+ +++N+R E LSI + ++ + + + Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295 >gi|298492284|ref|YP_003722461.1| dimethyladenosine transferase ['Nostoc azollae' 0708] gi|298234202|gb|ADI65338.1| dimethyladenosine transferase ['Nostoc azollae' 0708] Length = 277 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 13/268 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P+K Q++L L I +++ + V+EIG G G LT+ LL L ++ +E Sbjct: 2 VQPRKQFAQHWLKSEKALNTIVKAAECQETDRVLEIGPGTGILTRRLLPL-VHSLLAVEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLL 134 D +L + N L ++Q D L ++ F +++AN+PYNI ++ Sbjct: 61 DPDLCKLLVKQLGERENFL-LLQGDFLTLNVPSQLTAFSKFQKQNKVVANIPYNITGPII 119 Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + A P ++S+ LL QKEV ER+ A+ S +G LS+ + ++ + Sbjct: 120 EKLLGTIASPNPEPYDSIVLLVQKEVAERLYAKPGSRSFGALSLRVQYLADCELICSVPA 179 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F+P PKV S V+ +P IP + L+ + + FG +RK LR +L+ + + Sbjct: 180 GAFYPPPKVDSAVVRLLPRQIEIPVNDPKKLENLVKLGFGSKRKMLRNNLQSVVDRDRLT 239 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNI 275 LL Q I +RAE+LS+ + + N+ Sbjct: 240 QLLEQLEINPQVRAEDLSVSQWVTLVNL 267 >gi|323697933|ref|ZP_08109845.1| dimethyladenosine transferase [Desulfovibrio sp. ND132] gi|323457865|gb|EGB13730.1| dimethyladenosine transferase [Desulfovibrio desulfuricans ND132] Length = 260 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 13/259 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK +GQNFL D NI +KI ++ G ++IEIG G G LT+ L+ GAR + V+E Sbjct: 8 HRAKKSLGQNFLTDRNICRKIVDALAPTPGASIIEIGPGQGALTEHLVETGAR-LRVVEM 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D L++ LE+I+ DALK + + N P+RII NLPYN+G++L+++ + Sbjct: 67 DDDLADRLEERWPD----LEVIRADALKFPWAEL-NAEGPVRIIGNLPYNVGSKLIWDIV 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S E + Q EV R+TA+ S YG L+ + +F + P VF P Sbjct: 122 SRVE---TLERAVFMVQHEVALRLTAEPGSKAYGGLTAWVRNFSDTRYLFKVPPTVFRPR 178 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAG 254 PKV S V+ F P P + L ++ + F +RRK + LK+ E + G Sbjct: 179 PKVDSAVVRFDPLPAGARPEDPDRLAELIKLLFQQRRKQISTILKKRMTPAVEQWFREEG 238 Query: 255 IETNLRAENLSIEDFCRIT 273 + +LR ENL+ F ++ Sbjct: 239 VSPSLRPENLTPTQFRALS 257 >gi|149277463|ref|ZP_01883604.1| dimethyladenosine transferase [Pedobacter sp. BAL39] gi|149231696|gb|EDM37074.1| dimethyladenosine transferase [Pedobacter sp. BAL39] Length = 260 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 124/261 (47%), Gaps = 10/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D I +I + D V+E+G G G L+ +LL +I+ Sbjct: 4 VRAKKHLGQHFLTDKKIAARIVDGLVHTDQYREVLEVGPGMGILSDILLDRDYLDTFLID 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + LKD Q RL I D L +D F +I N PYNI +++LF Sbjct: 64 IDVESYEFLKDKYPQLGARL--INGDFLALDLSSIF--KGKYAVIGNFPYNISSQILFKI 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + +FQKEV ER ++ + YG LSVL +F + P F P Sbjct: 120 LDNREH---VVEMVGMFQKEVAERCASKSGTKEYGILSVLIQAYYDIEYLFTVKPGTFNP 176 Query: 198 SPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI ++ +PC + + + F +RRKTLR +L + ++ + Sbjct: 177 PPKVNSGVIRLSRNKIDTLPCDEKLFWRTVKAGFNQRRKTLRNALSGVVSKDRMDDHFF- 235 Query: 257 TNLRAENLSIEDFCRITNILT 277 + RAE LS++ F +T LT Sbjct: 236 FDKRAEQLSVDQFIELTQHLT 256 >gi|165933603|ref|YP_001650392.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Rickettsia rickettsii str. Iowa] gi|165908690|gb|ABY72986.1| dimethyladenosine transferase [Rickettsia rickettsii str. Iowa] Length = 315 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +++ P + GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 17 PSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 76 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 77 KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 135 Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 I + II+NLPY+IGT L+ W+ S+TL+ QK Sbjct: 136 EAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 192 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP+ Sbjct: 193 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPLS 252 Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 253 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRIA 312 Query: 274 NIL 276 IL Sbjct: 313 EIL 315 >gi|296532229|ref|ZP_06894977.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957] gi|296267446|gb|EFH13323.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957] Length = 235 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 104/232 (44%), Positives = 146/232 (62%), Gaps = 7/232 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG GPG LT+ LL A V +E D++ L+++S+ +P RL I++ DAL++D Sbjct: 1 MLEIGPGPGGLTRALLDSPAAHVTAVELDRRAIAALEELSAAYPGRLSIVEGDALRIDAA 60 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 +P RI+ANLPYN+GT LL W+ +ESLTL+FQ+EV ERITA ++ H Sbjct: 61 TLL--PAPRRIVANLPYNVGTALLIGWLHRAE---LFESLTLMFQQEVAERITAAPDTEH 115 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEA 229 YGRL+VL+ WR + M + P F P PKV S ++H +PH P P + +L+++T A Sbjct: 116 YGRLAVLSQWRCQCRMTLRLPPGAFSPPPKVWSAIVHLVPHGTVPDPALMAALERVTAAA 175 Query: 230 FGKRRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 FG+RRK LR SLK LG E LL AGIE RAE LS+ +F R+ +L + Sbjct: 176 FGQRRKMLRSSLKTLGRPEALLEAAGIEATRRAETLSVAEFERLATLLLAQE 227 >gi|27151589|sp|Q92GV0|RSMA_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 301 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 152/303 (50%), Gaps = 38/303 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D + P+L +I +PN L II+ DALK++ Sbjct: 63 KNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKKR 121 Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 +I + II+NLPY+IGT L+ W+ S+TL+ QK Sbjct: 122 EVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPS 238 Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRIA 298 Query: 274 NIL 276 IL Sbjct: 299 EIL 301 >gi|160943226|ref|ZP_02090462.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii M21/2] gi|158445465|gb|EDP22468.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii M21/2] Length = 311 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ + Y K GQNF+++ I KI ++SG VIEIG G G Sbjct: 29 MPELTDLSVIRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGV 88 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LT+ L A KV+ IE D++ P+L + + N +++ D LKVD + Sbjct: 89 LTKELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM 146 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + ++ + ESLT++ QKE +R+ A + +S Sbjct: 147 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAVPGTRASSAISCA 203 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + + +MF +P F+P+PKVTS V+ P + + + AFG+RRK Sbjct: 204 VNYYATSKLMFTAAPGSFYPAPKVTSAVVRMDIRPTPAVQVEDEAGYFALVRAAFGQRRK 263 Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 T +L + + AG + +R E L++EDF +I L Sbjct: 264 TAANAIAGGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 310 >gi|269836868|ref|YP_003319096.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM 20745] gi|269786131|gb|ACZ38274.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM 20745] Length = 293 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 17/273 (6%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + + +L + P K +GQNFL D I+++IAE + V+E+G G G LT+ L Sbjct: 18 PTFRDLLEEIGVRPSKALGQNFLHDTRIVQRIAEVADLGPDDLVVEVGPGLGILTRELAR 77 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A VI +E D + L++ + I++ D L ++ + P ++ANLPY Sbjct: 78 R-AGTVIAVELDTRLADHLRESLE--LENVRIVEGDILDLNLAELAG-KRPYHVVANLPY 133 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 ++ ++ + + +D P + ++ Q+EV ERI A+ P L+V + + Sbjct: 134 SVAAAVIEHVLESDHRPG---RMVVMVQREVAERIVARP--PEMSVLAVAVQFYAVPRIA 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK--- 242 F + P F P P+V S V+ + NP + + + F +RRK L +L Sbjct: 189 FRVGPGAFVPRPRVDSAVLRLDINPNPPLSGAERAAFFTLVRAGFSQRRKRLANALADAL 248 Query: 243 ---RLGGENLLHQAGIETNLRAENLSIEDFCRI 272 + L AGI+ + RAE LS+E++ + Sbjct: 249 DLPKSVVGERLTAAGIDPDRRAETLSVEEWLAM 281 >gi|206900710|ref|YP_002251201.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12] gi|206739813|gb|ACI18871.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12] Length = 279 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 150/279 (53%), Gaps = 13/279 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++S + IL I KK +GQNFL+D NILKKI ++ T++E+G G G Sbjct: 1 MNLTSRSELI-EILQKNNIFLKKSLGQNFLVDKNILKKIIDALEISKEDTILEVGCGVGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L +++VI +E D++F PIL+++ +PN EII +D +K+D K ++ P + Sbjct: 60 LTLELAKR-SKRVIGVEIDKRFKPILENLLKDYPNT-EIIFEDIMKIDLSKI--VTPPYK 115 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + NLPY I L + P+ + ++ QKE+ ER+T+ + Y LS+L Sbjct: 116 LAGNLPYYISGSFLGEYFQK---GPYASLMVIMLQKEMAERLTSSPGNKKYSPLSILLHI 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ 239 ++ + P FFP+P+V S ++ + E K+ +E+F +RRK L Sbjct: 173 TYSYEVISKVPPSCFFPAPEVESVILRLKLNPKLDKIHNKELFFKLLKESFSQRRKFLLN 232 Query: 240 SLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITN 274 +L+R E L + I++ +RAE+LS ED+ ++N Sbjct: 233 NLQRAFPEIDWKTLFTELNIDSKIRAEDLSPEDYITLSN 271 >gi|326915765|ref|XP_003204183.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Meleagris gallopavo] Length = 350 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 140/301 (46%), Gaps = 27/301 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ + + +K + QNFLLDL + KI +G L V E+G GPG +T+ + Sbjct: 14 PLPTVGEIIKLFSLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G ++++++EKD +F P L+ +S P ++ I+ D L E+ F + Sbjct: 74 LNAGVQQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMERAFPNHLKKNWEDEP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I II NLP+N+ T L+ W+ + +TL FQKEV ER+TA Sbjct: 134 PNIHIIGNLPFNVSTPLIIKWLENVSKRDGPFVYGRTQMTLTFQKEVAERLTANTGGKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS+++ F I F P P V V+HF P + P I E ++K+ Q F Sbjct: 194 SRLSIMSQHLCTVENCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVF 253 Query: 231 GKRRKTL----------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 RRK R+ LK+ E L+ A ++ LR L++ F + N Sbjct: 254 QFRRKYCCRGVEILFPERERLKK--TEQLMMAADVDPTLRPVQLTMSHFRNLCNTYRKMC 311 Query: 281 D 281 D Sbjct: 312 D 312 >gi|313204313|ref|YP_004042970.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4] gi|312443629|gb|ADQ79985.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4] Length = 281 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 93/261 (35%), Positives = 130/261 (49%), Gaps = 10/261 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ KKY+GQ+FL D+ I +IA+S +V+EIG G G LTQ LL + +E Sbjct: 24 QVRAKKYLGQHFLKDMGIAGRIADSLILDGKTSVLEIGPGMGVLTQFLLQNPLIDLTAVE 83 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++ L QH +L +I+ D LK+D + F +I N PYNI +++ F Sbjct: 84 LDKESVEYLH----QHYPQLNVIEADFLKLDLKTIF--PDKFCVIGNFPYNISSQIFFKM 137 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P L + QKEV ERI A S YG LSVL K +F + HVF P Sbjct: 138 LDNKDSIP---CLAGMIQKEVAERIAAPAGSKTYGILSVLMQAYYKIEYLFTVHEHVFDP 194 Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI F + + I C + K + + +F +RRKTLR SLK L A Sbjct: 195 PPKVKSAVIRFTRNEVSKIDCDEQLFKAVVKTSFNQRRKTLRNSLKPLVEAGHPMYADPI 254 Query: 257 TNLRAENLSIEDFCRITNILT 277 +LR E L + F +T + Sbjct: 255 FDLRPERLDVAAFIDLTKRVE 275 >gi|238650988|ref|YP_002916844.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic] gi|259494257|sp|C4K2J5|RSMA_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|238625086|gb|ACR47792.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic] Length = 301 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 63 KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121 Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 I + II+NLPY+IGT L+ W+ S+TL+ QK Sbjct: 122 EAKPITNRRANDIGESKAIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP+ Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPLS 238 Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRIA 298 Query: 274 NIL 276 IL Sbjct: 299 EIL 301 >gi|118595197|ref|ZP_01552544.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181] gi|118440975|gb|EAV47602.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181] Length = 259 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D +I+K+I + ++EIG G G LT+ +L + VIE Sbjct: 2 IKAKKKFGQNFLTDTSIIKEIINHINPKEKDRILEIGPGMGALTKPIL-SKISHIDVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D L + +++ I+QDD L + E + RII NLPY I T ++ I Sbjct: 61 DSDMVAHLNKTVA--DSQISIMQDDILLMSKEALRSFD---RIIGNLPYYISTEIMIKMI 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +FQ+EV ERI A + YGRLSVL + A ++ I F P+ Sbjct: 116 ---DLIDSKKDFHFMFQREVAERIAAVPGTKCYGRLSVLIQYFFTAEILLHIPADAFTPA 172 Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S+ + IP + +++ KK+ + AF ++RKT++ + K + E + GI Sbjct: 173 PKIQSSFVRLIPKKDFDLTFKDMDNFKKVIKLAFHQKRKTIKNNFKNILDEKDFNSLGIN 232 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 RAENLSI F I N + N+ Sbjct: 233 PQDRAENLSISTFINIENYMYGNK 256 >gi|117927388|ref|YP_871939.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B] gi|166221640|sp|A0LR93|RSMA_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|117647851|gb|ABK51953.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B] Length = 290 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P+K GQ+F++D +L+KIA + +EIG G G+LT + L Sbjct: 16 AADIRELARSAGVRPRKTFGQHFVVDPGVLRKIARYAELSSEDIALEIGPGFGSLTLV-L 74 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 R+++ +E D+ +L + +RL ++ D L++ P ++ Sbjct: 75 LPLVRRLLAVEIDRVLAAVLPETIRRRCPAFADRLVVVHGDVLRLTT----LPDDPTVLV 130 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ + + ++ Q+EV ER+ A SP YG S+ W Sbjct: 131 ANLPYNVAVPAVLRVFERFS---TVTRTVIMVQREVAERLCADPGSPAYGAPSIKLRWYG 187 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241 +A ++ +S VF+P P+V S V+ P+P ++ + AF +RRK LR++L Sbjct: 188 RARIVGSVSADVFWPRPQVESAVVRIDRQPPPVPGVDRAAVFAVIDAAFAQRRKMLRRAL 247 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E + AG+ R E L++ DF R+ Sbjct: 248 SGWAGSAQAAEERILAAGLRPTDRGEALTLADFIRLAQA 286 >gi|257062209|ref|YP_003140097.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802] gi|256592375|gb|ACV03262.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802] Length = 272 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 129/269 (47%), Gaps = 13/269 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L +I E++ V+EIG G G LT+ LL L + ++ +E D Sbjct: 3 QPRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELD 61 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135 + L N +++ D L +D E+F +++AN+PYNI + +L Sbjct: 62 RDLCYRLAKSFGNF-NHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILE 120 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P P +E + LL QKEV +RI A S YG LSV T + + + ++ Sbjct: 121 KLLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSK 180 Query: 194 VFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S VI P P + L ++ + F RRK L +LK + + Sbjct: 181 AFDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDRDHLTL 240 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL Q I +RAE LS+E + +N+L Sbjct: 241 LLDQLQINPQVRAEELSLEQWIMFSNLLE 269 >gi|330998260|ref|ZP_08322085.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT 11841] gi|329568649|gb|EGG50450.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT 11841] Length = 283 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 93/275 (33%), Positives = 132/275 (48%), Gaps = 24/275 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL I + IA++ + GI V+E+G G G +TQ L+ G R V V+E Sbjct: 4 VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLVGKG-RPVKVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L+ Q II+DD LK+ E+ F P + N PYNI +++ F + Sbjct: 63 DFESVAYLRANYPQLEEN--IIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYSVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---------- 247 PKV S VI + + C K++ + F +RRK LR S++ + + Sbjct: 177 PKVKSAVIRMTRNSTTDLGCNERLFKQVVKTTFNQRRKVLRNSIRPVLADADHKARQEGR 236 Query: 248 -----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 A I R E LS+ DF +TN +T Sbjct: 237 LPKDHAEFLSAEI-FGRRPEQLSVADFINLTNAIT 270 >gi|116074644|ref|ZP_01471905.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9916] gi|116067866|gb|EAU73619.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9916] Length = 298 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 81/275 (29%), Positives = 120/275 (43%), Gaps = 11/275 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D +L I E+SG V+E+G G G LT+ LL A V +E Sbjct: 26 GHTARKRFGQHWLRDERVLDHILEASGLQADDRVLEVGPGRGALTERLLRSPAAAVHAVE 85 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+D R + + D L V + +++AN+PYNI L+ Sbjct: 86 LDRDLVAGLRDRFGS-DGRFSLREGDVLDVPL-TLPDEGLATKVVANIPYNITGPLMERL 143 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I P P ++ L LL QKEV ERI A+ + LSV + + + + P F Sbjct: 144 IGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLAQCSTVCPVPPRCF 203 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 P PKV S VI P P P ++ + ++AF RRK LR +L L L Sbjct: 204 QPPPKVQSEVIRLDPLPMQQRPEPALARRVESLLKQAFLARRKMLRNTLAGLCPPEQLQM 263 Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 AGI+ R + ++ + + L A Sbjct: 264 LAAAAGIDLQQRPQEVAPAAWVELARGLNQADSAA 298 >gi|311233807|gb|ADP86661.1| dimethyladenosine transferase [Desulfovibrio vulgaris RCH1] Length = 300 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 38 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 97 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + +++ DAL +E+ + + P ++I NLPYN+ + L+++ S Sbjct: 98 HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 156 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + QKEVGERI A S YG LSV TK F + PHVF P P Sbjct: 157 RA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 213 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ F P P + L ++ + F +RRK L+ L+ G LL GI Sbjct: 214 KVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLAGLGI 273 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + R E LS E F + + Sbjct: 274 DPAARPETLSPERFIALGEAVA 295 >gi|225437553|ref|XP_002276165.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 350 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 14/242 (5%) Query: 15 SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 HY + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + Sbjct: 19 KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 VI +E D + L+ P NRL++IQ D L+ D F +AN+PY I Sbjct: 78 VIAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLPYF------DICVANIPYQIS 131 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F ++ P + ++FQ+E R+ AQ Y RLSV T + + + + Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKV 188 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 + F P PKV S+V+ P P + + + F ++ KTL ++ +LL Sbjct: 189 GKNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 248 Query: 251 HQ 252 + Sbjct: 249 EK 250 >gi|186685005|ref|YP_001868201.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102] gi|226732604|sp|B2J0A6|RSMA_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|186467457|gb|ACC83258.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102] Length = 286 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 19/276 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSL------DGITVIEIGAGPGNLTQMLLTLGARK 72 I P+K Q++L L I +++ G ++EIG G G LT+ LL L + Sbjct: 2 IRPRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPL-VQS 60 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYN 128 +I +E D+ +L + N L ++Q D L +D F N P +++AN+PYN Sbjct: 61 LIAVEIDRDLCQLLSKQLGKTENFL-LLQGDFLTLDLPSYLVAFPNFQKPNKVVANIPYN 119 Query: 129 IGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 I ++ + A+ P ++S+ LL QKEV ER+ A+ S +G LSV + + + Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKTFGALSVRVQYLAECEL 179 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG 245 + + F P+PKV S V+ P IP L+ + FG +RK LR +L+ + Sbjct: 180 ICTVPASAFHPAPKVDSAVVRLRPRKIEIPALNPRQLETFLKLGFGAKRKMLRNNLQSVI 239 Query: 246 GEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277 + LL Q I RAE++S++ + + N L Sbjct: 240 ERDRLSHLLEQLKINPQARAEDISVQQWVILANELA 275 >gi|62900547|sp|Q72B41|RSMA_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|46449624|gb|AAS96274.1| dimethyladenosine transferase [Desulfovibrio vulgaris str. Hildenborough] Length = 266 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 4 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + +++ DAL +E+ + + P ++I NLPYN+ + L+++ S Sbjct: 64 HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 122 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + QKEVGERI A S YG LSV TK F + PHVF P P Sbjct: 123 RA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 179 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ F P P + L ++ + F +RRK L+ L+ G LL GI Sbjct: 180 KVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLAGLGI 239 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + R E LS E F + + Sbjct: 240 DPAARPETLSPERFIALGEAVA 261 >gi|300728350|ref|ZP_07061714.1| dimethyladenosine transferase [Prevotella bryantii B14] gi|299774386|gb|EFI71014.1| dimethyladenosine transferase [Prevotella bryantii B14] Length = 270 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 15/263 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DLNI K IA++ + I V+E+G G G LTQ L RKV V+E Sbjct: 4 VKPKKNLGQHFLTDLNIAKAIADTVDACPDIPVLEVGPGMGVLTQYL-KTKDRKVRVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + S +I+ +D L++D K F+ P + N PY+I +++ F + Sbjct: 63 DSESVAFLHENFSFMSE--DILGEDFLRMDLNKVFD-GQPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV RI +Q + YG LSVL +F + +VF P Sbjct: 120 DNKELIP---CCTGMIQREVALRIASQPGNKAYGILSVLIQAWYNVEYLFTVDENVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252 PKV S VI + + + C + K++ + F +RRK LR S+K++ E + Sbjct: 177 PKVKSAVIRMTRNDVMDLGCDEKLFKRLVKTVFNQRRKMLRVSIKQMFPGVKASEEFMT- 235 Query: 253 AGIETNLRAENLSIEDFCRITNI 275 G R E LSI+ F +TN+ Sbjct: 236 -GELMTKRPEQLSIQQFIELTNL 257 >gi|255533693|ref|YP_003094065.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366] gi|255346677|gb|ACU06003.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366] Length = 260 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 10/261 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D NI KI + V+E+G G G L+ +LL + +I+ Sbjct: 4 VRAKKHLGQHFLTDKNIAAKIVNGLVHTDKYKQVLEVGPGMGILSDLLLERKDLETYLID 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + + L+ Q +RL I D L ++ F II N PYNI +++LF Sbjct: 64 IDVESYHFLQQKYPQLGSRL--INGDFLALNLSDIF--KDKYAIIGNFPYNISSQILFKI 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + +FQKEV ER +++ + YG LSVL +F + P F P Sbjct: 120 LENRS---SVVEMVGMFQKEVAERCASKEGTKDYGILSVLIQAYYHIEYLFTVKPGTFNP 176 Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + +PC + + + F +RRKTLR +L + ++ + + Sbjct: 177 PPKVNSGVIRLSRNAVETLPCDEKLFWRTVKAGFNQRRKTLRNALSGIIPKDKMDEHPF- 235 Query: 257 TNLRAENLSIEDFCRITNILT 277 + RAE LS+ DF +T+ L Sbjct: 236 FDKRAEQLSVNDFIVLTSHLA 256 >gi|218780962|ref|YP_002432280.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans AK-01] gi|218762346|gb|ACL04812.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans AK-01] Length = 289 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 141/281 (50%), Gaps = 13/281 (4%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 NN++ S K +L+ + + PKK GQNFL D + E + +V+EIG G G LT Sbjct: 7 NNRALSAKALLAAFDLKPKKAKGQNFLADPATARACVERADLSPDDSVLEIGPGLGALTI 66 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRII 122 ++ A++VI +E D +L++ + + I+ D LK D + ++ Sbjct: 67 P-MSRKAKQVIAVEWDTNLAKVLENQIESLGLSNITILNQDILKTDIRGIAERAGGNMVV 125 Query: 123 A-NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 A NLPYNI +++L I ++ L+FQ E+ +RI A+ YGR++VL + Sbjct: 126 AANLPYNISSQVLIRLIQNRD---LFKKAALMFQTELAQRIMAEPGGKDYGRITVLAQYS 182 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 ++ +++ + P F+P P+V S V+ F+ + L + + AF KRRKTL+ +L Sbjct: 183 SRIRVLYSLGPAHFYPKPQVDSQVLEFLFKEPDPSVNEDILFAVVKAAFAKRRKTLKNAL 242 Query: 242 KRL-------GGENLLHQAGIETNLRAENLSIEDFCRITNI 275 + L +AGI+ RAE LS+++F + Sbjct: 243 SNSELPFSGEQAQAALDEAGIDPKRRAETLSVDEFVALAKA 283 >gi|307566374|ref|ZP_07628813.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A] gi|307344951|gb|EFN90349.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A] Length = 267 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 13/265 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I K+IA++ S I ++EIG G G LTQ L+ R++ V+E Sbjct: 4 VKPKKNLGQHFLTDLSIAKRIADTVDSYPNIPILEIGPGMGVLTQYLVE-KHREIKVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L D R II D LK+D + F + N PY+I +++ F + Sbjct: 63 DAESVKYLNDRFPNL--RENIIGKDFLKMDLKNIF-YGKQFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+TA+ + YG LS+L +F + VF P Sbjct: 120 DYKDLIP---CCTGMIQREVAIRMTAKPCNKTYGILSILIQAWYDVEYLFTVDETVFNPP 176 Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQA 253 PKV S VI + + C K++ + F +RRK LR SLK++ + + Sbjct: 177 PKVKSAVIRMTRNKVTSLGCDENLFKRLVKTVFNQRRKMLRVSLKQIIKSYSTSEVFFKQ 236 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 I R E LSI+ F +TN++++ Sbjct: 237 DI-MTKRPEQLSIKQFVELTNMVSE 260 >gi|257894901|ref|ZP_05674554.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408] gi|257831280|gb|EEV57887.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408] Length = 241 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 20/244 (8%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108 +IE+G G G LT+ L A++V+ E D + P+L D + N + I+ D LK D Sbjct: 1 MIEVGPGIGALTEQLAKH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLS 58 Query: 109 --FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 + F+ P++++ANLPY I T ++ +++ +D + L ++ QKEV +RI+A+ Sbjct: 59 TAVRETFHEELPLKVVANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEP 115 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKK 224 + YG LS+ + +A++ F + VF P P V S ++ P ++ + Sbjct: 116 GTKAYGSLSIAVQYYMEASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFR 175 Query: 225 ITQEAFGKRRKTLRQSLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNI 275 +T+ AF +RRKTL +L+ G++ L AGI+ R E LS+++F ++N Sbjct: 176 LTKAAFQQRRKTLWNNLQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNA 235 Query: 276 LTDN 279 +++N Sbjct: 236 MSEN 239 >gi|315187092|gb|EFU20849.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6578] Length = 280 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 139/281 (49%), Gaps = 17/281 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ +++ + + K GQ+FL+ ++L++I + G V EIG G G Sbjct: 1 MGETSYPIRMRELMARHGLRALKRFGQHFLVRDDVLRRIVRALDLHPGEQVWEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT LL G +V+ E D+ F IL++ + P L I++ D + + + P R Sbjct: 61 LTAHLLDEGV-EVVGFEIDRGFVSILREEFGEAP--LTIVEGDV-RDTWRTVYQRRVPHR 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPYN+ T ++ +++ P + Q+EV ER+ A SP YG LSV+ G Sbjct: 117 VVGNLPYNVATSIILDFLEGGLVVPQ----VFMVQREVAERMAASVGSPAYGALSVIVGT 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239 + ++F + P F+P PKV S+V+ P +P+ + S F RRK L+ Sbjct: 173 FYRCELLFHVPPTAFYPRPKVWSSVLRLHPVTSPVSQEDIPSFLSFVWNLFRYRRKMLKN 232 Query: 240 SLKR--LGGE------NLLHQAGIETNLRAENLSIEDFCRI 272 L R LG E +LL + GI+ LRAE L ++ + Sbjct: 233 VLLRSPLGAEGVEEVGSLLERVGIDPTLRAEQLPLDRIHAL 273 >gi|255348718|ref|ZP_05380725.1| dimethyladenosine transferase [Chlamydia trachomatis 70] gi|255503258|ref|ZP_05381648.1| dimethyladenosine transferase [Chlamydia trachomatis 70s] Length = 277 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + L + L KK + QNFL+D NIL+KI ++ G V+EIG G G L+++ Sbjct: 4 SSIEQLTSFLRSVNGRVKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL+ GA VI +EKD F L SQ P +EI + + RI+AN Sbjct: 64 LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACEYPLTSLEDKGWKGKGRIVAN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+I T LL + P W+++T++ Q EV RITA+ YG L+V + Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F +SP+ F+P P V S V+H H +E +T+ AFG+RRK L SLK Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236 Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 L ++ +L Q G R E + +E++ +I ++L D Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276 >gi|195326894|ref|XP_002030159.1| GM25292 [Drosophila sechellia] gi|194119102|gb|EDW41145.1| GM25292 [Drosophila sechellia] Length = 414 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 144/293 (49%), Gaps = 19/293 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ Y++ +K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 101 PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPKDLVLEVGPGPGGITRS 160 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120 +L ++++++EKD +F +LK+ +S + +I DD L+ + E+ + S I Sbjct: 161 ILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIH 220 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP+ I TRLL NW+ + +TL FQ+EV ERI A RLS Sbjct: 221 LIGNLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLS 280 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ M F I F P P+V V+ IP P ++++ + F R+ Sbjct: 281 VMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRHIFSMRQ 340 Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R+ L L +A ++ LR L++E R+ + +++ Sbjct: 341 KYCRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 393 >gi|108758752|ref|YP_630281.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622] gi|118600879|sp|Q1DAP2|RSMA_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|108462632|gb|ABF87817.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622] Length = 283 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 127/277 (45%), Gaps = 17/277 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S + IL + + K GQNFL D + L+ IA++ V+E+G G G+LT+ L Sbjct: 3 SPRDILKRHGLRAKYSWGQNFLGDEDALEAIADALNLRADEPVVELGPGLGHLTRFLAAT 62 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 GAR V +E+D+ +L+ P + ++ +A VDF + + + NLPY+ Sbjct: 63 GAR-VTAVERDRDMVMVLEK--EAIPG-VRVVSGNAATVDFAQVAGAPD-VAVAGNLPYH 117 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + + +LF + QKEV ER+ A+ + YG L+VL G A + Sbjct: 118 LTSPILFRVLEQRAH---VSRAVFTLQKEVVERLAAEPGNRDYGLLTVLLGMHYDAENVL 174 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKR--- 243 + F P PKV S V+ +P ++ + +F RRKTL S+K Sbjct: 175 TLEAWRFHPPPKVDSAVLRLTRRKSPRAPIIDEARFTRVVKASFAHRRKTLINSIKSDPT 234 Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276 LG L AG++ RAE L+ E+F I L Sbjct: 235 LGTTETLIAALEAAGVDPQRRAETLTPEEFAAIERAL 271 >gi|308272694|emb|CBX29298.1| Dimethyladenosine transferase [uncultured Desulfobacterium sp.] Length = 304 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 15/282 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S +T+LS + + PKK GQNFL D + + I S L ++E+G+G G LT L Sbjct: 25 SPRTLLSAWNLSPKKQYGQNFLADPSTAEMIIFRSKILPEDIILEVGSGLGALTIPLAA- 83 Query: 69 GARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLP 126 A +V +EKD +L+ +I S+ + +EI+ ++ LK+D I + NLP Sbjct: 84 AAHQVYAVEKDPNLVQVLQNEILSKSIDNVEILNENILKLDINGLAAKHDRKIIVFGNLP 143 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNI +++L I + L+FQKE+ +RI + S YGR+SV+ + Sbjct: 144 YNISSQILIKLIKERSC---VSRAILMFQKELAQRICGKPGSKDYGRISVMLKYCADTAK 200 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244 + D+ +F+P PK+ S ++ + + + + AFGKRRKTL+ SL Sbjct: 201 IADVKASLFYPKPKIDSEILEIRFKEHQDVVADDETFFFSVIKAAFGKRRKTLKNSLSAS 260 Query: 245 -------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 E+ L+ AGI+ + R+E L+IE+F ++ N + + Sbjct: 261 ELGISAQNAESALNSAGIDPSRRSETLNIEEFVKLGNTVYKS 302 >gi|120602408|ref|YP_966808.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4] gi|166221661|sp|A1VD65|RSMA_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120562637|gb|ABM28381.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4] Length = 266 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 126/262 (48%), Gaps = 8/262 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQNFL D NI +IA VIEIG GPG LT+ + G ++ ++EKD Sbjct: 4 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + +++ DAL +E+ + + P ++I NLPYN+ + L+++ S Sbjct: 64 HHWAREHHLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 122 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + + QKEVGERI A S YG LSV TK F + PHVF P P Sbjct: 123 RA---PGLVRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 179 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ F P P + L + + F +RRK L+ L+ G LL + GI Sbjct: 180 KVDSAVLAFTPRTDRPDAVQSKRLAHVLRLCFQQRRKQLQGILRPHVGGDASALLAELGI 239 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + R E LS E F + + Sbjct: 240 DPAARPETLSPERFIALGEAVA 261 >gi|157828876|ref|YP_001495118.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|166221698|sp|A8GT85|RSMA_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157801357|gb|ABV76610.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 301 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +++ P + GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 63 KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121 Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 I + II+NLPY+IGT L+ W+ S+TL+ QK Sbjct: 122 EAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP NP+ Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPLS 238 Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273 L +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRIA 298 Query: 274 NIL 276 IL Sbjct: 299 EIL 301 >gi|126311223|ref|XP_001381331.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 344 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 137/299 (45%), Gaps = 23/299 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ + + +K + QNFLLDL + KI +G L V E+G GPG T+ + Sbjct: 14 PLPTVGEIIKLFGLRAQKQLSQNFLLDLRLTDKIVRKTGDLKNAHVYEVGPGPGAFTRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L ++V+EKD +F P L+ +S P +L I+ D L E+ F + Sbjct: 74 LNAQVADLLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERMFPEHLKRRWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+TA + Sbjct: 134 PNVYIIGNLPFSVSTPLIIKWLENISKRDGPFVYGRTQMTLTFQKEVAERLTAGTGNKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + K F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSIMAQYLCKVDNSFIIPGRAFVPKPEVDVGVVHFTPLVQPQINQPFKLVEKVVQSTF 253 Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRK + L E +L A ++ LR LSI F + ++ D Sbjct: 254 QFRRKYCHHGIGILFPQAERSKNTEKMLMLADVDPTLRPSQLSILHFKNLCDVYRKMCD 312 >gi|55980052|ref|YP_143349.1| dimethyladenosine transferase [Thermus thermophilus HB8] gi|62900482|sp|Q5SM60|RSMA_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226192685|pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 gi|226192686|pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P43212 gi|226192687|pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P43212 gi|226192688|pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P43212 gi|226192689|pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|226192690|pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|226192691|pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|226192692|pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With 5'-Methylthioadenosine In Space Group P212121 gi|55771465|dbj|BAD69906.1| dimethyladenosine transferase [Thermus thermophilus HB8] Length = 271 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 142/282 (50%), Gaps = 19/282 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ S++ +L + + K GQNFL+ L++I E++ G V E+G G G Sbjct: 1 MSKLASPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GA +V IEKD + P+L++ S P + ++ DAL +E+ S Sbjct: 60 LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYPWEEVPQGS---L 113 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY+I T L+ + + L L QKEV ER+TA+ +P YG L++ Sbjct: 114 LVANLPYHIATPLVTRLLKTGR----FARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 A +FD+ P FFP PKV S+++ P L ++ + AFGKRRKTL + Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGA---LDDPGLFRLVEAAFGKRRKTLLNA 226 Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L G E L G+ +RAE L +E F R+ L Sbjct: 227 LAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 >gi|238062573|ref|ZP_04607282.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149] gi|237884384|gb|EEP73212.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149] Length = 291 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 15/277 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I ++G +E+G G G+L + L Sbjct: 9 PAEIRDLAARLGVNPTKKLGQNFVHDPNTVRRIVAAAGLAADDVALEVGPGLGSL-TLAL 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +E D L +++H RL + + DAL++D + +P ++ Sbjct: 68 LPAAAHTHAVEIDPTLAAALPQTAARHAGPYAGRLTVHRADALRIDPAELA-APAPTALV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + ++A P ++ QKEV +R+ A S YG SV W Sbjct: 127 ANLPYNVAVPVVLHLLAA---LPSLRHGLVMVQKEVADRLVAGPGSKVYGIPSVKLAWHA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR--- 238 + + P+VF+P P V S ++ F P P E + + AF +RRKTLR Sbjct: 184 HSRAAGRVPPNVFWPVPNVDSGLVAFTRREPPRPEVPRERVFAVVDAAFAQRRKTLRAAL 243 Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 + L AG++ R E+L++E F I Sbjct: 244 AGWAGGADRAAAALTAAGVDPGARGESLTVEQFAAIA 280 >gi|332653433|ref|ZP_08419178.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16] gi|332518579|gb|EGJ48182.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16] Length = 289 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 154/293 (52%), Gaps = 21/293 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N + +K +LS + K MGQNFL++ + + IA++SG+ G+ V+E+G G G Sbjct: 1 MDLCN-INDIKALLSRHGFRFSKSMGQNFLIEDWVPRDIADASGAAPGVGVVEVGPGIGP 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116 LT+ L +L A KV+ IE D+ PIL + S +PN EI D LK D + Sbjct: 60 LTREL-SLRADKVVSIELDRSLLPILAETLSDYPNA-EIFPGDVLKTDLPALVSEKLAGL 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 SPI ANLPYNI T + I A + S+T++ Q+EV RI A + YG SV Sbjct: 118 SPIAC-ANLPYNITTPAITALIEAGCFG----SITVMIQREVARRICAAPGTGDYGAFSV 172 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRK 235 + TK ++FD+ P F P+PKVTS+V+ +P P + ++ + AF +RRK Sbjct: 173 YCQYHTKPEILFDVPPSCFIPAPKVTSSVLRMVPQTPPAEVDDPKHFFQVVRAAFAQRRK 232 Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 TL SL G N + Q G+ N+R E LSI DF ++ L + Sbjct: 233 TLLNSLSSALGGTYQKEAIANAIAQCGLAENIRGERLSISDFAALSKALRRQE 285 >gi|295105199|emb|CBL02743.1| dimethyladenosine transferase [Faecalibacterium prausnitzii SL3/3] Length = 283 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 16/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ + Y K GQNF+++ I KI ++SG VIEIG G G Sbjct: 1 MPELTDLSVIRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LT+ L A KV+ IE D++ P+L + + N +++ D LKVD + Sbjct: 61 LTKELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + ++ + ESLT++ QKE +R+ A + +S Sbjct: 119 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAVPGTRASSAISCA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + + +MF +P F+P+PKVTS V+ P + + + AFG+RRK Sbjct: 176 VNYYATSKLMFTAAPGSFYPAPKVTSAVVRMDIRPTPAVQVEDEAGYFALVRAAFGQRRK 235 Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 T +L + + AG + +R E L++EDF +I L Sbjct: 236 TAANAIAGGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 282 >gi|218458347|ref|ZP_03498438.1| dimethyladenosine transferase [Rhizobium etli Kim 5] Length = 202 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 108/203 (53%), Positives = 144/203 (70%), Gaps = 1/203 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KVI IE+D + P L +I+ +P RLE+I+ DALK DFE P++ Sbjct: 61 LTRAILALGAKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPEG-PVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL VL+GW Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLSGW 179 Query: 181 RTKATMMFDISPHVFFPSPKVTS 203 RT+A M FD+ P P PKVTS Sbjct: 180 RTEARMAFDVPPRALTPPPKVTS 202 >gi|217967874|ref|YP_002353380.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724] gi|217336973|gb|ACK42766.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724] Length = 279 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 147/279 (52%), Gaps = 13/279 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +KS + IL I KK +GQNFL+D NILKKI ++ ++E+G G G Sbjct: 1 MDLTSKSKLI-EILRRNNIFLKKSLGQNFLIDKNILKKIIDALEISKEDNILEVGCGVGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L A+KVI +E D++F IL+++ + N +EI+ +D LK+D + N+ P + Sbjct: 60 LTLELAK-KAKKVIGVEIDKRFKSILEELLKDY-NNVEILFEDVLKLDLSRIINL--PYK 115 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPY I L + P+ + ++ QKE+ ER+T+ S Y LS+L Sbjct: 116 LVGNLPYYISGSFLGEYFQK---GPYAHLMVIMLQKEMAERLTSSPGSKKYSPLSILLHI 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ 239 ++ +SP FFP+P+V S V+ + E K+ +E+F +RRK L Sbjct: 173 TYSYEIISKVSPSCFFPAPEVESVVLKLKFNPKLDKIYNKEFFFKLIKESFNQRRKFLLN 232 Query: 240 SLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITN 274 +L+R + + + I+ +RAE LS E + ++N Sbjct: 233 NLERAFPSIDWKYVFTELNIDGKIRAEELSPEGYITLSN 271 >gi|323344894|ref|ZP_08085118.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269] gi|323094164|gb|EFZ36741.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269] Length = 269 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 13/265 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK +GQ+FL DL+I K+IA++ + I ++EIG G G LTQ L+T R+V +E Sbjct: 4 VRPKKNLGQHFLTDLSIAKRIADTVDTCPDIPILEIGPGMGVLTQFLVTKN-REVRAVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + Q ++ II +D L++D F + N PY+I +++ F + Sbjct: 63 DRESVAFLHENYPQLRDK--IIGEDFLRMDLSTIFG-GHTFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P T + Q+EV +RI A + G LS+L +F + +VF P Sbjct: 120 EYRQFIP---CCTGMIQREVAQRIAASPGNKLNGILSILIQAWYNVEYLFTVDENVFDPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253 PKV S VI + + C K++ + F +RRK LR SL+++ + + Sbjct: 177 PKVKSAVIRMTRNNVTDLGCDEVLFKRLVKAVFNQRRKMLRVSLRQIFNQTKPSAVFYAQ 236 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 + R E L + F +TNI+ + Sbjct: 237 DV-MTKRPEQLGVAQFVALTNIVAE 260 >gi|313115046|ref|ZP_07800536.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622608|gb|EFQ06073.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii KLE1255] Length = 287 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 16/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ + Y K GQNF+++ + KI ++SG VIEIG G G Sbjct: 4 MPELTDLSVIRALCEKYDFALSKGFGQNFIINPGLPPKIVDASGVDKRYGVIEIGPGIGV 63 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LT+ L A KV+ IE D++ P+L + + N +++ D LKVD + Sbjct: 64 LTRELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM 121 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + ++ + ESLT++ QKE +R+ A + +S Sbjct: 122 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAAPGTRASSAISCA 178 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + + MMF +P F+P+PKVTS V+ P E + + AFG+RRK Sbjct: 179 VSYYATSKMMFTAAPGSFYPAPKVTSAVVRMEIRPQPAVQVEDEEGYFALVRAAFGQRRK 238 Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 T ++ + + AG + +R E L++EDF +I L Sbjct: 239 TAANAIASGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQQALA 286 >gi|194869297|ref|XP_001972426.1| GG15524 [Drosophila erecta] gi|190654209|gb|EDV51452.1| GG15524 [Drosophila erecta] Length = 502 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 144/293 (49%), Gaps = 19/293 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ Y++ +K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 189 PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDSRDLVLEVGPGPGGITRS 248 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120 +L ++++++EKD +F +LK+ +S + +I DD L+ + E+ + S I Sbjct: 249 ILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIH 308 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP+ I TRLL NW+ + +TL FQ+EV ERI A RLS Sbjct: 309 LIGNLPFAISTRLLINWLEDLAGRRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLS 368 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ M F I F P P+V V+ IP P ++++ + F R+ Sbjct: 369 VMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPLVERVVRHIFSMRQ 428 Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R+ L L +A ++ +R L++E R+ + +++ Sbjct: 429 KYCRRGFGTLLPPEDREEVAQKLFQRAEVQDTMRPFELTVEQCLRLAEVYSEH 481 >gi|313680695|ref|YP_004058434.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977] gi|313153410|gb|ADR37261.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977] Length = 273 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 18/281 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K +++ +L Y + + +GQNFL+D +L I ++ G V E+G G G Sbjct: 1 MPSLTKPSTVRALLERYGLAADRRLGQNFLVDAGLLDVIVRTADVRPGQEVWEVGPGLGT 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L GAR V IEKD + P+L++ + P +E+ DAL D+ + + Sbjct: 61 LTRALALAGAR-VHAIEKDTRLEPVLRETLAGLP--VELSFADALDCDWSE---VPPGSL 114 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++NLPYN+ T LL + + L +L Q+EV ER+ A +P YG LS+ Sbjct: 115 FVSNLPYNVATPLLSELLRQGRFG----RLVVLLQREVAERLAAAPGTPAYGLLSLRAAH 170 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + + D P F+P PKVTST++ P L ++ + AF RRKTLR++ Sbjct: 171 HARVRKVRDFPPEAFYPRPKVTSTLVELEHTGAP---DDPELFRLIEAAFAARRKTLRKN 227 Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L++ G L +AG+E +RAE L IEDF ++ L Sbjct: 228 LEQAGWPRDRVLAALAEAGLEPMVRAERLGIEDFRKLHAAL 268 >gi|257458323|ref|ZP_05623471.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580] gi|257444258|gb|EEV19353.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580] Length = 289 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N +L +L + +K GQNFL++ I +++ + G G +V E+G G G++T + Sbjct: 9 NAPSALAAVLDEHGFGMQKKFGQNFLINAYIRQELVSALGLSAGNSVWEVGPGLGSMTSL 68 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL GA V V E D+ F +L H + +I+ D LK ++ + P N Sbjct: 69 LLETGAD-VTVFEIDRGFVQLLTSYFGPHQS-FHLIEGDVLKTWKAEY-DRQVPDAFFGN 125 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI +L+ I + F+ + + QKEVG R+TA S Y SVL W Sbjct: 126 LPYNIAAKLIAATIETEC---FFNRMVITVQKEVGLRMTAAPGSADYSSFSVLCQWAYDV 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 T + DI+P F+P P V S + FI +P P L + + FG RRKT++ +L Sbjct: 183 TPIRDIAPAAFWPKPNVESRALRFIKKRSPQPVRDARLFLTLVRGLFGARRKTVKNNLST 242 Query: 244 L---------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L E LL +A I+ RAE+L++ DF R+++I+ Sbjct: 243 LLAARGKKTPSAEALLKEASIDPVDRAESLTVYDFIRLSDIVA 285 >gi|83816376|ref|YP_446299.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855] gi|119365670|sp|Q2S0I2|RSMA_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83757770|gb|ABC45883.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855] Length = 296 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 11/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ +GQNFL D N+ +KI + + V+E+GAG G LT+ L R + +E Sbjct: 34 FRPKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEI 92 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137 D++ +L++ + + + D + D+ + P+R+I+N PY + + +LF Sbjct: 93 DERAVEVLRERVPEAD----VRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFAL 148 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + L QKEV ERI A+ ++ YG LSVL + T+ F + P VF P Sbjct: 149 LGQRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSP 205 Query: 198 SPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P VTS V+ P P + ++ + AF +RRK LR SL E + Sbjct: 206 QPDVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPND 265 Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281 RAE L+ ++F + L + D Sbjct: 266 WGRKRAEALTPDEFATLARHLDAHAD 291 >gi|34581355|ref|ZP_00142835.1| dimethyladenosine transferase [Rickettsia sibirica 246] gi|28262740|gb|EAA26244.1| dimethyladenosine transferase [Rickettsia sibirica 246] Length = 301 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 63 KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121 Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 +I + II+NLPY+IGT L+ W+ S+TL+ QK Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PI 215 EV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP N P Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSPS 238 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273 + +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRIA 298 Query: 274 NIL 276 IL Sbjct: 299 EIL 301 >gi|320095741|ref|ZP_08027390.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977327|gb|EFW09021.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 301 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 17/281 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ I I P K +GQNF+ D +++I ++G +G VIE+G G G+LT LL Sbjct: 2 EVRAISGALGIRPTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLEA 61 Query: 69 GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF--NISSPIRII 122 GAR V +E D L + +RL ++ DA + + P +++ Sbjct: 62 GAR-VRAVEIDPVLAAALPETVRARMGGAADRLHVVTADATAITGPADLGPDWPPPAKLV 120 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P + ++ Q EV +R+ A S YG SV W Sbjct: 121 ANLPYNVAVPVLLAMLDS---FPTLTDVLVMVQAEVADRLAAGPGSRTYGVPSVKAAWYG 177 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQS 240 +AT I VF+P P V S ++ + + T AFG+RRKTLR + Sbjct: 178 RATRAGTIGRSVFWPVPGVDSALVRLRRSAEARGDDALRRATFEATDAAFGQRRKTLRAA 237 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK G E LL +AGI+ R E L+I++F R+ L Sbjct: 238 LKDWAGGAAASEALLAEAGIDPARRGETLTIDEFTRLGAAL 278 >gi|238797489|ref|ZP_04640987.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969] gi|238718630|gb|EEQ10448.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969] Length = 232 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G LT+ + R + VIE D+ L Q ++L I Q DA+KV+F Sbjct: 1 MVEIGPGLGALTEPVAARMDR-MTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFA 58 Query: 111 KFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + + P+R+ NLPYNI T L+F+ S + + QKEV R+ A NS Sbjct: 59 ELAELAGQPLRVFGNLPYNISTPLMFHLFSYTNA---IRDMHFMLQKEVVNRLVAGPNSK 115 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQ 227 YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + L +IT Sbjct: 116 AYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITT 175 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +AF +RRKT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 176 QAFNQRRKTVRNSLGDLFTAEQLIELGIDPILRAENISVAQYCKLANWLS 225 >gi|326383797|ref|ZP_08205482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Gordonia neofelifaecis NRRL B-59395] gi|326197561|gb|EGD54750.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Gordonia neofelifaecis NRRL B-59395] Length = 311 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 17/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K +GQNF+ D N +++I +SG V+E+G G G+LT LL Sbjct: 26 PAEIRALAAELDVRPTKTLGQNFVHDANTVRRIVTASGIGADDVVLEVGPGLGSLTLALL 85 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 A +V+ +E D++ L ++ +++ DAL V +P ++ Sbjct: 86 AE-AGRVVAVEIDRKLAARLPRTIAEFAPGQAANFDVVTADALGVLPGDL--PQTPTALV 142 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + ++ P + ++ Q EV +R+ A YG SV + Sbjct: 143 ANLPYNVAVPVLLHLMAQ---FPTIRTALVMVQAEVADRLAATPGGRIYGVPSVKARFFG 199 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQS 240 I HVF+P PK+ S ++ P + AF +RRKTLR + Sbjct: 200 DVARAGSIGKHVFWPEPKIESGLVRIDRRDAFGTDPALRSETFAVIDAAFAQRRKTLRSA 259 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 L G E LL A I+ LR E +++DF R+ Sbjct: 260 LSSWAGSAPHAEELLRAAEIDPGLRGERCTVDDFVRLARA 299 >gi|332877785|ref|ZP_08445524.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684250|gb|EGJ57108.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 277 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 89/275 (32%), Positives = 130/275 (47%), Gaps = 24/275 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL I + IA++ + GI V+E+G G G +TQ L+ R + V+E Sbjct: 4 VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLV-RKDRPLKVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L+ Q II+DD LK+ E+ F P + N PYNI +++ F + Sbjct: 63 DFESVAYLRTHYPQLEEN--IIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + QKEV ERI A S YG LSVL +F + HVF P Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLLQAWYSVEYLFTVHEHVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--------- 248 PKV S VI + + C K++ + F +RRK LR S++ + + Sbjct: 177 PKVKSAVIRMTRNATTDLGCDERLFKQVVKTTFNQRRKVLRNSIRPVLADADHKVQQEGR 236 Query: 249 ------LLHQAGIETNLRAENLSIEDFCRITNILT 277 A I R E LS+ +F +TN + Sbjct: 237 LPKDHTEFLSAEI-FGRRPEQLSVAEFVNLTNAVA 270 >gi|223938516|ref|ZP_03630408.1| dimethyladenosine transferase [bacterium Ellin514] gi|223892778|gb|EEF59247.1| dimethyladenosine transferase [bacterium Ellin514] Length = 278 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 12/277 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K +K IL+ +I K +GQNFL D N L++IA+ + V+EIG G G LT++L Sbjct: 2 KLTEMKQILASGQIQLTKSLGQNFLHDQNQLRRIADGAELSKSDKVLEIGPGLGPLTELL 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + A +V+ IEKD++ L+ + ++ DAL+ + + SS +++ANL Sbjct: 62 IER-AGEVLAIEKDRRLVDFLEKRYANTAG-FTLLHQDALEYIRREPQDWSS-WKLVANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY++ + +L + + P + + Q EV R+ AQ + YG LS+L + Sbjct: 119 PYSVASPILVDLAQSKGCP---RMMVVTLQLEVARRLVAQTDDDDYGVLSLLIQLYYEPQ 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243 F I FFP+P V S + P+ ++ ++ + A +RRK + + LK+ Sbjct: 176 GHFKIPSDCFFPAPDVDSACVVLKRREQPLLTSELNDAFARLVKLALSQRRKMMLKLLKQ 235 Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276 + + +RAE +S+E F R+T IL Sbjct: 236 NWPVEKLTAAFEELQLSPQIRAEKVSLEQFVRLTQIL 272 >gi|228995432|ref|ZP_04155102.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17] gi|229003046|ref|ZP_04160903.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4] gi|228758204|gb|EEM07392.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4] gi|228764293|gb|EEM13170.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17] Length = 258 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 20/259 (7%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 +I + + IEIG G G LT+ L A+KV+ E DQ+ PIL + + + N Sbjct: 2 NRIVDYAEIGPESGAIEIGPGIGALTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN- 59 Query: 97 LEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 + +I D LK D + F + ++ANLPY + T +LF + + Sbjct: 60 VTVINKDILKADVHEVFGEQFEKGQDVMVVANLPYYVTTPILFKLLEEQLP---VRGFVV 116 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEVG+R+ A+ + YG LS+ + T+ + + VF P P V S VI + Sbjct: 117 MMQKEVGDRLAAKPGTKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRP 176 Query: 213 NPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRA 261 PI + ++ + +F +RRKTL +L + +L + GI+ R Sbjct: 177 KPIVEVKDEKFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRG 236 Query: 262 ENLSIEDFCRITNILTDNQ 280 E LSIE+F ++N L ++ Sbjct: 237 ETLSIEEFAALSNALVSHK 255 >gi|209526260|ref|ZP_03274790.1| dimethyladenosine transferase [Arthrospira maxima CS-328] gi|209493357|gb|EDZ93682.1| dimethyladenosine transferase [Arthrospira maxima CS-328] Length = 274 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 128/268 (47%), Gaps = 13/268 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L I E++ G ++EIG G G LT+ LL V+ +E D Sbjct: 5 QPRKRFAQHWLRSPATLNHILEAADLSLGDRILEIGPGTGILTERLLP-KVSSVVAVEID 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135 + L + N L ++Q D L D F +P +++AN+PYNI ++ Sbjct: 64 RDLCVQLAKKFGKIDNFL-LLQGDILNFDLNGYLSGFPKFQNPNKVVANIPYNITGPIIE 122 Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + P ++++ LL QKEVG R+ A+ +S +G LSV + + + + Sbjct: 123 GLLGTIAKPAVKPFDAIVLLVQKEVGARLCAKPSSKAFGALSVRVQYLAECDWICHVPAT 182 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE----N 248 F+P PKV S V+ P P + L+ + + F RRK LR +LK Sbjct: 183 AFYPPPKVDSAVVRLRPRPIASPAQNPQLLETLVKLGFSTRRKMLRNNLKSQVEPQTLNQ 242 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL I +RAE+LS++ + +++N+L Sbjct: 243 LLETLDINPQVRAEDLSLQQWVQLSNLL 270 >gi|71891913|ref|YP_277643.1| dimethyladenosine transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|122064283|sp|Q493R7|RSMA_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71796019|gb|AAZ40770.1| dimethyladenosine transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 267 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 130/262 (49%), Gaps = 10/262 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQ 80 KK Q FL D N++ I ++ ++EIG G G LT+ +L + +I+IE+D Sbjct: 12 KKKWSQVFLKDQNVIDTIVKTINPKKHQKILEIGPGLGALTKQILNIADLDSLILIERDS 71 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139 L ++ I+ D + +F + +R+I NLPYNI T L+ Sbjct: 72 NLVNRL---VQMFNKKINILHQDIMTTNFFDLSHKVGQKLRLIGNLPYNIATELIVYLF- 127 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + +FQKEV R+ A N YGRLS++T + K + I FFP P Sbjct: 128 --QYTNVIYDMHFMFQKEVATRLYANPNKKEYGRLSIITQYHCKVVPLLTIPATSFFPIP 185 Query: 200 KVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV S V+ +PH N P P + L +T+ AF +RRKTLR SL E + Q GI Sbjct: 186 KVESMVMRLLPHTNTPYPIVNIGKLSSLTKLAFRQRRKTLRNSLSTFFNETEITQKGINP 245 Query: 258 NLRAENLSIEDFCRITNILTDN 279 LRAEN++I +C + N+L + Sbjct: 246 ALRAENITINQYCTLANMLNNK 267 >gi|57234784|ref|YP_181149.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195] gi|119365020|sp|Q3Z9F0|RSMA_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|57225232|gb|AAW40289.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195] Length = 291 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 15/277 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ L+ A Sbjct: 20 KEMMEGYTLRARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKR-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN II D LK + + P +++ANLPY I Sbjct: 79 GQVIAVELDDKLVTALTEKFKAYPN-FRIIHSDILKTSPAEILGQNIPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A+ P E + ++ QKEV + + AQ G L++ + +++ + Sbjct: 138 SAVLRQFLEAEAKP---ELMVVMVQKEVAKNMVAQTGDM--GLLTLSVRFYGNPSLVSVV 192 Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL------K 242 F+P P+V S ++ IP + K+ + FG RRKTL +L Sbjct: 193 PGGAFYPPPEVDSAIVKVAIPQAAIMQGVSEADFFKLARAGFGTRRKTLLNALAQGLGVS 252 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + LL++AGIE RAE LS+E++ + + T+N Sbjct: 253 KQSVLALLNRAGIEPARRAETLSMEEWKMLCLVYTEN 289 >gi|27151572|sp|Q8PU18|RSMA_METMA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase Length = 271 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 27/280 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +++IL Y I Q+FL+D L +I ++ TV+EIGAG GNLT+ L Sbjct: 2 VRSILKKYNIKG-GTFDQHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERLARR- 59 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E D +L D N +EII DALKVDF +F ++++NLPY+I Sbjct: 60 AKKVIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSI 112 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + ++ L++Q E R+ + Y RL++ T + A+++ Sbjct: 113 SSEITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMK 167 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGEN 248 + F P+P+V S VI IP P E+ + F +RRK LR ++ L + Sbjct: 168 VPKGAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSS 225 Query: 249 LLHQAGIET----------NLRAENLSIEDFCRITNILTD 278 LL I+ N RAE+L+ E+ + N++ D Sbjct: 226 LLKIPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 265 >gi|327403715|ref|YP_004344553.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823] gi|327319223|gb|AEA43715.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823] Length = 262 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 10/267 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + KK++GQ+FL D + K+IAE G T IE+G G G LT+ L+ + V+ Sbjct: 3 NVRAKKHLGQHFLKDKGVCKRIAEQFKHHQGVKTAIEVGPGMGALTEFLIQDPETNLYVM 62 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + DQ+ LK SQ R I+ D LK+D P ++ N PYNI +++LF Sbjct: 63 DVDQESIDYLKINYSQLGER--IVFADFLKIDPTTIVGQ-EPFAVLGNFPYNISSQILFK 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I P + FQKEV R+ + + YG LSVL F + HVF Sbjct: 120 CIDLKDHVPEIMGM---FQKEVALRVAEKPGTKVYGILSVLLQAYYDIEYCFTVDEHVFD 176 Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + +PC + K++ + +F +RRKT+R S+K L E + Sbjct: 177 PPPKVKSGVIRCTRNNREKLPCDEKLFKQVVKMSFNQRRKTIRNSIKALLPETYEENPML 236 Query: 256 ETNLRAENLSIEDFCRITNILTDNQDI 282 LR E L +E+F +TN + ++ + Sbjct: 237 --QLRPERLGVEEFIELTNWVEKHRKV 261 >gi|254416619|ref|ZP_05030370.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420] gi|196176585|gb|EDX71598.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420] Length = 283 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 13/270 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K Q++L L +I ++ ++EIG G G LT+ LL ++ +E D Sbjct: 4 KAHKQFAQHWLRSEKALNQIITAAKLQPRDRLLEIGPGTGVLTRRLLGE-VESLVAVEID 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLF 135 + L Q+ N L ++Q D L ++ + F + SP +++AN+PYNI +L Sbjct: 63 RDLCQRLVKSLGQNENFL-LLQGDILSLNLAEHLAAFPHFQSPNKVVANIPYNITGPILQ 121 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + P P +E + LL QKEV +R+ A+ S +G LSV + + D+ Sbjct: 122 TLLGTIAQPITPAFELIVLLVQKEVAQRLCAKPGSKAFGALSVRVQYLADCDWICDVPAI 181 Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P PKV S V+ P ++P + L+ + + F +RK LR +LK L + Sbjct: 182 AFSPPPKVDSAVVRLRPRIVDPSADNPQQLETLVKLGFASKRKMLRNNLKSLCDRDKINQ 241 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278 LL Q RAE+LS+ + + N L + Sbjct: 242 LLEQVDSHPQARAEDLSVSQWVALANRLNE 271 >gi|170077519|ref|YP_001734157.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase [Synechococcus sp. PCC 7002] gi|226732632|sp|B1XIV9|RSMA_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|169885188|gb|ACA98901.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase [Synechococcus sp. PCC 7002] Length = 273 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 13/271 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P+K GQ++L D IL +I ++ V+EIG G G LT LL ++ +E Sbjct: 1 MRPRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQ-VEALLSVEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPYNIGTRLL 134 D+ + PN L +++ D L+ D +F P +++AN+PYNI +L Sbjct: 60 DRDLCKYMVKNYGDRPNFL-LLEADYLQTDINEFLGDFPQFQNPRKVVANIPYNITGPIL 118 Query: 135 FNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + P +ES+ LL QKEVG+R+ A + +G L++ + + + P Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLVAHPCTKAFGALTLRVQYLADCETVCVVPP 178 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F+P PKV S V+ P P + L + + F +RK LR +LK L +L Sbjct: 179 KAFYPKPKVESVVVRLRPRPLAQPAQNPKLLATLIKVGFASKRKMLRNNLKSLYNPEILD 238 Query: 252 ----QAGIETNLRAENLSIEDFCRITNILTD 278 I R E + + + +++ L D Sbjct: 239 PIFADLDISPQARGEEVDLLQWIALSDRLND 269 >gi|260910119|ref|ZP_05916796.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str. F0295] gi|260635623|gb|EEX53636.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str. F0295] Length = 267 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 15/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL I ++IA++ + + ++E+G G G LTQ L T R + V+E Sbjct: 4 VRPKKHLGQHFLTDLGIARRIADTVDACPELPILEVGPGMGVLTQYLAT-KERPLRVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L ++ +D L++D + F+ P + N PY+I +++ F + Sbjct: 63 DTESVEYLHKNFPLLAEN--VLGEDFLRMDLDGVFS-GQPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV RI +Q + YG LSVL +F + VF P Sbjct: 120 DNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDETVFNPP 176 Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252 PKV S VI + + C K++ + F +RRK LR SL++L Q Sbjct: 177 PKVKSAVIRMTRNAVENLGCNEALFKRVVKTVFNQRRKMLRVSLRQLFAGMPASPEFYAQ 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDI 282 R E LS+ +F ++TN++ + Sbjct: 237 EMF--TRRPEQLSVAEFVQLTNMVEQEMNA 264 >gi|241765842|ref|ZP_04763779.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN] gi|241364241|gb|EER59413.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN] Length = 256 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 129/262 (49%), Gaps = 20/262 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ R + VIE Sbjct: 2 KHIPRKRFGQHFLSDGGIIDAIVSAIAPQPGQPMVEIGPGLAALTQPLVERLGR-LTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLF 135 D+ L+ +LE+I+ D LKVDF + + +R++ NLPYNI T +LF Sbjct: 61 LDRDLALRLR-----LHGQLEVIESDVLKVDFTQLARDMHVARLRVVGNLPYNISTPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLLDHVQ---VIEDQHFMLQKEVIDRMVAAPATADYGRLSVMLQWRYAMENVLFVPPESF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG- 254 P P+V S V+ +P P+ L ++ Q AF +RRK LR +L R L G Sbjct: 173 DPPPRVDSAVVRMVPWAEPVAVPPALLSELVQVAFSQRRKLLRHTLGRW-----LEGRGF 227 Query: 255 ---IETNLRAENLSIEDFCRIT 273 +T RAE + ++++ + Sbjct: 228 GGTFDTQRRAEEVPVQEYVALA 249 >gi|254447589|ref|ZP_05061055.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015] gi|198262932|gb|EDY87211.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015] Length = 226 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 9/231 (3%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG G G LT L + +E D+ P L+ + H RL I + DALK DF Sbjct: 2 EIGPGLGALTAPALER-VEHMDAVELDRDLIPKLQTL--DHAERLTIHECDALKFDFAAL 58 Query: 113 FNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + P+R+I NLPYNI + L+F+ + + + + QKEV ER+ A + Y Sbjct: 59 GKLRDKPLRVIGNLPYNISSPLIFHLLHNAEC---IQDMHFMLQKEVVERLAASPGTGDY 115 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLES-LKKITQEA 229 GRLSV + + +F + P F P+PKV S ++ P P+ P L+ L+ + + A Sbjct: 116 GRLSVAVQAQCRVRYLFTVPPGCFTPAPKVDSAIVRLEPLDEPLCPKALQGPLEDLLRTA 175 Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 F +RRKTLR +LK L + GI+ +LR E L +EDF R+ LT + Sbjct: 176 FHQRRKTLRNNLKGLLSSEAIEACGIDPSLRPERLCVEDFVRLVKALTRHH 226 >gi|284053579|ref|ZP_06383789.1| dimethyladenosine transferase [Arthrospira platensis str. Paraca] Length = 276 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 13/268 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L I E++ ++EIG G G LT+ LL A V+ IE D Sbjct: 5 QPRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEID 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135 + L + N L ++Q D L D F P +++AN+PYNI ++ Sbjct: 64 RDLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIE 122 Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + P ++++ LL QKEVG+R+ A+ +S +G LSV + + + + Sbjct: 123 GLLGTIAKPALKPFDAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S V+ P P + L+ + + F RRK LR +LK +L+Q Sbjct: 183 AFYPPPKVDSAVVRLRPRPIASPAQNPQLLETLVKLGFSTRRKMLRNNLKSQVEPQILNQ 242 Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276 I +RAE+LS++ + +++N+L Sbjct: 243 LLETLDINPQVRAEDLSLQQWVQLSNLL 270 >gi|206891185|ref|YP_002249355.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743123|gb|ACI22180.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 263 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 95/263 (36%), Positives = 138/263 (52%), Gaps = 15/263 (5%) Query: 19 IIPKK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I KK +GQ+FL + IL+KI + S V+EIGAG G+LT++LL A++VI IE Sbjct: 5 ISKKKPKLGQHFLRNAEILEKIVKVSEINSNDKVVEIGAGMGDLTEILLK-NAKEVIAIE 63 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + ILK+ N L +I ++ALK +E+ +++AN+PY I ++F Sbjct: 64 IDPVLYKILKERFYGKEN-LVLINENALKFPYEEI----GQFKVVANIPYYITKPIIFKL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + S+TL QKEV ER+ A+ ++ Y LS++ + T+A + F I F P Sbjct: 119 LKLKNLI----SMTLTIQKEVAERLAAKPSTKAYSALSIIAQYYTQAEIKFYIPASFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P+V S VI + KI + AFG+RRK + SLK + E L + Sbjct: 175 PPEVESAVIKMDRRDKSPVEVIDEKLFFKIIKSAFGQRRKMISNSLKSIIDEPKEFLIKI 234 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 GI R E LSIEDF I+N L Sbjct: 235 GINPIKRPEELSIEDFAFISNEL 257 >gi|320527164|ref|ZP_08028351.1| dimethyladenosine transferase [Solobacterium moorei F0204] gi|320132492|gb|EFW25035.1| dimethyladenosine transferase [Solobacterium moorei F0204] Length = 280 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 18/285 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + + K IL + + KK GQNFL+D I+++ AE S VIEIG G G+LT Sbjct: 4 LISTPSRTKEILDQFGLRAKKGFGQNFLVDPIIVERCAEMSHC--EGAVIEIGPGIGSLT 61 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSP 118 + L A+ V+ E D+ P+L+ + N +EII D L D ++ Sbjct: 62 EQLAMH-AQHVLAFEIDEGLIPVLQHTLEGYSN-VEIILQDFLMCDLDEVVHALKEKYGT 119 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 + + ANLPY I T +LF P +T++ QKEVG+R A+ P Y LSV Sbjct: 120 VSVCANLPYYITTPVLFKIFEN----PDISYITVMVQKEVGDRFVAKPKDPEYNALSVEG 175 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237 + +F + F PSP V S +I F N + ++ + F +RRKT+ Sbjct: 176 QYLFDIKRLFTVPGRSFNPSPAVDSVIIQFARKDNDASNEEIRDFFELVRACFKQRRKTI 235 Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277 +LK + +L +A I N RA+ L+I++ +I ++ Sbjct: 236 YNNLKEYVDDGVKATEILEKANIPVNKRAQELTIDELKQIHEVMK 280 >gi|270307774|ref|YP_003329832.1| dimethyladenosine transferase [Dehalococcoides sp. VS] gi|270153666|gb|ACZ61504.1| dimethyladenosine transferase [Dehalococcoides sp. VS] Length = 291 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 81/271 (29%), Positives = 139/271 (51%), Gaps = 15/271 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K ++ Y + +K +GQ+FL+ +L KI ++ TVIE+G G G LT+ LL A Sbjct: 20 KEMMEGYTLKARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELLER-A 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +VI +E D + L + +PN +II D LK+ E+ + P +++ANLPY I Sbjct: 79 GQVIAVELDDKLVNALTEKFKAYPN-FKIIHSDILKISPEEILGQNIPYKLVANLPYYIT 137 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + +L ++ A+ P E + ++ QKEV + + A+ G L++ + ++ + Sbjct: 138 SAVLRQFLEAEIKP---ELMVVMVQKEVAKNMVAKTGDM--GLLTLSVRFYGNPALVATV 192 Query: 191 SPHVFFPSPKVTSTVIH-FIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 F+P P+V S ++ IP + K+ + FG RRKTL +L + G + Sbjct: 193 PAGAFYPPPEVDSAIVKVVIPQTTIMDGVSAVDFFKLARAGFGTRRKTLLNALAQGLGIS 252 Query: 249 ------LLHQAGIETNLRAENLSIEDFCRIT 273 LL ++GI+ RAE LS+E++ R+ Sbjct: 253 KQDILLLLERSGIDPARRAETLSMEEWKRLC 283 >gi|75911082|ref|YP_325378.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413] gi|122064280|sp|Q3M3F3|RSMA_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|75704807|gb|ABA24483.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413] Length = 271 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 13/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P++ Q++L L I +++ ++EIG G G LT+ LL L ++ +E Sbjct: 2 VRPRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPL-VEALLAVEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLL 134 D+ +L Q N L ++Q D L +D F P +++AN+PYNI ++ Sbjct: 61 DRDLCKLLVKQLGQKENFL-LLQGDFLTLDLVANLLTFPKFQKPNKVVANIPYNITGPII 119 Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + A+ P ++S+ LL QKEV ER+ A+ S +G LSV + + D+ Sbjct: 120 EKLLGTIANPNPEPFDSIVLLIQKEVAERLYAKAGSRTFGALSVRVQYLADCEFICDVPA 179 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F P PKV S V+ P IP + L+ + + FG +RK LR +L+ + + Sbjct: 180 GAFHPPPKVDSAVVRLRPRQIQIPARDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLS 239 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL Q I RAE++S + + + N+L Sbjct: 240 QLLEQLNINPQARAEDISTQQWVELANLL 268 >gi|294508235|ref|YP_003572293.1| Dimethyladenosine transferase [Salinibacter ruber M8] gi|294344563|emb|CBH25341.1| Dimethyladenosine transferase [Salinibacter ruber M8] Length = 269 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 11/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ +GQNFL D N+ +KI + + V+E+GAG G LT+ L R + +E Sbjct: 7 FRPKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEI 65 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137 D++ +L++ + + + D + D+ + P+R+I+N PY + + +LF Sbjct: 66 DERAVEVLRERVPEAD----VRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFAL 121 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + L QKEV ERI A+ ++ YG LSVL + T+ F + P VF P Sbjct: 122 LGQRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSP 178 Query: 198 SPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P VTS V+ P P + ++ + AF +RRK LR SL E + Sbjct: 179 QPDVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPND 238 Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281 RAE L+ ++F + L + D Sbjct: 239 WGRKRAEALTPDEFATLARHLDAHAD 264 >gi|120613389|ref|YP_973067.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1] gi|226729744|sp|A1TWF5|RSMA_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120591853|gb|ABM35293.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1] Length = 253 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 128/262 (48%), Gaps = 12/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K IP+K GQ+FL D I+ I + G ++EIG G LTQ L+ R + V+E Sbjct: 2 KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135 D+ L+ +L++I+ D LKVDF + IRI+ NLPYNI T +LF Sbjct: 61 LDRDLAQRLRSH-----GQLDVIESDVLKVDFSAVAANLGAPRIRIVGNLPYNISTPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + E + QKEV +R+ AQ + YGRLSV+ WR + + P F Sbjct: 116 HLLEHVG---VVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPESF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S V+ +PH P P L+++ Q AF +RRK LR +L R Sbjct: 173 DPPPRVDSAVVRMVPHAAPAPVAPRLLEELVQVAFSQRRKLLRHTLGRWLEARQFTGT-F 231 Query: 256 ETNLRAENLSIEDFCRITNILT 277 +T RAE + + D+ + Sbjct: 232 DTQRRAEEVPVADYVALAQACA 253 >gi|229587025|ref|YP_002845526.1| dimethyladenosine transferase [Rickettsia africae ESF-5] gi|259494256|sp|C3PPC3|RSMA_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|228022075|gb|ACP53783.1| Dimethyladenosine transferase [Rickettsia africae ESF-5] Length = 301 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + +++ P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRAILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113 + VIE D++ P+L +I +PN L II+ DALK++ Sbjct: 63 KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121 Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 +I + II+NLPY+IGT L+ W+ S+TL+ QK Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAQ---LITSMTLMLQK 178 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PI 215 EV ERI A ++ YGRLSV+ K FD++P F+P PKV S ++ IP N P Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIVKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSPS 238 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273 + +++IT+ AF RRK ++ SLK L +L Q I N RAENL+ +D+ RI Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRIA 298 Query: 274 NIL 276 IL Sbjct: 299 EIL 301 >gi|108801227|ref|YP_641424.1| dimethyladenosine transferase [Mycobacterium sp. MCS] gi|123178211|sp|Q1B416|RSMA_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|108771646|gb|ABG10368.1| dimethyladenosine transferase [Mycobacterium sp. MCS] Length = 294 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 127/286 (44%), Gaps = 20/286 (6%) Query: 1 MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT+ + ++ + P+K GQNF+ D N +++I +SG V+++G G G Sbjct: 1 MTIRLLGRTEIRRLAKDIDFRPRKSFGQNFVHDANTVRRIVSASGVHRHDHVLKVGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115 +LT LL GA V +E D L + H NRL ++ D L + N Sbjct: 61 SLTLALLDRGAH-VTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN- 118 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 P ++ANLPYN+ L + ++ P S+ ++ Q EV ER+ A YG S Sbjct: 119 -QPTALVANLPYNVAVPALLHLLAE---FPTIRSVMVMVQAEVAERLAADPGGKDYGVPS 174 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFG 231 + +SP VF+P P+V S ++ + P P + + + AF Sbjct: 175 AKVRFYGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFA 234 Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 +RRKT R + G L A I+ + R E L+I DF R+ Sbjct: 235 QRRKTSRNAFAEWAGSGNESARRLLAASIDPSRRGETLAIADFVRL 280 >gi|291567875|dbj|BAI90147.1| dimethyladenosine transferase [Arthrospira platensis NIES-39] Length = 274 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 13/268 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L I E++ ++EIG G G LT+ LL A V+ IE D Sbjct: 5 QPRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEID 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135 + L + N L ++Q D L D F P +++AN+PYNI ++ Sbjct: 64 RDLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIE 122 Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + P ++++ LL QKEVG+R+ A+ +S +G LSV + + + + Sbjct: 123 GLLGTIAKPALKPFDAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S V+ P P + L+ + + F RRK LR +LK +L+Q Sbjct: 183 AFYPPPKVDSAVVRLRPRPIASPAQNPQLLETLVKLGFSTRRKMLRNNLKSQVEPQILNQ 242 Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276 I +RAE+LS++ + +++N+L Sbjct: 243 LLETLDINPQVRAEDLSLQQWVQLSNLL 270 >gi|89898917|ref|YP_521388.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118] gi|119365053|sp|Q223E6|RSMA_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|89343654|gb|ABD67857.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118] Length = 261 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 88/272 (32%), Positives = 139/272 (51%), Gaps = 20/272 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I +K GQ+FL D +++ I ++ G G ++EIG G LTQ L+ ++ VIE Sbjct: 2 KHIARKRFGQHFLTDGAMIEAIVDAIGPRPGQAMVEIGPGLAALTQPLVERLG-QLTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135 D+ L+ HP +L +I+ D LKVDF + ++ +R++ NLPYNI T +LF Sbjct: 61 LDRDLAARLR----AHP-QLVVIESDVLKVDFAQVAQALTTTKLRVVGNLPYNISTPILF 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + ++ + E + QKEV +R+ A + YGRLSV+ WR + + P F Sbjct: 116 HLLN---FIDVIEDQHFMLQKEVIDRMVAGPCTAAYGRLSVMLQWRYAMENVLLVPPESF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG- 254 P P+V S V+ +PH+NP L ++ Q AF +RRK LR +L + L Q G Sbjct: 173 EPPPRVNSAVVRMVPHVNPAAVDGHLLSELVQVAFSQRRKLLRHTLGQW-----LQQKGY 227 Query: 255 ---IETNLRAENLSIEDFCRITNILTDNQDIA 283 + RAE + + ++ + L + A Sbjct: 228 ADEFDVQRRAEEVPVAEYLALALKLATHSQAA 259 >gi|197124132|ref|YP_002136083.1| dimethyladenosine transferase [Anaeromyxobacter sp. K] gi|220918912|ref|YP_002494216.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1] gi|226729750|sp|B4UDZ6|RSMA_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807855|sp|B8J7H0|RSMA_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|196173981|gb|ACG74954.1| dimethyladenosine transferase [Anaeromyxobacter sp. K] gi|219956766|gb|ACL67150.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 284 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 23/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + S + +L Y + KK GQNFL D +L IA + G V+E+GAG G+LT Sbjct: 1 MTDHYPSPRALLDRYDLRAKKSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---------F 113 LL GAR V +E+D+ +L+ + +R+ +++ DA ++D+ Sbjct: 61 ARLLARGAR-VAAVERDRDMVRVLR---GELGDRITLLEADAARLDYADLAARFGAAAAA 116 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + ++ NLPY++ + +LF+ + L Q+EV ER+ A S +G Sbjct: 117 GEGPRLAVVGNLPYHLTSPILFSILDQVAH---VSRAVFLLQREVAERLAAPPASRDWGV 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGK 232 LSVL ++ + P F+P PKV S V+ + +++ + FG+ Sbjct: 174 LSVLLQREADVSVERIVPPGAFWPPPKVASAVLCALFRPPADAVADPARFRRLVKAGFGQ 233 Query: 233 RRKTLRQSL--KRLGGENLLH----QAGIETNLRAENLSIEDFCRITNIL 276 RRKTLR +L +L L AG++ R E L++ ++ + L Sbjct: 234 RRKTLRNALGSAKLADPARLEAAFAAAGVDPGRRGETLTLAEWAALERTL 283 >gi|118600867|sp|Q2GGH6|RSMA_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 263 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 102/262 (38%), Positives = 149/262 (56%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI PKK + Q F+ +I +I +G++ ++IEIG G G +T +L +K+I IE Sbjct: 6 KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD++ I + I + + E I DAL +D I P+++IANLPY+I T LL W Sbjct: 66 KDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIATTLLIKW 123 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F+ S TL+FQKEV +RI AQ N+ +YG LS+L + M D P +F P Sbjct: 124 M---DYINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFGPEIFSP 180 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254 PKV S+VI+ I P L ++ + F +RRK +R +LK+L + +L Sbjct: 181 QPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADEMLESLN 240 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I+ NLR ENLSIE FC+ITN + Sbjct: 241 IDNNLRPENLSIEQFCQITNCI 262 >gi|317054978|ref|YP_004103445.1| dimethyladenosine transferase [Ruminococcus albus 7] gi|315447247|gb|ADU20811.1| dimethyladenosine transferase [Ruminococcus albus 7] Length = 286 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 18/282 (6%) Query: 3 MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+N S+ +K ++ + K +GQNFL++ ++ +IAE + G VIEIG G G Sbjct: 1 MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKAGYGVIEIGTGVGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 LT L A KV+ IE D + P+L++ ++H N +++I D +KVD K Sbjct: 61 LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMKVDLHKLIEDEFSGM 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + + ANLPY I + +L + S+T++ QKE G R+ A + G ++V Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRL---RIRSVTVMVQKEAGTRLCAPLGTRDMGAVTVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + ++ ++F++S F P+P V S V+ F N K+ + AF +RRK Sbjct: 176 VNYFSEPKILFNVSRGSFMPAPNVDSCVVRFDIKENTPEGVTDEAFFFKMVRAAFSQRRK 235 Query: 236 TLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCR 271 TL S+ G + + +G++ N+R E L +++F R Sbjct: 236 TLVNSVSAGLGADKQTVAAAVENSGLQANVRPEQLLMKEFVR 277 >gi|118473872|ref|YP_889677.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2 155] gi|118175159|gb|ABK76055.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2 155] Length = 297 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 119/272 (43%), Gaps = 19/272 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 P+K GQNF+ D N +++I +SG V+E+G G G+LT LL GAR V Sbjct: 2 AKEIDFRPRKAFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLGSLTLALLDRGAR-V 60 Query: 74 IVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +E D L + H NRL ++ D L + P ++ANLPYN+ Sbjct: 61 TAVEIDPLLARQLPTTIADHSHSEINRLTVLNRDILTLMPGDL--EEQPTALVANLPYNV 118 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 L + ++ P ++ ++ Q EV ER+ A+ YG S + Sbjct: 119 AVPALLHLLAE---FPSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFYGNVRRHGM 175 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLG 245 +SP VF+P P+V S ++ + P P + + + F +RRKT R + Sbjct: 176 VSPTVFWPIPRVYSGLVRIDRYETSPWPMDEAFRDEVFNLIDIGFAQRRKTSRNAFAEWA 235 Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRI 272 G L A I+ R E LSI DF R+ Sbjct: 236 GGGNESAERLLAARIDPARRGETLSINDFVRL 267 >gi|329941211|ref|ZP_08290490.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045] gi|329299742|gb|EGG43641.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045] Length = 302 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 26/291 (8%) Query: 3 MNNKSHS--------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54 M+N S S ++ + + P K GQNF++D N +++I ++ V+E+ Sbjct: 1 MSNPSPSDALLGAADIRELAGVLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPADVVVEV 60 Query: 55 GAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE 110 G G G+LT LL A +V +E D L +R ++ DAL+V Sbjct: 61 GPGLGSLTLALLE-AADRVTAVEIDDVLAGALPATVAARMPGRADRFALVHSDALRVTE- 118 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 +P ++ANLPYN+ +L + + P E ++ Q EV +R+ A S Sbjct: 119 --LPGPAPTALVANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAAGPGSKV 173 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQE 228 YG SV W + I +VF+P+P V S ++ P+ + + Sbjct: 174 YGVPSVKANWYAEVRRAGSIGRNVFWPAPNVDSGLVSLTRRAEPVKTTAAKAEVFAVVDA 233 Query: 229 AFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 AF +RRKTLR + E L AG+ R E L++E+F RI Sbjct: 234 AFAQRRKTLRAALAGWAGSAAAAEAALVAAGVPPQARGEALTVEEFARIAE 284 >gi|238758993|ref|ZP_04620164.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236] gi|238702804|gb|EEP95350.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236] Length = 232 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 ++EIG G G LT+ + + VIE D+ L Q ++L I Q+DA+K++F Sbjct: 1 MVEIGPGLGALTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFS 58 Query: 111 KFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + +R+ NLPYNI T L+F+ S + + QKEV R+ A NS Sbjct: 59 ELAEQAGQSLRVFGNLPYNISTPLMFHLFSYTNA---IHDMHFMLQKEVVNRLVAGPNSK 115 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQ 227 YGRL+V+ + + ++ P F P+PKV S V+ IPH+N P P + L +IT Sbjct: 116 AYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITT 175 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 +AF +RRKT+R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 176 QAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 225 >gi|315656046|ref|ZP_07908944.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333] gi|315490110|gb|EFU79737.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333] Length = 309 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 144/297 (48%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119 LG KVI IE DQ+ L +QH L ++ DAL++ D E ++P Sbjct: 66 ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLEIPAGWAAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPNLESALVMVQAEVADRWVAGVADDAYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFI------PHLNPIPCCLESL----------- 222 W + F + +VF+P P V STV+ F + LE+L Sbjct: 182 WWGRTKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLREDLKLDLENLTDEAIETLRQE 241 Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273 AF +RRKTLRQSL G LL AGI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPDAAAVLLESAGIIPGLRAERLSVTDFTKIA 298 >gi|189182934|ref|YP_001936719.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda] gi|189179705|dbj|BAG39485.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda] Length = 273 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 98/276 (35%), Positives = 152/276 (55%), Gaps = 15/276 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + +KI K +GQ+FLLD NI KI + + G V+E+G GPG LT+ +L Sbjct: 5 PTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNPITGKVVLEVGPGPGGLTRAIL 64 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 +K+IVIEKD F +L +I + ++LE+I DAL D S+ I II+NLP Sbjct: 65 AHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNI--ESNRIIIISNLP 122 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNIGT+L+ W+ F E + ++ Q EV ERIT+ +S YGR++VL + Sbjct: 123 YNIGTQLIVQWLHQ---ISFVEYMIIMLQDEVVERITSPHSSKMYGRITVLAQIVSDVRK 179 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245 F +S F P PKV S+V+ P + + +E+++KIT+ AF RRK L+ L L Sbjct: 180 CFKVSSRAFNPPPKVDSSVMLVSPKKHQLDRNTIENVQKITKLAFSTRRKKLKNCLSHLL 239 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L+ + + R E L+ E + +++ IL Sbjct: 240 KSINITDEILNA---QLHQRPEQLTPEQYVQLSRIL 272 >gi|326797450|ref|YP_004315269.1| ribosomal RNA small subunit methyltransferase A [Sphingobacterium sp. 21] gi|326548214|gb|ADZ76599.1| Ribosomal RNA small subunit methyltransferase A [Sphingobacterium sp. 21] Length = 270 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 124/263 (47%), Gaps = 10/263 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + KK++GQ+FL D N K+I + G V+E+G G G L+ LL + +I+ Sbjct: 14 VRAKKHLGQHFLTDKNTAKRIVNALRPEKGFDKVLEVGPGMGILSDFLLEDKRFESWLID 73 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + LK RL I D L +DF F P+ II N PYNI +++LF Sbjct: 74 LDIESVEFLKTKYPSLDKRL--IHGDFLLLDFASVF--PGPLAIIGNFPYNISSQILFKV 129 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + L +FQKEV ER A+ YG LSV +F + F P Sbjct: 130 LEHR---HQVIELVGMFQKEVAERCAAKPGGKDYGILSVFLQAYYDIAYLFTVKAGAFNP 186 Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + + C +KI + F +RRKTLR +L + + + Sbjct: 187 PPKVLSGVIRLERNSIDRLACNENLFQKIVKAGFNQRRKTLRNALSVIADKARMPNHPF- 245 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 +LRAE LS++DF +TN + + Sbjct: 246 LDLRAERLSVDDFIELTNEIEKS 268 >gi|68171878|ref|ZP_00545205.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa] gi|88658336|ref|YP_507457.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas] gi|67998701|gb|EAM85426.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa] gi|88599793|gb|ABD45262.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas] Length = 277 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 102/262 (38%), Positives = 149/262 (56%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI PKK + Q F+ +I +I +G++ ++IEIG G G +T +L +K+I IE Sbjct: 20 KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 79 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD++ I + I + + E I DAL +D I P+++IANLPY+I T LL W Sbjct: 80 KDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIATTLLIKW 137 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F+ S TL+FQKEV +RI AQ N+ +YG LS+L + M D P +F P Sbjct: 138 M---DYINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFGPEIFSP 194 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254 PKV S+VI+ I P L ++ + F +RRK +R +LK+L + +L Sbjct: 195 QPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADEMLESLN 254 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I+ NLR ENLSIE FC+ITN + Sbjct: 255 IDNNLRPENLSIEQFCQITNCI 276 >gi|296118236|ref|ZP_06836817.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM 20306] gi|295968794|gb|EFG82038.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM 20306] Length = 280 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 18/282 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ ++ + + P K GQNFL D N +++I ++ D V+E+G G G+ Sbjct: 1 MSKLLGPVEIRNLAEKLDVSPTKKWGQNFLHDPNTIRRIVAAADLTDDDHVVEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 LT LL A V +E D + L + + +H ++L ++ DAL++D E+ Sbjct: 61 LTLGLLDEAAH-VTAVEIDPRLAGELPATVQWRAPEHVDKLTLLHKDALRIDGEEL---G 116 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +P ++ANLPYN+ +L + + P + + ++ Q EV +R+ A S YG SV Sbjct: 117 TPTALVANLPYNVAVPVLLHILE---LYPSLQRVLVMVQLEVADRLAADPGSKIYGVPSV 173 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 + +I HVF+P+P + S ++ + P + L + AF +RRKT Sbjct: 174 KASFYGNVRKAGNIGKHVFWPAPNIESGLVRIDLY--PPRERPKKLWPLIDAAFAQRRKT 231 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 LR +L G E L +AGIE LR E +SI+DF R+ Sbjct: 232 LRAALSGFYGSGAAAEQALREAGIEPTLRGEKISIDDFLRLA 273 >gi|21357273|ref|NP_648499.1| mitochondrial transcription factor B1 [Drosophila melanogaster] gi|74870888|sp|Q9VTM5|TFB1M_DROME RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; AltName: Full=d-mtTFB1; Flags: Precursor gi|17862606|gb|AAL39780.1| LD40326p [Drosophila melanogaster] gi|23093638|gb|AAF50022.2| mitochondrial transcription factor B1 [Drosophila melanogaster] gi|220946184|gb|ACL85635.1| mtTFB1-PA [synthetic construct] gi|220955884|gb|ACL90485.1| mtTFB1-PA [synthetic construct] Length = 330 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 19/293 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ Y++ +K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 17 PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPGGITRS 76 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120 +L ++++++EKD +F +LK+ +S + +I DD L+ + E+ + S I Sbjct: 77 ILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIH 136 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP+ I TRLL NW+ + +TL FQ+EV ERI A RLS Sbjct: 137 LIGNLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLS 196 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ M F I F P P+V V+ IP P ++++ + F R+ Sbjct: 197 VMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRHIFSMRQ 256 Query: 235 KTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R+ L E L +A ++ LR L++E R+ + +++ Sbjct: 257 KYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCLRLAEVYSEH 309 >gi|94986964|ref|YP_594897.1| dimethyladenosine transferase [Lawsonia intracellularis PHE/MN1-00] gi|118600874|sp|Q1MR01|RSMA_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94731213|emb|CAJ54575.1| rRNA (adenine-N6,N6)-dimethyltransferase [Lawsonia intracellularis PHE/MN1-00] Length = 271 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 129/260 (49%), Gaps = 10/260 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQ+FL D I +I + +G + EIG G G LT+ + +++++EK Sbjct: 5 FRPKKSLGQHFLKDTAIAYRIVKLLDIHEGENIFEIGPGQGALTRHIYGYNPGQLLLVEK 64 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + + Q+ +++ I DALK +E ++I+NLPYN+G+ L+++ + Sbjct: 65 DSCWVDYHSSVKQQNVSKVTIHHLDALKFSWETL---CGSWKVISNLPYNVGSALIWDIV 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + QKEV +R+ A + YG LSV K F + PH F+P Sbjct: 122 SRVQ---SMSRAVFMVQKEVADRLCACPGTKSYGVLSVWVQSFAKVEWGFIVKPHSFYPQ 178 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAG 254 PKV S ++ P P ++ I ++ F RRK ++ L+++G N L + G Sbjct: 179 PKVDSAIVTLYPKPREEQPKNSKTFAWIIKQCFQHRRKQMQSILRKIGFLNYYESLERIG 238 Query: 255 IETNLRAENLSIEDFCRITN 274 I + R E+LS + F +++ Sbjct: 239 ISPSARPESLSNQLFQQLSQ 258 >gi|15827037|ref|NP_301300.1| dimethyladenosine transferase [Mycobacterium leprae TN] gi|221229515|ref|YP_002502931.1| dimethyladenosine transferase [Mycobacterium leprae Br4923] gi|27151599|sp|Q9CD52|RSMA_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807875|sp|B8ZU59|RSMA_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13092584|emb|CAC29749.1| putative dimethyladenosine transferase [Mycobacterium leprae] gi|219932622|emb|CAR70334.1| putative dimethyladenosine transferase [Mycobacterium leprae Br4923] Length = 306 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 19/291 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ ++ + P+K +GQNF+ D N ++++ +S V+E+G G G+LT LL Sbjct: 16 RTEIRWLVKELECRPRKSLGQNFVHDANTVRRVVSTSRVNRSDFVLEVGPGFGSLTLALL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122 GA V IE D L ++H N RL + D L + P ++ Sbjct: 76 DCGA-AVSAIEIDPVLAGRLPQTVAEHSNNEIHRLTVCNRDVLSFRRGDLA--TEPTALV 132 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L + ++ P ++T++ Q EV ER+ A+ YG SV + Sbjct: 133 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKDYGVPSVKLSFFG 189 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238 + +SP VF+P P+V S ++ + ++ ++ + AF +RRKT R Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRVDRYATSPWPTDDAFRRQVFELVDIAFTQRRKTSR 249 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 + + G N L A I+ R E LSI+DF R+ D A+ Sbjct: 250 NAFVKWAGSSNESANRLLAASIDPARRGETLSIDDFVRLLRRSDGRDDAAV 300 >gi|304382942|ref|ZP_07365424.1| dimethyladenosine transferase [Prevotella marshii DSM 16973] gi|304335967|gb|EFM02215.1| dimethyladenosine transferase [Prevotella marshii DSM 16973] Length = 280 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 142/274 (51%), Gaps = 15/274 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL+I ++IA++ + + ++E+G G G LTQ L+T R+V V+E Sbjct: 4 VRPKKHLGQHFLTDLDIARRIADTVDACPRLPILEVGPGMGMLTQFLVT-KERQVRVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + +I+++D L+++ +K FN P + N PY+I +++ F + Sbjct: 63 DREAATYLHKHFPLMHD--DILREDFLRMNLQKVFN-GQPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV R+ A + + YG LSVL +F + VF P Sbjct: 120 DNKDLIP---CCTGMIQREVALRMAATEGNKTYGILSVLMQAWYDVEYLFTVDETVFNPP 176 Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + + + C ++I + FG+RRK LR SL+++ A + Sbjct: 177 PKVKSAVIRMTRNGVTDLGCDERLFRRIVKAVFGQRRKMLRVSLRQIFSSIPASPAFYDR 236 Query: 258 ---NLRAENLSIEDFCRITNI----LTDNQDIAI 284 R E LSI F +TN+ L +D+A+ Sbjct: 237 DIMTRRPEQLSIPQFVELTNLVEAELRQLRDVAV 270 >gi|258592924|emb|CBE69233.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [NC10 bacterium 'Dutch sediment'] Length = 312 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 18/283 (6%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 H + +L Y ++PK+ +GQ+FL+ + I ++ V+EIG G G LT+ L Sbjct: 15 HETRALLRQYHLLPKRGLGQSFLVSPTVRDLILRAADVGPQDLVVEIGPGTGVLTEGLAE 74 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIA 123 A ++I IE+D +L + P + +I DAL+ DF P ++++ Sbjct: 75 Q-AGRLIAIERDPGLHRLLAERLGDRP-TVSLICGDALEFDFVNVCGTMCPAYTRAKLVS 132 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY++ T L+ I + F + Q+EV +R+ A Y L++ + Sbjct: 133 NLPYSVATPLILQLIPLQRYFSFLLVMV---QREVAQRLLASPGEEGYSALTLRCRYEAD 189 Query: 184 ATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + + F+P P V ST++ +P L +I + AFG+RRK LR +L Sbjct: 190 VSAVAQVPRTAFYPKPAVDSTLVRLDLLPGPKVTVHSPGLLFRIVRAAFGQRRKMLRNAL 249 Query: 242 KRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G + +L AGI+ R E L++++F ++ + L Sbjct: 250 LNAGIMTEPADLDRILADAGIDPKRRGETLNLDEFAQLADRLY 292 >gi|56416752|ref|YP_153826.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries] gi|222475116|ref|YP_002563532.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str. Florida] gi|255003096|ref|ZP_05278060.1| dimethyladenosine transferase [Anaplasma marginale str. Puerto Rico] gi|255004222|ref|ZP_05279023.1| dimethyladenosine transferase [Anaplasma marginale str. Virginia] gi|62900476|sp|Q5PAV9|RSMA_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807856|sp|B9KIG4|RSMA_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56387984|gb|AAV86571.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries] gi|222419253|gb|ACM49276.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str. Florida] Length = 270 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 96/270 (35%), Positives = 153/270 (56%), Gaps = 9/270 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + K +GQNF+LD ++ +KI +GS++G +IE+G G G +T+++L + Sbjct: 1 MRTIRHKAYKSLGQNFILDPSMAEKIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + IEKD++ P+ K + ++PN I+ D L+++ E IS+P ++IANLPYNI L Sbjct: 61 LAIEKDRRLSPMHKGLMQKYPN-YRYIEHDVLEINLETM--ISAPSKMIANLPYNISVIL 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + + +E LTL+FQKEV ER+ A+ + Y LSVL + D+ P Sbjct: 118 LLRMLK---YIHNFEKLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPG 174 Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK--RLGGENLL 250 F P PKV S+V++ P N P + K+ ++AFG +RKT+R +L + LL Sbjct: 175 AFSPPPKVCSSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALL 234 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + I ++RAENLS+E C ++N L Q Sbjct: 235 AECRIPPSVRAENLSVEQLCAVSNFLQSRQ 264 >gi|113474554|ref|YP_720615.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101] gi|110165602|gb|ABG50142.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101] Length = 281 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 135/270 (50%), Gaps = 13/270 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P+K Q++LL L KI +++ + ++EIG G G LT LL L A V+ +E Sbjct: 3 IQPRKRFAQHWLLSDKALNKIIQAAELSESDRILEIGPGTGVLTHRLLPLAA-SVVAVEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLL 134 D+ L + N L ++Q D L +D E +F +P +++AN+PYNI +L Sbjct: 62 DRDLCQKLVKKFGRVKNFL-LLQGDILSLDLETNLAQFIGFQNPHKVVANIPYNITGLIL 120 Query: 135 FNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + + P ++ + LL QKEV +RI A+ +S Y LSV + K + D+ Sbjct: 121 EKLLGTISQPLTNTYDLIVLLLQKEVADRICAKPDSKAYSSLSVKIQYLAKCEFICDVPA 180 Query: 193 HVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F+P PKV S VI P L P + ++ + + F +RK LR +LK + + Sbjct: 181 KAFYPPPKVDSAVIRLRPQLIEPQANNPKQMEMLVKLGFASKRKMLRNNLKAVVERDRLF 240 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNILT 277 LL + RAE+L+++++ + N L Sbjct: 241 ELLENLKVNPQSRAEDLTVQEWVTLANSLE 270 >gi|113953175|ref|YP_730799.1| dimethyladenosine transferase [Synechococcus sp. CC9311] gi|123031699|sp|Q0I9S3|RSMA_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|113880526|gb|ABI45484.1| dimethyladenosine transferase [Synechococcus sp. CC9311] Length = 277 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 11/275 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L++ +L +I E++ DG V+E+G G G LT+ LL A + +E Sbjct: 5 GHTARKRFGQHWLINERVLDRIVEAAELQDGDRVLEVGPGRGALTERLLASAAAAIHAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + HP + + + D L V E +++AN+PYNI LL Sbjct: 65 LDRDLVAGLQQTFASHP-KFSLQEGDVLSVPLE-LSGGVPANKVVANIPYNITGPLLDRL 122 Query: 138 ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I P + + L LL Q EV +RI A+ ++ LSV + + + + P F Sbjct: 123 IGRLDRPVDFSYQRLVLLVQHEVAQRIRARPGHSNFSALSVRMQLLGRCSHVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-- 250 P PKV S VI P P ++++ + AF RRK LR +L +G +LL Sbjct: 183 QPPPKVQSEVICIDPFPPERRPTAALSRGVERLLKMAFLSRRKMLRNTLAPVGSTDLLQS 242 Query: 251 --HQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 +AGI R ++++ E + + L +A Sbjct: 243 LAEEAGISLQQRPQDVAPEAWVALAKGLNQVDSVA 277 >gi|121606957|ref|YP_984286.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2] gi|166221686|sp|A1VUN7|RSMA_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|120595926|gb|ABM39365.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2] Length = 279 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 26/276 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I +K GQ+FL D I++ I E+ L G ++EIG G +T+ L+ + VIE Sbjct: 2 KHIARKRFGQHFLTDRLIIEGIVEAIAPLPGQPMVEIGPGLAAMTRPLVERLGH-LTVIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----------------SSPIRI 121 D+ L+ +L +I+ D L+VDF + +R+ Sbjct: 61 LDRDLARQLR-----SNPQLTVIESDVLRVDFLQLAEQVQSAGALRGAASQTPSPCKLRV 115 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 + NLPYNI T +LF+ + A E + QKEV +R+ A ++ YGRLSV+ WR Sbjct: 116 VGNLPYNISTPILFHLLDAVE---VIEDQHFMLQKEVIDRMVAMPSTSDYGRLSVMLQWR 172 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + P F P P+V S ++ +PH P ++ L ++ + AF +RRK LR +L Sbjct: 173 YAMENVLYVPPQSFDPPPRVDSAIVRMVPHAEPARLDVKLLSELVRVAFSQRRKLLRHTL 232 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + ++ + RAE + + ++ + + Sbjct: 233 GQWLEQHAFSG-EFDVKRRAEEVPVAEYLALAQQVQ 267 >gi|307718556|ref|YP_003874088.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192] gi|306532281|gb|ADN01815.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192] Length = 283 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 135/287 (47%), Gaps = 17/287 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + ++ +++ + + K GQ+FL+ ++L +I ++ G V EIG G G Sbjct: 1 MGETSYPIRMRELMARHGLSALKRFGQHFLVRDDVLGRIVQALDLHPGEQVWEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT LL G +V+ E D+ F IL++ P L I++ D + + + P R Sbjct: 61 LTAHLLDEGV-EVVGFEIDRGFVSILREEFGGAP--LTIVEGDV-RDTWRTVYATRVPHR 116 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ NLPYN+ T ++ +++ P + QKEV ER+ A S YG LSV+ Sbjct: 117 VVGNLPYNVATSIILDFLEGGLIVPQ----VFMVQKEVAERMAASVGSSAYGALSVIVAT 172 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239 + ++F + P F P PKV S+V+ P +P+P + + F RRK L+ Sbjct: 173 FYRCELLFHVPPTAFHPRPKVWSSVLRLHPVASPVPREHIPPFLSFVWDLFRYRRKMLKN 232 Query: 240 SLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L R G +LL + GI+ LRAE L ++ + + Sbjct: 233 VLLRSPLAARGVEGVVSLLERVGIDPTLRAEQLPLDRIHALWKEWKE 279 >gi|27904634|ref|NP_777760.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839464|sp|P59524|RSMA_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|27904031|gb|AAO26865.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 260 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 84/266 (31%), Positives = 129/266 (48%), Gaps = 11/266 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + K +GQNFL+D ++ +I +IEIG G G LT + + K+ Sbjct: 2 VKKNTFFANKNLGQNFLVDSEVINRIINVINPKSHDFMIEIGPGLGALTYPICKIL-HKL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTR 132 VIE D L S +E+ +D LK +F N S +RII NLPYNI Sbjct: 61 FVIEHDNNLGTRLLKDIS----NIEVFVEDVLKFNFLNLINNSFKSVRIIGNLPYNISIP 116 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +LF + +FQKEV ++ A + Y RLS++ + +FD+ Sbjct: 117 ILFYLFKFHNN---IIDMNFMFQKEVASKLLAIPGTKSYSRLSIIAQYYCDIDFLFDVVA 173 Query: 193 HVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F+P PKVTS+ + +P N + L +T AF +RRK ++ SL L ++ L Sbjct: 174 QSFYPIPKVTSSFVRLVPRKVFNLYVRDINQLSNVTALAFQQRRKIVKNSLSSLFNDDAL 233 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 + GI+ LRAENLS++ +C ++N + Sbjct: 234 RKLGIDPLLRAENLSVKQYCLLSNHV 259 >gi|222100031|ref|YP_002534599.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359] gi|254808100|sp|B9K8F0|RSMA_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|221572421|gb|ACM23233.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359] Length = 260 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 18/262 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y I KK++GQ FL D I K+I + + V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGIRLKKHLGQVFLSDDRIAKRIVKEADLKPDDVVVEIGAGAGTLTEELAKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ PIL++ S++PN +E+ +D LK ++ ++N+PY++ + Sbjct: 66 IAYEIDEGLAPILQERLSKYPN-VELRFEDFLK-----ARDVPEEAICVSNIPYSVTGPI 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I ++ ++ QKEVGERI ++ YG LSV+ + +FD+S Sbjct: 120 MEKIIEWR-----FKKAIVMVQKEVGERILSKPGRKSYGYLSVVVQTFYEVRKLFDVSRS 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V S V+ + KK F K+RKTL+ +L+ + Sbjct: 175 YFVPNPEVDSVVVEMKRKA--VEIDFPQFKKFVSMIFSKKRKTLKNNLRPFLS--VFE-- 228 Query: 254 GIETNLRAENLSIEDFCRITNI 275 G++ + RAE LSIE+ + NI Sbjct: 229 GVDLSRRAEQLSIEEIIELYNI 250 >gi|172040243|ref|YP_001799957.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM 7109] gi|171851547|emb|CAQ04523.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM 7109] Length = 366 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 32/289 (11%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNF+ D N ++KI ++ VIE+G G G+LT LL Sbjct: 67 EIRQLAEELGVNPTKKLGQNFVHDPNTVRKILHAADVGPQDHVIEVGPGLGSLTLALLG- 125 Query: 69 GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNIS--SPIRII 122 +V IE D L ++H ++L +I DALKV + +P ++ Sbjct: 126 AVGEVTAIEIDPLLAGRLPRTVAEHAAPVADKLHLILRDALKVTAADWAEQGLAAPTALV 185 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P + ++ Q EV +R+ A+ S YG SV + Sbjct: 186 ANLPYNVSVPVLLHLLEQ---FPTISRVLVMVQLEVADRLAAKPGSKIYGVPSVKARYFG 242 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESL--------------KKI 225 I +VF+P+PKV S ++ P E++ + Sbjct: 243 DTFRAATIGKNVFWPAPKVDSGLVRIDRWGVGDKPAAPWAEAVASSGFAEEVVRGETFAL 302 Query: 226 TQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDF 269 AF +RRKTLR +L G E++L AGI+ R E L E+F Sbjct: 303 ADAAFLQRRKTLRAALSGHFGGGQQAEDVLRAAGIDPKQRGEKLGAEEF 351 >gi|29830130|ref|NP_824764.1| dimethyladenosine transferase [Streptomyces avermitilis MA-4680] gi|33516923|sp|Q82HC3|RSMA_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|29607240|dbj|BAC71299.1| putative dimethyladenosine transferase [Streptomyces avermitilis MA-4680] Length = 295 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 19/289 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++G V+E+G G G+LT LL Sbjct: 12 PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +VI +E D L + R ++ DA+ V + P ++ Sbjct: 72 E-AADRVIAVEIDDVLAGALPATIAARMPERAERFALVHSDAMHV---RELPGPPPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAADPGSRVYGVPSVKANWHA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ + PI + + AF +RRKTLR Sbjct: 185 EVKRAGSIGRNVFWPAPNVDSGLVSLVRRTEPIKTTASKTEVFAVVDAAFAQRRKTLRAA 244 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILTDNQDIA 283 + E L AG+ R E+L++E+F RI N D+ D A Sbjct: 245 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAENRGADHADDA 293 >gi|167038515|ref|YP_001666093.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751385|ref|ZP_05492264.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus CCSD1] gi|320116911|ref|YP_004187070.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857349|gb|ABY95757.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749767|gb|EEU62792.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus CCSD1] gi|319930002|gb|ADV80687.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 273 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 16/264 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQNF+ D NIL KI +SG V+EIG G G LT+ L +KV+ E D++ + Sbjct: 12 WGQNFIFDKNILAKIVIASGVAPEDFVLEIGTGLGTLTEELAKR-VKKVVSFEIDRELYE 70 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141 K+ + + N + I+ +D +K D + N P +++ANLPY I + ++ + Sbjct: 71 ATKEKLNIY-NNVIIMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 F + +T+L QKEV ERI A + YG L+V ++ K ++F++ P VF P PKV Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKV 185 Query: 202 TSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254 S+++ P+ + + + AFG+RRK L +LK LG + ++ +A Sbjct: 186 DSSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 + R E LSIE+F + N++ D Sbjct: 246 LSHQRRGETLSIEEFTALANVIYD 269 >gi|88808454|ref|ZP_01123964.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 7805] gi|88787442|gb|EAR18599.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 7805] Length = 280 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 81/275 (29%), Positives = 126/275 (45%), Gaps = 11/275 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 P+K GQ++L D +L +I ++S V+E+G G G LTQ LL A V +E Sbjct: 5 GHSPRKRFGQHWLRDERVLDQILDASELGSDDRVLEVGPGRGALTQRLLASTAAAVHAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+D + P + + + D L+V + +++AN+PYNI LL Sbjct: 65 LDRDLVAGLQDRFADSP-QFSLREGDVLEVPL-TLPDGQRATKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I P P ++ L LL QKEV ERI A+ + + LSV + + + P F Sbjct: 123 IGRLDQPIDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAHCSSVCSVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248 P PKV S VI P P P ++ + ++AF RRK LR +L E Sbjct: 183 QPPPKVHSEVIRLDPLPQEQRPDPVTCRRVECLLKQAFLARRKMLRNTLSVSQPLCELEE 242 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + +AGI+ R + ++ + ++ L A Sbjct: 243 ITLKAGIDLRQRPQEVAPNAWVKLARGLNQADSAA 277 >gi|302560209|ref|ZP_07312551.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000] gi|302477827|gb|EFL40920.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000] Length = 296 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++G TV+E+G G G+LT LL Sbjct: 12 PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDTVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D + R ++ DA+ V +P ++ Sbjct: 72 E-AADRVTAVEIDDVLAAALPATVAARMPARAGRFALVHSDAMHVTE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + + P E ++ Q EV +R+ A S YG SV W Sbjct: 128 ANLPYNVAVPVLLHMLES---FPSIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ + P + + AF +RRKTLR Sbjct: 185 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPPKTTASRREVFAVVDAAFAQRRKTLRAA 244 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 245 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 283 >gi|170043732|ref|XP_001849529.1| mitochondrial dimethyladenosine transferase 1 [Culex quinquefasciatus] gi|167867055|gb|EDS30438.1| mitochondrial dimethyladenosine transferase 1 [Culex quinquefasciatus] Length = 345 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 29/306 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ ++ YK+ K + QNFL+D + KI +++G++ V+E+G GPG++T+ + Sbjct: 19 PLPTIRDLVRLYKLRAIKQLSQNFLMDERLTNKIVKAAGNITDHHVLEVGPGPGSITRSI 78 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISS------ 117 + R ++V+EKD++F P L+ +S R++I++ D L+ E+ F Sbjct: 79 IRKAPRHLVVVEKDRRFLPTLELLSEASAGFLRMDIVRGDILQFQTEQAFPDCPRQEWHD 138 Query: 118 ---PIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSP 169 P+ II NLP+ I TRLL NW+ + W SLTL FQKEV ERI A S Sbjct: 139 KRAPVHIIGNLPFAISTRLLINWLHEMSTRSGAWSFGRSSLTLTFQKEVAERIVAPILSE 198 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQE 228 RLSV+ ++ + F I F P P V V+ +P NP+ ++K+ + Sbjct: 199 RRCRLSVMNQIWSRPELKFIIPGKAFVPKPDVDVGVVTIVPLKNPLTTVPFPVVEKVVRH 258 Query: 229 AFGKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNI----L 276 F R+K R+ + L L A ++ R+ LS E+ RI + Sbjct: 259 IFSMRQKYCRRGVANLYPPELRDELTELTFKIADVDPLARSFQLSTEECLRIVEAYDRLV 318 Query: 277 TDNQDI 282 ++ DI Sbjct: 319 QEHPDI 324 >gi|116750733|ref|YP_847420.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB] gi|116699797|gb|ABK18985.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB] Length = 285 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 14/283 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + + P+K GQ+FL ++I + TV+EIG G G LT+ + Sbjct: 5 PFPTPRQYFRLRDTRPRKRFGQHFLDHSATAEQIVRCAEFDASDTVVEIGPGLGALTRFI 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIAN 124 L L AR + ++E D+ L++ +++ + + DA+ DF P+ ++ N Sbjct: 65 LPLAAR-LHLVELDRDLATYLEENLPA-GSQVRLHRQDAVTFDFNALAEAAGQPLVVLGN 122 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI + LLF+ + + + + QKEVG R+TA + YG LSVL + Sbjct: 123 LPYNITSPLLFHLLDSVQA---VKRAVFMVQKEVGARLTASPGTRDYGVLSVLLAVYAEV 179 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLK 242 +F + P F+P PKV S V+ P L+++ AF +RRKTL SLK Sbjct: 180 KRLFTVGPQQFYPPPKVESMVLRLDFKHPLPPDLPPFGLLRRLVSIAFQQRRKTLHNSLK 239 Query: 243 RLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 G +++ + G+ LR + L+ F + L ++ Sbjct: 240 GTYGGQGGGLQDVFAKCGVAPGLRPDALTPGQFVELCKALKES 282 >gi|86605619|ref|YP_474382.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab] gi|119365853|sp|Q2JVW2|RSMA_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86554161|gb|ABC99119.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab] Length = 279 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 122/269 (45%), Gaps = 17/269 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGIT----VIEIGAGPGNLTQMLLTLGARKVIVI 76 P+K GQ++L D + + I ++ V+EIG G G LTQ LL G V+ + Sbjct: 4 PRKRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGVH-VVAV 62 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ +L+ + P R +++ D + P ++AN+PYN+ +L Sbjct: 63 EIDRDLCRLLQKRFADQP-RFHLVEGDF-----LRLPLPPQPRLLVANIPYNLTGPILEK 116 Query: 137 WISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P +E + L+ QKE+ ER+ A S YG LSV + + ++ + P F Sbjct: 117 VLGSPAQPVRQFERIVLMVQKELAERLQAGPGSKAYGALSVRVRYLAECELICRVPPSAF 176 Query: 196 FPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250 P P+V S V+ P P P ++ + F RRK L +L L L Sbjct: 177 RPPPQVESAVVRLTPRPAPTPARDPRWFSQLVCQGFSARRKQLVNALGGLVDRQTVAAAL 236 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279 Q + RAE L + D+ ++++L + Sbjct: 237 AQLRLSPTARAEELDLPDWLALSDLLLEQ 265 >gi|21221587|ref|NP_627366.1| dimethyladenosine transferase [Streptomyces coelicolor A3(2)] gi|256787224|ref|ZP_05525655.1| dimethyladenosine transferase [Streptomyces lividans TK24] gi|289771122|ref|ZP_06530500.1| dimethyladenosine transferase [Streptomyces lividans TK24] gi|27151606|sp|Q9K3R5|RSMA_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|8894782|emb|CAB95942.1| putative dimethyladenosine transferase [Streptomyces coelicolor A3(2)] gi|289701321|gb|EFD68750.1| dimethyladenosine transferase [Streptomyces lividans TK24] Length = 286 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 124/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 12 PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L +R ++ DA+ V + +P ++ Sbjct: 72 E-AADRVTAVEIDDVLAGALPATVAARMPARADRFALVHSDAMHV---RELPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPGIERTLVMVQAEVADRLAAGPGSKVYGVPSVKANWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 185 EVKRAGSIGRNVFWPAPNVDSGLVSLVRRSEPLRTTASKAEVFAVVDAAFAQRRKTLRAA 244 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E L++E+F RI Sbjct: 245 LAGWAGSAAAAEAALVGAGVSPQARGEALTVEEFARIAE 283 >gi|282899539|ref|ZP_06307503.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505] gi|281195418|gb|EFA70351.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505] Length = 281 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P+K Q++L L I +++ ++EIG G G LT+ LL L ++ +E Sbjct: 2 VRPQKQFAQHWLRSEKALNSIVKAAECQVNDRILEIGPGTGILTKRLLPL-VDSLLAVEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134 D+ +L N L ++Q D L + +++AN+PYNI ++ Sbjct: 61 DRDLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPII 119 Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + AD P ++S+ LL QKEV +R+ A+ S ++G LSV + + + + Sbjct: 120 EKLLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPA 179 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F+P PKV S V+ +P I + L+ + + FG +RK LR +L+ + Sbjct: 180 SAFYPPPKVDSAVVRLLPRNMEIGANDPKLLENMVKLGFGCKRKMLRNNLQSVIDRESLT 239 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL I ++RAE +S+ + + N L Sbjct: 240 KLLEGLNINPHVRAEEISVSQWVSLVNSL 268 >gi|73667017|ref|YP_303033.1| dimethyladenosine transferase [Ehrlichia canis str. Jake] gi|119365025|sp|Q3YS70|RSMA_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72394158|gb|AAZ68435.1| dimethyladenosine transferase [Ehrlichia canis str. Jake] Length = 262 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 105/262 (40%), Positives = 147/262 (56%), Gaps = 8/262 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +++I IE Sbjct: 6 RIYPKKELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD + PI K I + + E I DAL +D I P++IIANLPY+I T LL W Sbjct: 66 KDSRLMPIHKKIVDEFNGKYEFILSDALNIDLRTI--IEPPVKIIANLPYHIATPLLMKW 123 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + F+ S TL+FQKEV +RI AQ N+ +Y LSVL + M D P +F P Sbjct: 124 I---NYIDFFTSFTLMFQKEVADRIVAQPNNKNYSILSVLIQLLSNVYKMEDFGPEIFSP 180 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254 PKV S+VI+ I P L ++ + FG+RRK +R +LK+L + +L Sbjct: 181 QPKVMSSVINIIVLPKPRFNVNHNKLSQVLKVTFGERRKMIRSTLKKLINNTDEILQSLN 240 Query: 255 IETNLRAENLSIEDFCRITNIL 276 I NLR ENLSIE FC+I N + Sbjct: 241 INNNLRPENLSIEQFCKIANSI 262 >gi|119718076|ref|YP_925041.1| dimethyladenosine transferase [Nocardioides sp. JS614] gi|119538737|gb|ABL83354.1| dimethyladenosine transferase [Nocardioides sp. JS614] Length = 297 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 16/279 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I +G V+E+G G G+LT LL Sbjct: 13 PADVRLLAAELDLRPTKQRGQNFVIDANTVRRIVREAGVTAEDVVLEVGPGLGSLTLALL 72 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 + A +V+ +E D L + + +R E++ DA+++ + +P ++ Sbjct: 73 AV-AGRVVAVEVDPVLAGRLPATIAAYAPAQADRFEVVLGDAMRI---QEVPGPTPTALV 128 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L T P E ++ Q EV +R+ A S YG SV W Sbjct: 129 ANLPYNVSVPVLL---HLLTLLPSLERGLVMVQAEVADRLAAAPGSKVYGVPSVKAAWFA 185 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 + +VF+P+P V S ++ + P E + + AF +RRK LR L Sbjct: 186 DVRRAGAVGRNVFWPAPNVDSGLVAWSRREPPATTATREQVFAVVDAAFAQRRKALRGVL 245 Query: 242 KRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L + L AG++ R E+L +EDF R+ L Sbjct: 246 RSLAPAESVDAALAGAGVDPLARGESLRVEDFARLAERL 284 >gi|148284255|ref|YP_001248345.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Boryong] gi|146739694|emb|CAM79504.1| dimethyladenosine transferase (rRNA methylation) [Orientia tsutsugamushi str. Boryong] Length = 273 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 97/276 (35%), Positives = 150/276 (54%), Gaps = 15/276 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + +KI K +GQ+FLLD NI KI + S+ G V+E+G GPG LT+ +L Sbjct: 5 PTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNSITGKVVLEVGPGPGGLTRAIL 64 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 +K+IVIEKD F +L +I + ++LE+I DAL D S+ I II+NLP Sbjct: 65 AHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNI--ESNRIIIISNLP 122 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YNIGT+L+ W+ F E + ++ Q EV ERI + S YGR++VL + Sbjct: 123 YNIGTQLIVQWLHQ---ISFVEYMIIMLQDEVVERIISNHCSKTYGRITVLAQIVSDVRK 179 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 F + F P PKV S+V+ P + + +E+++KIT+ AF RRK L+ L L Sbjct: 180 CFKVPSRAFNPPPKVDSSVMLVSPKKHQLDRHTIENVQKITKLAFSTRRKKLKNCLSHLL 239 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +L+ + + R E L+ E + +++ IL Sbjct: 240 TSINIPDEILNA---QLHQRPEQLTPEQYVQLSRIL 272 >gi|302552007|ref|ZP_07304349.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM 40736] gi|302469625|gb|EFL32718.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM 40736] Length = 295 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ +E+G G G+LT LL Sbjct: 12 PADIRDLATTLGVRPTKQRGQNFVIDANTVRRIVRTAQVRPDDVAVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + A +V +E D L +R ++ DA+ V +P ++ Sbjct: 72 EV-ADRVTAVEIDDVLAAALPATITARMPDRADRFALVHCDAMHVTE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPTIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 185 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTTASKAEVFAVVDAAFAQRRKTLRAA 244 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 245 LAGWAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283 >gi|268608155|ref|ZP_06141882.1| dimethyladenosine transferase [Ruminococcus flavefaciens FD-1] Length = 285 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 17/284 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + N ++++ IL + K +GQNF+++ +I KIAE + G V+EIG G G Sbjct: 1 MNLTN-INTVRDILERHGFSFSKGLGQNFIINPDICPKIAEMGNAQAGYGVLEIGTGIGV 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118 LT L A KV +E D + PIL++ S N ++I +D +K D +K Sbjct: 60 LTAELAKR-ADKVCAVEIDTRLLPILEETLSDFDN-IKIFNEDIMKCDLQKLIAEEFQGL 117 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + ANLPY I + ++ + + +S+T++ QKE +R+ A+ + G ++V Sbjct: 118 HTAVCANLPYYITSPVIMLLLESKLP---IDSITVMVQKEAAQRLCAKVGTRDSGAITVG 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRK 235 + +F++S F P+P V S VI H + K+ + F +RRK Sbjct: 175 VNYYGTVKSLFNVSRGSFMPAPNVDSAVIRIDLHSEHRLSEEDEKFFFKVVKSGFSQRRK 234 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRIT 273 T ++ L G + L G+ R E+L ++ Sbjct: 235 TAANAVSSLMGIPKEKVYSALKAVGLPETARIESLDMDQLIAFA 278 >gi|258654668|ref|YP_003203824.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233] gi|258557893|gb|ACV80835.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233] Length = 302 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 20/283 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNF+ D N +++I ++ V+E+G G G+LT L+ Sbjct: 14 EVRRLAEVLDLQPTKTLGQNFVHDGNTVRRIVAAADLRSTDHVLEVGPGLGSLTLGLVDA 73 Query: 69 GARKVIVIEKDQQFFPILKDISSQH-PNR---LEIIQDDALKVDFEKFF-------NISS 117 A +E D + +L H P R L +I DAL + ++ + Sbjct: 74 AAAV-TAVEIDPRLAALLPTTVRAHAPGRYQALNVITADALTITADRLALTDPDRMAPAD 132 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P ++ANLPYN+ ++ + ++ P ++ Q EV +R+ A S YG S Sbjct: 133 PTALVANLPYNVAVPVILHLLAE---VPTLRRALVMVQAEVADRLAADPGSKTYGVPSAK 189 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 W +A +S VF+P P V S ++ F ++ + AF +RRKTL Sbjct: 190 LAWYGRAHRAGSVSRTVFWPVPGVDSALVAFDRSPTARTGDRSAVFAVIDAAFAQRRKTL 249 Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNI 275 R +L E +L +AGI+ + R E L I +F RI Sbjct: 250 RAALADWAGSPAFAEQILTRAGIDPSARGEVLGIAEFTRIAQA 292 >gi|262341205|ref|YP_003284060.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272542|gb|ACY40450.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 259 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 90/264 (34%), Positives = 137/264 (51%), Gaps = 8/264 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + +K I +K Q FL D NI KKI ++ L+ TV+EIG G G LTQ LL +V Sbjct: 1 MQMHKSIFRKKFDQYFLKDKNIAKKIVKNLSFLNYDTVVEIGPGLGILTQYLLKHHQNQV 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +IE D++ L++ S NR II D LK E+ + II N PY+I +++ Sbjct: 61 FLIEIDRELISFLRNKFSISKNR--IIHKDFLKWSPEEIHLQN--FAIIGNFPYSISSQI 116 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + + P +FQKEV +RI + + +YG LSVL + +F ++P Sbjct: 117 LFHILKYNQYIP---ECIGMFQKEVAKRIASHEGKKNYGILSVLVQTFYEVKYLFTVNPQ 173 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 VFFP P V S V+ + C + L K + AF +RRK L+ SL+ ++ Sbjct: 174 VFFPIPNVKSAVLSLRKKNEILSCNKDLLFKCVKTAFNQRRKKLKNSLQLFNHIPNFYKI 233 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 N RAE LS+++F ++T + Sbjct: 234 PF-LNKRAEELSVQEFLQLTKEIE 256 >gi|282865480|ref|ZP_06274531.1| dimethyladenosine transferase [Streptomyces sp. ACTE] gi|282559524|gb|EFB65075.1| dimethyladenosine transferase [Streptomyces sp. ACTE] Length = 326 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+EIG G G+LT LL Sbjct: 12 PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPEDVVVEIGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V+ +E D L + +R ++ DA+ V +P ++ Sbjct: 72 E-AADRVVAVEIDDVLAGALPATVAARLPVRADRFALVHSDAMLVTE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQAEVADRLAAKPGNKVYGVPSVKAAWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238 I VF+P+P V S ++ + PI + + AF +RRKTLR Sbjct: 185 DVKRAGSIGRTVFWPAPNVDSGLVSLVRRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAA 244 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E L++E+F I Sbjct: 245 LAGWAGSAAAAETALVAAGVSPQARGEALTVEEFAAIAE 283 >gi|157123560|ref|XP_001660203.1| dimethyladenosine transferase [Aedes aegypti] gi|108874371|gb|EAT38596.1| dimethyladenosine transferase [Aedes aegypti] Length = 339 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 145/296 (48%), Gaps = 25/296 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ ++ YK+ K + QNFL+D + KI ++G++ V+E+G GPG +T+ + Sbjct: 19 PLPTIRDLVRLYKLRALKQLSQNFLMDERLTNKIVRAAGNIKDNYVLEVGPGPGGITRSI 78 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISS------ 117 + +++V+EKD++F P L+ ++ + L+ I++ D L+ E F Sbjct: 79 IRKFPHQLVVVEKDRRFLPTLELLAEASKDFLQMDIVRGDILEYRTEMAFPDCPKTEWND 138 Query: 118 ---PIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 P+ +I NLP+ I TRLL NW + + W SLTL FQKEV ERI A S Sbjct: 139 KRAPVHLIGNLPFAISTRLLINWIREMSLRSGAWSYGRSSLTLTFQKEVAERIVAPILSE 198 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQE 228 + RLSV+ +KA + F I F P P V V+ IP P+ + ++K+ + Sbjct: 199 YRCRLSVMNQVWSKAELKFIIPGKAFVPKPDVDVGVVTIIPLKTPLTTVHFDVVEKVIRH 258 Query: 229 AFGKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276 F R+K R+ + L ++ A ++ R+ LS E+ RI Sbjct: 259 IFSMRQKYCRRGVSNLYPPDVREDLTQLTFRMADVDPLARSFQLSTEECLRIAEAY 314 >gi|325680208|ref|ZP_08159773.1| dimethyladenosine transferase [Ruminococcus albus 8] gi|324108157|gb|EGC02408.1| dimethyladenosine transferase [Ruminococcus albus 8] Length = 286 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 18/288 (6%) Query: 3 MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+N S+ +K ++ + K +GQNFL++ ++ +IAE + G VIEIG G G Sbjct: 1 MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKKGFGVIEIGTGVGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118 LT L A KV+ IE D + P+L++ ++H N +++I D ++VD K Sbjct: 61 LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMEVDLHKLIEEEFDGL 118 Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + + ANLPY I + +L + S+T++ QKE G R+ A + G ++V Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRL---RIRSVTVMVQKEAGTRLCAPVGTRDMGAVTVA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRK 235 + + ++F++S F P+P V S V+ F I P E+ K+ + AF +RRK Sbjct: 176 VNYFSAPKILFNVSRGSFMPAPNVDSCVVRFDIKEDTPAGVTDEAFFFKMVRAAFSQRRK 235 Query: 236 TLRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 TL S L + + +G+ +R E L +E + L Sbjct: 236 TLVNSVSSGMGLDKAAVTKAVENSGLPAAVRPEQLKMEQLVTFSEELK 283 >gi|148270487|ref|YP_001244947.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1] gi|166221712|sp|A5IME8|RSMA_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147736031|gb|ABQ47371.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1] Length = 260 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 18/261 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + KK++GQ FL D I K+I + G V+EIGAG G LT+ L GAR V Sbjct: 7 LKKYGVKLKKHLGQVFLSDDRIAKRIVKEVGLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I E D+ P+L++ S++PN +E+ +D LK +I ++N+PY+I + Sbjct: 66 IAYEIDESLAPVLRERLSKYPN-VELRFEDFLK-----AKDIPEGAICVSNIPYSITGPI 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + I ++ ++ QKEVGERI A+ YG LSV+ + +FD+S Sbjct: 120 MEKIIEWK-----FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P+P+V STV+ + E +K F K+RKTL+ +L+ + Sbjct: 175 CFVPNPEVDSTVVDL--RRKSVDLDFEKFRKFVSMIFAKKRKTLKNNLRPFLS--VFE-- 228 Query: 254 GIETNLRAENLSIEDFCRITN 274 G++ + RAE L++E+ Sbjct: 229 GVDLSRRAEQLTVEEIVEFYE 249 >gi|226192683|pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 gi|226192684|pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 94/277 (33%), Positives = 139/277 (50%), Gaps = 19/277 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ +L + + K GQNFL+ L++I E++ G V E+G G G LT+ L Sbjct: 6 SPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRAL 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L GA +V IEKD + P+L++ S P + ++ DAL +E+ S ++ANL Sbjct: 65 LEAGA-EVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYPWEEVPQGS---LLVANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+I T L+ + + L L QKEV ER TA+ +P YG L++ A Sbjct: 119 PYHIATPLVTRLLKTGR----FARLVFLVQKEVAERXTARPKTPAYGVLTLRVAHHAVAE 174 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 +FD+ P FFP PKV S+++ P L ++ + AFGKRRKTL +L G Sbjct: 175 RLFDLPPGAFFPPPKVWSSLVRLTPTGA---LDDPGLFRLVEAAFGKRRKTLLNALAAAG 231 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E L G+ +RAE L +E F R+ L Sbjct: 232 YPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 >gi|302844675|ref|XP_002953877.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f. nagariensis] gi|300260689|gb|EFJ44906.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f. nagariensis] Length = 384 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 12/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +++ I + +G V+EIG G GNLT LL A+KVI IE Sbjct: 32 GLEFHKSKGQHILKNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAIE 90 Query: 78 KDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L+ + N L+II D ++V+ F +AN+PYNI + L F Sbjct: 91 LDPRMVLELQRRVQGTAYANNLQIIHGDFMRVELPYF------DLCVANIPYNISSPLTF 144 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ P + + +++Q E R+ A+ Y RL+V T + + + + + F Sbjct: 145 KLLAHR---PAFRAAVIMYQHEFAMRLVAKPGDQLYSRLAVNTQLLARVSHLLKVGKNNF 201 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ P P P + + F ++ KTL ++ L Sbjct: 202 RPPPKVDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTLGAIFRQTNALQALEA 258 >gi|311747369|ref|ZP_07721154.1| dimethyladenosine transferase [Algoriphagus sp. PR1] gi|126579087|gb|EAZ83251.1| dimethyladenosine transferase [Algoriphagus sp. PR1] Length = 261 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 11/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 K+ KK++GQ+FL DL+I ++IA + G V+EIG G G LT LL ++ +I Sbjct: 3 KVRAKKHLGQHFLTDLSIAERIALAVKGHGGVKKVLEIGPGMGVLTDYLLK-NPLELYLI 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + D++ L +R II+ D LK + +IS P I N PYNI +++ F Sbjct: 62 DIDKESIAYLNKKYPSLKDR--IIEGDYLKYNLSN--DISEPYAIAGNFPYNISSQIFFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + QKEV +RI + K + YG LSVL +F + P VF Sbjct: 118 VLEERDK---VTEVVCMLQKEVAKRIASPKGNKDYGILSVLLQAFYDIEYLFSVPPEVFD 174 Query: 197 PSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + + + C + ++ + FG RRKTLR SLK L + + Sbjct: 175 PPPKVNSGVIRLVRNEVKSLDCNEKLFFQVVKGGFGNRRKTLRNSLKSFQLPEQLKEHPL 234 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + RAE L + DF I + Sbjct: 235 -MDKRAEQLDVADFVFIAQQIE 255 >gi|15806536|ref|NP_295249.1| dimethyladenosine transferase [Deinococcus radiodurans R1] gi|6459288|gb|AAF11091.1|AE001996_6 dimethyladenosine transferase [Deinococcus radiodurans R1] Length = 336 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 140/276 (50%), Gaps = 16/276 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+ G V+EIG G G LT+ + Sbjct: 68 SPARVRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREV 127 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + GAR V +EKD++ P+L + + + +I DAL D+ + R+IANL Sbjct: 128 ASRGAR-VTALEKDERLRPVLAETLAGLD--VNVIWGDALDFDYAAL---PAGTRVIANL 181 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I LL ++ A P S T+L QKEV +R+ AQ +YG LS + Sbjct: 182 PYYITGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVK 237 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + D+ FFP+P VTS+V+ P + A RRKTLR +L+ +G Sbjct: 238 HVRDVPKGAFFPAPDVTSSVVRLDFDRTR-PQPDPAFVSFVDNALRYRRKTLRNNLRMMG 296 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L G+ ++RAE++ + + L Sbjct: 297 HSGEAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 332 >gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus kandleri AV19] gi|27151577|sp|Q8TWU7|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus kandleri AV19] Length = 278 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 24/281 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L + S Y I P++ +GQ+F++D NIL+ + E++ + V+EIG GPG LT+ L+T Sbjct: 7 LAYLRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTR- 65 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A +VI +E D + ILK + PN LEI++ D L+ D N +++AN+PYNI Sbjct: 66 AGQVIAVELDGRMVEILKRELGEAPN-LEIVRADFLEYDVPDDVN-----KVVANIPYNI 119 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + D + L +Q+E ER+ A+ S Y RL+V+ ++ Sbjct: 120 SSPITFKLLELD-----IDVAVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRG 174 Query: 190 ISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSL------ 241 + F P P+V S+V+ P ++L+ + + F + KT+R +L Sbjct: 175 VPRRAFIPPPRVGSSVVRLTPKSEEERPDVDPDTLESVCRALFQHKNKTVRNALLLSAHE 234 Query: 242 ---KRLGGENLLHQAGIE-TNLRAENLSIEDFCRITNILTD 278 R +L + + + R +L E + + Sbjct: 235 WATDREQAREVLEELPEDLLSERPLHLPPERVAELAAAIES 275 >gi|257438823|ref|ZP_05614578.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165] gi|257198732|gb|EEU97016.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165] Length = 320 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 16/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ + Y K GQNF+++ + KI ++SG V+EIG G G Sbjct: 37 MPELTDLSYVRALCEKYDFALSKGFGQNFIVNPGLPPKIVDASGVDKRYGVLEIGPGIGV 96 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LT+ L A KV+ IE D++ P+L + + N +++ D LKVD + Sbjct: 97 LTRELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAQEFPGM 154 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + ++ + ESLT++ QKE +R+ A + +S Sbjct: 155 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAAPGTRASSAISCA 211 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + + MMF +P F+P+PKVTS V+ P E + + AFG+RRK Sbjct: 212 VSYYATSKMMFTAAPGSFYPAPKVTSAVVRMEIRPTPAVQVEDEEGYFALVRAAFGQRRK 271 Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 T ++ + + AG + +R E L++EDF +I + L Sbjct: 272 TAANAIASGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQSALA 319 >gi|297824837|ref|XP_002880301.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp. lyrata] gi|297326140|gb|EFH56560.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp. lyrata] Length = 352 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 14/256 (5%) Query: 1 MTMNNKSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M S + +HY I K GQ+ L + ++ I + +G ++EIG G Sbjct: 6 MRKEKPKASNRAPSNHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGT 65 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNIS 116 GNLT+ LL G ++VI +E D + L+ P NRL++IQ D LK + +F Sbjct: 66 GNLTKKLLEAG-KEVIAVELDSRMVLELQRRFQGTPYSNRLKVIQGDVLKTELPRF---- 120 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +AN+PY I + L F + P + +++Q+E R+ AQ Y RLSV Sbjct: 121 --DICVANIPYQISSPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSV 175 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 T + + + + + F P PKV S+V+ P + + F ++ KT Sbjct: 176 NTQLYARVSHLLKVGKNNFRPPPKVDSSVVRIEPRRPGPQVNKKEWDGFLRVCFIRKNKT 235 Query: 237 LRQSLKRLGGENLLHQ 252 L K+ ++L + Sbjct: 236 LGSIFKQKSVLSMLEK 251 >gi|269958833|ref|YP_003328621.1| dimethyladenosine transferase [Anaplasma centrale str. Israel] gi|269848663|gb|ACZ49307.1| dimethyladenosine transferase [Anaplasma centrale str. Israel] Length = 270 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 98/267 (36%), Positives = 151/267 (56%), Gaps = 9/267 (3%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 K K +GQNF+LD I ++I +GS++G +IE+G G G +T+++L ++ I Sbjct: 4 LKHKAYKSLGQNFILDPAIAEEIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAI 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 EKD + P + + QHP+ I+ D L ++ E+ I++P ++IANLPYNI LL Sbjct: 64 EKDCRLSPTHESLMKQHPH-YRYIEHDVLDINLEEL--IAAPSKMIANLPYNISVILLLR 120 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + +E LTL+FQKEV ER+ A+ + Y LSVL + D+ PHVF Sbjct: 121 MLK---YIHNFERLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPHVFS 177 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253 P PKV S+V++ P N P + K+ ++AFG +RKT+R +L + LL + Sbjct: 178 PPPKVCSSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALLAEC 237 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280 I ++RAENLS+E C ++N L Q Sbjct: 238 KIPPSVRAENLSVEQLCAVSNFLQSRQ 264 >gi|282891871|ref|ZP_06300350.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498131|gb|EFB40471.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 282 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + L L+ I PKK + QNFL+D NI++KIA ++ + ++EIG GPG+LT+ L Sbjct: 5 KPNELFAFLNSLGIRPKKGLSQNFLIDGNIIRKIAATAAASSDDVILEIGPGPGSLTECL 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRI 121 L GA +VI +EKD Q L + + L++ +D LK E F ++ Sbjct: 65 LETGA-QVIAVEKDNQLAEALIRLQTP-AQTLQVHCEDILKFPIESVFKQELKAGKKAKV 122 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 IANLPY++ + +L ++ ++T++ Q+EV R TA S + ++ + Sbjct: 123 IANLPYHLTSSILAEL---APLHAYFSTITVMVQEEVARRFTAMPGSREFSAFTLFLNFF 179 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + F + F+P+PKV S V+ +P + +T++AF +RRK ++ +L Sbjct: 180 SNPVYNFKVGKQCFYPAPKVDSAVMTLH-LKSPPQVDQQGFFTLTRKAFEQRRKMIKSAL 238 Query: 242 KRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 K + L GI +RAE+LS++D+ ++ IL + Sbjct: 239 KSIYEPEKVMQALEGIGINPLVRAEDLSLDDYLKLFAILKKTE 281 >gi|300790057|ref|YP_003770348.1| dimethyladenosine transferase [Amycolatopsis mediterranei U32] gi|299799571|gb|ADJ49946.1| dimethyladenosine transferase involved in rRNA methylation [Amycolatopsis mediterranei U32] Length = 278 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 129/282 (45%), Gaps = 16/282 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ + + + P K +GQNF+ D N +++I E + G V+E+G G G+ Sbjct: 1 MVELLGPAEIRGLAAELDVRPTKKLGQNFVHDPNTVRRIVELANVAPGDVVLEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNIS 116 LT LL GA V+ +E D + L ++ L+++ DA++V + Sbjct: 61 LTLGLLATGAH-VVAVEIDPKLAERLPKTVAERGPEVAGNLDVVGADAMRVTRGEL---G 116 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P ++ANLPYN+ ++ + ++ P ++ Q EV +R+ A S YG SV Sbjct: 117 EPTALVANLPYNVAVPVVLHLLAE---VPSLRKGLVMVQTEVADRMAAGPGSRIYGVPSV 173 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 W A + + VF+P P V S ++ F E L + AF +RRKT Sbjct: 174 KLAWYGSARKVAAVPRSVFWPVPNVDSALVAFERGDTTASEDRELLFGLVDAAFSQRRKT 233 Query: 237 LRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 LR +L G LL AGI+ R E L + DF RI Sbjct: 234 LRAALAGWAGSAERAGELLTAAGIDPRTRGEQLDVHDFARIA 275 >gi|260434330|ref|ZP_05788300.1| dimethyladenosine transferase [Synechococcus sp. WH 8109] gi|260412204|gb|EEX05500.1| dimethyladenosine transferase [Synechococcus sp. WH 8109] Length = 274 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 11/268 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D ++L++I E++ V+E+G G G LT+ LL G + V IE Sbjct: 5 GHHARKRFGQHWLRDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L++ P + Q D L+ E + +++AN+PYNI LL Sbjct: 65 LDRDLVDGLQERFEAQPG-FSLHQGDVLEAPME-LSDGRIADKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P P ++ L LL QKEV ERI A+ + LSV + + + P F Sbjct: 123 VGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCRSVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S VI P P ++ + ++AF RRK LR +L + + L + Sbjct: 183 QPPPKVQSEVICLEPLPASERVEPALAARVESLLKQAFLARRKMLRNTLAGVAEPDRLKE 242 Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276 AG R + L+ + + L Sbjct: 243 LAASAGFSLQQRPQELAPATWVALARGL 270 >gi|291529852|emb|CBK95437.1| dimethyladenosine transferase [Eubacterium siraeum 70/3] Length = 287 Score = 238 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 17/289 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + +++ + + K +GQNFL++ + KIAE G+ + IEIG G G Sbjct: 1 MKLTD-ISTIRQLFEKHGFSFTKSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGV 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L KV+ IE D PIL + ++ N +E+I D ++ D K P Sbjct: 60 LTRELAERC-EKVVAIEIDTGLKPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDM 117 Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + ANLPY I + ++ + +++T++ Q E +RI A S G ++ Sbjct: 118 DVIVCANLPYYITSPVIMKLLEEKLP---IKAITVMVQLEAADRICAAVGSRECGAITAS 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + K +F ++ F P+P V S VI + P ++ ++AF +RRK Sbjct: 175 INYYAKPKKLFRVNRGSFMPAPNVDSAVISLERYEQPPYKVDNEPLFFEVIKQAFAQRRK 234 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + + + GI RAE L++ + ++ I+ + Sbjct: 235 QLANPVSAYFKIPKAVLAEKMTEGGIPATARAEQLTMSELVKLYEIINE 283 >gi|213613183|ref|ZP_03371009.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 226 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 16/239 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV+ + Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLR 238 + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIR 226 >gi|284008564|emb|CBA75122.1| dimethyladenosine transferase [Arsenophonus nasoniae] Length = 241 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 8/242 (3%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 + + ++EIG G G LT + + V+E D+ L +L Sbjct: 1 MVTAFNPKPDQAIVEIGPGLGALTLPVSEH-IENMTVVELDRDLAARLA-AHPALSAKLT 58 Query: 99 IIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157 IIQ+DA+ +DF P+R NLPYNI T L+F+ T+ + + QKE Sbjct: 59 IIQNDAMTIDFGAIAKEKGQPLRAFGNLPYNISTPLMFHLF---TYTNAIADMNFMLQKE 115 Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIP 216 V R+ A N+ YGRLSV+ + + + + P F P+PKV S V+ IPH NP P Sbjct: 116 VVNRLVAGPNTKAYGRLSVMAQYYCQIIPILAVPPSAFTPAPKVDSAVVRLIPHQRNPYP 175 Query: 217 -CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 C ++ L +IT +AF +RRKT+R SL L Q GI+ N RAEN+S+E++C++ Sbjct: 176 ICDVKLLSRITTQAFNQRRKTIRNSLSDLFSVQDFEQLGIDPNCRAENISVENYCKLACR 235 Query: 276 LT 277 L Sbjct: 236 LA 237 >gi|195128817|ref|XP_002008857.1| GI13722 [Drosophila mojavensis] gi|193920466|gb|EDW19333.1| GI13722 [Drosophila mojavensis] Length = 413 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 19/293 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 S++ ++ YK+ K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 101 PLPSIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHNDIVLEVGPGPGGITRS 160 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120 +L ++++++EKD +F +L++ + +EI +D L+ + E+ + + + Sbjct: 161 ILRRQPQRLLLVEKDARFTETLQLLRECARPLDMEVEIYHEDILRFNIEQHVPDTTQRLH 220 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP+ I TRLL NW + +TL FQKEV ERI AQ S RLS Sbjct: 221 LIGNLPFAISTRLLINWFDDLSRRRGAFRRNDTCMTLTFQKEVAERICAQVGSEQRCRLS 280 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ + F I F P P+V V+ IP P ++++ + F R+ Sbjct: 281 VMSQIWTEPVLKFIIPGKAFVPKPQVDVGVVKVIPLKRPKTELPFPLVERVVRHIFSMRQ 340 Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R+ L L +A ++ +R LS+ + R+ + D+ Sbjct: 341 KYCRRGYSTLLPPEGREETTQALFQRADVKDTMRPFELSVAECLRLADAYADH 393 >gi|308505052|ref|XP_003114709.1| hypothetical protein CRE_28029 [Caenorhabditis remanei] gi|308258891|gb|EFP02844.1| hypothetical protein CRE_28029 [Caenorhabditis remanei] Length = 363 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 145/303 (47%), Gaps = 28/303 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG GPG +T+ + Sbjct: 7 PLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVHENDWVIEIGPGPGGITRAI 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 L GA ++ V+E D +F P L+ ++ +R+ I DAL+ + + Sbjct: 67 LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKAETQRPKSVDW 126 Query: 117 -----SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQK 166 P+ +I NLP+NI + L+ ++ W LTL FQ EV +R+ + Sbjct: 127 NDSSLPPMHVIGNLPFNIASPLIIKYLRDMSYQRGVWQYGRVPLTLTFQLEVAKRLCSPI 186 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225 R+S++ + T+ M+F IS F P P+V V+ F+P P+ E L+K+ Sbjct: 187 ACDTRSRISIMAQYVTEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 246 Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ F R+K + + LK L + LL + ++ + L +E F + Sbjct: 247 CRQVFHYRQKYVEKGLKTLYPPEMEDEMADELLKKCRVDPTTTSIRLGMEQFADLAEGYN 306 Query: 278 DNQ 280 + Sbjct: 307 EQC 309 >gi|301761816|ref|XP_002916330.1| PREDICTED: probable dimethyladenosine transferase-like [Ailuropoda melanoleuca] Length = 313 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 19/275 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + + S ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A Sbjct: 20 RELKSAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KA 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI E D + L P ++L+++ D LK D F +ANLPY Sbjct: 79 KKVIACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKTDLPFF------DACVANLPYQ 132 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + Sbjct: 133 ISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + + F P PKV S+V+ P P P + + + F ++ KTL + K + Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQ 249 Query: 249 LLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278 LL + + + E+ SI D +I ILT Sbjct: 250 LLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|298345589|ref|YP_003718276.1| putative dimethyladenosine transferase [Mobiluncus curtisii ATCC 43063] gi|298235650|gb|ADI66782.1| possible dimethyladenosine transferase [Mobiluncus curtisii ATCC 43063] Length = 309 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 144/297 (48%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119 LG KVI IE DQ+ L +QH L ++ DAL++ D E ++P Sbjct: 66 ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWAAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL------------------NPIPCCLES 221 W +A F + +VF+P P V STV+ F I + Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKPSAEGLTDEAIETLRQE 241 Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 + AF +RRKTLRQSL G NLL AGI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298 >gi|218441380|ref|YP_002379709.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424] gi|218174108|gb|ACK72841.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424] Length = 273 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 13/266 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L +I E++ ++EIG G G LT+ LL V+ +E D Sbjct: 4 RPRKRFAQHWLRSEQALDQIIEAAQLQQSDHILEIGPGTGILTRRLLPE-VNSVVAVEID 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLLF 135 + L + N L ++Q D L +D E F + P +++AN+PYNI +L Sbjct: 63 RDLCQKLGKSLGKLDNFL-LLQGDILSLDLESHLVNFPKFNHPHKVVANIPYNITGLILE 121 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + P +E + LL QKEV ER+TA+ + YG LS+ + + + ++ Sbjct: 122 YLLGTIAEPTQKNYELIVLLIQKEVAERLTAKPGTKAYGALSIRVQYLAQCEWICEVPAR 181 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 F+P PKV S V+ P L P + L + + F RRK L +L + + Sbjct: 182 AFYPPPKVDSAVVRLRPQLVSNPANNPKQLDTLIKLGFANRRKMLYNNLTSVIDRDQLTQ 241 Query: 249 LLHQAGIETNLRAENLSIEDFCRITN 274 LL + I RAE+LS+E + +N Sbjct: 242 LLEKLHINPQCRAEDLSLEQWIEFSN 267 >gi|21672424|ref|NP_660491.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090650|sp|Q8KA00|RSMA_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21623034|gb|AAM67702.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 274 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 143/265 (53%), Gaps = 9/265 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P K QNFL++ N++KKI + T++EIG G G LT+ + + ++IVIE Sbjct: 7 KHLPLKRFSQNFLINQNLIKKIVKFINPQLKQTLVEIGPGLGALTKPICNI-VDELIVIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136 D LK S ++L + DAL D+ F + IRI NLPY+I T LLF Sbjct: 66 IDLNLLNFLKKYS--FYSKLIVFCQDALIFDYLNLFYKKNKLIRIFGNLPYHISTSLLFC 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + + + QKEV ER+ A + YGRLS++ + ++F+++ F Sbjct: 124 FFEKNK---IIQDMNFMLQKEVAERLIAFPGTKSYGRLSIIAQYYCNIKIIFNVASENFR 180 Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PK+ ST ++ +PH ++ L IT AF KRRK LR SL ++ E + + Sbjct: 181 PIPKIDSTFVNLVPHKKSPYFTHDIKVLSYITNLAFQKRRKILRHSLGKIFSEKIFLKLN 240 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 ++ LRAENLSI +C+++N + +N Sbjct: 241 VDPKLRAENLSILQYCQLSNYIIEN 265 >gi|148233697|ref|NP_001089685.1| DIM1 dimethyladenosine transferase 1-like [Xenopus laevis] gi|77748206|gb|AAI06333.1| MGC130862 protein [Xenopus laevis] Length = 306 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 122/267 (45%), Gaps = 15/267 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + ++ +GQ+ L + I+ I + + V+E+G G GN+T LL +++V Sbjct: 16 VKSQGVLFNTGLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KSKRV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I E D + L+ ++L+++ D LK D FF++ +ANLPY I + Sbjct: 75 IACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL S K + LL Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAASFKSTAVQELLE 245 Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277 + I +L N+S+ + I + Sbjct: 246 KNYRIHCSL--HNISVPENFSIAEKIE 270 >gi|148989985|ref|ZP_01821260.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73] gi|147924645|gb|EDK75731.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73] Length = 252 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 20/252 (7%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 +++ D + VIEIG G G LT+ L A +V+ E D + PIL D N + ++ Sbjct: 2 DTAEIDDQVNVIEIGPGIGALTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVV 59 Query: 101 QDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 +D LKVD + F N + PI+++ANLPY I T +L + I + + ++ QK Sbjct: 60 NEDILKVDLAQHIQNFKNPNLPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQK 116 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EV +RI+AQ N+ YG LS+ + A + F + VF P+P V S ++ + P Sbjct: 117 EVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAV 176 Query: 217 CCLES--LKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLS 265 + K+++ +F RRKTL +L G+ L QAG+ ++R E LS Sbjct: 177 AVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALS 236 Query: 266 IEDFCRITNILT 277 + +F + + L Sbjct: 237 LAEFAGLADALK 248 >gi|25141369|ref|NP_491242.2| hypothetical protein T03F1.7 [Caenorhabditis elegans] gi|74961647|sp|P91424|TFB1M_CAEEL RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|20451250|gb|AAB42235.2| Hypothetical protein T03F1.7 [Caenorhabditis elegans] Length = 367 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 146/303 (48%), Gaps = 28/303 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +L+ + Y++ KK + QN+L+D+NI +KIA+ + ++ VIEIG GPG +T+ + Sbjct: 9 PLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGITRAI 68 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 L GA ++ V+E D +F P L+ ++ +R+ I DAL+ + + Sbjct: 69 LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKNETARPESVDW 128 Query: 117 -----SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQK 166 + +I NLP+NI + L+ ++ W LTL FQ EV +R+ + Sbjct: 129 HDSNLPAMHVIGNLPFNIASPLIIKYLRDMSYRRGVWQYGRVPLTLTFQLEVAKRLCSPI 188 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225 R+S+++ + + M+F IS F P P+V V+ F+P P+ E L+K+ Sbjct: 189 ACDTRSRISIMSQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVLEKV 248 Query: 226 TQEAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ F R+K + + LK L E +LL + I+ + L IE F + Sbjct: 249 CRQVFHYRQKYVTKGLKTLYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQFADLAEGYN 308 Query: 278 DNQ 280 + Sbjct: 309 EQC 311 >gi|297568597|ref|YP_003689941.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2] gi|296924512|gb|ADH85322.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2] Length = 287 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 136/286 (47%), Gaps = 17/286 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +K +L+ + P K +GQNFL+ + ++I + G TV+E+G G G LT+ L Sbjct: 2 NQSEIKKLLTERGLAPSKQLGQNFLIQPVLAERIVTAGGITPDDTVVELGVGLGALTRPL 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIAN 124 AR VI +E D ++ P +E+ D L+ DF + + ++I+AN Sbjct: 62 AATAAR-VIGLEIDAGIIKYHREH-QGLPANVELRHQDLLRADFAALAAEVGTRLKIMAN 119 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY + LLF + L+ QKEV +R+TA+ S YG L+VL G Sbjct: 120 LPYAVTNPLLFKLVEQRRA---IRQAVLMIQKEVAQRLTARPGSKEYGVLTVLLGTCATV 176 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSL 241 + ++ P F+P PKV S VI H P L+++ AF +RRKTL SL Sbjct: 177 QRLLEVGPGNFYPRPKVDSVVIAINFHEQPAALTEVDFALLRRVVDSAFRQRRKTLLNSL 236 Query: 242 K--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R L AGI+ RAENL EDF R+T +++ Sbjct: 237 SAGAGLGLDRNQTAAALAAAGIDPRFRAENLDTEDFLRLTKAVSEQ 282 >gi|328948142|ref|YP_004365479.1| ribosomal RNA small subunit methyltransferase A [Treponema succinifaciens DSM 2489] gi|328448466|gb|AEB14182.1| Ribosomal RNA small subunit methyltransferase A [Treponema succinifaciens DSM 2489] Length = 291 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 12/281 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N LK L + +K GQNF+++ + +KI V EIG G G +T++ Sbjct: 7 NSPSELKAFLEQSGMAMQKKFGQNFMINQSAREKIFSLLELKKDELVWEIGPGLGCMTEL 66 Query: 65 LLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121 +L+ GA + V E D+ F ILK + + +II+ D LK + F+ N P ++ Sbjct: 67 ILSSGAN-LEVFEIDRGFISILKQFFEQQEKSEQFKIIEGDVLKNWKKAFYENPQKPAKL 125 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI + + I+ + ++ QKEV +R+ A+K + +Y SVL W Sbjct: 126 FGNLPYNIAATFIADTITENV---VFKKCVFTVQKEVAQRMAAKKGTENYSAFSVLCQWG 182 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F+P P V+S + NP K+ F RRKT++ ++ Sbjct: 183 YNVKLDLVLGSSSFWPRPTVSSQAVVMTKKENPFSGNSALFVKVVHALFAARRKTIQNNI 242 Query: 242 KRLGGENL-----LHQAGIETNLRAENLSIEDFCRITNILT 277 K L EN+ + GI RAENL++EDF +I+++L+ Sbjct: 243 KPLLPENISAEEFFEKCGISKTERAENLAVEDFIKISDMLS 283 >gi|116063351|gb|AAI23078.1| LOC779588 protein [Xenopus (Silurana) tropicalis] Length = 304 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 15/267 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A++V Sbjct: 14 VKSQGVLFNTGLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRV 72 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D + L+ ++L+++ D LK D FF++ +ANLPY I + Sbjct: 73 VACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 126 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 127 PFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVG 183 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL + K + LL Sbjct: 184 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLE 243 Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277 + I +L N+S+ + I + Sbjct: 244 KNYKIHCSL--HNISVPENFSIAEKIE 268 >gi|197246216|gb|AAI69134.1| hypothetical protein LOC779588 [Xenopus (Silurana) tropicalis] Length = 306 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 15/267 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A++V Sbjct: 16 VKSQGVLFNTGLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D + L+ ++L+++ D LK D FF++ +ANLPY I + Sbjct: 75 VACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL + K + LL Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLE 245 Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277 + I +L N+S+ + I + Sbjct: 246 KNYKIHCSL--HNISVPENFSIAEKIE 270 >gi|91091694|ref|XP_972612.1| PREDICTED: similar to dimethyladenosine transferase [Tribolium castaneum] gi|270001061|gb|EEZ97508.1| hypothetical protein TcasGA2_TC011352 [Tribolium castaneum] Length = 306 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + ++ I K GQ+ L + ++ + + + TV+EIG G GNLT L Sbjct: 8 KKSRIHAAVAKQGITFNKSFGQHILKNPLVITSMLDKAALKPSDTVLEIGPGTGNLTLKL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L ++V+ E D + L+ P ++L+I+ D LK + F +A Sbjct: 68 LES-VKQVVACEIDHRLVAELQKRVQNSPFKSKLQILIGDVLKTELPFFS------VCVA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + PF+ L+FQKE +R+ A Y RLS+ T + Sbjct: 121 NIPYQISSPLVFKLL---LHRPFFRCAVLMFQKEFADRLVAVPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S V+ P P P +T+ AF ++ KTL + ++ Sbjct: 178 VDMLMKVGKNNFRPPPKVESAVVRIEPRNPPPPISYTEWDGLTRIAFSRKNKTLGAAFRQ 237 Query: 244 LGGENLLHQ 252 L + Sbjct: 238 SVVLATLEK 246 >gi|282896422|ref|ZP_06304443.1| 16S rRNA dimethylase [Raphidiopsis brookii D9] gi|281198710|gb|EFA73590.1| 16S rRNA dimethylase [Raphidiopsis brookii D9] Length = 281 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P+K Q++L L I +++ ++EIG G G LT+ LL L ++ +E Sbjct: 2 VRPQKQFAQHWLRSEKALNSIVKAAECQANDRILEIGPGTGILTKRLLPL-VDSLLAVEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134 D+ +L N L ++Q D L + +++AN+PYNI ++ Sbjct: 61 DRDLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPII 119 Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + AD P ++S+ LL QKEV +R+ A+ S ++G LSV + + + + Sbjct: 120 EKLLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPA 179 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 F+P PKV S V+ +P I + L+ + + FG +RK LR +L+ + Sbjct: 180 SAFYPPPKVDSVVVRLLPRNMEIGANDPKLLENMLKLGFGCKRKMLRNNLQSVIDRESLT 239 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL I ++RAE +S+ + + N L Sbjct: 240 KLLEGLNINPHVRAEEISVSQWVSLVNSL 268 >gi|291556434|emb|CBL33551.1| dimethyladenosine transferase [Eubacterium siraeum V10Sc8a] Length = 287 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 17/289 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + +++ + + K +GQNFL++ + KIAE G+ + IEIG G G Sbjct: 1 MKLTD-ISTIRQLFEKHGFSFTKSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGV 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L KV+ IE D PIL + ++ N +E+I D ++ D K P Sbjct: 60 LTRELAKRC-EKVVAIEIDTGLKPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDM 117 Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + ANLPY I + ++ + +++T++ Q E +RI A S G ++ Sbjct: 118 DVIVCANLPYYITSPVIMKLLEEKLP---IKAITVMVQLEAADRICAAVGSRECGAITAS 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + K +F ++ F P+P V S VI + P ++ ++AF +RRK Sbjct: 175 INYYAKPKKLFRVNRGSFMPAPNVDSAVISLERYEQPPYKVDNEPLFFEVIKQAFAQRRK 234 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + + + GI RAE L++ + ++ I+ + Sbjct: 235 QLANPVSAYFKIPKAVLAEKMTEGGIPATARAEQLTMAELVKLYEIIDE 283 >gi|224128336|ref|XP_002320304.1| predicted protein [Populus trichocarpa] gi|222861077|gb|EEE98619.1| predicted protein [Populus trichocarpa] Length = 353 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 14/242 (5%) Query: 15 SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +HY I K GQ+ L + ++ I + SG V+EIG G GNLT+ LL G + Sbjct: 20 NHYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVVLEIGPGTGNLTKKLLEAG-KM 78 Query: 73 VIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V+ IE D + L+ NRL++IQ D LK D F +AN+PY I Sbjct: 79 VVAIELDPRMVLELQRRFQGTAFSNRLKVIQGDVLKTDLPYF------DICVANIPYQIS 132 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F ++ P + ++FQ+E R+ AQ Y RLSV T + + + + Sbjct: 133 SPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLYARVSHLLKV 189 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 + F P PKV S+V+ P + + F ++ KTL + ++L Sbjct: 190 GKNNFRPPPKVDSSVVRIEPRKPRPQVNPKEWDGFIRICFIRKNKTLGSIFRIKNVLSML 249 Query: 251 HQ 252 + Sbjct: 250 EK 251 >gi|167041696|gb|ABZ06440.1| putative ribosomal RNA adenine dimethylase [uncultured marine microorganism HF4000_010I05] Length = 312 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 15/274 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I P+K +GQ+FL D +L +I ++ V+EIG G G LT+ L+ GA +V+ IE Sbjct: 35 RIRPRKSLGQHFLADGRVLTRIVNAAEIASQELVLEIGPGQGALTRRLVDRGA-QVVAIE 93 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L D PN L +++ DA KVD + + +++ NLPY ++ + Sbjct: 94 LDHHLASTLPDRLGNPPN-LTVVEADARKVDLKSLLGSGAVYKVLGNLPYYAANPIIRRF 152 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + A P + + + Q+EV + A G LSV + + ++ + P F P Sbjct: 153 LEAPNQP---QLMVVTLQQEVARSMAAAPGKM--GFLSVAVQYYAETKVVCTVPPRAFRP 207 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL------KRLGGENL 249 PKVTS V+ P +E+ + + F RK LR SL + +L Sbjct: 208 PPKVTSAVVRLDIRPVPPVDVAEVEAFFALVRAGFASPRKQLRNSLAHGLGVSTVAIAHL 267 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L ++ + R LS+ ++ I + + + Sbjct: 268 LDSLNLDGSRRPATLSMVEWAVIHSAWERREKVG 301 >gi|294629824|ref|ZP_06708384.1| dimethyladenosine transferase [Streptomyces sp. e14] gi|292833157|gb|EFF91506.1| dimethyladenosine transferase [Streptomyces sp. e14] Length = 296 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++G V+E+G G G+LT LL Sbjct: 3 PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVGPGLGSLTLALL 62 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V+ +E D L + +R ++ DA+ V +P ++ Sbjct: 63 E-AAERVVAVEIDDVLAGALPATVAARMPERADRFALVHSDAMHV---AELPGPAPTALV 118 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 119 ANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAAAPGSKVYGVPSVKANWYA 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 176 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTSATKREVFAVVDAAFAQRRKTLRAA 235 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 236 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 274 >gi|27151614|sp|Q9RU68|RSMA_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 292 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 140/276 (50%), Gaps = 16/276 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+ G V+EIG G G LT+ + Sbjct: 24 SPARVRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREV 83 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + GAR V +EKD++ P+L + + + +I DAL D+ + R+IANL Sbjct: 84 ASRGAR-VTALEKDERLRPVLAETLAGLD--VNVIWGDALDFDYAAL---PAGTRVIANL 137 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I LL ++ A P S T+L QKEV +R+ AQ +YG LS + Sbjct: 138 PYYITGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVK 193 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + D+ FFP+P VTS+V+ P + A RRKTLR +L+ +G Sbjct: 194 HVRDVPKGAFFPAPDVTSSVVRLDFDRTR-PQPDPAFVSFVDNALRYRRKTLRNNLRMMG 252 Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L G+ ++RAE++ + + L Sbjct: 253 HSGEAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 288 >gi|291395424|ref|XP_002714103.1| PREDICTED: dimethyladenosine transferase [Oryctolagus cuniculus] Length = 308 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 19/280 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + + + S ++ K +GQ+ L + ++ I E + V+E+G G GN+T L Sbjct: 10 RREERRELKSAGGLVFNKGIGQHILKNPLVVNSIIEKAALRPTDVVLEVGPGTGNMTVKL 69 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L P ++L+++ D LK + F +A Sbjct: 70 LE-KAKKVIACELDPRLVAELHKRVQGTPLASKLQVMVGDVLKTELPFF------DTCVA 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T + Sbjct: 123 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLAR 179 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + F P PKV S+V+ P P P + + + F ++ KTL + K Sbjct: 180 VDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKS 239 Query: 244 LGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278 + LL + + + E+ SI D +I ILT Sbjct: 240 SAVQQLLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 277 >gi|198466094|ref|XP_001353894.2| GA20255 [Drosophila pseudoobscura pseudoobscura] gi|224471856|sp|Q2LZ79|TFB1M_DROPS RecName: Full=Dimethyladenosine transferase 1, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 1; AltName: Full=Mitochondrial transcription factor B1; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1; Flags: Precursor gi|198150443|gb|EAL29629.2| GA20255 [Drosophila pseudoobscura pseudoobscura] Length = 337 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 145/292 (49%), Gaps = 19/292 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ YK+ K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 17 PLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRS 76 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120 +L +++I++EKD++F +L++ +S +++I DD L+ + E+ + + I Sbjct: 77 ILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDTTQRIH 136 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP++I TRLL NW + + +TL FQKEV ERI A S RLS Sbjct: 137 LIGNLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLS 196 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ M F I F P P+V V+ IP P ++++ + F R+ Sbjct: 197 VMSQIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSLVERVVRHIFSMRQ 256 Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 K R+ L + L +A + LR+ LS+ R+ + + Sbjct: 257 KYCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308 >gi|288930049|ref|ZP_06423889.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str. F0108] gi|288328619|gb|EFC67210.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str. F0108] Length = 267 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 15/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL DL I ++IA++ + + ++E+G G G LTQ L T R + V+E Sbjct: 4 VRPKKHLGQHFLTDLGIAQRIADTVDACPELPILEVGPGMGVLTQYLATKN-RPLRVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L + ++ +D L++D F P + N PY+I +++ F + Sbjct: 63 DTESVAFLYNNFPLLAEN--VLGEDFLRMDLASVFT-GQPFVLTGNYPYDISSQIFFKML 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P T + Q+EV RI +Q + YG LSVL +F + VF P Sbjct: 120 DNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDETVFNPP 176 Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252 PKV S VI + + C K++ + F +RRK LR SL++L Q Sbjct: 177 PKVKSAVIRMARNKVENLGCNEILFKRVVKTVFNQRRKMLRVSLRQLFAGMPASPEFYAQ 236 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDI 282 R E LS+ +F ++TN++ + Sbjct: 237 EMF--TRRPEQLSVAEFVQLTNMVEQEMNA 264 >gi|167038742|ref|YP_001661727.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514] gi|300913673|ref|ZP_07130990.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561] gi|307723312|ref|YP_003903063.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513] gi|166852982|gb|ABY91391.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514] gi|300890358|gb|EFK85503.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561] gi|307580373|gb|ADN53772.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513] Length = 273 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 16/264 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQNF+ D NIL KI +SG V+EIG G G LT+ L +KV+ E D++ + Sbjct: 12 WGQNFIFDKNILAKIVIASGVALEDFVLEIGTGLGTLTEELAKR-VKKVVSFEIDRELYE 70 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141 K+ + + N + I+ +D +K D + N P +++ANLPY I + ++ + Sbjct: 71 ATKEKLNIY-NNVIIMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 F + +T+L QKEV ERI A + YG L+V ++ K ++F++ P VF P PKV Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKV 185 Query: 202 TSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254 S+++ P+ + + + AFG+RRK L +LK LG + ++ +A Sbjct: 186 DSSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 + R E LSIE+F + N++ D Sbjct: 246 LSHQRRGETLSIEEFTALANVIYD 269 >gi|195174159|ref|XP_002027848.1| GL16283 [Drosophila persimilis] gi|194115524|gb|EDW37567.1| GL16283 [Drosophila persimilis] Length = 337 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 146/292 (50%), Gaps = 19/292 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ YK+ K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 17 PLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRS 76 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120 +L +++I++EKD++F +L++ +S +++I DD L+ + E+ +++ I Sbjct: 77 ILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDMTQRIH 136 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP++I TRLL NW + + +TL FQKEV ERI A S RLS Sbjct: 137 LIGNLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLS 196 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ M F I F P P+V V+ IP P ++++ + F R+ Sbjct: 197 VMSQIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSLVERVVRHIFSMRQ 256 Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 K R+ L + L +A + LR+ LS+ R+ + + Sbjct: 257 KYCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308 >gi|87124270|ref|ZP_01080119.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9917] gi|86167842|gb|EAQ69100.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. RS9917] Length = 280 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 11/275 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D +L++I +++ G V+E+G G G LT+ LL V +E Sbjct: 5 GHTARKRFGQHWLRDDQVLERILQAADLQAGDRVLEVGPGRGALTERLLASPVASVHAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + P R + + D L V E +++AN+PYNI LL Sbjct: 65 LDRDLVVGLRQRFAAEP-RFSLQEGDVLAVALEG-PGGCRATKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P P ++SL LL QKEV ERI A+ + LSV + + + P F Sbjct: 123 VGRLDRPVDPPYQSLVLLVQKEVAERIRARPGQSSFSALSVRMQLLAYCSSVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 P PKV S V+ P ++++ + AF RRK LR +L L + L Sbjct: 183 QPPPKVQSEVVRLDPLPADQRLPVELARDVERLLRMAFLARRKMLRNTLAPLAAPDQLQA 242 Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 AGI+ R + ++ + + L A Sbjct: 243 LAGAAGIDLQQRPQEIAPAAWVALARGLNQADPAA 277 >gi|124005897|ref|ZP_01690735.1| dimethyladenosine transferase [Microscilla marina ATCC 23134] gi|123988580|gb|EAY28221.1| dimethyladenosine transferase [Microscilla marina ATCC 23134] Length = 258 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 11/260 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + PKK++GQ+FL DL+I ++I +G T++EIGAG G LT L+ + +IE Sbjct: 2 VKPKKHLGQHFLTDLSIAERIVNQVQQHNGYKTIVEIGAGTGVLTDFLVKSDNFQTHIIE 61 Query: 78 KDQQFFPILKDISSQHPNRL-EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L +P + I + D L +D F S I II N PYNI +++ F Sbjct: 62 IDTESVEYLHK---HYPTLVPYITEGDFLNIDLGALFKQQS-IGIIGNFPYNISSQIFFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + + QKEV ERI AQ S YG LSVL + F + P VF Sbjct: 118 VLDHRDQ---VQEVVCMLQKEVAERIAAQPGSKTYGILSVLLQAYYHISYDFTVPPDVFN 174 Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + + C + K+I ++ F RRKTLR +LK + + L + Sbjct: 175 PPPKVYSGVISLQRNKVKKLDCDEKLFKRIVKQGFNNRRKTLRNALKSIQLPDTLKPNEM 234 Query: 256 ETNLRAENLSIEDFCRITNI 275 N RAE LS+ F +T + Sbjct: 235 -LNKRAEQLSVAHFVELTQL 253 >gi|281348842|gb|EFB24426.1| hypothetical protein PANDA_004390 [Ailuropoda melanoleuca] Length = 298 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 19/275 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + + S ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A Sbjct: 18 RELKSAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KA 76 Query: 71 RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI E D + L P ++L+++ D LK D F +ANLPY Sbjct: 77 KKVIACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKTDLPFF------DACVANLPYQ 130 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + Sbjct: 131 ISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 187 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + + F P PKV S+V+ P P P + + + F ++ KTL + K + Sbjct: 188 KVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQ 247 Query: 249 LLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278 LL + + + E+ SI D +I ILT Sbjct: 248 LLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 280 >gi|296194498|ref|XP_002806669.1| PREDICTED: LOW QUALITY PROTEIN: probable dimethyladenosine transferase-like [Callithrix jacchus] Length = 313 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 19/275 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + + S ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A Sbjct: 20 REVKSAGGLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KA 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KV+ E D + L P ++L+++ D LK D F +ANLPY Sbjct: 79 KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DACVANLPYQ 132 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + Sbjct: 133 ISSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + + F P PKV S+V+ P P P + + + F ++ KTL + K + Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQ 249 Query: 249 LLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278 LL + + + E+ SI D +I ILT Sbjct: 250 LLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|301064596|ref|ZP_07204992.1| dimethyladenosine transferase [delta proteobacterium NaphS2] gi|300441344|gb|EFK05713.1| dimethyladenosine transferase [delta proteobacterium NaphS2] Length = 282 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 86/270 (31%), Positives = 120/270 (44%), Gaps = 17/270 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P K +GQNFL+D I KI S TV+EIG G G LT L + ++ +EKD Sbjct: 14 RPNKRLGQNFLVDPGISVKIVSLSRFTPEDTVLEIGPGKGALTIPLAAR-VKHILAVEKD 72 Query: 80 QQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIR-IIANLPYNIGTRLLFNW 137 + L + N + ++ D LK+D+ + +I NLPYNI + LL Sbjct: 73 GRLADWLDNRLKMAGINNVTLLHGDILKLDWLDLKSYFPGRMPVIGNLPYNISSPLLEKM 132 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 W L+FQKEV R+TA S YG LS+L + + + FFP Sbjct: 133 CEKPQW---IAQAILMFQKEVARRLTAVTGSKAYGALSLLVQYHAEVLSRLTVLKGSFFP 189 Query: 198 SPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGE------- 247 PKV S V+ P P KK+ + AF RRKT+ SL + Sbjct: 190 VPKVDSMVVSLD-FEKPYPRRAVNEAVFKKVVKGAFMHRRKTIINSLSGALPDQTRESLL 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L GI+ + R E L + DF R+++ L Sbjct: 249 EALAACGIDPSKRGEALEMGDFLRLSSALQ 278 >gi|300778905|ref|ZP_07088763.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910] gi|300504415|gb|EFK35555.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910] Length = 256 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 89/263 (33%), Positives = 125/263 (47%), Gaps = 10/263 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL D NI +KI E + ++E+G G G LT+ LL + + + E Sbjct: 3 VKAKKHLGQHFLTDENIARKIVEGLSFENYNNIMEVGPGMGVLTKYLLE-KDQNIYLAEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + LK+ ++ + D LK DF F I II N PYNI +++LF + Sbjct: 62 DTESIEYLKNNYTKVTEETFV--GDFLKQDFN--FIKEDQIAIIGNFPYNISSQILFQIV 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + +FQKEV ER A + YG LSVL + MF + +VF P Sbjct: 118 DHYQLIP---EMVGMFQKEVAERTAAVPRTKDYGILSVLIQAYYDVSYMFTVHENVFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + E L K I + F +RRK L +LK L L Sbjct: 175 PKVKSGVIRLTRNPKEGLAGNEVLFKQIVKAGFNQRRKKLSNALKILNTPEALKGHEF-L 233 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 + RAE LS+ DF N+ +NQ Sbjct: 234 DKRAEELSVADFIHFANLWKENQ 256 >gi|167533147|ref|XP_001748254.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773374|gb|EDQ87015.1| predicted protein [Monosiga brevicollis MX1] Length = 345 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 12/238 (5%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 I+ K GQ+ L + +++ I + + TV+EIG G GNLT LL G +KV+ Sbjct: 32 KSGIVFNKDFGQHILKNPLVVQGIIDKAAIKSTDTVLEIGPGTGNLTVKLLEKG-KKVVA 90 Query: 76 IEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D + L+ P +L ++ D LK D FF++ +AN+PY I + Sbjct: 91 CEVDPRLAAELQKRVMGTPLHRKLHLVMGDVLKADLP-FFDVC-----VANMPYQISSPF 144 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + P + L+FQ+E +R+ A+ Y RLSV T + + + + Sbjct: 145 VFKIL---LHRPLFRCAVLMFQREFAQRLVAKPGDALYCRLSVNTQLLARVDHVMKVGRN 201 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S+V+ P P P E + + AF ++ KTL LL Sbjct: 202 NFRPPPKVESSVVRIEPRNPPPPVDFEEWDGLLRIAFIRKNKTLAACFHSKSVLKLLE 259 >gi|239930763|ref|ZP_04687716.1| dimethyladenosine transferase [Streptomyces ghanaensis ATCC 14672] gi|291439129|ref|ZP_06578519.1| dimethyladenosine transferase dimethyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291342024|gb|EFE68980.1| dimethyladenosine transferase dimethyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 293 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 18/288 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 13 PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 72 Query: 67 TLGARKVIVIEKDQQFFPILKD----ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L R ++ DA+ V +P ++ Sbjct: 73 E-AADRVTAVEIDDVLAAALPATVAARVPGRAERFALVHSDAMHVTE---LPGPAPTALV 128 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 129 ANLPYNVAVPVLLHMLET---FPSIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 185 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P V S ++ + P + + AF +RRKTLR + Sbjct: 186 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPPKTTASRREVFAVVDAAFAQRRKTLRAA 245 Query: 241 LKRLGGENLLHQAG-----IETNLRAENLSIEDFCRITNILTDNQDIA 283 L G +A + R E+L++E+F RI + A Sbjct: 246 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAEHAPHKESAA 293 >gi|291298533|ref|YP_003509811.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM 44728] gi|290567753|gb|ADD40718.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM 44728] Length = 281 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 131/283 (46%), Gaps = 16/283 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + ++ I + P K +GQNF++D N +++IAE++ VIE+G G G+ Sbjct: 1 MTELLGAADIRRIAEALTVRPAKALGQNFVIDGNTVRRIAEAAKLSPDDIVIEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 LT LL A++V +E D + L + +L + DA+ V + F Sbjct: 61 LTLALLP-KAKRVHAVEIDARLASALTATVNSRAGDDAAKLRVHHADAMTVAEDGF--DE 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P ++ANLPYN+ ++ + +++ P ++ Q EV ER+TA+ + YG S+ Sbjct: 118 PPTALVANLPYNVAVPVVLHLLAS---LPSLRQGLVMVQSEVAERLTAKPGTKIYGIPSL 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 W A + VF+P P V S ++ F P P + AF +RRKT Sbjct: 175 KLAWYASARRAGTVPRGVFWPVPNVDSGLVAFE-RREPPPGDRREVFAAVDAAFAQRRKT 233 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 LR +L G E +L A ++ R E L I F RI Sbjct: 234 LRIALSDWAGGPDRAEAILRAADVDPRTRGEALDITTFARIAR 276 >gi|255016922|ref|ZP_05289048.1| dimethyladenosine transferase [Listeria monocytogenes FSL F2-515] Length = 255 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 21/257 (8%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 +I +++ VIEIG G G LT+ L +V+ E DQ+ PIL D S + N + Sbjct: 3 RITDTAEITKETNVIEIGPGIGALTEQLAKT-TNEVVAFEIDQRLLPILDDTLSAY-NNV 60 Query: 98 EIIQDDALKVDFEK-----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 +++ D LK D E+ F P++I+ANLPY + T ++ + + +S+T Sbjct: 61 KVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPYYVTTPIILKLLHDNIPA---DSMTF 117 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEV +RI+A ++ YG L++ + +A + F + VF P P V S VIH Sbjct: 118 MLQKEVADRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLKRRK 177 Query: 213 NPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRA 261 P+ E ++T+ +F +RRKTL +L L+ GI+ R Sbjct: 178 EPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRG 237 Query: 262 ENLSIEDFCRITNILTD 278 E L I +F +++N L D Sbjct: 238 ETLDIPEFAKLSNFLGD 254 >gi|167750299|ref|ZP_02422426.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702] gi|167656659|gb|EDS00789.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702] Length = 287 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 17/289 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + +++ + + K +GQNFL++ + KIAE G+ + IEIG G G Sbjct: 1 MKLTD-ISTIRQLFEKHGFSFTKSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGV 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ L KV IE D PIL + ++ N +E+I D ++ D K P Sbjct: 60 LTRELAKRC-EKVAAIEIDTGLKPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDM 117 Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + ANLPY I + ++ + +++T++ Q E +RI A S G ++ Sbjct: 118 DVIVCANLPYYITSPVIMKLLEEKLP---IKAITVMVQLEAADRICAAVGSRECGAITAS 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + K +F ++ F P+P V S VI + P ++ ++AF +RRK Sbjct: 175 INYYAKPKKLFRVNRGSFMPAPNVDSAVISLERYEQPPYKVDNEPLFFEVIKQAFAQRRK 234 Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 L + + + GI RAE L++ + ++ I+ + Sbjct: 235 QLANPVSAYFKIPKAVLAEKMTEGGIPATARAEQLTMAELVKLYEIIDE 283 >gi|20090300|ref|NP_616375.1| dimethyladenosine transferase [Methanosarcina acetivorans C2A] gi|27151576|sp|Q8TQU8|RSMA_METAC RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|19915300|gb|AAM04855.1| dimethyladenosine rRNA methyltransferase [Methanosarcina acetivorans C2A] Length = 269 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 142/278 (51%), Gaps = 23/278 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +++IL+ Y I Q+FL+D+ L +I ++ T++EIGAG GNLT+ L Sbjct: 2 VRSILNKYNIKG-GTFDQHFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERLARR- 59 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI +E D +L D + N +E+I DALKVDF +F ++++NLPY+I Sbjct: 60 AKKVIAVELDPALVSVLHDRFDKVEN-IEVIAGDALKVDFPEF------DKVVSNLPYSI 112 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + ++ L++Q E R+ + Y RL+V T + A+++ Sbjct: 113 SSEITFKLLRYK-----FKLGILMYQYEFAARMVSPPGRKDYSRLTVDTYYFADASILMK 167 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQS-------L 241 + F P+P+V S V+ +P +P E+ + F +RRK LR S L Sbjct: 168 VPKGAFQPAPEVDSAVVKLVPRPSPFEVRDEAFFLEFVAAVFSQRRKKLRNSILNTNSML 227 Query: 242 KRLGGENLLHQAGIET-NLRAENLSIEDFCRITNILTD 278 K + +++Q + N RAENL+ E+ + N+L D Sbjct: 228 KIPDIKEVVNQLPDDFVNKRAENLTPEELASVANMLFD 265 >gi|148907015|gb|ABR16651.1| unknown [Picea sitchensis] Length = 346 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 14/256 (5%) Query: 1 MTMNNKSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M + + + + I +K GQ+ L + +++ I + +G V+EIG G Sbjct: 1 MAGGKERKTRASAAQRHQGGIQFQKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGT 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNIS 116 GNLT LL + A+KVI +E D + L+ + RL++IQ D LK + F Sbjct: 61 GNLTMKLLEV-AKKVIAVELDPRMVLELQRRVQGTSSAIRLQVIQGDVLKSELPYF---- 115 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +AN+PY I + L F +S P + ++FQ+E R+ A+ Y RLSV Sbjct: 116 --DVCVANIPYQISSPLTFKLLSHR---PIFRCAIIMFQREFAMRLVAKPGDNLYCRLSV 170 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 T + + + + + F P PKV S+V+ P P + + + F ++ KT Sbjct: 171 NTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRNPLPPISFKEWDGMVRLCFNRKNKT 230 Query: 237 LRQSLKRLGGENLLHQ 252 L ++ +LL + Sbjct: 231 LGAIFRQKAILSLLEK 246 >gi|157103251|ref|XP_001647892.1| dimethyladenosine transferase [Aedes aegypti] gi|157126646|ref|XP_001654689.1| dimethyladenosine transferase [Aedes aegypti] gi|108873212|gb|EAT37437.1| dimethyladenosine transferase [Aedes aegypti] gi|108884724|gb|EAT48949.1| dimethyladenosine transferase [Aedes aegypti] Length = 306 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 126/302 (41%), Gaps = 40/302 (13%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 +K + T ++ I+ K GQ+ L + I+ + + +G V+EIG G GN+T Sbjct: 7 DKKSRVHTDVAKQGIVFNKDFGQHILKNPLIVTSMLDKAGLRPTDVVLEIGPGTGNMTVK 66 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122 LL +KV+ E D + L+ P ++L+I+ D LK D F + Sbjct: 67 LLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLPFF------DCCV 119 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 AN+PY I + +F + PF+ L+FQ E +R+ A+ Y RLSV T Sbjct: 120 ANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLA 176 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + M+ + + F P PKV S+V+ P P +T+ AF ++ KTL + K Sbjct: 177 RVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPINYTEWDGLTRIAFLRKNKTLAAAFK 236 Query: 243 RLGGENLLHQ---------------------------AGIETNL-RAENLSIEDFCRITN 274 + L Q A I+ RA + I+DF + + Sbjct: 237 QTSVMTALEQNFKMQCSLKNQDLPEGFSIKEKVEGILAKIDAGAKRARTMDIDDFMAVLH 296 Query: 275 IL 276 Sbjct: 297 AF 298 >gi|170016041|ref|NP_001116194.1| DIM1 dimethyladenosine transferase 1-like [Xenopus (Silurana) tropicalis] gi|169641837|gb|AAI60444.1| LOC779588 protein [Xenopus (Silurana) tropicalis] Length = 306 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 15/267 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A++V Sbjct: 16 VKSQGVLFNTVLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D + L+ ++L+++ D LK D FF++ +ANLPY I + Sbjct: 75 VACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL + K + LL Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLE 245 Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277 + I +L N+S+ + I + Sbjct: 246 KNYKIHCSL--HNISVPENFSIAEKIE 270 >gi|72382118|ref|YP_291473.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A] gi|119365047|sp|Q46L58|RSMA_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|72001968|gb|AAZ57770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A] Length = 291 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 12/275 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L+ ++ IP+K GQ++L D +L +I +++ V+E+G G G LT+ L+ AR + Sbjct: 7 LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFI 66 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 IE D+ LK S H N+ + + D L + ++ +++AN+PYNI L Sbjct: 67 QAIELDRDLVVGLKKRFS-HQNKFSLREGDILSAPLDAENGLTIN-KVVANIPYNITGPL 124 Query: 134 LFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L I P +E+L LL QKEV +R+ A+ + ++ LSV K + D+ Sbjct: 125 LKRLIGELRKAPDNCFETLVLLMQKEVAQRLLARPGTSNFSALSVRIQLLAKCQDVCDVP 184 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG-- 246 F P+PKV S V+ P + P E L+K+ + AF RRK LR ++ Sbjct: 185 SKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTIGSFVTSN 244 Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + GI + R + +S ++ + L + Sbjct: 245 DQIKEFFAYRGISLDQRPQEISPSNWFGLAKALKE 279 >gi|315656078|ref|ZP_07908969.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493080|gb|EFU82680.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 309 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 144/297 (48%), Gaps = 34/297 (11%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + + + ++ P K GQNF+ D +++IA ++G G TV+EIG G G+LT LL Sbjct: 6 ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119 LG KVI IE DQ+ L +QH L ++ DAL++ D E ++P Sbjct: 66 ELGC-KVIAIEIDQRLATALPVTVAQHGANSADLCVMTQDALEIAGEADLELPTGWAAPH 124 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R++ANLPYN+ T LL +++ P ES ++ Q EV +R A YG SV Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL------------------NPIPCCLES 221 W +A F + +VF+P P V STV+ F I + Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241 Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 + AF +RRKTLRQSL G NLL AGI LRAE LS+ DF +I Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298 >gi|15226591|ref|NP_182264.1| dimethyladenosine transferase, putative [Arabidopsis thaliana] gi|2529685|gb|AAC62868.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|14532650|gb|AAK64053.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|21280901|gb|AAM44912.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|330255745|gb|AEC10839.1| dimethyladenosine transferase [Arabidopsis thaliana] Length = 353 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 14/251 (5%) Query: 6 KSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 S + +HY I K GQ+ L + ++ I + +G ++EIG G GNLT+ Sbjct: 11 PKASNRAPSNHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTK 70 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI 121 LL G ++VI +E D + L+ P NRL++IQ D LK + +F Sbjct: 71 KLLEAG-KEVIAVELDSRMVLELQRRFQGTPFSNRLKVIQGDVLKTELPRF------DIC 123 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +AN+PY I + L F + P + +++Q+E R+ AQ Y RLSV T Sbjct: 124 VANIPYQISSPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLY 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + + + + F P PKV S+V+ P + + F ++ KTL Sbjct: 181 ARVSHLLKVGKNNFRPPPKVDSSVVRIEPRRPGPQVNKKEWDGFLRVCFIRKNKTLGSIF 240 Query: 242 KRLGGENLLHQ 252 K+ ++L + Sbjct: 241 KQKSVLSMLEK 251 >gi|149732873|ref|XP_001493943.1| PREDICTED: similar to Dimethyladenosine transferase [Equus caballus] Length = 313 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KVI E Sbjct: 27 GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P +L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPLAGKLQVMVGDVLKTDLPFF------DACVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQRLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|284038180|ref|YP_003388110.1| dimethyladenosine transferase [Spirosoma linguale DSM 74] gi|283817473|gb|ADB39311.1| dimethyladenosine transferase [Spirosoma linguale DSM 74] Length = 271 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 84/274 (30%), Positives = 131/274 (47%), Gaps = 17/274 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAES------SGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 + PKK +GQ+FL DL+I ++IAE + + V+EIG G G LTQ LL Sbjct: 3 VKPKKELGQHFLKDLSIAQRIAELLTGHAGADGVPYTKVLEIGPGTGVLTQFLLQNSQFD 62 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYN 128 VIE D++ LK R I+ D L + + + + P +I N PYN Sbjct: 63 TYVIEIDRESVEYLKQYVPALEGR--ILASDFLNIRPDLLPTKQPDNTEPFAVIGNFPYN 120 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T++LF + P + +FQ+EV +R+ + + YG LSVL F Sbjct: 121 ISTQILFKVLDMRDRVP---EVVGMFQREVAQRVASGPGNKDYGILSVLLQAWYDIKYEF 177 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P VF P PKV S VI + + C ++ ++ + F +RRKTLR +LK L Sbjct: 178 TVDPSVFNPPPKVFSGVISLKRNAVTDLGCDVKKFTQVVKHGFSQRRKTLRNALKPLSPS 237 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + + RAE L + +F +T ++++ + Sbjct: 238 EAALASPF-MDKRAEQLGVAEFVALTILMSERAE 270 >gi|284928980|ref|YP_003421502.1| dimethyladenosine transferase [cyanobacterium UCYN-A] gi|284809439|gb|ADB95144.1| dimethyladenosine transferase [cyanobacterium UCYN-A] Length = 274 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 13/270 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P+K GQ++L D +L++I +S+ V+EIG G G LT LL V IE Sbjct: 2 IYPRKRFGQHWLKDNTVLERIIKSAHLTKIDKVLEIGPGTGILTSRLLPE-VSSVTAIEV 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLL 134 D+ + L + L ++Q+D LK+D + +++AN+PYNI +L Sbjct: 61 DRDLYEQLVKKF-HYCKNLLLLQEDILKIDLFTEISNYNLFWPMNKVVANIPYNITNPIL 119 Query: 135 FNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + + + P +E + LL QKEV +RITA + YG LS + + D+ Sbjct: 120 EKLLGSVSEPYNLPYEIIVLLVQKEVAKRITALPGNKMYGALSAKIQYLAHCNYICDVPS 179 Query: 193 HVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGE 247 F+P+PKV S +I PH L+ L+K+ F RRK L +LK + Sbjct: 180 KAFYPAPKVDSAIITLRPHILDSSVLNRPHLEKLINLGFSSRRKMLHNNLKSIMDIKYIT 239 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + ++ +RAENLSI + ++N L Sbjct: 240 EFLEKNNLDLKVRAENLSINQWIELSNYLY 269 >gi|226227288|ref|YP_002761394.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27] gi|226090479|dbj|BAH38924.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27] Length = 303 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 16/265 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K GQ+FL D +L IA++ G + TVIEIG G G LT +L+ AR+VI IE D+ Sbjct: 27 PRKRFGQHFLKDTRVLSSIADALGDVRDRTVIEIGPGRGALTDLLVER-ARRVIAIEIDR 85 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + P+ +EI++ D L+ + P + N+PY I T ++F+ + Sbjct: 86 DLAAHLRARYADRPH-VEIVEADVLQTNLAALA--GEPYVLAGNVPYYITTPIIFHALVQ 142 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L QKEV +R+ A YG LSV ++ + P F P+P Sbjct: 143 ----PRPDVAVYLVQKEVADRMAAPPGDKIYGALSVNLQAVVGVELIRKVPPSAFNPAPA 198 Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL------LHQ 252 V S V+ +P + + P + AFG RRK L + ++ + + + Sbjct: 199 VDSAVVRVVPRPDAVVEPELEARFRSFVLAAFGLRRKQLIRVVRTIASFDAERAGAVIAA 258 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 G+ R E L+ +F ++ L Sbjct: 259 CGLSPEARPETLTPAEFAKLVRALR 283 >gi|56751211|ref|YP_171912.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301] gi|81299122|ref|YP_399330.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942] gi|62900470|sp|Q5N2S8|RSMA_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119365855|sp|Q31RH6|RSMA_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56686170|dbj|BAD79392.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301] gi|81168003|gb|ABB56343.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942] Length = 279 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 127/275 (46%), Gaps = 13/275 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 +K GQ++L IL +I ++ V+EIG G G LTQ LL ++ +E D+ Sbjct: 3 ARKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLA-AVDGLVAVELDR 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPYNIGTRLLFN 136 L+ Q N +++ D L++D+ P +++AN+PYNI +L + Sbjct: 62 DLIGQLQQRFGQAEN-FCLLEGDILQLDWTAAIADRPRFANPSKVVANIPYNITGPILQS 120 Query: 137 WISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + P P +E L LL Q+EV +R+ A YG LSV + + + P Sbjct: 121 LLGTIAQPRRPAFERLVLLVQQEVADRLCATPGQRAYGALSVRVQYLASCERVCAVPPKS 180 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV STVI P P C L+K+ + F +RK LR +LK L + A Sbjct: 181 FSPPPKVQSTVICLKPRPWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSSEQIEAA 240 Query: 254 G----IETNLRAENLSIEDFCRITNILTDNQDIAI 284 I RAE LSI+ + + L D D AI Sbjct: 241 FAAHQIAPEARAETLSIDQWIGLCTDLGDPTDSAI 275 >gi|329114154|ref|ZP_08242916.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter pomorum DM001] gi|326696230|gb|EGE47909.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter pomorum DM001] Length = 227 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 93/224 (41%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 E+G GPG LT+ LL A V +E D + ++++++ +PNRL++++ DALK D + Sbjct: 2 EVGPGPGGLTRALLNGPAESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTEL 61 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 ++P +IIANLPYN+ T LL W+ WE LTL+FQ EV ERI A NS HYG Sbjct: 62 --CAAPRQIIANLPYNVATPLLIGWLRQGNA---WERLTLMFQWEVAERICAAPNSQHYG 116 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFG 231 RL+VL W + ++ + P F P P V S V PH P P ++++++T AFG Sbjct: 117 RLAVLAQWCAECAIVMKLPPGAFSPPPAVWSAVASITPHAQQPAPALFKAMERVTAAAFG 176 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 +RRK LR +LK L G+ LL A I+ RAE L I +F R+ Sbjct: 177 QRRKMLRGALKGLNGDKLLAAAEIDGTRRAETLDIAEFDRLARA 220 >gi|225872206|ref|YP_002753661.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC 51196] gi|259494240|sp|C1F127|RSMA_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225792765|gb|ACO32855.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC 51196] Length = 283 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 16/281 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 KS + I +K PK +GQNFL+ + I E+ G+L TV+EIG G G +T+ L Sbjct: 11 KSREVAAISGKHK--PK--LGQNFLVSEAACRSIVEALGNLGARTVVEIGPGKGAITE-L 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A ++I IE D++ P L++ ++ + +I+DD L+VD + ++ NL Sbjct: 66 LANRAERLIAIELDRELAPRLRERFARR-ETVTVIEDDVLRVDLSALARPGEKLLVVGNL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + + +L + I + E ++ Q+EV +R+ A S YG LSV + Sbjct: 125 PYYMTSEILLHLIRHEAA---IERAVVMVQREVADRVAAGPGSRDYGLLSVTAQLHARVE 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + P F P P+V STV+ + H + + F ++RKTL +L+ Sbjct: 182 KLLTLPPGAFSPPPEVYSTVLRWTMHSRTDELGVDPTRFTGFLRSCFAQKRKTLGNNLRA 241 Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 E + AG+ +RAE LS+E + L D Sbjct: 242 AKYEPAAIAGAMQSAGVAAGVRAEELSLEALAALWRTLEDR 282 >gi|260815743|ref|XP_002602632.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae] gi|229287943|gb|EEN58644.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae] Length = 306 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K+ + I K GQ+ L + ++ + E + TV+EIG G GNLT + Sbjct: 8 KTSRTHQEVQKQGIGFNKQFGQHILKNPLVVDSMVEKAALRPTDTVLEIGPGTGNLTMKM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 + +KVI E D + L+ P ++L+++ DALK D FF+I +A Sbjct: 68 IDR-VKKVIACEIDPRLVAELQKRVQGTPSAHKLQMMVGDALKTDLP-FFDIC-----VA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + PF+ L+FQ+E +R+ A Y RLS+ + Sbjct: 121 NIPYQISSPLVFKLL---LHRPFFRCAILMFQREFAQRLVAPPGDKLYCRLSLNVQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + I + F P PKV S+V+ P P P + + + AF ++ KTL + K Sbjct: 178 VDHLMKIGRNNFRPPPKVESSVVRLEPKNPPPPINFQEWDGMVRIAFLRKNKTLGAAFKN 237 Query: 244 LGGENLLHQ 252 +LL + Sbjct: 238 SKVLSLLEK 246 >gi|72160809|ref|YP_288466.1| dimethyladenosine transferase [Thermobifida fusca YX] gi|119365858|sp|Q47SX4|RSMA_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71914541|gb|AAZ54443.1| dimethyladenosine transferase [Thermobifida fusca YX] Length = 287 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 79/291 (27%), Positives = 124/291 (42%), Gaps = 24/291 (8%) Query: 1 MTMNNKS-------HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53 MT ++ + ++ + + I P K +GQNF++D +++I ++ V+E Sbjct: 1 MTESDSADARLLTPADVRRLAAQLGIRPTKTLGQNFVIDPGTVRRIVRAAQVSPDDVVVE 60 Query: 54 IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDF 109 +G G G+LT LL R V +E D + L D + + +RL ++ DAL++ Sbjct: 61 VGPGLGSLTLALLPH-VRHVTAVEIDPRLAEALPGTVADHAPAYAHRLRVVTADALRITE 119 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 P ++ANLPYN+ ++ P E ++ Q EV ER+ A+ Sbjct: 120 ---LPDPQPTALVANLPYNVAVPVVL---HLLNLLPSLEHGLVMVQAEVAERLAARPGDR 173 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE 228 YG S W I VF+P P V S ++ P E + + Sbjct: 174 AYGAPSAKIAWYADVRRAGAIGRTVFWPVPNVDSGLVALRRRPAPPTKASREDVFAVVDA 233 Query: 229 AFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 AF +RRKTLR + E L AG++ R E L I DF RI Sbjct: 234 AFAQRRKTLRAALSSWAGSAAAAEAALRSAGVDPRSRGETLGIADFARIAE 284 >gi|169154349|emb|CAQ15218.1| novel protein similar to H.sapiens DIMT1L, DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) (DIMT1L, zgc:101122) [Danio rerio] Length = 306 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + I+ +GQ+ L + ++ I E + V+E+G G GN+T L Sbjct: 8 KKSRTHQEVKSQGIMFNTGIGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KV+ E D + L+ P N+L+I+ D LK + FF++ +A Sbjct: 68 LE-KAKKVVACELDTRLVAELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T + Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + F P PKV S+V+ P P P ++ + + AF ++ K L + K Sbjct: 178 VDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPVNFQAWDGLVRIAFVRKNKMLSAAFKS 237 Query: 244 LGGENLLHQ 252 E LL + Sbjct: 238 AAVEKLLEK 246 >gi|307172086|gb|EFN63666.1| Probable dimethyladenosine transferase [Camponotus floridanus] Length = 263 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 13/254 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + K + + I+ K GQ+ L + I++ + E + V+EIG G GN Sbjct: 1 MSKVRAVGTHKEV-ARQGILFNKSKGQHILKNPLIIQSMVEKAALKPTDVVLEIGPGTGN 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSP 118 +T +L A+KVI E D + L+ + ++L+I+ D LK D FF++ Sbjct: 60 MTVKMLE-KAKKVIACEIDPRMVAELQKRVQGTVYQSKLQIMVGDVLKSDLP-FFDLC-- 115 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +AN+PY I + L+F +S P + L+FQ+E ER+ A+ Y RLS+ T Sbjct: 116 ---VANIPYQISSPLIFKLLSHR---PIFRCAVLMFQREFAERLVAKPGDKLYCRLSINT 169 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + M+ + + F P PKV S V+ P P P + +T+ AF ++ KTL Sbjct: 170 QLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFIRKNKTLS 229 Query: 239 QSLKRLGGENLLHQ 252 + K+ LL + Sbjct: 230 ATFKQTTVITLLEK 243 >gi|255576485|ref|XP_002529134.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223531413|gb|EEF33247.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 350 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 14/251 (5%) Query: 6 KSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 K + +HY I K GQ+ L + ++ I E SG ++EIG G GNLT+ Sbjct: 10 KVKQSRAPSNHYQGGISFHKSKGQHILKNPLLVDTIVEKSGIKSTDVILEIGPGTGNLTK 69 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI 121 LL G + VI +E D + L+ P NRL++IQ D LK D F Sbjct: 70 KLLEAG-KMVIAVELDPRMVLELQRRFQGTPMSNRLKVIQGDVLKTDLPYF------DIC 122 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +AN+PY I + L F ++ P + ++FQ+E R+ AQ Y RLSV T Sbjct: 123 VANIPYQISSPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLY 179 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + + + + F P PKV S+V+ P + + F ++ KTL Sbjct: 180 ARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNAKEWDGFIRICFIRKNKTLGSIF 239 Query: 242 KRLGGENLLHQ 252 + +LL + Sbjct: 240 RIKNVLSLLEK 250 >gi|290959782|ref|YP_003490964.1| SAM-binding methyltransferase [Streptomyces scabiei 87.22] gi|260649308|emb|CBG72423.1| putative SAM-binding methyltransferase [Streptomyces scabiei 87.22] Length = 316 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ TV+E+G G G+LT LL Sbjct: 11 PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTADVRPQDTVVEVGPGLGSLTLALL 70 Query: 67 TLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D + +R ++ DA++V P ++ Sbjct: 71 ET-ADRVTAVEIDDVLAAALPATIAARMPARADRFALVHSDAMQVTE---LPGPPPTALV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 127 ANLPYNVAVPVLLHMLET---FPSIERTLVMVQAEVADRLAAGPGSKVYGVPSVKANWYA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ + P+ + + AF +RRKTLR Sbjct: 184 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTAATRREVFTVVDAAFAQRRKTLRAA 243 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L +E+F I Sbjct: 244 LAGWAGSAAAAEAALVAAGVSPQARGESLGVEEFAAIAE 282 >gi|7657198|ref|NP_055288.1| probable dimethyladenosine transferase [Homo sapiens] gi|114600097|ref|XP_517743.2| PREDICTED: probable dimethyladenosine transferase isoform 3 [Pan troglodytes] gi|27151492|sp|Q9UNQ2|DIMT1_HUMAN RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|4050050|gb|AAC97955.1| putative dimethyladenosine transferase [Homo sapiens] gi|14790071|gb|AAH10874.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Homo sapiens] gi|119571770|gb|EAW51385.1| dimethyladenosine transferase, isoform CRA_b [Homo sapiens] gi|123981158|gb|ABM82408.1| dimethyladenosine transferase [synthetic construct] gi|123995987|gb|ABM85595.1| dimethyladenosine transferase [synthetic construct] gi|123996331|gb|ABM85767.1| dimethyladenosine transferase [synthetic construct] gi|307684642|dbj|BAJ20361.1| DIM1 dimethyladenosine transferase 1-like [synthetic construct] Length = 313 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|88606758|ref|YP_505210.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ] gi|122064279|sp|Q2GK91|RSMA_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|88597821|gb|ABD43291.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ] Length = 269 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 8/261 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQ F+LD I +KI +G L+ VIE+G G G +TQ +L R++ IEKD Sbjct: 7 RTKKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRLTAIEKD 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 ++ I + H + I +D L V+ E+ + S P+++I+NLPYNI LL + Sbjct: 67 RRLSNIHSKLKEAHAE-YDCIFEDILDVNIEQLLSQS-PLKMISNLPYNISVILLLKLL- 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + +E L L+FQKEV +RI AQ N+ Y LS+L + D P +F PSP Sbjct: 124 --PYIHRFEKLILMFQKEVADRIVAQPNTKSYSILSILVQLLCDVRKVEDFPPEIFSPSP 181 Query: 200 KVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIE 256 KV S+VI P L+P ++ ++ F RRKT+R SLK + L I+ Sbjct: 182 KVYSSVIEITPLLSPRFSVDNSYFAQVLKKLFHCRRKTIRNSLKSCIKDADALFIGCNID 241 Query: 257 TNLRAENLSIEDFCRITNILT 277 N RAE+L+IE C +TN L Sbjct: 242 PNARAESLTIEQLCSLTNALK 262 >gi|332233664|ref|XP_003266024.1| PREDICTED: probable dimethyladenosine transferase [Nomascus leucogenys] Length = 313 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|228989249|ref|ZP_04149242.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442] gi|228770459|gb|EEM19030.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442] Length = 254 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 20/255 (7%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 + + IEIG G G LT+ L A+KV+ E DQ+ PIL + + + N + +I Sbjct: 2 DYAEIGPESGAIEIGPGIGALTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN-VTVI 59 Query: 101 QDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 D LK D + F + ++ANLPY + T +LF + ++ QK Sbjct: 60 NKDILKADVHEVFGEQFEKGQDVMVVANLPYYVTTPILFKLLEEQLP---VRGFVVMMQK 116 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 EVG+R+ A+ + YG LS+ + T+ + + VF P P V S VI + PI Sbjct: 117 EVGDRLAAKPGTKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRPKPIV 176 Query: 217 C--CLESLKKITQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLS 265 + ++ + +F +RRKTL +L + +L + GI+ R E LS Sbjct: 177 EVKDEKFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLS 236 Query: 266 IEDFCRITNILTDNQ 280 IE+F ++N L ++ Sbjct: 237 IEEFAALSNALVSHK 251 >gi|67923799|ref|ZP_00517261.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501] gi|67854342|gb|EAM49639.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501] Length = 271 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 13/271 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L++I +++ + ++EIG G G LT+ LL L V+ +E D Sbjct: 3 QPRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VDSVLAVELD 61 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLF 135 L + N L ++Q D LK+D +++AN+PYNI + +L Sbjct: 62 WDLCKKLVKSFGNYDNFL-LLQGDILKLDITTEAQDFPKFLPINKVVANIPYNITSPILE 120 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P PF++ + LL QKEV +RI A + YG LSV + + D+ Sbjct: 121 KLLGRISSPKTPFYDLIVLLIQKEVAQRIVAYPGNKTYGALSVKMQYLADCNYICDVPRK 180 Query: 194 VFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--- 249 F P PKV S VI F P + + L+ + F RRK LR +LK L + Sbjct: 181 AFSPPPKVDSAVITFRPRVLANSAVDPKRLETLINLGFSNRRKMLRNNLKSLIDSDRLGK 240 Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + + +RAE L I + ++N + Sbjct: 241 FLREIDLNEQVRAEKLDINQWIALSNHFSQQ 271 >gi|126315217|ref|XP_001366147.1| PREDICTED: similar to Dimethyladenosine transferase [Monodelphis domestica] Length = 309 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 23 GVMFNTGLGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 81 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 82 LDPRLVAELHKRVQGTPQASKLQVMVGDVLKTDLPFF------DACVANLPYQISSPFVF 135 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 136 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 192 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 193 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 252 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + E+ SI D +I IL D Sbjct: 253 IHCSVHNIAIPEDFSIAD--KIQKILMD 278 >gi|171464150|ref|YP_001798263.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193688|gb|ACB44649.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 264 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 15/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G G LT LL + ++E Sbjct: 2 HRARKRFGQNFLQDNGIIYSIVALINPSADMRVIEIGPGLGALTLPLL-SNLDHLDLLEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134 D+ + + Q L + + DALK DF + S +++ NLPYNI + LL Sbjct: 61 DRDLVAFWNEKNLQG---LAVTEGDALKFDFLAWAQNRSTKQGLCKVVGNLPYNISSPLL 117 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +SA + + Q EV ER+ A+ S + RLSV+ R ++ ++ P Sbjct: 118 FHLVSAAA---SIDEQVFMLQAEVVERMVAKAGSSDFSRLSVMLQARYDMELVLEVPPEA 174 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S V+ IP + E +L+K+ AF +RRK LR +L+ L + Sbjct: 175 FDPRPKVNSAVVRMIPRRDFTLSDAEWSALEKVVAAAFSQRRKMLRTNLQDFADRLGLTE 234 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 +E RA+++S++ + +L Sbjct: 235 --VELKARAQDISVDHYIEWAKVLA 257 >gi|308807092|ref|XP_003080857.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri] gi|116059318|emb|CAL55025.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri] Length = 344 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ I K GQ+ L + I+ I + +G V+EIG G GNLT LL +KV+ Sbjct: 35 AYQGIQFLKSFGQHILKNPAIVTAIIDKAGVKSTDVVLEIGPGTGNLTTKLLDAC-KKVV 93 Query: 75 VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 +E D + L+ P ++LEIIQ D LKVD F +AN+PY I + Sbjct: 94 AVEFDPRMVLELRRRVQGDPVWNSKLEIIQGDFLKVDLPYF------DVCVANVPYQISS 147 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F ++ P + S TL+FQ+E R+ A Y RLSV T + + + Sbjct: 148 PLIFKLLAHR---PMFRSATLMFQREFAMRLVAPPGDSLYCRLSVNTQLLARTQHILKVG 204 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P IP + + + FG++ KTL + LL Sbjct: 205 KNNFRPPPKVDSSVVRLEPRHPQIPVNFKEWDGLVRFCFGRKNKTLGGIFRTKNVLELLT 264 >gi|78357102|ref|YP_388551.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|119365022|sp|Q30ZP0|RSMA_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78219507|gb|ABB38856.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 280 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 84/264 (31%), Positives = 124/264 (46%), Gaps = 9/264 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQNFL D NI KI + VIEIG GPG LT + + ++EKD Sbjct: 19 RAKKSLGQNFLQDKNISAKIVAALQIGPADCVIEIGPGPGALTDFIQKAAPASLWLLEKD 78 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + S+ P +++ DAL +E+ + S ++I NLPYN+ + L+++ +S Sbjct: 79 TYWAGEHRRSDSRTPVEKQVVLTDALTFPWERLSDDRS-WKLIGNLPYNVASPLMWDCLS 137 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEVG+RI A S YG LSV T + P VF P P Sbjct: 138 LAA----FSRAVFMIQKEVGDRIVAAPRSRQYGALSVWLQSHTVPRKELIVPPTVFKPRP 193 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255 KV S V+ F P + +L + + F +RRK L++ LKR + Q G+ Sbjct: 194 KVDSAVLSFAPLPLSARNFSPGALSVLLKICFQQRRKQLQKILKRYWSDAVCGWFEQQGL 253 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 R E LS F ++ N+L Sbjct: 254 PPAARPEELSPNQFQQLANLLESQ 277 >gi|124025654|ref|YP_001014770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL1A] gi|166221688|sp|A2C1Z5|RSMA_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123960722|gb|ABM75505.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. NATL1A] Length = 291 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 12/275 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L+ ++ IP+K GQ++L D +L +I +++ V+E+G G G LT+ L+ A+ + Sbjct: 7 LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFI 66 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 IE D+ LK + H N+ + + D L + ++ +++AN+PYNI L Sbjct: 67 QAIELDRDLVIGLKKRFN-HQNKFSLREGDILSAPLDAENGVTIN-KVVANIPYNITGPL 124 Query: 134 LFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L I P +E+L LL QKEV +R+ A+ + ++ LSV K + D+ Sbjct: 125 LKRLIGELRKAPENSFETLVLLMQKEVAQRLLARPGNSNFSALSVRVQLLAKCQDVCDVP 184 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG-- 246 F P+PKV S V+ P + P E L+K+ + AF RRK LR ++ Sbjct: 185 SKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTIGSFVTSN 244 Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + GI + R + +S ++ + L + Sbjct: 245 DQIKEFFAYRGISLDQRPQEISPSNWFGLAKALKE 279 >gi|302035917|ref|YP_003796239.1| dimethyladenosine transferase [Candidatus Nitrospira defluvii] gi|300603981|emb|CBK40313.1| Dimethyladenosine transferase [Candidatus Nitrospira defluvii] Length = 267 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 127/261 (48%), Gaps = 15/261 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQNFL+D NI++KI + TV+EIG G G LT L A +VI +E D Q Sbjct: 10 KRLGQNFLIDPNIIRKIVSLAALGPEDTVLEIGPGRGALTAGLCAE-AGRVIAVEIDPQL 68 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 P L+D H L++ DAL FE ++ANLPY + T +LF + A Sbjct: 69 QPHLQDSL-GHCRNLDLRIGDALAFPFETL---PLRTVVVANLPYYVSTPILFALLDARA 124 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + L L+ Q EV R+ A+ NS YG LSVLT + + F +S + F P P V Sbjct: 125 ---RLDRLVLMLQTEVALRLAAKPNSEDYGVLSVLTQEAAEVDLAFRVSANCFRPRPTVG 181 Query: 203 STVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGI 255 S V+H P E +++ + +F RRKTL SL+ G +AG+ Sbjct: 182 SAVVHLRIKTQEGFEPVRHERFRRLVRASFAHRRKTLVNSLRDEGYPPEQIARATAEAGV 241 Query: 256 ETNLRAENLSIEDFCRITNIL 276 RAE L+++D+ + Sbjct: 242 PPQARAEMLTLDDYRTLARAF 262 >gi|326389221|ref|ZP_08210789.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW 200] gi|325994584|gb|EGD53008.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW 200] Length = 273 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 16/264 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQNF+ D NIL KI +SG V+EIG G G LT+ L +KVI E D++ + Sbjct: 12 WGQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKR-VKKVISFEIDRELYE 70 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141 K+ + + N + I + D +KVD K N P +++ANLPY I + ++ + Sbjct: 71 ATKEKLNIYNNVIIINE-DIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 F + +T+L QKEV ERI A + YG L+V ++ K +F++ P VF P PKV Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKV 185 Query: 202 TSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254 S+++ + + + AFG+RRK L +LK LG + ++ +A Sbjct: 186 DSSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 + R E LSIE+F + N++ D Sbjct: 246 LSPQRRGETLSIEEFAALANVIYD 269 >gi|21313560|ref|NP_079723.1| probable dimethyladenosine transferase [Mus musculus] gi|27151491|sp|Q9D0D4|DIMT1_MOUSE RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|12847736|dbj|BAB27687.1| unnamed protein product [Mus musculus] gi|18043925|gb|AAH19799.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Mus musculus] gi|74148362|dbj|BAE36330.1| unnamed protein product [Mus musculus] gi|148686528|gb|EDL18475.1| RIKEN cDNA 1500031M22, isoform CRA_b [Mus musculus] Length = 313 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 ++ + E+ SI D +I ILT Sbjct: 257 IHCSVQNTVIPEDFSIAD--KIQQILTS 282 >gi|145349952|ref|XP_001419390.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579621|gb|ABO97683.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 320 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ I K GQ+ L + I+ I + +G V+EIG G GNLT LL +KVI Sbjct: 35 AYQGIQFLKSFGQHILKNPAIVNAIVDKAGVKSTDVVLEIGPGTGNLTTKLLDAC-KKVI 93 Query: 75 VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 +E D + L+ P +RLEIIQ D LKVD F +AN+PY I + Sbjct: 94 AVEFDPRMVLELRRRVQSDPAQNSRLEIIQGDFLKVDLPYF------DVCVANVPYQISS 147 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F ++ P + S TL+FQ+E R+ A Y RLSV T + + + Sbjct: 148 PLIFKLLAHR---PMFRSATLMFQREFAMRLVAPPGDALYCRLSVNTQLLARTQHILKVG 204 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P IP + + + FG++ KTL + LL Sbjct: 205 KNNFRPPPKVDSSVVRIEPRHPQIPVNFKEWDGLVRFCFGRKNKTLGGIFRTKNVLELLT 264 >gi|148239702|ref|YP_001225089.1| dimethyladenosine transferase [Synechococcus sp. WH 7803] gi|166221710|sp|A5GLH7|RSMA_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147848241|emb|CAK23792.1| Dimethyladenosine transferase [Synechococcus sp. WH 7803] Length = 280 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 11/275 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 P+K GQ++L D +L +I ++S D V+E+G G G LT+ LL A V +E Sbjct: 5 GHTPRKRFGQHWLRDERVLDRILDASDLGDDDRVLEVGPGRGALTERLLASSAAAVHAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+D P R + + D L V + +++AN+PYNI LL Sbjct: 65 LDRDLVAGLQDRFGDSP-RFSLREGDVLAVPL-TLPDGQRATKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I P P ++ L LL QKEV ERI A+ + + LSV K + + + P F Sbjct: 123 IGRLDQPVDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAKCSSVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 P PKV S VI P P P ++++ ++AF RRK LR +L + L Sbjct: 183 QPPPKVHSEVIRLDPLPLEQRPDPVICRRVERLLKQAFLARRKMLRNTLTVSQPLSELET 242 Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 QAGI+ R + ++ + + L A Sbjct: 243 ITQQAGIDLRQRPQEVAPHAWVELARGLNQADSAA 277 >gi|21673632|ref|NP_661697.1| dimethyladenosine transferase [Chlorobium tepidum TLS] gi|27151567|sp|Q8KE87|RSMA_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21646748|gb|AAM72039.1| dimethyladenosine transferase [Chlorobium tepidum TLS] Length = 275 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 126/266 (47%), Gaps = 17/266 (6%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H I KK +GQNFLLD NI +KI SG +G V+EIG G G LT +L + Sbjct: 7 KHTHIAAKKKLGQNFLLDRNIPRKIVRESGIKEGDRVVEIGPGFGALTTAILEVMP-SFT 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 IEKD++ ++ +HP ++E+I+DD LKV E + ++ N+PY+I + +L Sbjct: 66 AIEKDRELAKFNRE---EHP-QIELIEDDFLKVPLEPLA-AGGKLSVLGNIPYSITSPIL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + S TL+ Q EV +RI A + YG L+V +F + V Sbjct: 121 FRLLDNR---HLIASATLMIQHEVAQRIAAVPGTKEYGILAVQMQAFCDVKYLFKVGRAV 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P V S VI +P E + + F +RRKTL +LK +G Sbjct: 178 FKPRPDVDSAVIKMVPKAVDPVKDSEGFRTFVRRVFHQRRKTLLNNLKEYY-----DTSG 232 Query: 255 IET---NLRAENLSIEDFCRITNILT 277 + LRAE+LS+ + L Sbjct: 233 VPEPTLKLRAESLSVPALITLFTQLK 258 >gi|297675337|ref|XP_002815639.1| PREDICTED: probable dimethyladenosine transferase-like isoform 1 [Pongo abelii] Length = 313 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 68/258 (26%), Positives = 114/258 (44%), Gaps = 17/258 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIED 268 + + E+ SI D Sbjct: 257 IHCSVHNIIIPEDFSIAD 274 >gi|149059278|gb|EDM10285.1| similar to RIKEN cDNA 1500031M22 (predicted), isoform CRA_a [Rattus norvegicus] Length = 313 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 19/281 (6%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 ++ + ++ +GQ+ L + I+ I + + V+E+G G GN+T Sbjct: 14 DRQEQRGELKRAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVK 73 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122 LL A+KV+ E D + L P ++L+++ D LK D F + Sbjct: 74 LLE-KAKKVVACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T Sbjct: 127 ANLPYQISSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + + + F P PKV S+V+ P P P + + + F ++ KTL + K Sbjct: 184 RVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243 Query: 243 RLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278 + LL + ++ + E+ SI D +I ILT+ Sbjct: 244 SSAVQQLLEKNYRIHCSVQNTVIPEDFSIAD--KIQQILTN 282 >gi|324517882|gb|ADY46945.1| Dimethyladenosine transferase 1 [Ascaris suum] Length = 362 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 147/300 (49%), Gaps = 25/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +L+ + YK+ K+ + QNFL+D+N+ +KI ++G +G V+EIG GPG +T+ + Sbjct: 10 PLPALRDFIHMYKLNAKRILSQNFLMDMNLTRKIVRAAGIEEGDRVVEIGPGPGGITRAI 69 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----------N 114 L G ++ VIE D++F P L+ ++ +RL I DALK D + + Sbjct: 70 LEAGCERLDVIEIDKRFIPPLQHLAEASGSRLHIHHADALKTDIGAIWQANATEGTSWDD 129 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSP 169 + ++ NLP++I + L+ ++ W LTL FQ EV RI +S Sbjct: 130 APPRLHVVGNLPFHIASPLIIKYLREMHTRKSAWSYGRVPLTLTFQMEVARRICGPIDSE 189 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228 R+S+++ + ++ ++F+I F P PK+ V+ FIP + P I E ++KI + Sbjct: 190 VRARISIMSTFVSEPKILFEIPGSCFVPKPKINVGVVRFIPRIEPLIKSAFEVVEKICRH 249 Query: 229 AFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 F R+K + + ++ L E LL I+ + + L +E F I + Sbjct: 250 IFHYRQKYVIKCVRTLYPESLAESLSHELLSVCRIDPSTISIKLGVEQFADICYAYEEQC 309 >gi|195440550|ref|XP_002068104.1| GK10486 [Drosophila willistoni] gi|194164189|gb|EDW79090.1| GK10486 [Drosophila willistoni] Length = 334 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 78/292 (26%), Positives = 142/292 (48%), Gaps = 19/292 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ YK+ K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 17 PLPTIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGTIDRRDIVLEVGPGPGGITRS 76 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIR 120 +L +++I++EKD +F +LK+ + +++I +D L+ + ++ + + + Sbjct: 77 ILRRQPQRLILVEKDPRFRETLDLLKECARPLDIQVDIYHEDILRFNMDQHISDTTQRLH 136 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP+ I TRLL NW + + +TL FQKEV ERI A S RLS Sbjct: 137 LIGNLPFAISTRLLINWYADLSNRRGAFRRQDTCMTLTFQKEVAERICAPLGSEQRCRLS 196 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 +++ T + F I F P P+V V+ IP P + ++++ + F R+ Sbjct: 197 IMSQIWTDPKLKFIIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFDLVERVMRHIFSMRQ 256 Query: 235 KTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 K R+ L L +A + +R LS+++ R+ + + Sbjct: 257 KYCRRGFSNLLPPELREEQTPELFRRADVVDTMRPFELSVDECVRLAEVYAE 308 >gi|166158346|ref|NP_001099878.2| probable dimethyladenosine transferase [Rattus norvegicus] gi|165971279|gb|AAI58730.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Rattus norvegicus] Length = 313 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 19/281 (6%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 ++ + ++ +GQ+ L + I+ I + + V+E+G G GN+T Sbjct: 14 DRQEQRGELKRAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVK 73 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122 LL A+KV+ E D + L P ++L+++ D LK D F + Sbjct: 74 LLE-KAKKVVACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T Sbjct: 127 ANLPYQISSPFVFKLL---LHRPFFRCAILMFQREFALRLAAKPGDKLYCRLSINTQLLA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + + + F P PKV S+V+ P P P + + + F ++ KTL + K Sbjct: 184 RVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243 Query: 243 RLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278 + LL + ++ + E+ SI D +I ILT+ Sbjct: 244 SSAVQQLLEKNYRIHCSVQNTVIPEDFSIAD--KIQQILTN 282 >gi|317052466|ref|YP_004113582.1| dimethyladenosine transferase [Desulfurispirillum indicum S5] gi|316947550|gb|ADU67026.1| dimethyladenosine transferase [Desulfurispirillum indicum S5] Length = 270 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 15/276 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ IL+ + ++ KK +GQNF+ D + +++I + SG TV+EIG G G +T++L Sbjct: 3 VRQILNTHGLMAKKSLGQNFICDESFVQRIVKQSGVGPDDTVLEIGPGLGVMTRVLGERS 62 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 AR VI +E D Q L+ S+ P + ++ DAL+ D+ R+IANLPYNI Sbjct: 63 AR-VIALEIDGQLLDYLRS-SAHLPENVTLVHTDALRYDWGTLPAEC---RVIANLPYNI 117 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM-MF 188 +++L + +S +++ Q+E+ R + + +G L++ + + Sbjct: 118 SSQILMAIVEHHQ---LVQSFSVMLQREMALRAMGESGTKDFGPLAIYLRLYYDLELSIS 174 Query: 189 DISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 I P VF+P+P V S+V+ +P +K+ + +F RRKTL+ + + Sbjct: 175 RIPPSVFYPAPGVESSVLQGRRLPQPRFPVGDFVRFQKLVRLSFSHRRKTLKNNYRGTTW 234 Query: 247 ENLLH----QAGIETNLRAENLSIEDFCRITNILTD 278 GI LRAE LS+E F + +L D Sbjct: 235 FETFMDQAPALGISPELRAEALSLEQFYLLYRLLED 270 >gi|158258883|dbj|BAF85412.1| unnamed protein product [Homo sapiens] Length = 313 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A++V+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKEVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|27151490|sp|Q95KJ0|DIMT1_MACFA RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|13874484|dbj|BAB46866.1| hypothetical protein [Macaca fascicularis] Length = 313 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L+ P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELRKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E+ R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQRELALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|307265678|ref|ZP_07547231.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919322|gb|EFN49543.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 273 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 137/264 (51%), Gaps = 16/264 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQNF+ D NIL KI +SG V+EIG G G LT+ L + +KVI E D++ + Sbjct: 12 WGQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKM-VKKVISFEIDRELYE 70 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141 K+ + + N + I + D +KVD K N P +++ANLPY I + ++ + Sbjct: 71 ATKEKLNIYNNVIIINE-DIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 F + +T+L QKEV ERI A + YG L+V ++ K +F++ P VF P PKV Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKV 185 Query: 202 TSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254 S+++ + + + AFG+RRK L +LK LG + ++ +A Sbjct: 186 DSSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 + R E LSIE+F + N++ D Sbjct: 246 LSPQRRGETLSIEEFAALANVIYD 269 >gi|159462946|ref|XP_001689703.1| dimethyladenosine transferase [Chlamydomonas reinhardtii] gi|158283691|gb|EDP09441.1| dimethyladenosine transferase [Chlamydomonas reinhardtii] Length = 352 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 12/236 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +++ I + +G V+EIG G GNLT LL A+KVI +E Sbjct: 38 GLEFHKSKGQHILRNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAVE 96 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L+ P N L+II D ++V+ F +AN+PYNI + L F Sbjct: 97 LDPRMVLELQRRVQGTPYANNLQIIHGDFMRVELPYF------DLCVANIPYNISSPLTF 150 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ P + + +++Q E R+ A+ Y RL+V T + + + + + F Sbjct: 151 KLLAHR---PAFRAAVIMYQHEFAMRLVAKAGDNLYSRLAVNTQLLARVSHLLKVGKNNF 207 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S+V+ P P P + + F ++ KTL K+ L Sbjct: 208 RPPPKVDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTLGAIFKQTNTLQALE 263 >gi|257057212|ref|YP_003135044.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017] gi|256587084|gb|ACU98217.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017] Length = 284 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 16/278 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K +GQNF+ D N +++I +G G V+E+G G G+LT LL Sbjct: 10 AAEIRRLAAALGLRPTKKLGQNFVHDANTVRRIVGLAGVEPGEAVVEVGPGLGSLTLGLL 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L D ++H RL +I+ DAL++ ++ P ++ Sbjct: 70 HAGAH-VAAVEIDPVLAARLPDTVAEHAPDTVERLTVIERDALRLRADEL--PIEPTALV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + ++ P ++ Q EV +R++A+ S YG SV W Sbjct: 127 ANLPYNVAVPVVLHLLAE---LPSLRRALVMVQTEVADRMSARPGSRVYGVPSVKLAWYG 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 +A + + VF+P P V S+++ F P +++ + AF +RRKTLR +L Sbjct: 184 RARKVASVPRSVFWPVPNVDSSLVAFE-RATPPDADRDTVFALVDAAFAQRRKTLRAALA 242 Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 G LL +AG++ R E L++E F I Sbjct: 243 PWAGSADRAAELLSRAGVDPATRGERLTVEQFAAIARA 280 >gi|114600099|ref|XP_001136488.1| PREDICTED: dimethyladenosine transferase isoform 2 [Pan troglodytes] Length = 300 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|332665266|ref|YP_004448054.1| ribosomal RNA small subunit methyltransferase A [Haliscomenobacter hydrossis DSM 1100] gi|332334080|gb|AEE51181.1| Ribosomal RNA small subunit methyltransferase A [Haliscomenobacter hydrossis DSM 1100] Length = 260 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 10/263 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + KK GQ+FL I ++IA S + V+E+G G G LT+ LL A + V+ Sbjct: 1 MKAKKSFGQHFLNREEIAERIANSLTTNTELAPLVLEVGPGKGMLTKYLLAKTA-SLKVV 59 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D L+ Q + II D LKVD FN +I N PYNI ++++F+ Sbjct: 60 EADVDMVNYLQKYYPQLQDN--IISGDFLKVDLAAVFN-GQAFGLIGNFPYNISSQIVFH 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + P+ + +FQKE+ +RI A+ YG +SVLT + +F++ F Sbjct: 117 MIK---FRPYVPEMVGMFQKEMADRIIAKPGGKDYGVISVLTQAYYEGKTLFNVDKSCFS 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S VI + N C E+L + + + +F +RRK LR +LK L E++ + Sbjct: 174 PPPKVQSAVIRLLRKENQDLGCDEALFRQVVKTSFNQRRKMLRNTLKPLFAESVEILEDV 233 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 R E L++ DF IT L + Sbjct: 234 FYQQRPEQLALNDFIEITRKLQN 256 >gi|114051271|ref|NP_001039501.1| probable dimethyladenosine transferase [Bos taurus] gi|114149276|sp|Q2KHT8|DIMT1_BOVIN RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=DIM1 dimethyladenosine transferase 1-like; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|86438246|gb|AAI12887.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Bos taurus] gi|296475843|gb|DAA17958.1| probable dimethyladenosine transferase [Bos taurus] Length = 313 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KVI E Sbjct: 27 GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPLASKLQVMVGDVLKADLPFF------DACVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282 >gi|326934876|ref|XP_003213509.1| PREDICTED: probable dimethyladenosine transferase-like [Meleagris gallopavo] Length = 385 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 40/277 (14%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E + V+E+G G GNLT +L +KVI E D + Sbjct: 107 GQHILKNPLVVNSIIEKAALRRTDIVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 165 Query: 86 LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ N+LEI D LK D F +ANLPY I + +F + Sbjct: 166 LQKRVQGTCLANKLEIKVGDVLKTDLPFF------DACVANLPYQISSPFVFKLL---LH 216 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E R+ A+ S Y RLS+ T + + + + F P PKV S Sbjct: 217 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 276 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----------LHQA 253 +V+ P P P + + + AF ++ KTL + K E L LH A Sbjct: 277 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDHNYRIHCSLHNA 336 Query: 254 GIETN------------------LRAENLSIEDFCRI 272 I N RA ++ I+DF R+ Sbjct: 337 EIPENFKISEKIQTVLKDTGYSEKRARSMDIDDFIRL 373 >gi|184201384|ref|YP_001855591.1| dimethyladenosine transferase [Kocuria rhizophila DC2201] gi|183581614|dbj|BAG30085.1| dimethyladenosine transferase [Kocuria rhizophila DC2201] Length = 396 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 16/279 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + I P K +GQNF++D N +++I ++ V+E+G + L Sbjct: 13 PAEIRELAETAGIRPTKTLGQNFVIDPNTIRRIVAAAHLAPEEHVLEVGP-GLGSLTLGL 71 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 + V +E D L + ++ RL +++ DA +V + + P ++ Sbjct: 72 LAASSAVTAVEIDPPLARQLPETVARFFPDAAPRLSVVEADAARV--RELPGGAEPTALV 129 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P ++ Q EV +R+ A S YG SV W Sbjct: 130 ANLPYNVAVPVLLHILET---FPSIRHGLVMVQDEVADRLAAGPGSRVYGVPSVKASWYA 186 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK+ S ++ P L + AF +RRKTLR +L Sbjct: 187 EVRKAGVIGKNVFWPAPKIASGLVRLERREPPAEERLRVPTFAVVDAAFAQRRKTLRAAL 246 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E +L AG++ R E L + DF RI Sbjct: 247 SGWAGSGARAEEILRAAGVDPAERGEKLGVADFARIAEA 285 >gi|295100315|emb|CBK97860.1| dimethyladenosine transferase [Faecalibacterium prausnitzii L2-6] Length = 283 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 16/288 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++T+ Y K GQNF+++ + KI ++SG V+EIG G G Sbjct: 1 MPELTDLSVIRTLCEKYNFALSKGFGQNFIINPGLPPKIVDASGVDKSWGVLEIGPGIGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117 LT+ L A KV+ IE D++ P+L + + N +++ D LK D Sbjct: 61 LTKELARRAA-KVVSIEVDERLPPLLAETMAGVEN-FKLVLQDVLKADLRALIEEEFPGM 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P+ + ANLPY I + ++ + +LT++ QKE +R+ A + +S Sbjct: 119 PVAVCANLPYYITSPIVMKLLGDRLP---IRNLTVMVQKEAADRLAAAPGTRASSAISCA 175 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + + +MF +P F+P+PKVTS V+ P + + + AFG+RRK Sbjct: 176 VSYYATSKLMFTAAPGSFYPAPKVTSAVVRMDIRTTPAVQVEDEDGYFALIRAAFGQRRK 235 Query: 236 TLRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 T + L + + AG + +R E L++EDF + L Sbjct: 236 TAANAIASGLGLPKDKVIAAIEAAGFDARIRPEALTLEDFAAVQRELK 283 >gi|312130023|ref|YP_003997363.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132] gi|311906569|gb|ADQ17010.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132] Length = 255 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 12/264 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK++GQ+FL DL+ K+I E V+EIG G G LTQ L + ++E Sbjct: 3 KVKAKKHLGQHFLKDLSAAKRITEL--YQGPKKVLEIGPGMGVLTQYLRERTDLDLYLVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++ L+ +L D L+++ + N II N PYNI +++ F Sbjct: 61 IDKESVAYLQHQYGYTDEKL--FDADFLQMNLSERLNTEGDFGIIGNFPYNISSQIFFKV 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + + QKEVG R+ ++ + YG LSVL F + P F P Sbjct: 119 LDYRDQ---VKEVVGMVQKEVGVRLASKPGNKDYGILSVLLQAFYDIEYSFTVPPGAFDP 175 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S VI + + + C + K + + AF +RRK L +LK + + A Sbjct: 176 PPKVDSGVIRLVRNMDKKLDCDYKKFKLVVKTAFNQRRKMLSNALKPVSAQQEFPYA--- 232 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 N RAE L F IT +L NQ Sbjct: 233 -NKRAEQLDYLQFAEITRVLFPNQ 255 >gi|118792585|ref|XP_320403.3| AGAP012129-PA [Anopheles gambiae str. PEST] gi|116116968|gb|EAA00207.3| AGAP012129-PA [Anopheles gambiae str. PEST] Length = 424 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 28/298 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ ++ Y++ K + QNFL+D + KI ++G++ V+E+G GPG +T+ + Sbjct: 104 PLPTIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGNIRDHYVLEVGPGPGGITRSI 163 Query: 66 LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----- 117 + R ++V+EKD++F P +L +++ R++I+Q D L + F Sbjct: 164 IRQNPRHLVVVEKDRRFMPTMEMLAEVAQPF-MRMDIVQGDILDYRVAEAFPDCPPHDWM 222 Query: 118 -----PIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKN 167 P+ +I NLP+ I TRLL NW + W SLTL FQKEV ERI A Sbjct: 223 DRKRAPVHLIGNLPFAISTRLLINWLRDMSLRTGAWSYGRASLTLTFQKEVAERIVAPIL 282 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKIT 226 S RLSV+ + + F IS F P P+V V+ +P P+ ++++K+ Sbjct: 283 SDQRCRLSVMNQIWSTPELRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVV 342 Query: 227 QEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + F R+K R+ + L E +A ++ R+ LS+ + RI Sbjct: 343 RHIFSMRQKYCRRGVANLYPPAVREELTEQTFKRADVDPLARSFQLSVAECLRIVEAY 400 >gi|255636797|gb|ACU18732.1| unknown [Glycine max] Length = 308 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 115/253 (45%), Gaps = 14/253 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I K GQ+ L + ++ I E +G ++EIG G GNLT+ LL G +KVI IE Sbjct: 25 GISFHKSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAG-KKVIAIE 83 Query: 78 KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L+ H NRL +IQ D LK + F +AN+PY I + L F Sbjct: 84 IDPRMVLELQRRFQGTPHSNRLTVIQGDVLKTELPYF------DICVANIPYQISSPLTF 137 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P + + ++FQ+E R+ AQ Y RL+V T + + + + F Sbjct: 138 KLLKHE---PAFRAAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFHLLKVGRNNF 194 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S+V+ P I + + F ++ KTL ++ +LL + Sbjct: 195 RPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSVISLLEKN-- 252 Query: 256 ETNLRAENLSIED 268 +RA L ED Sbjct: 253 YRTVRALELGQED 265 >gi|170058055|ref|XP_001864755.1| dimethyladenosine transferase [Culex quinquefasciatus] gi|167877296|gb|EDS40679.1| dimethyladenosine transferase [Culex quinquefasciatus] Length = 306 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + T ++ I+ K GQ+ L + I+ + E + V+EIG G GN+T + Sbjct: 8 KKTRVHTEVAKQGIVFNKDFGQHILKNPLIVTSMLEKAALRPTDVVLEIGPGTGNMTVKI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L +KVI E D + L+ P ++L+I+ D LK D F +A Sbjct: 68 LE-KVKKVIACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLPFF------DCCVA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + +F + PF+ L+FQ E +R+ A+ Y RLSV T + Sbjct: 121 NMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ I + F P PKV S+V+ P P P +T+ AF ++ KTL + K+ Sbjct: 178 VDMLMKIGKNNFRPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLSAAFKQ 237 Query: 244 LGGENLLHQ 252 L Q Sbjct: 238 TTVLTALEQ 246 >gi|258406021|ref|YP_003198763.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692] gi|257798248|gb|ACV69185.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692] Length = 272 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 15/261 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K+ +GQNFL+D N ++ I + + G V EIG G G LT+ +L G +V V+EKD Sbjct: 19 RAKRSLGQNFLVDPNTIRAIIGALRASPGDRVFEIGPGRGALTEEMLGQG-LEVSVLEKD 77 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L D Q L +I DA++ +E I R+I NLPYN+ + ++++ ++ Sbjct: 78 RVLARYLADRHPQ----LRVIVGDAMQFAWE---GIRGDWRVIGNLPYNVASPIIWDLVA 130 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P + QKEV +R+ A S YG LSV + +VF P P Sbjct: 131 RT---PAARRMVFTVQKEVAQRLCAAPGSRAYGALSVWVQTFAGVHYERTLGGNVFRPRP 187 Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ P + E+L ++ + F KRRK L LK + E L G+ Sbjct: 188 KVDSAVVSLDPAGRSLSQAQQEALGQVLRVCFQKRRKQLGSILKSVWSPELEAWLEAQGL 247 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + +R E LS E F + ++ Sbjct: 248 DRRVRPEALSPEAFLELARLV 268 >gi|115935835|ref|XP_001176419.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 306 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 40/297 (13%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ +GQ+ L + +++ I + TV+E+G G GN+T + Sbjct: 8 KKSRVHDQVYKQGILFNTGIGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KV+ E D + L+ P +L++I D LK D FF++ +A Sbjct: 68 LD-KAKKVVACELDPRLVAELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + +F + PF+ L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + F P PKV S+V+ P P P + + + AF ++ KTL + + Sbjct: 178 VDHLMKVGKNNFKPPPKVESSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRN 237 Query: 244 LGGENLLHQA--------------GIE--------------TNLRAENLSIEDFCRI 272 G +L + ++ RA + I+DF ++ Sbjct: 238 KGVVEMLEKNYRVHCSVKNIAIPDNLDMKEKVVSVLEKIEFEGKRARTMDIDDFLKL 294 >gi|22298201|ref|NP_681448.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1] gi|27151563|sp|P59157|RSMA_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|22294380|dbj|BAC08210.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1] Length = 265 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 14/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I +K GQ++L IL +I ++ G V+EIG G G LT+ LL GA +V+ +E Sbjct: 2 IRARKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGA-EVVAVEL 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ R ++I+ D L++D +++AN+PYNI LL + + Sbjct: 61 DRDLCGQLRRQFD--SERFQLIEGDILRLDLAPL----GCNKVVANIPYNITGPLLGHLL 114 Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P P +E L LL QKE+G+R+ A S YG LSV + + + P F Sbjct: 115 GSIARPRRPAFERLILLVQKEIGDRLMASPGSKAYGALSVRVQFLATCEKVCAVPPRAFQ 174 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLH 251 P PKV S V+ PH P + L+ + ++ F RRK L +LK L L Sbjct: 175 PPPKVDSVVVCLRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQVRQALL 234 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 Q G + N RAE LS+ED+ ++ +L Q Sbjct: 235 QLGRDANSRAEALSLEDWLALSEVLRQLQ 263 >gi|156542231|ref|XP_001600750.1| PREDICTED: similar to ENSANGP00000016944 [Nasonia vitripennis] Length = 306 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 40/291 (13%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 I+ K GQ+ L + I++ + E + V+E+G G GN+T +L ++KVI Sbjct: 18 RQGIVFNKDFGQHILKNPLIIQSMVEKAALRPTDVVLEVGPGTGNMTVKMLER-SKKVIA 76 Query: 76 IEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D + L+ P ++L+I+ D LK+D FF++ +AN+PY I + L Sbjct: 77 CEIDTRMVAELQKRVMGTPIQSKLQIMVGDVLKMDLP-FFDLC-----VANVPYQISSPL 130 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + P + L+FQ+E ER+ A+ Y RLSV T + M+ + + Sbjct: 131 VFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKDYCRLSVNTQLLARVDMLMKVGKN 187 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S V+ P P P + +T+ AF ++ KTL + K+ ++ + Sbjct: 188 NFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQSSVIAMMEKN 247 Query: 254 ----------------GIETN------------LRAENLSIEDFCRITNIL 276 I+ LRA + I+DF ++ + Sbjct: 248 YKIHCSLHNIPLPDNFDIKEKINAILTNNSINELRARTMDIDDFIKVLQVF 298 >gi|318060949|ref|ZP_07979670.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Streptomyces sp. SA3_actG] gi|318078811|ref|ZP_07986143.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Streptomyces sp. SA3_actF] gi|333026402|ref|ZP_08454466.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071] gi|332746254|gb|EGJ76695.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071] Length = 292 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 21/288 (7%) Query: 1 MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + ++ + + + P K GQNF++D N +++I ++ + TV+E+G G Sbjct: 1 MTRTDPLLGPADIRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 G+LT LL + A V +E D + + ++ DAL+V + Sbjct: 61 LGSLTLALLEVAAD-VTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---REL 116 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +P ++ANLPYN+ +L + + P E ++ Q EV +R+ A S YG Sbjct: 117 PGPAPTALVANLPYNVAVPVLLHMLE---HFPSVERTLVMVQAEVADRLAAPPGSRVYGV 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFG 231 SV W I VF+P+P V S ++ + P+ + + AF Sbjct: 174 PSVKAAWYAHVKRAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFA 233 Query: 232 KRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 +RRK LR + E L AG+ R E+L++E+F RI Sbjct: 234 QRRKGLRAALAGWAGSAAAAEEALRAAGVSPQARGESLTVEEFARIAE 281 >gi|303327382|ref|ZP_07357823.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3] gi|302862322|gb|EFL85255.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3] Length = 274 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 134/266 (50%), Gaps = 11/266 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQ+FL I +IA V+EIG GPG LT+ L ++++EKD Sbjct: 13 RAKKSLGQHFLRREEICDRIAALLLPQAEDRVLEIGPGPGALTRALEAAPHACLLLLEKD 72 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + + Q R + + DAL+ D+ + + P ++I NLPYN+ + L+++ +S Sbjct: 73 RHWAA---ERQRQAAPRTQAVLTDALRFDWRRI-SPEHPWKVIGNLPYNVASPLIWDIVS 128 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + QKEVG+R+ A + HYG LSV + + F + P F P P Sbjct: 129 RAE---GLKRAVFMVQKEVGQRLAAAPGNGHYGALSVWVQSYARPRLEFVVGPGAFSPPP 185 Query: 200 KVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ F P P ++L ++ + F +RRK L +R G E L QAG+ Sbjct: 186 KVDSAVLSFEPLPPEAQPAHPKALARLLRICFQQRRKQLGGIFRRAGLPQMERALDQAGL 245 Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281 +LR E LS +DF R+++ L N D Sbjct: 246 APSLRPEALSTDDFQRLSSFLALNLD 271 >gi|302821163|ref|XP_002992246.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii] gi|300140013|gb|EFJ06743.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii] Length = 312 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 12/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I K GQ+ L + I++ I + +G V+EIG G GNLT LL + A+KVI +E Sbjct: 21 GIQFYKSRGQHILKNPLIVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVE 79 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L+ P N L+IIQ D LK + F +AN+PY I + L F Sbjct: 80 LDPRMVLELQRRVQGTPQANHLQIIQGDVLKTELPYF------DVCVANIPYQISSPLTF 133 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 +S P + + ++FQKE R+ A+ P Y RLSV T + + + + F Sbjct: 134 KLLSHR---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNF 190 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ P P + + + F ++ KTL ++ L+ + Sbjct: 191 RPPPKVDSSVVRIEPRNPLPPVSFKEWDGLVRLCFNRKNKTLGSIFRQKNVVQLVER 247 >gi|317969764|ref|ZP_07971154.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Synechococcus sp. CB0205] Length = 278 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 76/264 (28%), Positives = 121/264 (45%), Gaps = 16/264 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ++L D ++L +I +++ TV+E+G G G LT+ LL AR V +E Sbjct: 6 HRARKRFGQHWLKDQSVLDRILQAAELTAADTVLEVGPGRGALTERLLESSARAVCAVEL 65 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L++ +P R + + D L V+ + ++AN+PYNI LL + Sbjct: 66 DRDLVSGLQERFGANP-RFSLTEGDVLAVELPEA------TAVVANIPYNITGPLLERLV 118 Query: 139 SADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P + L LL Q+EVGERI A+ S Y LSV + + + + P F Sbjct: 119 GRLDRPALQPYRRLVLLVQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCPVPPRCFQ 178 Query: 197 PSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250 P PKV S V+ P P ++++ + + F RRK LR +L L L Sbjct: 179 PPPKVMSEVVALDPLPLEQRLDPALAKTVEMLLRRCFAARRKMLRNTLSGLVEAEQLQSL 238 Query: 251 -HQAGIETNLRAENLSIEDFCRIT 273 A I R + ++ E + + Sbjct: 239 TEAAEIGLQQRPQEVAPERWVSLA 262 >gi|160903048|ref|YP_001568629.1| dimethyladenosine transferase [Petrotoga mobilis SJ95] gi|160360692|gb|ABX32306.1| dimethyladenosine transferase [Petrotoga mobilis SJ95] Length = 275 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 10/268 (3%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 L Y I KK +GQNFL + + +I + S + +IEIG G G LT+ + A+ Sbjct: 5 EWLKKYDIRLKKGLGQNFLSNSTVSHEIVKKSEIDENDVIIEIGTGNGILTEEIAK-KAK 63 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KVI E D++ P+L++ N +EI +D L D KF +I ++ IAN+PY I + Sbjct: 64 KVITFEIDERLKPLLEERFEGSKN-VEIHFEDFLNTDLSKFKDI-PKLKYIANIPYYISS 121 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++L P +E +FQKE G+R+ A+ Y LS+ + D+S Sbjct: 122 KILEKIFEE---SPKFEYAIFMFQKEFGQRLMAKSK-KSYSPLSIFVQTYCTVERIMDVS 177 Query: 192 PHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248 + F P PKV S ++ F P + + K F KRRKT++ +LK + E Sbjct: 178 KNNFIPIPKVDSVILKFNPVYKYVEEIDPKDFMKFVHICFSKRRKTIKNNLKEIIPDTEK 237 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 L + I+ + R E++ +E + ++ L Sbjct: 238 YLTEVQIDPSSRPEDIPLETYIQLYKKL 265 >gi|256420284|ref|YP_003120937.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588] gi|256035192|gb|ACU58736.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588] Length = 249 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 117/253 (46%), Gaps = 13/253 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ+FL D NI +KI E+ G ++E+G G G +T+ LL + +E D + Sbjct: 5 KKSLGQHFLKDENICRKIVEALPVNPGQQIVEVGPGAGAITKYLLQIPDVHFKAVELDTE 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + II + L +I N PYNI ++++F + Sbjct: 65 KVQYLEKTYPAIQGK--IINESILDTPVP----YQGEFNLIGNFPYNISSQIMFRVLE-- 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 W S+ +FQKEV RI A K YG LSVLT K +F++ + F P PKV Sbjct: 117 -WRQQVPSVVGMFQKEVALRIAATKG-KEYGILSVLTQAFYKVEYLFEVHENCFNPPPKV 174 Query: 202 TSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 S VI + + AFG+RRK LR LK L + +L + N R Sbjct: 175 KSAVIRLDRLETSYDIASERKFFVLVKTAFGQRRKQLRNPLKGLFAKEVLQDS--IFNKR 232 Query: 261 AENLSIEDFCRIT 273 AE LS+ DF ++ Sbjct: 233 AEELSVADFAALS 245 >gi|289739481|gb|ADD18488.1| mitochondrial transcription factor [Glossina morsitans morsitans] Length = 334 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +L+ I+ Y + K + QNFL+D + KI + G V+E+G GPG +T+ Sbjct: 17 PLPTLRDIVKLYNLRAVKQLSQNFLMDERLTDKIVKQCGRIDSKDVVLEVGPGPGGITRS 76 Query: 65 LLTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFE-KFFNISSPIR 120 ++ + ++V+EKD +F P +L++ + +++I DD L + E +I+ + Sbjct: 77 IIRREPKHIVVVEKDARFLPTLELLRECVAPLNIQMQIFVDDILTFNIENHLPDITQRLH 136 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP++I TRLL NW+ + +TL FQKEV ERI A RLS Sbjct: 137 LIGNLPFSISTRLLINWLEDVSLRRGAFRRHDTCMTLTFQKEVAERICAPFGHEQRCRLS 196 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ + F I F P P+V V+ +P P ++K+ + F R+ Sbjct: 197 VMSQIWTQPFLKFVIPGTAFVPKPEVDVGVVKLMPLKEPKTTLDFRLVEKVVRHIFNMRQ 256 Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 K R+ L + L +A +E LR LS+++ R+ ++ Sbjct: 257 KYCRRGFGTLFPPDQRESVTFELFKEADVEDTLRPFQLSVDECLRLATAYSN 308 >gi|291235880|ref|XP_002737862.1| PREDICTED: Probable dimethyladenosine transferase-like [Saccoglossus kowalevskii] Length = 305 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 19/272 (6%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 + K+ +GQ+ L + ++ I E + + +E+G G GN+T LL +KV+ Sbjct: 17 QQGVQFKRDLGQHILKNPLVVDGIIEKAALRNTDVALEVGPGTGNMTVKLLD-KVKKVVA 75 Query: 76 IEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D + ++ P+ +L++I D LK D FF++ +ANLPY I + Sbjct: 76 CELDPRLAAEVQKRVQGTPSQTKLQLIIGDVLKSDLP-FFDVC-----VANLPYQISSPF 129 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + PF+ L+FQ+E +R+ A+ Y RLS+ T + ++ + + Sbjct: 130 VFKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDLVMKVGKN 186 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S+V+ P P P + + + AF ++ KTL + K +L + Sbjct: 187 NFRPPPKVESSVVRLEPRNPPPPINFQEWDGLVRIAFTRKNKTLSAAFKHNSVLEMLEKN 246 Query: 254 -GIETNLR----AENLSIEDFCRITNILTDNQ 280 I +++ A + SI+D ++ IL DN+ Sbjct: 247 YRIHCSVKNITVATDFSIKD--KLEKILLDNE 276 >gi|254384979|ref|ZP_05000314.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces sp. Mg1] gi|194343859|gb|EDX24825.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces sp. Mg1] Length = 303 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 124/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 22 PADIRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 81 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L + Q +R ++ DA+ V +P ++ Sbjct: 82 E-AADRVTAVEIDDILAAALPATIEARMPQRKDRFALVHSDAMLVTE---LPGPAPTALV 137 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 138 ANLPYNVAVPVLLTMLDR---FPSIERTLVMVQAEVADRLAAEPGNKVYGVPSVKANWYA 194 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238 I VF+P+P V S ++ + PI + + AF +RRKTLR Sbjct: 195 HVKRAGSIGRKVFWPAPNVDSGLVSLVRRAEPIKTSASKAEVFAVVDAAFAQRRKTLRAA 254 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + G E L AG+ R E+L++E+F I Sbjct: 255 LAGWAGSAAGAEAALVAAGVSPQARGESLTVEEFAAIAE 293 >gi|254455962|ref|ZP_05069391.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. HTCC7211] gi|207082964|gb|EDZ60390.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. HTCC7211] Length = 261 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 149/262 (56%), Gaps = 9/262 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK +GQNFL+D NIL+KI T++E+G G GNLT +L +K+ V+EK Sbjct: 2 IKAKKSLGQNFLVDRNILEKITNIIQIT-DETILEVGPGTGNLTSFILKKKPKKIFVVEK 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L++ ++L II DD LK++ F S + + NLPYNI T +L WI Sbjct: 61 DEKLANHLEETFK---DQLTIINDDILKINESSLFE--SKVTVFGNLPYNISTEILSKWI 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + ++ +L L+FQKEV +RI A+ ++ +YGRLS+++ W+ + DI P F P Sbjct: 116 TNSSKDLWFNNLILMFQKEVADRIIAKFDTSNYGRLSIISNWKLNVEKICDIKPDCFSPK 175 Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGI 255 PK+ S+++ F P + ++L+K+T+ F RRK +++ +L G + +L + I Sbjct: 176 PKIDSSLLFFSPKKDFFKIKNPKNLEKVTRVFFNHRRKMIKKPFNQLFNGNQKVLDELNI 235 Query: 256 ETNLRAENLSIEDFCRITNILT 277 NLR +NL + ++T Sbjct: 236 NLNLRPQNLDFNTYYKLTEAYE 257 >gi|213511764|ref|NP_001135031.1| Probable dimethyladenosine transferase [Salmo salar] gi|209738164|gb|ACI69951.1| Probable dimethyladenosine transferase [Salmo salar] Length = 306 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 12/241 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + ++ +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV Sbjct: 16 VKNQGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D + L+ P +L+I+ D LK + FF++ +ANLPY I + Sbjct: 75 VACELDGRLVAELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL K E LL Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVERLLE 245 Query: 252 Q 252 + Sbjct: 246 K 246 >gi|156393635|ref|XP_001636433.1| predicted protein [Nematostella vectensis] gi|156223536|gb|EDO44370.1| predicted protein [Nematostella vectensis] Length = 308 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 74/294 (25%), Positives = 122/294 (41%), Gaps = 40/294 (13%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 + + GQ+ L + ++ + + +G TV+EIG G GNLT LL ++KVI Sbjct: 20 KQGLRFQTEHGQHILKNPLVITSLVDKAGLRSTDTVLEIGPGTGNLTVKLLEQ-SKKVIA 78 Query: 76 IEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D + L+ P ++L ++ D LK D FF++ +ANLPY I + Sbjct: 79 CELDPRMVAELQKRVQGTPLQSKLSVMVGDVLKTDLP-FFDVC-----VANLPYQISSPF 132 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + PF+ L+FQ+E +R+ A+ Y RLS+ T + + + + Sbjct: 133 VFKLL---LHRPFFRCAVLMFQREFAQRLIAKPGDKLYCRLSINTQLLARVDHIMKVGKN 189 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ- 252 F P PKV S+V+ P P P + + + AF ++ KTL +L + Sbjct: 190 NFRPPPKVESSVVRIEPKNPPPPVNFKEWDGLVRIAFVRKNKTLSACFNSRPVLEVLEKN 249 Query: 253 -------AGI--------------------ETNLRAENLSIEDFCRITNILTDN 279 GI RA + I+DF + + N Sbjct: 250 YKIHCSLNGIMVDSDFDMKEKIQQILSESENDKKRARTMDIDDFLALLTLFNSN 303 >gi|255535076|ref|YP_003095447.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10] gi|255341272|gb|ACU07385.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 91/254 (35%), Positives = 123/254 (48%), Gaps = 10/254 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK++GQ+FL+D NI KKI +S V+E+G G G LT+ LL +V V E Sbjct: 3 VKAKKHLGQHFLIDENIAKKIVDSLSYSQYTQVLEVGPGMGVLTKYLLE-KETEVFVAEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK+ + R DD LK+D + F + +I N PYNI +++LF I Sbjct: 62 DRDSVAYLKNHFPKLEARH--FSDDFLKIDIAESF--GDQVAVIGNFPYNISSQILFKII 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + +FQKEV ER A + YG LSVL T +F + +VF P Sbjct: 118 DFYDRVP---EMVGMFQKEVAERTAAVPRTKDYGILSVLVQALYDVTYLFTVHENVFNPP 174 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S VI + E L KI + FG+RRK L SLK L + Sbjct: 175 PKVKSGVIRLTRNPKEGLAGNEVLFKKIVKAGFGQRRKKLSNSLKVLEIPEAMQNHPF-L 233 Query: 258 NLRAENLSIEDFCR 271 RAE LS++DF Sbjct: 234 EKRAEELSVQDFIS 247 >gi|158521647|ref|YP_001529517.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3] gi|226729778|sp|A9A0E0|RSMA_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158510473|gb|ABW67440.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3] Length = 289 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 15/280 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S +TILS + I PKK +GQNFL D + I G V+E+G G G LT Sbjct: 3 SPRTILSGHDIAPKKSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALTIP-AAG 61 Query: 69 GARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKF-FNISSPIRIIANLP 126 A V IE D + LK+ + + ++ D +K D + + ++ NLP Sbjct: 62 QAAWVYAIETDGRLIEPLKETVRAAGLDNVTVLHRDIMKTDIREICREAGRKLVVLGNLP 121 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I +++L + + + L+FQ+E+ RI A + YGR+SV + + + Sbjct: 122 YYISSQILMDLVEKREA---VDRAVLMFQQELARRIAAPPGNREYGRISVALRYCAELST 178 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR- 243 + + P++FFP P V S V+ + P C + + AF RRKT++ +L Sbjct: 179 VARLKPNLFFPRPGVDSEVVRIVFRPWPGNRDCDEALFFAMIKSAFATRRKTIKNALSAG 238 Query: 244 ------LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E LL +A + +RAE L + DF I Sbjct: 239 MTKISPSAWEELLVRADVAPTVRAETLDVGDFLNICRHYK 278 >gi|67463766|pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase gi|67463767|pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 19/260 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 7 GQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVAE 65 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L P ++L+++ D LK D F +ANLPY I + +F + Sbjct: 66 LHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVFKLL---LH 116 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV S Sbjct: 117 RPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVES 176 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETN 258 +V+ P P P + + + F ++ KTL + K + LL + + Sbjct: 177 SVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNI 236 Query: 259 LRAENLSIEDFCRITNILTD 278 + E+ SI D +I ILT Sbjct: 237 IIPEDFSIAD--KIQQILTS 254 >gi|195379696|ref|XP_002048613.1| GJ14068 [Drosophila virilis] gi|194155771|gb|EDW70955.1| GJ14068 [Drosophila virilis] Length = 420 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 79/293 (26%), Positives = 144/293 (49%), Gaps = 19/293 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 S++ ++ YK+ K + QNFL+D + KI +++G V+E+G GPG +T+ Sbjct: 101 PLPSIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKAAGRIDPRDIVLEVGPGPGGITRS 160 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120 +L ++++++EKD +F +L++ + +++I +D L+ + E+ + + + Sbjct: 161 ILRRQPQRLMLVEKDARFTETLQLLRECARPLNVQVDIYHEDILRFNIEQHVPDTAQRLH 220 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP+ I TRLL NW + +TL FQKEV ERI A+ S RLS Sbjct: 221 LIGNLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAKLGSDQRCRLS 280 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 +++ T+ + F I F P P+V V+ IP P ++++ + F R+ Sbjct: 281 IMSQIWTEPLLKFIIPGKAFVPKPQVDVGVVKVIPLKKPKTQLPFSLVERVVRHIFSMRQ 340 Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R+ L L A ++ LR LS+++ R+ ++ D+ Sbjct: 341 KYCRRGYSTLLPPEGREETTHALFQLADVQDTLRPFELSVDECLRLADVYADH 393 >gi|320166025|gb|EFW42924.1| dimethyladenosine transferase [Capsaspora owczarzaki ATCC 30864] Length = 313 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 24/259 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I K GQ+ L + I+ I E +G + TV+EIG G GNLT LL ++KV+ E Sbjct: 28 IQFDKSFGQHILKNPLIVNGIIEKAGLRNTDTVLEIGPGTGNLTMKLLE-ASKKVVACEV 86 Query: 79 DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L+ + + LEI+ D LK D FF++ +AN+PY I + +F Sbjct: 87 DVRLVAELQKRVMGTPYQRNLEILVGDVLKADLP-FFDVC-----VANMPYQISSPFVFK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + PF+ L+FQKE +R+ A+ P Y RLSV T + + + + F Sbjct: 141 LL---LHRPFFRCAVLMFQKEFAQRLYAKPGDPAYCRLSVNTQLLARVDHLMKVGRNNFR 197 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S V+ P P P + + + F ++ KTL + +L + Sbjct: 198 PPPQVESAVVRIEPRNPPPPINFQEWDGLVRITFVRKNKTLHAAFMSSAVLEML-----D 252 Query: 257 TNLRAENLSIEDFCRITNI 275 N R FC + N Sbjct: 253 RNYR-------TFCALNNT 264 >gi|294790209|ref|ZP_06755367.1| dimethyladenosine transferase [Scardovia inopinata F0304] gi|294458106|gb|EFG26459.1| dimethyladenosine transferase [Scardovia inopinata F0304] Length = 376 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 37/304 (12%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + S P K GQNF++D ++KIA + T+IE+G G G+LT LL Sbjct: 44 AADIRRLASEINTKPTKKFGQNFVIDPGTVRKIASLATGGKPRTIIEVGPGLGSLTLALL 103 Query: 67 TLGARKVIVIEKDQQFF----PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 G+ V+ IE D + + + + ++ DAL+ ++ Sbjct: 104 ETGS-TVVSIEIDSLLAQKIPSTVHEFMPRADSHFHLVAKDALEFTPSDLEQALGGGKVS 162 Query: 123 A-----NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 NLPYN+ ++ + + P +S ++ QKEV ER+TA S YG SV Sbjct: 163 HLTLAANLPYNLAVPIILSLLDR---FPTLDSFVVMVQKEVAERLTAGPGSKIYGVPSVK 219 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 W +A + IS VF+P+P V S ++ F + + AF +RRKTL Sbjct: 220 LAWYGQAKLAGTISRTVFWPAPHVDSALVQFRRTGQRDQSLKKLTFSLIDSAFSQRRKTL 279 Query: 238 RQSLKR------------------------LGGENLLHQAGIETNLRAENLSIEDFCRIT 273 + +LK+ +L + +GI+ + R E LS++DF R+ Sbjct: 280 KAALKKPLRSLCPVSPETASKAKPLSNSSPTLYSDLFNNSGIDPSRRGETLSVDDFVRLA 339 Query: 274 NILT 277 ++ Sbjct: 340 QSIS 343 >gi|302800922|ref|XP_002982218.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii] gi|300150234|gb|EFJ16886.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii] Length = 312 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 12/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I K GQ+ L + +++ I + +G V+EIG G GNLT LL + A+KVI +E Sbjct: 21 GIQFYKSRGQHILKNPLVVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVE 79 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L+ P N L+IIQ D LK + F +AN+PY I + L F Sbjct: 80 LDPRMVLELQRRVQGTPQANHLQIIQGDVLKTELPYF------DVCVANIPYQISSPLTF 133 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 +S P + + ++FQKE R+ A+ P Y RLSV T + + + + F Sbjct: 134 KLLSHR---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNF 190 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ P P + + + F ++ KTL ++ L+ + Sbjct: 191 RPPPKVDSSVVRIEPRNPLPPVSFKEWDGLVRLCFNRKNKTLGSIFRQKNVVQLVER 247 >gi|148242414|ref|YP_001227571.1| dimethyladenosine transferase [Synechococcus sp. RCC307] gi|166221711|sp|A5GTK9|RSMA_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|147850724|emb|CAK28218.1| Dimethyladenosine transferase [Synechococcus sp. RCC307] Length = 274 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 11/262 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D ++L++I ++ V+E+G G G LT LL A V +E Sbjct: 5 GHHARKRFGQHWLKDESVLQRIVAAAALQPDDHVLEVGPGRGALTAQLLASPAASVQAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + P R ++ D L + P +++AN+PYNI LL Sbjct: 65 LDRDLVAGLQQRFAAEP-RFQLQSGDVLALPQLGD-GERRPTKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P P ++ L LL Q+EV RI+A+ + LSV + + P F Sbjct: 123 VGRLDRPVEPPYQRLVLLVQQEVARRISARAGQSSFSALSVRMQLLAHCRSVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR----LGGEN 248 P PKV S VI P P + ++ + + AF RRK +R +L +G E Sbjct: 183 QPPPKVQSEVISLDPLPADQRPPQAVAKQVEHLLRLAFSARRKMVRNTLASAAPAVGLEV 242 Query: 249 LLHQAGIETNLRAENLSIEDFC 270 L AG+ R + ++ + + Sbjct: 243 WLADAGLTPQQRPQEIAAQQWV 264 >gi|219849174|ref|YP_002463607.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485] gi|219543433|gb|ACL25171.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485] Length = 290 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 23/295 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ L + P + MGQNFLLD ++L I + + TVIE+G G G Sbjct: 1 MNPYLNPQRIRAALRALNLRPTRGMGQNFLLDGSVLATIVAEAALVPADTVIEVGPGLGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 LT LL A +VI +E D++ L S N L ++Q D L + + Sbjct: 61 LTWELLPR-AGRVICVELDRRLADRLAAEFSGRSN-LHLVQGDVLTIAPADLLARAAATP 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P +++AN+PY I LL +++ A P LL Q EV +RI A Y L+ Sbjct: 119 PYKLVANIPYAITAPLLRHFLEATPPPDL---SVLLVQWEVAQRICAGPG--DYSVLAHA 173 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235 + + +++ + FFP+P V S ++ L P + L ++ + F RK Sbjct: 174 IQFYAEPSIVAHVPASSFFPAPAVDSAILRLQRRLQPPVTVPDVNMLFRLIKAGFLHARK 233 Query: 236 TLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L +L R LH+ GI+ RAE +++ ++ + L+++ Sbjct: 234 QLGNALPGGLAALGVTIPREQIMTALHKIGIDPQRRAETVTLAEWANLLAALSES 288 >gi|225704090|gb|ACO07891.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss] Length = 306 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 12/241 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + ++ +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV Sbjct: 16 VKNQGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D + L+ P +L+I+ D LK + FF++ + NLPY I + Sbjct: 75 VACELDGRLVAELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VTNLPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL K E LL Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLE 245 Query: 252 Q 252 + Sbjct: 246 K 246 >gi|195016027|ref|XP_001984325.1| GH15074 [Drosophila grimshawi] gi|193897807|gb|EDV96673.1| GH15074 [Drosophila grimshawi] Length = 415 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 19/293 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ YK+ K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 101 PLPTIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRS 160 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120 +L +++I++EKD +F +L++ +S +++I +D L+ + EK + + + Sbjct: 161 ILRRQPQRLILVEKDARFTETLQLLRECASPLQMQVDIYHEDILRFNIEKHVPDTAQRLH 220 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP++I TRLL NW + +TL FQKEV ERI AQ S RLS Sbjct: 221 LIGNLPFSISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAQLGSEQRCRLS 280 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ + F I F P P+V V+ +P P ++++ + F R+ Sbjct: 281 VMSQIWTQPLLKFIIPGKAFVPKPQVDVGVVKVMPLKQPKTQLPFALVERVVRHIFSMRQ 340 Query: 235 KTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R+ L NL A ++ LR LS+ + R+ ++ ++ Sbjct: 341 KYCRRGFGTLLPPDGREEITHNLFQLADVQDTLRPFELSVAECLRLADVYAEH 393 >gi|194748282|ref|XP_001956577.1| GF25284 [Drosophila ananassae] gi|190623859|gb|EDV39383.1| GF25284 [Drosophila ananassae] Length = 330 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 19/293 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64 +++ ++ YK+ K + QNFL+D + KI +S+G V+E+G GPG +T+ Sbjct: 17 PLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHSDIVLEVGPGPGGITRS 76 Query: 65 LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120 +L +++I++EKD++F +L++ + +L+ DD L+ + E + + + Sbjct: 77 ILRRQPQRLILVEKDERFGETLQLLRECAKPLNIQLDTYYDDILRFNIEHHVPDTTQRLH 136 Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +I NLP+ I TRLL NW + +TL FQKEV ERI A RLS Sbjct: 137 LIGNLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAPVGGEQRCRLS 196 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234 V++ T+ M F I F P P+V V+ IP P ++++ + F R+ Sbjct: 197 VMSQIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFPLVERVVRHIFSMRQ 256 Query: 235 KTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R+ L +NL +A ++ LR+ LS+E R+ + +++ Sbjct: 257 KYCRRGYGTLFPQEGREEVTQNLFQRAEVQDTLRSFELSVEQCLRLAEVYSEH 309 >gi|282163396|ref|YP_003355781.1| probable dimethyladenosine transferase [Methanocella paludicola SANAE] gi|282155710|dbj|BAI60798.1| probable dimethyladenosine transferase [Methanocella paludicola SANAE] Length = 276 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 23/269 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P K Q+FL+DLNILKKI + V+EIG GPGNLT+ LL AR V IE Sbjct: 11 IAPDKRKDQHFLIDLNILKKIVAIADIHKDEDVLEIGTGPGNLTE-LLAQKARHVYTIEM 69 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D +L++ + + II+ +ALKV+F +F +++ANLPY+I + + F + Sbjct: 70 DPALVALLEEKFKG--SNVTIIKGNALKVEFPRF------DKVVANLPYSISSDVTFKLL 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + ++ L++Q+E +R+ A+ P Y RLSV ++ + P F P Sbjct: 122 KNN-----FKLGILMYQREFAQRMIARVGEPDYSRLSVDVQHFADVEILMKVPPQAFSPP 176 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR-------LGGENLL 250 P+V S V+ P +L + AF +RRK LR +L G + L+ Sbjct: 177 PEVESAVVRVTPRPAAYSVKDRALFMALVTAAFTQRRKRLRNALVNGAHIMGIHGMKALV 236 Query: 251 HQAGIET-NLRAENLSIEDFCRITNILTD 278 + + + RAE +S E++ + + L + Sbjct: 237 SRLPPDLMDKRAEEVSPEEYAALADRLYE 265 >gi|145590046|ref|YP_001156643.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048452|gb|ABP35079.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 258 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 15/264 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D ++ I + +IEIG G G LT+ L ++ ++E Sbjct: 2 HRARKRFGQNFLQDQGVIYSIVALINPSPDMHIIEIGPGLGALTRP-LLSSLDQLDLLEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134 D+ + ++ L++I+ DALK +F ++ +++ NLPYNI + LL Sbjct: 61 DRDLVAYWEK---ENLKGLKVIEGDALKFNFLEWAQNCDSKKGLCKVVGNLPYNISSPLL 117 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F+ +SA T + + Q EV ER+ A S + RLSV+ R ++ ++ P Sbjct: 118 FHLVSAATQ---IDEQVFMLQAEVVERMVAPAGSSDFSRLSVMLQARYDMELVLEVPPEA 174 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S V+ IP + + +L+++ AF +RRK LR +L+ L Sbjct: 175 FDPQPKVNSAVVRMIPRQDFSLTTKQWHALEQVVAAAFSQRRKMLRTNLQVFA--ERLKL 232 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 IE RA+++S++ + +L Sbjct: 233 TDIELKARAQDISVDRYIEWARVL 256 >gi|78184856|ref|YP_377291.1| dimethyladenosine transferase [Synechococcus sp. CC9902] gi|119365856|sp|Q3AXF3|RSMA_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78169150|gb|ABB26247.1| dimethyladenosine transferase [Synechococcus sp. CC9902] Length = 274 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 13/274 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D +L +I E++ V+E+G G G LT+ LL A ++ IE Sbjct: 5 GHTARKRFGQHWLRDARVLDQIVEAARLQQDDCVLEVGPGRGALTERLLASPAAQIHAIE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L D +R + + D L+ + +++AN+PYNI LL Sbjct: 65 LDRDLVRGLHDRFGS-ESRFSLREGDVLEAPLH-LVDGGFANKVVANIPYNITGPLLARL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I P P ++ L LL QKEV ERI A+ + LSV +++ + P F Sbjct: 123 IGRLDRPVEPTYDCLVLLLQKEVAERIRAKPGRSSFSALSVRMQLLADCSLVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S VI P +P L ++ + ++AF RRK LR +L + +L Sbjct: 183 QPPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIDPQVLEP 242 Query: 253 A----GIETNLRAENLSIEDFCRITNILTDNQDI 282 GI R + ++ E + + L NQD+ Sbjct: 243 LAASVGISLQQRPQEVAAEAWVALARGL--NQDV 274 >gi|225850076|ref|YP_002730310.1| dimethyladenosine transferase [Persephonella marina EX-H1] gi|254807878|sp|C0QUE5|RSMA_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225645312|gb|ACO03498.1| dimethyladenosine transferase [Persephonella marina EX-H1] Length = 265 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 14/259 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 PKK GQ+ L+ +++KI E + TV+EIG G G LT+ +L + V IE Sbjct: 3 NFRPKKRFGQHLLISKGVIQKIVECLDIKEDDTVVEIGVGTGQLTEEILRRNPKIVYGIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ +PI+++ N +I++D VD K + I++ NLPYN+ + +L N Sbjct: 63 IDKTVYPIIEERFKDFKN-FVLIKEDFFDVDLRKLTD--GKIKLTGNLPYNVASHILVN- 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + QKEV +++ + + Y +SV + + F P Sbjct: 119 --TAFYIDILQLAVFMIQKEVAQKLVGKPKTKDYTFMSVFLQTFFDIDYVMSVPARFFSP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 PKVTS VI IP +P L+ +KK F RRK LR + +++L +AG Sbjct: 177 PPKVTSAVIRMIPKEK-LPVSLDHMKKYKNFVSMLFSNRRKMLRSKI----DKDILERAG 231 Query: 255 IETNLRAENLSIEDFCRIT 273 I+ RAE LS++DF R+ Sbjct: 232 IDPKARAEELSVDDFIRLF 250 >gi|311087037|gb|ADP67117.1| dimethyladenosine transferase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 308 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H P K GQNFL++ + +K I + T++EIG G Sbjct: 36 MTKNFKKH-----------FPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 85 LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI NLPYNI T L+ + + + QKEV ER+ + + YGRLS+++ Sbjct: 142 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 198 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237 + ++ ++SP F P PKV S I+ PH N + L IT++AF RRK L Sbjct: 199 YYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 258 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 R SLK L E L + I +NLRAEN+S+ +C++ N L + Sbjct: 259 RHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYLYKKSN 302 >gi|33519600|ref|NP_878432.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus] gi|62900575|sp|Q7VQK3|RSMA_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33517263|emb|CAD83647.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus] Length = 271 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 10/258 (3%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ FL D NI+ I VIEIG G G LT+ + + +I+IE+D Sbjct: 13 KKWGQIFLKDQNIIHSIISILNLKKYQNVIEIGPGLGALTKPISDI-IDFLILIERDPNL 71 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISAD 141 L + +++I DA+ +DF K N + IR+I NLPYNI T+L+ + Sbjct: 72 VNRLLHTFT--SKKVKIFNKDAMTIDFSKLLTNPNQKIRLIGNLPYNISTKLIIHLYK-- 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + QKEV +RI AQ N+ YGRLS+ + K + ++ F P PKV Sbjct: 128 -YINIIHDMHFMLQKEVAQRIVAQPNNKAYGRLSIFAQYYCKVQALLEVPKKSFIPIPKV 186 Query: 202 TSTVIHFIPH--LNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 S ++ FIP+ NP P + L +T+ AF +RRK + SL L + Q GI T Sbjct: 187 ESMIVQFIPYHTNNPYPTVNISLLSLLTKFAFHQRRKIIHNSLSSLLNSTEIIQCGINTE 246 Query: 259 LRAENLSIEDFCRITNIL 276 RAENL+I+ FC++T IL Sbjct: 247 SRAENLTIQQFCKLTTIL 264 >gi|269926972|ref|YP_003323595.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798] gi|269790632|gb|ACZ42773.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798] Length = 288 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 20/292 (6%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN H + IL Y + PKK +GQNFL+ +L+ I ++S T++EIG G G LT Sbjct: 1 MNNNFHDPRLILKKYGLYPKKGLGQNFLISPKVLRTILQASEITPQDTILEIGPGTGVLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSP 118 + L AR V+ IE D+ IL+ +Q+PN + I+Q + L+++ + I Sbjct: 61 RHLA--AARCVVAIELDETLVQILRQELAQYPN-IHIVQGNILEIEHPQLVAELCGIEKN 117 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +II NLPY I + + ++ P + ++ QKEV ERITA P L+V Sbjct: 118 YKIIGNLPYYITSHAIRRFLEIQPSPSL---VIIMVQKEVAERITATP--PKMSLLAVSV 172 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKT 236 + M+ + F P P+V S V+ +P + +I F ++RK+ Sbjct: 173 QYYAIPEMVTLVRRTAFIPPPEVDSAVLRLRVREHPLFPDIPSDIYFRIVSAGFAQKRKS 232 Query: 237 LRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L SL + LL +A I+ N+RAE L++ED+ RI L + + Sbjct: 233 LLNSLSSSLNLPKSRIATLLDKASIDHNVRAEQLTLEDWARICRQLMECESY 284 >gi|86160103|ref|YP_466888.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C] gi|122064278|sp|Q2IFT9|RSMA_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85776614|gb|ABC83451.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 284 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 23/290 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M ++ S + +L Y + KK GQNFL + +L IA + G V+E+GAG G+LT Sbjct: 1 MTDRYPSPRALLDRYDLRAKKSWGQNFLGEEAVLDDIARLAAPRAGDPVLELGAGLGHLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---------F 113 LL GAR V+ +E+D+ +L+ + +R+ +++ DA ++D Sbjct: 61 ARLLARGAR-VVAVERDRDMARVLR---GELGDRITLLEADAARLDHAALAARFGAPAAA 116 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + + ++ NLPY++ + +LF+ + L Q+EV ER+ A S +G Sbjct: 117 GEGARLAVVGNLPYHLTSPILFSILDQVAH---VSRAVFLLQREVAERLAAPPASRDWGL 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGK 232 LSVL + ++ + P F+P PKV S V+ + +++ + FG Sbjct: 174 LSVLLQREAEVSVERIVPPGAFWPPPKVESAVLCALFRPPADAVGDPARFRRLVKAGFGL 233 Query: 233 RRKTLRQSL--KRLGGENLLH----QAGIETNLRAENLSIEDFCRITNIL 276 RRKTLR +L +L L AG++ R E L++ ++ + L Sbjct: 234 RRKTLRNALGSAKLAEPARLEAAFAAAGVDPGRRGETLTLAEWAALDRAL 283 >gi|148654432|ref|YP_001274637.1| dimethyladenosine transferase [Roseiflexus sp. RS-1] gi|148566542|gb|ABQ88687.1| dimethyladenosine transferase [Roseiflexus sp. RS-1] Length = 297 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 31/300 (10%) Query: 1 MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT++N ++ L + P + MGQNFL+D L I ++ TV+E+G G Sbjct: 1 MTVSNPYLSRARVRAALHALGLRPSRSMGQNFLIDGAALATIVTAAALTADDTVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G LT L+ AR V+ +E D++ L+ PN L IIQ D L++ Sbjct: 61 LGVLTWELVQR-ARTVVAVELDRRLAERLRTEFRTFPN-LAIIQGDVLRLPPATILAEHD 118 Query: 118 --------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 P +++ANLPY I + L +++S P + +L Q+EV RI A+ Sbjct: 119 PDAASGARPYKVVANLPYAITSAALRHFLSTPLRPTL---MVVLVQQEVAARICARAGDL 175 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQ 227 L+ + ++ + FFP+P+V S+V+ H P E+L ++ + Sbjct: 176 --SVLAHAVQIYAEPEIVARVPASSFFPAPEVDSSVLRLRIHPQPAVVSDQPEALLRLIK 233 Query: 228 EAFGKRRKTLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 F RK L +L R + L AGI+ RAE +++E++ + L Sbjct: 234 AGFLHPRKQLGNALPGGMAAMGMKIDRQRVLDALAAAGIDPTRRAETVTLEEWGAVYRAL 293 >gi|57525891|ref|NP_001003556.1| probable dimethyladenosine transferase [Danio rerio] gi|50417873|gb|AAH78286.1| Zgc:101122 [Danio rerio] Length = 306 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + I+ +GQ+ L + ++ I E + V+E+G G GN+T L Sbjct: 8 KKSRTHQEVKSQGIMFNTGIGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KV+ E D + L+ P N+L+I+ D LK + FF++ +A Sbjct: 68 LE-KAKKVVACELDARLVAELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + +F + PF+ L+FQ+E R+ A+ Y RLS+ T + Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + F P PKV S+V+ P P P + + + AF ++ K L + K Sbjct: 178 VDHLTKVGKNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKMLSAAFKS 237 Query: 244 LGGENLLHQ 252 E LL + Sbjct: 238 AAVEKLLEK 246 >gi|295838307|ref|ZP_06825240.1| dimethyladenosine transferase [Streptomyces sp. SPB74] gi|295826962|gb|EFG65164.1| dimethyladenosine transferase [Streptomyces sp. SPB74] Length = 301 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 21/288 (7%) Query: 1 MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + ++ + + + P K GQNF++D N +++I ++ + TV+E+G G Sbjct: 1 MTRTDPLLGPADIRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 G+LT LL + A V +E D + + R ++ DAL+V + Sbjct: 61 LGSLTLALLEVAAD-VTAVEIDGTLAAALPATVAARLPEKAERFRLVHSDALRV---REL 116 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +P ++ANLPYN+ +L + + P E ++ Q EV +R+ A S YG Sbjct: 117 PGPAPTALVANLPYNVAVPVLLHMLE---HFPSVERTLVMVQAEVADRLAAPPGSRVYGV 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFG 231 SV W I VF+P+P V S ++ + P+ + + AF Sbjct: 174 PSVKAAWYAHVKRAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFA 233 Query: 232 KRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 +RRK LR + E L AG+ R E+L++E+F RI Sbjct: 234 QRRKGLRAALAGWAGSAAAAEEALRAAGVSPLARGESLTVEEFARIAE 281 >gi|74222329|dbj|BAE26964.1| unnamed protein product [Mus musculus] Length = 313 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ Sbjct: 27 GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACG 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 ++ + E+ SI D +I ILT Sbjct: 257 IHCSVQNTVIPEDFSIAD--KIQQILTS 282 >gi|218885605|ref|YP_002434926.1| dimethyladenosine transferase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756559|gb|ACL07458.1| dimethyladenosine transferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 270 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 126/264 (47%), Gaps = 8/264 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK +GQNFL D NI KI + VIEIG GPG LT+ + G ++ ++E Sbjct: 9 GPRAKKSLGQNFLRDRNIAAKIVAALRIGPEDRVIEIGPGPGALTRHIHAAGPAQLFLLE 68 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD + P + + DAL +E+ + S ++I NLPYN+ + L+++ Sbjct: 69 KDYHWATEHGRTRPAEPPVITPVLTDALLFPWERLTSARS-WKVIGNLPYNVASPLMWDI 127 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 +S P + QKEVGERI A S YG LSV M F + P VF P Sbjct: 128 LSTA---PGLARAVFMIQKEVGERIVAAPGSGAYGALSVWLQSFVTPRMEFIVPPQVFVP 184 Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQA 253 PKV S V+ F+P L ++ + F +RRK L++ L+ LL Sbjct: 185 RPKVDSAVLSFVPLGAARGRFDPARLSRLLKVCFQQRRKQLQRILRGYVQGDVPALLAGL 244 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 G++ +R E+L+ EDF ++ + Sbjct: 245 GLDPAVRPESLAPEDFHMLSESVK 268 >gi|119571771|gb|EAW51386.1| dimethyladenosine transferase, isoform CRA_c [Homo sapiens] Length = 266 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 12/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK 253 >gi|114600101|ref|XP_001136315.1| PREDICTED: dimethyladenosine transferase isoform 1 [Pan troglodytes] gi|297675339|ref|XP_002815640.1| PREDICTED: probable dimethyladenosine transferase-like isoform 2 [Pongo abelii] gi|12803983|gb|AAH02841.1| DIMT1L protein [Homo sapiens] Length = 275 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 12/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK 253 >gi|259089147|ref|NP_001158611.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss] gi|225705252|gb|ACO08472.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss] Length = 306 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 12/241 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + ++ +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV Sbjct: 16 VKNRGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D + L+ P +L+I+ D LK + FF++ +ANLPY I + Sbjct: 75 VACELDGRLVAELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL K E LL Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLE 245 Query: 252 Q 252 + Sbjct: 246 K 246 >gi|67458648|ref|YP_246272.1| dimethyladenosine transferase [Rickettsia felis URRWXCal2] gi|67004181|gb|AAY61107.1| Dimethyladenosine transferase [Rickettsia felis URRWXCal2] Length = 243 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 134/240 (55%), Gaps = 7/240 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 7 PSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 66 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + VIE D++ P+L +I +PN L II+ DALK++ + II+NLPY Sbjct: 67 KNPASLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDL--GYDKVTIISNLPY 123 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ W+ ++TL+ QKEV ERI A ++ YGRLSV+ TK Sbjct: 124 HIGTELVIRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKVEKC 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGG 246 FD++P F+P PKV S ++ IP NP + +++IT+ AF RRK ++ SLK L Sbjct: 181 FDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLVP 240 >gi|187735621|ref|YP_001877733.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC BAA-835] gi|187425673|gb|ACD04952.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC BAA-835] Length = 459 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K ++ +L +++ P K +GQNFL D N+ + I E V+E+G G G+LT+ Sbjct: 2 KPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEHA 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L RK++++E D + K+ + P+ +E+ D D F +P++ + NL Sbjct: 62 APLC-RKLVLVEFDSRLAEYQKERWAGDPH-VEVHHADGASWDPRGLF-AEAPVKFLGNL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+ G +L N++S P E ++ QKE +RI A + +G LS+ Sbjct: 119 PYSAGGAILQNFLSR---PSAVERAVVMLQKEFIDRILATPDDDAFGLLSLRIQKNWIPR 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + I P F P P++ STV+ P P + ++ ++AF +RRK L++ L Sbjct: 176 ALKTIPPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQLPA 235 Query: 244 LGG-ENLLHQAGIETNLRAENLSIEDFCRITNILTDN--QDIA 283 E + G+ + RAE L++ + + + N +D+A Sbjct: 236 SPPWEGVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVA 278 >gi|320335301|ref|YP_004172012.1| ribosomal RNA small subunit methyltransferase A [Deinococcus maricopensis DSM 21211] gi|319756590|gb|ADV68347.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus maricopensis DSM 21211] Length = 282 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 151/278 (54%), Gaps = 17/278 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ ++ + I K +GQNFL+D N+L+ IA++ G+ G++V+E+G G G LT+ + Sbjct: 11 SPRTVRDLMQRHGIRATKSLGQNFLVDGNVLRSIADAGGAASGVSVLEVGPGLGVLTREV 70 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 GA V+ +EKD++ P+L + + +E++ DALK D+++ + + R+IANL Sbjct: 71 AERGAH-VVTLEKDERLRPVLAETLAGLD--VEVVWGDALKFDYDRLPDGT---RVIANL 124 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I T LL ++++ S T+L Q+EV ER+ A+ YG +S L + Sbjct: 125 PYYISTALLSKFMASAR----IVSATVLVQREVAERLAAKPGEDAYGFMSALAALHGRVR 180 Query: 186 MMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ D+ F P+P VTS+V+ F + L ++ + A RRKT+R +L+ Sbjct: 181 IVRDVPKGAFIPAPDVTSSVVRLDFTGFEDSGQKPDARLIRLMEAALHHRRKTMRNNLRM 240 Query: 244 LG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E L G+ ++RAE++++ D R L Sbjct: 241 AGFDAGAVEQALETVGLRADVRAEDVALRDMHRFAQAL 278 >gi|307152257|ref|YP_003887641.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822] gi|306982485|gb|ADN14366.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822] Length = 279 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 15/278 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L +I +++ + ++EIG G G LT+ LL V+ +E D Sbjct: 4 RPRKRFAQHWLRSEQALSEIIQAAQLKNTDRLLEIGPGTGILTRRLLPE-VESVVAVEID 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135 + L Q N L ++Q D L +D F + +++AN+PYNI +L Sbjct: 63 RDLCKKLVKSLGQLDNFL-LLQGDILSLDLTTELAPFPKFTPFNKVVANIPYNITGPILE 121 Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P +E + LL QKEV ER+TA+ + Y LS+ + + ++ Sbjct: 122 YLLGTISEPGHQKYELIVLLMQKEVAERLTAKPGTKAYSALSIRVQYLAACEWICEVPAR 181 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL----GGEN 248 F+P PKV S V+ P P L + + F RRK L +LK + Sbjct: 182 AFYPPPKVDSAVVRLRPQRVARPANNPRQLDTLVKLGFANRRKMLHNNLKGIIELERLTE 241 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT--DNQDIAI 284 LL + I RAE LS+E + ++N LT N D+++ Sbjct: 242 LLEKLEINPQCRAEELSLEQWIELSNQLTINTNHDLSL 279 >gi|311085884|gb|ADP65966.1| dimethyladenosine transferase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 308 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 36 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 85 LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI NLPYNI T L+ + + + QKEV ER+ + + YGRLS+++ Sbjct: 142 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 198 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237 + ++ ++SP F P PKV S I+ PH N + L IT++AF RRK L Sbjct: 199 YYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 258 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 R SLK L E L + I +NLRAEN+S+ +C++ N L + Sbjct: 259 RHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYLYKKSN 302 >gi|258645613|ref|ZP_05733082.1| dimethyladenosine transferase [Dialister invisus DSM 15470] gi|260402971|gb|EEW96518.1| dimethyladenosine transferase [Dialister invisus DSM 15470] Length = 286 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 13/276 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ +L + I K +GQNFL+ +I+ +IA ++ +G V+EIGAG G LTQ L G Sbjct: 12 VRYVLQRFGIRAKHRLGQNFLVRPDIVAEIAAAAELAEGAFVLEIGAGIGTLTQALAETG 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V E D+ +L + N + II +D LK + ++ ++ ANLPY I Sbjct: 72 AN-VTTFEIDKSLENVLTHTLEAY-NNVHIIYEDVLKANLKEILGDNN-WHAAANLPYYI 128 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +L I ++ + + QKEV +RI A+ S YG L++ + + D Sbjct: 129 TTPILLYLIQSELPISLF---VFMMQKEVADRILAKAGSKDYGALTLAVQFDCTVERVMD 185 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG-- 245 I P F P P VTSTV+ P + ++ + FG+RRK ++K G Sbjct: 186 IPPAAFLPHPAVTSTVLKIRRRKEPAVKVADRKLFFRLVKMGFGQRRKVFTNAMKSGGIS 245 Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ +L +AGI+ R E S+E++ + N + Sbjct: 246 MELGKKILERAGIDGGRRGETFSMEEYAALANAWDE 281 >gi|262200033|ref|YP_003271242.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365] gi|262083380|gb|ACY19349.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365] Length = 295 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 128/283 (45%), Gaps = 14/283 (4%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 N +T++ Y + KK GQNFL+ + I +++ VIE GAG G LT Sbjct: 6 NEAFPDPRTLMRKYGLGAKKSWGQNFLISERAYRAIVDAAVRGGDDWVIEFGAGLGTLTM 65 Query: 64 MLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 L KV+ +E+D++ +L+ N +EII+ +AL D + + Sbjct: 66 RLAERVPDGKVLAVERDREMAEVLRGELGHLDN-VEIIEGNALTYDIAMVGRWYGERVSV 124 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 NLPYNI ++++ + I A T++ Q+E+ +R+ A + YG L VL G Sbjct: 125 CGNLPYNIASQIIMHIIDAREH---VARATVMIQREMADRLVAVPGTKAYGALGVLVGTF 181 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + + F P+PKV+STV+ H+ + AFG+RRK L Sbjct: 182 ADVSTVIHVPASGFVPAPKVSSTVVRLDLLSDEHMRVQVSDFAHYADVVHGAFGQRRKKL 241 Query: 238 RQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNIL 276 R +L ++ L A I+ R E L +F R+ + L Sbjct: 242 RNALGARWPMDVVDAGLSDADIDGGRRGETLDRVEFARLADHL 284 >gi|172037411|ref|YP_001803912.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51142] gi|254807863|sp|B1WRJ7|RSMA_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171698865|gb|ACB51846.1| rRNA dimethyladenosine transferase [Cyanothece sp. ATCC 51142] Length = 270 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 13/269 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L++I +++ ++EIG G G LT+ LL L + +I +E D Sbjct: 3 QPRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPL-VQSLIAVELD 61 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLF 135 L N L ++Q D LK+D +++AN+PYNI + +L Sbjct: 62 WDLCKKLVKSLGDEDNFL-LLQGDILKLDIATEAQQFPKFLPINKVVANIPYNITSPILD 120 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P P ++ + LL QKEV +RI A S +YG LS+ + + D+ Sbjct: 121 KLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPGSKNYGALSIKMQYLADCNYICDVPKK 180 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--- 249 F+P PKV S VI F P + L+ + F RRK LR +L+ L +L Sbjct: 181 SFYPPPKVDSAVITFRPRSLLNSATNPKYLETLINLGFSSRRKMLRNNLQSLIDRDLLTE 240 Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILT 277 L + + +RAENL + + ++N + Sbjct: 241 FLTEIDLNEQVRAENLDLNQWIALSNYFS 269 >gi|195503410|ref|XP_002098640.1| GE23825 [Drosophila yakuba] gi|194184741|gb|EDW98352.1| GE23825 [Drosophila yakuba] Length = 306 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 18/284 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRIHNDVQKQGIVFNKDFGQHILKNPLVITSMLEKAALRATDVVLEIGPGTGNMTVPM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK + FF++ IA Sbjct: 68 LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E ER+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITN---ILTDNQDIA 283 +L + + +LR E +ED ++ N + ++QD+A Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PVEDDFKMQNKVIAILEDQDMA 279 >gi|256830231|ref|YP_003158959.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028] gi|256579407|gb|ACU90543.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028] Length = 280 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 12/268 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK+ +GQNFL D NI ++I S G V+EIG G G LT++L V+ +EK Sbjct: 7 FAPKRSLGQNFLSDPNICRRIVASLELAPGDPVLEIGPGRGALTRILAGHDG-PVMALEK 65 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + +K + ++ D L +E + + +I NLPYN+ + +++ + Sbjct: 66 DSELVSWIKAEFPA----VGVVHADGLDFCWEGTRRLPG-LSLIGNLPYNVASPMIWEMV 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S + S+ + QKEV R+TA++ S YG LS G + +F + PHVF P Sbjct: 121 SRCR---SFRSMLFMVQKEVALRLTAKEGSRTYGALSAWVGNFVRGEYVFTVPPHVFRPQ 177 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255 PKV S ++ F+P +P +L + F +RRK L LK E + G+ Sbjct: 178 PKVDSAIVRFLPRPDPAWEDAAALSWTVKILFQQRRKQLGTILKAHWSEAVETWCGELGV 237 Query: 256 ETNLRAENLSIEDFCRITNILTDNQDIA 283 + +R E LS + + +L + A Sbjct: 238 DRRVRPEELSPDALRSLARVLDPKNEAA 265 >gi|189346402|ref|YP_001942931.1| dimethyladenosine transferase [Chlorobium limicola DSM 245] gi|226729767|sp|B3EIC2|RSMA_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189340549|gb|ACD89952.1| dimethyladenosine transferase [Chlorobium limicola DSM 245] Length = 263 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 127/259 (49%), Gaps = 11/259 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H +I KK +GQNFL D NI +KI SG+ ++EIG G G LT+ ++ + Sbjct: 7 KHTEIAVKKQLGQNFLTDRNITRKIVRLSGAKPEENILEIGPGFGALTKEIIEVCP-SFT 65 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 V+EKD + ++ +++P +L +I+ D LK+D E +RI+ N+PY+I + +L Sbjct: 66 VVEKDPKLAAFIR---TEYP-QLNVIEADFLKIDLEAVTGAR-KLRILGNIPYSITSPIL 120 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + TL+ Q EV RI A ++ YG L+V + F + V Sbjct: 121 FRLLEYRRC---FMHATLMMQHEVAMRIVAVPSTKEYGILAVQLQAFFDVSYGFRVGRKV 177 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 F P P V S VI P + E + + AF +RRKTL +LK + + Sbjct: 178 FKPQPGVDSAVITITPKEHVPLSDPEGFSRFVRCAFHQRRKTLLNNLKESYNLDAVPSEV 237 Query: 255 IETNLRAENLSIEDFCRIT 273 + RAE L+I++ + Sbjct: 238 L--KRRAEALAIQELFELF 254 >gi|148244651|ref|YP_001219345.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii HA] gi|146326478|dbj|BAF61621.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii HA] Length = 254 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 131/256 (51%), Gaps = 13/256 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL+D I+ +I + ++EIG G G +T LL ++ VIE Sbjct: 6 HKARKRFGQNFLIDNRIIDRIIATISPKRNDNLLEIGPGQGAITIPLLNY-VNQLNVIEI 64 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D IL+ + H L I Q D LK D PIRII NLPYNI + +LF+ I Sbjct: 65 DLNLISILESLEYSH---LIIYQGDVLKFDLNIL---PMPIRIIGNLPYNISSSILFHLI 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + +T++ QKEV ER+ A S YGRLSV+ M+F + P F P Sbjct: 119 EN---LDKIQDITVMLQKEVVERMGANSGSKVYGRLSVMMQTFFNINMIFTVPPESFNPV 175 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 P+V S +++ P P ++ +K+ + AF +RRK LR SLK + + Q I+ + Sbjct: 176 PRVDSAIVYLKPLAQPKTKNIKVFEKVVKLAFSQRRKMLRNSLKYVLTQ---KQTDIDLS 232 Query: 259 LRAENLSIEDFCRITN 274 RAE L+++DF +T Sbjct: 233 RRAEMLTVDDFITLTQ 248 >gi|27151613|sp|Q9RED9|RSMA_BURSP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|6687038|emb|CAB64788.1| KsgA, high level kasugamycin resistance protein [Burkholderia sp.] Length = 277 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 11/268 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVI 74 +K GQ+FL+D ++ I + ++EIG G G LT LL GA ++ Sbjct: 9 QGHTARKRFGQHFLIDSAVIDAIVSAIAPAPQDCLVEIGPGLGALTWPLLERLGGAGRLH 68 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRL 133 IE D+ L+ + L + DAL+ DF + + +RI+ NLPYNI + L Sbjct: 69 AIEMDRDLAAHLQRLGHAS---LILHAGDALRFDFAQLARAEQARLRIVGNLPYNISSPL 125 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF+ + + Q+EV RI A S HYGRLSV+ R +FD+ P Sbjct: 126 LFHLLDEMN---EVVDQHFMLQREVAARIAAAPGSAHYGRLSVMLQSRYAVERLFDVPPC 182 Query: 194 VFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P P V S V+ PH + + AF +RRK LR +L Sbjct: 183 AFAPPPAVHSAVLRMAPHASRALPQLDWARFAALVRAAFSQRRKILRHTLSVYQKTPDFD 242 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 G + RA+ + + ++ ++ + N Sbjct: 243 ALGFDHGRRAQEVPVGEYLKLAQHIEQN 270 >gi|116070730|ref|ZP_01467999.1| 16S rRNA dimethylase [Synechococcus sp. BL107] gi|116066135|gb|EAU71892.1| 16S rRNA dimethylase [Synechococcus sp. BL107] Length = 274 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 123/274 (44%), Gaps = 13/274 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D +L +I ++ V+E+G G G LT+ LL A ++ IE Sbjct: 5 GHTARKRFGQHWLRDARVLDQIVSAARLQQDDRVLEVGPGRGALTERLLASAAAQIHAIE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L D +R + + D L + +++AN+PYNI LL Sbjct: 65 LDRDLVQGLHDRFGA-QSRFSLREGDVLDAPLH-LGDGGFANKVVANIPYNITGPLLARL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I P P ++ L LL QKEV ERI AQ + LSV +++ + P F Sbjct: 123 IGRLDRPVEPTYDCLVLLLQKEVAERIRAQPGRSSFSALSVRMQLLADCSLVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S VI P +P L ++ + ++AF RRK LR +L + +L Sbjct: 183 QPPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIEPQILEP 242 Query: 253 A----GIETNLRAENLSIEDFCRITNILTDNQDI 282 GI R + ++ E + + L NQD+ Sbjct: 243 LAASVGISLQQRPQEVAAEAWVALARGL--NQDV 274 >gi|73670681|ref|YP_306696.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro] gi|118600876|sp|Q466S6|RSMA_METBF RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|72397843|gb|AAZ72116.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro] Length = 287 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 83/278 (29%), Positives = 137/278 (49%), Gaps = 23/278 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++++L Y I Q+FL+D L +I ++ V+EIGAG GNLT+ L Sbjct: 12 VRSLLKKYNIKG-GTFDQHFLVDAGYLDRIVAAAELGPKDVVLEIGAGVGNLTERLAK-K 69 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +KVI IE D +L D + N +EII DALKV+F +F +I++NLPY+I Sbjct: 70 VKKVIAIELDPVLVRVLHDRFDKVGN-IEIIAGDALKVEFPEF------DKIVSNLPYSI 122 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + ++ L++Q E R+ +Q N Y RL+V T + A+++ Sbjct: 123 SSEITFKLLRHK-----FKLGILMYQYEFAARMVSQPNCKDYSRLTVDTCYFADASILMK 177 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQS-------L 241 + F P+P+V S VI +P P ++ F +RRK LR + L Sbjct: 178 VPKSAFQPAPEVDSAVIKLVPRPVPFEVKDQAFFMNFVSAVFSQRRKKLRNAILNTNYLL 237 Query: 242 KRLGGENLLHQAGIE-TNLRAENLSIEDFCRITNILTD 278 K + ++ + + + RAENL+ E+ ++ N + D Sbjct: 238 KIPNIKEVISRLPEDMMSKRAENLTPEELAQVANHIID 275 >gi|114609911|ref|XP_001143057.1| PREDICTED: transcription factor B1, mitochondrial isoform 1 [Pan troglodytes] Length = 288 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 86/274 (31%), Positives = 132/274 (48%), Gaps = 19/274 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ ++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L +++V+EKD +F P L+ +S P +L I+ D L EK F + Sbjct: 74 LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + +TL FQKEV ER+ A S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + +F I F P P+V V+HF P + P I + ++K+ Q F Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253 Query: 231 GKRRKT----LRQSLKRLGGENLLHQAGIETNLR 260 RRK LR+ LKR +N + N R Sbjct: 254 QFRRKYCHRGLREELKRRKSKNEEKEEDDAENYR 287 >gi|23009722|ref|ZP_00050666.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 364 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 17/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF+ D ++KI ++ G V+E+G G G+LT LL Sbjct: 62 PAEIRDLAGRLGVRPTKTLGQNFVHDGGTVRKIVRAADVRPGERVVEVGPGLGSLTLGLL 121 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V+ +E D L D H +RLE++ DAL+V P ++ Sbjct: 122 EAGA-SVVAVEIDPVLARQLPDTVVTHVPDVGDRLEVVGADALEVTS---LPGEPPTALV 177 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L ++ E + ++ Q EV +R+ A S YG SV W Sbjct: 178 ANLPYNVAVPVLLTFLER---FDSLERVLVMVQAEVADRLAAPPGSRTYGVPSVKAAWYA 234 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 A I VF+P P V S ++ P E + + AF +RRK LR +L Sbjct: 235 DARRAGTIGRSVFWPVPNVDSALVALDRREPPATAATREQVFAVVDAAFAQRRKMLRSAL 294 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G +L A ++ R E L + F R+ L Sbjct: 295 SGLAGSASVAAEVLEAADVDPQARGEVLDVAAFARVAEQL 334 >gi|78212718|ref|YP_381497.1| dimethyladenosine transferase [Synechococcus sp. CC9605] gi|119365857|sp|Q3AKE0|RSMA_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78197177|gb|ABB34942.1| dimethyladenosine transferase [Synechococcus sp. CC9605] Length = 274 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 122/268 (45%), Gaps = 11/268 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++LLD ++L++I E++ V+E+G G G LT+ LL G + V IE Sbjct: 5 GHHARKRFGQHWLLDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+D P + Q D L+ E + +++AN+PYNI LL Sbjct: 65 LDRDLVQGLRDRFVVQPG-FSLHQGDVLEAPLE-LSDGRIADKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P P ++ L LL QKEV ERI A+ + LSV + + + P F Sbjct: 123 VGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCHSVCPVPPRCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 P PKV S VI P +P ++ + ++AF RRK LR +L + N L Sbjct: 183 QPPPKVQSEVICLEPLPASERVMPDLAARVESLLKQAFLARRKMLRNTLAGVAEPNRLKD 242 Query: 252 ---QAGIETNLRAENLSIEDFCRITNIL 276 AG R + L+ + + L Sbjct: 243 LAASAGFSLQQRPQELAPATWVALARGL 270 >gi|33865586|ref|NP_897145.1| dimethyladenosine transferase [Synechococcus sp. WH 8102] gi|62900567|sp|Q7U7D3|RSMA_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33632755|emb|CAE07567.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 8102] Length = 302 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 131/279 (46%), Gaps = 11/279 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ +K GQ++L D +L +I ++ V+E+G G G LT+ LL+ A V Sbjct: 1 MAFQGHQARKRFGQHWLKDQTVLDRIVAAADLQPSDRVLEVGPGRGALTERLLSSPAAAV 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D+ L++ + P R + Q D L++ + + + +++AN+PYNI L Sbjct: 61 QAVELDRDLVDGLRERFAGDP-RFSLRQGDVLELPL-QLEDGVAASKVVANIPYNITGPL 118 Query: 134 LFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L + P P ++ L LL QK+V ERI A+ + LSV + T + + Sbjct: 119 LDRLVGRLDRPVEPPYQRLVLLVQKQVAERIRARPGHSSFSALSVRMQLLARCTTVCPVP 178 Query: 192 PHVFFPSPKVTSTVIHFIPHL--NPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 P F P PKV S VI P +P + ++ + ++AF RRK LR +L L E Sbjct: 179 PRCFQPPPKVQSEVIQIDPLPADKRLPSDIARRVESLLRQAFLARRKMLRNTLASLAPEP 238 Query: 248 ---NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L AG + + R + L+ + + + L D A Sbjct: 239 QLQALAAAAGFQLHQRPQELAPQVWVALARGLNQGIDAA 277 >gi|126657589|ref|ZP_01728744.1| dimethyladenosine transferase [Cyanothece sp. CCY0110] gi|126621045|gb|EAZ91759.1| dimethyladenosine transferase [Cyanothece sp. CCY0110] Length = 270 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 13/269 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 P+K Q++L L++I +++ + ++EIG G G LT+ LL L + +I +E D Sbjct: 3 QPRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VQSLIAVELD 61 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLF 135 L N L ++Q D LK+D +++AN+PYNI + +L Sbjct: 62 WDLCKKLVKSLGNEDNFL-LLQGDILKLDIATEAEQFPKFLPINKVVANIPYNITSPILE 120 Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + P P ++ + LL QKEV +RI A S +YG LS+ + + D+ Sbjct: 121 KLLGNIASPENPPYDLIVLLIQKEVAQRIVASPGSKNYGALSIKMQYLADCNYICDVPKK 180 Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--- 249 F+P PKV S VI F P + L+ + F RRK LR +L+ L +L Sbjct: 181 SFYPPPKVDSAVITFRPRPLLNSAINPKQLETLINLGFSSRRKMLRNNLQSLIDRDLLTK 240 Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILT 277 L + + +RAENL + + ++N + Sbjct: 241 FLTEIDLNEQVRAENLDLNQWIALSNHFS 269 >gi|225714284|gb|ACO12988.1| Probable dimethyladenosine transferase [Lepeophtheirus salmonis] Length = 312 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 17/263 (6%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ +GQ+ L + ++ I E SG TV+EIG G GNLT LL ++VI Sbjct: 23 GRQGLVFNTTLGQHILKNPAVVDSIVEESGLRSTDTVLEIGPGTGNLTAKLLE-KVKRVI 81 Query: 75 VIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V E D + L+ + ++L+II DA+K D FF++ +AN+PY I + Sbjct: 82 VCEVDPRMVAELQKHFQHSSYKSKLDIIVGDAIKTDLP-FFDVC-----VANVPYQISSP 135 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+F + PF+ L+FQ+E +R+ A Y RLS+ T + + + Sbjct: 136 LVFKLL---LHRPFFRVAVLMFQREFAQRLIAPPGDKLYCRLSINTQLLSTVHHLLKVGK 192 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 + F P PKV S+V+ P P P + +T+ F ++ KTL + + L + Sbjct: 193 NNFRPPPKVESSVVRIEPKNPPPPINFKEWDGLTRICFVRKNKTLGAAFSQTPVLLTLDK 252 Query: 253 A-----GIETNLRAENLSIEDFC 270 + ++ + E SI++ Sbjct: 253 SYRTHMSLKEEMLPEEFSIKELI 275 >gi|256833167|ref|YP_003161894.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603] gi|256686698|gb|ACV09591.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603] Length = 600 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 18/291 (6%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ +H ++ + + P K GQNFL D ++KI SG V+E+G G G+L Sbjct: 7 TLLGPAH-IRELAQECGVTPTKTKGQNFLHDAGTVRKIVRLSGVAPTDQVLEVGPGLGSL 65 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS 117 T LL G V IE D P L + RL ++ +AL+V + + Sbjct: 66 TLGLLDAGCH-VTAIELDDVLAPHLAGTVERFQPGASQRLTVVHGNALEVT--ELPDPQ- 121 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P ++ANLPYN+ +L + P + ++ Q+EV +R+ A S YG S Sbjct: 122 PTALVANLPYNVSVPILLTILER---FPTITRVMVMVQREVADRLVAPPGSRTYGTPSAK 178 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKT 236 W A + +VF+P+P V S +++ + + + AF +RRKT Sbjct: 179 LAWYGTANRAMKVGRNVFWPAPNVDSALVYLDRTMPVTTSASQRDVFAVIDAAFAQRRKT 238 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 LRQ+L + G +L AG+ R E L+I DF RI +T + + Sbjct: 239 LRQALAGIAGNSQRASTILEAAGVPPTARGEQLTIHDFARIAEAMTPKEPV 289 >gi|219682072|ref|YP_002468456.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621805|gb|ACL29961.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 273 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 1 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 50 LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 106 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI NLPYNI T L+ + + + QKEV ER+ + + YGRLS+++ Sbjct: 107 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 163 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237 + ++ ++SP F P PKV S I+ PH N + L IT++AF RRK L Sbjct: 164 YYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 223 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 R SLK L E L + I +NLRAEN+S+ +C++ N L + Sbjct: 224 RHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYLYKKSN 267 >gi|237785136|ref|YP_002905841.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM 44385] gi|237758048|gb|ACR17298.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM 44385] Length = 309 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 18/283 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + ++P K GQNF++D N +++I ++ V+E+G + L Sbjct: 23 PKEIRDLARTVGVVPTKKRGQNFVVDPNTVRRIVATADLSPDDHVLEVGP-GLGSLTLGL 81 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVD--FEKFFNISSPIR 120 KV +E D L +++ L++I DAL + K + P Sbjct: 82 LDVVSKVTAVEIDTTLAEQLPHTVAEYAATRAENLDVICADALALTGSVAKDLGTNPPTA 141 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +ANLPYN+ +L + + P + ++ Q EV +R+ A+ + YG SV + Sbjct: 142 FVANLPYNVAVPILLHVLE---IFPTITRVLVMVQAEVADRLAAEPGNRVYGVPSVKARF 198 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTL 237 + + I +VF+P+P V S ++ P P L I AF +RRKTL Sbjct: 199 YGQVQRVGAIGKNVFWPAPNVDSGLVKLTRGTRPWPTDSAARSQLWPIIDAAFAQRRKTL 258 Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 R +LK G EN L +AGI+ R E LSI++F + + Sbjct: 259 RAALKGHYGNAAAAENALREAGIDPQRRGETLSIDEFISLAQL 301 >gi|118600894|sp|Q4UMV1|RSMA_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase Length = 239 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 7/240 (2%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S+ + ++I P K GQNF+ D ++ KI +S + V+EIG G G LT+ +L Sbjct: 3 PSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + VIE D++ P+L +I +PN L II+ DALK++ + II+NLPY Sbjct: 63 KNPASLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDL--GYDKVTIISNLPY 119 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +IGT L+ W+ ++TL+ QKEV ERI A ++ YGRLSV+ TK Sbjct: 120 HIGTELVIRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKVEKC 176 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246 FD++P F+P PKV S ++ IP NP L +++IT+ AF RRK ++ SLK L Sbjct: 177 FDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLVP 236 >gi|115757168|ref|XP_779962.2| PREDICTED: similar to putative dimethyladenosine transferase [Strongylocentrotus purpuratus] Length = 292 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 40/286 (13%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 I+ +GQ+ L + +++ I + TV+E+G G GN+T +L A+KV+ Sbjct: 5 LGILFNTGIGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKMLD-KAKKVVAC 63 Query: 77 EKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D + L+ P +L++I D LK D FF++ +ANLPY I + + Sbjct: 64 ELDPRLVAELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VANLPYQISSPFV 117 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + PF+ L+FQ+E +R+ A+ Y RLS+ T + + + + Sbjct: 118 FKLL---LHRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNN 174 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253 F P PKV S+V+ P P P + + + AF ++ KTL + + G +L + Sbjct: 175 FKPPPKVESSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRNKGVVEMLEKNY 234 Query: 254 -------------GIE--------------TNLRAENLSIEDFCRI 272 ++ RA + I+DF ++ Sbjct: 235 RVHCSVKNIAIPDNLDMKEKVVSVLEKIEFEGKRARTMDIDDFLKL 280 >gi|225717294|gb|ACO14493.1| Probable dimethyladenosine transferase [Esox lucius] Length = 306 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 12/241 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + ++ +GQ+ L + ++ I E + V+E+G G GN+T LL A+KV Sbjct: 16 VKNQGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + D + L+ P +L+I+ D LK + FF++ +ANLPY I + Sbjct: 75 VACGLDGRLVAELQKRVQCTPMQAKLQILVGDVLKTELP-FFDVC-----VANLPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +F + PF+ L+FQ+E R+ A+ Y RLS+ T + + + Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + + AF ++ KTL K E LL Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLE 245 Query: 252 Q 252 + Sbjct: 246 K 246 >gi|291238518|ref|XP_002739171.1| PREDICTED: tfb1m protein-like [Saccoglossus kowalevskii] Length = 259 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ Y + +K + QNFLLD+N+ KI +GSL+G V E+G GPG +T+ + Sbjct: 8 PLPTIGDIIRMYGLRAEKQLSQNFLLDMNLTDKIVRHAGSLNGRYVCEVGPGPGGITRSI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L GA+KVIVIEKDQ+F P L+ ++ RL +I D +K + F + Sbjct: 68 LHSGAKKVIVIEKDQRFMPSLELLAEASDGRLGLIHGDVMKYNMRNMFPNDLRKAWEDDP 127 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ A + +TL FQKEV ER+ A P Sbjct: 128 PDVHIIGNLPFSVSTPLIIRWMEAISSHSGPFSYGRVQMTLTFQKEVAERLVAGVGDPQR 187 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS+++ K F I F P P V V+HF P ++P I + ++K+ + F Sbjct: 188 SRLSIMSQHLCKVKHAFTIPGTAFVPKPDVDVGVVHFTPLIDPLIQQPFKLVEKVVRCLF 247 Query: 231 GKRRKTLRQ 239 RRK ++ Sbjct: 248 QFRRKYCKR 256 >gi|303279442|ref|XP_003059014.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla CCMP1545] gi|226460174|gb|EEH57469.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla CCMP1545] Length = 380 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 108/240 (45%), Gaps = 12/240 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ I K GQ+ L + I+ I E G V+EIG G GNLT LL A+KV Sbjct: 23 AAYQGIQFLKSYGQHILKNPMIVNAIVEKGGVKSTDVVLEIGPGTGNLTMRLLET-AKKV 81 Query: 74 IVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I IE D + L+ S P+ L+II D LKVD F IAN PY I + Sbjct: 82 IAIEFDPRMVVELERRVSGTPHGHNLKIISGDFLKVDLPYF------DVCIANCPYQISS 135 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F +S P + S TL+FQ+E R+ P Y RLSV + T + + Sbjct: 136 PLVFKLLSHR---PMFRSATLMFQREFAMRLCVNPGDPLYCRLSVNAQLLARTTHILKVG 192 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P I + + FG++ KTL + L+ Sbjct: 193 KNNFRPPPKVDSSVVRIEPRSPMIDVNFREWDGLVRLCFGRKNKTLGGIFRAKTVLQLIE 252 >gi|116754303|ref|YP_843421.1| dimethyladenosine transferase [Methanosaeta thermophila PT] gi|116665754|gb|ABK14781.1| dimethyladenosine transferase [Methanosaeta thermophila PT] Length = 249 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 132/259 (50%), Gaps = 20/259 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+FL D I ++IA + ++EIG G G+LT+ L A +V IE D + Sbjct: 4 GQHFLTDRGIAERIAGYAEISPSDRILEIGPGKGSLTEFLAAR-AGRVYAIEADPELARY 62 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 +++ +E+IQ DAL+VD ++ ++++NLPY+I T++ + Sbjct: 63 VEESFP----NVEVIQGDALRVDLPEY------NKVVSNLPYHISTKITLRLLRNP---- 108 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ + L++Q+E ER+ A S YGRLSV + ++ + F P P V+S+V Sbjct: 109 -FDLMVLMYQREFVERMLASPGSREYGRLSVNVSYYADVEVLETVPRSAFRPMPHVSSSV 167 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN---LRAE 262 + P + I+++ F KRRK ++ +L +G + + ++ + R E Sbjct: 168 VRLRPRRDRELVDELIFSSISRDLFTKRRKKVKNALASIGVADDV-MLDLDPSILDARPE 226 Query: 263 NLSIEDFCRITNILTDNQD 281 +L +++F +I ++++++ Sbjct: 227 DLGVDEFVQIARVVSEHRS 245 >gi|163846476|ref|YP_001634520.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl] gi|222524255|ref|YP_002568726.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl] gi|163667765|gb|ABY34131.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl] gi|222448134|gb|ACM52400.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl] Length = 290 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 23/295 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ L + P + MGQNFLLD +L I + + V+E+G G G Sbjct: 1 MNPYLNPQRIRAALRALNLRPTRGMGQNFLLDGQVLATIVDEAKLNASDAVVEVGPGLGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117 LT L+ A +VI +E D++ L + L +IQ D LKV + Sbjct: 61 LTWELVQR-AGRVICVELDRRLADRLAAEFRD-QSHLYLIQGDVLKVAPSDLLARAAATP 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P +++AN+PY I LL +++ A T P LL Q EV ERI A Y L+ Sbjct: 119 PYKLVANIPYAITAPLLRHFLEATTPPDL---SILLVQWEVAERICAGPG--DYSVLAHA 173 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRK 235 + T++ + FFP+P V S ++ + + +L ++ + F RK Sbjct: 174 VQLYAEPTIVARVPAASFFPAPAVDSAILRLVRRPQLAVAVDDVNALFRLIKAGFLHARK 233 Query: 236 TLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L +L R LH AGI+ RAE +++ ++ ++ +L+++ Sbjct: 234 QLGNALPGGLAALGVTVSREHVVQALHAAGIDPQRRAETVTLAEWAKLLAVLSES 288 >gi|257471197|ref|ZP_05635196.1| dimethyladenosine transferase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 308 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 36 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 85 LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI NLPYNI T L+ + + + QKEV ER+ + + YGRLS+++ Sbjct: 142 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 198 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237 + ++ ++SP F P PKV S I+ PH N + L IT++AF RRK L Sbjct: 199 YYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 258 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 R SLK L E L + I +NLRAEN+S+ +C++ N L + Sbjct: 259 RHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYLYKKSN 302 >gi|227504167|ref|ZP_03934216.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940] gi|227199211|gb|EEI79259.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940] Length = 284 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 20/278 (7%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNFL D N +++I ++ V+E+G + L Sbjct: 11 EIRQLAEKLDVTPTKKLGQNFLHDPNTIRRIVAAADLQRDDRVVEVGP-GLGSLTLGLLE 69 Query: 69 GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 + V+E D + L + + + L +I+ DAL++ + P ++AN Sbjct: 70 AVDDLTVVEIDPRLAAQLPDTIAERAPEQAGNLRLIEKDALRIAPGEL---GEPTALVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EV ER+ A+ + YG SV + Sbjct: 127 LPYNVAVPVLLHLLE---LYPTIRRVLVMVQLEVAERLAAKPGNKVYGVPSVKASFYGTV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLRQS 240 I +VF+P+P + S ++ + P P +++ + AF +RRKTLR + Sbjct: 184 RQAGTIGKNVFWPAPNIESGLVRIDCFQDAPWPIDDATRKAVFPLVDAAFAQRRKTLRAA 243 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L G E L AGI+ LR E L++EDF R+ Sbjct: 244 LSGHFGGGPAAEEALVAAGIDPRLRGEKLAVEDFVRLA 281 >gi|168033422|ref|XP_001769214.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679479|gb|EDQ65926.1| predicted protein [Physcomitrella patens subsp. patens] Length = 302 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 12/238 (5%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 I +K GQ+ L + +++ I + +G V+EIG G GNLT LL + +KV+ + Sbjct: 17 QGIQFQKSKGQHILKNPLLVQSIVQKAGLKSTDIVLEIGPGTGNLTMKLLEVC-KKVVAV 75 Query: 77 EKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D + + P N+L++IQ D LK + F +AN+PY I + + Sbjct: 76 ELDPRMVLEVTRRVQGTPYANKLQVIQGDILKTELPYF------DVCVANVPYQISSPIT 129 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F +S P + ++FQKE +R+ AQ + RLSV T + + + + Sbjct: 130 FKLLSHR---PLFRCAVIMFQKEFAQRLVAQPGDSLFCRLSVNTQLLARVFHLLKVGKNN 186 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S+V+ P P + + + F ++ KTL ++ L+ + Sbjct: 187 FRPPPKVDSSVVRIEPRNPLPPINFKEWDGLIRLCFNRKNKTLGSIFRQKAVLALIEK 244 >gi|242015107|ref|XP_002428215.1| dimethyladenosine transferase, putative [Pediculus humanus corporis] gi|212512776|gb|EEB15477.1| dimethyladenosine transferase, putative [Pediculus humanus corporis] Length = 306 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 14/256 (5%) Query: 1 MTMNNKSHSLKTI--LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M K K + + ++ KK GQ+ L + +++ + E + V+EIG G Sbjct: 1 MGKIKKPKPTKELKGVIKQGMLFKKSAGQHILKNPLVIQNMVEKAALKSTDIVLEIGPGT 60 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNIS 116 GN+T LL A+KVI E D + L+ + ++LEII D LK + F Sbjct: 61 GNMTVKLLD-KAKKVIACEVDVRMVAELQKRVQCTPYQSKLEIIVGDVLKSELPFF---- 115 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +AN+PY I + L+F + PF+ L+FQKE R+ A+ Y RLS+ Sbjct: 116 --NACVANIPYQISSPLVFKLL---LHRPFFRCAILMFQKEFAHRLVAKPGDKLYCRLSI 170 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 T + ++ ++ + F P PKV S+V+ P P P + +T+ AF ++ KT Sbjct: 171 NTQLLARVDIVMKVAKNNFRPPPKVESSVVRIEPRNPPPPIQFKEWDGLTRIAFLRKNKT 230 Query: 237 LRQSLKRLGGENLLHQ 252 L + ++ +L + Sbjct: 231 LGAAFRQTSVLAVLEK 246 >gi|307107026|gb|EFN55270.1| hypothetical protein CHLNCDRAFT_23464 [Chlorella variabilis] Length = 312 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 12/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I K GQ+ L + +++ I + +G V+EIG G GNLT LL A+KVI +E Sbjct: 26 GIEFHKSKGQHILKNPLVVQSIVDKAGIKSTDVVLEIGPGTGNLTMKLLER-AKKVIAVE 84 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P N+L+II D +KV F +AN+PY I + L F Sbjct: 85 LDPRMVLELTRRVQGTPYQNQLQIIHGDVMKVQLPYF------DICVANIPYQISSPLTF 138 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ P + + +++Q E R+ A+ P Y RL+V T + + + + F Sbjct: 139 KLLAHR---PCFRAAVIMYQHEFAMRLVAKPGDPAYSRLAVNTQLLARVNHLLKVGRNNF 195 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ P P L + + FG++ KTL ++ LL Q Sbjct: 196 RPPPKVDSSVVRIEPRNPAPPVNLLEWDGLVRLCFGRKNKTLGAIFRQGNTLALLEQ 252 >gi|219681516|ref|YP_002467901.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624359|gb|ACL30514.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 273 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT N K H +P K GQNFL++ + +K I + T++EIG G Sbjct: 1 MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119 LT+ + L ++IVIE DQ +LK S ++L + +AL +F F+ I Sbjct: 50 LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 106 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 RI NLPYNI T L+ + + + QKEV ER+ + + YGRLS+++ Sbjct: 107 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 163 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237 + ++ ++SP F P PKV S I+ PH N + L IT++AF RRK L Sbjct: 164 YYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 223 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 R SLK L E L + I +NLRAEN+S+ +C++ N L + Sbjct: 224 RHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYLYKKSN 267 >gi|242247433|ref|NP_001156188.1| dimethyladenosine transferase-like [Acyrthosiphon pisum] gi|239790841|dbj|BAH71955.1| ACYPI005364 [Acyrthosiphon pisum] Length = 303 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 12/240 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 I+ KK GQ+ L + I++ + E S L TV+EIG G GNLT LL + VI Sbjct: 14 GRQGIMFKKDFGQHILKNPLIIQGMVEKSALLPTDTVLEIGPGTGNLTVKLLER-VKTVI 72 Query: 75 VIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 E D + LK + + N+L+I D LK + FFN+ ++AN+PY I + Sbjct: 73 ACEIDVRLVAELKKRVMNTPYQNKLQIRVGDVLKSELP-FFNV-----LVANIPYQISSP 126 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+F + PF+ L+FQ+E R+ A+ Y RLS+ T + ++ + Sbjct: 127 LVFKLL---LHRPFFRCAVLMFQREFAYRLVAKPGDKLYCRLSINTQLLARVDLIMKVGK 183 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 + F P PKV S V+ P P P +T+ AF ++ KTL K+ L + Sbjct: 184 NNFRPPPKVESNVVRIEPRNPPPPINFNEWDGLTRIAFSRKNKTLGAIFKQNAVAVTLEK 243 >gi|308807535|ref|XP_003081078.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri] gi|116059540|emb|CAL55247.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri] Length = 363 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 19/276 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++++GQ+FL+D +++ E++ +G V+EIG G GNLT LL+ GA V+ +EK Sbjct: 82 HEARRWLGQHFLIDASVVTDAVEAARLNEGDRVLEIGPGTGNLTCELLSRGAN-VLAVEK 140 Query: 79 DQQFFPILKD-ISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLPYNIGTR 132 D+ L+ + +H L +++ D LK D F + +++AN+PYNI T Sbjct: 141 DRNLAEKLRKGLCVEHGEALRLVEGDFLKWDGLAAAFARTSPEQPRAKVVANIPYNITTD 200 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +L + +E + +FQ+EV +R+ Y +SV + +K + + Sbjct: 201 VLKVLL---PMGDVFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRFVP 257 Query: 192 PHVFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 P F P P V S +I F P P+ Q F ++RK LR +LK + E Sbjct: 258 PTCFMPPPNVDSCLIGFKPKEPHELLPLNGTENQFFTFVQACFAQKRKMLRNNLKAVCEE 317 Query: 248 N----LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 N +R + L++E++ R+ N + + Sbjct: 318 NTMEGAFAMLDRGDKIRPQELTMEEYVRLFNFVRER 353 >gi|254431695|ref|ZP_05045398.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001] gi|197626148|gb|EDY38707.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001] Length = 300 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 118/264 (44%), Gaps = 16/264 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ++L D +L +I ++ G V+EIG G G LTQ LL A V +E Sbjct: 26 HRARKRFGQHWLTDAAVLDRIVAAAALAPGERVLEIGPGRGALTQRLLASDAAAVAAVEL 85 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L+ + R E+ Q DAL + + +++AN+PYNI LL + Sbjct: 86 DRDLVAGLQQRFGR-DARFELHQGDALTL------ALPPADKVVANIPYNITGPLLERLV 138 Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P P + L LL Q+EV ERI S Y LSV + + + P F Sbjct: 139 GRLDHPVQPPYRRLVLLLQREVAERIRCSPGSASYSALSVRMQLLGECRSVCAVPPRCFQ 198 Query: 197 PSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250 P PKV S VI PH P + +++ + +F RRK LR SL L E L Sbjct: 199 PPPKVQSEVIVIEPHGPARLPEAALARTTEQLLRRSFAARRKMLRNSLVGLVPEPELQGL 258 Query: 251 -HQAGIETNLRAENLSIEDFCRIT 273 +AGI R + + + R+ Sbjct: 259 AREAGINLQQRPQEIEPAAWLRLA 282 >gi|307211915|gb|EFN87842.1| Probable dimethyladenosine transferase [Harpegnathos saltator] Length = 306 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 40/293 (13%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ I+ K GQ+ L + I++ + E + ++E+G G GN+T LL A+KV Sbjct: 16 VARQGILFNKDFGQHILKNPLIIQNMVEKAALRPTDVILEVGPGTGNMTIKLLE-KAKKV 74 Query: 74 IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I E D + L+ + +LEI+ D LK D FF++ +AN+PY I + Sbjct: 75 IAYEVDPRLVAELQKRVQGTLYQPKLEIMVGDVLKSDLP-FFDLC-----VANIPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F + P + L+FQ+E ER+ A+ Y RLS+ T + M+ + Sbjct: 129 PLVFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVG 185 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S V+ P P + +T+ AF ++ KTL + K+ +L Sbjct: 186 KNNFKPPPKVESNVVRIEPRNPSPPINYQEWDSLTRIAFLRKNKTLSAAFKQNTVTTMLE 245 Query: 252 QA--------------GIE--------------TNLRAENLSIEDFCRITNIL 276 + + N RA + I DF ++ + Sbjct: 246 KNYKIHCSLNNKVFPDNFDIKQLADHILKKTKAENKRARTMDIPDFIKLLHAF 298 >gi|237737101|ref|ZP_04567582.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817] gi|229420963|gb|EEO36010.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817] Length = 264 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 128/270 (47%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL D +L+KI E S TV+EIG G G LT +LL A+KV+ +E Sbjct: 3 FKHKKKFGQNFLTDQREVLRKIMEVSNVQAEDTVLEIGPGEGALTALLLDT-AKKVVTVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ IL+ +P + ++ +D L+ D + +++AN+PY I + ++ Sbjct: 62 IDRDLEKILRKKFDGNP-KYTLVMNDVLETDLRAYVGAG--TKVVANIPYYITSPIINKL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + ++ QKEV ER+ A+K L++ + +A +F I F P Sbjct: 119 IENRD---VIDEIYIMVQKEVAERVCAKKG-KERSVLTLAVEYYGEAEYLFTIPKEFFTP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----L 249 PKV S + + + ++ K + F +RK L + LG + Sbjct: 175 IPKVDSAFMSIKLYKDNRYINQVDEDTFFKYVKAGFSNKRKNLLNNFSTLGYSKDELRVI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L +A I RAENLSIEDF R+ +I + Sbjct: 235 LAKAEIPETERAENLSIEDFIRLISIFENK 264 >gi|268560678|ref|XP_002646265.1| Hypothetical protein CBG11970 [Caenorhabditis briggsae] Length = 358 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 28/303 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG+GPG +T+ + Sbjct: 5 PLPALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGI 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 L GA ++ V+E D +F P L+ ++ +R+ I DAL+ + + Sbjct: 65 LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPW 124 Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQK 166 + +I NLP+NI + L+ ++ ++ LTL FQ EV +R+ + Sbjct: 125 HDSKLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPI 184 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225 R+S++ + + ++F IS F P P+V V+ F+P P+ E L+K+ Sbjct: 185 ACDTRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 244 Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ F R+K + + LK L + LL + I+ + L +E F + Sbjct: 245 CRQVFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLAEGYN 304 Query: 278 DNQ 280 + Sbjct: 305 EQC 307 >gi|51246027|ref|YP_065911.1| dimethyladenosine transferase [Desulfotalea psychrophila LSv54] gi|62900516|sp|Q6AL71|RSMA_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50877064|emb|CAG36904.1| related to dimethyladenosine transferase [Desulfotalea psychrophila LSv54] Length = 295 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 129/290 (44%), Gaps = 23/290 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +T L +K+ PKK GQNFL+ + I + + + EIG G G LT + Sbjct: 7 TRTDLKKHKLAPKKRFGQNFLVHKQTAEAIVRAGEVGEDDIITEIGVGLGALTVPMAHQ- 65 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYN 128 A+ V IE D ++ P+ + +I D LKV F ++I+ANLPY+ Sbjct: 66 AKHVYGIEIDNGIIKYHEE-EQDLPDNVTLIHQDVLKVGFGDLAEKCGGKLKILANLPYS 124 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I L+F I P + T++ Q+EV +R+ A+ + YG ++L G Sbjct: 125 ISHPLIFKLIEHRDIIP---TATIMLQEEVADRLLAKPGTKEYGIPTILLGCCASIKKKM 181 Query: 189 DISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242 + P F P PK+ S VI F E L ++ + AF +RRKT+ +L Sbjct: 182 VLKPAEFHPRPKIDSAVITVDFTKPPELPEYNKELLSRVVRSAFSQRRKTILNTLSSASF 241 Query: 243 -----------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + E + +AG +LR E LSI+DF R+T + + Sbjct: 242 FFAEKENKAKNKAMTEKTIEKAGFAVSLRPEVLSIQDFVRLTTVFEQEMN 291 >gi|330814914|ref|XP_003291474.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum] gi|325078362|gb|EGC32018.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum] Length = 489 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 146/294 (49%), Gaps = 29/294 (9%) Query: 3 MNNKSH---SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M+NK +L+ I+ + + K+ + QNFL+D NI KI ++SG TVIE+GAGPG Sbjct: 1 MSNKLPPMPTLQEIIRTFGLSAKQQLSQNFLIDKNITDKICKTSGGFKDCTVIEVGAGPG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------- 112 LT+ LLT A+KVI +E D +F+P LK + R+++I + L+VD K Sbjct: 61 GLTRSLLTSEAKKVIAVEMDPRFYPALKMLEDASEGRMKLIMANMLEVDEAKILFENGAE 120 Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + S ++II NLP+N+GT L+ WI + S + Sbjct: 121 FAPWEEKSKVKIIGNLPFNVGTHLMLKWIRQISPREGLYSF-----------GRVPIGTA 169 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKI 225 Y RLSV+ + + + F P PKV + V+ P +NP+ + + + Sbjct: 170 DYSRLSVMVQQSAIPRITYQLPGKAFVPPPKVDAAVVEIEPRINPLGKEPLKNHQYFEFV 229 Query: 226 TQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +E F RRKT+ +K LG G + L + I+ R +N+S++ F +TN D Sbjct: 230 CRELFAHRRKTVSNVIKNLGNGADALLEGIIDPKTRPQNISVDQFVDLTNRYCD 283 >gi|261749284|ref|YP_003256969.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497376|gb|ACX83826.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 257 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 136/262 (51%), Gaps = 10/262 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K Q FL D NI KKI ++ + TV+EIG G G LT+ LLT KV +IE D Sbjct: 5 FFHKKFDQYFLKDKNIAKKIVKNLSFQNYNTVVEIGPGLGILTRYLLT-PWHKVFLIEID 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 ++ L+ S N +II D LK + E+ II N PY I +++LF+ + Sbjct: 64 KKLILFLRKNFSVSKN--QIIHKDFLKWNPEEMNL--KNFAIIGNFPYRISSQILFHILR 119 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + P +FQKEV ERIT+ + + YG LSVL + +F ++ HVFFP P Sbjct: 120 YNQYIP---ECIGMFQKEVAERITSHEGNKTYGILSVLVQTFYEVKYLFTVNKHVFFPIP 176 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TN 258 V S VI I C + L + + AF +RRKTL+ +L + + + + + N Sbjct: 177 NVKSAVISLKRKERKIFCNKDLLFQCVKIAFNQRRKTLKNAL-QYFIKEIPNYYNLPFLN 235 Query: 259 LRAENLSIEDFCRITNILTDNQ 280 RAE LS++DF ++T + + + Sbjct: 236 KRAEQLSVKDFLQLTKEIENRK 257 >gi|309371329|emb|CBX33010.1| hypothetical protein CBG_11971 [Caenorhabditis briggsae AF16] Length = 361 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 28/303 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG+GPG +T+ + Sbjct: 7 PLPALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGI 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 L GA ++ V+E D +F P L+ ++ +R+ I DAL+ + + Sbjct: 67 LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPW 126 Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQK 166 + +I NLP+NI + L+ ++ ++ LTL FQ EV +R+ + Sbjct: 127 HDSKLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPI 186 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225 R+S++ + + ++F IS F P P+V V+ F+P P+ E L+K+ Sbjct: 187 ACDTRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 246 Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ F R+K + + LK L + LL + I+ + L +E F + Sbjct: 247 CRQVFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLAEGYN 306 Query: 278 DNQ 280 + Sbjct: 307 EQC 309 >gi|87302768|ref|ZP_01085579.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 5701] gi|87282651|gb|EAQ74609.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus sp. WH 5701] Length = 286 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 123/268 (45%), Gaps = 16/268 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D +L++I ++ G V+E+G G G LT+ LL ++ IE Sbjct: 5 GHHTRKRFGQHWLTDAAVLERIVAAAELQPGERVLEVGPGRGALTERLLATALGELHAIE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + R ++++ D L++ N+ +++AN+PYNI LL Sbjct: 65 LDRDLVAGLRQHFAG-DERFQLLEGDVLRL------NLPPADKVVANIPYNITGPLLERL 117 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + L LL Q+EVGERI A S + LSV + + P F Sbjct: 118 VGRLDRPLASPYRRLVLLVQQEVGERIRAVAGSSAFSALSVRLQLLAHCRSVCAVPPRCF 177 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-- 250 PSPKV S VI P P L+ + + F RRK LR SL L E+ L Sbjct: 178 QPSPKVMSEVIVIDPLPPSERLEPELAGRLEGLLKRCFAARRKMLRNSLAGLWPEDELSE 237 Query: 251 --HQAGIETNLRAENLSIEDFCRITNIL 276 +AG+ R + LS + + +T L Sbjct: 238 RAERAGVSLRQRPQELSPQRWVELTRQL 265 >gi|115252788|emb|CAK98224.1| putative dimethyladenosine transferase protein [Spiroplasma citri] Length = 282 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 89/274 (32%), Positives = 136/274 (49%), Gaps = 15/274 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + I+ KK GQNFL + + + I +S+ L ++EIG G G LT +L L A K+ Sbjct: 8 MRAEGIVVKKSKGQNFLTNTHFINLIVDSAFDLPNTNILEIGPGMGALTSSIL-LKANKL 66 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLPYNI 129 + +E D L L IIQ D L +D EK F +PI II+N+PY I Sbjct: 67 VCVEIDSTLVEYL--TLKFKDQNLTIIQADILTLDLEKLFLTEFLDNNPISIISNIPYYI 124 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + ++F + P + + L+ QKEVGERI AQ NS +Y LSV+ + + + Sbjct: 125 TSPIIFKLLKIKN--PKVKEIILMMQKEVGERIMAQPNSKNYNSLSVVCQFYSDIEKVSL 182 Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-----R 243 + + F P+PKV S V+ F + P + K + F +RKT+ +L + Sbjct: 183 VGRNNFVPAPKVDSIVLKFKLNKKYPALINDKEFIKFIRMMFATKRKTILNNLAIIVNNK 242 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E++L + NLR+ENLS+ DF + N + Sbjct: 243 TLAEDILLKLNYALNLRSENLSLNDFYLLYNEIK 276 >gi|217076587|ref|YP_002334303.1| dimethyladenosine transferase [Thermosipho africanus TCF52B] gi|217036440|gb|ACJ74962.1| dimethyladenosine transferase [Thermosipho africanus TCF52B] Length = 261 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 14/269 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + L YK+ KK +GQNFL +L I KKI ES+ G TV+EIG G G +T+ L+ G Sbjct: 3 IADYLRQYKLNLKKSLGQNFLTNLEIAKKIVESANVQTGETVLEIGPGAGTITEFLIKKG 62 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A V+ +E D++ PIL D ++ N +I D LK D + ++++N+PY+I Sbjct: 63 AN-VVAVEIDKRLTPIL-DRFNEFEN-FKIYYQDFLKFDMKLL---GENFKVVSNIPYSI 116 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 ++ + + + + L+ QKEVG+R+ A+ L+V+ T + Sbjct: 117 TGMIIKKILFSK-----FSTAVLMVQKEVGDRLLAKPGE-DRSFLTVVVQTFTDIEKVLH 170 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 +S F P P+V S V+ F N +E + F K+RKTL +LK +N Sbjct: 171 VSKGNFVPPPQVDSVVLKFTRKENIYEKYNIEEFWTFVSKCFEKKRKTLLNNLKG-FVKN 229 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L + + LR + LS +DF ++ Sbjct: 230 LDCFSEFDLKLRPQQLSNDDFLKLFEKYK 258 >gi|257068507|ref|YP_003154762.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810] gi|256559325|gb|ACU85172.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810] Length = 295 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 133/284 (46%), Gaps = 15/284 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + ++ + I P K GQNF++D N ++ I +G G V+E+G G G+LT Sbjct: 11 MLLTARDIRELAEAAGIRPSKQRGQNFVMDPNTVRTIVGRAGVEPGQAVLEVGPGLGSLT 70 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF-EKFFNISSP 118 LL G +V+ +E D+ +L +R ++ DAL+V +P Sbjct: 71 LGLLEAGG-EVVAVELDRGLAELLPLTLRARGVQEDRFRLVHADALQVTELPALPGAGAP 129 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++ANLPYN+ T +L + S ++ Q EV +R+TA S YG SV Sbjct: 130 ASLVANLPYNVATPILLTILER---FDSIRSALVMVQSEVVDRLTAGPGSRTYGGPSVKA 186 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKT 236 W +A IS +F+P P V S ++ + H P+ E++ + AF +RRKT Sbjct: 187 AWYGRAVHAGRISRQIFWPVPNVDSALVELVRHEEPLGTAAERETVFAVVDAAFAQRRKT 246 Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 LR +L G E +L AGI+ R E L IE+F I Sbjct: 247 LRAALAGWAGSAARSEQILRGAGIDPGARGETLGIEEFRAIARA 290 >gi|313677281|ref|YP_004055277.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126] gi|312943979|gb|ADR23169.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126] Length = 260 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 140/266 (52%), Gaps = 10/266 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + KK++GQ+FL D NI +KI ES SG ++EIG G G L+ L+ +++ + Sbjct: 3 GVRAKKHLGQHFLKDQNIAQKIVESLSGHKKYQHLLEIGPGTGVLSNFLIDRAEYELLFM 62 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + DQ+ L++ + + II++D L++D ++ + II N PYNI +++ F Sbjct: 63 DVDQESVDYLQNQYPDYKEK--IIKEDFLRIDLGHYYKEA--FGIIGNFPYNISSQIFFK 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + + QKEV ERI A++ S YG LSVL + +F + P+VF Sbjct: 119 VLEYRNQIP---EVVGMIQKEVAERIAAKEGSKTYGILSVLLQAFYEVEYLFSVPPNVFN 175 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKVTS V+ + + C + ++ ++ F RRKTLR +LK + + + Sbjct: 176 PPPKVTSAVLRLKRNETQTLDCDEKLFFRVVKQGFNNRRKTLRNALKTFNLSDEIKSLDL 235 Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281 + RAE L++ DF +TN + + + Sbjct: 236 -LDKRAEQLTVNDFVELTNHIANGES 260 >gi|255082199|ref|XP_002508318.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299] gi|226523594|gb|ACO69576.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299] Length = 326 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 114/244 (46%), Gaps = 13/244 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K +H I K GQ+ L + I+ I E G V+EIG G GNLT LL A Sbjct: 32 KKNATHGGIQFLKSYGQHILKNPMIVNSIVEKGGVKSTDVVLEIGPGTGNLTMRLLET-A 90 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI IE D + L+ P+ L II D LKVD F +AN+PY Sbjct: 91 KKVIAIEFDPRMVLELQRRVQGTPHQQNLTIISGDFLKVDLPYF------DVCVANVPYQ 144 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L+F +S P + + TL+FQ+E R+ Q P Y RLSV T + T + Sbjct: 145 ISSPLVFKLLSHR---PMFRAATLMFQREFAMRLCVQPGDPLYCRLSVNTQLLARTTHLL 201 Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + + F P PKV S+V+ P + IPC + + + FG++ KTL + Sbjct: 202 KVGKNNFRPPPKVDSSVVRIEPRPISTIPCNFKEWDGLVRLCFGRKNKTLGGIFRTKTVL 261 Query: 248 NLLH 251 LL Sbjct: 262 ELLE 265 >gi|254422682|ref|ZP_05036400.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335] gi|196190171|gb|EDX85135.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335] Length = 302 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 13/271 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L +L +I + +G V+EIG G G LTQ LL A KV+ +E Sbjct: 26 GKRARKRFGQHWLCSDQVLNQIVRAGELAEGDLVLEIGPGQGVLTQRLLDTSA-KVLAVE 84 Query: 78 KDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTR 132 D+ L D I+ + +I+ D L+++F++ F + P +++AN+PY I Sbjct: 85 IDRDLCLQLSDQFIADMASGQFRLIESDFLELNFDQALLDFELDRPNKVVANIPYYITAP 144 Query: 133 LLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 +L + P + ++ LL QKE+ +R+ AQ + G L++ + + + + Sbjct: 145 ILEKLLGTMRSPNPFPFSNIVLLVQKEISDRLCAQPGTRANGALTIRVQYLAECEEICLV 204 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGEN- 248 P F P+PKV S V+ P P L ++ + F ++RK LR +L+ + + Sbjct: 205 PPSAFKPTPKVDSAVVRLRPRPFLTPAEDPIFLSQLVKLGFSQKRKMLRNNLQSIVDRDT 264 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNIL 276 LL + RAE L + ++ ++N + Sbjct: 265 LSALLESLSLNPQTRAEGLGVGEWVALSNAV 295 >gi|162452719|ref|YP_001615086.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56'] gi|161163301|emb|CAN94606.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56'] Length = 276 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 92/274 (33%), Positives = 135/274 (49%), Gaps = 13/274 (4%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ +L + PKK GQNFL+D++ ++IAE++ + +G VIEIGAG G LT+ LL Sbjct: 2 AIAELLRTRGLSPKKGFGQNFLVDVDAARRIAEAATTTEGGAVIEIGAGLGALTRPLLDR 61 Query: 69 GARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDF-EKFFNISSPIRIIANL 125 A V+ IE+D+ PIL++ + RL +++ DA +VD+ + P + NL Sbjct: 62 -ATHVVAIERDRDLVPILREQLAGPIEEGRLTLLEADAAQVDWVGALSGHARPHAVAGNL 120 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+I RLL A T + + Q EV +R+ A S YG LSV Sbjct: 121 PYHITGRLLEQ---ATTVAHQIDRAVFMVQLEVADRLVAAPGSADYGALSVFVQAAFDVR 177 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + F+P P+V S V+ P ++ + + AF RRKTLR + K L Sbjct: 178 RLLIARAGAFYPRPEVDSAVVVLTPWRPRRAEETDAFRAAVRAAFSARRKTLRNAWKNLY 237 Query: 246 G------ENLLHQAGIETNLRAENLSIEDFCRIT 273 G E AGI + R E LS+E F RI Sbjct: 238 GWSSQELERHAKDAGISLDARGETLSVEAFARIA 271 >gi|195108513|ref|XP_001998837.1| GI24187 [Drosophila mojavensis] gi|193915431|gb|EDW14298.1| GI24187 [Drosophila mojavensis] Length = 306 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRIHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK D FF++ IA Sbjct: 68 LER-AKKVIACEIDTRLAAELQKRVQGTPMQPKLQVLIGDFLKADLP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPINFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQ 252 +L + Sbjct: 238 NSVMEMLEK 246 >gi|325971816|ref|YP_004248007.1| ribosomal RNA small subunit methyltransferase A [Spirochaeta sp. Buddy] gi|324027054|gb|ADY13813.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta sp. Buddy] Length = 292 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 133/287 (46%), Gaps = 15/287 (5%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + ++ +L ++ K GQNFL+ + +KI TV E+G G G +T + Sbjct: 8 DSPIAITALLKEEELSMSKKFGQNFLISRAVREKIVALLDVQQAQTVWEVGPGIGAITSL 67 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL G KV E D F IL + + +I DALK +P R+ N Sbjct: 68 LLEKG-TKVTAFEIDHGFCRILSEQAFADELSFRLIAGDALKTLPLTLGQEGAPDRLCGN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+G+ ++ + +D PP + QKEV +R+ A +S + S+L + Sbjct: 127 LPYNVGSVVIAKVLESDYRPPV---MVFTLQKEVVDRLCASPDSKDWSSFSMLAQMDYEV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKIT-QEAFGKRRKTLRQSL- 241 F IS F+P PKVTS+ + F +P L L + ++ F +RRKT + +L Sbjct: 184 KPAFSISSGSFYPPPKVTSSTVVFTLRPQSLVPSQLRHLFLLVIRDLFAQRRKTAKNNLL 243 Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + G E LL ++G++ + RAE L DF ++ L+ Q Sbjct: 244 SGKIAAQVGKEGVEELLRRSGVDASKRAEALVWSDFIALSESLSSYQ 290 >gi|297200276|ref|ZP_06917673.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] gi|197709390|gb|EDY53424.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] Length = 296 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N ++KI ++G D V+E+G G G+LT LL Sbjct: 12 PADIRELAAALGVRPTKQRGQNFVIDANTVRKIVRTAGVRDDDVVVEVGPGLGSLTLALL 71 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L +R ++ DA+ V +P ++ Sbjct: 72 ET-ADRVTAVEIDDVLASALPATIAARLPDRADRFALVHSDAMHVTE---LPGPAPTALV 127 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAAPPGSKVYGVPSVKANWYA 184 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238 + I +VF+P+P V S ++ PI + + AF +RRKTLR Sbjct: 185 EVKRAGSIGRNVFWPAPNVDSGLVALTRRTEPIRTTASKREVFAVVDAAFAQRRKTLRAA 244 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + E L AG+ R E+L++E+F RI Sbjct: 245 LAGWAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283 >gi|154249153|ref|YP_001409978.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1] gi|154153089|gb|ABS60321.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1] Length = 261 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 83/268 (30%), Positives = 128/268 (47%), Gaps = 18/268 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQNFL +KI S T++EIGAG G LT L GA V IE D + Sbjct: 4 KKSLGQNFLSSEIYAEKIVGLSNVEKNDTILEIGAGAGTLTVALAKTGA-TVFAIEIDNR 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 PILK+ ++ N ++II +D L++D N + I+N+PY I +L + + Sbjct: 63 MEPILKERLEKYDN-VKIIFEDFLEMDISFLPNG---YKCISNIPYYITAPILKKLLFTN 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + LT++ QKEVGER+ + S + G L+V+ + + F P+P V Sbjct: 119 -----FSMLTIMMQKEVGERLLEKPGSSNRGFLTVVLQTVADVEKLLLVPKSAFVPNPDV 173 Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLG-----GENLLHQA 253 S V+ L + +F ++RKT+ +LK +G ENLL Sbjct: 174 DSIVLKITKKKEFPFSNLSEFESYWTFVSNSFSQKRKTISNNLKSMGMAKEEIENLLKNL 233 Query: 254 GIETNLRAENLSIEDFCRITNILTDNQD 281 I+TN R E LS E+F + ++ ++ Sbjct: 234 NIKTNARPEELSTEEFLSLWRMVYGKEN 261 >gi|159900605|ref|YP_001546852.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC 23779] gi|159893644|gb|ABX06724.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC 23779] Length = 288 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 23/291 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ L+ + P K MGQNFL+D LK E + V+E+G G G Sbjct: 1 MNPYTDPSRVRGALNSIGVRPSKSMGQNFLIDPTPLKLALEHAEVNPNDVVVEVGPGLGV 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-----FNI 115 LT LL A VI IE D + L+ ++ P L I++ D L++ Sbjct: 61 LTWELL-NAAGHVISIELDPRLAGRLRTEFAERP--LTIVESDVLEIAPSAMLAAAGLPA 117 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 + +++AN+PY I + LL +++ D+ P + +L Q EV +RITA+ L+ Sbjct: 118 DTSYKLVANIPYAITSPLLRHFLEGDSPPSL---MMVLMQWEVADRITAKPGDL--SILA 172 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRR 234 A ++ + F P+P V S ++ N +P ++L K+ + F + R Sbjct: 173 HSVQLYATAEIIARVPAASFLPAPAVDSALVLMRRRATNAVPTAPKALFKVIRAGFSQAR 232 Query: 235 KTLRQSL------KRLGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276 K L SL + G E +L QA I+ NLRAE L++E + R+T L Sbjct: 233 KKLINSLAGGLAGQGFGKEQVLAAIVQAEIDPNLRAEVLTLEQWARLTETL 283 >gi|289523105|ref|ZP_06439959.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503648|gb|EFD24812.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 278 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 138/268 (51%), Gaps = 11/268 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK +GQNFL+D NI + + E++ + V+E+G G G LT+ +LT R + VIE Sbjct: 11 GHKAKKSLGQNFLVDPNIARWMVENAALNEDDVVLEVGPGKGMLTKEILTSQCRFLHVIE 70 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ P L+ I NR+ +I D L ++ ++ P +++AN+PYNI T L++ Sbjct: 71 IDKTLAPFLEPIVKTSKNRMSVIWGDVLTINLKEL--SPPPTKVLANIPYNITTPLIWQI 128 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + P L L+ Q E+ +R+ A+ + + + KA ++ + P+VF+P Sbjct: 129 LE-HLVPLGTRELLLMLQLELAQRLCAKPKTKDRSPIGITIEKMGKAQIVKKVPPNVFWP 187 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------RLGGENL 249 +PKV S ++H I + + +++ + AF +RRKTL +L + L Sbjct: 188 TPKVESAIVHIIIDKDLKLASDHTWRRLLRVAFARRRKTLANNLSCVYDFFKDKDKTSKL 247 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L + T +RAE L+++D+ + ++ Sbjct: 248 LDDLKLPTTVRAEELTVDDWHHLYEFIS 275 >gi|194745790|ref|XP_001955370.1| GF16271 [Drosophila ananassae] gi|190628407|gb|EDV43931.1| GF16271 [Drosophila ananassae] Length = 306 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + T + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKTRIHTEVQKQGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK + FF++ IA Sbjct: 68 LE-KAKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQ 252 +L + Sbjct: 238 SSVIEMLEK 246 >gi|206895498|ref|YP_002247582.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM 5265] gi|206738115|gb|ACI17193.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM 5265] Length = 279 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 15/277 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + +L + I PKK +GQ+FL+ ++ KI ++G +EIGAG G LT L Sbjct: 16 DIPQLLKQFSISPKKTLGQSFLICDHVADKIVAAAG--HDDVAVEIGAGTGMLTVRLA-S 72 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 + VI IE DQ+ + I++ PN + + + D LK + ++ NLPY Sbjct: 73 HYKNVIAIEIDQRLKALHNMITADFPNVVFVYE-DFLKW----IPRPTEIPTVVGNLPYY 127 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T +L +++ + QKE+G R+ A S YG LSV TK M+F Sbjct: 128 ITTPILEKVFFQMKP----KTMVFMVQKELGARMVANPGSKTYGALSVFVQSFTKPEMLF 183 Query: 189 DISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 ++ + F+P+P+V S V+ + E L+ + + AF +RRK LR LK+ Sbjct: 184 HVTKNCFYPAPEVDSVVVKLEGIYGYEEVVDPEVLEHVVKRAFQQRRKMLRSGLKKEPLL 243 Query: 248 NLL-HQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 +AGI+T+LR E +++E + R L Q+ A Sbjct: 244 LKKAEEAGIDTSLRPEQITVEQYVRWA-TLVKRQNTA 279 >gi|195394465|ref|XP_002055863.1| GJ10534 [Drosophila virilis] gi|194142572|gb|EDW58975.1| GJ10534 [Drosophila virilis] Length = 306 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 13/262 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRIHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK D FF++ IA Sbjct: 68 LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKADLP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQA-GIETNLRAENL 264 +L + + +LR E + Sbjct: 238 NSVIEMLDKNYKLYRSLRNEQV 259 >gi|254444818|ref|ZP_05058294.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235] gi|198259126|gb|EDY83434.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235] Length = 271 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 14/276 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + +L PKK +GQNFL+D NI++K E + G V+EIG G G LT Sbjct: 1 MPLSPSQTRELLEQLGHRPKKQLGQNFLIDGNIVRKSLELAQVTPGDHVVEIGPGLGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + LL GA V +E D + +++ PN L +I+ DAL + +I+ Sbjct: 61 RALLDAGA-IVHAVEFDPTLGAHVARLAADSPN-LHLIKGDALDHPLGDLPPDTE-YKIV 117 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I T W++A +TL+ QKE +R A+ + +G +S+ Sbjct: 118 ANLPYAISTP----WMAAVLESQLPSVMTLMLQKEAAQRYAAKAGTKQFGAISIFLHAAF 173 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 D+S F+P P V ST++H P ES+ ++ +E F +RRK + L+ Sbjct: 174 DILPGHDVSGSCFYPKPDVGSTLLHLRRKTTPHRFHPESI-QLIREVFQQRRKQISSLLR 232 Query: 243 RLGGENL------LHQAGIETNLRAENLSIEDFCRI 272 + + L GI+ R E + E + ++ Sbjct: 233 KAKTDAATRWLNSLTNIGIDPTARPEQIDAEKWIQL 268 >gi|115529417|ref|NP_001070237.1| dimethyladenosine transferase 1, mitochondrial [Danio rerio] gi|115313290|gb|AAI24403.1| Zgc:153625 [Danio rerio] gi|182891088|gb|AAI65534.1| Zgc:153625 protein [Danio rerio] Length = 269 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 124/251 (49%), Gaps = 15/251 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ I+ Y + +K + QNFLLD + KI +G+L+ V E+G GPG LT+ + Sbjct: 14 PLPTIGEIIKLYNLKAQKQLSQNFLLDTRLTDKIVRQAGNLNNAHVCEVGPGPGGLTRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L GA ++V+EKD +F P L+ +S P R+ I Q D L E+ F + Sbjct: 74 LKAGAADLLVVEKDMRFIPGLQLLSEAAPGRIRIAQGDILAYKLERRFPANITKTWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFW-----ESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+N+ T L+ W+ + LTL FQKE ER+TA S Sbjct: 134 PNLHIIGNLPFNVSTPLIIKWLEQMSNRTGIFMFGRTRLTLTFQKEAAERLTASTGSRQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLSV+ + T F I F P P V V+HF P P I + ++KI + AF Sbjct: 194 SRLSVMAQYLTTVKSCFTIPGQAFVPKPNVDVGVVHFTPLAQPQIQQPFKLVEKIVKNAF 253 Query: 231 GKRRKTLRQSL 241 RRK R+ L Sbjct: 254 QFRRKHCRRGL 264 >gi|302338023|ref|YP_003803229.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293] gi|301635208|gb|ADK80635.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293] Length = 293 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 124/284 (43%), Gaps = 14/284 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + SL L + +K GQNFL+ + KI + V EIG G G +T M Sbjct: 9 DSPASLAAFLEARGLSMQKRFGQNFLVSPGVRSKIVKLLELSKDDHVWEIGPGLGAMTHM 68 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 +L L R + V E D+ F L++ S E+++ D +K + + P I N Sbjct: 69 VLGLC-RNITVFEIDRGFISFLREHFSMVEG-FELVEGDVMKNWQPAYTRFAPPSLIFGN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN + + I A P + QKEV ER++A + YG S++ + Sbjct: 127 LPYNCAASFIGDLIEAGANP---RKMVFTIQKEVAERMSASPGTKRYGAFSMICAFSWDV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-- 242 + I P FFP P+VTS +I +PH ++ F RRKT+R SL Sbjct: 184 RIAGIIKPGSFFPVPEVTSAIIEMVPHHRFSGLSAGLASTFAKDLFANRRKTVRNSLSGG 243 Query: 243 ----RLGGENLL---HQAGIETNLRAENLSIEDFCRITNILTDN 279 RLG +L +AGI R E +S+E + LTD Sbjct: 244 ILAARLGKNAILNAAEEAGIGLGQRGEEVSVEMVAKACGHLTDK 287 >gi|15616761|ref|NP_239973.1| dimethyladenosine transferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386908|sp|P57241|RSMA_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|25286065|pir||C84946 dimethyladenosine transferase [imported] - Buchnera sp. (strain APS) gi|10038824|dbj|BAB12859.1| dimethyladenosine transferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 273 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 93/267 (34%), Positives = 139/267 (52%), Gaps = 9/267 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K +P K GQNFL++ + +K I + T++EIG G LT+ + L ++IVIE Sbjct: 7 KHLPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAALTKPMCELL-EELIVIE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136 DQ +LK S ++L + +AL +F F+ IRI NLPYNI T L+ Sbjct: 66 IDQDLLFLLKKRS--FYSKLIVFYQNALNFNFLNLFHKKKQLIRIFGNLPYNISTSLIIF 123 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + QKEV ER+ + + YGRLS+++ + ++ ++SP F Sbjct: 124 LFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKILLNVSPEDFR 180 Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P PKV S I+ PH N + L IT++AF RRK LR SLK L E L + Sbjct: 181 PIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLFSEKELIKLE 240 Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281 I +NLRAEN+S+ +C++ N L + Sbjct: 241 INSNLRAENVSVSHYCKLANYLYKKSN 267 >gi|220904363|ref|YP_002479675.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868662|gb|ACL48997.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 279 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 135/279 (48%), Gaps = 12/279 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 H K I++H KK +GQ+FL + +IA +IEIG GPG LT+ + Sbjct: 6 PHMKKNIVTHTP-RAKKSLGQHFLRREDTCCRIAALIAPAAQDRIIEIGPGPGALTRAIE 64 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 +++++EKD+ + + + + + I DALK + + + P +II NLP Sbjct: 65 ATPHSRLLLLEKDRHWAAERQRLGGANTQAVLI---DALKFAWRRI-SPEEPWKIIGNLP 120 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YN+ + L+++ S T W+ + QKEVG+R+ A + HYG LSV + M Sbjct: 121 YNVASPLIWDIFSRST---GWQRAAFMVQKEVGQRLAAHPGTGHYGALSVWVQSYARPRM 177 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244 F + P F P PKV S V+ F P N P E L ++ + F +RRK L +R Sbjct: 178 EFVVGPGAFSPPPKVDSAVLSFEPLPANERPAHPELLSRLLRICFQQRRKQLGGVFRRAA 237 Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 G E LH A I+ LR E L+ DF RI D Sbjct: 238 QPGLEKSLHDACIDPALRPEALTCSDFQRIAAFWASQLD 276 >gi|58385178|ref|XP_313763.2| AGAP004465-PA [Anopheles gambiae str. PEST] gi|55240843|gb|EAA09266.2| AGAP004465-PA [Anopheles gambiae str. PEST] Length = 306 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 12/248 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + ++ I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRVHDGVAKQGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L +KV+ E D + L+ +L+I+ D LK D FF+I +A Sbjct: 68 LE-KVKKVVACEIDTRLVAELQKRVQGTHMQPKLQILIGDVLKTDLP-FFDIC-----VA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + +F + PF+ L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NMPYQISSPFVFKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K+ Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQ 237 Query: 244 LGGENLLH 251 L Sbjct: 238 TTVLTTLE 245 >gi|125774831|ref|XP_001358667.1| GA11224 [Drosophila pseudoobscura pseudoobscura] gi|195145334|ref|XP_002013651.1| GL24250 [Drosophila persimilis] gi|54638406|gb|EAL27808.1| GA11224 [Drosophila pseudoobscura pseudoobscura] gi|194102594|gb|EDW24637.1| GL24250 [Drosophila persimilis] Length = 306 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 128/304 (42%), Gaps = 40/304 (13%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRVHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRPTDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+I+ D LK + FF++ IA Sbjct: 68 LE-KAKKVIACEIDTRLAAELQKRVQATPMQPKLQILIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPIFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQ-----------------------AGI-----ETNLRAENLSIEDFCRITNI 275 +L + GI LRA ++ I+DF R+ Sbjct: 238 SSVIEMLEKNYKVFRSLRNEPLEEGFNMQEKVIGILEELEMATLRARSMDIDDFMRLLRA 297 Query: 276 LTDN 279 Sbjct: 298 FNSK 301 >gi|224090635|ref|XP_002188905.1| PREDICTED: putative putative dimethyladenosine transferase [Taeniopygia guttata] Length = 305 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 19/260 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I + + ++E+G G GNLT +L +KVI E D + Sbjct: 27 GQHILKNPLVVNSIIDKAALRRTDVILEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 85 Query: 86 LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ N+LEI D LK D F +ANLPY I + +F + Sbjct: 86 LQKRVQGTCLANKLEIKVGDILKTDLPFF------DACVANLPYQISSPFVFKLL---LH 136 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E R+ A+ S Y RLS+ T + + + + F P PKV S Sbjct: 137 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 196 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETN 258 +V+ P P P + + + AF ++ KTL + K E LL + + Sbjct: 197 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDRNYQVHCSLHNT 256 Query: 259 LRAENLSIEDFCRITNILTD 278 EN I + +I +L D Sbjct: 257 EIPENFKIAE--KIQTVLKD 274 >gi|194906638|ref|XP_001981404.1| GG11635 [Drosophila erecta] gi|190656042|gb|EDV53274.1| GG11635 [Drosophila erecta] Length = 306 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 18/285 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRIHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK + FF++ IA Sbjct: 68 LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E ER+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITNI---LTDNQDIAI 284 +L + + +LR E +ED ++ + + + QD+A+ Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PVEDDFKMQDKVISILEEQDMAV 280 >gi|46399670|emb|CAF23119.1| putative dimethyladenosine transferase [Candidatus Protochlamydia amoebophila UWE25] Length = 256 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 128/259 (49%), Gaps = 13/259 (5%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 ++D NI++KI +S G V+EIG GPG+LTQ +L + A V+ +EKD LK Sbjct: 1 MIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAH-VVAVEKDFVLARELK-R 58 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 +LEI +D L E+ ++IANLPY++ T +L + Sbjct: 59 FQTPSKQLEIFCEDILMFSVEEELQSRLRDDQKAKVIANLPYHLTTPILAEMVVRRK--- 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + SLT++ Q+EV R+TA Y ++ + +K F +S + F+P+PKV S + Sbjct: 116 LFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKVDSAI 175 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRA 261 + P + KIT+ AF +RRK LR SLK L N L G R Sbjct: 176 VVLELKEPPPNIDAQVFFKITRTAFEQRRKMLRASLKSLFDPSKISNALEIIGQNPQARP 235 Query: 262 ENLSIEDFCRITNILTDNQ 280 E LS+EDF ++ + L ++ Sbjct: 236 EVLSLEDFIKLYHELYSSE 254 >gi|157872123|ref|XP_001684610.1| ribosomal RNA adenine dimethylase family protein [Leishmania major strain Friedlin] gi|68127680|emb|CAJ05804.1| putative ribosomal RNA adenine dimethylase family protein [Leishmania major strain Friedlin] Length = 374 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 13/235 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL A+KVI E Sbjct: 68 GIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLLQT-AKKVIAFE 126 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+II+ + L+ DF +F + +AN+PY I + L+F Sbjct: 127 IDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPRF------DKCVANVPYAISSALVF 180 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P ++ L+FQ+E R+ AQ S Y RLSV + + + + IS + F Sbjct: 181 KLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARCSHLMKISKNSF 236 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 P PKV S+VI P P E + + F ++ K + L Sbjct: 237 NPPPKVESSVIRLDPKYPPPDVDFEEWDGLVKMLFSRKNKKSSSIFRTKAAAQAL 291 >gi|256826937|ref|YP_003150896.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641] gi|256583080|gb|ACU94214.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641] Length = 296 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 16/277 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + + +L + + KK +GQ+FL++ ++++I + + ++E+G G G LT L Sbjct: 13 SVRATRAVLEAHGLATKKALGQHFLINEGVVRRICDVAELSCEDDILEVGPGIGTLTVAL 72 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L AR+V IE+D +L + +R E+I+ DAL V + +P +++ANL Sbjct: 73 LH-CARRVAAIERDVDLPAVLAETCDFAHDRFELIRCDALSVGPDDL--SFAPNKLVANL 129 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY + L+ + +S T++ Q EV +R+ A + +YG +V Sbjct: 130 PYAVAATLVLDVFERFN---SIQSATVMVQSEVADRMAAHPGTKNYGAFTVKLALFAHPV 186 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 F ++P FFP P+V STVI N P + + AF RRKT+ S + Sbjct: 187 SRFTVAPTNFFPPPRVQSTVIRLDRAEQDNLSPDERRCARMMADAAFATRRKTVANSCRA 246 Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRI 272 + +L + I+ R E+LS+E+F + Sbjct: 247 YFAGRVDAASIDQVLAASNIDPRRRGESLSLEEFKCL 283 >gi|326433493|gb|EGD79063.1| dimethyladenosine transferase [Salpingoeca sp. ATCC 50818] Length = 310 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 123/288 (42%), Gaps = 34/288 (11%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 ++ K GQ+ L + ++ I + + TV+EIG G GNLT LL A K+I Sbjct: 24 RRTGVLFNKDFGQHILKNPLVVTGIIDKANIRSSDTVLEIGPGTGNLTIKLLE-KAGKLI 82 Query: 75 VIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 E D + L S+ + ++L ++ DA+K F +AN+PY I + Sbjct: 83 AYEVDSRLADELVKRVSKTMYKSKLHLVLGDAIKNPLPAF------DVCVANMPYQISSP 136 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +F + P + L+FQ+E R+ A+ HY RLSV + + +S Sbjct: 137 FVFKILKHR---PLFRCAVLMFQREFALRLVAKPGEEHYCRLSVNAQLLSNIEHVMKVSK 193 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-- 250 + F P PKV S+V+ +PH L + + AF ++ +TL + K+ G LL Sbjct: 194 NNFRPPPKVESSVVRIVPHRPAPDVDLSEFDGLLRIAFERKNRTLAAAFKKKGVVALLLQ 253 Query: 251 --HQAGIET------------------NLRAENLSIEDFCRITNILTD 278 Q G E + R + L++ DF R+ D Sbjct: 254 NFKQLGGEPPEDFKQFIVDVLTESDYASKRPQQLAVADFLRLLKAFND 301 >gi|322800097|gb|EFZ21203.1| hypothetical protein SINV_11803 [Solenopsis invicta] Length = 353 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 26/298 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ IL Y++ K + QNFL+D N+ KI + +G+L G V+EIG GPG LT+ + Sbjct: 8 PLPTIRDILKIYRLNAIKRLSQNFLMDHNLTDKIIKKAGNLAGSQVLEIGPGPGGLTRSI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------- 113 L +++V+EKD++F P L+ ++ +++II D+ L + E F Sbjct: 68 LRRVPERLVVVEKDERFKPTLEMLAESFSAINGKMDIIYDNILNTNIESLFPEEKKRTWN 127 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168 + I +I NLP+++ T L+ W+ A W +TL FQKEV ER+ AQ Sbjct: 128 DKPPDIFLIGNLPFSLSTHLIIKWLHAIAEQRGPWAFGRTKMTLTFQKEVAERLVAQPFG 187 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227 RLSV+ T T+ F I F P P V V+ F P + P + +K+ + Sbjct: 188 EQRCRLSVMAQAWTFPTLRFIIPGKAFVPKPDVDVGVVSFAPLVKPRTQHDFKFFEKVVR 247 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAG--------IETNLRAENLSIEDFCRITNILT 277 F R+K + ++ L + G +E LR L++E+ R+ Sbjct: 248 HLFSFRQKYSIRCIETLFPKERCKDLGLMMYKLADLEPTLRPTQLTVEEVDRLATAYK 305 >gi|195449214|ref|XP_002071976.1| GK22567 [Drosophila willistoni] gi|194168061|gb|EDW82962.1| GK22567 [Drosophila willistoni] Length = 306 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 13/262 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + I+ + E + V+EIG G GN+T + Sbjct: 8 KKSRVHNEVQKQGIVFNKDFGQHILKNPLIITAMLEKAALRPTDVVLEIGPGTGNMTVRI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L ++KVI E D + L+ P +L+++ D LK + FF++ IA Sbjct: 68 LE-KSKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQA-GIETNLRAENL 264 +L + + +LR E L Sbjct: 238 NSVIEMLEKNYKLYRSLRNEQL 259 >gi|296140913|ref|YP_003648156.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM 20162] gi|296029047|gb|ADG79817.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM 20162] Length = 310 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 20/285 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF+ D N ++KI ++G +E+G G G+L + L Sbjct: 15 PAEIRGLAGQLSVRPTKQLGQNFVHDPNTVRKIVAAAGVRPDDIALEVGPGLGSL-TLAL 73 Query: 67 TLGARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKF-----FNISS 117 A V +E D L D + + L +I +DALKV E+ + + Sbjct: 74 LDAAAAVTAVEIDPVLAQQLPQTVGDRAPELAGNLTVIGEDALKVTGEQLVAATGRDRGA 133 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P ++ANLPYN+ +L + ++ P ++ ++ Q EV +R+ A S YG SV Sbjct: 134 PTVLVANLPYNVAVPVLLHLLAE---VPTLRTVLVMVQLEVADRLAAGPGSRVYGVPSVK 190 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRK 235 + + VF+P P V S ++ H + L AF +RRK Sbjct: 191 AAYYGAVRKAGTVGRAVFWPEPNVESGLVRIDLHDPADRPDVPRADLWAAIDGAFAQRRK 250 Query: 236 TLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 TLR +L G L AG++ R E L+++ F I Sbjct: 251 TLRAALSGWAGSPALAEEALVAAGVDPRERGEKLTVDQFAAIARA 295 >gi|227832678|ref|YP_002834385.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC 700975] gi|262182836|ref|ZP_06042257.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC 700975] gi|227453694|gb|ACP32447.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC 700975] Length = 280 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 120/276 (43%), Gaps = 16/276 (5%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + + P K +GQNFL D N +++I ++ V+E+G + L Sbjct: 11 EIRELAAELDVTPTKKLGQNFLHDPNTIRRIVAAADLSPEDRVVEVGP-GLGSLTLGLLG 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSPIRIIAN 124 V +E D + L D + L +++ DAL V+ + P ++AN Sbjct: 70 EVEHVTAVEIDPRLAGKLPDTVAARAADFADRLSVVEKDALTVEAGEL---GEPTALVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EV ER+ A S YG SV + Sbjct: 127 LPYNVAVPVLLHLLE---VYPSIRRVLVMVQLEVAERLAAGPGSKVYGIPSVKASFYGPV 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 I +VF+P+PK+ S ++ L + AF +RRKTLR +L Sbjct: 184 RQAGTIGKNVFWPAPKIESGLVRIDCTRPFDEALRPRLFALIDAAFAQRRKTLRAALAGF 243 Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E L A I+ LR E L +EDF R+ + Sbjct: 244 YGSAAAAEEALRTADIDPRLRGEKLGVEDFVRLAEV 279 >gi|302336213|ref|YP_003801420.1| dimethyladenosine transferase [Olsenella uli DSM 7084] gi|301320053|gb|ADK68540.1| dimethyladenosine transferase [Olsenella uli DSM 7084] Length = 347 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 27/296 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + K++L + + K +GQNFL+ ++ +I + V+E+G G G LT + Sbjct: 37 NPRATKSVLDGFGLCTKHRLGQNFLVSDAVIGRILGLAELGTSDVVLEVGPGIGTLTVAM 96 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----------I 115 L L A V +E D+ P+L ++ R ++ DAL VD Sbjct: 97 LPL-AGAVCSVEADRSLAPVLAHTCARDSERFSLVLGDALDVDGASLSAELASLGIDGLP 155 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 +SP ++++NLPY + ++ P ++ Q EV +R++A+ S YG + Sbjct: 156 ASPNKLVSNLPYQVAATIVLKAFQEM---PSIRRAVVMVQSEVADRMSARPGSRAYGGYT 212 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK--------ITQ 227 G T F++ P F P+P V S V+ P E L Sbjct: 213 AKLGLYGTVTGRFEVGPGNFMPAPHVDSAVVRIDRVPACDPQTAEPLDTGRLASCVVAID 272 Query: 228 EAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 AF +RRKT+R S+ G E L +A IE +RAE LS DF R+ L Sbjct: 273 AAFAQRRKTIRNSMAASGFERDALDVALAEASIEPTVRAEALSTADFVRLDAALRS 328 >gi|86608465|ref|YP_477227.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|119365854|sp|Q2JMR8|RSMA_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86557007|gb|ABD01964.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 282 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 125/271 (46%), Gaps = 19/271 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIEIGAGPGNLTQMLLTLGARKVI 74 P+K GQ++L D + + I ++ D V+EIG G G LT+ LL G +V+ Sbjct: 4 PRKRFGQHWLKDPAVHEAILRAAQLNDLERGADPTWVLEIGPGTGQLTRRLLAQGV-QVV 62 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +E D+ +L+ + P R +++ D + P ++AN+PYN+ +L Sbjct: 63 AVEIDRDLCRLLRKRFADQP-RFHLVEGDF-----LRLPLPPQPRLLVANIPYNLTGSIL 116 Query: 135 FNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + P +E + LL QKE+ ER+ A S YG LS+ T + ++ + P Sbjct: 117 EKVLGSPAQPVRQFERIVLLVQKELAERLQAGPGSKAYGALSLRTQYLADCELICRVPPT 176 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGEN---- 248 F P+PKV S VI P P P + ++ F RRK L +L L Sbjct: 177 AFKPAPKVESAVIRLTPRPAPTPVRDPCWFNHLLRQGFSTRRKKLVNALGSLVEREVVAA 236 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L Q + + RAE L + + ++++L + Sbjct: 237 ALAQLRLNPDARAEELDLPHWLALSDLLLEK 267 >gi|91762164|ref|ZP_01264129.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1002] gi|91717966|gb|EAS84616.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1002] Length = 262 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 94/263 (35%), Positives = 148/263 (56%), Gaps = 9/263 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK +GQNFL+D +L+KI + + V+EIG G GNLT +L +K+ V+EK Sbjct: 3 IKAKKSLGQNFLIDREVLEKIVSITDITNKE-VLEIGPGSGNLTTYILKKKPKKLYVVEK 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D +LK+ + ++II DD LKV + + + NLPYNI T +L WI Sbjct: 62 DDDLAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI 116 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +++SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+ + DI P F P Sbjct: 117 LNIGSNFWFDSLVLMFQKEVADRIISKFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPR 176 Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGI 255 PK+ S+++ F P N ++L+KIT+ F +RRK L++ ++ G+ + + GI Sbjct: 177 PKIDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFGI 236 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + NLR +NL E + ++ D Sbjct: 237 DLNLRPQNLEPEVYFKLVKEYED 259 >gi|195036390|ref|XP_001989653.1| GH18676 [Drosophila grimshawi] gi|193893849|gb|EDV92715.1| GH18676 [Drosophila grimshawi] Length = 306 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 12/249 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRIHHEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK + FF++ IA Sbjct: 68 LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLSV T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSVNTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQ 252 +L + Sbjct: 238 NSVMEMLEK 246 >gi|282853600|ref|ZP_06262937.1| dimethyladenosine transferase [Propionibacterium acnes J139] gi|282583053|gb|EFB88433.1| dimethyladenosine transferase [Propionibacterium acnes J139] gi|314922156|gb|EFS85987.1| dimethyladenosine transferase [Propionibacterium acnes HL001PA1] gi|314965239|gb|EFT09338.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA2] gi|314982376|gb|EFT26469.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA3] gi|315092583|gb|EFT64559.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA4] gi|315093999|gb|EFT65975.1| dimethyladenosine transferase [Propionibacterium acnes HL060PA1] gi|315104569|gb|EFT76545.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA2] gi|327329529|gb|EGE71289.1| dimethyladenosine transferase [Propionibacterium acnes HL103PA1] Length = 298 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 22/287 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ I + P K GQNF+ D N +++I + VIE+G G G+LT L Sbjct: 8 NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRI 121 L GA +V+ IE D+ L D ++ RLE++ DAL V K + P + Sbjct: 68 LETGA-EVVAIEIDEVLANQLPDTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTAL 123 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 124 VANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWY 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP------CCLESLKKITQEAFGKRRK 235 +AT + ++ P VF+P P V S ++ +P + ++ AF RRK Sbjct: 181 AEATRVGNVPPTVFWPVPNVDSGLVRITRRRSPHVDGRNPRVTRSQVFRVVDAAFASRRK 240 Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 241 MLRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287 >gi|330844811|ref|XP_003294306.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum] gi|325075260|gb|EGC29171.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum] Length = 315 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 109/241 (45%), Gaps = 12/241 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 H++ K GQ+ L + I+ I E + TV+EIG G GNLT LL +KV Sbjct: 23 ARHHEFQMNKSYGQHLLKNPLIIDSIVEKAQLKSTDTVLEIGPGTGNLTMKLLE-NCKKV 81 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I +E D + L+ + P L+II D LKVD F +AN+PY I + Sbjct: 82 IAVEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLPYF------DVCVANVPYQISS 135 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L F ++ P + + L+FQ+E R+ A+ Y RLSV T +K T + + Sbjct: 136 PLTFKLLAHR---PIFRTAVLMFQREFALRLAAKPGDSLYCRLSVNTQLLSKVTHLMKVG 192 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S V+ P P P + + F ++ KTL + L+ Sbjct: 193 KNNFLPPPKVESAVVKIEPFNPPPPINFIEWDGLVKLCFSRKNKTLSGIFRVGSVIETLN 252 Query: 252 Q 252 Q Sbjct: 253 Q 253 >gi|162446903|ref|YP_001620035.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A] gi|161985010|gb|ABX80659.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A] Length = 262 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 19/269 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK GQNFL D N+LKKI +S+ V+EIG G G LTQ ++ A+K + E Sbjct: 2 HQAKKRFGQNFLTDKNLLKKIVDSAQI-HDKNVLEIGPGLGALTQFIVK-DAKKYLAYEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLF 135 D +L++ S+ N II D L+ D + PI +I NLPY I T ++F Sbjct: 60 DYSLKDVLENFLSEDSN---IIFQDFLESDVTNDLDTYFKGEPIHLIGNLPYYITTPIIF 116 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ D ++ T++ QKEVG+R+ ++KN Y S + + T ++ +++ +F Sbjct: 117 KFLEIDQ----LKTATIMVQKEVGDRMISKKNLKSYNAFSAILQYFTDVRLVVNVNRKMF 172 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENL----- 249 P PKV S V+ + LE +I + +F +RKTL +L E+ Sbjct: 173 NPVPKVDSMVVQLTKKETKLDKSLELKFIQIVKLSFMHKRKTLLNNLSTGLNEDKAKILE 232 Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILT 277 L ++ RAE+LS++DF +T L Sbjct: 233 SLKSLNLDEKTRAESLSVDDFITLTEKLY 261 >gi|193214866|ref|YP_001996065.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC 35110] gi|193088343|gb|ACF13618.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC 35110] Length = 256 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 11/255 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL+D NI +KI S+ + VIEIG G G+LT+++ + R +E D + Sbjct: 13 KKSFGQNFLVDSNISRKIVRSAEIAEHDNVIEIGPGFGSLTKIISEVMPR-FTCVELDHK 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 IS + PN + +I DD LKVD K + P+ ++ N+PY I + +LF I Sbjct: 72 LADF---ISREFPN-VNLISDDFLKVDLAKLAE-TKPLTVLGNIPYAITSPILFKLIENR 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + L+ Q EV R+TA+ + YG L+V K +F + VF P P+V Sbjct: 127 AH---IDRAVLMMQDEVARRLTAEPKTKQYGILAVQLQAFGKPEYLFKVPKTVFKPRPEV 183 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S V+ + + AF RRKTL +LK + L A RA Sbjct: 184 ESAVVRIDFSKPVEIKNPSEFQTFVRTAFRMRRKTLANNLKGKYDVSAL--APEVLKKRA 241 Query: 262 ENLSIEDFCRITNIL 276 E S+ +F + + Sbjct: 242 EAFSVTEFVALYEQV 256 >gi|212696052|ref|ZP_03304180.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM 7454] gi|212676961|gb|EEB36568.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM 7454] Length = 255 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 9/255 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++K I Y K +GQNFL+D N + KI + S G ++EIG G G Sbjct: 1 MKKLYSPKTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLSEVS-GENILEIGPGIGT 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117 ++Q + +K++VIE D+ PILKD + N ++II D LK D +K Sbjct: 60 ISQEMAKTC-KKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGE 117 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPY I T ++ D + +T++ QKEV +R+ A + S Y LSV Sbjct: 118 DFKVVSNLPYYITTPIIEKLFEEDLP---CKDMTIMVQKEVADRMKADEKSKDYSSLSVF 174 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + T F + VF P PK+ S V+ L L I + F KRRKT+ Sbjct: 175 IKYYAEITGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEKVNRNILFSIVRAGFNKRRKTI 234 Query: 238 RQSLKRLGGENLLHQ 252 SL + + L + Sbjct: 235 LNSLSSVIEKEDLKK 249 >gi|198436563|ref|XP_002125054.1| PREDICTED: similar to GF16271, partial [Ciona intestinalis] Length = 381 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 16/272 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + I+ +GQ+ L + I+ + E + TV+EIG G GN+T +L KV Sbjct: 16 ATKQGIMFNTGVGQHILKNPLIINGMVEKAALKATDTVLEIGPGTGNMTVKMLE-KVNKV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I E D + L+ P +L ++ D LK++ FFN+ +ANLPY I + Sbjct: 75 IACEIDPRMSAELQKRVCGTPLQKKLHLMVGDVLKLESLPFFNVC-----VANLPYQISS 129 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++F + P + L+FQ+E +R+ A+ Y RLS+ T + ++ + Sbjct: 130 PIVFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSINTQLLARVDLLMKVG 186 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S+V+ P P P + + AF ++ KTL + +L Sbjct: 187 KNNFKPPPKVESSVVRIEPRNPPPPINFTEWDGLVRIAFLRKNKTLSGLFRTSSVLEMLE 246 Query: 252 QA-GIETNLRAENLSIEDFC---RITNILTDN 279 + I +L E + +D C ++ +IL +N Sbjct: 247 KNYRIHCSLNNETV-PDDLCMKTKVCSILEEN 277 >gi|327335119|gb|EGE76830.1| dimethyladenosine transferase [Propionibacterium acnes HL097PA1] Length = 298 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 22/287 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ I + P K GQNF+ D N +++I + VIE+G G G+LT L Sbjct: 8 NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGL 67 Query: 66 LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 L GA +V+ IE D+ L + RLE++ DAL V K + P + Sbjct: 68 LETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTAL 123 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 124 VANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWY 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE------SLKKITQEAFGKRRK 235 +A + ++ P VF+P P V S ++ P + + ++ AF RRK Sbjct: 181 AEAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRK 240 Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 241 MLRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287 >gi|26554486|ref|NP_758420.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2] gi|33516937|sp|Q8EU92|RSMA_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|26454496|dbj|BAC44824.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2] Length = 272 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 14/266 (5%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 + + K + MGQNFL++ NI KKI +S V+EIG G G LT+++L + Sbjct: 11 SFIKKNKFFASRKMGQNFLINENIKKKIVDSLEIKPDDHVLEIGPGFGALTKIVL-SQTK 69 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + V+E D++ LK + L II D LK DF++ FN + +II+NLPY+I + Sbjct: 70 NLTVVELDKRLVEFLKQEYKE----LRIINIDVLKFDFKE-FNKDTQYKIISNLPYSISS 124 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +++F + + L+ QKE+ +RITA+ + Y +VL ++ +FD+S Sbjct: 125 KIIFKILKYAN----FSQSVLMVQKEMADRITAKVGTKKYNNFTVLLRITSEIKKLFDVS 180 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----E 247 + FFP P+V STVI F + E L+ + F ++RKT+ +LK E Sbjct: 181 NNCFFPKPEVDSTVISFERKKDFDFTNFEKLESFLLKCFSQKRKTIFNNLKNYFPKQKIE 240 Query: 248 NLLHQAGIETNLRAENLSIEDFCRIT 273 + ++ I R EN+ E + ++ Sbjct: 241 EVFNKHSIIPTTRPENIKEELYLKMC 266 >gi|114331217|ref|YP_747439.1| dimethyladenosine transferase [Nitrosomonas eutropha C91] gi|122313917|sp|Q0AGQ8|RSMA_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|114308231|gb|ABI59474.1| dimethyladenosine transferase [Nitrosomonas eutropha C91] Length = 256 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 94/261 (36%), Positives = 132/261 (50%), Gaps = 12/261 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + IP++ GQ+FL+D +I+ +I L G +IEIG G G LTQ LL + IE Sbjct: 2 RHIPRRRFGQHFLVDHHIIAEIIHIICPLPGDRMIEIGPGLGALTQPLL-NNLDTLQAIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + +L I DALK DF +RI+ NLPYNI T LLF+ Sbjct: 61 LDRDIVDYLSR---NYAEKLVIHNVDALKFDFSAL---GEGLRIVGNLPYNISTPLLFHL 114 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + Q EV ER+ AQ ++P YGRLS++ R + M + F P Sbjct: 115 ---SRFSNLIIDMHFMLQLEVVERMVAQPSTPDYGRLSLMLQNRFEMEQMLIVPAEAFNP 171 Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P+V S ++ P + P IP LE L + AF +RRKTLR +L+ Q I Sbjct: 172 PPRVQSAIVCMRPRVVPVIPFGLEKLFGEMVLAAFSQRRKTLRNTLRHYLTIKDFDQLRI 231 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + LRAENLS+E + IT + Sbjct: 232 DPGLRAENLSLEQYSAITRHI 252 >gi|108803734|ref|YP_643671.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941] gi|118600896|sp|Q1AXL9|RSMA_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|108764977|gb|ABG03859.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941] Length = 262 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 122/261 (46%), Gaps = 13/261 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 PKK +GQ+FL D N +I ++G + V+EIG G G LT L A V +E D Sbjct: 11 RPKKRLGQHFLKDANTA-RIV-AAGLTERDVVLEIGPGRGFLTAFLAER-AGLVHAVEID 67 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 P L+ N + I + DAL+ D+ P R+ ANLPYNI + L+ + Sbjct: 68 PDVLPELRRAVGARGN-VRIHEADALRFDYGAL--SPPPNRLAANLPYNIASPLVLRLLE 124 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P E + + Q EV R+TA+ S YG +VL ++ + +SP VF P P Sbjct: 125 E---VPSLERMRFMVQLEVALRMTARPGSKDYGAYAVLIQLLSRPEVAHRVSPRVFDPPP 181 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLHQAGIE 256 +V S V+ + P +K++ AF RRK L +L R E L G Sbjct: 182 RVRSAVVELERRRD-APEDYRGVKELVAAAFRSRRKRLPNNLPGPLRERAEEALAGLGHG 240 Query: 257 TNLRAENLSIEDFCRITNILT 277 + RAE LS EDF + ++ Sbjct: 241 PDARAEELSPEDFVALYRRIS 261 >gi|225717560|gb|ACO14626.1| Probable dimethyladenosine transferase [Caligus clemensi] Length = 313 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 130/288 (45%), Gaps = 24/288 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 + ++ ++ + ++ +GQ+ L + ++ I E SG TV+EIG G GNLT Sbjct: 12 IGSQPNTSEAARGRQGLMFNTSLGQHILKNPAVVDSIIEKSGLRPTDTVLEIGPGTGNLT 71 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIR 120 LL ++VIV E D + L+ P +LEI+ DA+K + FF++ Sbjct: 72 AKLLD-KVKRVIVCEVDPRMVAELQKRFQHSPFKPKLEILVGDAIKTELP-FFDVC---- 125 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +AN+PY I + L+F + PF+ L+FQ+E R+ A Y RLS+ T Sbjct: 126 -VANVPYQISSPLVFKLL---LHRPFFRCAVLMFQREFAMRLIAAPGDKLYCRLSINTQL 181 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + + + + F P PKV S+V+ P P + +T+ F ++ KTL + Sbjct: 182 LSTVHHLLKVGRNNFRPPPKVESSVVRIEHKNPPPPINFKEWDGLTRICFVRKNKTLGAA 241 Query: 241 LKRLGGENLLHQAGIETNLR-----AENLSIEDF--CRITNILTDNQD 281 + L + N R E + EDF ++ + D+ D Sbjct: 242 FSQTPVLLTL-----DKNYRTHLSLNEEMVPEDFSIKKLIEEVLDSID 284 >gi|195341093|ref|XP_002037146.1| GM12757 [Drosophila sechellia] gi|194131262|gb|EDW53305.1| GM12757 [Drosophila sechellia] Length = 306 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 18/284 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L ++ D LK + FF++ IA Sbjct: 68 LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLHVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E ER+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITNI---LTDNQDIA 283 +L + + +LR E IED ++ + + + QD+A Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PIEDDFKMQDKVISILEEQDMA 279 >gi|314929244|gb|EFS93075.1| dimethyladenosine transferase [Propionibacterium acnes HL044PA1] gi|314972363|gb|EFT16460.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA3] gi|328908355|gb|EGG28114.1| dimethyladenosine transferase [Propionibacterium sp. P08] Length = 298 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 22/287 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ I + P K GQNF+ D N +++I + VIE+G G G+LT L Sbjct: 8 NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSEDRVIEVGPGLGSLTLGL 67 Query: 66 LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 L GA +V+ +E D+ L + + RL+++ DAL V K + P + Sbjct: 68 LETGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTAL 123 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 124 VANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWY 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP------IPCCLESLKKITQEAFGKRRK 235 +AT + ++ P VF+P P V S ++ P + ++ AF RRK Sbjct: 181 AEATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRK 240 Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 241 MLRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287 >gi|147919487|ref|YP_686773.1| putative dimethyladenosine rRNA methyltransferase [uncultured methanogenic archaeon RC-I] gi|110622169|emb|CAJ37447.1| putative dimethyladenosine rRNA methyltransferase [uncultured methanogenic archaeon RC-I] Length = 260 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 23/269 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P K Q+FL+D +L +I +++ V+EIGAGPGNLT+ LL AR V IE Sbjct: 2 DLAPDKRKDQHFLIDQAVLHRIVDAAALSSDEVVLEIGAGPGNLTR-LLAQKARHVYTIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++F L+ + + +I +ALKV+F +F +++ANLPY+I + + F Sbjct: 61 MDRRFAEALEADFQG--SNVTVIHGNALKVEFPRF------DKVVANLPYSISSDVTFKL 112 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 +S ++ L++Q+E +R+ A+ Y RLSV ++F++S F P Sbjct: 113 LSYP-----FKFAILMYQREFAQRMAAKVGEEDYSRLSVTVQHFADVKLLFNVSRRAFNP 167 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL----KRLGGEN---L 249 P+V STV+ P E L K+ AF RRK L+++L +G ++ + Sbjct: 168 QPEVESTVVKLTPRPAGYTVADEELFMKLVTAAFAGRRKKLKKALLNGAHMMGLKDPQSV 227 Query: 250 LHQAGIE-TNLRAENLSIEDFCRITNILT 277 + + + RAE +S E+F + N + Sbjct: 228 ISALPADVLDRRAEQVSPEEFALLANEVA 256 >gi|164655863|ref|XP_001729060.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966] gi|159102949|gb|EDP41846.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966] Length = 330 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 119/285 (41%), Gaps = 40/285 (14%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + + + I + + TV+E+G G GNLT +L A++V+V+E D + Sbjct: 51 RFGQHILKNPLVAQGIVDKANLKPTDTVLEVGPGTGNLTVRILE-KAKRVVVVEMDPRMA 109 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L P +LEI+ D K D F +I+N PY I + L+F +S Sbjct: 110 AELTKRVQGKPEQRKLEIVIGDVCKTDLPYF------DVVISNTPYQISSPLVFKLLSHR 163 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQ+E R+ A+ SP +GRLS K + ++ F P P+V Sbjct: 164 ---PLFRCAILMFQREFAMRLVARPGSPLWGRLSANVQLYAKVDHIMKVARGSFRPPPQV 220 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL--------------KRLGGE 247 S+V+ +P P P E +T+ F +R K LR K E Sbjct: 221 DSSVVRIVPLNPPPPIKFEEFDGLTRIVFSRRNKVLRACFFGARGVLEMMEANWKTYCAE 280 Query: 248 NLLHQAGIE--------------TNLRAENLSIEDFCRITNILTD 278 + + GI + RA L +++ + + D Sbjct: 281 HGVSTVGISFPDKVDSVLARLGMSEARAAKLDVDELLTLLSAFHD 325 >gi|14520595|ref|NP_126070.1| dimethyladenosine transferase [Pyrococcus abyssi GE5] gi|27151615|sp|Q9V1P8|RSMA_PYRAB RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|5457811|emb|CAB49301.1| ksgA dimethyladenosine transferase [Pyrococcus abyssi GE5] Length = 269 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 27/280 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I P +GQ+FL+ +++ K E + V+E+G G G LT L A+K Sbjct: 8 LLSKYGIRPNDRIGQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDELSKR-AKK 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ IL++ S N +EIIQ DA+KV++ F ++++N+PY I + Sbjct: 67 VFTIELDRRIIEILRNEYS--WNNVEIIQGDAVKVEWPSF------NKVVSNIPYQISSP 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + + +E +++Q E R+TA+ +Y RLS++T ++ I Sbjct: 119 FTFKLLKME-----FERAVVMYQLEFALRMTAKPGDRNYSRLSLMTQALADVEIVMRIGK 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT----LRQSLKRLGGEN 248 F+P PKV S ++ P + I + + + F RRK LR+S LG ++ Sbjct: 174 GAFYPKPKVDSALVLITPKKDRIELN----ESLVKALFQHRRKVVSKALRESAHMLGIKD 229 Query: 249 LLHQAGI-----ETNLRAENLSIEDFCRITNILTDNQDIA 283 + I +N R +L+ E+ I L +++ I+ Sbjct: 230 VKTVKDILSSVPHSNKRVFHLTPEEVKEIEEYLREHRIIS 269 >gi|156740307|ref|YP_001430436.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941] gi|156231635|gb|ABU56418.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941] Length = 302 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 86/301 (28%), Positives = 133/301 (44%), Gaps = 31/301 (10%) Query: 1 MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT N SL + L + P + MGQNFL+D L KI ++ TVIE+G G Sbjct: 1 MTSANPYLSLARVRAALHALDLRPSRSMGQNFLIDGAALAKIVNAAQLTSDDTVIEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G LT L+ R VI +E D + L+ N L IIQ D L++ E Sbjct: 61 LGVLTWELMHR-TRAVIAVELDHRLADRLRAEFRAFSN-LAIIQGDVLRLPPEAILAEHD 118 Query: 118 --------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 P +++ANLPY I + L +++S P + +L Q+EV +RI A+ Sbjct: 119 PDASSGARPYKVVANLPYAITSAALRHFLSNPLRPAL---MVVLVQREVADRICARPG-- 173 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQ 227 + L+ + ++ I FFP+P+V STV+ P +P E+L ++ + Sbjct: 174 NLSVLAHAVQIYAEPEIIARIPASCFFPTPEVESTVLRLRIRPQPAVVPDQPEALLRLIK 233 Query: 228 EAFGKRRKTLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 F RK L +L + N L AGI RAE ++++++ + L Sbjct: 234 AGFLHPRKQLGNALPGGMAAMGMKTDKQKILNALTAAGINATRRAETVTLDEWGAVYRAL 293 Query: 277 T 277 Sbjct: 294 K 294 >gi|159903252|ref|YP_001550596.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9211] gi|226732610|sp|A9B9Y0|RSMA_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|159888428|gb|ABX08642.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 282 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 124/270 (45%), Gaps = 11/270 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D+ IL+KI E++ + V+EIG G G LT LL V IE Sbjct: 5 GHSARKRFGQHWLKDVAILEKIVEAAELCENDRVLEIGPGRGALTHKLLNSKVSLVHAIE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D L++ H R + DALK+ + +++AN+PYNI + LL Sbjct: 65 LDTDLVVGLRERF-FHETRFSLKGGDALKISLLP-PDGIEVNKVVANIPYNITSPLLERL 122 Query: 138 ISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I + P +E L LL QKEV +RI A + +SV K+ + D+SP F Sbjct: 123 IGKLGFFPETRYERLVLLLQKEVADRILAMPGQSSFSAMSVRVQLLCKSRSVCDVSPKCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 PSPKV S V+ P + ++ + + AF RRK LR +L + N L Sbjct: 183 KPSPKVHSKVVVIEPFAFSERLNVDIEKRVESLLRTAFLGRRKKLRNTLASIRPLNQLES 242 Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTD 278 Q GI N R + +S + + + D Sbjct: 243 LADQLGISLNQRPQEISPMMWVSLAKRIHD 272 >gi|302530292|ref|ZP_07282634.1| dimethyladenosine transferase [Streptomyces sp. AA4] gi|302439187|gb|EFL11003.1| dimethyladenosine transferase [Streptomyces sp. AA4] Length = 280 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 128/275 (46%), Gaps = 15/275 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M ++ + + P K +GQNF+ D N +++I E G G V+E+G G G+ Sbjct: 1 MVELLGPAEIRGLADELDVRPTKKLGQNFVHDPNTVRRIVELGGVRPGDVVLEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 LT LL GA +V+ +E D L + + + +RL ++ DAL+V + Sbjct: 61 LTLGLLAAGA-QVVAVEIDPVLAARLPRTVAERAPEAADRLTVVGADALRVRAADL--PA 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+ I+ANLPYN+ ++ + ++ P S ++ Q EV +R+ A S YG SV Sbjct: 118 EPVSIVANLPYNVAVPVVLHLLAE---LPSLRSGLVMVQTEVADRMAAGPGSRTYGVPSV 174 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 W A + + VF+P P V S ++ F L + AF +RRKT Sbjct: 175 KLAWYGPARKVAAVPRAVFWPVPNVDSALVSFTRTDPVAGVDRARLFAVVDAAFSQRRKT 234 Query: 237 LRQSLKRLGGE-----NLLHQAGIETNLRAENLSI 266 LR +L G LL +AGI+ R E L + Sbjct: 235 LRAALAGWAGSAERAGELLAEAGIDPKTRGEQLDV 269 >gi|312371948|gb|EFR20006.1| hypothetical protein AND_20790 [Anopheles darlingi] Length = 294 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 12/237 (5%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 I+ K GQ+ L + ++ + E + V+EIG G GN+T +L +KV+ Sbjct: 7 LGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKILE-KVKKVVAC 65 Query: 77 EKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D + L+ +L+I+ D LK D FF+I +AN+PY I + + Sbjct: 66 EIDPRLVAELQKRVQGTHLQPKLQILIGDVLKTDLP-FFDIC-----VANMPYQISSPFV 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + PF+ L+FQ+E +R+ A+ Y RLS+ T + M+ + + Sbjct: 120 FKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNN 176 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S+V+ P P P +T+ AF ++ KTL + K+ L Sbjct: 177 FKPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQTTVLTALE 233 >gi|196005549|ref|XP_002112641.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens] gi|190584682|gb|EDV24751.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens] Length = 319 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 25/305 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M +++ ++ + + K + QNFLL+ NI KI G ++ V E+GAGPG Sbjct: 1 MIRLPPLPTIRDLIKLHNLSASKQLSQNFLLNSNITNKIVLLDGGVENHQVCEVGAGPGC 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115 LT+ ++ GA K++ +EKD++F P L +++ R+ I+ D L + K F+ Sbjct: 61 LTRSIIAGGASKIVAVEKDRRFLPALDILANAVDGRMVIVYADILNYEMIKAFDPVDKKA 120 Query: 116 ----SSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQK 166 S ++II NLP++I T LL W+ +A + +TL FQ+EV +RI A+ Sbjct: 121 WNDESPKMKIIGNLPFSISTPLLIQWLNLISQNAGPFSLGRIKMTLTFQEEVAQRILAEP 180 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKI 225 + RLS++T F I F P+PKV S V+ F P + P I +L+ I Sbjct: 181 KTSQRSRLSIMTQNYCHVKPGFLIKGSSFVPAPKVNSVVLTFTPRITPLIDIDFTTLEVI 240 Query: 226 TQEAFGKRRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRIT----NI 275 + F RRK + + K L + L +A ++ LR + LS E+ R+ + Sbjct: 241 AKSLFRHRRKFVIKGTKYLFPTDVDLSLKLFEEADVDWKLRPQQLSTEEIQRLCAAYKKV 300 Query: 276 LTDNQ 280 L D+Q Sbjct: 301 LLDHQ 305 >gi|21358017|ref|NP_651660.1| CG11837 [Drosophila melanogaster] gi|195574637|ref|XP_002105291.1| GD21406 [Drosophila simulans] gi|27151493|sp|Q9VAQ5|DIMT1_DROME RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|7301735|gb|AAF56847.1| CG11837 [Drosophila melanogaster] gi|16769516|gb|AAL28977.1| LD35950p [Drosophila melanogaster] gi|194201218|gb|EDX14794.1| GD21406 [Drosophila simulans] gi|220944428|gb|ACL84757.1| CG11837-PA [synthetic construct] gi|220954304|gb|ACL89695.1| CG11837-PA [synthetic construct] Length = 306 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 132/284 (46%), Gaps = 18/284 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + + I+ K GQ+ L + ++ + E + V+EIG G GN+T + Sbjct: 8 KKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KVI E D + L+ P +L+++ D LK + FF++ IA Sbjct: 68 LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E ER+ A+ Y RLS+ T + Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237 Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITNI---LTDNQDIA 283 +L + + +LR E IED ++ + + + QD+A Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PIEDDFKMQDKVISILEEQDMA 279 >gi|312372402|gb|EFR20370.1| hypothetical protein AND_20209 [Anopheles darlingi] Length = 353 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 28/300 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ ++ Y++ K + QNFL+D + KI ++G + V+E+G GPG +T+ + Sbjct: 20 PLPTIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGKIRDHHVLEVGPGPGGITRSI 79 Query: 66 LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----- 117 + R ++V+EKD++F P +L ++S R++I++ D L E F Sbjct: 80 IRQHPRHLVVVEKDRRFMPTMEMLAEVSQPF-MRMDIVRGDILDYRIEGAFPDCEPHDWM 138 Query: 118 -----PIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKN 167 P+ +I NLP+ I TRLL NW + W SLTL FQKEV ERI A Sbjct: 139 DPVPAPVHLIGNLPFAISTRLLINWLRDMSLRTGAWHYGRASLTLTFQKEVAERIVAPIL 198 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKIT 226 S RLSV+ +K + F IS F P P+V V+ +P P+ ++++K+ Sbjct: 199 SDQRCRLSVMNQIWSKPDLRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVI 258 Query: 227 QEAFGKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTD 278 + F R+K R+ + L + ++ ++ R+ LS+++ RI + Sbjct: 259 RHIFSMRQKYCRRGVSNLYPPTVRDELTELTFRKSSVDPLSRSFQLSVDECLRIVEAYDE 318 >gi|323449377|gb|EGB05265.1| hypothetical protein AURANDRAFT_60268 [Aureococcus anophagefferens] Length = 312 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 12/240 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 S + + K +GQNFL + I+ I E + +V+EIG G GNLT LL A+K+ Sbjct: 18 ASSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLAQ-AKKL 76 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 +E D++ + P +RLE++ D LKV F +ANLPYNI + Sbjct: 77 TCVEFDRRMVREVAKRVENDPRKHRLEMVHGDVLKVALPYF------DVCVANLPYNISS 130 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 LF ++ P + S ++FQ+E +R++A+ Y RLSV T K T + + Sbjct: 131 PFLFKLLAHR---PHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIKVG 187 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P PKV S V+ P P + + F ++ KTLR + L Sbjct: 188 RNNFRPPPKVDSRVVKIEVRNPPPPVNFVEWDGLVKLCFNRKNKTLRSTFTNKKTLADLE 247 >gi|219685175|ref|ZP_03539995.1| dimethyladenosine transferase [Borrelia garinii Far04] gi|219673271|gb|EED30290.1| dimethyladenosine transferase [Borrelia garinii Far04] Length = 281 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 14/284 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K IL KI P+K GQN+L++ NI +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQILKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 68 AMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 A + DI F+P+PKV ST + IP N I + K+ + F RRK L+ Sbjct: 179 SHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSSRRKKLKN 237 Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNILTDNQ 280 ++ + + +L + ++ R EN+S+E+F +I+N LT + Sbjct: 238 TIINFIKNKAILEENFLKEYLGKRPENISVEEFIQISNTLTAHH 281 >gi|297193911|ref|ZP_06911309.1| dimethyladenosine transferase dimethyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720273|gb|EDY64181.1| dimethyladenosine transferase dimethyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 286 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 23/291 (7%) Query: 1 MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55 M+ + ++ + + + P K GQNF++D N +++I ++ V+EIG Sbjct: 1 MSTTDPDALLGPADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVKPDDVVVEIG 60 Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEK 111 + L A +V+ +E D L +R ++ DA+ V + Sbjct: 61 P-GLGSLTLGLLEAADRVVAVEIDDVLAGALPATVAARLPDRASRFSLVHSDAMHV---Q 116 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 P ++ANLPYN+ +L + + P E ++ Q EV +R+ A + Y Sbjct: 117 ELPGPPPTALVANLPYNVAVPVLLHMLDR---FPSIERTLVMVQAEVADRLAAGPGNKVY 173 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229 G SV W ++ I +VF+P+P V S ++ + +P+ + + A Sbjct: 174 GVPSVKANWYSEVKRAGSIGRNVFWPAPNVDSGLVSLVRRTSPVATTASRAEVFAVVDAA 233 Query: 230 FGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 F +RRKTLR +L G L AG+ R E+L++E+F RI Sbjct: 234 FAQRRKTLRAALAGWAGSPAAAEAALVAAGVSPQARGESLTVEEFARIAEA 284 >gi|289740727|gb|ADD19111.1| ribosomal RNA adenine dimethylase [Glossina morsitans morsitans] Length = 306 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 19/279 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + L + I+ K GQ+ L + ++ + E + ++EIG G GN+T + Sbjct: 8 KRNRLHHEVQKQGILFNKEFGQHILKNPLVITSMLEKAAIRSTDVILEIGPGTGNMTVRM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123 L +KVI E D + L+ P +L+I+ D LK D FF++ IA Sbjct: 68 LERC-KKVIACEIDTRLAAELQKRVQATPMQYKLQILIGDFLKADLP-FFDLC-----IA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + P + L+FQ+E +R+ A+ Y RLSV T + Sbjct: 121 NIPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSVNTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ KTL + K Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRVAFLRKNKTLAAAFKI 237 Query: 244 LGGENLLHQA-GIETNLRA----ENLSIEDFCRITNILT 277 +L + + +LR EN ++ ++ NIL Sbjct: 238 NSVLEMLEKNYKLHLSLRNKPIEENFDMQ--AKVVNILE 274 >gi|312085629|ref|XP_003144755.1| ribosomal RNA adenine dimethylase [Loa loa] gi|307760083|gb|EFO19317.1| ribosomal RNA adenine dimethylase [Loa loa] Length = 342 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 26/301 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 SLK L Y++ KK + QN+L+D+N+ +KI + +G VIEIG GPG++T+ + Sbjct: 10 PLPSLKNFLYAYRLQAKKILSQNYLMDMNLTRKIVRQAVVKEGDYVIEIGPGPGSITRAI 69 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 L R++ VIE D +F P L+ + R+ I + D LK + E+ ++ + Sbjct: 70 LETNCRRLDVIEIDHRFIPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEE 129 Query: 117 ---SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNS 168 II NLP+NI + L+ ++ W L L FQ EV ER+ + +S Sbjct: 130 DRLPMAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRIPLLLTFQMEVAERLCSPVDS 189 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQ 227 P R+S+++ + T+ ++F I F PSPKV V+ FIP +P I E ++K+ + Sbjct: 190 PFRARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFIPRQDPLIKTSFEVVEKVCR 249 Query: 228 EAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F R+K + + ++ L E +LL + I+ A L +E F I + ++ Sbjct: 250 RVFNYRQKYVVKGIRSLYPEELAKNLADDLLRRCRIDPTTTAICLGVEQFADICYVYEEH 309 Query: 280 Q 280 Sbjct: 310 C 310 >gi|322493412|emb|CBZ28699.1| ribosomal RNA adenine dimethylase family protein,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 374 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 13/246 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +KT S I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL Sbjct: 57 SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KVI E D + L P ++L+II+ + L+ DF F + +AN Sbjct: 117 QT-AKKVIAFEIDPRMMAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + + IS + F P PKV S+VI P P E + + F ++ K + Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPPPDVDFEEWDGLVKMLFSRKNKKSSSIFRTK 285 Query: 245 GGENLL 250 L Sbjct: 286 AAVQAL 291 >gi|298246521|ref|ZP_06970327.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963] gi|297554002|gb|EFH87867.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963] Length = 294 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 16/278 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L+ +L + + P K GQNFL+D ++L++I E++ V+E+G+G G LT+ L Sbjct: 17 RDLRNLLYAHGMRPNKAFGQNFLIDRSVLQQIVEAAEINANEEVLEVGSGTGVLTRELAQ 76 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 AR+V+ +E ++ +L+ PN +E+++ + L ++ + F P +++ANLPY Sbjct: 77 E-ARRVVAVELERDMLTLLEKTVGDRPN-VELVERNLLFINPQDHFE-HRPYKLVANLPY 133 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I +++ + P L ++ Q EV +RI A L V + K ++ Sbjct: 134 YITAPTFRHFLESQNPP---RLLVVMVQLEVAQRIVAAPGDL--SVLGVSIQFYGKPRIV 188 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSL---- 241 + F+P+PKV S ++ + + ++ Q F ++RK L SL Sbjct: 189 SKVPAQAFYPAPKVDSAILRIDVNDETLLTLEERDRFFRVVQAGFAEKRKQLHNSLTHAL 248 Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K L QAGIE N RAE LSIE++ ++ Sbjct: 249 HYKNEVVRACLSQAGIEANRRAEMLSIEEWMQLWRAFE 286 >gi|301110310|ref|XP_002904235.1| dimethyladenosine transferase [Phytophthora infestans T30-4] gi|262096361|gb|EEY54413.1| dimethyladenosine transferase [Phytophthora infestans T30-4] Length = 312 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 27/266 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P +GQ+FL + I+ +I + +E+G G GNLT LL A++V+ +E D Sbjct: 29 PNTNLGQHFLKNPMIVTQIVAKAAIRGTDVCLEVGPGTGNLTVKLLEQ-AKRVVAVEFDP 87 Query: 81 QFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + L+ +H N L+II D ++V FF++ +ANLPY I + +F + Sbjct: 88 RMVAELQKRIQHTEHINHLQIIHGDVMRVQLP-FFDVC-----VANLPYQISSPFVFKLL 141 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + ++FQ+E +R++A+ Y RLSV T K + + + F P Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDELYCRLSVNTQLLAKVDQLLKVGRNNFRPP 198 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH------- 251 PKV S V+ P P P + + F ++ KTL +L Sbjct: 199 PKVESRVVRIEPRNPPPPVNFTEWDGMIKIIFNRKNKTLHSCFVTKSVLKILEENYKTYC 258 Query: 252 -------QAGIETNLRAEN-LSIEDF 269 ++ I + E LS EDF Sbjct: 259 SLNNELPESDIAMKKKVEEVLSFEDF 284 >gi|313835387|gb|EFS73101.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA2] Length = 298 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 22/287 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ I + P K GQNF+ D N +++I + VIE+G G G+LT L Sbjct: 8 NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSEDRVIEVGPGLGSLTLGL 67 Query: 66 LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 L GA +V+ +E D+ L + + RL+++ DAL V K + P + Sbjct: 68 LEPGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTAL 123 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 124 VANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWY 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP------IPCCLESLKKITQEAFGKRRK 235 +AT + ++ P VF+P P V S ++ P + ++ AF RRK Sbjct: 181 AEATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRK 240 Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 241 MLRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287 >gi|154341407|ref|XP_001566655.1| ribosomal RNA adenine dimethylase family protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063980|emb|CAM40171.1| putative ribosomal RNA adenine dimethylase family protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 366 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 13/245 (5%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++ S I+ K GQ+ L + ++ I E S V+EIG G GNLT+ LL Sbjct: 57 PGVRAGGSQSGIVFNKGFGQHILKNPLVIAAIVEKSAIKPTDVVVEIGPGTGNLTEKLLQ 116 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A+KVI E D + L P ++L+II+ + L+ DF F + +AN+ Sbjct: 117 T-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVANV 169 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + + Sbjct: 170 PYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARCS 225 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + IS + F P PKV S+VI P P E + + F ++ K + Sbjct: 226 HLMKISRNSFNPPPKVESSVIRLDPKCPPPDVDFEEWDGLVKMLFNRKNKKASSIFRTKV 285 Query: 246 GENLL 250 L Sbjct: 286 AVQAL 290 >gi|309371330|emb|CBX33011.1| hypothetical protein CBG_11970 [Caenorhabditis briggsae AF16] Length = 393 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 28/303 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +L+ + Y++ KK + QN+L+D+NI +KIA+ + + VIEIG+GPG +T+ + Sbjct: 7 PLPALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGI 66 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 L GA ++ V+E D +F P L+ ++ +R+ I DAL+ + + Sbjct: 67 LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPW 126 Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQK 166 + +I NLP+NI + L+ ++ ++ LTL FQ EV +R+ + Sbjct: 127 HDSKLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPI 186 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225 R+S++ + + ++F IS F P P+V V+ F+P P+ E L+K+ Sbjct: 187 ACDTRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 246 Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ F R+K + + LK L + LL + I+ + L +E F + Sbjct: 247 CRQVFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLAEGYN 306 Query: 278 DNQ 280 + Sbjct: 307 EQC 309 >gi|307184319|gb|EFN70777.1| Dimethyladenosine transferase 1, mitochondrial [Camponotus floridanus] Length = 348 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 143/298 (47%), Gaps = 26/298 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ IL Y++ K + QNFLLD ++ KI SG L G V+E+G GPG LT+ + Sbjct: 8 PLPSIRDILKLYRLNAIKRLSQNFLLDQRLIDKIISKSGHLTGSQVLEVGPGPGGLTRSI 67 Query: 66 LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF--------- 113 L ++++V+EKD++F P +L D +++II DD K++ E F Sbjct: 68 LKQVPKRLVVVEKDRRFKPTLDMLADSFGAINGQMDIIYDDITKINLENLFPMEEKRDWD 127 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168 + + I II NLP+N+ T L+ W+ A W +TL FQKEV ER+ A + Sbjct: 128 DKNPDIYIIGNLPFNVSTPLIIKWLHAIAERRGPWAFGRTKMTLTFQKEVAERLVADVSH 187 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227 RLSV+ T + F I F P P V V+ F P + P + +KIT+ Sbjct: 188 HQRCRLSVMAQTWTFPVLRFIIPGSAFVPKPDVDVGVVSFTPLVKPRTQHDFKFFEKITR 247 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAG--------IETNLRAENLSIEDFCRITNILT 277 F R+K + ++ L + + G ++ LRA L++ D R+ Sbjct: 248 HVFSFRQKYSIRCIETLFPLDCRKELGLMMYKLSDLDPKLRAFQLTVHDIDRLATAYK 305 >gi|118103858|ref|XP_424746.2| PREDICTED: similar to DIMT1L protein [Gallus gallus] Length = 259 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 12/229 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E + V+E+G G GNLT +L +KVI E D + Sbjct: 23 GQHILKNPLVVNSIIEKAALRRTDVVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 81 Query: 86 LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ N+LEI D LK + F +ANLPY I + +F + Sbjct: 82 LQKRVQGTCLANKLEIKVGDVLKTELPFF------DACVANLPYQISSPFVFKLL---LH 132 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 PF+ L+FQ+E R+ A+ S Y RLS+ T + + + + F P PKV S Sbjct: 133 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVES 192 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 +V+ P P P + + + AF ++ KTL + K E LL Sbjct: 193 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDH 241 >gi|294155309|ref|YP_003559693.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145] gi|291600503|gb|ADE19999.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145] Length = 255 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 123/267 (46%), Gaps = 19/267 (7%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 +I KK GQNFL D NIL KI V+EIG G G LT+ +L A+ + Sbjct: 2 KKEIFAKKKFGQNFLNDDNILNKIVSIVDL-KNENVLEIGPGRGALTRKIL-QDAKSLTS 59 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 E D+ ILK +Q ++++ D L D + + IIAN+PY I T +LF Sbjct: 60 YEIDRDLVDILKKEFNQK--NFKLVEGDFLNEDISNYKD----TWIIANIPYYITTDILF 113 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + ++ L+ QKEV ERI AQKNS Y +LS+ + F + F Sbjct: 114 KILEN---ISSFKGAILMVQKEVAERIVAQKNSQDYSKLSITLQYYATVKKEFIVPSKCF 170 Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250 P+P V S +I N L K+ F +RRK L SLK +++ Sbjct: 171 NPAPNVDSAIISLKFDKNKKWDITLNEFFKL---CFLQRRKKLSYSLKTKFKIEKIKSVF 227 Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277 G + ++R + LS+ED ++ N L Sbjct: 228 ETLGFDESIRIQQLSLEDILKLFNKLY 254 >gi|71083413|ref|YP_266132.1| dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1062] gi|119365045|sp|Q4FMR0|RSMA_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71062526|gb|AAZ21529.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique HTCC1062] Length = 262 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 92/263 (34%), Positives = 148/263 (56%), Gaps = 9/263 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK +GQNFL+D +L+KI + + V+EIG G GNLT +L +K+ V+EK Sbjct: 3 VKAKKSLGQNFLIDREVLEKIVSITDITNKE-VLEIGPGSGNLTTYILKKKPKKLYVVEK 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D +LK+ + ++II DD LKV + + + NLPYNI T +L WI Sbjct: 62 DDDLAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI 116 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +++SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+ + DI P F P Sbjct: 117 LNIGSNFWFDSLVLMFQKEVADRIISEFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPR 176 Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGI 255 PK+ S+++ F P N ++L+KIT+ F +RRK L++ ++ G+ + + GI Sbjct: 177 PKIDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFGI 236 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + NLR +NL + + ++ D Sbjct: 237 DLNLRPQNLEPDVYFKLVKEYED 259 >gi|88856859|ref|ZP_01131512.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1] gi|88813929|gb|EAR23798.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1] Length = 276 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 16/283 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ ++ + I P K +GQNF++D N +++I +++ + G TV+E+G G G+ Sbjct: 1 MSTLLGPAEIRDLADLLGIQPTKKLGQNFVIDPNTVRRIVKAAHVVSGETVVEVGPGLGS 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSP 118 LT LL GA V+ +E D++ L SQ +L +I DDAL+V P Sbjct: 61 LTLGLLETGA-SVVAVEIDKRLAAQLPLTVSQMQPDAQLTVITDDALRVTE----LPDDP 115 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +ANLPYN+ +L +++ + ++ Q EVG R+ A S YG S+ Sbjct: 116 RVFVANLPYNVSVPVLLHFLE---HFDSLDRGLVMVQAEVGNRVAAGPGSKVYGSPSIKA 172 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTL 237 W + + +S VF+P P V S ++ F P ++ + AF +RRK L Sbjct: 173 AWYGEFSTAGLVSRQVFWPVPNVDSVLVRFERREQPGTVEERKATFALVDAAFQQRRKML 232 Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 RQSL + G L AG+ R E L++ DF I Sbjct: 233 RQSLSSVLGNSTAASERLIAAGVAPTARGEELTVHDFLAIARA 275 >gi|146295340|ref|YP_001179111.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408916|gb|ABP65920.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 250 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 134/256 (52%), Gaps = 13/256 (5%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 ++D NI++KI + V+EIGAGPG LT L + A+KV +E D++ +LK++ Sbjct: 1 MIDENIVRKIVNFAKIDQKE-VLEIGAGPGTLTTFL-SQKAKKVFAVEIDKKILNVLKEV 58 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149 N +EII D L+++ + + + ++ NLPY + +++LF + ES Sbjct: 59 CQNLSN-VEIINQDFLELNVKNL-TSTQKLCVVGNLPYYVTSQILFKLFEERN---YIES 113 Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 T++ QKEV +R+ A+ S YG L+V + K F +S +VFFP P+V STV+ Sbjct: 114 FTIMVQKEVAQRLLAKPGSKDYGILTVAMNFYCKVEDFFYVSKNVFFPRPEVDSTVLKVS 173 Query: 210 PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAEN 263 + + KI F RRKT+ SL G +++L + ++ NLRAE+ Sbjct: 174 FKEDIPDVDEKKFFKIVHACFSTRRKTILNSLSNSLGIEKAELKHILEKTSLQENLRAED 233 Query: 264 LSIEDFCRITNILTDN 279 LS+E F R+ L Sbjct: 234 LSLEHFVRLYKELESR 249 >gi|281204745|gb|EFA78940.1| dimethyladenosine transferase [Polysphondylium pallidum PN500] Length = 306 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 113/244 (46%), Gaps = 12/244 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ++ H++ K GQ+ L + I+ I + S TV+EIG G GNLT LL Sbjct: 22 QKVVRHHEFQMNKTFGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLESC- 80 Query: 71 RKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L+ + + + LEII D LKVD F +AN+PY Sbjct: 81 KKVIAVEVDPRMAAELQKRVATTPYASHLEIILGDFLKVDLPYF------DVCVANVPYQ 134 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ P + + L+FQKE R+ A Y RLSV T +K T + Sbjct: 135 ISSPLTFKLLAHR---PVFRTAVLMFQKEFALRLAASPGDSLYCRLSVNTQLLSKVTHLM 191 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + + F P PKV S V+ P P P + + F ++ KTL K Sbjct: 192 KVGKNNFLPPPKVESAVVKIQPFNPPPPINFIEWDGLIKLCFSRKNKTLPAIFKVNSVIE 251 Query: 249 LLHQ 252 +L+Q Sbjct: 252 MLNQ 255 >gi|229816446|ref|ZP_04446747.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM 13280] gi|229807988|gb|EEP43789.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM 13280] Length = 321 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 82/294 (27%), Positives = 128/294 (43%), Gaps = 21/294 (7%) Query: 1 MTMN--NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MT + + + +L + + K +GQNFL+D +++++I + V+E+G G Sbjct: 28 MTTSPLANPTATREMLEAFGLATKHRLGQNFLIDNHVIERIMALAELTGSERVLEVGPGI 87 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--IS 116 G LT L+ AR V IE D + P+L + H N I DAL V Sbjct: 88 GTLTLALVQEAAR-VTSIEMDTELEPVLSAHAMDHSN-FRFIMGDALAVPPVAIAEALDG 145 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P ++ANLPYN+ ++ + P ++ QKEV +RI A + YG +V Sbjct: 146 EPELLVANLPYNVAATIILQFFQTM---PSLRRAVVMVQKEVADRIAAAPGTKAYGAYTV 202 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229 + T F++ P F P+P V S V+ P ++ ++ A Sbjct: 203 KLSLYGEVTGRFEVPPRCFMPAPHVDSAVVRIDRVDVSDAEGEGAAPADAAAVARVVDAA 262 Query: 230 FGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 F +RRKT+R S+ G + GI RAE L+ EDF + LT Sbjct: 263 FAQRRKTIRNSMSSNGFDKDALDAAFEACGISPTARAEALTTEDFIALAASLTS 316 >gi|194388854|dbj|BAG61444.1| unnamed protein product [Homo sapiens] Length = 243 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 12/227 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 P PKV S+V+ P P P + + + F ++ KTL + K Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243 >gi|303245325|ref|ZP_07331609.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ] gi|302493174|gb|EFL53036.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ] Length = 283 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 84/262 (32%), Positives = 118/262 (45%), Gaps = 11/262 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K+ +GQNFL D N KI + G G TVIEIG G G LT ++ G + +EKD Sbjct: 24 RAKRSLGQNFLSDPNTAAKIVSACGIAAGDTVIEIGPGRGALTGLIAAAGPSSFLALEKD 83 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 ++ L L DAL+ D+ + +S +RII NLPYNI + LL++ + Sbjct: 84 RELAAHLSRTHPSLAVALT----DALRQDWSRLDRLSGNVRIIGNLPYNIASPLLWDLCA 139 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 T + + Q EV R+ A YG LS + F + P VF P P Sbjct: 140 GAT---RFTRAAFMVQHEVALRLCAGPGGREYGALSAWIASHVRVAYCFKVPPTVFRPRP 196 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255 KV S V+ P + P +L K+ + F KRRK L LK G ++ L GI Sbjct: 197 KVDSAVVAMTPLPLSDRPAEPLALAKLLKTLFSKRRKQLGGILKAWRGPELDDWLAGQGI 256 Query: 256 ETNLRAENLSIEDFCRITNILT 277 R E L+ + + +L Sbjct: 257 RLTDRPETLAPKQLAGLAEMLK 278 >gi|282856259|ref|ZP_06265542.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455] gi|282586018|gb|EFB91303.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455] Length = 269 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 8/259 (3%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 +GQNFL + + ++ E+ G V+EIG G G LT+ LL R V +E D++ Sbjct: 10 SLGQNFLNNPAVARRCLEAGGLNSEDVVLEIGPGQGALTRALLQSPCRFVHALEIDRRLA 69 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 P L+ + + HP R EI DAL D + F + P +++AN+PYNI T L++ + + Sbjct: 70 PWLEPLRAGHPGRFEISWGDALSADLRELFPL--PNKVLANIPYNITTELIWKIL-VELG 126 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P E L LL QKE +R+ A + L + + + ++P F P PKV S Sbjct: 127 PRRLERLILLVQKEAADRLNAPPATKGRSPLGITLEQMSAVRTLMKVAPGSFNPPPKVWS 186 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIETN 258 +I N +++ AF +RRK L +L G +L AGI+ Sbjct: 187 ALISIDLEENLDLAASPPWRRLLAAAFAQRRKKLANNLAAAGYGKDRIATILSSAGIDPM 246 Query: 259 LRAENLSIEDFCRITNILT 277 RAE L+ + + Sbjct: 247 SRAEELTASQWRALYQEFA 265 >gi|289704908|ref|ZP_06501325.1| dimethyladenosine transferase [Micrococcus luteus SK58] gi|289558404|gb|EFD51678.1| dimethyladenosine transferase [Micrococcus luteus SK58] Length = 307 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 20/285 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + ++ I + + P K GQNF++D N +++I +++ V+EIG + Sbjct: 15 SAADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVTADEHVLEIGP-GLGSLTLG 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS---- 117 L A V +E D L +++ + L ++ DA+ + + + Sbjct: 74 LLDAAAAVTAVEIDPVTAARLPRTAAEFRPGAEDALAVLHADAMTLSEQALAEVRPAAAV 133 Query: 118 --PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 P ++ANLPYN+ +L + ++ P ++ Q+EV +R+ A S YG S Sbjct: 134 GGPTALVANLPYNVAVPVLLHALA---VLPGLRHGLVMVQEEVADRLAAGPGSKVYGVPS 190 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRR 234 W + VF+P+P++ S ++ F P + + AF +RR Sbjct: 191 AKAAWYADVRKAGTVGTQVFWPAPRIHSGLVAFTRREPPTGGAPRREVFAVVDAAFAQRR 250 Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 KTLR +L G E+ L AG++ R E L I F RI Sbjct: 251 KTLRAALASWAGSPQAAEDALVAAGVDPRARGEALDIAAFARIAE 295 >gi|332019925|gb|EGI60385.1| Dimethyladenosine transferase 1, mitochondrial [Acromyrmex echinatior] Length = 351 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 26/298 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ IL Y + K + QNFLLD N+ KKI +G++ G V+E+G GPG LT+ + Sbjct: 8 PLPTIRDILKLYNLSAIKRLSQNFLLDENLTKKIVAKAGNISGGQVLEVGPGPGGLTRSI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF--------- 113 L +++V+EKD++F P L+ ++ +++II DD LK + E F Sbjct: 68 LKKTPERLVVVEKDKRFKPTLEMLADSFGAINGKMDIIYDDILKTNIESLFPLEKKRNWN 127 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168 + I +I NLP+++ T L+ W+ A W +TL FQKEV ER+ A Sbjct: 128 DKPPDIFVIGNLPFSLSTHLIIQWLHAISEQRGPWAFGRTKMTLTFQKEVAERLVAPPMG 187 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227 RLSV+ T + F I F P P V V+ F P + P + + IT+ Sbjct: 188 DQRCRLSVMAQTWTFPVLRFIIPGEAFVPKPDVDVGVVSFTPLVKPRTQYDFKFFEMITR 247 Query: 228 EAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILT 277 F R+K + ++ L + + A +E L+ L+IED ++ Sbjct: 248 HIFNFRQKYSIRCIETLFPKEHRKDLGLMMYKLADLEPTLKPTQLTIEDINKLATAYK 305 >gi|221195710|ref|ZP_03568764.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626] gi|221184476|gb|EEE16869.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626] Length = 328 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 78/306 (25%), Positives = 130/306 (42%), Gaps = 37/306 (12%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + + L + + K +GQNFL++ NI++KI + V+E+G G G LT + Sbjct: 14 NPRATRETLEAFGLATKHRLGQNFLVEDNIIRKIIRLAELTSDDVVLEVGPGLGTLTVAM 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNIS-------- 116 L R V IE D++ +L + H + + DALK + + Sbjct: 74 LDY-VRAVCSIEADRELEGVLAATCKEPHQDSFVLCMGDALKATPQLVGDAYASLGVFAD 132 Query: 117 -----------SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 P + ++NLPY + L+ + T E ++ Q EV +RI A+ Sbjct: 133 TQGKEASGALIGPNKFVSNLPYQVAATLILLFFQEFT---TLEQAVVMVQAEVADRIAAK 189 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCC----- 218 + YG + + + F+++P F P P+V S V+ P +P Sbjct: 190 PGTKAYGAYTAKLALYAQVSGRFEVAPGNFMPPPRVNSAVVRLERAPMTDPSGTSVLTSE 249 Query: 219 -LESLKKITQEAFGKRRKTLRQS-----LKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 L + ++ AF +RRKT+R S K+ E A IE +RAE L ++DF R+ Sbjct: 250 QLAWVARVIDAAFAQRRKTIRNSMGASGFKKDTLEKAFLAAHIEPTVRAEALGVKDFVRL 309 Query: 273 TNILTD 278 L + Sbjct: 310 AMALAE 315 >gi|212702270|ref|ZP_03310398.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098] gi|212674333|gb|EEB34816.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098] Length = 272 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 130/268 (48%), Gaps = 15/268 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQ+FL +I +IA D VIEIG GPG LT+ + +++++EKD Sbjct: 8 KAKKSLGQHFLRHESICNRIASLLLPKDTDNVIEIGPGPGALTRAIEAQPHARLVLLEKD 67 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + + S R + + DAL+ D+ + +P +II NLPYN+ + ++++ S Sbjct: 68 SHWAAERQRLGSA---RTQAVLTDALRFDWSRI-TPDNPWKIIGNLPYNVASPMMWDLFS 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 T + QKEVG+R+ A + HYG LSV + M F + P F P P Sbjct: 124 RAT---GLVRAAFMVQKEVGQRLAAGPGNGHYGALSVWVQSFARPCMEFIVGPGAFSPPP 180 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAG 254 KV S V+ F P + P + L + + F +RRK L +R L QAG Sbjct: 181 KVDSAVLSFEPLPLDQRPDRPDLLALVIKVCFQQRRKQLGSIARRCPLAPWLSAAIEQAG 240 Query: 255 IETNLRAENLSIEDFCRITNI---LTDN 279 I LR E L++ DF I+ L DN Sbjct: 241 ITPTLRPEQLTVADFQHISRFGASLLDN 268 >gi|320107650|ref|YP_004183240.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4] gi|319926171|gb|ADV83246.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4] Length = 264 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 13/266 (4%) Query: 20 IPKK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P+K +GQNFL+D +IA++ G + TV+EIG G G++T +L A+K+I IE Sbjct: 3 QPRKPKLGQNFLVDDGARHRIADALGDVSQRTVLEIGPGHGSITSILAER-AKKLICIEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P L+ HPN +EII+ D L DF ++ NLPY I + +L + Sbjct: 62 DRSLAPELRFKFRNHPN-VEIIEADVLHADFAALLGEDETADLVGNLPYYITSDILLHLY 120 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + ++ Q+EV +RI+A + +G LS + +F + P F P Sbjct: 121 AQSE---RLRMAVVMMQREVADRISASPGTRDFGLLSATSQMYADVENLFTLPPEAFSPP 177 Query: 199 PKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLH 251 P V S+V+ P + + + F ++RKTL +L+ G Sbjct: 178 PDVHSSVLRLTFAPRFAELHVEAKPFDAFLKMCFQQKRKTLSNNLRAGGVSPERIAAACA 237 Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277 Q + +RAE +++E + L Sbjct: 238 QTDVSPTVRAEAMTLEALASMHRELR 263 >gi|298529691|ref|ZP_07017094.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans ASO3-1] gi|298511127|gb|EFI35030.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans ASO3-1] Length = 258 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 14/260 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQNFL D+NI +KI ++ V+EIG G G LT LL A V+ +EKD Sbjct: 6 AKKSLGQNFLQDMNIARKIVDALEPGHKDRVLEIGPGKGVLT-ALLADRAGLVLGVEKDY 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + P L+ + DAL++D+ + + ++II NLPYNI LL++ Sbjct: 65 ----FLTFALDRCPG-LQAVNMDALQLDWSRL-DRWPGLKIIGNLPYNIAQTLLWDM--- 115 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ ++ QKEV +RITA YG LS+ T ++F++SP VF P P Sbjct: 116 AAGCRSFDRAVVMVQKEVAQRITAGPGGKEYGALSIWLQSFTTPRVLFNVSPGVFRPRPS 175 Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGIE 256 V S+V+ P + I L ++ + F RRK L + LK + L Q G++ Sbjct: 176 VDSSVLELRPLPADKIFFVPRDLARVVKTMFQNRRKQLGRILKTYWNDRRKIALEQCGLD 235 Query: 257 TNLRAENLSIEDFCRITNIL 276 R E LS EDF ++ L Sbjct: 236 PRARPEQLSPEDFQGLSKCL 255 >gi|322435995|ref|YP_004218207.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9] gi|321163722|gb|ADW69427.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9] Length = 271 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 11/261 (4%) Query: 22 KK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 +K +GQNFL+D + +IA S G L T++EIG G G +T++L T R++I +E D+ Sbjct: 5 RKPKLGQNFLVDDDARHRIAGSLGDLSTRTIVEIGPGHGAITEILATRC-RRLIALELDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L ++PN +++I+ D LK DF + +I NLPY I + +L + +A Sbjct: 64 SLAAELTFRFRENPN-VQVIETDVLKFDFASIAEEGETLDVIGNLPYYITSDILLHLFAA 122 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + Q+EV +R++A YG LS T + +F + P F P P Sbjct: 123 APLLRRAALM---MQREVADRVSAHPGVRDYGLLSASTQMYAQVDNLFTLPPAAFNPPPD 179 Query: 201 VTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ--AGI 255 V STV+ F P + + ++ F ++RKTL +L+ G L Q A I Sbjct: 180 VFSTVLRLSFAPRFTELGVDPIGFDRFLRKCFAQKRKTLHNNLRVAGYSPEALAQWPATI 239 Query: 256 ETNLRAENLSIEDFCRITNIL 276 RAE LS+E + L Sbjct: 240 PPQARAEQLSLEQMSTLYGAL 260 >gi|20806642|ref|NP_621813.1| dimethyladenosine transferase (rRNA methylation) [Thermoanaerobacter tengcongensis MB4] gi|27151574|sp|Q8RDC8|RSMA_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|20515090|gb|AAM23417.1| Dimethyladenosine transferase (rRNA methylation) [Thermoanaerobacter tengcongensis MB4] Length = 268 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 142/269 (52%), Gaps = 16/269 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNF+ D N+L KI +SG + V+E+G G G LT+ L +KV+ E Sbjct: 1 MKAKKKWGQNFIFDKNLLSKIVRASGVGEEDFVLEVGTGHGGLTEELAK-KVKKVVSFEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLF 135 D++ F + ++ + N + II +D L+VD + + +++ANLPY I + ++ Sbjct: 60 DKELFEMSREKLKIYKNVV-IINEDILEVDLLEIAQEHFDGNSFKVVANLPYYITSPIIM 118 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + +T+L QKEV ERI A + YG L+V ++ K ++F++ P VF Sbjct: 119 KMLDCK----LVKEMTVLVQKEVAERICALPGTKDYGMLTVFVNFKAKPEILFNLPPKVF 174 Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ 252 P PKV S+++ + P+ + ++ + AFG+RRK L SLK LG + +LH+ Sbjct: 175 VPPPKVESSLLKLKVYDKPLVEVKDEKLFSEVVRAAFGQRRKVLSNSLKVLGFSKEVLHE 234 Query: 253 ----AGIETNLRAENLSIEDFCRITNILT 277 GI R E LSI+ F + N L Sbjct: 235 TLLKVGISPQARGETLSIDQFANLANALY 263 >gi|50842010|ref|YP_055237.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202] gi|289424169|ref|ZP_06425952.1| dimethyladenosine transferase [Propionibacterium acnes SK187] gi|289428439|ref|ZP_06430125.1| dimethyladenosine transferase [Propionibacterium acnes J165] gi|295130092|ref|YP_003580755.1| dimethyladenosine transferase [Propionibacterium acnes SK137] gi|62900512|sp|Q6AAD7|RSMA_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50839612|gb|AAT82279.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202] gi|289154866|gb|EFD03548.1| dimethyladenosine transferase [Propionibacterium acnes SK187] gi|289158411|gb|EFD06628.1| dimethyladenosine transferase [Propionibacterium acnes J165] gi|291376481|gb|ADE00336.1| dimethyladenosine transferase [Propionibacterium acnes SK137] gi|313765357|gb|EFS36721.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA1] gi|313772654|gb|EFS38620.1| dimethyladenosine transferase [Propionibacterium acnes HL074PA1] gi|313792880|gb|EFS40947.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA1] gi|313802667|gb|EFS43889.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA2] gi|313806680|gb|EFS45187.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA2] gi|313810877|gb|EFS48591.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA1] gi|313814612|gb|EFS52326.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA1] gi|313815236|gb|EFS52950.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA1] gi|313817223|gb|EFS54937.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA2] gi|313821715|gb|EFS59429.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA1] gi|313824394|gb|EFS62108.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA2] gi|313826751|gb|EFS64465.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA1] gi|313828541|gb|EFS66255.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA2] gi|313831996|gb|EFS69710.1| dimethyladenosine transferase [Propionibacterium acnes HL007PA1] gi|313834464|gb|EFS72178.1| dimethyladenosine transferase [Propionibacterium acnes HL056PA1] gi|313840303|gb|EFS78017.1| dimethyladenosine transferase [Propionibacterium acnes HL086PA1] gi|314916000|gb|EFS79831.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA4] gi|314916905|gb|EFS80736.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA1] gi|314921546|gb|EFS85377.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA3] gi|314926820|gb|EFS90651.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA3] gi|314931130|gb|EFS94961.1| dimethyladenosine transferase [Propionibacterium acnes HL067PA1] gi|314954813|gb|EFS99219.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA1] gi|314958979|gb|EFT03081.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA1] gi|314961274|gb|EFT05375.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA2] gi|314964298|gb|EFT08398.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA1] gi|314969398|gb|EFT13496.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA1] gi|314974466|gb|EFT18561.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA1] gi|314977344|gb|EFT21439.1| dimethyladenosine transferase [Propionibacterium acnes HL045PA1] gi|314980500|gb|EFT24594.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA2] gi|314985557|gb|EFT29649.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA1] gi|314987513|gb|EFT31604.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA2] gi|314989021|gb|EFT33112.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA3] gi|315078686|gb|EFT50717.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA2] gi|315081854|gb|EFT53830.1| dimethyladenosine transferase [Propionibacterium acnes HL078PA1] gi|315082653|gb|EFT54629.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA2] gi|315086362|gb|EFT58338.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA3] gi|315087610|gb|EFT59586.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA1] gi|315097535|gb|EFT69511.1| dimethyladenosine transferase [Propionibacterium acnes HL038PA1] gi|315099754|gb|EFT71730.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA2] gi|315101941|gb|EFT73917.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA1] gi|315106552|gb|EFT78528.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA1] gi|315110340|gb|EFT82316.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA2] gi|327331611|gb|EGE73350.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA2] gi|327333594|gb|EGE75314.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA3] gi|327445378|gb|EGE92032.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA2] gi|327446992|gb|EGE93646.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA1] gi|327449971|gb|EGE96625.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA2] gi|327454815|gb|EGF01470.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA3] gi|327455672|gb|EGF02327.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA2] gi|327456839|gb|EGF03494.1| dimethyladenosine transferase [Propionibacterium acnes HL092PA1] gi|328755871|gb|EGF69487.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA1] gi|328756654|gb|EGF70270.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA2] gi|328758625|gb|EGF72241.1| dimethyladenosine transferase [Propionibacterium acnes HL020PA1] gi|328761742|gb|EGF75257.1| dimethyladenosine transferase [Propionibacterium acnes HL099PA1] gi|332674932|gb|AEE71748.1| ribosomal RNA small subunit methyltransferase A [Propionibacterium acnes 266] Length = 298 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 22/287 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ I + P K GQNF+ D N +++I + VIE+G G G+LT L Sbjct: 8 NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGL 67 Query: 66 LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 L GA +V+ IE D+ L + RLE++ DAL V K + P + Sbjct: 68 LETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTAL 123 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPYN+ +L + ++ P W + ++ Q EV +R+ A S YG S W Sbjct: 124 VANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWY 180 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE------SLKKITQEAFGKRRK 235 +A + ++ P VF+P P V S ++ P + + ++ AF RRK Sbjct: 181 AEAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRK 240 Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR +L L G L+ AGI+ R E L I D R+ L Sbjct: 241 MLRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVVEALA 287 >gi|330752527|emb|CBL87475.1| dimethyladenosine transferase [uncultured Sphingobacteria bacterium] Length = 260 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 20/268 (7%) Query: 19 IIPK--KYMGQNFLLDLNILKKIAESSGSLDG----ITVIEIGAGPGNLTQMLLTLGARK 72 PK K GQ+FL+D +L+ I + + +IEIG G G LTQ + Sbjct: 3 HTPKHNKAFGQHFLVDQGVLESIVAAIQKEEQGVSVDHLIEIGPGDGALTQFFVDQP--N 60 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +E D ++ L + + I D L+ + + F P+ + N PYNI ++ Sbjct: 61 FSALEIDSRWHRRLVERYPASEEK--IHLADVLRTNLLEKFE--PPMAVFGNFPYNISSQ 116 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++F + P+ + +FQKEV R+ A+ S YG SVLT + ++FDI+ Sbjct: 117 IVFKILDNREHVPW---VVGMFQKEVAYRLAAKHGSKVYGVTSVLTQAYYEVDILFDIAS 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S+V+ + +P C +L+ + + AFG+RRK LR SLK L + Sbjct: 174 SSFDPPPKVESSVLVMRRYRTDMPNCTYGALRHVVKTAFGQRRKMLRNSLKFLDIAHREE 233 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 +R E L +E F + + + Sbjct: 234 LL----TMRPEQLPLETFIELAELYSKQ 257 >gi|42526590|ref|NP_971688.1| dimethyladenosine transferase [Treponema denticola ATCC 35405] gi|62900552|sp|Q73NS2|RSMA_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|41816783|gb|AAS11569.1| dimethyladenosine transferase [Treponema denticola ATCC 35405] Length = 293 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 14/282 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + LK++L +K GQNFL+D + + G V E+G G G +T + Sbjct: 13 DSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYL 72 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LL G + E D+ F +LK I ++ +I+ D K P Sbjct: 73 LLEKGVH-LTAFEIDKGFISLLKKIFLENSKQNFTLIEGDVQKNWLPYLIEHGKPNVFFG 131 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYNI + L+ + + A ++++ QKE ERITA+ + +Y SVL + Sbjct: 132 NLPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYE 188 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242 ++ I F+P P V S + F + KI + F RRK ++ +L Sbjct: 189 CKIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKNFKLFIKIVKALFSSRRKNIKNNLG 248 Query: 243 RLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 N +L ++G+ NLRAE+L++ DF +++I+ Sbjct: 249 SWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290 >gi|89519294|gb|ABD75772.1| hypothetical protein [uncultured bacterium] Length = 731 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 9/227 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK++GQ+FL + ++ ++I ++ G TV+EIG+G G LT+ L+ L +++ +E Sbjct: 23 VRPKKHLGQHFLTNRSVSRRIVDALRYRPGDTVLEIGSGKGILTEPLMELDI-QLVTVEI 81 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 DQ+ L D L IQDD LKVD ++ P II N PYNI +++ F + Sbjct: 82 DQESIRYLLDKWPDLKGSL--IQDDFLKVDLQRI--CGRPFHIIGNFPYNISSQIFFRIL 137 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + S+ + QKEV +RI + S YG LSVL +F + P FFP Sbjct: 138 E---YRHLVTSVVCMVQKEVADRIASPPGSKEYGILSVLLRAYFDIESLFSVKPGSFFPP 194 Query: 199 PKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 P+VTS VI + +PC ++ + F +RRK +R S+K + Sbjct: 195 PQVTSGVIRLTRNQTETLPCDEALFFRVVKTLFNQRRKMIRNSIKSI 241 >gi|15594935|ref|NP_212724.1| dimethyladenosine transferase [Borrelia burgdorferi B31] gi|195941723|ref|ZP_03087105.1| dimethyladenosine transferase [Borrelia burgdorferi 80a] gi|216264801|ref|ZP_03436793.1| dimethyladenosine transferase [Borrelia burgdorferi 156a] gi|218249411|ref|YP_002375098.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7] gi|223888886|ref|ZP_03623477.1| dimethyladenosine transferase [Borrelia burgdorferi 64b] gi|224532720|ref|ZP_03673337.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23] gi|225548676|ref|ZP_03769723.1| dimethyladenosine transferase [Borrelia burgdorferi 94a] gi|226321896|ref|ZP_03797422.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26] gi|27151556|sp|O51536|RSMA_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729758|sp|B7J2F3|RSMA_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2688507|gb|AAB91517.1| dimethyladenosine transferase (ksgA) [Borrelia burgdorferi B31] gi|215981274|gb|EEC22081.1| dimethyladenosine transferase [Borrelia burgdorferi 156a] gi|218164599|gb|ACK74660.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7] gi|223885702|gb|EEF56801.1| dimethyladenosine transferase [Borrelia burgdorferi 64b] gi|224512338|gb|EEF82722.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23] gi|225370706|gb|EEH00142.1| dimethyladenosine transferase [Borrelia burgdorferi 94a] gi|226233085|gb|EEH31838.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26] gi|312147958|gb|ADQ30617.1| dimethyladenosine transferase [Borrelia burgdorferi JD1] Length = 281 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 146/280 (52%), Gaps = 14/280 (5%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T++LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 68 AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 K + DI + F+P+PKV ST + IP N I + K+ + F RRK L+ Sbjct: 179 SHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKNNI-KNFKEFNKLVRTVFSNRRKKLKN 237 Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNIL 276 ++ + L + ++ + R EN+S+E+F +I+N L Sbjct: 238 TIINFITNKATLRENFLKEYLDKRPENISVEEFIQISNTL 277 >gi|146093446|ref|XP_001466834.1| ribosomal RNA adenine dimethylase family protein [Leishmania infantum JPCM5] gi|134071198|emb|CAM69883.1| putative ribosomal RNA adenine dimethylase family protein [Leishmania infantum JPCM5] Length = 374 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 13/246 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +KT S I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL Sbjct: 57 SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KVI E D + L P ++L+II+ + L+ DF F + +AN Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + + IS + F P PKV S+VI P E + + F ++ K + Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRPDVDFEEWDGLVKMLFSRKNKKSSSIFRTK 285 Query: 245 GGENLL 250 L Sbjct: 286 AAVQAL 291 >gi|116669774|ref|YP_830707.1| dimethyladenosine transferase [Arthrobacter sp. FB24] gi|166221643|sp|A0JU87|RSMA_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|116609883|gb|ABK02607.1| dimethyladenosine transferase [Arthrobacter sp. FB24] Length = 295 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 123/284 (43%), Gaps = 18/284 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K +GQNF++D N +++I ++ TV+E+G + L Sbjct: 19 ASDVRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAADIHADETVLEVGP-GLGSLTLGL 77 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A+ V+ +E D L + ++ DA+KV P ++ Sbjct: 78 LDAAKSVVAVEIDPVLAAKLPGTVQQWRPGAAKDFHLVLADAMKVTELPV----EPTALV 133 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + P ++ Q EV +R+ A S YG SV W + Sbjct: 134 ANLPYNVAVPVVLHLL---QHFPSLRHGLVMVQDEVADRLAAGPGSKTYGVPSVKAAWYS 190 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+PK+ S ++ F P+ E + + AF +RRKTLR +L Sbjct: 191 SMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPVTSATREQVFAVIDAAFAQRRKTLRAAL 250 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 G E L AG++ R E + I F RI D Q Sbjct: 251 AGWAGSAAEAEQCLLAAGVDPTARGEVIDIAAFARIAEARQDRQ 294 >gi|298675523|ref|YP_003727273.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303] gi|298288511|gb|ADI74477.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303] Length = 269 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 31/284 (10%) Query: 10 LKTILSHYKIIPKKYMG----QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + ++L Y +I G Q+FL+D N L +I +S+ + TV+EIGAG GNLT+ + Sbjct: 2 IDSLLDEYGVI-----GGDHDQHFLVDDNFLNQIVDSAELTENDTVLEIGAGIGNLTEKI 56 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 K+ +E D IL + + + N +EII+ D L ++ +F +++ANL Sbjct: 57 AET-VHKLYAVELDPNLCDILIERFADYDN-VEIIEGDILDIELPEF------NKVVANL 108 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+I + + F + + +E L++Q E R+ + KNS Y RL+V T + A+ Sbjct: 109 PYSISSHITFKLLKHE-----FELGILMYQYEFARRMVSPKNSKDYSRLTVTTNFFADAS 163 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--- 241 ++ + F P+P+V S V+ IP E FG+RRK LR ++ Sbjct: 164 IIMKVPRSAFKPAPEVKSAVVKLIPRPASFDVVDEDFFLTFVTAVFGQRRKKLRNAILNT 223 Query: 242 -KRLGGENLLHQAGIET----NLRAENLSIEDFCRITNILTDNQ 280 +LG N+ N RAENL + I N L + + Sbjct: 224 NSKLGIANVKEVVNKLPDEYMNKRAENLEPSELAYIANQLFNFK 267 >gi|124265397|ref|YP_001019401.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1] gi|166221677|sp|A2SC77|RSMA_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|124258172|gb|ABM93166.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1] Length = 256 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 117/253 (46%), Gaps = 11/253 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K I +K GQ+FL D ++ I G ++EIG G G +T L+ + V+E Sbjct: 2 KHIARKRFGQHFLSDAAVVDAIVGLIDPRPGQALVEIGPGLGAMTDPLVARCEH-LTVVE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFN 136 + L++I+ D L+VDF S +RI+ NLPYNI T +LF+ Sbjct: 61 L-----DRDLAARLRRRAELQVIESDVLRVDFAALAMASAGRLRIVGNLPYNISTPILFH 115 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + A E + QKEV ER+ A S YGRLSV+ WR + D+ P F Sbjct: 116 LLPAAAQ---VEDQHFMLQKEVVERMAAAPCSKDYGRLSVMLQWRYDIESVLDVPPEAFE 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S V+ +P P L ++ AF +RRK LR +L + + Sbjct: 173 PPPRVNSAVVRMLPFPAPPAVDAALLGELVATAFSQRRKLLRHTLGKWLDAREFSGT-FD 231 Query: 257 TNLRAENLSIEDF 269 T RAE + + D+ Sbjct: 232 TQRRAEEVPVADY 244 >gi|322500967|emb|CBZ36044.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 374 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 13/246 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +KT S I+ K GQ+ L + ++ I E + VIEIG G GNLT+ LL Sbjct: 57 SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 A+KVI E D + L P ++L+II+ + L+ DF F + +AN Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + + Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + + IS + F P PKV S+VI P E + + F ++ K + Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRPDVDFEEWDGLVKMLFSRKNKKSSSIFRTK 285 Query: 245 GGENLL 250 L Sbjct: 286 AAVQAL 291 >gi|295698578|ref|YP_003603233.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA] gi|291157440|gb|ADD79885.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA] Length = 263 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 90/261 (34%), Positives = 130/261 (49%), Gaps = 5/261 (1%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D + +I ++IEIG G GNLT + + + I IE D Sbjct: 4 KKRFGQNFLSDSIVQDRIVTYFAPKSDQSIIEIGTGLGNLTIPIYHVIKKSFITIEIDAD 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++I+ D +K+DF+ S RII +LPYNI ++ + S Sbjct: 64 LIKHLLSFYPDIFQVVKILNSDIMKLDFDLIMKKSLKYRIIGSLPYNIAIPIMVRFFSYH 123 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + QKE+ +R+ A N YGR SVL + +F ISP+ F P PKV Sbjct: 124 KQ---LIDMHFVLQKEIVDRLIASPNIKLYGRTSVLFQYHFSINPIFHISPYSFRPIPKV 180 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 ST + F P+ N C + LK IT+ AF +RRK + SLK Q I+ N+ Sbjct: 181 NSTFVRFKPYKNRIYPICEVNLLKLITRVAFHQRRKKILNSLKEFFNIEDYSQLCIDYNM 240 Query: 260 RAENLSIEDFCRITNILTDNQ 280 RAENL+I ++C++TN L+ + Sbjct: 241 RAENLTILEYCKLTNWLSKKE 261 >gi|210629940|ref|ZP_03296187.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279] gi|210160757|gb|EEA91728.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279] Length = 331 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 81/325 (24%), Positives = 129/325 (39%), Gaps = 60/325 (18%) Query: 1 MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + N S + + IL + + K +GQNFL+D +++++I + + V+E+G G Sbjct: 1 MTTSPLANPSAT-REILEAFGLATKHRLGQNFLIDNHVIERIMDLAELTGSERVLEVGPG 59 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115 G LT L+ A +V IE D + P+L + HPN I DAL V + Sbjct: 60 IGTLTLALV-QAAGRVTSIEMDSELEPVLSAHAIDHPN-FNFIMGDALAVPPAQIAEALG 117 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 ++ANLPYN+ ++ + P ++ QKEV +RI A + YG + Sbjct: 118 GESELLVANLPYNVAATIILQFFQTM---PSLRRAVVMVQKEVADRIAAVAGTKVYGAYT 174 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------------ 223 V + T F++ P F P+P V S V+ P + Sbjct: 175 VKLSLYGEVTGRFEVPPRCFMPAPHVDSAVVRIDRVGFPGTLSDRRVDAACGTDAPVSTA 234 Query: 224 --------------------------------KITQEAFGKRRKTLRQSLKRLGGEN--- 248 ++ AF +RRKT+R S+ G + Sbjct: 235 GSDGVLTCDSNGGQDGASVLVLAGAPSAEDIARVVDAAFAQRRKTIRNSMSANGFDKAAL 294 Query: 249 --LLHQAGIETNLRAENLSIEDFCR 271 Q I + RAE LS +F + Sbjct: 295 DAAFAQCDIASTARAETLSTIEFVQ 319 >gi|303388914|ref|XP_003072690.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC 50506] gi|303301832|gb|ADM11330.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC 50506] Length = 277 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 35/275 (12%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K GQ+ L ++ ++ I E + TV+EIG G GNLT LL A+KVI E D Sbjct: 5 KFNKQHGQHILKNMGVIDTIIERAKIKPTDTVLEIGGGTGNLTMKLL-QKAKKVICYEID 63 Query: 80 QQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + L + P + ++ DALK DF F I+NLPY I + +F Sbjct: 64 PRLAAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCISNLPYQISSPFMFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + D ++ ++FQ+E +R+ A+ S Y RLSV + + +S + F Sbjct: 118 LLKYD-----FKCAFIMFQREFSDRLVAKPGSSEYCRLSVGAQMLAQVDHVLKVSKNSFV 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----------- 245 P PK+ S+ + P + P LE + + F ++ KTL+ + + Sbjct: 173 PPPKIESSFVRIEPRIPRPPIDLEEFDRFLKICFLRKNKTLKANFRNSSLVSKVKGNPSF 232 Query: 246 --------GENLLHQAGIETNLRAENLSIEDFCRI 272 E +L +A ++ RA +SI+DF + Sbjct: 233 ENTTPEEVFEKVLSRAELD-GARAAKMSIDDFLAL 266 >gi|302342375|ref|YP_003806904.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075] gi|301638988|gb|ADK84310.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075] Length = 284 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 129/279 (46%), Gaps = 16/279 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + +L + K GQNFL + I S+ V+EIG G G LT A Sbjct: 4 RLLLERLGLHASKARGQNFLTQPATAQAIVASAAIGPEDFVVEIGPGLGALTVA-AGRLA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128 +V+ +E D+ L D+ ++ +E DAL +D+ P+ +I NLPYN Sbjct: 63 SRVLAVEIDRGVHRALMDVLAEEGLQNVEARLMDALDLDWPATREQAGRPLVVIGNLPYN 122 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + LLF + P W + TL+ QKEV R+ A+ +GRL V+ + Sbjct: 123 ITSPLLF---ALLAAAPCWRAATLMVQKEVATRLAAKPGGKDWGRLGVMVQSLCQVRAGV 179 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRL 244 +S FFP P V+S ++H P P+P L ++ + AFG+RRKT+ +L Sbjct: 180 TLSRGQFFPEPNVSSQIVHLTPLEQPLPAALGLSQAWFGQVVKAAFGQRRKTVANALAGG 239 Query: 245 GG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G E+ L +A + + RAE LSI + I LT Sbjct: 240 LGLERGRVEDALGRAAVAPSRRAETLSIAELGAIALALT 278 >gi|239917075|ref|YP_002956633.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665] gi|281414463|ref|ZP_06246205.1| dimethyladenosine transferase [Micrococcus luteus NCTC 2665] gi|239838282|gb|ACS30079.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665] Length = 307 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 20/285 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + ++ I + + P K GQNF++D N +++I +++ V+EIG + Sbjct: 15 SAADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVSADEHVLEIGP-GLGSLTLG 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS---- 117 L A V +E D L +++ + L ++ DA+ + + + Sbjct: 74 LLDAAAAVTAVEIDPVTAARLPRTAAEFRPGAEDALAVLHADAMTLSEQALAEVRPAAAA 133 Query: 118 --PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 P ++ANLPYN+ +L + ++ P ++ Q+EV +R+ A S YG S Sbjct: 134 GSPTALVANLPYNVAVPVLLHALA---VLPGLRHGLVMVQEEVADRLAAGPGSKVYGVPS 190 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRR 234 W I VF+P+P++ S ++ F P + + AF +RR Sbjct: 191 AKAAWYADVRKAGTIGTQVFWPAPRIHSGLVAFTRREPPAGSASRREVFAVVDAAFAQRR 250 Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 KTLR +L G E+ L AG++ R E L I F RI Sbjct: 251 KTLRAALASWAGSPPAAEDALVAAGVDPRARGEALDIAAFARIAE 295 >gi|153823926|ref|ZP_01976593.1| dimethyladenosine transferase [Vibrio cholerae B33] gi|126518553|gb|EAZ75776.1| dimethyladenosine transferase [Vibrio cholerae B33] Length = 209 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 5/200 (2%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H +K GQNFL D I+ I + G ++EIG G G +T+ + K V Sbjct: 6 HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D+ L++ + ++L I + DA++ DF++ ++ +R+ NLPYNI T L+F Sbjct: 65 IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + + QKEV R+ A + YGRL+V+ + K + ++ P F Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAF 180 Query: 196 FPSPKVTSTVIHFIPHLNPI 215 P PKV S V+ +P+ + Sbjct: 181 VPPPKVDSAVVRLVPYEDLP 200 >gi|194476720|ref|YP_002048899.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella chromatophora] gi|171191727|gb|ACB42689.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella chromatophora] Length = 284 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 11/273 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQ++L D +IL KI ++ V+EIG+G G LT+ LL A + +E Sbjct: 5 GHAARKDFGQHWLKDKSILNKIILAADLSADDIVLEIGSGRGALTESLLASSALLTLAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ +L+ H R +I+ D L+++F + +P +++AN+PYNI LL Sbjct: 65 LDRDLASMLRKRLGTH-TRFALIEGDILRINFPN-ASTYTPNKVVANIPYNITGPLLKRL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + P ++ + LL Q+EVG+RI A Y LSV + + + PH F Sbjct: 123 LGSLNKPLNKPYKKIVLLVQQEVGDRIRANPGHTSYSALSVKMQLLARCYSVCIVPPHCF 182 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251 PSP V S VI P + +P ++++ + F RRK LR SL L L Sbjct: 183 DPSPSVVSEVIVLEPLNPDQHLMPELAIRVEELLKFCFSSRRKMLRNSLTNLVPIKFLEI 242 Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQD 281 ++GI R + L+ + + L+ D Sbjct: 243 VIAKSGISLEQRPQELTPSQWVDLAASLSKFSD 275 >gi|239906699|ref|YP_002953440.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1] gi|239796565|dbj|BAH75554.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1] Length = 276 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 120/262 (45%), Gaps = 14/262 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 K+ +GQNFL+D N+ KI TVIEIG G G L+ +L G R + +EKD+ Sbjct: 19 AKRSLGQNFLVDPNVSAKIVAQLRIGPEDTVIEIGPGRGALSGHILAAGPRAYLALEKDR 78 Query: 81 QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L ++ HP + DAL++D+ + + +++ NLPYNI + LL++ S Sbjct: 79 ELAARLPREHPGAHPALV-----DALRLDWSRLDALDG-AKLVGNLPYNIASPLLWDICS 132 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + Q EV R+ A YG L+ T + F +SP VF P P Sbjct: 133 QAS---RFAVGVFMVQHEVALRLCAAPGGRQYGALTAWTSSFARFDYCFKVSPGVFRPQP 189 Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---GI 255 KV S V+ P P L + + F RRK L LK E L GI Sbjct: 190 KVDSAVVAVTPRASKERPEDPAGLATLLKRLFSMRRKQLAGILKPHWDEALAQACAGHGI 249 Query: 256 ETNLRAENLSIEDFCRITNILT 277 E +R E L+ F ++ +L Sbjct: 250 EGRVRPETLTPGQFQQLAKLLK 271 >gi|170575593|ref|XP_001893303.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi] gi|158600773|gb|EDP37864.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi] Length = 364 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 151/301 (50%), Gaps = 26/301 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 SLK+ L Y++ KK + QN+L+D+N+ +KI + G V+EIG GPG++T+ + Sbjct: 10 PLPSLKSFLYAYQLQAKKILSQNYLMDMNLTRKIVRQAEMKKGDYVVEIGPGPGSITRAI 69 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 L + R++ VIE D +F P L+ + R+ I + D LK + E+ ++ + Sbjct: 70 LEMDCRRLDVIEIDHRFVPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEE 129 Query: 117 ---SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNS 168 II NLP+NI + L+ ++ W L L FQ EV ER+ + +S Sbjct: 130 DRLPTAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRVPLLLTFQMEVAERLCSPIDS 189 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQ 227 P R+S+++ + T+ ++F I F PSPKV V+ F+P +P I E ++K+ + Sbjct: 190 PFRARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFVPRQDPLIKTSFEVVEKVCR 249 Query: 228 EAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F R+K + + ++ L + +LL + I+ A L +E F I + ++ Sbjct: 250 RIFNYRQKYVIKGVRTLYPKELAKHLADDLLKRCRIDPTTTAICLGVEQFADICYVYEEH 309 Query: 280 Q 280 Sbjct: 310 C 310 >gi|209877254|ref|XP_002140069.1| dimethyladenosine transferase protein [Cryptosporidium muris RN66] gi|209555675|gb|EEA05720.1| dimethyladenosine transferase protein, putative [Cryptosporidium muris RN66] Length = 361 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 126/279 (45%), Gaps = 39/279 (13%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI E+S V+EIG G GNLT LL L ARKVI + D + Sbjct: 54 KKKGQHLLKNPGILDKIVEASDIKPTDIVLEIGPGTGNLTMRLLPL-ARKVIAFDIDPRM 112 Query: 83 FPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K S + N LE+ + DAL+ D KF ANLPY I + +F +S Sbjct: 113 VAEVKKRSMNAGYNNLEVKEGDALRSDLGKF------DICTANLPYQISSPFVFRILSHK 166 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQ+E R+ A+ HY RL++ T K + + P F P PKV Sbjct: 167 ---PTFRCAVLMFQEEFALRLLAEPGDKHYCRLTLNTKLLCKVIRVCKVLPGSFNPPPKV 223 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---------- 251 S V+ FIP PIP + + F +++KT+R + K +L Sbjct: 224 NSMVVKFIPKTCPIPVNFREWDGLMRICFLRKKKTIRANFKGSSTLTMLENNYKTWCSLN 283 Query: 252 ----QAGIE--------------TNLRAENLSIEDFCRI 272 Q + + RA N+SI+++ ++ Sbjct: 284 NQVPQNNVPFKEFVFKILENTGLESKRAFNISIDEYFKL 322 >gi|111115418|ref|YP_710036.1| dimethyladenosine transferase [Borrelia afzelii PKo] gi|123145677|sp|Q0SMR8|RSMA_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110890692|gb|ABH01860.1| dimethyladenosine transferase [Borrelia afzelii PKo] Length = 281 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 14/281 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ NI +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQTLKEKKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 68 AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI + F+P+PKV ST + IP + I + K+ + F RRK L+ Sbjct: 179 SHFTVIKIIDIGGNNFYPAPKVKSTTLKLIPKKHNI-KDFKEFNKLIRTVFSSRRKKLKN 237 Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNILT 277 ++ + +L + ++ + R EN+S+E+F +I+N LT Sbjct: 238 TIINFITNKAILRENFLKEYLDKRPENISVEEFIQISNTLT 278 >gi|15828486|ref|NP_325846.1| dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase)(16S rRNA dimethylase)(high level kasugamycin resistance protein KSGA) (kasugamycin dimethyltransferase) [Mycoplasma pulmonis UAB CTIP] gi|27151595|sp|Q98RJ3|RSMA_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|14089428|emb|CAC13188.1| DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N', N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE)(16S RRNA DIMETHYLASE)(HIGH LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN DIMETHYLTRANSFERASE) [Mycoplasma pulmonis] Length = 252 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 15/259 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D NI+ KI +SS + +IEIG G G LT++L+ A KV+ E Sbjct: 1 MRAKKRFGQNFLIDQNIINKIVDSSEV-ENRNIIEIGPGKGALTKILVK-KANKVLAYEI 58 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 DQ IL S +I D LK + F+ S I+AN+PY I + ++F I Sbjct: 59 DQDMVNILNQQIS--SKNFVLINKDFLK----EEFDKSQNYNIVANIPYYITSDIIFKII 112 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ TL+ QKEV RI A++N + +LS+ + ++ D+S + F P Sbjct: 113 ENHQ---IFDQATLMVQKEVALRILAKQNDSEFSKLSLSVQFFFDVFLICDVSKNSFRPI 169 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAG 254 PKV S VI + N + + + AF RRKTL +LK E Sbjct: 170 PKVDSAVIKLVKKKNKDFSLWKEYFEFLKIAFSSRRKTLLNNLKYFFNEQKILKFFELKN 229 Query: 255 IETNLRAENLSIEDFCRIT 273 + +RA+N+ EDF + Sbjct: 230 YDPKVRAQNIKNEDFYALF 248 >gi|330836977|ref|YP_004411618.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta coccoides DSM 17374] gi|329748880|gb|AEC02236.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta coccoides DSM 17374] Length = 291 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 15/280 (5%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + +++ +L + K GQNFLL I K+I ++ G+T+ EIG G G LT + Sbjct: 8 DSPNAINNLLQEESLAMNKQFGQNFLLPQAIRKRIVDALEPSAGLTIWEIGPGLGALTVL 67 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL ++ E D+ F IL++ + +++ D LK + + P RI N Sbjct: 68 LLEKKC-QLTAFEIDKGFCSILREKAFADETGFRLVEGDFLKTWEAVYGSGGVPHRICGN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+G+ + + P + QKEV ER+T++ + L++L + Sbjct: 127 LPYNVGSVCIARLLERQCLPDI---MVFTVQKEVAERLTSRDGDKNRSTLTLLADIDYET 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQS-- 240 ++F I F+PSP VTS + P+ + ++AF RRKT++ + Sbjct: 184 RLLFTIGGGAFYPSPDVTSAAVGMYRRATPLVDAALRPVYLSLVKDAFSHRRKTMKNNLL 243 Query: 241 -------LKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 L + G + +L +G+ RAE LS E+ + Sbjct: 244 QGEIGNTLGKDGVDAILANSGVNPQSRAEALSFEELKALA 283 >gi|320536299|ref|ZP_08036342.1| dimethyladenosine transferase [Treponema phagedenis F0421] gi|320146859|gb|EFW38432.1| dimethyladenosine transferase [Treponema phagedenis F0421] Length = 287 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 129/285 (45%), Gaps = 17/285 (5%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N +L + L + +K GQNFL+D N+ K + +S G + EIG G G +T + Sbjct: 7 NSPSALASFLKERDLGMRKKFGQNFLIDENMRKFLIDSLELQGGERIWEIGPGLGAMTFL 66 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL E D F L+ ++P +I+ DALK F P N Sbjct: 67 LLEKNVH-TTAFEIDSGFSDFLRKAYGENPL-FTLIEGDALKTWKAA-FEKEKPDCFFGN 123 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI +L+ + I A+ ++ L + QKEVG+R+ AQ NSP Y SVL Sbjct: 124 LPYNIAAKLIADTIEAEA---IFDKLLVTVQKEVGDRMRAQPNSPDYSSFSVLCNRYYDV 180 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR 243 T + I F+P P V S + + I C + ++ + F RRKTL+ + Sbjct: 181 TALRTIPSACFWPRPNVVSQALLLTKKTDLIDCKDNKLFFQLLRAFFSSRRKTLKNNFLA 240 Query: 244 LGGEN----------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 N +A I+++ RAE L + DF ++ +ILT Sbjct: 241 WQKSNPLYAAVDADTFFKKAEIDSSARAETLQVYDFLKLCDILTS 285 >gi|242210765|ref|XP_002471224.1| predicted protein [Postia placenta Mad-698-R] gi|220729783|gb|EED83652.1| predicted protein [Postia placenta Mad-698-R] Length = 322 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 12/230 (5%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + + I +++ V+E+G G GNLT +L A+ V +E D + Sbjct: 42 RFGQHILKNPQTAQSIVDTANLRPTDKVLEVGPGTGNLTVRILE-KAKHVTAVEMDPRMA 100 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L P +LEI+ D +K F I+N PY I + L+F +S Sbjct: 101 AELTKRVQGKPEQRKLEIMIGDFVKATLPYF------DVCISNTPYQISSPLIFRLLSHR 154 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + + L+FQ+E R+ A+ S + RLS K ++ +S + F P PKV Sbjct: 155 ---PLFRTAILMFQREFAMRLVARPGSEMWSRLSANVQLYAKVDLVMHVSKNNFRPPPKV 211 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 S+VI +P P P + + FG+R K + + + G +L Sbjct: 212 ESSVIRLVPRDPPPPVEFGEFDGLARIVFGRRNKMIHANFQAKGVMEMLE 261 >gi|221218035|ref|ZP_03589501.1| dimethyladenosine transferase [Borrelia burgdorferi 72a] gi|224533530|ref|ZP_03674119.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a] gi|225549493|ref|ZP_03770459.1| dimethyladenosine transferase [Borrelia burgdorferi 118a] gi|226321214|ref|ZP_03796749.1| dimethyladenosine transferase [Borrelia burgdorferi 29805] gi|221191983|gb|EEE18204.1| dimethyladenosine transferase [Borrelia burgdorferi 72a] gi|224513203|gb|EEF83565.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a] gi|225369770|gb|EEG99217.1| dimethyladenosine transferase [Borrelia burgdorferi 118a] gi|226233382|gb|EEH32128.1| dimethyladenosine transferase [Borrelia burgdorferi 29805] Length = 281 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 14/280 (5%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T++LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 68 AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 K + DI + F+P+PKV ST + IP I + K+ + F RRK L+ Sbjct: 179 SHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKTNI-KNFKEFNKLVRTVFSNRRKKLKN 237 Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNIL 276 ++ + L + ++ + R EN+S+E+F +I+N L Sbjct: 238 TIINFITNKATLRENFLKEYLDKRPENISVEEFIQISNTL 277 >gi|116624617|ref|YP_826773.1| dimethyladenosine transferase [Candidatus Solibacter usitatus Ellin6076] gi|116227779|gb|ABJ86488.1| dimethyladenosine transferase [Candidatus Solibacter usitatus Ellin6076] Length = 247 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 123/258 (47%), Gaps = 14/258 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P+K +GQ+FL + ++L +IA + VIEIG G G LT+ LL R VI IE D Sbjct: 1 MPQK-LGQHFLSNGSVLDRIALAVCPEGEELVIEIGPGKGALTEKLLQRSGR-VIAIELD 58 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ +RL++I D L D ++ P+ I NLPY I + +L + Sbjct: 59 PVLVEYLRQKFEG-ESRLQVIHADVLHTDLAQW----GPVPIAGNLPYYITSPILERSVR 113 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A L QKEV R+ A YG L++ T ++F++ P F P P Sbjct: 114 AGAP-----RTVFLIQKEVAHRLVAHPGQRDYGYLTLQTALFADTKLLFEVKPGAFKPPP 168 Query: 200 KVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 KV S V+ PH + K +F ++RKTLR +L + G++L+ A E Sbjct: 169 KVDSAVVLLTPHGRDYGITDRDKFLKFLSHSFRQKRKTLRNNLFAVYGKDLID-AWPEAG 227 Query: 259 LRAENLSIEDFCRITNIL 276 LRAE + +E F + + Sbjct: 228 LRAEQIPMEKFVEMFRRI 245 >gi|312149423|gb|ADQ29494.1| dimethyladenosine transferase [Borrelia burgdorferi N40] Length = 281 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 147/280 (52%), Gaps = 14/280 (5%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T++LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 68 AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 KA + DI + F+P+PKV ST + IP N I + K+ + F RRK L+ Sbjct: 179 SHFKAIKILDIGENNFYPAPKVKSTTLKLIPKKNNI-KNFKEFNKLVRTVFSSRRKKLKN 237 Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNIL 276 ++ + L + ++ + R EN+S+E+F +I+N L Sbjct: 238 TIINFITNKATLKENFLKEYLDKRPENISVEEFIQISNTL 277 >gi|156084308|ref|XP_001609637.1| dimethyladenosine transferase protein [Babesia bovis T2Bo] gi|154796889|gb|EDO06069.1| dimethyladenosine transferase protein, putative [Babesia bovis] Length = 366 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 40/284 (14%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + IL KI ++ TV+EIG G GNLT L+ L ARKVI I+ Sbjct: 46 GMTFNKKFGQHMLKNPGILDKIILAAEIRSSDTVLEIGPGTGNLTIRLVPL-ARKVIAID 104 Query: 78 KDQQFFPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +K S + L++I+ DAL++ + KF ANLPY I + +F Sbjct: 105 IDNRMVGEVKKRCLSMGYSNLDVIEGDALRITYPKF------DVCTANLPYQISSPFVFK 158 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + L+FQKE ER+ A N YGRL++ T T + ++P F Sbjct: 159 LLSHR---PLFRCAVLMFQKEFAERLLASTNEAKYGRLAINTRLFCTVTRVCKVAPGSFN 215 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ-------------SLKR 243 P PKV S ++ +P P+ + + F ++R+TLR + K Sbjct: 216 PPPKVDSMIVKIVPREQPLVIDFVEWDGMIRVCFTRKRRTLRSLFKKQAILSVLEGNYKN 275 Query: 244 LGGEN---------------LLHQAGIETNLRAENLSIEDFCRI 272 N +L ++G+ N R+ +SI +F + Sbjct: 276 WCTINGKAPEPMPFKDYCMGILEESGLS-NRRSITVSIAEFLEL 318 >gi|163783970|ref|ZP_02178937.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] gi|159880766|gb|EDP74303.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] Length = 254 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 9/260 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K KK GQ+ L+ ++ KI ++ ++EIG G G LTQ +L +K+ IE Sbjct: 3 KFRTKKKFGQHLLISEGVISKIVDTIDVKLEDIIVEIGVGTGQLTQEILKRNPKKLYGIE 62 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ +PI+++ + N E+I+ D +V+ + + I+++ NLPYN+ + + Sbjct: 63 IDETAYPIIEERFKEFEN-FELIKKDFFEVNLYEIAE-NQKIKLVGNLPYNVSSLI---L 117 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I+ + E + QKEV E++T + + +Y L++ + + + F P Sbjct: 118 INTVFYIDIIERTVFMLQKEVAEKLTTKPKTKNYTFLTIFIQTFFEVEYVMSVPARFFSP 177 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S V+ P + ++ K F RRK LR EN+L I Sbjct: 178 PPKVISAVVRMFPKKDYPKIDKKNYKNFVSSLFSNRRKMLR----TKIDENILKSLNIPP 233 Query: 258 NLRAENLSIEDFCRITNILT 277 R E L EDF R+ + Sbjct: 234 TARVEELKPEDFLRLYEKIK 253 >gi|290996728|ref|XP_002680934.1| predicted protein [Naegleria gruberi] gi|284094556|gb|EFC48190.1| predicted protein [Naegleria gruberi] Length = 308 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 12/229 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 I +K GQ+ L++ ++ + E + TV+EIG G GN+T LL A+KVI Sbjct: 18 RTQGIQFQKSFGQHILINPGVIDHVIEKACIQPTDTVLEIGPGTGNMTVKLL-QKAKKVI 76 Query: 75 VIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 IE D + LK ++L+II DALKV+ F IANLPY I + Sbjct: 77 AIEVDPRMVVELKKRVQGTALESKLQIIHKDALKVELPYF------DLCIANLPYQISSP 130 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + F ++ P + L++Q+E +R+ A+ Y RLSV T + + +S Sbjct: 131 ITFKLLAHQ---PSFRVAYLMYQREFAQRLVAKPGDNLYCRLSVNTQLLARCDHVVKVSK 187 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + F P PKV S+++ P P P + + F +R K L Sbjct: 188 NSFRPPPKVESSIVRIEPKNPPPPINFLEWDGLARILFQRRNKQLGSVF 236 >gi|269120656|ref|YP_003308833.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386] gi|268614534|gb|ACZ08902.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386] Length = 276 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 13/269 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK GQNFL + IL++I + TVIEIG G G LT+ L A +V E D Sbjct: 13 RTKKKYGQNFLENKVILEEIFSYADINKTDTVIEIGPGLGFLTESLAE-KAGQVYAFEID 71 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 IL + S+ N L+II D + D + I+++AN+PY I + ++ I Sbjct: 72 DDLVKILSEKFSKVEN-LKIIHTDFMDYDLSEIVEKEKNIKVVANIPYYITSPIVGKLIK 130 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + ++ QKEV ERI+A S L+ + A +F + +F P P Sbjct: 131 ---YRDSIDEIYIMVQKEVAERISAVSPSSDISLLTHAVQFFGNAEYLFTVKKELFNPVP 187 Query: 200 KVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLH 251 KV S + + + K + AF +RK+L ++K LG + L Sbjct: 188 KVDSAFLGIKLYKDREYEKQIDEAEYFKYLKAAFSNKRKSLGNNMKNLGYDKQQTGSALE 247 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 + G + RAE S+++F N L D + Sbjct: 248 KTGKKPLARAEEFSVQEFIDFINALKDEK 276 >gi|260906056|ref|ZP_05914378.1| dimethyladenosine transferase [Brevibacterium linens BL2] Length = 302 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 24/287 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT+ + ++ I + + P K GQNF++D N ++ I S+ +V+EIG G G+ Sbjct: 1 MTLLT-ARDIREIAADIGLRPTKQKGQNFVIDPNTVRSIVASAKLQGHSSVVEIGPGLGS 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---------RLEIIQDDALKVDFEK 111 LT LL G V +E D+ L ++ + E++ DAL+V Sbjct: 60 LTLGLLEAG-HDVTAVEIDEVLAQRLPATVKKYGHTDDAAEGAANFELVNADALRVTE-- 116 Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 ++P ++ANLPYN+ +L +++ P +S+ ++ Q EV ER+ A S Y Sbjct: 117 --LPTAPEALVANLPYNVAVPVLLHFLE---IFPSLKSVLVMVQLEVAERLAAGPGSRTY 171 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAF 230 G SV W T+ I +VF+P+P + S ++H L + AF Sbjct: 172 GVPSVKAQWYGDVTLAGRIGKNVFWPAPNIDSGLVHIDVTRTQRDLQQRRRLFSVVDAAF 231 Query: 231 GKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 +RRKTLR +L G E L AGI+ R E L + DF R+ Sbjct: 232 AQRRKTLRAALATWAGSPQQAEECLRAAGIDPKTRGEALGVADFERL 278 >gi|216263454|ref|ZP_03435449.1| dimethyladenosine transferase [Borrelia afzelii ACA-1] gi|215980298|gb|EEC21119.1| dimethyladenosine transferase [Borrelia afzelii ACA-1] Length = 274 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 14/281 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ NI +KI ES + + EIG G G Sbjct: 1 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 61 AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 116 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI + F+P+PKV ST + IP + I + K+ + F RRK L+ Sbjct: 172 SHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKHNI-KDFKEFNKLIRTVFSSRRKKLKN 230 Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNILT 277 ++ + +L + ++ + R EN+S+E+F +I+N LT Sbjct: 231 TIINFITNKAILRENFLKEYLDKRPENISVEEFIQISNTLT 271 >gi|145350183|ref|XP_001419496.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579728|gb|ABO97789.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 268 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 132/272 (48%), Gaps = 19/272 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 ++++GQ+FL+D +++ E++ G V+EIG G GNLT +L GAR V+ +EKD+ Sbjct: 1 ARRWLGQHFLVDASVVTDAVEAARLGAGERVLEIGPGTGNLTNEMLKRGAR-VLAVEKDR 59 Query: 81 QFFPILKD-ISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLPYNIGTRLL 134 L++ + ++ + E+++ D LK D FE+ + +++AN+PYNI T +L Sbjct: 60 NLAEKLREGLCVEYKDAFELVEGDFLKWDGLATAFERATPETPRAKVVANIPYNITTDVL 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 + +E + +FQ+EV +R+ Y +SV + +K + + Sbjct: 120 KVLL---PMGDTFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRPVLRD 176 Query: 194 VFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248 F P P V S +I F P P+ + Q F ++RK LR +LK + E Sbjct: 177 CFMPPPNVESCLIGFKPKEPHELLPLNGTDKQFFTFVQACFAQKRKMLRNNLKAVCDEAT 236 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILT 277 +R + L++E++ ++ N + Sbjct: 237 MDGAFALLDRGLKVRPQELTMEEYVKLFNFVR 268 >gi|257784886|ref|YP_003180103.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469] gi|257473393|gb|ACV51512.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469] Length = 314 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 129/301 (42%), Gaps = 33/301 (10%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + K L + + K +GQNFL+ +I++KI + + V+E+G G G LT L Sbjct: 14 NQRATKETLERFGLATKYRLGQNFLVQDHIIEKIVQLAEVRPTDVVVEVGPGLGTLTVAL 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISS------- 117 L A V +E D + +L + HP+ ++ DAL + +K Sbjct: 74 LD-NALAVCSLEADPELEQVLDVTCKEPHPDSFVLVMGDALAITSQKLAEAYGVLPAVAQ 132 Query: 118 --------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 P + ++NLPY + L+ + P E ++ Q EV +RI A+ ++ Sbjct: 133 SAIPVTPMPTKFVSNLPYQVAATLILKFFQE---LPSLERAVVMVQAEVADRIAAKPSTK 189 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL------- 222 YG + + T F++ P F P P+V S V+ P E L Sbjct: 190 AYGAYTAKLSLFAQVTGRFEVGPGNFMPPPRVNSAVVRLDRTEARNPLTSEFLSEEELLH 249 Query: 223 -KKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDFCRITNIL 276 ++ AF +RRKT+R S+ G ++ L QA GI RAE L+ +DF + L Sbjct: 250 AMRVIDAAFAQRRKTIRNSMSASGFDKDKLDQAFLATGIAPTARAEVLTSQDFICLAAAL 309 Query: 277 T 277 Sbjct: 310 E 310 >gi|14591574|ref|NP_143656.1| dimethyladenosine transferase [Pyrococcus horikoshii OT3] gi|3258259|dbj|BAA30942.1| 290aa long hypothetical dimethyladenosine transferase [Pyrococcus horikoshii OT3] Length = 290 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 36/284 (12%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I P+ +GQ+FL+ ++++K E++ + ++E+G G G LT L A+K Sbjct: 30 LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKR-AKK 88 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE DQ+ ILK S N ++IIQ DA++V++ KF ++++N+PY I + Sbjct: 89 VYTIEIDQKIIEILKKEYS--WNNVKIIQGDAVRVEWPKF------NKVVSNIPYKISSP 140 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + D +E +++Q E R+ A+ S +Y RLS++ ++ I Sbjct: 141 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 195 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S ++ P + I + + + F RRKT+ ++LK + +H Sbjct: 196 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 246 Query: 253 AGI-------------ETNLRAENLSIEDFCRITNILTDNQDIA 283 G+ +N R L E+ I L + I+ Sbjct: 247 LGVSKDEIRGIINNVPHSNKRVFQLYPEEVKDIEEYLKKHGIIS 290 >gi|268323689|emb|CBH37277.1| Probable dimethyladenosine transferase [uncultured archaeon] Length = 250 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 19/266 (7%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 K IL I + +GQ FL+D ++ ++ E + V+EIGAG G++T+ L A Sbjct: 4 KRILMDRGIRAVRSLGQYFLVDNDVAARMVEYASVGSEDLVLEIGAGLGSVTEELA-RKA 62 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 ++V +EKD++ IL++ ++E+I+ D +K++ +F +++A++PY++ Sbjct: 63 KRVYAVEKDKELCEILREQYVDKKGKIEVIEADIMKLELPEF------DKVVASIPYSLS 116 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + + + + + +E LL+QKE +++TA+ S YGRLSV+ ++ + Sbjct: 117 SPITYKLLLHN-----FELAVLLYQKEFAQKMTAEPRSHLYGRLSVIAQALADIEILEIV 171 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F PSP V + ++ F + + AFG RRK +R + + L Sbjct: 172 HRDAFCPSPPVKTAIVRFTEKKKRLVEDKREFIEFVSFAFGHRRKMMRHIFR---TSDAL 228 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 + R E LS E+F R+ +I Sbjct: 229 K----DLAKRPEELSPEEFARLFSIF 250 >gi|257063482|ref|YP_003143154.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM 20476] gi|256791135|gb|ACV21805.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM 20476] Length = 296 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 85/288 (29%), Positives = 137/288 (47%), Gaps = 22/288 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K +T+L + + KK +GQNFL+ I+ KI E S V+E+G G G LT L Sbjct: 9 KPSVTRTVLQRHGLATKKALGQNFLVSDAIIGKICELSEVCGQDDVLEVGPGIGTLTVAL 68 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRI 121 L A +V+ +E+D+ +L + N ++Q DAL + E F + +P + Sbjct: 69 LPR-ANRVLSVERDRDLPAVLAETCGAFDN-FTLLQKDALDLREEDFACVPGDPFAPNKF 126 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY + L+ ++ +S T++ Q EV +R++A+ + YG +V Sbjct: 127 VANLPYAVAATLVLDYFQK---IESIQSATVMVQSEVADRMSAKPATKEYGAYTVKLQLI 183 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239 K T F +SP+ FFP P VTS+VI + P + + AF +RRKT+ Sbjct: 184 AKPTGRFQVSPNNFFPPPHVTSSVIRLDRRDDLGVTPDEAAAASMMADAAFTQRRKTVAN 243 Query: 240 SLKRLGGE-----------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 S+K+ ++ AGI+ R E L +E+F + L Sbjct: 244 SMKQYFSRPQSPIDATDVPKMMQSAGIDARRRGETLGLEEFIELGRCL 291 >gi|325473126|gb|EGC76322.1| dimethyladenosine transferase [Treponema denticola F0402] Length = 293 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 14/282 (4%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + LK++L +K GQNFL+D + + G V E+G G G +T + Sbjct: 13 DSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYL 72 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 LL G + E D+ F +LK ++ +++ D K P Sbjct: 73 LLEKGVH-LTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYLREHGKPDVFFG 131 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYNI + L+ + + A ++++ QKE ERITA+ + +Y SVL + Sbjct: 132 NLPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCALFYE 188 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242 ++ I F+P P V S + F + KI + F RRK ++ +L Sbjct: 189 CKIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKNFKLFIKIVKALFSSRRKNIKNNLG 248 Query: 243 RLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276 N +L ++G+ NLRAE+L++ DF +++I+ Sbjct: 249 SWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290 >gi|33862894|ref|NP_894454.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9313] gi|62900570|sp|Q7V7W0|RSMA_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33634810|emb|CAE20796.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 280 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 11/268 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K Q++L+D +L +I +++ ++E+G G G LT+ LL A V +E Sbjct: 5 GHHARKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ LK + R + + D L V + + +++AN+PYNI LL Sbjct: 65 LDRDLVSGLKQRFADQA-RFSLQEGDVLSVPL-TLADGRAATKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P ++ L LL QKEV +RI A + LSV + T + + P F Sbjct: 123 LGRLDRPVDHPYQRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLARCTTVCPVPPRSF 182 Query: 196 FPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S VI P P + ++ + ++AF RRK LR +L ++ L+ Sbjct: 183 KPPPKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNA 242 Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276 GI R + LS + + L Sbjct: 243 LADDLGISLQQRPQELSPATWVELARGL 270 >gi|257469508|ref|ZP_05633600.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185] gi|317063752|ref|ZP_07928237.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185] gi|313689428|gb|EFS26263.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185] Length = 264 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 17/263 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL D +L+KI E S + TV+EIG G G LT +LL A KV+ +E Sbjct: 3 FKHKKKFGQNFLTDQKEVLRKIMEVSAVNENDTVLEIGPGEGALTALLLDT-AEKVVTVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ IL+ +P + ++ +D L+ D +++ +++AN+PY I + ++ Sbjct: 62 IDRDLEKILRKKFDGNP-KYTLVMNDVLETDLKEYVGAG--TKVVANIPYYITSPIINKL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + ++ QKEV ERI A+K L++ + +A +F I F P Sbjct: 119 IENRD---VIDEIYIMVQKEVAERICAKKG-KERSVLTLAVEYFGEAEYLFTIPKEAFTP 174 Query: 198 SPKVTSTVIHF---IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----L 249 PKV S + + K + AF +RK L + LG + Sbjct: 175 IPKVDSAFMSIKLYKDDKYKKLVAEDIFFKYVKAAFANKRKNLLNNFTSLGMSKDELRVV 234 Query: 250 LHQAGIETNLRAENLSIEDFCRI 272 L++ GI+ RAENL+IEDF + Sbjct: 235 LNEVGIKETERAENLTIEDFINL 257 >gi|303244670|ref|ZP_07331002.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1] gi|302484978|gb|EFL47910.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1] Length = 279 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 29/274 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D NI+KK ++ V+EIG G G LT+ L A+KV VIE D + Sbjct: 11 NKKLGQCFLKDKNIVKKAVNAADINKNDIVLEIGLGKGILTKELAK-NAKKVYVIELDMR 69 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +++ +++PN +EII +DALKV+ ++ + +I+ANLPY I + + F ++ D Sbjct: 70 LEPFAEEVIAEYPN-VEIIWNDALKVNLDEL----NFNKIVANLPYQISSPITFKFLKKD 124 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L++Q E +R+ A++ + YGRLSV + + +SP F P PKV Sbjct: 125 -----FDVAVLMYQYEFAKRMIAKEGTKEYGRLSVSVQYYANVQFVCKVSPSAFSPKPKV 179 Query: 202 TSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI--- 255 S ++ E + + + F + KT +++L E L++ I Sbjct: 180 DSAIVKITKKEPNELYYLEDKEFFENVVRALFQHKNKTAKKALINSCHEMGLNRDEIKNM 239 Query: 256 ------------ETNLRAENLSIEDFCRITNILT 277 + N R L+IE ++N+L Sbjct: 240 IDTLNNLNLSKFDLNERVFTLNIEKIVELSNMLY 273 >gi|83025311|gb|ABB95748.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 61 IGNGARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I + + L FQKEV ERI AQ + Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|66810281|ref|XP_638864.1| dimethyladenosine transferase [Dictyostelium discoideum AX4] gi|74854506|sp|Q54QK7|DIMT1_DICDI RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|60467487|gb|EAL65509.1| dimethyladenosine transferase [Dictyostelium discoideum AX4] Length = 314 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 82/297 (27%), Positives = 123/297 (41%), Gaps = 42/297 (14%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 H++ K GQ+ L + I+ I + S TV+EIG G GNLT LL +KV Sbjct: 22 ARHHEFQMNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLE-NCKKV 80 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I IE D + L+ + P L+II D LKVD F +AN+PY I + Sbjct: 81 IAIEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLPYF------DVCVANVPYQISS 134 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L F ++ P + + L+FQKE R+ A+ Y RLSV T +K T + + Sbjct: 135 PLTFKLLAHR---PIFRTAVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMKVG 191 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------- 242 + F P PKV S V+ P P P + + F ++ KTL + Sbjct: 192 KNNFLPPPKVESAVVRIEPFNPPPPINFVEWDGLVKLCFSRKNKTLSGIFRVSSVIETLN 251 Query: 243 --------------RLGGENLLHQAGIE-------TNLRAENLSIEDFCRITNILTD 278 G + + + I+ + R+ L I DF ++ N + Sbjct: 252 QNYKTYCALEGKMNTDGSDEQMKELIIKTLTDNDFLDSRSSKLDINDFLKLLNKFHE 308 >gi|224532232|ref|ZP_03672864.1| dimethyladenosine transferase [Borrelia valaisiana VS116] gi|224511697|gb|EEF82103.1| dimethyladenosine transferase [Borrelia valaisiana VS116] Length = 284 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 14/281 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ NI +KI ES + + EIG G G Sbjct: 11 MKINYNSITSIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 70 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 71 AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYTNENKNID--- 125 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 126 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 181 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI H F+P PKV ST + IP N I + K+ + F RRK L+ Sbjct: 182 SHFTVIKIIDIGEHNFYPVPKVRSTTLKLIPKENNI-KDFKEFNKLIRTVFSNRRKKLKN 240 Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNILT 277 ++ + ++ L + ++ + R EN+S+E+F +I+N LT Sbjct: 241 TIINFIANKDTLRENFLKEYLDKRPENISVEEFIQISNTLT 281 >gi|219684472|ref|ZP_03539416.1| dimethyladenosine transferase [Borrelia garinii PBr] gi|219672461|gb|EED29514.1| dimethyladenosine transferase [Borrelia garinii PBr] Length = 281 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 14/284 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K IL KI P+K GQN+L++ +I +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D K + NI Sbjct: 68 AMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFFKKYPNENKNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 A + DI F+P+PKV ST + IP N I + K+ + F RRK L+ Sbjct: 179 SHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSSRRKKLKN 237 Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNILTDNQ 280 ++ + + +L + ++ + R EN+S+E+F +I+N LT + Sbjct: 238 TIINFIKNKAILEENFLKEYLDKRPENISVEEFIQISNTLTAHH 281 >gi|225709718|gb|ACO10705.1| Probable dimethyladenosine transferase [Caligus rogercresseyi] Length = 313 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 17/264 (6%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + +GQ+ L + I+ I + SG TV+EIG G GNLT LL + ++VI Sbjct: 24 GRQGLQFNTTLGQHILKNPAIVDSIIDKSGLRPTDTVLEIGPGTGNLTAKLLQV-VKRVI 82 Query: 75 VIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 VIE D + ++ P+R LEI+ DA+K D FF++ +AN+PY I + Sbjct: 83 VIEVDPRMVSEIQKRFQHSPHRPKLEILVGDAIKTDLP-FFDVC-----VANVPYQISSP 136 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+F + PF+ + L+FQ+E R+ A + RLS+ T + + + Sbjct: 137 LVFKLL---IHRPFFRAAILMFQREFALRLIAPPGDKLFCRLSINTQLLSTVHHLLKVGR 193 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 + F P PKV S+V+ P P + +T+ F ++ KTL + + L + Sbjct: 194 NNFRPPPKVESSVVRIEHKNPPPPINFKEWDGLTRICFVRKNKTLGAAFSQTPVLMTLDK 253 Query: 253 -----AGIETNLRAENLSIEDFCR 271 ++ + E SI+D Sbjct: 254 NYRTHLSLKEEMVPEEFSIKDLIE 277 >gi|83025307|gb|ABB95746.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + P R+ I D LKV+ KF + Sbjct: 61 IGNGARQVVVIEKDARFLGPLRLLQEAAPGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I + + L FQKEV ERI A + Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAPPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|328954956|ref|YP_004372289.1| dimethyladenosine transferase [Coriobacterium glomerans PW2] gi|328455280|gb|AEB06474.1| dimethyladenosine transferase [Coriobacterium glomerans PW2] Length = 313 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 27/290 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + + +L + + K +GQ+FL+D +++++I + V+E+G G G LT L Sbjct: 8 SPTATRELLDEFGLTTKHRLGQHFLIDDHVVERIVRLAELDANARVVEVGPGIGTLTLAL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIA 123 L AR V+ IE D P+L + HP+ L I DAL+V F +P ++A Sbjct: 68 LPRVAR-VVAIEMDPALEPVLAMHVADHPD-LSYIIGDALRVGFRAIAAEAGGAPTMLVA 125 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPYN ++ +++ ES ++ QKEV +RI AQ + YG + + Sbjct: 126 NLPYNAAATIILDYLE---HMDSLESAVVMVQKEVADRIAAQPGTKSYGAYTAKLRLIGE 182 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPH----LNPIPC-----------CLESLKKITQE 228 T F++S F P P+V S+V+ PC + + Sbjct: 183 LTDRFEVSRLSFMPPPRVESSVVRIERAHRAGERLGPCLAGASAGTGAVAPAQVASVIDA 242 Query: 229 AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 AF +RRKT+R S+ G + L + I ++RAE L +DF R+T Sbjct: 243 AFAQRRKTIRNSMTARGFDREMLDEALGASRIAPSIRAEALDTDDFIRLT 292 >gi|51598843|ref|YP_073031.1| dimethyladenosine transferase [Borrelia garinii PBi] gi|62900508|sp|Q660T2|RSMA_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|51573414|gb|AAU07439.1| dimethyladenosine transferase [Borrelia garinii PBi] Length = 281 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 148/280 (52%), Gaps = 14/280 (5%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K IL KI P+K GQN+L++ +I +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 68 AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 A + DI + F+P+PKV ST + IP N I + K+ + F RRK L+ Sbjct: 179 SHFTAIKIIDIGENNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSGRRKKLKN 237 Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNIL 276 ++ + + +L + ++ R EN+S+E+F +I+N L Sbjct: 238 TIINFIKNKAILEENFLKEYLGKRPENISVEEFIQISNNL 277 >gi|289185434|gb|ADC91854.1| dimethyl adenosine transferase [Paenibacillus popilliae] Length = 224 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 9/219 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 K I+ + KK +GQNFL+D+NI+++I +++ +EIG G G LT+ L+ Sbjct: 11 PSRTKEIVRKHGFSFKKSLGQNFLVDMNIMRRIVDAAEPDSVTGALEIGPGIGALTEQLV 70 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122 + +V +E DQ+ PIL ++ +PN + ++ D LKVD + F + ++ Sbjct: 71 QQ-SGQVAAVEIDQRLIPILGEVLEPYPN-VRVVHGDVLKVDLGELFRDQFQAMDKVSVV 128 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY + T +L + +++ ++ QKEV ERI AQ S YG LSV + + Sbjct: 129 ANLPYYVTTPILMRLLEERLP---VKNIVVMIQKEVAERIAAQPGSKDYGSLSVAIQYFS 185 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES 221 + ++ + P VF P P V S VI P + Sbjct: 186 EPQLVCIVPPSVFIPQPNVESAVIKLRIREQPPVEARDE 224 >gi|145545245|ref|XP_001458307.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426126|emb|CAK90910.1| unnamed protein product [Paramecium tetraurelia] Length = 353 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 12/245 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K +S ++ K GQ+ L++ IL+ I + S V+EIG G GNLT++LL Sbjct: 1 MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQR- 59 Query: 70 ARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A++VI +E D + L SQ+ ++ ++IQ D L + FF++ +AN+PY Sbjct: 60 AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F ++ P W L+FQ+E R+ A+ + Y RLS ++ + Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + + F P PKV S+V+ P + + F ++ K L K Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPKNPIPNINYIEWDGLLRICFNRKNKQLSAIFKNKSVL 230 Query: 248 NLLHQ 252 L Sbjct: 231 KTLEH 235 >gi|253582223|ref|ZP_04859446.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725] gi|251835762|gb|EES64300.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725] Length = 264 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 17/263 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL D +L+KI E S + T++EIG G G LT +LL A+KV+ +E Sbjct: 3 FKHKKKFGQNFLTDQKEVLRKIMEVSDVNENDTILEIGPGEGALTALLLD-KAQKVVAVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ IL+ + +P + ++ +D L+ D +++ + I+++AN+PY I + ++ Sbjct: 62 IDRDLEKILRKKFNDNP-KYTLVMNDVLETDLKEYLTLG--IKVVANIPYYITSPIINKL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + ++ QKEV ERI A+K L++ + KA +F I F P Sbjct: 119 IENRE---IIDEIYIMVQKEVAERICARKG-KERSVLTLAVEYFGKAEYLFTIPKEAFTP 174 Query: 198 SPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NL 249 PKV S + + + + K + AF +RK L + LG + Sbjct: 175 IPKVDSAFMSIKLYKDDKYKKIIEEDIFFKYVKAAFANKRKNLLNNFTALGISKDELRKI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRI 272 L +AGI+ RAENL+IEDF + Sbjct: 235 LSEAGIKETERAENLTIEDFINL 257 >gi|119961382|ref|YP_947119.1| dimethyladenosine transferase [Arthrobacter aurescens TC1] gi|166987690|sp|A1R4F7|RSMA_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119948241|gb|ABM07152.1| dimethyladenosine transferase [Arthrobacter aurescens TC1] Length = 293 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + P K +GQNF++D N +++I ++ D TV+E+G + L Sbjct: 17 ATDIRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAAAIGDDETVLEVGP-GLGSLTLGL 75 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A+ V+ +E D L + ++ DA+KV P ++ Sbjct: 76 LDAAKAVVAVEIDPVLAEKLPETVRAWRPGAEENFHLVLSDAMKVTELPL----PPTALV 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + P + ++ Q EV +R+ A S YG SV W Sbjct: 132 ANLPYNVAVPVVLHLL---QHFPSLQHGLVMVQDEVADRLAATPGSKIYGVPSVKAAWYG 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241 I +VF+P+PK+ S ++ F H P E + + AF +RRKTLR +L Sbjct: 189 HMRKAGVIGMNVFWPAPKIHSGLVAFTRHDPPETHATREQVFAVIDAAFAQRRKTLRAAL 248 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E L AG++ R E L I + +I Sbjct: 249 AGWAGSASEAERCLVAAGLDPTARGEVLDINAYVKIAEA 287 >gi|94269962|ref|ZP_01291617.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] gi|93450994|gb|EAT01969.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] Length = 288 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 92/277 (33%), Positives = 131/277 (47%), Gaps = 16/277 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ILS +K+ P K GQNFL+ + ++I E + TV+E+G G G LT+ L A Sbjct: 7 QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 66 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLPYNI 129 KVI +E D + S + P +E+ D L+ D+ I+IIANLPY+I Sbjct: 67 -KVIGLELDAGIVNYHRQ-SGELPANVELRHQDLLRADYPAMAAEQGGKIKIIANLPYSI 124 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LLF + + + L+ QKEV +R+ A S YG L+VL G + Sbjct: 125 TNPLLFRLLVQRRALDW---VVLMIQKEVADRLVAAVGSKEYGVLTVLLGACATVERLLA 181 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL---KKITQEAFGKRRKTLRQSLKRLGG 246 + P FFP PKV S VI P +++ AF +RRKTL SL Sbjct: 182 VGPGNFFPRPKVDSVVIRLDFRNFPHVPDDAEFGRLRRVVDAAFNQRRKTLLNSLSAGLP 241 Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L A +++ LRAE L+ DF R++ L Sbjct: 242 ELDRETIAAALAAAELDSGLRAERLTTADFRRLSAKL 278 >gi|225551958|ref|ZP_03772898.1| dimethyladenosine transferase [Borrelia sp. SV1] gi|225370956|gb|EEH00386.1| dimethyladenosine transferase [Borrelia sp. SV1] Length = 281 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 14/280 (5%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ +I +KI ES + + EIG G G Sbjct: 8 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGIG 67 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T++LL + E D ++ IL + + N ++I+ D LK + NI Sbjct: 68 AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + QKE+ +RITA+ NS +Y +VL Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTIQKELADRITAKINSKNYSSFTVLVQ 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 A + DI F+P+PKV ST + +P N I + K+ + F RRK L+ Sbjct: 179 SHFNAIKILDIGESNFYPAPKVKSTTLKLVPKKNNI-KNFKEFNKLVRTVFSSRRKKLKN 237 Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNIL 276 ++ + + L + ++ + R EN+S+E+F +I+N L Sbjct: 238 TIINFIANKATLRENFLKEYLDKRPENISVEEFIQISNTL 277 >gi|269957508|ref|YP_003327297.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM 15894] gi|269306189|gb|ACZ31739.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM 15894] Length = 303 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 123/276 (44%), Gaps = 15/276 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF+ D ++KI ++G G V+E+G G G+LT LL Sbjct: 11 PAEIRELAGRLGVRPTKTLGQNFVHDAGTVRKIVRAAGLRPGQRVVEVGPGLGSLTLGLL 70 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 GA V+ +E D + +H E++ DAL V P ++AN Sbjct: 71 EAGA-SVVAVEIDPVLAGEIPATVQRHLPGADFEVVLSDALDVRT---LPGEPPTALVAN 126 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + ES+ ++ Q EV +RI A S YG SV W +A Sbjct: 127 LPYNVAVPVLLTMLER---FDSLESVLVMVQAEVADRIAAAPGSKIYGIPSVKAAWYARA 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKR 243 +S +VF+P P V S ++ P E + + AF +RRKTLR +L Sbjct: 184 WRSLTVSRNVFWPVPNVDSALVALERRDPPTTAATREQVFTVVDAAFAQRRKTLRAALSG 243 Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 L G L A ++ R E L + F RI Sbjct: 244 LFGSGPAAEAALRAADVDPGARGETLDVTAFARIAE 279 >gi|147864926|emb|CAN81538.1| hypothetical protein VITISV_011853 [Vitis vinifera] Length = 336 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 28/242 (11%) Query: 15 SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 HY + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + Sbjct: 19 KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 VI +E D + L+ P NRL++IQ D L+ D F +AN+PY I Sbjct: 78 VIAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLPYF------DICVANIPYQIS 131 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F ++ P + ++FQ+E R+ AQ Y RLS + Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLS--------------V 174 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 + F P PKV S+V+ P P + + + F ++ KTL ++ +LL Sbjct: 175 GKNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 234 Query: 251 HQ 252 + Sbjct: 235 EK 236 >gi|312144343|ref|YP_003995789.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus'] gi|311904994|gb|ADQ15435.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus'] Length = 295 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 150/297 (50%), Gaps = 22/297 (7%) Query: 3 MNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M NK K IL Y + KK +GQNFL+D NI+ I ++ +IEIG G G Sbjct: 1 MLNKIATPSETKKILKEYDLRLKKGLGQNFLIDYNIIDIIINAAEIDGDELLIEIGPGIG 60 Query: 60 NLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NIS 116 +LTQ LL L K+I IEKD + +LK+I Q N+L+++ +DAL ++++K N Sbjct: 61 SLTQALLEELKDGKLIAIEKDAEMVKVLKEIFPQ-QNKLKLLNEDALAIEWKKIAKENKG 119 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I++IANLPY + T ++ + + ++ E + + QKEVGER+++ + +G LSV Sbjct: 120 MGIKVIANLPYYVTTPIIMSILESEI---ELEKMIFMVQKEVGERMSSGPGTKKFGSLSV 176 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGK 232 + K ++ + VF P P V S ++ P+ E +I + F + Sbjct: 177 AVQYHMKPEIVHQVPSSVFLPQPDVDSVIVSLTPYSENPHQKKVIDQEFFFQIVKSIFQQ 236 Query: 233 RRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 RRKTLR SL + NL L GI R E L I + ITN L ++ Sbjct: 237 RRKTLRNSLSKSAVINLDRDLVTKALELEGIGLKKRGEKLEISEMISITNRLYKMRN 293 >gi|124023319|ref|YP_001017626.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9303] gi|166221689|sp|A2CA51|RSMA_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123963605|gb|ABM78361.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 280 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 11/268 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K Q++L+D +L +I +++ ++E+G G G LT+ LL A V +E Sbjct: 5 GHHARKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ + R + + D L V + + +++AN+PYNI LL Sbjct: 65 LDRDLVSGLRQRFADQA-RFSLQEGDVLSVPL-TLADGRAANKVVANIPYNITGPLLERL 122 Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P ++ L LL QKEV +RI A + LSV T + + P F Sbjct: 123 LGRLDRPVDHPYQRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLAHCTTVCPVPPRSF 182 Query: 196 FPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S VI P P + ++ + ++AF RRK LR +L ++ L+ Sbjct: 183 KPPPKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNA 242 Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276 GI R + LS + + L Sbjct: 243 LADDLGISLQQRPQELSPATWVELARGL 270 >gi|124087844|ref|XP_001346899.1| Ribosomal RNA adenine dimethylase [Paramecium tetraurelia strain d4-2] gi|145474821|ref|XP_001423433.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057288|emb|CAH03272.1| Ribosomal RNA adenine dimethylase, putative [Paramecium tetraurelia] gi|124390493|emb|CAK56035.1| unnamed protein product [Paramecium tetraurelia] Length = 353 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 12/245 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K +S ++ K GQ+ L++ IL+ I + S V+EIG G GNLT++LL Sbjct: 1 MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQR- 59 Query: 70 ARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A++VI +E D + L SQ+ ++ ++IQ D L + FF++ +AN+PY Sbjct: 60 AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F ++ P W L+FQ+E R+ A+ + Y RLS ++ + Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + + F P PKV S+V+ P + + F ++ K L K Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPKNPIPNINYIEWDGLLRICFNRKNKQLSAIFKNKSVL 230 Query: 248 NLLHQ 252 L Sbjct: 231 KTLEH 235 >gi|239616459|ref|YP_002939781.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1] gi|239505290|gb|ACR78777.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1] Length = 272 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 95/270 (35%), Positives = 140/270 (51%), Gaps = 12/270 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + IL Y I K +GQNF+ D IL +I + SG D TVIEIG G G L + L Sbjct: 3 ITDILRKYGIHLKDSLGQNFIKDERILSRIVKDSGITDEATVIEIGIGLGTL-TLKLAKK 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 A+KVI E D++F I K++ S ++II +D LK D + + S P+ +AN+PY I Sbjct: 62 AKKVIGFEIDKRFEQIHKELLS--DKNIQIIYEDFLKADLKDY--DSRPLFYVANIPYYI 117 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + +L + P +E+ L+ QKE ER+ A+ +S YG L+V G T +F+ Sbjct: 118 TSPILEKILFE---GPAFEAAILMVQKEYAERLLAKPSSKSYGALTVTIGAFTMVRRLFN 174 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL--G 245 +S F P+P V S+V+ I + E + + AF RRK L+ +LK + Sbjct: 175 VSRKAFIPAPAVDSSVVKLIMREQTLVPLNEKRRFRNFVKLAFSHRRKKLKNNLKPIIDN 234 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNI 275 E L G N+RAE L+IE F ++ Sbjct: 235 PEEFLRSLGFSVNVRAEELTIESFVKLYEA 264 >gi|269216111|ref|ZP_06159965.1| dimethyladenosine transferase [Slackia exigua ATCC 700122] gi|269130370|gb|EEZ61448.1| dimethyladenosine transferase [Slackia exigua ATCC 700122] Length = 292 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 131/284 (46%), Gaps = 18/284 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + + L+ + + KK +GQNFL+ I+ KI E + G V+E+G G G LT L Sbjct: 10 PSATRAALARHGLAAKKALGQNFLIHDAIVGKICELAQVDAGDDVLEVGPGIGTLTVALC 69 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 AR V IE+D+ P+L++ N + DAL+V + + P +++ANLP Sbjct: 70 AR-ARAVHAIERDRDLAPVLEESCWNFDN-FTLHMGDALQVGSDDLGGFA-PTKLVANLP 126 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y + L+ ++ P S+T++ Q EV +R+ A + Y SV R +AT Sbjct: 127 YAVAATLVLDFFDR---FPSMRSMTVMVQSEVADRMAASLGTKDYAAYSVKLALRAQATG 183 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 F+++P F P+P V+S VI + P + AF RRKT+ S+K Sbjct: 184 RFEVAPSNFMPAPHVSSAVIRLDRVQDHAPDDVALASVAADAAFAARRKTIANSMKAYFS 243 Query: 247 E------------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + L AGI+ R E LS+++F + Sbjct: 244 RPGSRHLEAADIVHALETAGIDARRRGETLSLDEFIALGRACAS 287 >gi|309792566|ref|ZP_07687028.1| dimethyladenosine transferase [Oscillochloris trichoides DG6] gi|308225380|gb|EFO79146.1| dimethyladenosine transferase [Oscillochloris trichoides DG6] Length = 285 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 25/291 (8%) Query: 3 MNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M N ++ L + P + MGQNFL+D L I +++ V+E+G G G Sbjct: 1 MQNPYLIPQRVRAALRTLDLRPTRGMGQNFLIDQLALDTIVQAAELTPDDLVVEVGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP 118 LT L+ + + + +E D++ L + + P L IIQ D L+ +++ P Sbjct: 61 VLTWELVRVARQV-VAVELDRRLAARLHEEFATAP--LRIIQADVLRTPPAAILDDLAPP 117 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +++ANLPY I +L +++ P + +L Q EV ERI AQ L+ Sbjct: 118 YKLVANLPYAITAPVLRHFLEGQPPPDV---MVVLVQWEVAERICAQPGDL--SVLAHAV 172 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKT 236 T+ ++ + F P+P V S ++ + +L +I + F + RK Sbjct: 173 QIYTQPEIIARVPASSFHPAPAVDSAILRMRRRPQLAVAVDDVAALFRIIKAGFLQPRKQ 232 Query: 237 LRQ-----------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L SL R LH A I+ RAE L++ ++ I L Sbjct: 233 LGNALPGGLAAIGSSLPRDEVVAALHSANIDPKRRAETLTLHEWATIYQAL 283 >gi|121711417|ref|XP_001273324.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1] gi|119401475|gb|EAW11898.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1] Length = 393 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 9/239 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I I + + TV+E+G GPG LT +L A+KV+ +E Sbjct: 34 FKFNTDIGQHILKNPTIADAIVDKANIQPSQTVLEVGPGPGILTTRIL-QKAKKVVAVEL 92 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +L+I+ D +K D K I+N PY I + L+F Sbjct: 93 DPRMAAELTKTVQATPAEKKLQIVLGDFVKTDLSKL---PPFQICISNTPYQISSPLIFK 149 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P ++ L+ Q+E R+ A+ Y RLSV + ++ + + + + F Sbjct: 150 LLSMPNPP---KTCVLMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFR 206 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S+V+ P + + + + F ++ KTLR L+ + I Sbjct: 207 PPPQVESSVVRVEPKADRPDISWDEWDGMLRICFVRKNKTLRAGFMGTKVRALIERNWI 265 >gi|326436805|gb|EGD82375.1| dimethyladenosine transferase 1 [Salpingoeca sp. ATCC 50818] Length = 321 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 87/312 (27%), Positives = 136/312 (43%), Gaps = 35/312 (11%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S+ +L Y + K + QNFLLD +I K +G L VIE+G GPG+LT+ + Sbjct: 5 PVPSVAQLLRLYGVRALKDLSQNFLLDPSITDKFVRHAGKLKDKVVIEVGGGPGSLTRSI 64 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------------- 112 L RK+ VIEKD + P+L ++ EII DAL +D+E+ Sbjct: 65 LKAQPRKLYVIEKDTRMLPMLDLVAEASGGVAEIIPGDALHIDYEQLITQANVATQPTAA 124 Query: 113 --------FNISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVG 159 + + II NLP+ I T L+ +++ + +LTL FQ+EVG Sbjct: 125 EGADSSAAAPAETDLHIIGNLPFGIATPLILSYLRQLSRRDSAFARSRPTLTLCFQREVG 184 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--- 216 ERI A + R+SV++ F I F P+PKV + V+ F P Sbjct: 185 ERICAPPRTKPRSRISVISQLYADVRPAFVIPSTAFVPAPKVEAMVVSFRPREQLPEGLE 244 Query: 217 -CCLESLKKITQEAFGKRRKTLRQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFC 270 + ++++ + +G R K LR + +++L AG RA LS + Sbjct: 245 QLTFDQMERVLRIGYGSRLKRLRHVFSKHVGGLQAADDMLASAGFPAETRAFFLSTRQWI 304 Query: 271 RITNILTDNQDI 282 + +Q Sbjct: 305 DLATAFYQHQSA 316 >gi|328855713|gb|EGG04838.1| hypothetical protein MELLADRAFT_49047 [Melampsora larici-populina 98AG31] Length = 333 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 14/231 (6%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 +GQ+ L + + + I + + V+E+G G GNLT +L +KV+V+E D + Sbjct: 50 KLGQHILKNPLVAQSIVDKANLKTTDQVLEVGPGTGNLTVKILE-KCKKVLVVEMDPRMA 108 Query: 84 PILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L P +L+I+ D LK D F I+N PY I + L+F ++ Sbjct: 109 SELSKRFQGKPQEMKKLDILVGDFLKTDLPYF------DVCISNTPYQISSPLVFKLLAH 162 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + L+FQ+E R+ A+ S + RLSV +K + + F P P Sbjct: 163 R---PIFRVAVLMFQREFALRLCARPGSSLWCRLSVNVQLYSKVNHLMKVGKANFRPPPL 219 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGGENLL 250 V S+VI P P E +T+ F +R KT+R S +++L Sbjct: 220 VESSVIKLEPINPPPAIKFEEFDGLTRICFNRRNKTIRASFFASKAVKDML 270 >gi|27151557|sp|O59487|RSMA_PYRHO RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase Length = 268 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 36/284 (12%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I P+ +GQ+FL+ ++++K E++ + ++E+G G G LT L A+K Sbjct: 8 LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKR-AKK 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE DQ+ ILK S N ++IIQ DA++V++ KF ++++N+PY I + Sbjct: 67 VYTIEIDQKIIEILKKEYS--WNNVKIIQGDAVRVEWPKF------NKVVSNIPYKISSP 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + D +E +++Q E R+ A+ S +Y RLS++ ++ I Sbjct: 119 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S ++ P + I + + + F RRKT+ ++LK + +H Sbjct: 174 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 224 Query: 253 AGI-------------ETNLRAENLSIEDFCRITNILTDNQDIA 283 G+ +N R L E+ I L + I+ Sbjct: 225 LGVSKDEIRGIINNVPHSNKRVFQLYPEEVKDIEEYLKKHGIIS 268 >gi|251773184|gb|EES53737.1| dimethyladenosine transferase [Leptospirillum ferrodiazotrophum] Length = 284 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 134/273 (49%), Gaps = 20/273 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 P +Y+GQ+FL D I ++I +S L+ +EIG G LT+ L R +I++E Sbjct: 13 SPARYLGQHFLTDDRIAQRIVDSLPTELLESTPTLEIGPGRMILTRHLARRSPR-LILVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD++ P L++ + ++EI + DAL+ E SP +I+NLPYNI LL Sbjct: 72 KDERLIPHLEESLREFGEKIEIRRGDALE---ENLVLEGSPYLVISNLPYNISVPLLLKI 128 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I P L+FQKEV ERITA S YG LSV + +FDI P F P Sbjct: 129 IGGTPPP---LMAVLMFQKEVAERITAPAGSKDYGSLSVAARLLSTPRHLFDIRPGSFTP 185 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S+V+ F+P L + + AF RRKTL+ +LK+ ++ + Sbjct: 186 PPKVQSSVLSFVPAETRADPSLPGAFHLARAAFAYRRKTLKNALKQGLSPEIVEA--VSP 243 Query: 258 ---------NLRAENLSIEDFCRITNILTDNQD 281 + R ENLS ED+ + L ++ Sbjct: 244 LVEALPQGSDCRPENLSPEDWLFLARTLREHSP 276 >gi|237742501|ref|ZP_04572982.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13] gi|229430149|gb|EEO40361.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13] Length = 264 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + N IL KI E S D ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKNEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N ++ D L+VD K+ N +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSPKEN-YTLVMGDVLEVDLRKYINQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + ++ +F I F P Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGESEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264 >gi|169765912|ref|XP_001817427.1| dimethyladenosine transferase [Aspergillus oryzae RIB40] gi|238482523|ref|XP_002372500.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357] gi|83765282|dbj|BAE55425.1| unnamed protein product [Aspergillus oryzae] gi|220700550|gb|EED56888.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357] Length = 392 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 10/253 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I I + + G TV+E+G GPG LT +L A+KV+ +E Sbjct: 33 FKFNTDLGQHILKNGAIADAIVDKANIQQGQTVLEVGPGPGVLTNRILA-KAKKVVAVEV 91 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +L+I+ D +K D + I+N PY I + L+F Sbjct: 92 DPRMAAELTKNVQGTPAEKKLQIVLGDFVKTDLSQL---PPFQICISNTPYQISSPLIFK 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + L+ Q+E R+ A+ Y RLSV + ++ + + + F Sbjct: 149 LLSMPNPP---KMCVLMVQREFALRLVARPGDSLYSRLSVNVQFFSRVQHIMKVGRNNFR 205 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S+V+ P + + + + F ++ KTLR ++ + I Sbjct: 206 PPPQVESSVVRVEPKSDRPAISWDEWDGMLRICFVRKNKTLRAGFMGNKTRAMIERNWIT 265 Query: 257 -TNLRAENLSIED 268 + E ++ D Sbjct: 266 FATMYPEKVTQAD 278 >gi|328774301|gb|EGF84338.1| hypothetical protein BATDEDRAFT_22291 [Batrachochytrium dendrobatidis JAM81] Length = 306 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 12/232 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K +GQ+ L + ++ I + + V+E+G G GN+T +L A+K IV+E D + Sbjct: 23 KSLGQHILKNPLVVNGIVDKACIKATDVVLEVGPGTGNVTVKILE-KAKKTIVVEMDPRL 81 Query: 83 FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L +LE+I D LKVD F I+N PY I + L F + Sbjct: 82 AAELTKRVRGTAEQRKLEVIVGDFLKVDLPYF------DICISNTPYQISSSLTFKLLQH 135 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P W L+FQ+E R+ A+ Y RLS K + + + F P PK Sbjct: 136 R---PLWRCSILMFQREFALRLVAKPGDALYCRLSANVQLLAKVDHVMKVGKNNFRPPPK 192 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 V S+V+ PH P P + + + FG++ +T+ + K +L Sbjct: 193 VESSVVRIEPHNPPPPVNFDEWDGLLRILFGRKNRTVAANFKTSTVLEMLEH 244 >gi|83025301|gb|ABB95743.1| mitochondrial transcription factor B1 [Tigriopus californicus] gi|83025303|gb|ABB95744.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 61 IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I + + L FQKEV ERI AQ + Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|67464821|ref|XP_648602.1| dimethyladenosine transferase [Entamoeba histolytica HM-1:IMSS] gi|56464806|gb|EAL43214.1| dimethyladenosine transferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 295 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 40/284 (14%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + I ++I +++ V+EIG G GNLT +L +K+I IE Sbjct: 10 FQFHKSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPFC-KKLIAIEI 68 Query: 79 DQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + LK S + +LEIIQ D LKV+ F ++N PY+I + L+F Sbjct: 69 DPRMAAELKKRVSVTDYVKKLEIIQGDFLKVELPYF------DVCVSNTPYSISSPLVFK 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + S L+FQ+E R+ A+ P Y RLSV T + + + F Sbjct: 123 LLNHR---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFK 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252 P PKV S+V+ IP P L + F ++ KTL + ++ + Sbjct: 180 PPPKVESSVVRMIPVKPAPPLNLVEFDGFLRICFLRKHKTLSSLFRISSVLEVMEKNLRI 239 Query: 253 ------AGIETNL------------------RAENLSIEDFCRI 272 I+ NL RA L+++DF + Sbjct: 240 IAKIRNIPIDENLDVKADVLQILEESGRAKSRAAQLTLDDFLEL 283 >gi|83583584|gb|ABC24676.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 365 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 11 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 70 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 71 IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 130 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I + + L FQKEV ERI AQ + Sbjct: 131 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 190 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 191 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 250 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 251 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 310 >gi|332158063|ref|YP_004423342.1| dimethyladenosine transferase [Pyrococcus sp. NA2] gi|331033526|gb|AEC51338.1| dimethyladenosine transferase [Pyrococcus sp. NA2] Length = 271 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 39/287 (13%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +LS Y I PK +GQ+F++ ++++K E++ + V+EIG G G LT L A+K Sbjct: 8 LLSKYGIRPKDTIGQHFIIVEDVIRKAVETADVNEKDVVLEIGPGLGFLTNELAKR-AKK 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ ILK+ N +EII+ DA+K+++ +F ++++N+PY I + Sbjct: 67 VYAIELDRKMIQILKNEYK--WNNVEIIEGDAIKLEWPEF------NKVVSNIPYQISSP 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + D +E +++Q E R+TA+ S +Y RLS++T ++ I Sbjct: 119 FTFKLLKKD-----FELAVVMYQLEFALRMTARPGSKNYSRLSLMTQALADVEIVMKIGR 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S ++ P + + + + + F RRKT+ ++LK + +H Sbjct: 174 GAFYPRPKVDSALVVIRPRKDKVELN----ENLVKALFQHRRKTVSRALK-----DSIHM 224 Query: 253 AGIE----------------TNLRAENLSIEDFCRITNILTDNQDIA 283 GI ++ R L D I L ++ I+ Sbjct: 225 LGITKDKLKEIKHIIESVPYSSKRVFQLVPNDVKEIEEYLRNHGIIS 271 >gi|152965013|ref|YP_001360797.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216] gi|259494252|sp|A6W6U4|RSMA_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|151359530|gb|ABS02533.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216] Length = 300 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 125/277 (45%), Gaps = 16/277 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + ++ + I P K +GQNF++D N +++I + V+E+G G G+LT L Sbjct: 14 SARDVRDLADRLSIRPTKTLGQNFVVDANTVRRIVRVADLTPEDVVVEVGPGLGSLTLAL 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRII 122 L +V+ +E D L + E++ DA+++ P ++ Sbjct: 74 LE-AVDRVVAVEIDPVLAAELPATVAARGRPGTSFEVVLADAVQL---AELPGPPPTALV 129 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L ++ P ++ Q EV +R+ A S YG SV T W Sbjct: 130 ANLPYNVAVPVLLTMLAR---FPSLRQGLVMVQSEVADRLVAPPGSRTYGVPSVKTAWYA 186 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 A + P VF+P P+V S ++ F P E + + AF +RRKTLR +L Sbjct: 187 SAKRAGSVPPPVFWPVPRVDSGLVSFTRRPAPETTAGREEVFALVDAAFAQRRKTLRAAL 246 Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 G L AG++ ++R E L + DF RI Sbjct: 247 AGWAGSPAAAEEALRAAGVDPSVRGEQLGVADFARIA 283 >gi|171911937|ref|ZP_02927407.1| dimethyladenosine transferase [Verrucomicrobium spinosum DSM 4136] Length = 441 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 75/267 (28%), Positives = 120/267 (44%), Gaps = 10/267 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQNFL D I K IA+ V+EIG G G +T L+ A+ ++ +EK Sbjct: 12 FAPKKSLGQNFLHDAGIAKWIADEIKPDGAPLVVEIGPGQGAMTTHLVGRAAKTLL-LEK 70 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D LK + +E+ DA + D F +++I NLPY++G +L + + Sbjct: 71 DNTLAADLKVKFEGRED-VEVWHGDATRFDLRPLFKFGG-VKVIGNLPYSMGGEILRHVL 128 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 T P + QKEV +R+ A + YG LS++ + + I P VF P Sbjct: 129 ---TPPTPVTEAVFMLQKEVCQRLAADQEDDAYGGLSLVVQHDWEVEIRRIIPPEVFKPR 185 Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254 PKV S ++ P ++ + F +RRK L+ L G ++L+ Sbjct: 186 PKVDSAIVRLTPRPPGDLPVHDRAVFDRLVRMGFSQRRKQLKNLLPECPGGWDSLMGSLS 245 Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281 +RAE L++ D+ +T + Sbjct: 246 KPLTVRAEELTLWDWVALTRHYEGRHE 272 >gi|94264395|ref|ZP_01288185.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] gi|93455152|gb|EAT05370.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1] Length = 304 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 129/277 (46%), Gaps = 16/277 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + ILS +K+ P K GQNFL+ + ++I E + TV+E+G G G LT+ L A Sbjct: 23 QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 82 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLPYNI 129 KVI +E D + + P +E+ D L+ D+ I+IIANLPY+I Sbjct: 83 -KVIGLELDAGIVNYHRQ-CGELPANVELRHQDLLQADYPAMAAEQGGKIKIIANLPYSI 140 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LLF + + + L+ QKEV +R+ A S YG L+ L G + Sbjct: 141 TNPLLFRLLVQRQALDW---VVLMIQKEVADRLVAAVGSKEYGVLTALLGACATVERLLA 197 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL---KKITQEAFGKRRKTLRQSLKRLGG 246 + P FFP PKV S VI P +++ AF +RRKTL SL Sbjct: 198 VGPGNFFPRPKVDSVVIRLDFRNFPHVPDDAEFGRLRRVVDAAFNQRRKTLLNSLSAGLP 257 Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L A +++ LRAE L+ DF R++ L Sbjct: 258 ELDRETIAAALAAAELDSGLRAERLTTADFRRLSAKL 294 >gi|149922616|ref|ZP_01911044.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1] gi|149816502|gb|EDM75999.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1] Length = 301 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 17/287 (5%) Query: 1 MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 MT++ ++ S K +L+ + + P+K GQNFL + +IA ++G+ G TV+EIGAG G Sbjct: 1 MTIDLRAIPSPKQLLARHGLAPRKSWGQNFLHAFEVHLEIAAAAGAGPGSTVVEIGAGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFN 114 LT LL GA +V IE+D+ +L+ P + + DA+K D+ Sbjct: 61 TLTAHLLAAGA-EVDAIERDRDLCAVLRTELGALPG-FRLHEADAVKFDYGAHARALLEA 118 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 I+ NLPY + LLF + D W + QKEV +R+ + + YG Sbjct: 119 GKPRPAIVGNLPYQLTGALLFALLEYDAVTGPWIVMV---QKEVADRLCSPPGNKRYGGA 175 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232 + G + F P P+V S VI P P+ ++ + + F + Sbjct: 176 TAALGRVRAIRKVCSAPAGCFLPPPRVDSAVIRLDPRPEPLGEVGDPKAYLHLVRTCFQR 235 Query: 233 RRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNI 275 RRKTL +L +G + + AG++ +R E L +F + Sbjct: 236 RRKTLANALLGVGDKASAQRWIAAAGLDPKIRPERLGPAEFAALQRA 282 >gi|67525711|ref|XP_660917.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4] gi|40744101|gb|EAA63281.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4] gi|259485718|tpe|CBF82976.1| TPA: dimethyladenosine transferase (AFU_orthologue; AFUA_7G04860) [Aspergillus nidulans FGSC A4] Length = 403 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 9/239 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I I + + TV+E+G GPG LT +L A+KV+ +E Sbjct: 37 FKFNTDLGQHILKNGAIADNIVDKANVQPSQTVLEVGPGPGILTTRILE-KAKKVVAVEF 95 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +L+I+ D +K D K I+N PY I + L+F Sbjct: 96 DPRMAAELTKRVQATPMEKKLQIVLGDFIKTDLSKL---PPFQVCISNTPYQISSPLIFK 152 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + L+ Q+E R+ A+ Y RLSV + +K + + + + F Sbjct: 153 LLSMPNPP---KMCVLMVQREFALRLLARPGDALYSRLSVNVQFFSKVSHIMKVGRNNFR 209 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S+V+ P L + + + F ++ KTLR ++ + I Sbjct: 210 PPPQVESSVVRIEPKLGKPEISWDEWDGMLRICFVRKNKTLRAGFMATKIRQMIERNWI 268 >gi|47226710|emb|CAG07869.1| unnamed protein product [Tetraodon nigroviridis] Length = 311 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 17/246 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + I+ +GQ+ L + I+ + E + V+E+G G GN+T LL A+KV Sbjct: 16 VKNQGIMFNTGIGQHILKNPLIVNSVIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D + L+ P N+L+I+ D LK D FF++ +ANLPY + T Sbjct: 75 VACELDCRLVAELQKRVQCTPMQNKLQILVGDVLKTDLP-FFDVC-----VANLPYQVDT 128 Query: 132 -----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 R++F + PF+ L+FQ+E R+ A Y RLS+ T + Sbjct: 129 FLFRRRIVFKLL---LHRPFFRCAVLMFQREFPMRLVAPPGDKLYCRLSINTQLLARVDH 185 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + + + F P PKV S+V+ P P P + + + AF ++ KTL + K Sbjct: 186 LMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAV 245 Query: 247 ENLLHQ 252 E LL + Sbjct: 246 EQLLEK 251 >gi|91772907|ref|YP_565599.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242] gi|118600877|sp|Q12XH7|RSMA_METBU RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|91711922|gb|ABE51849.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242] Length = 270 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 90/289 (31%), Positives = 139/289 (48%), Gaps = 35/289 (12%) Query: 10 LKTILSHYKIIPKKYMG----QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ IL Y I G Q+FL+D L I + + + V+EIG G GNLT+ L Sbjct: 2 VRKILQKYGIR-----GGCHDQHFLIDERSLDSIVDQAELSEKDVVLEIGGGIGNLTERL 56 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L A KV VIE D +LKD S + +LEII D LK+D KF +++ANL Sbjct: 57 LE-KAGKVYVIELDPALVHVLKDRFSDN-EKLEIIPGDVLKLDLPKF------NKVVANL 108 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+I + + F + +E L++Q E +R+ A+ N+ +Y RLSV T + A Sbjct: 109 PYSISSPITFKLFKHE-----FELGILMYQYEFAQRMVAKANTENYSRLSVNTHYFADAD 163 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 ++ I P F P P+V S V+ +P + + + F +RRK LR ++ + Sbjct: 164 IIMKIPPSAFSPPPEVWSAVVKVVPRPSSFHTEDPQFFLDLVTAVFLQRRKKLRNAI--V 221 Query: 245 GGENLLHQAGIE----------TNLRAENLSIEDFCRITNILTDNQDIA 283 G +LL+ I+ + RAENL + I N + + + Sbjct: 222 KGNHLLNVPNIKQIVAELPEEFMSKRAENLEPHELAEIANFIFKMRSTS 270 >gi|221106688|ref|XP_002161204.1| PREDICTED: similar to transcription factor B1, mitochondrial [Hydra magnipapillata] Length = 328 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 23/286 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + ++ Y + KK + QNF+LDLN+ KIA + VIE+G+GPG+L++ L Sbjct: 12 PMPRISDLMRLYGLRAKKQLSQNFILDLNVTDKIARKADVF-DCNVIEVGSGPGSLSRSL 70 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----------EKFFNI 115 L G R + +E D++F P L+ + + I D LK D E + Sbjct: 71 LNAGLRHLYAVEIDKRFLPSLELLQDASDGHMSIYHADILKFDMVKPLKNVISAEWESDD 130 Query: 116 SSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR++ NLP+++ L W+ A + +TL+FQKEVG+ + A+ + Sbjct: 131 LPNIRLVGNLPFSVSIPLFLQWLEALSTRSGVFSFGRIPMTLVFQKEVGQNMVAEALNYD 190 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RL+++ + +IS VF P PKV + ++HFIP P I ++++ + Sbjct: 191 RSRLAIMAQNYCHVSRAMEISSSVFVPEPKVDAWLMHFIPLKKPAIDAPFNVVEQVVKAI 250 Query: 230 FGKRRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDF 269 F KRRK ++ L+RL EN LL + ++TNLR L + DF Sbjct: 251 FSKRRKIIKTPLRRLFPENERLADELLDRIKLDTNLRPHQLELHDF 296 >gi|119482754|ref|XP_001261405.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181] gi|119409560|gb|EAW19508.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181] Length = 393 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 9/239 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I I + + TV+E+G G G LT +L A+KVI +E Sbjct: 33 FKFNTDIGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVEL 91 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +L++I D +K D K I+N PY I + L+F Sbjct: 92 DPRMAAEVTKTVQGTPAEKKLQVILGDFVKTDLSKL---PPFQICISNTPYQISSPLIFK 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P ++ L+ Q+E R+ A+ Y RLSV + ++ + + + + F Sbjct: 149 LLSMPNPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHVMKVGKNNFR 205 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S+V+ P + + + + F ++ KTLR L+ + I Sbjct: 206 PPPQVESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLRAGFMATKVRALIERNWI 264 >gi|294872243|ref|XP_002766218.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] gi|239866886|gb|EEQ98935.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] Length = 354 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI E+S TV+EIG G GNLT LL L A+KV+ +E D + Sbjct: 51 KKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPRM 109 Query: 83 FPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + L++I+ DALK F F +ANLPY I + F ++ Sbjct: 110 AAEVKKRAQTAGRMNLKVIEGDALKTQFPVF------DVCVANLPYQISSPFTFKLLAHR 163 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + ++FQKE GER+ A+ +YGRL++ +K T + ++S F P P+V Sbjct: 164 ---PVFRCGVIMFQKEFGERLVARVGEDNYGRLAINCQLFSKVTRVCNVSKGSFNPPPEV 220 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 S ++ F+ H +PI + + AF ++ KTL S +L Sbjct: 221 DSMIVKFVLHKDPINVDFPEFDGLLRVAFTRKNKTLHSSFMNKAVVKVLE 270 >gi|325962647|ref|YP_004240553.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans Sphe3] gi|323468734|gb|ADX72419.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans Sphe3] Length = 290 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 121/279 (43%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + I P K +GQNF++D N +++I ++ TV+E+G + L Sbjct: 15 ASDIRRLAEEIGIRPTKTLGQNFVIDGNTIRRIVAAADIGPDETVLEVGP-GLGSLTLGL 73 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A V+ +E D L + + ++ DA+KV P ++ Sbjct: 74 LDAAASVVAVEIDPVLAAKLPETVKEWRPGAAGNFHLVHADAMKVTELPV----QPTALV 129 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + + P ++ Q EV +R+ A S YG SV W + Sbjct: 130 ANLPYNVAVPVVLHLL---QYFPSLRHGLVMVQDEVADRLAAGPGSKTYGVPSVKAAWYS 186 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK+ S ++ F P E + + AF +RRKTLR +L Sbjct: 187 QMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATTATREQVFAVVDAAFAQRRKTLRAAL 246 Query: 242 KRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNI 275 E L AG++ R E + I F +I Sbjct: 247 AGWAGGAPEAERCLVAAGVDPTARGEVIDIGAFAKIAEA 285 >gi|213029736|ref|ZP_03344183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 212 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%) Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGT 131 + VIE D+ L+ +L I Q DA+ ++F + + P+R+ NLPYNI T Sbjct: 1 LTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRVFGNLPYNIST 59 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L+F+ S + + + QKEV R+ A NS YGRLSV+ + + + ++ Sbjct: 60 PLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVP 116 Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P PKV S V+ +PH P P + L +IT EAF +RRKT+R SL L Sbjct: 117 PSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVET 176 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 177 LTEMGIDPAMRAENISVAQYCQMANYLSENAPL 209 >gi|256028569|ref|ZP_05442403.1| dimethyladenosine transferase [Fusobacterium sp. D11] gi|289766489|ref|ZP_06525867.1| dimethyladenosine transferase [Fusobacterium sp. D11] gi|289718044|gb|EFD82056.1| dimethyladenosine transferase [Fusobacterium sp. D11] Length = 264 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV IE Sbjct: 3 FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N ++ D L+VD +K+ N +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSSKEN-YTLVMGDVLEVDLKKYINQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + ++ QKEVGERI A+ G L++ + +A +F I F P Sbjct: 119 IESKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264 >gi|260494381|ref|ZP_05814512.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33] gi|260198527|gb|EEW96043.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33] Length = 264 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ IL+ S N ++ D L+VD ++ N +++AN+PY I + ++ Sbjct: 62 IDKDLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + + +F I F+P Sbjct: 119 IENRD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEVEYLFTIPREFFYP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264 >gi|296329439|ref|ZP_06871928.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153448|gb|EFG94278.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 264 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N ++ D L+VDF+K+ N +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSSKEN-YTLVMGDVLEVDFKKYINQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + ++ +F I F P Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGESEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264 >gi|196010894|ref|XP_002115311.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens] gi|190582082|gb|EDV22156.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens] Length = 280 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 40/284 (14%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + I+ I E + TV+EIG G GNLT LL A+KVI E D + Sbjct: 2 GQHILKNPLIVNSIVEKAAIRSTDTVLEIGPGTGNLTVKLL-QKAKKVIACEVDPRLAAE 60 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ P +L II D LK + F +ANLPY I + +F + Sbjct: 61 LQKRVQGSPVSTKLHIIVGDVLKTELPYF------DVCVANLPYQISSPFVFKLL---LH 111 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQ+E R+ A+ Y RLS+ T K + + + F P PKV S Sbjct: 112 RPLFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLAKVDHLIKVGKNNFRPPPKVES 171 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETN 258 +V+ P P + +T+ F ++ +TL S K G + +L + I Sbjct: 172 SVVRIEPINPVPPINFKEWDGLTRIVFARKNRTLSASFKTQGVQTMLEKNFRIHCSIHNQ 231 Query: 259 -----------------------LRAENLSIEDFCRITNILTDN 279 RA ++ ++DF + + N Sbjct: 232 AIEEDINIAEKVDTILKSVNANARRARSMDMDDFLELLHAFNSN 275 >gi|238752274|ref|ZP_04613754.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380] gi|238709542|gb|EEQ01780.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380] Length = 222 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 8/220 (3%) Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPI 119 +T+ + + VIE D+ L Q ++L I Q+DA+K++F + P+ Sbjct: 1 MTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAEQAGQPL 58 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ + + + QKEV R+ A NS YGRL+V+ Sbjct: 59 RVFGNLPYNISTPLMFHLFG---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQ 115 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237 + + ++ P F P+PKV S V+ IPH+ P P + L +IT +AF +RRKT+ Sbjct: 116 YYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPNPVGDVRMLSRITTQAFNQRRKTV 175 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 176 RNSLGDLFTAEQLIELGIDPILRAENISVAQYCKLANWLS 215 >gi|238786684|ref|ZP_04630485.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641] gi|238725052|gb|EEQ16691.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641] Length = 222 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 8/220 (3%) Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPI 119 +T+ + + VIE D+ L Q ++L I Q+DA+KV+F + + P+ Sbjct: 1 MTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKVNFSELAKLAGQPL 58 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRL+V+ Sbjct: 59 RVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQ 115 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237 + + ++ P F P+PKV S V+ IPH+ P P + L +IT +AF +RRKT+ Sbjct: 116 YYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPNPVGDVRMLSRITTQAFNQRRKTV 175 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R SL L L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 176 RNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 215 >gi|269792402|ref|YP_003317306.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100037|gb|ACZ19024.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 267 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 8/254 (3%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL++ I ++I +++ V+EIG G G LT+ +L + ++ +E D++ Sbjct: 13 GQNFLINRGIAERIVDAAQISPQDIVLEIGPGKGVLTRQILATPCKALVAVELDRRLEEF 72 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L I+ Q P RL +I DAL++D + P +++ANLPY+I T +++ + + P Sbjct: 73 LSPIAQQDP-RLSLIWGDALRLDLSRDIPFH-PTKVVANLPYHITTPIVWKLLE-ELAPL 129 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ Q+E R+ L V + + P F P PKV S+V Sbjct: 130 GLVRMVLMVQREAAMRMLQGAKGKDRSPLGVTLEAMGWVSKAISVPPGAFRPIPKVNSSV 189 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIETNLR 260 I N +++ + +F +RRK L + + G GE + G+ N R Sbjct: 190 IRIDIDKNRELPTDPRWRRMLKASFSQRRKNLLNNWQAAGIPREEGERRIEALGLMANAR 249 Query: 261 AENLSIEDFCRITN 274 AE L+++ + + Sbjct: 250 AEELTLDQWLTLAR 263 >gi|226355955|ref|YP_002785695.1| dimethyladenosine transferase [Deinococcus deserti VCD115] gi|226317945|gb|ACO45941.1| putative dimethyladenosine transferase [Deinococcus deserti VCD115] Length = 292 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 93/276 (33%), Positives = 142/276 (51%), Gaps = 16/276 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+ G ++E+G G G LT+ + Sbjct: 24 SPARVRELLNRHGLRPTKSLGQNFLIDGNILRAIAEAGGAQAGARILEVGPGLGVLTREI 83 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + GA V +EKD++ P L + + +E+I DAL D+ R+IANL Sbjct: 84 ASRGAH-VTALEKDERLRPALAETLAGLD--VELIWGDALDFDYASL---PEGTRVIANL 137 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I LL ++ A P S T+L QKEVG+R+ A+ YG LS L Sbjct: 138 PYYITGVLLSRFMHA----PGIVSATVLVQKEVGQRLAARPGEDAYGFLSALAALHGSVR 193 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + D+ F P+P VTS+VI + P +L K + A RRKTLR +L+ +G Sbjct: 194 HVRDVPKGAFLPAPDVTSSVIRLDFDRSR-PAPEAALLKFVEGALHHRRKTLRNNLRMIG 252 Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L AG+ ++RAE++ + + L Sbjct: 253 HEGPAIDAALIAAGLRPDVRAEDVPLSKLEDVARRL 288 >gi|224534733|ref|ZP_03675305.1| dimethyladenosine transferase [Borrelia spielmanii A14S] gi|224513981|gb|EEF84303.1| dimethyladenosine transferase [Borrelia spielmanii A14S] Length = 274 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 146/284 (51%), Gaps = 20/284 (7%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N S+K L KI P+K GQN+L++ +I +KI ES + EIG G G Sbjct: 1 MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKKNEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + E D ++ IL + + N ++I+ D K + NI Sbjct: 61 AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFFKKYPTENKNID--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + F + + L QKE+ +RITA+ NS +Y +VL Sbjct: 116 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKINSKNYSSFTVLVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI + F+P+PKV ST + IP N I + K+ + F RRK L+ Sbjct: 172 SHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSNRRKKLKN 230 Query: 240 SL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 ++ K + EN L + ++ R EN+SIE+F +I+N LT Sbjct: 231 TIINFIANKTILKENFLKEY---SDKRPENISIEEFIQISNTLT 271 >gi|320103121|ref|YP_004178712.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644] gi|319750403|gb|ADV62163.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644] Length = 325 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 136/297 (45%), Gaps = 27/297 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+T+ I P+K GQNFL+DLN+ I + V+E+G G G LT+ + LG Sbjct: 9 LRTLFEREGIAPRKRYGQNFLIDLNLHDVIVAAGEVGPNDVVLEVGPGAGALTRRMADLG 68 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-------------KFFNIS 116 A VI +E D + ++ PN + ++Q DAL ++ Sbjct: 69 A-AVIAVEIDPAMARLTRNAVEGRPN-VRVLQRDALANKNRIAPEVLDAVRAGLAVDPVA 126 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 +++ANLPYN+ T +L N + A+ P E + + Q EV ERI A + YG LSV Sbjct: 127 RRFKLVANLPYNVATPILTNLLVAEE--PRVELMAVTIQWEVAERIVATPGTSAYGALSV 184 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTST--VIHFIPHLNPIPCCLESLKKITQEAFGKRR 234 LT A ++ + P VF+P P V S VI P + + + + F RR Sbjct: 185 LTNALASAEIVRKLPPSVFWPRPLVDSAIMVIRPDPARRTRLGDVVWFQSVIRRVFNHRR 244 Query: 235 KTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 K +R+ L E+LL QA + + RAE ++++ + + L + A Sbjct: 245 KNIRRVLHGYYRDMLTKSDIEDLLSQAELAPDARAETMTVDQLVGLAHRLKERLHAA 301 >gi|240102961|ref|YP_002959270.1| dimethyladenosine transferase [Thermococcus gammatolerans EJ3] gi|259494259|sp|C5A594|RSMA_THEGJ RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|239910515|gb|ACS33406.1| Ribosomal RNA adenine methylase transferase (Dimethyladenosine transferase) (ksgA) [Thermococcus gammatolerans EJ3] Length = 278 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 26/277 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +I+ Y + P + +GQNFL+ +I+++ + + + TV+EIG G G LT L A Sbjct: 7 SIIYKYNLRPNRTLGQNFLIVPDIIERNVKRAELSEKDTVLEIGPGLGVLTDELSK-KAG 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV IE D + IL+ S +E+I+ DA+KV++ +F ++++NLPY I + Sbjct: 66 KVYAIEADSRMIEILQREYS--WPNVELIKGDAVKVEWPEF------NKMVSNLPYQISS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F + + +E L++Q E ER+ A+ +Y RLS++ + ++ I Sbjct: 118 PVTFKLLKHE-----FERAVLIYQLEFAERMIAKPGDRNYSRLSLMVQAKANVELVERIG 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F+P PKV S V+ P P +E + + + F RR T+ +LK+ Sbjct: 173 RGAFWPRPKVDSAVVVLEPK--PEKERIELNENLVKALFQHRRSTVASALKKSAHMLGTD 230 Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 ++ L R LS E+ I L DN Sbjct: 231 KKSIKDYLSSLP-HAEKRVFQLSPEEVLDIEVYLRDN 266 >gi|83025305|gb|ABB95745.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 143/300 (47%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 61 IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI I + + L FQKEV ERI AQ + Sbjct: 121 VPDIRLVSNLPFNITMPFXVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|320583126|gb|EFW97342.1| dimethyladenosine transferase [Pichia angusta DL-1] Length = 319 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 16/251 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I + I + + V+EIG G GNLT +L ARKVI E Sbjct: 24 FKFNTDLGQHILKNPLIAQGIVDKAEIRPSDVVLEIGPGTGNLTVRILE-KARKVIASEV 82 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEII D +K++ +F++ I+N PY I + ++F Sbjct: 83 DPKMAAELTKRVQGTPYEKKLEIIMGDFMKLETLPYFDVC-----ISNTPYQISSGIVFK 137 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P L+FQ+E +TA+ Y RLS + + + F Sbjct: 138 LLSMPRPP---RIAVLMFQREFAMNLTARPGDALYNRLSANAQMWANVKHVMKVGKNNFR 194 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252 P PKV S+V+ P + + + F ++ KTL + + +L Sbjct: 195 PPPKVESSVVKVEPKIPRPNLDYNEWDGLLRFCFNRKNKTLNATFRNNKILEILENNYKT 254 Query: 253 -AGIETNLRAE 262 I + R E Sbjct: 255 FLSILSEQRGE 265 >gi|163841724|ref|YP_001626129.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC 33209] gi|162955200|gb|ABY24715.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC 33209] Length = 297 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + ++ + + + P K +GQNF++D N +++I ++ TV+EIG + L Sbjct: 21 AADIRRLAAELDVRPTKTLGQNFVIDGNTIRRIVAAAKIAPSETVLEIGP-GLGSLTLGL 79 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 A V+ +E D + L S+ +++ DALKV P ++ Sbjct: 80 LDAAAHVVAVEIDAKLAARLPQTISEFRPEKSGAFDVVTADALKVTE----LPQEPTALV 135 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ ++ + + E ++ Q EV +R+ A S YG SV W Sbjct: 136 ANLPYNVAVPVVLHLLEYFL---SLEHGLVMVQDEVADRLAAPPGSKTYGVPSVKAAWYA 192 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241 + I +VF+P+PK++S ++ FI P + + AF +RRKT+R +L Sbjct: 193 QVRKAGVIGMNVFWPAPKISSGLVEFIRREPPQTRAERREVFAVIDAAFAQRRKTVRAAL 252 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E +L AG++ R E L I F RI Sbjct: 253 AGWAGSGADAEQILIAAGVDPRARGEVLDIAAFSRIAEA 291 >gi|294899921|ref|XP_002776810.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] gi|239884011|gb|EER08626.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] Length = 354 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI E+S TV+EIG G GNLT LL L A+KV+ +E D + Sbjct: 51 KKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPRM 109 Query: 83 FPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + L++I+ DALK F F +ANLPY I + F ++ Sbjct: 110 AAEVKKRAQTAGRMNLKVIEGDALKTAFPVF------DVCVANLPYQISSPFTFKLLAHR 163 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + ++FQKE GER+ A+ +YGRL++ +K T + ++S F P P+V Sbjct: 164 ---PVFRCGVIMFQKEFGERLVARVGEENYGRLAINCQLFSKVTRVCNVSKGSFNPPPEV 220 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 S ++ F+ H +PI + + AF ++ KTL S +L Sbjct: 221 DSMIVKFVLHKDPINVDFPEFDGLLRIAFTRKNKTLHSSFMNKAVIKVLE 270 >gi|291453553|ref|ZP_06592943.1| dimethyladenosine transferase dimethyltransferase [Streptomyces albus J1074] gi|291356502|gb|EFE83404.1| dimethyladenosine transferase dimethyltransferase [Streptomyces albus J1074] Length = 287 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G + L Sbjct: 11 PSDIRELATALGVRPTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGP-GLGSLTLGL 69 Query: 67 TLGARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRII 122 A+ V +E D L + ++ P R ++ DAL+V +P ++ Sbjct: 70 LETAQHVTAVEIDDTLAAALPATVEARLPARAAHFALVHSDALRVTE---LPGPAPTALV 126 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P E ++ Q EV +R+ A S YG SV W Sbjct: 127 ANLPYNVAVPVLLHMLE---HFPTIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 183 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240 + I +VF+P+P V S ++ + P E + + AF +RRKTLR + Sbjct: 184 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAA 243 Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274 L E L AG+ R E+L++E+F I Sbjct: 244 LSGWAGSAAAAEAALVAAGVSPQARGESLTVEEFAAIAE 282 >gi|83025299|gb|ABB95742.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 61 IGNGARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I + + L FQKEV ERI A+ + Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIARPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L +N L +A I N A +L + DF +I D D Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|50364820|ref|YP_053245.1| dimethyladenosine transferase [Mesoplasma florum L1] gi|62900520|sp|Q6F2B4|RSMA_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50363376|gb|AAT75361.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Mesoplasma florum L1] Length = 267 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 122/269 (45%), Gaps = 18/269 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQNF+ D N++ KI G+ +IEIG G G LT+ LL KV+ IE Sbjct: 2 KVEAKKKFGQNFISDQNLINKIVSILGNDKDQLIIEIGPGTGALTK-LLAQKYNKVVAIE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-----SPIRIIANLPYNIGTR 132 D PILK + + E+ D L VDFEK + II+N+PY I + Sbjct: 61 IDTDMEPILKKEITN--DNFELFLSDVLLVDFEKLIKEKRQHENQKVSIISNMPYYITSE 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +LF ++ + QKEV R+ + K +Y LSV + F + Sbjct: 119 ILFRTLNVSDK---LTKAVFMMQKEVAIRVCSYKGENNYNNLSVACEFYADKKYEFTVPK 175 Query: 193 HVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247 H+F+P PKV S +I + ++ F RRKT+ +L + + Sbjct: 176 HMFYPVPKVDSAIISLTFNNKYTEQIKDKDKFLTFLRKIFNNRRKTILNNLSNVTNDKTK 235 Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITN 274 +L I+ +LR E + +EDF RI N Sbjct: 236 ANEILDNLNIDKSLRPEVVGLEDFIRIYN 264 >gi|319950588|ref|ZP_08024496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Dietzia cinnamea P4] gi|319435727|gb|EFV90939.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Dietzia cinnamea P4] Length = 244 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 13/245 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + + P K +GQNF+ D N ++KI +SG TVIE+G G G+LT LL Sbjct: 1 MRALAAELGVTPTKTLGQNFVHDANTVRKIVTASGVGRDDTVIEVGPGLGSLTLPLLD-A 59 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSPIRIIANL 125 A +V+ +E D L ++ R L ++ DAL V SP ++ANL Sbjct: 60 AGRVVAVEIDPVLAARLPRTVAERAPRLAELLTVVGADALAVSAADL-GEPSPTALVANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ +L + ++ P + ++ Q EV +R+ A S YG SV G+ Sbjct: 119 PYNVSVPVLLHLLAE---VPTIRTALVMVQLEVADRLAAAPGSRVYGVPSVKAGFFGTVR 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES---LKKITQEAFGKRRKTLRQSL 241 + +VF+P P V S ++ + P E + + AF +RRKTLR +L Sbjct: 176 RTGVVGRNVFWPVPNVESGLVRIDAYPEAPWDLGAEHRRRVFAVVDAAFAQRRKTLRAAL 235 Query: 242 KRLGG 246 G Sbjct: 236 SGWAG 240 >gi|156358457|ref|XP_001624535.1| predicted protein [Nematostella vectensis] gi|156211322|gb|EDO32435.1| predicted protein [Nematostella vectensis] Length = 325 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 23/295 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + +L Y + +K QNF+LDLNI KIA+ S V E+GAGPG+LT+ + Sbjct: 7 PMPKVSDLLRLYGLTAQKQFSQNFILDLNITDKIAKVSDVF-DCYVCEVGAGPGSLTRSI 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP------- 118 L GAR V +E D++F P L+ + R+ + D +K + F +SP Sbjct: 66 LNAGARHVAAVEIDRRFLPSLQLLEDAAKGRMTLHHADIMKFNIPSAFPRASPTGWESGD 125 Query: 119 ---IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPH 170 +R++ NLP+ + LL W+ A + + L+FQKEV E I A + S + Sbjct: 126 IPGVRMVGNLPFGVSIPLLLQWLEAIPERSGPFAFGRTPMALVFQKEVAENIVASEGSYN 185 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RL+V+ + +A + + VF P PKV ++++ P + P I ++++ + Sbjct: 186 RSRLAVMVQYLCEAKRRYSLPSSVFVPKPKVDASLVVLTPRVTPLIDAPFIVVEQVVKAV 245 Query: 230 FGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 F RRK + LK + +LL + + RA L++ +F + + + Sbjct: 246 FAMRRKFIHTPLKLMFPGKEELVGDLLRLSSVNPEQRAHELAMTEFNSLCSAYLE 300 >gi|262066560|ref|ZP_06026172.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC 33693] gi|291379742|gb|EFE87260.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC 33693] Length = 264 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 125/269 (46%), Gaps = 17/269 (6%) Query: 18 KIIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 KK GQNFL + + IL KI E S + ++EIG G G LT +L+ A+K+ + Sbjct: 2 DFKHKKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVER-AKKLTCV 60 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ L+ S N ++ D L+VD K+ N +++AN+PY I + ++ Sbjct: 61 EIDKDLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKG--TKVVANIPYYITSPIINK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + ++ QKEVGERI A+ L++ + +A +F I F Sbjct: 118 LIENKE---LIDEAYIMVQKEVGERICAKAG-KERSILTLAVEYYGEADYLFTIPREFFN 173 Query: 197 PSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GEN 248 P P V S I + + + K + AF +RK + +L LG + Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKVSEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 +L+Q I N RAEN+SI+ F + +I Sbjct: 234 ILNQVEISENERAENISIDKFIELIDIFE 262 >gi|72389977|ref|XP_845283.1| ribosomal RNA adenine dimethylase family protein, conserved [Trypanosoma brucei TREU927] gi|62359277|gb|AAX79719.1| ribosomal RNA adenine dimethylase family protein, conserved [Trypanosoma brucei] gi|70801818|gb|AAZ11724.1| ribosomal RNA adenine dimethylase family protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 344 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 13/251 (5%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T + LKT S ++ K GQ+ L + ++ I E + V+EIG G GNL Sbjct: 43 TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 102 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119 T+ LL A+KVI E D + L P +L++I+ + L +F F Sbjct: 103 TEKLL-QAAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 155 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 + +AN+PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + Sbjct: 156 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 211 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + + + IS + F P PKV S+VI P E + + F ++ K + Sbjct: 212 LLARCSHLMKISKNSFNPPPKVESSVIRLDPKHPAPSVDFEEWDGLVKHIFNRKNKKVSS 271 Query: 240 SLKRLGGENLL 250 + L Sbjct: 272 IFRTKNTVRTL 282 >gi|321258494|ref|XP_003193968.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus gattii WM276] gi|317460438|gb|ADV22181.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus gattii WM276] Length = 324 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 12/231 (5%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + + + I + + V+E+G G GNLT +L RKV+ +E D + Sbjct: 44 KFGQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILPAC-RKVVAVEMDPRMA 102 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ P +LE+I D +K D F +I+N PY I + L+F +S Sbjct: 103 AEVQKRVLGKPEQKKLELIVGDFVKADLPYF------DVLISNTPYQISSPLVFKLLSQR 156 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P L+FQ+E R+ A N+ +GRL+ + + + F P P+V Sbjct: 157 PIP---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQV 213 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ +P P P E + + F + KTLR K G LL + Sbjct: 214 ESSVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 264 >gi|220912054|ref|YP_002487363.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6] gi|219858932|gb|ACL39274.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6] Length = 290 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 1 MTMNNK--------SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI 52 MT N + ++ + + P K +GQNF++D N +++I ++G TV+ Sbjct: 1 MTEPNPAAPAPLFGASDIRRLAGEIGVRPTKTLGQNFVIDGNTIRRIVAAAGVGADETVL 60 Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVD 108 E+G + L A V+ +E D L ++ +++ DA+KV Sbjct: 61 EVGP-GLGSLTLGLLDAAAAVVAVEIDPVLAAKLPATVAEWRPAAVGNFHLVEADAMKVT 119 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 P ++ANLPYN+ ++ + + P + ++ Q EV +R+ A S Sbjct: 120 DLPV----EPTALVANLPYNVAVPVVLHLLE---HFPSLQHGLVMVQDEVADRLAAGPGS 172 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQ 227 YG SV + W + I +VF+P+PK+ S ++ F P + + + Sbjct: 173 KTYGVPSVKSAWYGQMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATSATRQQVFAVID 232 Query: 228 EAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 AF +RRKTLR +L G E L AG++ R E + I F RI Sbjct: 233 AAFAQRRKTLRAALSGWAGGGAEAERCLVAAGVDPTARGEVIDIAAFARIAEA 285 >gi|70987085|ref|XP_749024.1| dimethyladenosine transferase [Aspergillus fumigatus Af293] gi|66846654|gb|EAL86986.1| dimethyladenosine transferase [Aspergillus fumigatus Af293] gi|159123206|gb|EDP48326.1| dimethyladenosine transferase [Aspergillus fumigatus A1163] Length = 392 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 9/239 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I I + + TV+E+G G G LT +L A+KVI +E Sbjct: 32 FKFNTDIGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVEL 90 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +L++I D +K D K I+N PY I + L+F Sbjct: 91 DPRMAAEVTKTVQGTPAEKKLQVILGDFVKTDLSKL---PPFQICISNTPYQISSPLIFK 147 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P ++ L+ Q+E R+ A+ Y RLSV + ++ + + + + F Sbjct: 148 LLSMPNPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFR 204 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S+V+ P + + + + F ++ KTLR L+ + I Sbjct: 205 PPPQVESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLRAGFMATKVRALIERNWI 263 >gi|260889782|ref|ZP_05901045.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254] gi|260860388|gb|EEX74888.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254] Length = 282 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 13/268 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL D N+ +I + + + V+EIG G G LT+ L+ ++ + E Sbjct: 19 NHKAKKNNGQNFLNDSNLSDEILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFLTAFE 77 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D P L N ++I D ++ D +KFF ++++AN+PY I + ++ Sbjct: 78 IDDDLIPFLNKKFENKQN-FKLIHQDFMEADLKKFFEDKKNVKVVANIPYYITSPIINKL 136 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + + L+ QKEV ERI +Q +S + L+ + +A +F + F P Sbjct: 137 LEYREN---IDEIYLMVQKEVAERIASQPHSKNMSLLTHAVQFYAEAEYLFTVPKEKFDP 193 Query: 198 SPKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----L 249 PKV S + E K +EAF +RK++ +L +LG Sbjct: 194 VPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLTKLGFSKDVVGTA 253 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L + G R E S+++F IL Sbjct: 254 LEKVGKTRLARTEEFSVQEFIDFIEILE 281 >gi|261328672|emb|CBH11650.1| ribosomal RNA adenine dimethylase family protein,conserved, putative [Trypanosoma brucei gambiense DAL972] Length = 383 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 13/251 (5%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T + LKT S ++ K GQ+ L + ++ I E + V+EIG G GNL Sbjct: 82 TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 141 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119 T+ LL A+KVI E D + L P +L++I+ + L +F F Sbjct: 142 TEKLL-QAAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 194 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 + +AN+PY I + L+F + P ++ L+FQ+E R+ AQ S Y RLSV + Sbjct: 195 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 250 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + + + IS + F P PKV S+VI P E + + F ++ K + Sbjct: 251 LLARCSHLMKISKNSFNPPPKVESSVIRLDPKHPAPSVDFEEWDGLVKHIFNRKNKKVSS 310 Query: 240 SLKRLGGENLL 250 + L Sbjct: 311 IFRTKNTVRTL 321 >gi|83025313|gb|ABB95749.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFXLDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 61 IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I + + L FQKEV ERI AQ + Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L +N L +A I+ N A +L + DF +I D D Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIQPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|15639328|ref|NP_218777.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum str. Nichols] gi|189025570|ref|YP_001933342.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum SS14] gi|27151559|sp|O83357|RSMA_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732635|sp|B2S2T4|RSMA_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|3322613|gb|AAC65323.1| dimethyladenosine transferase (ksgA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018145|gb|ACD70763.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum SS14] gi|291059727|gb|ADD72462.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum str. Chicago] Length = 285 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 19/284 (6%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 N + +L L+ + K GQNFLLD + ++ + G V EIGAG G +T Sbjct: 7 NSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMT-A 65 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 LL + + V E D+ F L+ + H + +I+ D L+ P ++ N Sbjct: 66 LLVQNSDFLTVFEIDRGFVQTLRKLFDAH---VRVIEGDVLQQWHAAAAQE-QPACVLGN 121 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYNI R + N I + ++ + + QKE+G R+TA Y SVL W+ + Sbjct: 122 LPYNIAARFIGNTIES---GYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEV 178 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ +++P F+P P V S + P +T+ F RRKT+R +L Sbjct: 179 RVIRNVAPVCFWPRPHVVSQALVLTKRNAVPSCVDPALFLHVTKTLFSARRKTVRNNLLT 238 Query: 244 L----------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 E L +AGI+ RAE LSI DF +++ L Sbjct: 239 WQKRMPGGAAVCVEELCARAGIDARARAEQLSIYDFITLSDTLR 282 >gi|39939217|ref|NP_950983.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] gi|62900544|sp|Q6YPJ4|RSMA_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39722326|dbj|BAD04816.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] Length = 268 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 138/262 (52%), Gaps = 19/262 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D+N+L KI + V+EIG G G LT++++ A+ V+ E D Sbjct: 6 KKKYGQNFLTDVNLLNKIVTKASIT-DKNVLEIGPGKGALTKIIVPQ-AKHVLAYEIDAT 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 P L ++ N + II DD LK DF+ +F+ +S + +I NLPY I + +LF Sbjct: 64 LKPFLN---FENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I P T++ QKEVG R+ AQ N+ +Y LSV+ + + ++ H+FFP Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENL---LH 251 +PKV S VI + N P L+ K + +F ++RKTL +L L E + Sbjct: 177 APKVDSIVIKLTKNNNICPTFLQQFIKFVKASFKQKRKTLLNNLSCQFLLSKETIIPFFL 236 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 Q I +RAE +++E F ++T Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258 >gi|323453421|gb|EGB09293.1| hypothetical protein AURANDRAFT_13505 [Aureococcus anophagefferens] Length = 255 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 20/267 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 PK+ +GQN+L D N KI +S G G V+E+G G G LT++LL +++ + Sbjct: 1 FRPKQSLGQNYLSDQNYATKIVDSLGDDSERGRRVVELGPGLGALTRLLLRQYP-EMVAV 59 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135 E D + +L+ +P ++ D L VD+ K + +I NLPY I +++LF Sbjct: 60 EIDGRAVELLEQT---YPAPFTVLHSDVLAVDYTKLAAARGGRLSVIGNLPYYITSQILF 116 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + Q EV R+ A+ + YG LSV+ + + F I F Sbjct: 117 CLCDHHA---SVSRAVVTMQHEVALRLVAKPRTKDYGILSVVFQLYAQPKIAFKIPHTAF 173 Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 +P PKVTS ++ +P L+ + AF +RRK LRQSLK +L+ A Sbjct: 174 YPQPKVTSALVAIDFPEGGVDLPVDPRKLRTVVTTAFRQRRKMLRQSLKG-----ILNGA 228 Query: 254 GIE---TNLRAENLSIEDFCRITNILT 277 + R E L+ +F +T + Sbjct: 229 TLPDQFATKRPEELAPAEFLDLTGAIY 255 >gi|303232891|ref|ZP_07319575.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4] gi|302481081|gb|EFL44157.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4] Length = 351 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 19/289 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + + +L + + K +GQNFL+D ++ KI + +++E+G G G L+ L Sbjct: 52 NPRATRRVLEQHGLYAKHRLGQNFLVDDAVIGKILALAQPRAHTSLLEVGPGIGTLSLAL 111 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD------FEKFFNISSPI 119 L ++I IEKD +L + + N + + DAL+VD F K NI P Sbjct: 112 LQQHC-QLIAIEKDDDLLDVLASTCALYENAMHVYHSDALRVDAASLQAFCKARNIPQPA 170 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPY I L+ + P E +T++ Q EV R+ A+ + YG S Sbjct: 171 ALVANLPYQIAATLVLQYFEDM---PQLERMTVMVQSEVACRMAAKPHDKLYGAYSAKLA 227 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRK 235 F + P F P+P VTS VI H C L++ + AF +RRK Sbjct: 228 LYAAPAGSFVVKPSSFMPAPHVTSQVIALQRHAQADLVCDGELRRRVCVLIDAAFAQRRK 287 Query: 236 TLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 TL L G L + + +RAE L F + L + Sbjct: 288 TLVNCLSAAGIAPDAARACLREMQLAPAIRAEVLCAAQFVELYARLHTH 336 >gi|310779117|ref|YP_003967450.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926] gi|309748440|gb|ADO83102.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926] Length = 263 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 126/268 (47%), Gaps = 17/268 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + +LK+I E SG + ++EIG G G LT++LL + KV +E Sbjct: 3 FKHKKKFGQNFLTNQGEVLKQIMEVSGVEETDVILEIGPGEGALTELLLEASS-KVNCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ IL ++P + +I D L VDF+K I ++++AN+PY I + ++ Sbjct: 62 IDRDLEKILIKKFDENP-KFNLIMQDVLTVDFDK--QIGEKVKVVANIPYYITSPIINKL 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + + ++ QKEV ERI A+ L++ + A +F I F P Sbjct: 119 IENRK---YVDEIYIMVQKEVAERICAKSG-KERSTLTLAVEYFGDAEYLFTIPKEFFQP 174 Query: 198 SPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 PKV S + ++ K + +F +RK L ++ LG Sbjct: 175 VPKVDSAFMSIKLRKDNSRIEEIPEDTFFKYVKASFSNKRKNLINNISTLGIPKDIVREK 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L QA I+ RAE LSI++F + + Sbjct: 235 LEQAEIDGKRRAETLSIDEFMNLIKVFE 262 >gi|183984448|ref|YP_001852739.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M] gi|183177774|gb|ACC42884.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M] Length = 274 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 19/249 (7%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94 +K+ SG V+E+G G G+LT LL GA V +E D L ++H Sbjct: 2 RKVVTVSGITRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSDS 60 Query: 95 --NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 RL ++ D L + + + P ++ANLPYN+ L + ++ P +T+ Sbjct: 61 EIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAE---FPSIRVVTV 115 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + Q EV ER+ A+ YG SV G+ + +SP VF+P P+V S ++ + Sbjct: 116 MVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYE 175 Query: 213 NPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAEN 263 E+ ++ + AF +RRKT R + G N L A I+ R E Sbjct: 176 TTPWPTDENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRGET 235 Query: 264 LSIEDFCRI 272 LSIEDF R+ Sbjct: 236 LSIEDFVRL 244 >gi|262037354|ref|ZP_06010819.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264] gi|261748611|gb|EEY35985.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264] Length = 278 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 16/275 (5%) Query: 15 SHYKI---IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 Y I KK GQNFL D + +I E + V+EIG G G LT+ L+ ++ Sbjct: 5 KKYGNEKNIAKKKYGQNFLTDGELSDRILEEADIDKNTEVVEIGPGLGFLTEKLIE-KSK 63 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + E D P+L N L ++ D L+++ ++ I+++AN+PY I + Sbjct: 64 HLTAFEIDDDLIPVLNKKFKDKDNFL-LVHKDFLEINLGEYLEDRENIKVVANIPYYITS 122 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ I + + L+ QKEV ERI+++ S + L+ + + +F + Sbjct: 123 PIINRLIE---FRDNISEIYLMVQKEVAERISSKPRSKNMSILTHAVQFFAETEYLFTVP 179 Query: 192 PHVFFPSPKVTST---VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 F P PKV S ++ E K ++AF +RK++ +L LG Sbjct: 180 KEKFDPVPKVDSAFLKIVLLKDKRYESQISEEKYFKYLKKAFSNKRKSISNNLSELGFGK 239 Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 +L + G + R E S+++F IL + Sbjct: 240 EKISGVLQKVGKTSLARTEEFSVQEFIDFIKILEN 274 >gi|324516507|gb|ADY46552.1| Dimethyladenosine transferase [Ascaris suum] Length = 308 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 80/288 (27%), Positives = 125/288 (43%), Gaps = 43/288 (14%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + I+ I E S + TV+E+G G GNLT +L A+KVI E D + Sbjct: 30 GQHILKNPGIVNAIIEKSAIKNTDTVLEVGPGTGNLTVKILEH-AKKVIACEIDTRMIAE 88 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 LK P +LE+ D +KV++ FF++ +ANLPY I + +F + Sbjct: 89 LKKRVLGTPVQQKLEVRPGDVMKVEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 142 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ Y RLSV K + + F P PKV S Sbjct: 143 PRY---AVLMFQKEFADRLLAKPCEKSYCRLSVNVQLLAKVEHLMRVKRTEFRPPPKVDS 199 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------------------- 242 V+ P P P + + + F ++ KTL K Sbjct: 200 AVVRIEPRNPPPPINFQEWDGLLRIVFLRKSKTLLSIFKQKQVCDLLEKNYRIVCSAKNM 259 Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 R E++L ++G RA + IEDF ++ ++ + +D+ Sbjct: 260 PLDKSFKIRNKLEDILTKSGF-ATKRARRMDIEDFLQLL-LVFNKEDV 305 >gi|332297935|ref|YP_004439857.1| Ribosomal RNA small subunit methyltransferase A [Treponema brennaborense DSM 12168] gi|332181038|gb|AEE16726.1| Ribosomal RNA small subunit methyltransferase A [Treponema brennaborense DSM 12168] Length = 294 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 15/280 (5%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + +LK L + +K GQNFL++ N ++ ++ G TV E+G G G +T+ Sbjct: 14 DSPAALKKFLDENGMAMQKKFGQNFLINGNARVRLIDTLDIGAGSTVWEVGPGLGAMTKE 73 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122 +L+ GA K+ V E D+ F + + + + D LK +++ P R Sbjct: 74 ILSRGA-KLTVFEIDRGFASFIGKFFEPYARSGAFILREGDVLKT-WKQAAEQGIPDRFF 131 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI ++ + ISA ++ + QKEV ER+ A +Y SVL W Sbjct: 132 GNLPYNIAAAIVGDLISAGI---RFDKAVVTVQKEVAERMCAAAGDGNYSSFSVLCNWAY 188 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS 240 + D++ F+P P V S + PCC ++ + F RRKT++ + Sbjct: 189 DVQPVMDLAGGNFWPRPNVDSRAVLMTKKAA-FPCCENPGHFMQLQRSLFVSRRKTVKNN 247 Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNI 275 L ++L AGI+ RAE L++E ++++I Sbjct: 248 LTAFYRNAEKAADVLSAAGIDPQQRAERLTVEQLLQLSDI 287 >gi|296134601|ref|YP_003641843.1| dimethyladenosine transferase [Thiomonas intermedia K12] gi|295794723|gb|ADG29513.1| dimethyladenosine transferase [Thiomonas intermedia K12] Length = 268 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 13/260 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + +K GQ+FL+D I+ I + L G ++EIG G G LT LL R + +E Sbjct: 16 HVARKRFGQHFLIDQQIIHGIVDCINPLAGERLVEIGPGLGALTLALLQRIPR-LAAVEI 74 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ + Q P+++E+I+ DAL + F ++ + +R++ NLPYNI T LLF+ + Sbjct: 75 DRDLAARWRK---QAPDKVELIEADALDFN---FASLGTDLRLVGNLPYNISTPLLFHLM 128 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV +R+ A +GRLSV+ WR + + D+ P F P Sbjct: 129 EVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185 Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P+V S V+ P + L + AF +RRK +R SL + + Sbjct: 186 PQVDSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSLGPWLDTQG-YAGDFD 244 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE +S ++ + L Sbjct: 245 LQRRAEEVSTAEYIALAQSL 264 >gi|237744029|ref|ZP_04574510.1| dimethyladenosine transferase [Fusobacterium sp. 7_1] gi|229431258|gb|EEO41470.1| dimethyladenosine transferase [Fusobacterium sp. 7_1] Length = 264 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ IL+ S N ++ D L+VD ++ N +++AN+PY I + ++ Sbjct: 62 IDKDLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + +A +F I F P Sbjct: 119 IENRD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264 >gi|83025309|gb|ABB95747.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 142/300 (47%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 61 IGNGARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I + + L FQKEV ERI AQ + Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGXXVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281 F ++KT+R+++ L N L +A I N A +L + DF +I D D Sbjct: 241 FHGKQKTVRKTIGHLFPNXNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|19112914|ref|NP_596122.1| 18S rRNA dimethylase [Schizosaccharomyces pombe 972h-] gi|26556992|sp|Q9USU2|DIM1_SCHPO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|6048291|emb|CAB58154.1| 18S rRNA dimethylase [Schizosaccharomyces pombe] Length = 307 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + + + I + + TV+E+G G GNLT +L ARKVI +E Sbjct: 22 FKFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEM 80 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +L+++ D +K D F ++N PY I + L+F Sbjct: 81 DPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF------DVCVSNTPYQISSPLVFK 134 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + L+FQ+E R+ A+ P Y RLS + + + F Sbjct: 135 LLQQRPAP---RAAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFR 191 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P P V S+V+ P P P E + + F ++ KT+ K ++ Sbjct: 192 PPPLVESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFKTSSIIEMVE 246 >gi|294338548|emb|CAZ86877.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Thiomonas sp. 3As] Length = 268 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 13/260 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + +K GQ+FL+D I++ I + ++EIG G G LT LL R + +E Sbjct: 16 HVARKRFGQHFLIDQQIIQGIVDCINPQADERLVEIGPGLGALTLALLQRIPR-LAAVEI 74 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ S Q P+++E+I+ DAL + F ++ + +R++ NLPYNI T LLF+ + Sbjct: 75 DRDLAA---RWSKQAPDKVELIEADALDFN---FASLGTDLRLVGNLPYNISTPLLFHLM 128 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV +R+ A +GRLSV+ WR + + D+ P F P Sbjct: 129 DVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185 Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV S V+ P + L + AF +RRK +R SL + + Sbjct: 186 PKVNSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSLGPWLDTQG-YAGDFD 244 Query: 257 TNLRAENLSIEDFCRITNIL 276 RAE +S ++ + L Sbjct: 245 LQRRAEEVSTAEYIALAQSL 264 >gi|331229364|ref|XP_003327348.1| dimethyladenosine transferase dimethyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309306338|gb|EFP82929.1| dimethyladenosine transferase dimethyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 341 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 15/235 (6%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 +GQ+ L + + + I + + V+E+G G GNLT +L + + V+E D + Sbjct: 50 KLGQHILKNPLVAQTIVDKANLKTTDKVLEVGPGTGNLTVKILEKNCKSLTVVEMDPRMA 109 Query: 84 PILKDISSQHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L + +LEII D LK + F I+N PY I + L+F + Sbjct: 110 FELSKRFQNAKDLNFKRKLEIIVGDFLKTELPYF------DVCISNTPYQISSPLVFKLL 163 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + L+FQKE G R++A+ S + RLSV +K T + ++ F P Sbjct: 164 EHR---PLFRVAILMFQKEFGLRLSARPGSKLWSRLSVNVQLYSKVTHLMNVGKANFRPP 220 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGGENLLHQ 252 P V S V+ P P +T+ F +R KT+R S N+L Sbjct: 221 PLVESCVVKIEPLNPPPNIAFNEFDGLTRICFNRRNKTVRASFFASNSTLNMLEA 275 >gi|238782671|ref|ZP_04626701.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970] gi|238716331|gb|EEQ08313.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970] Length = 214 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 7/210 (3%) Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNI 129 ++ VIE D+ L Q ++L I Q DA+KV+F + + P+R+ NLPYNI Sbjct: 2 DRMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFAELAELAGQPLRVFGNLPYNI 60 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ S + + QKEV R+ A NS YGRL+V+ + + + Sbjct: 61 STPLMFHLFSYTNA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLE 117 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ IPH+N P P + L +IT +AF +RRKT+R SL L Sbjct: 118 VPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLFTA 177 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + GI+ LRAEN+S+ +C++ N L+ Sbjct: 178 EQLIELGIDPILRAENISVAQYCKLANWLS 207 >gi|237739754|ref|ZP_04570235.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31] gi|229423362|gb|EEO38409.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31] Length = 264 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 17/269 (6%) Query: 18 KIIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 KK GQNFL + + IL KI E S + ++EIG G G LT +L+ A+K+ + Sbjct: 2 DFKHKKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVER-AKKLTCV 60 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ L+ S N ++ D L+VD K+ N +++AN+PY I + ++ Sbjct: 61 EIDKDLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKG--TKVVANIPYYITSPIINK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + ++ QKEVGERI A+ L++ + +A +F I F Sbjct: 118 LIENKE---LIDEAYIMVQKEVGERICAKAG-KERSILTLAVEYYGEADYLFTIPREFFN 173 Query: 197 PSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GEN 248 P P V S I + + + K + AF +RK + +L LG + Sbjct: 174 PVPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 +L++ I N RAEN+SI+ F + +I Sbjct: 234 ILNRVEISENERAENISIDKFIELIDIFE 262 >gi|58259713|ref|XP_567269.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus neoformans var. neoformans JEC21] gi|134116780|ref|XP_773062.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255682|gb|EAL18415.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229319|gb|AAW45752.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 325 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 12/231 (5%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + + + I + + V+E+G G GNLT +L RKV+ +E D + Sbjct: 45 KFGQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILPAC-RKVVAVEMDPRMA 103 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ P +LE+I D +K D F +I+N PY I + L+F +S Sbjct: 104 AEVQKRVLGKPEQKKLELIVGDFVKADLPYF------DVLISNTPYQISSPLVFKLLSQR 157 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P L+FQ+E R+ A N+ +GRL+ + + + F P P+V Sbjct: 158 PIP---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQV 214 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ +P P P E + + F + KTLR K G LL + Sbjct: 215 ESSVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 265 >gi|170762429|ref|YP_001752686.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920250|ref|ZP_02931616.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508664|ref|ZP_02958159.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701740|ref|ZP_02971428.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|27151612|sp|Q9PPN8|RSMA_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028824|sp|B1AJP2|RSMA_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|168828006|gb|ACA33268.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902651|gb|EDT48940.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676132|gb|EDT88037.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701010|gb|EDU19292.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 277 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 17/277 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K L +P K MGQNFLL NI KI + + ++EIG G G +T++L+ Sbjct: 6 IKNKLKQESFVPSKKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILV-QK 64 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS------SPIRIIA 123 +I IE D++ + LK + II +D L VD + I+++A Sbjct: 65 TNILIAIELDKRLYAHLKTYIKT--SNFHIINNDVLCVDLDNLILDYNNTQKIQKIKVVA 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I ++++ I + ++ QKE+ ERI A+ N+ Y +VL K Sbjct: 123 NLPYAISSKIVLKIIQSK----LINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCK 178 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++F+++ F P PKV S VIH N + +E L K + F +RK L+ +L Sbjct: 179 TKILFEVNAKEFHPQPKVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLKNNLSN 238 Query: 244 LGGENLLHQAGI----ETNLRAENLSIEDFCRITNIL 276 + +++Q I + NLRAEN+ + F ++ N L Sbjct: 239 IYDIKIINQMFIDYNLDMNLRAENIEPKMFLKLFNYL 275 >gi|315050182|ref|XP_003174465.1| dimethyladenosine transferase dimethyltransferase [Arthroderma gypseum CBS 118893] gi|311339780|gb|EFQ98982.1| dimethyladenosine transferase dimethyltransferase [Arthroderma gypseum CBS 118893] Length = 377 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 12/233 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + + + I + + TV+E+G G GNLT +L A Sbjct: 25 KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L P RLE++ D +K + F I+N PY Sbjct: 84 KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ P L+FQ+E R+ A+ Y RLSV K + Sbjct: 138 ISSPLTFKLLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P P V S+V+ +P + E + + AF ++ KTLR S Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247 >gi|291280249|ref|YP_003497084.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1] gi|290754951|dbj|BAI81328.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1] Length = 269 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 15/273 (5%) Query: 13 ILSHYKIIP---KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ YK KK +GQ+FL + + + +I + V+EIG G G LT +L G Sbjct: 4 LIKAYKSEFNKTKKSLGQHFLTNKHFISEIVSFLDLKEHDNVVEIGPGCGVLTYEILQKG 63 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + V++ D L N L+II D +++ + + ++ NLPYN+ Sbjct: 64 VN-LTVVDIDSDVCDFLSRYLYYFKN-LKIINKDFIEITRDDLPD--GKLKFAGNLPYNV 119 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 ++ + + E +T +FQKEV +R+T++ S Y LS+ + + + Sbjct: 120 SVKIFEKCVD---FIDDIELMTFMFQKEVADRLTSEPCSKTYSSLSIFAQYYFNIEKIRN 176 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 IS F+P+ KVTSTV+ FIP + F +RKTL+ +L L + Sbjct: 177 ISGANFWPNTKVTSTVLKFIPRERYFNDLNKEKRFFDFVMSCFKSKRKTLKNNLSYL-SK 235 Query: 248 NLLHQAGIE--TNLRAENLSIEDFCRITNILTD 278 L + +RAE LS++DF ++ ++ + Sbjct: 236 EQLEKIDKHFGEKIRAEQLSLDDFIKLFEMIEN 268 >gi|118619728|ref|YP_908060.1| dimethyladenosine transferase [Mycobacterium ulcerans Agy99] gi|118571838|gb|ABL06589.1| dimethyladenosine transferase KsgA [Mycobacterium ulcerans Agy99] Length = 274 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 19/249 (7%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94 +K+ SG+ V+E+G G G+LT LL GA V +E D L ++H Sbjct: 2 RKVVAVSGTTRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSDS 60 Query: 95 --NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 RL ++ D L + + + P ++ANLPYN+ L + ++ P +T+ Sbjct: 61 EIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAE---FPSIRVVTV 115 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + Q EV ER+ A+ YG SV G+ + +SP VF+P P+V S ++ H Sbjct: 116 MVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRHE 175 Query: 213 NPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAEN 263 E+ ++ + AF +RRKT R + G N L A I+ R E Sbjct: 176 TTPWPTDENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRGET 235 Query: 264 LSIEDFCRI 272 LSIEDF R+ Sbjct: 236 LSIEDFVRL 244 >gi|71013449|ref|XP_758591.1| hypothetical protein UM02444.1 [Ustilago maydis 521] gi|46098249|gb|EAK83482.1| hypothetical protein UM02444.1 [Ustilago maydis 521] Length = 334 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 12/220 (5%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + + + I + + V+E+G G GNLT +L A+K V+E D + Sbjct: 54 KFGQHILKNPLVAQGIVDKANLKPTDMVLEVGPGTGNLTVRILE-KAKKTTVVEMDPRMA 112 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L P +L+I+ D K D F I+N PY I + L+F +S Sbjct: 113 AELSKRVQGKPEQRKLDIMLGDFCKTDLPYF------DVCISNTPYQISSPLVFKLLSHR 166 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQ+E R+ A+ + RLS +K + +S + F P P+V Sbjct: 167 ---PLFRCAILMFQREFALRLIARPGDNLWCRLSANVQLYSKVDHIMKVSRNSFRPPPQV 223 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 S+V+ P P E +T+ F +R KT+R S Sbjct: 224 ESSVVRITPLNPPPAIPFEEFDGLTRIVFSRRNKTVRASF 263 >gi|294495698|ref|YP_003542191.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219] gi|292666697|gb|ADE36546.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219] Length = 229 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 15/233 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +IL Y I + Q+FL++ IL IAE++ V+EIG G GNLT+ L++ A Sbjct: 4 SILKKYGIRG-GSLDQHFLVNEPILDSIAEAADLQIDDVVLEIGGGIGNLTERLVSR-AG 61 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 +VIVIE+D + +L+D N ++II+ DA+KV+ F +++ANLPY+I + Sbjct: 62 RVIVIERDSRLVAVLQDRFHNVSN-IDIIEGDAMKVELPTF------NKVVANLPYSISS 114 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F ++ +E L++Q E R+ S +YGRLSV T + ++ IS Sbjct: 115 PITFRLLNHG-----FEKGILMYQYEFARRMVEAPGSKNYGRLSVDTQYFADVRLLRKIS 169 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR 243 P F P+PKV S V+ +P + ++ + AFG+RRK ++ +L + Sbjct: 170 PSAFTPAPKVWSAVVEVVPRPPAFEVKNEQLFFRVVEAAFGQRRKKMKNALTK 222 >gi|294783118|ref|ZP_06748442.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA] gi|294479996|gb|EFG27773.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA] Length = 264 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 17/269 (6%) Query: 18 KIIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 KK GQNFL + + IL +I E S + ++EIG G G LT +L+ A+K+ + Sbjct: 2 DFKHKKKYGQNFLNNKDEILNQIIEVSNIDENDEILEIGPGQGALTNLLVER-AKKLTCV 60 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ L+ S N ++ D L+VD K+ N +++AN+PY I + ++ Sbjct: 61 EIDKDLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKG--TKVVANIPYYITSPIINK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + ++ QKEVGERI A+ L++ + +A +F I F Sbjct: 118 LIENKE---LIDEAYIMVQKEVGERICAKAG-KERSILTLAVEYYGEADYLFTIPREFFN 173 Query: 197 PSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GEN 248 P P V S I + + + K + AF +RK + +L LG + Sbjct: 174 PVPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 +L+Q I N RAEN+SI+ F + +I Sbjct: 234 ILNQVEISENERAENISIDKFIELIDIFE 262 >gi|50551823|ref|XP_503386.1| YALI0E00770p [Yarrowia lipolytica] gi|52782774|sp|Q6C7H6|DIM1_YARLI RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49649255|emb|CAG78965.1| YALI0E00770p [Yarrowia lipolytica] Length = 317 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 97/230 (42%), Gaps = 12/230 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + + I + S TV+E+G G GNLT +L ARKVI +E D + Sbjct: 34 LGQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 92 Query: 85 ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L P +LEI+ D +K + F I+N PY I + L+F ++ Sbjct: 93 ELTKRVQGKPEQKKLEIMLGDCIKTELPYF------DVCISNTPYQISSPLVFKLLNQPR 146 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ E R+ A+ Y RLSV K + + + F P P V Sbjct: 147 PP---RVSVLMFQHEFAMRLLARPGDSLYCRLSVNVQMWAKVSHVMKVGRGNFRPPPNVE 203 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ P + + F ++ KT+ K +L + Sbjct: 204 SSVVKIEVKNPRPPIDFNEWDGLLRVCFVRKNKTINAGFKTSAVLAVLEK 253 >gi|66475300|ref|XP_627466.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II] gi|32398681|emb|CAD98641.1| dimethyladenosine transferase, probable [Cryptosporidium parvum] gi|46228931|gb|EAK89780.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II] gi|323508725|dbj|BAJ77256.1| cgd6_930 [Cryptosporidium parvum] gi|323509991|dbj|BAJ77888.1| cgd6_930 [Cryptosporidium parvum] Length = 385 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 11/230 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ TV+EIG G GNLT LL L ARKV+ + D + Sbjct: 60 KKKGQHLLKNTGILDKIILAADIKPTDTVLEIGPGTGNLTMRLLPL-ARKVVAFDIDPRM 118 Query: 83 FPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K S N LE+ + DAL+ F F ANLPY I + +F +S Sbjct: 119 VAEVKKRSVNSGFNNLEVREGDALRSSFGDF------DVCTANLPYQISSPFVFKLLSLQ 172 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + L+FQ+E R+ A+ HY RLSV T +K T + ++P F P PKV Sbjct: 173 NK---YRCAVLMFQEEFALRLLAEPGEKHYCRLSVNTKLFSKVTRVCKVAPGSFNPPPKV 229 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 S V+ F P P+ + + F +++KT+R + N+L Sbjct: 230 NSMVVKFEPKKIPVSVNFREWDGLMRICFSRKKKTIRANFNNSSVLNILE 279 >gi|328866316|gb|EGG14701.1| dimethyladenosine transferase [Dictyostelium fasciculatum] Length = 319 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 84/299 (28%), Positives = 123/299 (41%), Gaps = 41/299 (13%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 T+ + K GQ+ L + I+ I E + TV+EIG G GNLT LL + Sbjct: 26 TVARTREFQMNKAYGQHLLKNPLIIDAIVEKAQLKSTDTVLEIGPGTGNLTMKLLESC-K 84 Query: 72 KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 KVI +E D + L S + + L+II D LK D F +AN+PY I Sbjct: 85 KVIAVEVDPRMAAELHKRVSTTPYASHLQIILGDFLKADLPYF------DVCVANVPYQI 138 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + L F ++ P + S L+FQ E R+ A+ Y RLSV T K T + + Sbjct: 139 SSPLTFKLLAHR---PVFRSAVLMFQLEFAARLAARPGDSLYCRLSVNTQLLGKVTKLMN 195 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + + F P PKV S V+ P P P + + F ++ KT+ K + Sbjct: 196 VGKNNFLPPPKVESAVVRIQPFNPPPPINFVEWDGLVKLCFSRKNKTIAAIFKTNSVIEM 255 Query: 250 LHQ-----------AGIET------------------NLRAENLSIEDFCRITNILTDN 279 L+Q A I T + R+ L I +F R+ N +N Sbjct: 256 LYQNYKTVCSLKGIADIGTEEDMKAKVVAILETNKFNDQRSSKLDINEFLRLLNCFHEN 314 >gi|187918451|ref|YP_001884014.1| dimethyladenosine transferase [Borrelia hermsii DAH] gi|119861299|gb|AAX17094.1| dimethyladenosine transferase [Borrelia hermsii DAH] Length = 278 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 148/284 (52%), Gaps = 14/284 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K +L I P+K GQN+L++ +I +K+ ++ + + EIG G G Sbjct: 1 MNINYNSINSIKRMLESKNIAPRKIWGQNYLINEHIREKLVDALEIKENERIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL A + V E D ++ IL + Q N ++I+ D LK ++ NI+ Sbjct: 61 AMTIILLK-KANFLTVFEIDPKYSEILNEQFGQLKN-FKLIKGDFLKTYKQEGQNIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + + QKE+ +R+ A++ + +Y +VL Sbjct: 116 KIFSNLPYNIASKVISMLIEDE----ILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI F+P PKV ST + IP I ++ K+ + F RRK L+ Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKKEI-KNFKAFNKLVRTVFTSRRKKLKN 230 Query: 240 SLKR-LGGENLLHQAGIE--TNLRAENLSIEDFCRITNILTDNQ 280 ++ + +N+L++ ++ + R E +S+++F I+N LT N Sbjct: 231 TIINFIADDNILNEDFLKNFLDKRPEEISVKEFIAISNKLTTNH 274 >gi|171920785|ref|ZP_02931975.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178813|ref|ZP_02964605.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024415|ref|ZP_02997074.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518431|ref|ZP_03003922.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524212|ref|ZP_03004272.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867442|ref|ZP_03079446.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273367|ref|ZP_03205903.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554601|ref|YP_002285056.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550876|ref|ZP_03771825.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551296|ref|ZP_03772242.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226732636|sp|B5ZCB6|RSMA_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171903544|gb|EDT49833.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209443|gb|EDU06486.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018700|gb|EDU56740.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998093|gb|EDU67190.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660052|gb|EDX53432.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660918|gb|EDX54171.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249887|gb|EDY74667.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542102|gb|ACI60331.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379111|gb|EEH01476.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380030|gb|EEH02392.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 281 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 17/282 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +K L +P K MGQNFLL I KI + ++EIG G G +T+ LL Sbjct: 6 IKNKLKQESFVPSKKMGQNFLLSNEIKNKIVNVANISKDDLILEIGPGWGAITE-LLVQK 64 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIA 123 ++ IE D++ + LK II +D L VD +K + I+++A Sbjct: 65 TDTLVAIELDKRLYAHLKTYIKA--PNFHIINNDVLCVDLDKLILDYTNTKKNQKIKVVA 122 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I ++++ I + ++ QKE+ ERI A+ N+ Y +VL K Sbjct: 123 NLPYAISSKIVLKIIQSK----LINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCK 178 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++F ++ F P PKV S VIH N + +E + K + F +RK L+ +L Sbjct: 179 TKILFQVNAKEFHPQPKVQSAVIHLENLHNKVDFDIEQVSKFLRICFLNKRKKLKNNLSN 238 Query: 244 LGGENLLHQAGI----ETNLRAENLSIEDFCRITNILTDNQD 281 + L+++ I + NLRAEN+ + F + N L + + Sbjct: 239 IYDIKLVNEMFIDYNLDMNLRAENIEPKMFLELFNYLNKSNN 280 >gi|224541089|ref|ZP_03681628.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM 15897] gi|224526013|gb|EEF95118.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM 15897] Length = 272 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 136/278 (48%), Gaps = 19/278 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K + + IL+ + + P K GQNFL+D I++ IA+ + VIEIG G G Sbjct: 1 MENIAKKSNTEFILNTFNLKPSKKYGQNFLVDPGIIQSIADHASLDKETAVIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISS 117 LT+ L + A KV+ E D++ +L H N +EII D +K D E+ Sbjct: 61 LTEQL-SNKAGKVLCFEIDERLKEVLSFSLEGHDN-VEIIFQDFMKADLEEACKKLKNYK 118 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 I ++ NLPY I ++++ +S+ T L + QKEV ++ +++ SP L ++ Sbjct: 119 DICVVTNLPYYITSKIITKIVSSSTP---INRLVAMVQKEVALKLCSEEKSP----LKMM 171 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + ++ HVF P+P V S VI + L + + ++ +RKTL Sbjct: 172 IDYVGDVQYELNVPRHVFMPAPHVDSAVISIHKER----VISQELIDLIEASYTAKRKTL 227 Query: 238 RQSLKRLG---GENLLHQAGIETNLRAENLSIEDFCRI 272 +LK L + LL GI N RAE L+I+D+ RI Sbjct: 228 YNNLKSLYHDQTKELLESCGIPANKRAEELNIDDYIRI 265 >gi|330813911|ref|YP_004358150.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. IMCC9063] gi|327487006|gb|AEA81411.1| dimethyladenosine transferase [Candidatus Pelagibacter sp. IMCC9063] Length = 258 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 152/262 (58%), Gaps = 8/262 (3%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL + I+ +I S+ V E+G G G L++ ++ + +K + +E D+ Sbjct: 1 MKKKFGQNFLNNQTIIDQIITSANITKDSIVYEVGPGDGALSREIVKINPKKYLAVEIDK 60 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L D+ ++ + II +DAL+ D F S + II+NLPYNI +LL WI+ Sbjct: 61 GLIQKLDDVFAKKEHW--IINEDALQFDETSVF--SKNVTIISNLPYNISLKLLLKWINQ 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P+++ + L+FQKEVGERI +++NS YGR+S++ + + + DI+ + FFP PK Sbjct: 117 YITNPWFDQMILMFQKEVGERILSEENSKKYGRISLIVSAFFQCSKILDINKNDFFPVPK 176 Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-- 256 V S +I F+P I + L+ +++ F RRK L+ +K+L E ++ + ++ Sbjct: 177 VDSVMIKFVPLKKTIINNKNIHKLELLSKTLFANRRKKLKNKIKQLFDERVIEENKLDQY 236 Query: 257 TNLRAENLSIEDFCRITNILTD 278 +LRAEN+S E+F ++T +L D Sbjct: 237 FDLRAENISKENFYQLTKLLKD 258 >gi|332376340|gb|AEE63310.1| unknown [Dendroctonus ponderosae] Length = 306 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 17/277 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + ++ I K GQ+ L + ++ + E S TV+EIG G GN+T L Sbjct: 8 KKSRVHQEVAKQGITFNKQFGQHILKNPMVITSMVEKSAIRSTDTVLEIGPGTGNMTVRL 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+KV+ E D + L+ ++LEI+ D LK + FFNI +A Sbjct: 68 LE-KAKKVVACEIDTRLVAELQKRVQGTHLQSKLEILVGDVLKRELP-FFNIC-----VA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PY I + L+F + PF+ ++FQ+E +R+ A+ Y RLSV T + Sbjct: 121 NIPYQISSPLVFKLL---LHRPFFRCAVIMFQREFAQRLVAKPGDKLYCRLSVNTQLLAR 177 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 M+ + + F P PKV S+V+ P P P +T+ AF ++ +TL + K+ Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRIEPRNPPPPIPYIEWDGLTRIAFTRKNRTLGSAFKQ 237 Query: 244 LGGENLLHQA-GIETNLRAENLSIEDF---CRITNIL 276 L + + +L EN+ EDF ++ IL Sbjct: 238 SAVLAALDKNYKLHCSLHNENV-PEDFNLKAKLEEIL 273 >gi|229819472|ref|YP_002880998.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333] gi|229565385|gb|ACQ79236.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333] Length = 324 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 18/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + I P K +GQNF+ D +++I ++G G V+E+G G G+LT LL Sbjct: 31 PSDVRALAAGLGIRPTKTLGQNFVTDAGTVRRIVRAAGVTAGDVVVEVGPGLGSLTLGLL 90 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V+ +E D L ++H +RL +I DAL V P ++ Sbjct: 91 EAGA-TVVAVEIDPVLAGALPGTIAEHAPDVADRLTVITADALDVTE----LPGRPSAMV 145 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + P + ++ Q EV +R+ A S YG SV W Sbjct: 146 ANLPYNVAVPVLLTMLER---FPELARVLVMVQAEVADRLVAPPGSRTYGVPSVKAAWYA 202 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSL 241 A I VF+P P V S ++ P P L + AF +RRKTLR +L Sbjct: 203 AAARAGSIGRTVFWPVPNVDSALVRLERRPAPAPEDLRAEVFGCVDAAFAQRRKTLRAAL 262 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 G E++L AG++ LR E L +E F R+ ++ Sbjct: 263 AGWAGSPSDAESILRAAGVDPTLRGERLDVEAFARVASV 301 >gi|302820073|ref|XP_002991705.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii] gi|300140554|gb|EFJ07276.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii] Length = 344 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 122/282 (43%), Gaps = 20/282 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 L PK+++GQN++++ NI +I ++ G V+EIG G G LT LL GA Sbjct: 54 EALKSKNRRPKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY 113 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------DFEKFFNISSPIRIIA 123 VI +EKD ++ + +P + QDD LK E + S +++++ Sbjct: 114 -VIAVEKDPDMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVS 172 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE-VGERITAQKNSPHYGRLSVLTGWRT 182 NLP+NI T ++ + + ++ LL Q E I Y +S+ + + Sbjct: 173 NLPFNITTDVVKKLL---PMGDLFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFS 229 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQ 239 + F + FFP P V V+ F + P ++ + AF +RK LR Sbjct: 230 EMEYKFKVDRLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRT 289 Query: 240 SLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL+ L EN L G+ R LS F ++ N L Sbjct: 290 SLRHLYSSSEVENALCSIGVIETARPHQLSFSQFVKLHNTLA 331 >gi|296813149|ref|XP_002846912.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae CBS 113480] gi|238842168|gb|EEQ31830.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae CBS 113480] Length = 376 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 12/233 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + + + I + + TV+E+G G GNLT +L A Sbjct: 25 KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L P RLE++ D +K + F I+N PY Sbjct: 84 KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ P L+FQ+E R+ A+ Y RLSV K + Sbjct: 138 ISSPLTFKLLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P P V S+V+ +P + E + + AF ++ KTLR S Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247 >gi|203284494|ref|YP_002222234.1| dimethyladenosine transferase [Borrelia duttonii Ly] gi|201083937|gb|ACH93528.1| dimethyladenosine transferase [Borrelia duttonii Ly] Length = 274 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 142/281 (50%), Gaps = 14/281 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K +L + I P+K GQN+L++ NI +KI ++ + EIG G G Sbjct: 1 MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIREKIIDALDIKKNEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T LL A + E D ++ IL + Q N ++I+ D LK ++ +I+ Sbjct: 61 AMTATLL-NKANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKTSIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I++NLPYNI ++++ I + + QKE+ +R+ A++ + +Y ++L Sbjct: 116 KIVSNLPYNIASKVISTLIEDE----ILTHMVFTVQKELADRMIAKEGNKNYSSFTILVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI F+P PKV ST I P I + K+ + F RRK L+ Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLTPCKGNI-KNFQIFNKLIRTVFTSRRKKLKN 230 Query: 240 SLKR-LGGENLLHQAGIE--TNLRAENLSIEDFCRITNILT 277 ++ + EN+L + ++ + R E +S+++F I N LT Sbjct: 231 TIINFIKNENILKEDFLKNFLDKRPEEISVKEFITIANKLT 271 >gi|302534918|ref|ZP_07287260.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces sp. C] gi|302443813|gb|EFL15629.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces sp. C] Length = 285 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 18/269 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + + P K GQNF++D N +++I ++ V+E+G G G+LT LL Sbjct: 22 PADIRELAAVLGVRPTKQKGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALL 81 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A +V +E D L + +R ++ DA+ V +P ++ Sbjct: 82 E-AADRVTAVEIDDILAAALPATIEARMPHKKDRFALVHSDAMLVTE---LPGPAPTALV 137 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + P E ++ Q EV +R+ A+ + YG SV W Sbjct: 138 ANLPYNVAVPVLLTMLDR---FPSIERTLVMVQSEVADRLAARPGNKVYGVPSVKAAWYA 194 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238 I +VF+P+P V S ++ + P+ + + AF +RRK LR Sbjct: 195 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPVKTTASKAEVFAVVDAAFAQRRKGLRAA 254 Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENL 264 + E L AG+ R E+L Sbjct: 255 LAGWAGSAAAAEQALVAAGVSPLARGESL 283 >gi|326479389|gb|EGE03399.1| dimethyladenosine transferase dimethyltransferase [Trichophyton equinum CBS 127.97] Length = 378 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 12/233 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + + + I + + TV+E+G G GNLT +L A Sbjct: 25 KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L P RLE++ D +K + F I+N PY Sbjct: 84 KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ + P L+FQ+E R+ A+ Y RLSV K + Sbjct: 138 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P P V S+V+ +P + + + + AF ++ KTLR S Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247 >gi|15679326|ref|NP_276443.1| dimethyladenosine transferase [Methanothermobacter thermautotrophicus str. Delta H] gi|27151554|sp|O27381|RSMA_METTH RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|2622432|gb|AAB85804.1| dimethyladenosine transferase [Methanothermobacter thermautotrophicus str. Delta H] Length = 273 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ + +L Y + ++ +GQN+L+D ++I E + + V+EIG G G LT Sbjct: 1 MSGLYTETREVLRKYGVRLRRSLGQNYLIDEVKRQRILEYADLREDDRVLEIGPGIGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + L A V IE D IL D + +++I DAL+VDF +F +++ Sbjct: 61 LPMAEL-AGHVTAIESDPLIAAILMDRLQV--DNVDVIVGDALRVDFPEF------NKVV 111 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY I + + F + D +E L++QKE R+ A+ + Y RLSV+ + Sbjct: 112 SNLPYQISSPITFRLLEHD-----FELAVLMYQKEFARRMVAEPGTREYSRLSVMVHFLA 166 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR----KTLR 238 + ++ + P FFP P+V S V+ P P L+ + + F R+ K+LR Sbjct: 167 EVEIVDYLKPGCFFPRPRVESAVVTLKPTGFRAPA---FLEDVCRALFQHRKKKTSKSLR 223 Query: 239 QSLKRLGGENLLHQA--GIETNL---RAENLSIEDFCRITNILTD 278 +S + + ++ G+ + R L ED I + D Sbjct: 224 ESFHEIRTDLSFNEVLRGLPPEILEKRVFQLRPEDILEIAEHIED 268 >gi|326471294|gb|EGD95303.1| dimethyladenosine transferase dimethyltransferase [Trichophyton tonsurans CBS 112818] Length = 378 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 12/233 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + + + I + + TV+E+G G GNLT +L A Sbjct: 25 KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L P RLE++ D +K + F I+N PY Sbjct: 84 KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ + P L+FQ+E R+ A+ Y RLSV K + Sbjct: 138 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P P V S+V+ +P + + + + AF ++ KTLR S Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247 >gi|167957599|ref|ZP_02544673.1| dimethyladenosine transferase [candidate division TM7 single-cell isolate TM7c] Length = 260 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 133/269 (49%), Gaps = 23/269 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK++GQ++L D IL IA+ + T++EIG G G LT +LL+ A++VI IE D Sbjct: 5 KKHLGQHWLRDRFILNHIADCADINKNDTIVEIGPGLGTLTSILLSR-AKEVISIEFDAD 63 Query: 82 FFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + Q P + L +I D L+ D + N+ +++ANLPY I +++ + ++ Sbjct: 64 LA---RKLPGQFPGKDLTVINQDILEFDTD---NLPKKYKLVANLPYYITAKVIHKFTTS 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + LL QKEV ER+ AQ LSV + ++ + F P PK Sbjct: 118 KNRPS---KMVLLVQKEVAERVVAQPG--RMSLLSVSSQLYANVSLGDVVPACYFTPPPK 172 Query: 201 VTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RLGGENLLH 251 V S V+ P L P + L +I + F RRK LR SL + E LL Sbjct: 173 VDSQVLIFDMIDPKL-PSDISEKELFRIVKAGFSSRRKKLRSSLSGGLNINKNSVETLLM 231 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280 Q GI + RAE+LS+ED+ I + + Sbjct: 232 QTGISPDHRAEDLSVEDWKVIAKNFYNCK 260 >gi|219115097|ref|XP_002178344.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410079|gb|EEC50009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 322 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P +GQ+FL + ++ I + +G V+EIG G GN+T +L A+KV+ +E Sbjct: 37 ISPNTSLGQHFLKNPAVISSIIDKAGLKATDVVLEIGPGTGNMTVPMLQR-AKKVVALEF 95 Query: 79 DQQFF-PILKDISS-QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +LK ++L++IQ DA+K + F +IANLPY I ++++F Sbjct: 96 DSRMVREVLKRTEGTDLAHKLQVIQGDAMKTAWPFF------DCMIANLPYQISSQVVFK 149 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + L+FQ+E R++A+ Y RLSV T K + + F Sbjct: 150 LLSHR---PMFRCAVLMFQEEFALRLSARPGEALYCRLSVNTQLLAKVDQLLKVGKQNFR 206 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P PKV S V+ P P + + F ++ KTLR L LL Sbjct: 207 PPPKVESRVVRIELKNPPPPVNFTEWDGMIRLLFNRKNKTLRSVLNTKSVMKLLE 261 >gi|240047162|ref|YP_002960550.1| dimethyladenosine transferase [Mycoplasma conjunctivae HRC/581] gi|239984734|emb|CAT04708.1| Dimethyladenosine transferase [Mycoplasma conjunctivae] Length = 260 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K + KK GQNFL D NI+KKI S + VIEIG G G LTQ ++ + + E Sbjct: 3 KFVFKKKYGQNFLKDENIVKKIVNSVDITNKE-VIEIGPGGGALTQEIVKKCS-FLRAYE 60 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D LK S P +EII +D L + + F S+ ++ANLPY I + ++F Sbjct: 61 IDADLIENLKKKFSSSP--VEIINEDFLDTNLDFF---STKQIVLANLPYYITSNIIFKI 115 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 +S + + ++ Q EV +RI A+ N+ Y +LS+ + + I P F P Sbjct: 116 LS---HINKFSEIVIMVQDEVADRIVAKVNTKDYSKLSLSCQYIANVEKILKIPPSAFIP 172 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---- 253 P V S V+ F N + +++F +RKTL + + + Q Sbjct: 173 QPSVNSAVVVFRVKENIDQEKFNNFLNFVKKSFAMKRKTLFNNFLTFIERDKIKQIYSLF 232 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 ++ N+R + +S++ + I L Sbjct: 233 KLDFNVRPQQISLDLYNEIFEFLYQK 258 >gi|319789994|ref|YP_004151627.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1] gi|317114496|gb|ADU96986.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1] Length = 250 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 15/261 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQ+FL D N++++IA++ V+EIG G G LT+ LL + + IE Sbjct: 1 MRLKKRYGQHFLKDRNVIRRIADALPITSDDVVVEIGPGGGALTEELLARNPKALYAIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + LK+ +R+ + DA DF + ++ NLPYN+ T ++ N + Sbjct: 61 DPDWVDYLKERFK---DRITVFNADATTFDFSQL---GRGLKFFGNLPYNVSTAIIRNLL 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV R+TA +G L L +FD+ P F P Sbjct: 115 NHRSA---FSGGVFMVQKEVAGRLTA-TGGKEFGYLPALLQRFFTVKPLFDVPPGAFKPP 170 Query: 199 PKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PKV STV+ P P E + + AF RRK L++++ G L Sbjct: 171 PKVWSTVVKLEPK-EPELSDEELLPFENFLKMAFSHRRKKLKKNIPVKG--ELPPHLQPL 227 Query: 257 TNLRAENLSIEDFCRITNILT 277 RAE L+ E + L Sbjct: 228 LEKRAEELTGEQLLELFRALK 248 >gi|256810093|ref|YP_003127462.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86] gi|256793293|gb|ACV23962.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86] Length = 268 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 25/273 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQ FL+D N + K E++ V+EIG G G LT+ L A+KV +IE Sbjct: 2 FKPKKKLGQCFLIDKNFVNKAVEAANLTKDDVVLEIGLGKGILTEELAK-NAKKVYIIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P + ++ N +EII DA+KVD +++ANLPY I + + F + Sbjct: 61 DKNLEPYANRLKEKY-NNIEIIWGDAVKVDLSNL----DFNKVVANLPYQISSPITFKLL 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ L++Q E +R+ A++ + YGRLSV R ++ + P+ F P Sbjct: 116 KKG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIIAKVPPNAFSPK 170 Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSL---------KRLGGEN 248 PKV S ++ P+ N + + F R K++R++L + + Sbjct: 171 PKVFSAIVKIKPNKNKYHIENEDFFDNFLRAIFQHRNKSVRRALIDSSKELNYSKNEMKK 230 Query: 249 LLHQAGIE----TNLRAENLSIEDFCRITNILT 277 +L + E N + LS+ + +++N L Sbjct: 231 ILEEFSKEHENLMNEKVFKLSVGEIVKLSNELY 263 >gi|321479018|gb|EFX89974.1| hypothetical protein DAPPUDRAFT_205158 [Daphnia pulex] Length = 308 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 19/272 (6%) Query: 6 KSHSLKTILSH--YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 K K + S + +GQ+ L + I++ + E + TV+EIG G GN+T Sbjct: 8 KKSGRKEVSSKEVQGLRFNTSLGQHILKNPKIVESMVEKAALRSTDTVLEIGPGTGNMTV 67 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 LL +++V+ E D + L+ + +L I+ D LK + FF++ Sbjct: 68 KLLER-SKRVVACEVDPRMVAELQKRVLGTHLQPKLHIMVGDVLKTELP-FFDVC----- 120 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I + +F + P + L+FQ+E ER+ A+ Y RLSV T Sbjct: 121 VANLPYQISSPFVFKLL---LHRPMFRCALLMFQREFAERLIAKPGDKLYCRLSVNTQLL 177 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 K + + + F P PKV S+V+ P P + + F ++ +T+ Sbjct: 178 AKVDHVLKVGKNNFRPPPKVESSVVRIEPKNPAPPINFREWDGLVRIGFLRKNQTMSALF 237 Query: 242 KRLGGENLLHQ-----AGIETNLRAENLSIED 268 K +L + A + + EN S++D Sbjct: 238 KHTSVVTVLEKNYRTHASLHNIVIPENFSLKD 269 >gi|302818711|ref|XP_002991028.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii] gi|300141122|gb|EFJ07836.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii] Length = 344 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 121/282 (42%), Gaps = 20/282 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 L PK+++GQN++++ NI +I ++ G V+EIG G G LT LL GA Sbjct: 54 EALKSKNRRPKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY 113 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------DFEKFFNISSPIRIIA 123 VI +EKD ++ + +P + QDD LK E + S +++++ Sbjct: 114 -VIAVEKDPDMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVS 172 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE-VGERITAQKNSPHYGRLSVLTGWRT 182 NLP+NI T ++ + + ++ LL Q E I Y +S+ + + Sbjct: 173 NLPFNITTDVVKKLL---PMGDLFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFS 229 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQ 239 + F + FFP P V V+ F + P ++ + AF +RK LR Sbjct: 230 EMEYKFKVDRLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRT 289 Query: 240 SLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 SL+ L EN L G+ R LS F + N L Sbjct: 290 SLRHLYSSSEVENALCSIGVVETARPHQLSFSQFVNLHNTLA 331 >gi|34762816|ref|ZP_00143802.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887518|gb|EAA24602.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 264 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL +I E S + ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNRIIEVSNINENDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N + +I D L+VD K+ N S +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSSKENYI-LIMGDILEVDLRKYINKS--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + +A +F I F P Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 +P V S I + + K + AF +RK + +L LG + + Sbjct: 175 TPNVDSAFISIKFYKDDRYKNKISESLFFKYVKAAFSNKRKNIVNNLVTLGYSKNKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264 >gi|124486386|ref|YP_001031002.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z] gi|124363927|gb|ABN07735.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z] Length = 258 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 127/263 (48%), Gaps = 24/263 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D + + IA+S G TV+E+G G G LT LL GA V +E D P L Sbjct: 7 QHFLIDTDAVDFIADSIPIQ-GRTVLEVGPGGGVLTAALLERGAN-VRAVELDGTLLPNL 64 Query: 87 KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + +L I + DA +V + +IANLPY+I +++ F + Sbjct: 65 EQRFEEELSTGQLTITRGDASRVPLPAY------DLVIANLPYSISSKITFRLLETG--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 +E+ L++Q E +R+ + YGRLSV+ ++ + P F P P+V S Sbjct: 116 --FETAVLMYQWEFAKRMVSPPGDGEYGRLSVMVQTYADVELILKLPPQAFNPPPEVDSA 173 Query: 205 VIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSL---KRLGGENLLHQA-GIETN- 258 V+ IPH P+ + + +E F RRKT++ L K + GE ++ + G N Sbjct: 174 VVKIIPHEPPVKILNRDVHAVLVRELFSHRRKTIQNGLKGMKSIYGEEVMTKLIGSLPND 233 Query: 259 ---LRAENLSIEDFCRITNILTD 278 R E LSI DF + N LT+ Sbjct: 234 LLGKRPEMLSIVDFIELANRLTN 256 >gi|260818308|ref|XP_002604325.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae] gi|229289651|gb|EEN60336.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae] Length = 1177 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 14/219 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 +++ I+ Y++ K + QNFL D N+ KI +S+G+L+G V E+G GPG +T+ +L Sbjct: 25 TIRDIVKLYRLNAAKQLSQNFLFDTNLTDKIVKSAGNLEGAYVCEVGPGPGGITRSILKA 84 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119 GA KV+V+E D++F L+ +S+ P R+EI+ D L + K + Sbjct: 85 GAAKVVVVELDKRFNAGLRLLSAAAPGRVEIVNADILTYNLAKALPLDLAVPWEGDPPNV 144 Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 II NLP+N+ T L+ W+ A + LTL FQKEV ERI A S RL Sbjct: 145 HIIGNLPFNVSTPLIIRWLEALALRTGPFVYGRTQLTLTFQKEVCERICAPPRSSQRSRL 204 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 S+++ + + F I F P P V V+HF P Sbjct: 205 SIMSQYLCRVKHCFRIPGKCFVPKPDVDVGVVHFTPLDR 243 >gi|327303040|ref|XP_003236212.1| dimethyladenosine transferase dimethyltransferase [Trichophyton rubrum CBS 118892] gi|326461554|gb|EGD87007.1| dimethyladenosine transferase dimethyltransferase [Trichophyton rubrum CBS 118892] Length = 377 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 12/233 (5%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + + + I + + TV+E+G G GNLT +L A Sbjct: 25 KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L P RLE++ D +K + F I+N PY Sbjct: 84 KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ + P L+FQ+E R+ A+ Y RLSV K + Sbjct: 138 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P P V S+V+ +P + + + + AF ++ KTLR S Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247 >gi|4572637|emb|CAA92585.1| dimethylase [Schizosaccharomyces pombe] Length = 315 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + + + I + + TV+E+G G GNLT +L ARKVI +E Sbjct: 22 FKFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEM 80 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +L+++ D +K D F ++N PY I + L+F Sbjct: 81 DPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF------DVCVSNTPYQISSPLVFK 134 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L+FQ+E R+ A+ P Y RL + + + F Sbjct: 135 LLQQRPAP---RGAILMFQREFALRLVARPGDPLYCRLPANVQMWAHVKHIMKVGKNNFR 191 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P P V S+V+ P P P E + + F ++ KT+ K ++ Sbjct: 192 PPPLVESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFKTSSIIEMVE 246 >gi|294784979|ref|ZP_06750267.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27] gi|294486693|gb|EFG34055.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27] Length = 264 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL +I E S D ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N +I D L++D ++ N +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSSKEN-YTLIMGDVLEIDLRRYINQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + +A +F I F P Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISESLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264 >gi|227494872|ref|ZP_03925188.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM 15436] gi|226831324|gb|EEH63707.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM 15436] Length = 310 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 32/306 (10%) Query: 1 MTMNNKSHS--LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 MT N ++ I + I P K +GQNF+ D ++KI + G V+EIG G Sbjct: 4 MTEVNLLTPVNVREICAALNIQPTKTLGQNFVHDGGTVRKIIAAGRVTAGEHVLEIGPGL 63 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKVDFEKFFNI 115 G+LT LL G R V +E D L + + L ++ D L+V + N Sbjct: 64 GSLTLGLLEAGCR-VTAVEIDPVLATALPSTVAGQGSADLPLRVLLKDGLQVRSDAELNE 122 Query: 116 SS-----------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 + P R++ANLPYN+ L+ N++ P + + ++ Q EV +R++A Sbjct: 123 APLINGEIVEWEAPTRLVANLPYNVAVPLVLNFLE---HFPSIQEILVMVQTEVAQRLSA 179 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-------PIPC 217 YG SV W A M IS +F+P P V S+++ + Sbjct: 180 TPGGRIYGVPSVKAAWYGHAEMAGTISRQIFWPVPNVDSSLVRITRYAAGEGPELGEPAV 239 Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 E++ K+ AF +RRKTLR +LK G E LL +AGI++ R E L I +F + Sbjct: 240 SKEAVFKLVDAAFAQRRKTLRAALKNWAGNATLAEELLAKAGIDSVRRGETLDINEFVAL 299 Query: 273 TNILTD 278 T+ Sbjct: 300 GRAATE 305 >gi|85057928|ref|YP_456844.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] gi|122064281|sp|Q2NIH8|RSMA_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|84790033|gb|ABC65765.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 268 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 139/262 (53%), Gaps = 19/262 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D+N+L KI + V+EIG G G LT++++ A+ V+ E D Sbjct: 6 KKKYGQNFLTDVNLLNKIVTKASIT-DKNVLEIGPGKGALTKIIVPQ-AKNVLAYEIDAT 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 P L ++ N + II DD LK DF+ +F+ +S + +I NLPY I + +LF Sbjct: 64 LKPFLN---FENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I P T++ QKEVG R+ AQ N+ +Y LSV+ + + ++ H+FFP Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENL---LH 251 +PKV S VI + N +P L+ K + +F ++RKTL +L L E + Sbjct: 177 TPKVDSIVIKLTKNNNILPTFLKQFIKFVKNSFKQKRKTLLNNLSCQFLLSKETIIPFFL 236 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 Q I +RAE +++E F ++T Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258 >gi|261415778|ref|YP_003249461.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372234|gb|ACX74979.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326044|gb|ADL25245.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 261 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 11/260 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D+ IA + G V+EIG G G LT+ LL G ++ +E D+Q Sbjct: 6 RRKFGQNFL-DVETATAIAGDLPAEAGEFVLEIGPGHGALTEHLLNRG-LELTAVEIDEQ 63 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L + + N I+ D LK D + F + + + NLPYN+ T ++ + Sbjct: 64 CVEVLNEKFKDYKN-FNIVNIDFLKFDLQAFLDAHAKPWVTGNLPYNVSTAIIAGLMPRL 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + Q EV ERI A+ S +YG LSVL ++ I P F P P V Sbjct: 123 HLTKGFMGMV---QLEVAERICAEPCSSNYGSLSVLVSAFANTQILRKIGPEHFTPKPNV 179 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIET 257 S + P + I + + AF ++RKTL S R + + T Sbjct: 180 DSATMLLTPREDAI-QAPDGFFDFVRTAFTQKRKTLANSFGRNYDKKKIQATIELLDWPT 238 Query: 258 NLRAENLSIEDFCRITNILT 277 +RAE LS E F Sbjct: 239 TIRAEELSPEQFLNFYKAFK 258 >gi|47459399|ref|YP_016261.1| dimethyladenosine transferase [Mycoplasma mobile 163K] gi|62900531|sp|Q6KH80|RSMA_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|47458729|gb|AAT28050.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma mobile 163K] Length = 254 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 123/262 (46%), Gaps = 15/262 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK +GQNFL D NI++KI L+ V+EIG G G LT LL ++ V+ E Sbjct: 3 HNFKKSLGQNFLQDKNIIEKIVNFI-PLENEDVLEIGPGQGALTN-LLVKKSKNVLAYEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ P LK+ + +D LK + + IIAN+PY I + +LF Sbjct: 61 DKELIPFLKEKIKAK--NFTLKHEDFLKSE----IDFQDKKIIIANIPYFITSDILFKIF 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 F+ ++ QKE+ +++ A+ N +YG+LSV + + + ++ F+P Sbjct: 115 ENHK---FFTKALIMVQKEIADKLIAKANDSNYGKLSVSSQFFANIKKVINVPRTCFYPQ 171 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAG 254 P V S V++F + +E + F ++RK L +LK + +++L + Sbjct: 172 PNVDSAVVYFEFKNDIENIDIEKFLVFIKTCFSQQRKKLSNNLKNVYDLEKIKSVLKKLN 231 Query: 255 IETNLRAENLSIEDFCRITNIL 276 + +R + + + + + L Sbjct: 232 LSFEVRPQQIDLNVYKILFYEL 253 >gi|313678187|ref|YP_004055927.1| dimethyladenosine transferase [Mycoplasma bovis PG45] gi|312950337|gb|ADR24932.1| dimethyladenosine transferase [Mycoplasma bovis PG45] Length = 262 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 76/264 (28%), Positives = 124/264 (46%), Gaps = 14/264 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK GQNFL + +++KKI + +G ++EIG G G LT+ L+ ++ V E D Sbjct: 9 RAKKKFGQNFLNNADVVKKIIDIINP-EGKKILEIGPGTGALTKFLVDKCSKYV-AFEID 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L + + + E+I D L+ D N + ++ N+PY I + ++ I Sbjct: 67 TDMIAFLNENNYFNLGSTELIHKDFLEAD----LNQYACFEVVGNIPYYITSDIILKIID 122 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ TLL QKEV +RI A NSP Y +LS+ + K + + F P P Sbjct: 123 NR---FLFKRATLLVQKEVADRIIATPNSPDYSKLSITCQYVAKVKKELFVGRNNFTPVP 179 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GI 255 KV S ++ F + N +LK + F RRK L SLK+ + + A I Sbjct: 180 KVDSAIVTFDFYQNKDD-NYSNLKPFFKLCFSARRKKLMWSLKQTYNQEKVQNAYKTLNI 238 Query: 256 ETNLRAENLSIEDFCRITNILTDN 279 + N+R + L+++ ++ L N Sbjct: 239 DENIRIQQLNLDTIIKLYEQLESN 262 >gi|257126070|ref|YP_003164184.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b] gi|257050009|gb|ACV39193.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b] Length = 287 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 18/278 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + KK GQNFL D N+ I + + + V+EIG G G LT+ L+ ++ + Sbjct: 15 IENENHKAKKKYGQNFLNDSNLSDDILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFL 73 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYN 128 E D P L + N ++I D ++VD ++FF ++++AN+PY Sbjct: 74 TAFEIDDDLIPFLNKKFQKKEN-FKLIHQDFMEVDLKEFFENEENKSKKNVKVVANIPYY 132 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + ++ + + + L+ QKEV ERI +Q +S + L+ + + +F Sbjct: 133 ITSPIINKLLEYREN---IDEIYLMVQKEVAERIASQPHSKNMSLLTHAVQFYAETEYLF 189 Query: 189 DISPHVFFPSPKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + F P PKV S + E K +EAF +RK++ +L +LG Sbjct: 190 TVPKEKFDPVPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLMKLG 249 Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 N L + G R E S+++F IL Sbjct: 250 FSKDVVGNALEKVGKTRLARTEEFSVQEFIDFIGILES 287 >gi|91790683|ref|YP_551635.1| dimethyladenosine transferase [Polaromonas sp. JS666] gi|118600882|sp|Q121Q5|RSMA_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91699908|gb|ABE46737.1| dimethyladenosine transferase [Polaromonas sp. JS666] Length = 330 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 81/312 (25%), Positives = 129/312 (41%), Gaps = 56/312 (17%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVI 76 K IP+K GQ+FL D I++ I ++ G V+EIG G LTQ L+ G VI + Sbjct: 19 KHIPRKRFGQHFLTDQGIIEGIVQAIAPRAGQAVVEIGPGLAALTQPLVERLGHLTVIEL 78 Query: 77 EKD-----------------------QQFFPILKD---ISSQHPNRLEIIQD-------- 102 ++D +Q L+ S+ P + Sbjct: 79 DRDLAQQLRAHPQLTVVESDVLKVDFRQLAERLQHGPVRSAGLPQAETAPKGLEPAGSSS 138 Query: 103 -----DALKVDFEKFFNISS------------PIRIIANLPYNIGTRLLFNWISADTWPP 145 D L+ +R++ NLPYNI T +LF+ + A Sbjct: 139 QQGPRDWLRQTAGAAAPSRGSAVHEVTSVGAHKLRVVGNLPYNISTPILFHLLDA---VD 195 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 E + QKEV +R+ A ++ YGRLSV+ WR + + P F P P+V S V Sbjct: 196 VIEDQHFMLQKEVIDRMVAAPSTSDYGRLSVMLQWRYAMENVLFVPPQSFDPPPRVDSAV 255 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 + +PH +P ++ L ++ Q AF +RRK LR +L + A + RAE + Sbjct: 256 VRMVPHAHPAALDVKLLSQLVQVAFSQRRKLLRHTLGQWLTARGFPGA-FDVQRRAEEVP 314 Query: 266 IEDFCRITNILT 277 + ++ + + Sbjct: 315 VAEYVALAQQVA 326 >gi|312879958|ref|ZP_07739758.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260] gi|310783249|gb|EFQ23647.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260] Length = 287 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 8/255 (3%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL+D +++ + ++ V+E+G G G LT+ LL RKV +E D++ P Sbjct: 14 GQNFLVDPKVVRDLVAAAAPDPDTVVLEVGPGKGILTEALLGSPCRKVFSLEIDRRLEPF 73 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L+ + +++ + ++ DAL+V F+ P + ANLPY+I T L++ ++ + P Sbjct: 74 LEPLFARYAPKGTLLWGDALRVTFQDLL-PEIPHLVAANLPYHITTPLIWKFLE-ELTPR 131 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 +L L+ Q+E R+ AQ+ S L + + +SP F P P+V ST+ Sbjct: 132 GTRTLVLMVQREAAWRLMAQEGSRDRTPLGITLQRMGTLRKVRAVSPGAFRPIPQVASTI 191 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------LKRLGGENLLHQAGIETNL 259 + P S + + +F +RRKTL + L R E L + Sbjct: 192 LEIRIQREPDLANDPSWRAFVRGSFAQRRKTLVNNWIAGWRLPREEAEGRLAPLALPRTA 251 Query: 260 RAENLSIEDFCRITN 274 R E L++ + R+ Sbjct: 252 RPEELTLPQWIRLAQ 266 >gi|288575051|ref|ZP_06393408.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570792|gb|EFC92349.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 268 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 10/264 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PK +GQNFL++ +I+++ E + ++EIG G G LT+ +L+ + IE Sbjct: 7 FTPKTSLGQNFLINRDIVRRTVERADITKKDVILEIGPGQGVLTREILSSPCSHLHSIEI 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ P LKDI + +R + D +K + + + P +++AN+PY++ T L+++ + Sbjct: 67 DRRLEPFLKDI--EEDDRFSLHWGDGVKFPYGELRPV--PSKVVANIPYHVTTPLIWSIL 122 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + L+ QKE +R+ AQ + L + A +SP F P Sbjct: 123 E-KLAPSGLSYMILMVQKEAADRLVAQACTKERYPLGITLAAMGSAKTYMKVSPGSFRPI 181 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQA 253 PKV+S ++ +K+ + F +RRK L +L LG + +L+ ++ Sbjct: 182 PKVSSALVELTIERRRDLPSDNLWRKVLKAGFSQRRKKLANNLVSLGIKKEEILDLMDRS 241 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI + RAE LS+ + L Sbjct: 242 GIPSEARAETLSVYQWLEFVESLR 265 >gi|296109078|ref|YP_003616027.1| dimethyladenosine transferase [Methanocaldococcus infernus ME] gi|295433892|gb|ADG13063.1| dimethyladenosine transferase [Methanocaldococcus infernus ME] Length = 269 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 21/270 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK +GQ+FL+D N + K E + + V+EIG G G LT+ L A+KV VIE Sbjct: 2 HKYKKSLGQHFLVDKNFVYKAIEGANLKEDDKVLEIGLGKGILTEELCKR-AKKVYVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ + +++ N L II DDALKV+ ++ +++ANLPY I + + F + Sbjct: 61 DKNLESFANSLINKYKN-LNIIWDDALKVNLKEI----DYNKVVANLPYQISSPITFKLL 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ L++Q E +R+ A++ + YGRLSV + A ++ + P F+P Sbjct: 116 DRG-----FDLSVLMYQLEFAKRMIAKEGTKDYGRLSVSLQAQANAEILCKVPPSAFYPR 170 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS---------LKRLGGENL 249 PKV S ++ PH E + + AF R K L+++ L R + + Sbjct: 171 PKVWSALVKIEPHNKYKILNKEFFNNLVRGAFQHRNKFLKKALILSSSELGLSREELKKI 230 Query: 250 LHQA-GIETNLRAENLSIEDFCRITNILTD 278 L + +S+E+F ++N L + Sbjct: 231 LEDIEDKTLEKKVFKVSVEEFVNLSNKLYE 260 >gi|302682452|ref|XP_003030907.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8] gi|300104599|gb|EFI96004.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8] Length = 329 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 12/231 (5%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + + + I + + V+E+G G GNLT +L A+ V +E D + Sbjct: 41 RFGQHILNNPLVAQGIVDKANLKPTDNVLEVGPGTGNLTVRILD-KAKHVTAVEMDPRMA 99 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L P +L+II D +K D F I+N PY I + L+F +S Sbjct: 100 AELTKRVQGKPEQRKLDIIIGDFVKADLPYF------DVCISNTPYQISSPLVFRLLSHR 153 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P L+FQ+E R+ A+ + + RLS K + ++ F P P V Sbjct: 154 PLP---RVCILMFQREFALRLVARPGTEFWSRLSANVQLYAKVDHVMKVAKSCFRPPPMV 210 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+V+ +P P P E +T+ F + K + + + G +L Sbjct: 211 ESSVVRIVPLDPPPPVRFEEFDGLTRIIFARPNKVVHANFQARGVLEMLEA 261 >gi|71656161|ref|XP_816632.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi strain CL Brener] gi|70881773|gb|EAN94781.1| ribosomal RNA adenine dimethylase family protein, putative [Trypanosoma cruzi] Length = 344 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 13/245 (5%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 LKT S ++ K GQ+ L + ++ I E + V+EIG G GNLT+ LL + Sbjct: 51 LKTGGSQCGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV- 109 Query: 70 ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 ++KVI E D + L P ++L++I+ + L +F F + +AN+PY Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + L+F + P ++ L+FQ+E R+ AQ + Y RLSV + + + + Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 IS + F P PKV S+VI P E + + F ++ K + + Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPKHPAPDVDFEEWDGLVKFIFNRKNKKVSSIFRTKNAV 279 Query: 248 NLLHQ 252 L++ Sbjct: 280 QTLYE 284 >gi|293364052|ref|ZP_06610788.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2] gi|292552542|gb|EFF41316.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2] Length = 259 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 17/272 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + KK GQNFL D N+L +I + V+EIG G G+LT+ LL A V Sbjct: 1 MKQNNLNAKKRFGQNFLKDQNVLNRIVNLVDL-ENQNVLEIGPGRGDLTKKLL-QKANFV 58 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D+ L + + +++ +D L+ D N IIAN+PY I T + Sbjct: 59 KAYEIDRDLVRFLNEEIKE--EHFQLVPNDFLQEDISGLKN----YWIIANIPYYITTEI 112 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + + L+ QKEV ERI A+KNS Y +LS+ + + F + + Sbjct: 113 IFKILEN---IQNFYGAILMVQKEVAERIEAKKNSSEYSKLSLTCQYYSTTKKEFIVKAN 169 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENL 249 F P+PKV S +I + N + + + F +RRK L SLK+ E+ Sbjct: 170 SFIPAPKVDSAIISLTFNKNR--VWNKEINNFFKLCFLQRRKKLSFSLKQKYSLEKIESS 227 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + + TN R + L +E ++ N L D ++ Sbjct: 228 FEKLDLTTNTRIQELDLEKVLQLYNYLEDKEN 259 >gi|124808498|ref|XP_001348329.1| dimethyladenosine transferase, putative [Plasmodium falciparum 3D7] gi|23497221|gb|AAN36768.1|AE014818_33 dimethyladenosine transferase, putative [Plasmodium falciparum 3D7] Length = 381 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 11/231 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D + Sbjct: 74 KKHGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRM 132 Query: 83 FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + N LE+ + DA+K F KF AN+PY I + L+F IS Sbjct: 133 ISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF------DVCTANIPYKISSPLIFKLISHR 186 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+FQKE ER+ A +Y RL++ K T + +++ F P PKV Sbjct: 187 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKV 243 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S ++ IP + + + + F ++RKTL KR N+L Sbjct: 244 DSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 294 >gi|54020652|ref|YP_116181.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232] gi|62900495|sp|Q5ZZN4|RSMA_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|53987825|gb|AAV28026.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232] Length = 259 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 124/263 (47%), Gaps = 15/263 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK +GQNFL D I +KI E+ +IEIG G G LT LL A+ V E D+ Sbjct: 6 PKKRLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDK 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 PIL+ L II +D L F IIANLPY I +++LF + Sbjct: 64 NLIPILEKKFKNK--NLRIINEDFL----LAEFESKEKKTIIANLPYYITSKILFKIFAN 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ + L+ Q EV +RI A+ +P Y +LS+ + + K +F + P FFP PK Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAKVRKLFVVGPDSFFPKPK 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256 V S V+ F N +E+ T+ F +RKTL +L + + + Sbjct: 175 VNSAVVSFDFRANLDAKEMENFFWFTKRCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257 >gi|190348449|gb|EDK40904.2| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260] Length = 497 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI E Sbjct: 207 FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVIASEM 265 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K D F I+N PY I + L+F Sbjct: 266 DPRMAAELTKRVHGTPQQKKLEILLGDFIKTDLPYF------DVCISNTPYQISSPLVFK 319 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 320 LLNQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 376 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + + F ++ KT+ K +L + Sbjct: 377 PPPQVESSVVRIEIKNPRPNIDFDEWDGLLRICFVRKNKTIAAGFKSQNVLEILEK 432 >gi|212223555|ref|YP_002306791.1| dimethyladenosine transferase [Thermococcus onnurineus NA1] gi|226732633|sp|B6YTK7|RSMA_THEON RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|212008512|gb|ACJ15894.1| dimethyladenosine transferase [Thermococcus onnurineus NA1] Length = 272 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 27/282 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +++S Y + +GQNFL+ +I+++ E + V+EIG G G LT L A Sbjct: 7 SLISKYGLRANSDLGQNFLIVDDIIERNVERAELSGRDVVLEIGPGLGVLTDALSKR-AG 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV IEKD + IL+ + + +EII+ DALKVDF +F +I++NLPY I + Sbjct: 66 KVYAIEKDPRLVEILRK--EYNWSNVEIIEGDALKVDFPEF------NKIVSNLPYQISS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F ++ +E L++Q E +R+ A+ +Y RLS++ ++ ++ I Sbjct: 118 PITFRFLGYG-----FERAVLIYQLEFAQRMVARPGDRNYSRLSLMVQAKSYVELVERIG 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F+P PKV S VI P P +E + + + F RR T+ +LK+ L Sbjct: 173 RGAFYPRPKVDSAVIVLEPK--PKSEVIELNEDLVRALFQHRRSTVAAALKKSHHMLGLS 230 Query: 252 QAGIE-----------TNLRAENLSIEDFCRITNILTDNQDI 282 +A + R LS E+ I L N I Sbjct: 231 KAEFKNVKDVISSAPYAEKRVFQLSPEEVKEIEAYLKVNNII 272 >gi|152989813|ref|YP_001355535.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2] gi|151421674|dbj|BAF69178.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2] Length = 278 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 18/271 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL D +++ KI +S ++EIG G G+LTQ LL + VI E Sbjct: 3 VAAKKKFGQNFLKDKSVVNKIIQSM-PNTDNVIVEIGPGLGDLTQELLKK--KDVIAFEI 59 Query: 79 DQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D +L++ S+ + L++ D L + + ++ANLPY + T ++ Sbjct: 60 DPDLCTLLQEKFSESLEKRALKLHCGDVLDRWKQHLVDKE--YDLVANLPYYVATNIVLR 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P +++ ++ QKEV ++ A+ + LSVL G + + + P+ F Sbjct: 118 ALRD----PNCKNILVMLQKEVADKFCAKPGQREFSALSVLAGSAGEVQRVTVVKPNSFT 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252 P PKV S VI + + ++ + + AF + RKTL ++L + + LL Q Sbjct: 174 PPPKVDSAVILIKKNRS---IDDDNFETFLKIAFRQPRKTLLKNLAQSYPKELLQQLFQT 230 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G+ +N+R S + R+ +L + D A Sbjct: 231 LGVASNIRPHEASTSIYHRLYEMLKEKIDGA 261 >gi|254302694|ref|ZP_04970052.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322886|gb|EDK88136.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 264 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 79/268 (29%), Positives = 124/268 (46%), Gaps = 17/268 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N + ++ D L+VD K+ N +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSSKENYI-LVMGDVLEVDLRKYINQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + + +F I F P Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGETEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L+Q + N RAEN+S + F + NI Sbjct: 235 LNQIEVSENERAENISTDKFIELINIFE 262 >gi|84996835|ref|XP_953139.1| dimethyladenosine transferase [Theileria annulata strain Ankara] gi|65304135|emb|CAI76514.1| dimethyladenosine transferase, putative [Theileria annulata] Length = 377 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 40/284 (14%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I K GQ+ L + +L KI +++ TV+EIG G GN T L+TL A+KV+ I+ Sbjct: 67 GMIFVKKYGQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAID 125 Query: 78 KDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +K+ Q LE+I+ DAL+ F +F +ANLP+ I + +F Sbjct: 126 VDSRMISEVKNRCFQLGYTNLEVIEADALRTTFPRF------DICMANLPFQISSPFIFK 179 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + S L+FQKE ER+ A N YGRL++ T T + IS F Sbjct: 180 LLSHR---PLFRSAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRICKISAGSFN 236 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL------------ 244 P PKV S V+ +P P+ + + F ++R+TLR K+ Sbjct: 237 PPPKVDSMVVKIVPRQQPLVVDFGEWDGMIRICFSRKRRTLRSLFKKQSVLSILESNYKS 296 Query: 245 ----------------GGENLLHQAGIETNLRAENLSIEDFCRI 272 +L +G+ R+ +SI +F ++ Sbjct: 297 WCTINNKVPVYKPFKEFVIEILESSGL-AERRSITVSIAEFLKL 339 >gi|25146882|ref|NP_496061.2| hypothetical protein E02H1.1 [Caenorhabditis elegans] gi|27808654|sp|Q09522|DIMT1_CAEEL RecName: Full=Probable dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|20803714|emb|CAA87382.2| C. elegans protein E02H1.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 308 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 12/228 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E S TV+E+G G GNLT +L + A+ VI E D + Sbjct: 29 GQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +K P N+L++ D +K+++ FF++ +ANLPY I + + + Sbjct: 88 VKKRVMGTPLQNKLQVNGGDVMKMEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ Y RLSV K M+ + F P PKV S Sbjct: 142 PRY---AVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 V+ P P P + + + F ++ KTL + ++ Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTLMAIFRLSNVIEVIE 246 >gi|203288028|ref|YP_002223043.1| dimethyladenosine transferase [Borrelia recurrentis A1] gi|201085248|gb|ACH94822.1| dimethyladenosine transferase [Borrelia recurrentis A1] Length = 274 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 14/281 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K +L + I P+K GQN+L++ NI KI ++ + EIG G G Sbjct: 1 MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIRAKIIDALDIKKNEKIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T LL A + E D ++ IL + Q N ++I+ D LK ++ +I+ Sbjct: 61 AMTATLL-NKANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKKSIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I++NLPYNI ++++ I + + QKE+ +R+ A++ + +Y ++L Sbjct: 116 KIVSNLPYNIASKVISTLIEDEILIH----MVFTVQKELADRMIAREGNKNYSSFTILVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI F+P PKV ST I IP I + K+ + F RRK L+ Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLIPCKENI-KNFQIFNKLIRTVFTSRRKKLKN 230 Query: 240 SLKR-LGGENLLHQAGIE--TNLRAENLSIEDFCRITNILT 277 ++ + EN+L + ++ + R E +S+++F I N LT Sbjct: 231 TIINFIKNENILKKDFLKNFLDKRPEEISVKEFITIANKLT 271 >gi|318041295|ref|ZP_07973251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Synechococcus sp. CB0101] Length = 270 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 115/255 (45%), Gaps = 16/255 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQ++L D +L +I ++ TV+E+G G G LT+ LL A V +E Sbjct: 6 HRTRKRFGQHWLKDERVLDQILAAAELSAADTVLEVGPGRGALTERLLASPAAAVRAVEL 65 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L++ S P R ++ D L V + ++AN+PYNI LL + Sbjct: 66 DRDLVEGLQERFSGDP-RFDLTPGDVLAVPLPEAG------IVVANIPYNITGPLLERLV 118 Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P + L LL Q+EVGERI A+ S Y LSV + + + + P F Sbjct: 119 GRLDRPVAQPYRRLVLLMQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCLVPPRCFQ 178 Query: 197 PSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251 P PKV S V+ P P +++ + + F RRK LR +L L + L Sbjct: 179 PPPKVMSEVVAIDPLPPDQQLDPALARTVETLLRRCFAARRKMLRNTLAGLQPPDQLQAL 238 Query: 252 --QAGIETNLRAENL 264 +AGI R + + Sbjct: 239 TAEAGIGLEQRPQEV 253 >gi|148886595|sp|Q4A775|RSMA_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|144575570|gb|AAZ54014.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448] Length = 259 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 123/263 (46%), Gaps = 15/263 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQNFL D I +KI E+ +IEIG G G LT LL A+ V E D+ Sbjct: 6 PKKHLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLER-AKFVTCYEIDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 PIL+ L II +D L IIANLPY I +++LF + Sbjct: 64 NLIPILEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFAN 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FFP PK Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPK 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256 V S V+ F N +E T++ F +RKTL +L + + + Sbjct: 175 VNSAVVLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257 >gi|260943356|ref|XP_002615976.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720] gi|238849625|gb|EEQ39089.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720] Length = 322 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E Sbjct: 28 FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 86 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K D F I+N PY I + L+F Sbjct: 87 DPRMAAELTKRVHGTPQQKKLEILLGDFMKTDLPYF------DVCISNTPYQISSPLVFK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 141 LLNQPKPP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFR 197 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ KT+ K +L + Sbjct: 198 PPPQVESSVVRIEVKQPRPNIDFNEWDGLLRICFVRKNKTIAAGFKSNNVLEILEK 253 >gi|119953374|ref|YP_945583.1| dimethyladenosine transferase [Borrelia turicatae 91E135] gi|119862145|gb|AAX17913.1| dimethyladenosine transferase [Borrelia turicatae 91E135] Length = 278 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 14/284 (4%) Query: 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M +N N +S+K+ L+ I P+K GQN+L++ +I +KI ++ + + EIG G G Sbjct: 1 MNINYNSINSIKSALASKNIAPRKIWGQNYLINEHIREKIVDTLEIKENENIWEIGPGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +T +LL + V E D ++ IL + Q N ++I+ D LK ++ NI+ Sbjct: 61 AMTIILLK-KTNFLTVFEIDPKYSEILNEQFGQFKN-FKLIKGDFLKTYKQERQNIN--- 115 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +I +NLPYNI ++++ I + QKE+ +R+ A++ + +Y +VL Sbjct: 116 KIFSNLPYNIASKVISMLIEDG----ILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 + DI F+P PKV ST + IP I ++ K+ + F RRK L+ Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKRVI-KDFKAFNKLVRTVFISRRKKLKN 230 Query: 240 SLKRLGGE-NLLHQAGIE--TNLRAENLSIEDFCRITNILTDNQ 280 ++ + ++L + ++ + R E +S+++F I+N LT N Sbjct: 231 TIINFTKDGSILEEDFLKRFLDKRPEEISVKEFITISNKLTTNH 274 >gi|307298762|ref|ZP_07578565.1| dimethyladenosine transferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915927|gb|EFN46311.1| dimethyladenosine transferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 265 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 14/263 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 I K +GQNFL + ++I ES T++EIG G G+LT +LL G R VI Sbjct: 4 KSINIRLNKALGQNFLKSDRVSRRIVESVELNPSTTIVEIGVGSGSLTSILLEKGYR-VI 62 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D +F + + + R E+ +D LK D + + +AN+PY I + ++ Sbjct: 63 GFEIDTRFSEGNRRLEGE---RCELRYEDFLKAD---LSTLPDSVTYVANIPYYITSPII 116 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + P ++ L+ QKE +R+TA + YG L+V ++ +F +S Sbjct: 117 ERIMFD---GPSFDRAVLMVQKEYADRLTATPRTKEYGILTVNVNTFSEVRELFQVSRKE 173 Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250 F P P+V S VI NP + +K + F +RRK L+ +LK + E LL Sbjct: 174 FIPQPEVDSMVIELSLLENPPIGEARRDQYRKFVRHCFSQRRKKLKNNLKSIVDLPEELL 233 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 I ++RAE LS++DF + Sbjct: 234 GSMAIGVDVRAEELSVDDFVSLF 256 >gi|238764652|ref|ZP_04625597.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638] gi|238697144|gb|EEP89916.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638] Length = 214 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 75/210 (35%), Positives = 114/210 (54%), Gaps = 7/210 (3%) Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNI 129 + VIE D+ L Q ++L I Q+DA+K++F + +R+ NLPYNI Sbjct: 2 DHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAEQAGQSLRVFGNLPYNI 60 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T L+F+ S + + QKEV R+ A NS YGRL+V+ + + + Sbjct: 61 STPLMFHLFSYTNA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLE 117 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + P F P+PKV S V+ IPH+N P P + L +IT +AF +RRKT+R SL L Sbjct: 118 VPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLFTS 177 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + GI+ +RAEN+S+ +C++ N L+ Sbjct: 178 EQLIELGIDPIMRAENISVAQYCKLANWLS 207 >gi|327348821|gb|EGE77678.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 383 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 20/256 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E Sbjct: 32 FRMNTDIGQHILKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P RLE++ D +K D F I+N PY I + L F Sbjct: 91 DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ D P L+FQ+E R+ A+ Y RLSV + + + + F Sbjct: 145 LLAIDPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFK 201 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P V S+V+ +P + + + AF ++ KT+R S LG ++L +E Sbjct: 202 PPPAVESSVVRIVPKNPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLD--MLE 257 Query: 257 TNLRA----ENLSIED 268 +N R N+ +ED Sbjct: 258 SNYRTWCAQNNIPVED 273 >gi|284989485|ref|YP_003408039.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160] gi|284062730|gb|ADB73668.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160] Length = 288 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 121/276 (43%), Gaps = 17/276 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 +++ + ++ P K +GQNFL D N +++I ++ V+E+G + L Sbjct: 15 PAAIRDLAQQLELRPTKALGQNFLHDANTIRRIVRTAELTREDVVLEVGP-GLGSLTLGL 73 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 A V +E D + +L + + +RL +++ DAL++ + +P ++ Sbjct: 74 LPAAAHVTAVEIDPRLAALLPRTVAERAPALADRLTVVEADALRI---REVPGRAPTALV 130 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L P +L Q EV ER+ A SP YG S W Sbjct: 131 ANLPYNVAVPVLL---HLLELLPTLRRALVLVQAEVAERLAAAPGSPAYGVPSAKAAWYG 187 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + ++ VF+P P V S ++ P + + AF RRK LR +L Sbjct: 188 EVRRAGNVGRRVFWPEPNVDSGLVALDRR-PPPAGDRAATFTVIDAAFATRRKGLRAALA 246 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 R G E L AGI+ R E LS+ DF R+ Sbjct: 247 RWAGGPAAAEARLRAAGIDPTTRGEQLSVADFARLA 282 >gi|168011526|ref|XP_001758454.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690489|gb|EDQ76856.1| predicted protein [Physcomitrella patens subsp. patens] Length = 318 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 25/295 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++LK L PKK++GQ+++L+ + + E++ G V+EIG G G+LT L+ Sbjct: 30 RNTLKA-LKSQNHRPKKWLGQHYMLNDQVNIDMVEAAKIQPGDLVLEIGPGTGSLTNALV 88 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----------NI 115 GA +I +EKD ++ + H ++EII +D +K + Sbjct: 89 EAGAD-IIAVEKDPDMAALITERF-GHCGQVEIINEDFVKWPAALYMQQALRKRFGESEP 146 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRL 174 ++IANLP+NI T+++ + + + LL Q E R+ A ++ Y + Sbjct: 147 PPRAKVIANLPFNITTQVVKQLL---PLGCTFSHIILLLQDEAAIRLVDASPDAEEYRPI 203 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFG 231 S+L + + F + F P PKV + V+ F P ++S + AF Sbjct: 204 SILINFFSVPEYKFRVERDNFLPPPKVDAGVVSFALKQESEYPQVSSIKSFFTMVNSAFN 263 Query: 232 KRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 +RK LR+SL+ L ++ L G+ R E L+++ F + N L D + I Sbjct: 264 GKRKMLRKSLQHLHSPEATKSALTSIGLLETARPEELTLDQFVALHNTLNDPETI 318 >gi|312601595|gb|ADQ90850.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma hyopneumoniae 168] Length = 259 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 122/263 (46%), Gaps = 15/263 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQNFL D I +KI E+ +IEIG G G LT LL A+ V E D+ Sbjct: 6 PKKHLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 PIL+ L II +D L IIANLPY I +++LF + Sbjct: 64 NLIPILEKKFKNK--NLRIINEDFL----LAELESKEKKTIIANLPYYITSKILFKIFAN 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FFP PK Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPK 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256 V S V+ F N E T++ F +RKTL +L + + + Sbjct: 175 VNSAVVFFDFRENLEAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257 >gi|182415366|ref|YP_001820432.1| ribosomal RNA adenine methylase transferase [Opitutus terrae PB90-1] gi|254807877|sp|B1ZW80|RSMA_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|177842580|gb|ACB76832.1| ribosomal RNA adenine methylase transferase [Opitutus terrae PB90-1] Length = 277 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 14/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + + +L+ PK+++GQNFL+D NI++K E + G V+EIG G G LT Sbjct: 1 MPLTPTATRELLAQLGHQPKRFLGQNFLVDGNIVRKSLELAQVRRGDAVVEIGPGLGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDDALKVDFEKF-FNISSPIR 120 LL GA +V +EKD+ L +HP+ +++ DA++ ++ + Sbjct: 61 GALLEAGA-EVWAVEKDRTLHAHLSSTLQPRHPDTFHLLEADAVEHPLADLPAAHAAAFK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY I T W+ A P E + L+ Q+E +R A S +G +SV Sbjct: 120 IVANLPYAIATP----WLDAVLGGPLPERMVLMLQQEAAQRYVAMPGSKSFGAISVFLQS 175 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 + + FFP P V S ++H + P E +K + + F +RRK + Sbjct: 176 AYEVAPGHRVEASCFFPRPDVDSYLLHLVRRAEPFVFTPE-VKALIRSVFQQRRKQIGGL 234 Query: 241 LKRLGGE------NLLHQAGIETNLRAENLSIEDFCRI 272 L+ + L AG+ + R E + E + + Sbjct: 235 LRDRLPDHGASWLARLTAAGLSSLTRPEAIPTELWRAL 272 >gi|71425341|ref|XP_813086.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi strain CL Brener] gi|70877938|gb|EAN91235.1| ribosomal RNA adenine dimethylase family protein, putative [Trypanosoma cruzi] Length = 344 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 13/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ K GQ+ L + ++ I E + V+EIG G GNLT+ LL ++KVI E Sbjct: 59 GMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLL-QASKKVIAFE 117 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L++I+ + L +F F + +AN+PY I + L+F Sbjct: 118 VDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPYAISSALVF 171 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P ++ L+FQ+E R+ AQ + Y RLSV + + + + IS + F Sbjct: 172 KLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHLMKISKNSF 227 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+VI P E + + F ++ K + + L++ Sbjct: 228 NPPPKVESSVIRLDPKHPAPDVDFEEWDGLVKFIFNRKNKKVSSIFRTKNAVQTLYE 284 >gi|325108886|ref|YP_004269954.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305] gi|324969154|gb|ADY59932.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305] Length = 305 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 28/293 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 KSH L+ +L+ Y I P+ +GQN+L+DLNI++ I + V+E+G G G +T + Sbjct: 9 KSH-LQQLLAQYGINPRGDLGQNYLIDLNIIEFIVSQAHLGPNDVVLEVGTGTGGMTAFM 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK-----------VDFEKFF- 113 + A V+ +E D + D H N L ++ DAL+ V E+ Sbjct: 68 VQQAAH-VVTVEVDTNMHRMASDQLGHHEN-LTLLHKDALRNKNNFAPEVLEVLQEQLAV 125 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 + + ++ +ANLPYNI T L+ N ++ + WE + + Q E+G R+ A YG Sbjct: 126 DPARRLKFVANLPYNIATPLVSNLVATELP---WERMVVTIQLELGLRMGAGPGKSTYGA 182 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFG 231 LS + ++ + P VF+P PKV S V+ +P+ + + F Sbjct: 183 LSAWLQAQAFVKVLKKLPPTVFWPRPKVDSAVVRLVPNPAGRKEIADRKFFHDFVRRVFL 242 Query: 232 KRRK--------TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +RRK R+ L + + +L + N RAE L ++N L Sbjct: 243 QRRKLLRSVLVGMYRKELSKPLVDEVLAAMELGPNTRAEELPPPQLVELSNRL 295 >gi|83025297|gb|ABB95741.1| mitochondrial transcription factor B1 [Tigriopus californicus] Length = 355 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 139/300 (46%), Gaps = 24/300 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S + +L Y I K+ + QNF+LD L KIA ++G L G TV+EIG GPG +T+ L Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116 + GAR+V+VIEKD +F L+ + R+ I D LKV+ KF + Sbjct: 61 IGNGARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120 Query: 117 -SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQKNSPH 170 IR+++NLP+NI L I S L FQKEV ERI A+ + Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAXDNLFSYGRVPAVLTFQKEVAERIIARPGDRN 180 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLSVL +A + + + F P+ V V+ +P P I L+K+ Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240 Query: 230 FGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 F ++K +R+++ L LL I N A +L + DF +I D D Sbjct: 241 FHGKQKXVRKTIGHLFPNQNRLERAXILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300 >gi|160934055|ref|ZP_02081442.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753] gi|156866728|gb|EDO60100.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753] Length = 254 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 16/249 (6%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 +AE G+ +G+ +EIG G G LT L A KV IE D++ P+L++ + N + Sbjct: 1 MAEECGAREGVCALEIGPGIGVLTYELARR-ADKVAAIELDRRLLPVLEETLGEFSN-VT 58 Query: 99 IIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 +I D +K+D + P+ + ANLPY I + ++ + +SLT++ Q Sbjct: 59 VISGDVMKLDLRQVIQEQFGDKPVCLCANLPYYITSPVIMKVLEEKLP---VDSLTVMVQ 115 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 KE +RI A+ S + G +S+ + + M+F +S F P P V S VI P Sbjct: 116 KEAAQRICAEPGSRNVGAVSIAVRYYAQPEMLFQVSRGSFLPPPNVDSAVIRLKIRETPA 175 Query: 216 PCCLES--LKKITQEAFGKRRKTLRQSL------KRLGGENLLHQAGIETNLRAENLSIE 267 + + + AF +RRKTL SL + L I N RAE L++E Sbjct: 176 VSVEDEAFFFQTVKAAFAQRRKTLANSLSAGLAVSKQQALETLAACEIPPNARAEELTME 235 Query: 268 DFCRITNIL 276 F R+++ L Sbjct: 236 RFGRLSDAL 244 >gi|322823660|gb|EFZ29364.1| ribosomal RNA adenine dimethylase family protein, putative [Trypanosoma cruzi] Length = 344 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 13/237 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ K GQ+ L + ++ I E + V+EIG G GNLT+ LL + ++KVI E Sbjct: 59 GMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV-SKKVIAFE 117 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L++I+ + L +F F + +AN+PY I + L+F Sbjct: 118 VDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPYAISSALVF 171 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P ++ L+FQ+E R+ AQ + Y RLSV + + + + IS + F Sbjct: 172 KLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHLMKISKNSF 227 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+VI P E + + F ++ K + + L++ Sbjct: 228 NPPPKVESSVIRLDPKHPAPDVDFEEWDGLVKFIFNRKNKKVSSIFRTKNAVQTLYE 284 >gi|255728801|ref|XP_002549326.1| dimethyladenosine transferase [Candida tropicalis MYA-3404] gi|240133642|gb|EER33198.1| dimethyladenosine transferase [Candida tropicalis MYA-3404] Length = 324 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E Sbjct: 30 FKFNTNLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-KARKVVAVEM 88 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K + F I+N PY I + L+F Sbjct: 89 DPRMAAELTKRVHGTPQEKKLEILLGDFMKTELPYF------DICISNTPYQISSPLVFK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E +R+ A+ Y RLS T + + + F Sbjct: 143 LLNQPRPP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFR 199 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ KT+ K ++L + Sbjct: 200 PPPQVESSVVRIEVKNPRPNVDFNEWDGLLRICFVRKNKTIAAGFKSNNVIDILEK 255 >gi|170097177|ref|XP_001879808.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645211|gb|EDR09459.1| predicted protein [Laccaria bicolor S238N-H82] Length = 290 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 12/231 (5%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + +KI +++ V+E+G G GNLT +L A+ V +E D + Sbjct: 10 RFGQHILKNPATAQKIVDAANLKPTDKVMEVGPGTGNLTVKILE-KAKHVTAVEMDPRMA 68 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + P +LE+I D +KVD F I+N PY I + L+F +S Sbjct: 69 AEVIKRVQGTPEQRKLEVIIGDFVKVDMPYF------EVCISNTPYQISSPLVFRLLSHR 122 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQ+E R+ A+ + + RLS K + ++S + F P P+V Sbjct: 123 ---PLFRVAILMFQREFAMRLVARPGTALWSRLSANVQLYAKVDNIINVSRNDFRPPPQV 179 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+VI +P P P E + + F + KT+R + + G +L Q Sbjct: 180 ESSVIRLVPIDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ 230 >gi|284161199|ref|YP_003399822.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631] gi|284011196|gb|ADB57149.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631] Length = 251 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 129/260 (49%), Gaps = 18/260 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L+D L KI + V+E+G G GNLT++LL +KV IE D +F Sbjct: 5 KSKGQHILVDKKYLYKIVRYADLSYNDVVLEVGCGLGNLTRLLL-RSVKKVYGIEIDSRF 63 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL++ + R +I+ DALKVDF KF + +AN+PY I + L F + Sbjct: 64 CKILREKFADEIESGRFVLIEGDALKVDFPKF------DKFVANIPYQISSPLTFKLLKH 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D ++ + +QKE ER+ A++ S YGRLSV+ +A ++ I P F P PK Sbjct: 118 D-----FKLAVVTYQKEFAERLVAREGSKKYGRLSVVAKAYCRAEILDIIPPKAFRPRPK 172 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET--- 257 V S ++ P + E + + + AF +RRK + ++ E ++A + Sbjct: 173 VESAIVRIFPEPEVVVENKEIFEDLVRFAFSRRRKKFGKIVEEWCKERG-YKAEVPEEYR 231 Query: 258 NLRAENLSIEDFCRITNILT 277 + R E + + + +I + + Sbjct: 232 DKRPEEIPAKVYAKIADEVA 251 >gi|284046698|ref|YP_003397038.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684] gi|283950919|gb|ADB53663.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684] Length = 273 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 118/281 (41%), Gaps = 15/281 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ + + I P + +GQNFL+D NIL IA ++ V+EIG G G L+ Sbjct: 1 MSEPVQPSLRRMRAFGIRPNRELGQNFLIDSNILDVIARAAELAPEDVVLEIGGGLGVLS 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + L A V V+E D+ L D H + DA+++D P +++ Sbjct: 61 EHLAERAAH-VHVVEIDRGLEDALHDALDPHAATTTLHMGDAMQLDLAALH--PQPTKVV 117 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I + + W + QKEVGER A+ + YG SV+ Sbjct: 118 ANLPYGIAAGAILRTVEQLPHATGW---VAMVQKEVGERFAARPATDAYGIPSVIAQLAC 174 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ +S VFFP P V S ++ P +L+ Q AF RRKTL +S Sbjct: 175 DVRVLRPVSRRVFFPVPNVDSVLVGLERTG---PAAPRALRSFVQGAFAHRRKTLAKSAG 231 Query: 243 RLG------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277 G L G ++RAE LS + L Sbjct: 232 IAGVAAPDATRAALEALGHPADVRAERLSPAQLRELWERLQ 272 >gi|332021836|gb|EGI62176.1| Putative dimethyladenosine transferase [Acromyrmex echinatior] Length = 266 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 40/268 (14%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96 + E + V+EIG G GN+T +L A+KV+ E D + L+ H ++ Sbjct: 1 MVEKAALRPTDVVLEIGPGTGNMTVKMLE-KAKKVVACEIDPRMIAELQKRVQGTIHQSK 59 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 L+I+ D LK D FF++ +AN+PY I + L+F +S P + L+FQ+ Sbjct: 60 LQIVYGDVLKSDLP-FFDLC-----VANIPYQISSPLVFKLLSHR---PLFRCAVLMFQR 110 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 E ER+ A+ Y RLS+ T + M+ + + F P PKV S V+ P P P Sbjct: 111 EFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRNPPPP 170 Query: 217 CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--------------------GIE 256 + +T+ AF ++ KTL + K+ +L + I+ Sbjct: 171 INYQEWDGLTRIAFVRKNKTLSAAFKQTTVVTMLEKNYKIHCSLNNKIVSDNFDIKQLID 230 Query: 257 --------TNLRAENLSIEDFCRITNIL 276 N RA + I+DF + + Sbjct: 231 HVLEKADAKNKRARTMDIDDFISLLHAF 258 >gi|242398592|ref|YP_002994016.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM 739] gi|259494260|sp|C6A222|RSMA_THESM RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|242264985|gb|ACS89667.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM 739] Length = 273 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 27/278 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +++S Y + P +GQNFL+ +++K+ E + + T++EIG G G LT L A Sbjct: 7 SLISKYNLKPNSDLGQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAKR-AG 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV IEKD + ILK + + +EI+Q DALK+ F +F ++++NLPY I + Sbjct: 66 KVYAIEKDSRIIEILKK--EYNWSNVEIMQGDALKIKFPEF------NKVVSNLPYQISS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F + D +E L++Q E +R+ A+ +Y RLSV+ + ++ I Sbjct: 118 PITFKLLKYD-----FERAVLIYQLEFAQRMVAKPGDKNYSRLSVMVQAKVNVDLVERIG 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F+P PKV S VI P P +E + + + F RRK ++LK L Sbjct: 173 RGAFYPKPKVDSAVIVMEPK--PKDEQIELNENLVKALFQHRRKLASKALKDSYHMLGLT 230 Query: 252 QAGI-----------ETNLRAENLSIEDFCRITNILTD 278 + +N R LSIED I L + Sbjct: 231 REDFKKFKPIIERVPHSNKRVFQLSIEDIKDIEEFLRN 268 >gi|148699068|gb|EDL31015.1| RIKEN cDNA D530005L17 [Mus musculus] Length = 1620 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 19/251 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +++ I + + V+E+G G GN+T LL A+KV+ E D + L P Sbjct: 147 VVESIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVAELHKRVQGTP 205 Query: 95 --NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 ++L+++ D LK D F +ANLPY I + +F + PF+ L Sbjct: 206 LASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVFKLL---LHRPFFRCAIL 256 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 +FQ+E R+ A+ Y RLS+ T + + + F PKV S+V+ P Sbjct: 257 MFQREFALRLVAKPGDKLYCRLSINTQLLAHVDHLMKVGKNNFRLPPKVESSVVRIEPKN 316 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIE 267 P P + + + F ++ KTL + K + LL + ++ + +E+ SI Sbjct: 317 PPPPINFQEWDDLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVISEDFSIA 376 Query: 268 DFCRITNILTD 278 D +I +ILT Sbjct: 377 D--KIQHILTS 385 >gi|146414153|ref|XP_001483047.1| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260] Length = 497 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI E Sbjct: 207 FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVIASEM 265 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K D F I+N PY I + L+F Sbjct: 266 DPRMAAELTKRVHGTPQQKKLEILLGDFIKTDLPYF------DVCISNTPYQISSPLVFK 319 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 320 LLNQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 376 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + + F ++ KT+ K +L + Sbjct: 377 PPPQVESSVVRIEIKNPRPNIDFDEWDGLLRICFVRKNKTIAAGFKSQNVLEILEK 432 >gi|319760270|ref|YP_004124208.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str. BVAF] gi|318038984|gb|ADV33534.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str. BVAF] Length = 269 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 94/264 (35%), Positives = 140/264 (53%), Gaps = 11/264 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ FL D NI+ I T+IEIG G G LTQ +L + +IVIE+D Q Sbjct: 12 KKKWGQIFLTDQNIINSIINIFQPQHKQTIIEIGPGLGALTQPILNV-VDFLIVIERDPQ 70 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139 L + + +L+I D +K++F + IR+I NLPYNI T+L+ + Sbjct: 71 LTQKL--FQNFNTKKLKIFNTDVMKINFFNLIPLKSNQKIRLIGNLPYNIATQLIVHLFK 128 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + + QKEVG+RI AQ NS YGRLS++T + + + ++S F P P Sbjct: 129 ---YTKIIYDMHFMLQKEVGKRIIAQPNSKEYGRLSIMTQYHYQVSSRLEVSKQSFIPIP 185 Query: 200 KVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 KV S +I F P+ P + L +T+ AF +RRK ++ SL L + + G++ Sbjct: 186 KVESMIIQFTPYHAHFPYPIVDIRLLSFLTKIAFHQRRKIIKNSLSSLFNTKEMQKCGLD 245 Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280 T LR+ENL+I+ FC + IL + Sbjct: 246 TTLRSENLTIQQFCMLAEILHNKC 269 >gi|225159370|ref|ZP_03725666.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium TAV2] gi|224802031|gb|EEG20307.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium TAV2] Length = 285 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 23/287 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + + +L+ PK+++GQNFL+D NI++K E + G TV+E+G G G LT Sbjct: 1 MPLSPSATRELLARLGHTPKRFLGQNFLVDGNIVRKSLELAAVSAGDTVVEVGPGLGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKF--------- 112 + LL GA V +EKD + L ++ + P L +++ DA++ Sbjct: 61 RALLIAGAN-VWAVEKDAALYAHLAATLAPEFPGTLHLMEGDAVEFPLAGLKPAAAAATG 119 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 S +I+ANLPY I T W+ A P + L+ Q E +R AQ S +G Sbjct: 120 TGSGSDFKIVANLPYAISTP----WMDAVLSGPLPLRMVLMLQLEAAQRYVAQPGSKLFG 175 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232 +S+L + +S F P P V S ++H + P E+ K + + F + Sbjct: 176 GISILLQSAFEVAPGHRVSGACFHPRPDVDSCLLHLVRRAQPYVFRAET-KALIRACFQQ 234 Query: 233 RRKTLRQSLKRLGGEN---LLHQA----GIETNLRAENLSIEDFCRI 272 RRK +R L+ ++ L G+ N R E + + + + Sbjct: 235 RRKQIRPLLRGRLPDDGRAWLATLEATTGLGGNARPEEIPVPAWQAL 281 >gi|169628224|ref|YP_001701873.1| dimethyladenosine transferase [Mycobacterium abscessus ATCC 19977] gi|169240191|emb|CAM61219.1| Probable dimethyladenosine transferase (16S rRNA dimethylase) [Mycobacterium abscessus] Length = 301 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 125/279 (44%), Gaps = 19/279 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + P K +GQNF+ D N +++I +SG G VIE+G G G+LT LL Sbjct: 22 RTEIRQLAKDLDFRPTKTLGQNFVHDANTIRRIVSASGVGKGDHVIEVGPGLGSLTLGLL 81 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122 GA V +E D L +H NR +I D L + P ++ Sbjct: 82 DKGA-AVTAVEVDPVLARRLPTTIKEHSHSEFNRFSVIHQDVLNLTPADI--QGEPTAMV 138 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ L ++ +++ ++ Q EV +R+TA+ S YG SV + Sbjct: 139 ANLPYNVAVPALLRILTE---FDSVKTILVMVQSEVADRLTAEPGSRIYGVPSVKVRYFG 195 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCL-ESLKKITQEAFGKRRKTLR 238 K + +SP VF+P P+V S ++ H + P + L + +F +RRKT R Sbjct: 196 KVKRLGTVSPAVFWPIPRVYSGLVRIDRHADAAWPSDAGFRKELFDLIDISFAQRRKTSR 255 Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + G L A I+ R E L + DF R+ Sbjct: 256 NAFAEWAGSGDESARRLLAASIDPARRGETLDVADFARL 294 >gi|189192010|ref|XP_001932344.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973950|gb|EDU41449.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 380 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 14/248 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + S K +H K +GQ+ L + + I + + V+E+G G GNLT ++ Sbjct: 21 RPTSAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLI 80 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A++V +E D + L P RL I D +K + +F I+ Sbjct: 81 LK-AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCIS 133 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N PY I + L+F ++ P L+FQ+E R+ A+ Y RLSV +K Sbjct: 134 NTPYQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSK 190 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + + F P P+V S V+ P E + + F ++ +TLR S Sbjct: 191 VSHVMKVGRNNFNPPPQVESNVVRIEPKNPRPQIAYEEWDGLLRICFVRKNRTLRASF-- 248 Query: 244 LGGENLLH 251 LG +L Sbjct: 249 LGTAAVLE 256 >gi|296123743|ref|YP_003631521.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776] gi|296016083|gb|ADG69322.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776] Length = 314 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 125/289 (43%), Gaps = 26/289 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L + +I P+ +GQNFL+D+N+++ +A + V+E+G G G LT L Sbjct: 12 LTELFHKLRINPRGDLGQNFLIDINLVELVAREAQLSKDDVVLEVGTGTGGLTIFLAAE- 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------------VDFEKFFNISS 117 A +V+ IE D I + N ++ + DALK V+ S Sbjct: 71 AGEVVSIEYDPNMHAIATKQHAGLSN-VQWVNTDALKNKNQLHPLLVESVNTALARRPGS 129 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++ANLPYNI T ++ + I WP W + + Q E+ R+ A S Y LS+ Sbjct: 130 TLKLVANLPYNIATPVI-SMIVGSEWP--WSRMVVTVQWEMAVRMQATPGSSDYSGLSIW 186 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRK 235 + ++ + P VF+P PK+ S V+ P E + F RRK Sbjct: 187 LQSQCDIEILRKLPPDVFWPRPKIDSAVVLVTPAPARRDRIADPEFFHNYLRAIFMHRRK 246 Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 LR L + LL QAGI RAE L E + N+L Sbjct: 247 LLRGVLCSTYSQVAKPRIDELLQQAGITPQARAEELPTEIHVALANLLY 295 >gi|254456784|ref|ZP_05070212.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1] gi|207085576|gb|EDZ62860.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1] Length = 258 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 18/269 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ ++ KK GQNFL D +L+KI E+ V+EIG G G+LT+ L + + V Sbjct: 1 MNKNSVVAKKKFGQNFLKDEAVLRKIIEAM-PKSDNKVVEIGPGLGDLTKYL--VDVKSV 57 Query: 74 IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 E D +L+ + RL I D L+ + P ++ANLPY I T Sbjct: 58 EAFEVDTDLCKLLQSTFKEEIATKRLHINCGDVLQAWQSSLID--EPYDLVANLPYYIAT 115 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ ++ P +++ ++ Q EV E+ A + +G LSV+T +A ++ + Sbjct: 116 NIILKALAD----PMCKNILVMVQLEVAEKFCAHEGEKVFGSLSVITQSVGEAHIVMQVP 171 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P F P PK+ S V + + E + + + AF + RKTL ++L +++L Sbjct: 172 PTAFEPPPKIDSAVFLIRKNADR---SDEDFEGLLRVAFKQPRKTLMKNLSANYEKSILQ 228 Query: 252 ----QAGIETNLRAENLSIEDFCRITNIL 276 + + +R +S +D+ ++ + Sbjct: 229 EVFNELSLALTIRPHQVSTQDYHQLYKKI 257 >gi|225431251|ref|XP_002267827.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 383 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 12/223 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I S TV+EIG G GNLT LL A++V+ +E D + Sbjct: 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLL-QAAQRVVAVELDARM 108 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ ++H ++L +I DALK DF +F ++AN+PY I + L+ + Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S TLL QKE R+ A + RL+V + + D+S F P PK Sbjct: 163 ANP---FRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S+V+ P L T+ F K+ KTL + K Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFKH 262 >gi|308234122|ref|ZP_07664859.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829] gi|328943654|ref|ZP_08241119.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829] gi|327491623|gb|EGF23397.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829] Length = 315 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 22/283 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +LS + + K +GQNFL++ +++ I E + V+EIG G G L+ LL + Sbjct: 14 DVLSSFGLYTKHRLGQNFLIEDSVIGHILELAHVQADDYVVEIGPGIGTLSCALLPR-VK 72 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRII 122 ++ IE D+ +L + ++ ++ E+I DALKV ++ + +++I Sbjct: 73 RLCAIEADRVLPDVLAETLGEYADKFELISADALKVSADEIRAKLFSADRDGNACSVKLI 132 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPY I + ++ P L ++ Q EV +R+ AQ YG S Sbjct: 133 ANLPYQIAATAVLRYLE---MLPELNELIVMVQSEVAQRMAAQPAHKLYGAYSAKLALYA 189 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLR 238 + F ++P FFP+P V S VIH C + ++ AF +RRKTL Sbjct: 190 ECVGGFKVAPSNFFPAPHVMSEVIHIQRRSADKQLCKAYERAYVARVIDAAFSQRRKTLL 249 Query: 239 QSLKRLGGE--NLLHQAG---IETNLRAENLSIEDFCRITNIL 276 L G + ++L I+ + R E L+ F + L Sbjct: 250 NCLCACGFDKQDVLTACDTIQIDVHERGEKLTPSQFVELARAL 292 >gi|19074123|ref|NP_584729.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1] gi|19068765|emb|CAD25233.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1] Length = 277 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 15/227 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K GQ+ L +L ++ I E + TV+E+G G GNLT LL A+KV+ E D Sbjct: 5 KFNKQHGQHILKNLGVIDTIIERARIKPTDTVLEVGGGTGNLTMKLL-QKAKKVVCYEID 63 Query: 80 QQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + L + P + ++ DALK DF F I NLPY I + +F Sbjct: 64 PRLAAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCITNLPYQISSPFVFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + D ++ ++FQKE +R+ A+ SP Y RLSV + + +S + F Sbjct: 118 LLKYD-----FKCAFIMFQKEFSDRLVARPGSPEYCRLSVGAQILAQIDHVLKVSKNSFV 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 P PKV S+ + P + P L + + F ++ KTLR + K Sbjct: 173 PPPKVESSFVRIEPRIPRPPIDLGEFDRFLKICFLRKNKTLRANFKN 219 >gi|88608711|ref|YP_506251.1| dimethyladenosine transferase [Neorickettsia sennetsu str. Miyayama] gi|119365038|sp|Q2GE45|RSMA_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|88600880|gb|ABD46348.1| dimethyladenosine transferase [Neorickettsia sennetsu str. Miyayama] Length = 262 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 97/258 (37%), Positives = 140/258 (54%), Gaps = 12/258 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ+F+ D +L KI +++ S+ G + EIGAG G L+ +L +I +EKD++ Sbjct: 5 NKLLGQHFIYDREVLDKIIDAATSVKGKHIFEIGAGSGTLSAAILLREPASLISVEKDKR 64 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 F L + +Q+ N + I DAL + F + IIANLPYNI T LL W++ Sbjct: 65 FSESLSSLMAQYQNYKYTI--GDALLIRLSSLFKQ-EKVTIIANLPYNIATHLLLGWMNE 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + L+FQKEV +RI AQ S +YG LSVL KA F ++P VF P P+ Sbjct: 122 LEQ---VREMVLMFQKEVADRICAQPKSKNYGALSVLVQLECKAESQFALAPEVFTPPPR 178 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGI 255 VTSTV+ P N P L+KI E F +RRK +++SL R+ + + L Q G Sbjct: 179 VTSTVLKLTPLKNKWPRNKPVLEKILTEGFSQRRKMIKKSLSRIFKDSEALHSALAQVGA 238 Query: 256 ETNLRAENLSIEDFCRIT 273 +R E L+ E CR++ Sbjct: 239 SPTMRIEELNPEQLCRLS 256 >gi|313125978|ref|YP_004036248.1| dimethyladenosine transferase [Halogeometricum borinquense DSM 11551] gi|312292343|gb|ADQ66803.1| dimethyladenosine transferase [Halogeometricum borinquense DSM 11551] Length = 289 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 25/290 (8%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGN 60 T + ++ + Q+FL+D +L +I D V+E+G G G Sbjct: 11 TAAHPPRDPDRLIRRAGLRGDPDQDQHFLVDDRVLDRIPSYLPEDTDTSHVLEVGGGTGA 70 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSP 118 LT LL + A +V V+E+D + L++ + +RL I++ DAL++D +F Sbjct: 71 LTDRLLRV-ADRVTVVERDTRLAEFLREEFADAIEADRLTILEGDALEIDLPEF------ 123 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++NLPY I + + F + P L L+FQKE GER+ A+ + YGRLSV Sbjct: 124 TACVSNLPYGISSEITFRLL------PRGVPLVLMFQKEFGERMAAETGTDEYGRLSVSA 177 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTL 237 ++ + F P+P V S V+ P E+ + F +RRKT+ Sbjct: 178 QHYGDVEVVETVPKEAFDPAPAVESVVVRVTPRAPDYEVDDEAFFLDFVKALFTQRRKTI 237 Query: 238 RQSLKRLG-------GENLLHQAGIE-TNLRAENLSIEDFCRITNILTDN 279 R ++ E ++ A + RA N+S E F +T + ++ Sbjct: 238 RNGIRNTAHISGLEDPEAVVEAADEDVLRKRAGNMSPEAFAALTALADEH 287 >gi|241950377|ref|XP_002417911.1| 18S rRNA dimethylase, putative; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase, putative; dimethyladenosine transferase, putative [Candida dubliniensis CD36] gi|223641249|emb|CAX45629.1| 18S rRNA dimethylase, putative [Candida dubliniensis CD36] Length = 330 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI +E Sbjct: 30 FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEM 88 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K D F I+N PY I + L+F Sbjct: 89 DPRMAAELTKRVHGTPQEKKLEILLGDFMKTDLPYF------DICISNTPYQISSPLVFK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E +R+ A+ Y RLS T + + + F Sbjct: 143 LLNQPRPP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFR 199 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ KT+ K ++L + Sbjct: 200 PPPQVESSVVRIEVKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSSNVIDILEK 255 >gi|330912552|ref|XP_003295983.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1] gi|311332221|gb|EFQ95920.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1] Length = 380 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 14/248 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + S K +H K +GQ+ L + + I + + V+E+G G GNLT ++ Sbjct: 21 RPTSAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLI 80 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A++V +E D + L P RL I D +K + +F I+ Sbjct: 81 LK-AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCIS 133 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N PY I + L+F ++ P L+FQ+E R+ A+ Y RLSV +K Sbjct: 134 NTPYQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSK 190 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + + F P P+V S V+ P E + + F ++ +TLR S Sbjct: 191 VSHVMKVGRNNFNPPPQVESNVVRIEPKNPRPQIAYEEWDGLLRICFVRKNRTLRASF-- 248 Query: 244 LGGENLLH 251 LG +L Sbjct: 249 LGTAAVLE 256 >gi|254796737|ref|YP_003081573.1| dimethyladenosine transferase [Neorickettsia risticii str. Illinois] gi|254589984|gb|ACT69346.1| dimethyladenosine transferase [Neorickettsia risticii str. Illinois] Length = 262 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 136/258 (52%), Gaps = 12/258 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ+F+ D +L KI ++ S+ G + EIGAG G L+ +L ++ +EKD++ Sbjct: 5 NKLLGQHFIYDREVLDKIIDTVTSVKGKHIFEIGAGSGTLSAAILLREPASLMSVEKDKR 64 Query: 82 FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 F L + +Q+ N + I DAL + + + IIANLPYNI T LL W++ Sbjct: 65 FSESLSSLMAQYQNYKYTI--GDALLIRLSSLYKQ-EKVTIIANLPYNIATHLLLGWMNE 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + L+FQKEV +RI AQ S YG LSVL K F ++P VF P PK Sbjct: 122 LEH---IREMVLMFQKEVADRICAQPKSKSYGTLSVLVQLECKVESQFTLAPEVFTPPPK 178 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGI 255 VTSTV+ P P L+KI E F +RRK +++SL R+ ++ L AG Sbjct: 179 VTSTVLKLTPLEKKWPRNKPVLEKILTEGFSQRRKMIKKSLSRVFKDSEALHFALAHAGA 238 Query: 256 ETNLRAENLSIEDFCRIT 273 +R E L+ E C+++ Sbjct: 239 SPTMRIEELNPEQLCKLS 256 >gi|218962077|ref|YP_001741852.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Candidatus Cloacamonas acidaminovorans] gi|167730734|emb|CAO81646.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Candidatus Cloacamonas acidaminovorans] Length = 267 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 13/266 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + K +GQNFL D +I +KI +V EIG G G LT ++ ++ E Sbjct: 8 MKALKALGQNFLTDKSIAEKIVALGELQPEDSVWEIGPGTGILTDEIIKNNV-QLRAFEL 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137 D++ + L S+++ NR+ + Q D L+VD+ +P+++IAN+PY I + LL Sbjct: 67 DRRLYKYL---SARYENRIILEQTDILQVDWNSLIRKDGTPLKLIANIPYQITSPLLALL 123 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + F+ + L+ QKEV ER++A+ + +Y L++ + +S F P Sbjct: 124 ---EEYSRFFSRIVLMVQKEVAERLSAKPGNKNYAPLTIRLRLVFDISSKIQVSREKFSP 180 Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--- 253 PKV S VI +P N P+ E K+ AF RRKTL +L + G+ + Sbjct: 181 MPKVDSAVILLLPRENKPVIKHPEHFHKLLHAAFVHRRKTLANNLIPVLGKEKTEELAKL 240 Query: 254 -GIETNLRAENLSIEDFCRITNILTD 278 I+ R E L+ EDF +++ L D Sbjct: 241 SHIDFGKRGEELAEEDFILLSDCLAD 266 >gi|50420303|ref|XP_458685.1| DEHA2D05038p [Debaryomyces hansenii CBS767] gi|52782772|sp|Q6BSY5|DIM1_DEBHA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49654352|emb|CAG86824.1| DEHA2D05038p [Debaryomyces hansenii] Length = 327 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + +G V+E+G G GNLT +L ARKVI E Sbjct: 30 FKFNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQ-ARKVIASEM 88 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L PN +L+I+ D +K + F I+N PY I + L+F Sbjct: 89 DPRMAAELTKRVHGTPNQKKLDILLGDFIKTELPYF------DVCISNTPYQISSPLVFK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLS T + +S + F Sbjct: 143 LLNQPRPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVSKNNFR 199 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + + F ++ KT+ K ++L + Sbjct: 200 PPPQVESSVVRIEVKVPRPNIDFNEWDGLLRICFVRKNKTIAAGFKSNNILDILEK 255 >gi|317506076|ref|ZP_07963904.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974] gi|316255648|gb|EFV14890.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974] Length = 296 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 17/275 (6%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + + P K +GQNF+ D +++I ++G +V+EIG G G+LT LL + Sbjct: 26 VRALAGQLDVRPTKRLGQNFVHDPGTIRRIVAAAGLRPEDSVLEIGPGLGSLTLGLLDV- 84 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A V +E D + L + I+ + P R ++ DAL++D ++P ++ANLPY Sbjct: 85 AHDVTAVEVDPKLAEALPRTIAERAPGRQFRLVVKDALQLDAADL--PTAPTALVANLPY 142 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 N+ + ++ P ++ Q EVG+R+ A+ + G ++ T + +A + Sbjct: 143 NVAVPVFLRALAE---FPSIRRALVMVQLEVGQRLAAKPGAREGGVPTLKTAFYGEAELT 199 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLRQSLKR 243 +SP VF+P P V S ++ F + P P +++ ++ AF RRKTL LK Sbjct: 200 NKVSPEVFWPRPNVDSALVRFTRREDSPWPTDEQTRQAVFRLIDAAFASRRKTLGAVLKP 259 Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 G L AG+ + R E L IE F + Sbjct: 260 WAGSPEELRRRLEAAGVPGSARGEELGIEQFVALA 294 >gi|57640834|ref|YP_183312.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1] gi|62900463|sp|Q5JI54|RSMA_PYRKO RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|57159158|dbj|BAD85088.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1] Length = 279 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 27/277 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +I+ Y + P + +GQNFL+ +I+++ E + + TV+EIG G G LT L A Sbjct: 7 SIIYKYNLHPNRDLGQNFLIVPDIIERNIERAEVGEKDTVLEIGPGLGVLTDPLSKR-AG 65 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV IEKD + IL+ + +EII+ DALKV++ +F ++++NLPY I + Sbjct: 66 KVYAIEKDCRIVEILRR--EYNWPNVEIIEGDALKVEWPEF------NKMVSNLPYQISS 117 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F +S + +E L+FQ E ER+ A+ +Y RLS++ + +A ++ I Sbjct: 118 PVTFKLLSRE-----FERAVLIFQLEFAERMVAKPGDKNYSRLSLMVRAKARAELVERIG 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----G 246 F+P PKV S V+ P P ++ + + + F RR T+ +LK+ Sbjct: 173 KGAFWPRPKVDSAVVVLEPK--PPEERIDLNENLVKALFQHRRSTVSAALKKSAHMLGLS 230 Query: 247 ENLLHQAG------IETNLRAENLSIEDFCRITNILT 277 ++ + + R LS ED I L Sbjct: 231 KDKARELRQVFSRVPHSERRVFQLSPEDVLEIEEFLK 267 >gi|303312255|ref|XP_003066139.1| dimethyladenosine transferase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105801|gb|EER23994.1| dimethyladenosine transferase, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040136|gb|EFW22070.1| dimethyladenosine transferase [Coccidioides posadasii str. Silveira] Length = 379 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 14/237 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L A+KVI +E Sbjct: 32 FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVEL 90 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P RLE++ D +K D F I+N PY I + L F Sbjct: 91 DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLSV K + + + F Sbjct: 145 LLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFK 201 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P V S+V+ +P + + + AF ++ KTLR S LG ++L Sbjct: 202 PPPAVESSVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVLSML 256 >gi|225563099|gb|EEH11378.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces capsulatus G186AR] gi|240279925|gb|EER43430.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces capsulatus H143] Length = 384 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 20/256 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E Sbjct: 32 FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P RLE++ D +K D F I+N PY I + L F Sbjct: 91 DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + P L+FQ+E R+ A+ Y RLSV + + + + F Sbjct: 145 LLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFK 201 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P V S+V+ +P + + + AF ++ KT+R S LG ++L +E Sbjct: 202 PPPAVESSVVRIVPKNPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLD--MLE 257 Query: 257 TNLRA----ENLSIED 268 +N R N+ +ED Sbjct: 258 SNYRTWCAQNNIPVED 273 >gi|317027289|ref|XP_001400595.2| dimethyladenosine transferase [Aspergillus niger CBS 513.88] Length = 387 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 12/246 (4%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + ++I + + V+EIG G GNLT +L A+KVI +E D + Sbjct: 38 LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILEQ-AKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RL++I D +K D F I+N PY I + L F ++ Sbjct: 97 EVTKRVQGTPAQKRLDVILGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLATSP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 151 AP---RICVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S+V+ +P + + + F ++ KT+R S + +A T Sbjct: 208 SSVVRLVPKNPRPQINYDEWDGLLRILFVRKNKTIRSSFLGKSTVMDMLEANYRTWCAQN 267 Query: 263 NLSIED 268 ++ +ED Sbjct: 268 DIPVED 273 >gi|224001108|ref|XP_002290226.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335] gi|220973648|gb|EED91978.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I P +GQ+FL + ++ I +G +++EIG G GN+T LL ++ V+ IE Sbjct: 49 IAPNTSLGQHFLKNPAVVTAIVAKAGLKPTDSILEIGPGTGNMTVPLLQQ-SKSVVAIEY 107 Query: 79 DQQFF-PILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +LK + R L++IQ DA+K F FF++ +AN+PY I + L+F Sbjct: 108 DTRMVREVLKRVEGTSEERKLKVIQGDAIKTRFP-FFDVC-----VANVPYQISSALVFK 161 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + ++FQ+E R+TA+ Y RLSV T K + + + F Sbjct: 162 LLSHR---PMFRCAVMMFQEEFALRLTARPGEALYCRLSVNTQLLAKVDQLMKVGRNNFR 218 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S V+ P P + + F ++ KTLR L +L + Sbjct: 219 PPPKVESRVVRIELRNPPPPVNFTEWDGMIRLLFNRKNKTLRSVLMTKPTIKMLDE 274 >gi|253745520|gb|EET01398.1| Dimethyladenosine transferase [Giardia intestinalis ATCC 50581] Length = 319 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 14/252 (5%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 K GQ+ L + ++K I E + TV+EIG G GNLT LL A+ VI I Sbjct: 2 QGFELTKQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAI 60 Query: 77 EKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D + LK + P + II D K+ + ++N PYNI + + Sbjct: 61 EIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMPATEIPTFD---LCVSNCPYNISSGI 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + P + L+FQ E +R+ A+ Y RL+V T +K ++ +S + Sbjct: 118 VFRLLEIQPLPRKF---VLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRN 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P P V S V+ P P L+ +T+ F K+ KTL K + L Sbjct: 175 SFKPPPNVDSAVVEMYPIGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTKSLLDDLANN 234 Query: 254 GIETNLRAENLS 265 + R E +S Sbjct: 235 MV----RLEEIS 242 >gi|82753583|ref|XP_727737.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL] gi|23483724|gb|EAA19302.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii] Length = 394 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D + Sbjct: 48 KKHGQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTIKLLPL-AKKVITIDIDARM 106 Query: 83 FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + N LE+ + DA+K F KF AN+PY I + L+F I+ Sbjct: 107 ISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF------DVCTANIPYKISSPLIFKLIAHR 160 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+FQKE ER+ A +Y RL+V + + ++ F P PKV Sbjct: 161 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 217 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S V+ IP N + + + F ++RKTL KR N+L Sbjct: 218 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 268 >gi|325093055|gb|EGC46365.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces capsulatus H88] Length = 384 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 20/256 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E Sbjct: 32 FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P RLE++ D +K D F I+N PY I + L F Sbjct: 91 DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + P L+FQ+E R+ A+ Y RLSV + + + + F Sbjct: 145 LLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFK 201 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P V S+V+ +P + + + AF ++ KT+R S LG ++L+ +E Sbjct: 202 PPPAVESSVVRIVPKNPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLN--MLE 257 Query: 257 TNLRA----ENLSIED 268 +N R N+ +ED Sbjct: 258 SNYRTWCAQNNIPVED 273 >gi|149239484|ref|XP_001525618.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL YB-4239] gi|146451111|gb|EDK45367.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL YB-4239] Length = 329 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI E Sbjct: 30 FKFNTNLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQ-ARKVIASEM 88 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K + F I+N PY I + L+F Sbjct: 89 DPRMAAELTKRVHGTPQEKKLEILLGDFMKTELPYF------DICISNTPYQISSPLVFK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 143 LLNQPNPP---RVSILMFQREFAMRLVARPGDELYCRLSANVQMWANVTHIMKVGKNNFR 199 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ + + F ++ KT+ K L ++L + Sbjct: 200 PPPKVESSVVRIEIKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSLNVIDILEK 255 >gi|255948106|ref|XP_002564820.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591837|emb|CAP98092.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255] Length = 386 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 109/260 (41%), Gaps = 12/260 (4%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + I I E + V+EIG G GNLT +L A Sbjct: 23 KTKAAHSIFKMNTDIGQHVLKNPGIAAAIVEKAELKQSDVVLEIGPGTGNLTAKILE-KA 81 Query: 71 RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +K I +E D + + P RLE+I D +K + F I+N PY Sbjct: 82 KKCIAVELDPRMAAEVTKRFQSTPYQKRLEVILGDVMKTELPYF------DVCISNTPYQ 135 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ P S L+FQ+E R+ A+ Y RLSV K + Sbjct: 136 ISSPLTFKLLATSPAP---RSCILMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIM 192 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + + F P P+V S+VI +P E + + F ++ KTLR S Sbjct: 193 KVGKNNFKPPPQVESSVIRMVPKNPRPQVNYEEWDGLLRIVFVRKNKTLRSSFIGTSSIM 252 Query: 249 LLHQAGIETNLRAENLSIED 268 L +A T ++ +ED Sbjct: 253 ELLEANYRTWCAQNDIPVED 272 >gi|294102068|ref|YP_003553926.1| dimethyladenosine transferase [Aminobacterium colombiense DSM 12261] gi|293617048|gb|ADE57202.1| dimethyladenosine transferase [Aminobacterium colombiense DSM 12261] Length = 276 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 7/268 (2%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + K +GQNFL D NIL +I + + + ++EIGAG G LT+ L ++ Sbjct: 1 MKDQTFKHKSSLGQNFLTDRNILGQIVKWAAIDESDILLEIGAGQGVLTRELALSPCSRI 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D+ L + + RL II DDA+ D+E ++P +++AN+PYNI T L Sbjct: 61 FALEIDKTLHTHLDPLEEEFRPRLSIIWDDAVTFDYETKL-PAAPTKVVANIPYNITTPL 119 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 ++ + A S+ L+ Q+E R+ A N+ L + + ++ + P Sbjct: 120 IWRLLEAFA-GKGLHSMILMVQREAALRLNASPNTKDRYPLGITLEIMGERKILRKVPPQ 178 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----N 248 F+P P V S VI N ++ + + + +F +RRKTL S R G + Sbjct: 179 AFYPQPAVDSAVIEIKVQRNFDLPRQKNWRTLLRASFAQRRKTLINSASRNGVSKNHLID 238 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276 +LRAENL+ + + + ++L Sbjct: 239 AFSALHFNPSLRAENLTGKQWLELWHML 266 >gi|283768668|ref|ZP_06341580.1| dimethyladenosine transferase [Bulleidia extructa W1219] gi|283105060|gb|EFC06432.1| dimethyladenosine transferase [Bulleidia extructa W1219] Length = 249 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 16/257 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D I K++AE + V+E+G G G+LT+ L + A+KVI E D +L D Sbjct: 1 MDPVITKRVAEEAN--ADGMVLEVGPGIGSLTEQLAYV-AKKVIAYEIDLGLKKVLTDHF 57 Query: 91 SQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + N ++I D LKVD E + + + ANLPY I + +LF + + Sbjct: 58 ASFEN-VDIQFQDFLKVDLHEKVEDWKKQYGKVVVCANLPYYITSAVLFKVFAEEK---- 112 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 E++T++ QKEVG+R A N Y LSV + +F + F PSPKV S +I Sbjct: 113 IETITVMVQKEVGDRFHAMVNDHEYSALSVEGQSYYEVKKLFTVPGRSFNPSPKVDSVII 172 Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAE 262 F E+ + FG+RRKT+R +L++ + L + I+ R + Sbjct: 173 QFQRKEVTPSFDREAYFGFIRNCFGQRRKTIRNNLQKNFSNEEIDKALQKCEIDPGQRPQ 232 Query: 263 NLSIEDFCRITNILTDN 279 +LS+ + + +L + Sbjct: 233 SLSVLQYQSLFEVLYER 249 >gi|292659595|pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. gi|292659596|pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And Methanocaldococcus Jannaschi Dim1 gi|292659597|pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And Methanocaldococcus Jannaschi Dim1 gi|292659598|pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Methionine And Methanocaldococcus Jannaschi Dim1 Length = 295 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 28/278 (10%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VI Sbjct: 20 HMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVI 78 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D+ P + + N +EII DALKVD K +++ANLPY I + + F Sbjct: 79 EIDKSLEPY-ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFK 133 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I ++ L++Q E +R+ A + YGRLSV R ++ + P F+ Sbjct: 134 LIKRG-----FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFY 188 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL-------------- 241 P PKV S ++ P+ E+ + F R K++R++L Sbjct: 189 PKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEM 248 Query: 242 KRLGGENLLHQAGIET--NLRAENLSIEDFCRITNILT 277 K++ + L + I+ N + LS++D ++N Sbjct: 249 KKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFY 286 >gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera] Length = 383 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 12/223 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I S TV+EIG G GNLT LL A++V+ +E D + Sbjct: 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLL-QAAQRVVAVELDARM 108 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ ++H ++L +I DALK DF +F ++AN+PY I + L+ + Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S TLL QKE R+ A + RL+V + + D+S F P PK Sbjct: 163 ANP---FRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S+V+ P L T+ F K+ KTL + K Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFKH 262 >gi|328792787|ref|XP_001121333.2| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Apis mellifera] Length = 343 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 139/288 (48%), Gaps = 26/288 (9%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S+K +L Y++ K + QNF+L+ N+ KI + +G+L+ V+EIG GPG LT+ + Sbjct: 8 PLPSIKDVLKIYRLRAMKELSQNFILNQNLADKIIKKTGNLNDCHVLEIGPGPGALTRSI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------- 113 L +K+IV+EKD++F P L+ ++ ++EII DD +K++ F Sbjct: 68 LKCQPKKLIVVEKDKRFEPTLEMLADAFETINGKMEIIFDDIMKINMSNLFPSTEIKAWT 127 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168 I++I NLP+N+ T L+ + A D W +TL FQKEV ER+ AQ Sbjct: 128 EKCPRIKLIGNLPFNVSTPLIIKLLHAISEKRDAWTFGKTRMTLTFQKEVAERLIAQPLD 187 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227 RLSV+ T + F I F P PKV ++ F+P P +K+T+ Sbjct: 188 VQRCRLSVMAQAWTHPVLHFIIPGTAFIPKPKVDVGLVTFVPLTIPRTKHEFSIFEKVTR 247 Query: 228 EAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIE 267 F R+K + ++ L + + + R L+IE Sbjct: 248 HIFSFRQKYGIRGVETLFPLEYRTELAQMMYKLSDLNPQTRPVELTIE 295 >gi|219851214|ref|YP_002465646.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c] gi|219545473|gb|ACL15923.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 81/268 (30%), Positives = 125/268 (46%), Gaps = 24/268 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D + +I E +G DG +V+EIG G G LT+ LL GA V IE D+ L Sbjct: 7 QHFLVDQRAIDRIIECAGV-DGKSVLEIGPGEGVLTRALLDAGA-TVSAIEVDRTLIAHL 64 Query: 87 KDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 D L +I+ DA + F F ++ANLPY+I + + F + D Sbjct: 65 TDRFVDEIRSGFLTLIEGDAARCPFPPF------EVMVANLPYSISSPITFRLLDTD--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + S L++Q+E R+ A + GRLSV+ F +SP F P P V S Sbjct: 116 --FSSAVLMYQREFAARMAAPVGTSGCGRLSVMVQTYALVEECFTLSPFSFNPPPAVDSM 173 Query: 205 VIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLK-RLGGENLLHQAGIET----- 257 V+ P+ P S+ + + F +RRKT+R LK +G AG+ Sbjct: 174 VVRIRPYGPIFPITDRSVYAAVVRILFSQRRKTVRNGLKGGIGIYGKPAIAGVIEALPEE 233 Query: 258 --NLRAENLSIEDFCRITNILTDNQDIA 283 R + L +ED+ I N++++ ++ Sbjct: 234 ILGARPQTLYLEDYATIANLVSERSGLS 261 >gi|91200585|emb|CAJ73634.1| similar to dimethyladenosine transferase KsgA [Candidatus Kuenenia stuttgartiensis] Length = 310 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 28/290 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L+ + + ++ K GQ+ L+D NIL IA S+ V+EIG G G+LT+ L Sbjct: 14 LRKLFARKGVVLNKKYGQHILIDQNILSYIANSASLQKDDVVLEIGTGTGSLTRYLAEKA 73 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL------------KVDFEKFFNISS 117 V +E D + F + +I + N + II D L ++ N + Sbjct: 74 CH-VFTVEIDSKLFDLSSEILKFYKN-ITIINADILQSKHKLNAEIVTRISGWLATNNHT 131 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++NLPYNI T ++ N + +D + L+ QKE+ ER+TA S YG LSV+ Sbjct: 132 AFKVVSNLPYNISTPVIINLLESDLP---ISLMVLMLQKEITERLTAAPGSREYGILSVI 188 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRR 234 T ++ +M + P VF+P P+V+S ++ H KI F RR Sbjct: 189 TQLFSEVELMKTLPPEVFWPRPEVSSAIVKMSVHRAKYANKITDYPFFIKIIYAIFTSRR 248 Query: 235 KTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 KTL S+++L + +L + N+R E L E +T L Sbjct: 249 KTLLNSIEKLKLPGVSRSELKRILAAMQLNENIRGEMLDPEQLIHLTESL 298 >gi|225453766|ref|XP_002270274.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera] Length = 335 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 24/291 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + H+ L+ P+K +GQ+++L+ +I +++A+++ DG ++EIG G G+LT + Sbjct: 47 DDYHATLDALNSKGRTPRKSLGQHYMLNSSINEQLADTADIRDGDVILEIGPGTGSLTNV 106 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113 LL GA V+ IEKD ++++ + +RL+++Q+D +K Sbjct: 107 LLDAGA-TVLAIEKDAHMAALVRERFAVT-DRLKVLQEDFMKCHIHPHLFSLLESKKAKN 164 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYG 172 S ++++N+P+NI T ++ + + + LL Q E R+ A + Y Sbjct: 165 KESRYAKVVSNIPFNISTDVVKILL---PMGDIFSEVVLLLQDETALRLVEASLRTQEYR 221 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEA 229 +++ + + F + FFP P V + V+ F P ++S + A Sbjct: 222 PINIFVNFYSDPEYKFKVPRTNFFPQPNVDAAVVVFKLKQAVDYPPVSSIKSFFSLVNSA 281 Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 F +RK LR+SL+ + E L G+ R E L+++DF R+ N++ Sbjct: 282 FNGKRKMLRRSLQHICTSIEIEEALRNVGLPATSRPEELTLDDFVRLHNLI 332 >gi|268529208|ref|XP_002629730.1| Hypothetical protein CBG00961 [Caenorhabditis briggsae] gi|187038646|emb|CAP22289.1| hypothetical protein CBG_00961 [Caenorhabditis briggsae AF16] Length = 308 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 114/278 (41%), Gaps = 42/278 (15%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E S TV+E+G G GNLT +L + A+ VI E D + Sbjct: 29 GQHILKNPGVVNAIVEKSALKSTDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87 Query: 86 LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +K P +L++ D +K ++ FF++ +ANLPY I + + + Sbjct: 88 VKKRVMGTPLQTKLQVNGGDVMKQEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ Y RLSV K M+ + F P PKV S Sbjct: 142 PRY---AVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------------------- 242 V+ P P P + + + F ++ KTL + Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTLLAIFRLSNVIEVIEDNYRKVCSMKNK 258 Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRI 272 + E L +G N RA + +EDF + Sbjct: 259 PLPKDFNMKKLIEETLTASGYAEN-RARKMRVEDFLAL 295 >gi|290974683|ref|XP_002670074.1| predicted protein [Naegleria gruberi] gi|284083629|gb|EFC37330.1| predicted protein [Naegleria gruberi] Length = 318 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 141/303 (46%), Gaps = 47/303 (15%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y + K + QNFLL+L++ KI G + TVIEIG GPG LT+ +L +++IV+ Sbjct: 2 YGLQASKQLSQNFLLNLHVTDKIVRVCGDISNKTVIEIGPGPGCLTRSILQANPKRLIVV 61 Query: 77 EKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFF--------------NISSPIRI 121 EKD++F P L+++ ++ I+Q D LKVD K + + + Sbjct: 62 EKDERFMPALQNLQQSVDDGKMHIVQGDILKVDQFKLVDHFLEKDEKVLKNSDELANVVF 121 Query: 122 IANLPYNIGTRLLFNWISADTWPPFW------ESLTLLFQKEVGERITAQKNSPHYGRLS 175 I NLP+ I T LL NW+ + L+FQKEVG R++A+ ++ +GRLS Sbjct: 122 IGNLPFGIATPLLINWLKDCANGTGAFAFGKKIPMVLMFQKEVGLRMSAKNSTKEFGRLS 181 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFG 231 V + MF ++ F P+PKV ++V+ IP P+ E L++ + F Sbjct: 182 VSSQSVCDVEHMFVVNAKSFVPAPKVDASVMRLIPKTTPLIDNSLVQFEDLEQFCRIIFN 241 Query: 232 KRRKTLRQSLKRLGGENL---------------LHQAGIETNLRAENLSIED-------F 269 +RK L +L + + R+++L++E+ F Sbjct: 242 GKRKQLNTNLSSYFSPKQCAYIAAGAVEGGSKNMDSVNAVLSQRSQDLTVEEITSMARRF 301 Query: 270 CRI 272 R+ Sbjct: 302 VRL 304 >gi|254568850|ref|XP_002491535.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase) [Pichia pastoris GS115] gi|238031332|emb|CAY69255.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase) [Pichia pastoris GS115] gi|328351956|emb|CCA38355.1| dimethyladenosine transferase [Pichia pastoris CBS 7435] Length = 328 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + TV+E+G G GNLT +L ARKVI E Sbjct: 33 FKFNTQLGQHILKNPLVAQGIVDKANIRPSDTVLEVGPGTGNLTMRIL-QKARKVIASEM 91 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +L+II D +K D F I+N PY I + L+F Sbjct: 92 DPRMAAELTKRVQGKPEQKKLDIILGDFIKQDLPYF------DICISNTPYQISSPLVFK 145 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLSV T + + + F Sbjct: 146 LLNQPKPP---RVAILMFQREFALRLLARPGDSLYCRLSVNVQMWANVTHIMKVGRNNFR 202 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ +T+ K +L + Sbjct: 203 PPPQVESSVVRIEVKNPRPNIDFNEWDGLLRICFVRKNRTISAGFKNKSVIEILEK 258 >gi|258574477|ref|XP_002541420.1| dimethyladenosine transferase [Uncinocarpus reesii 1704] gi|237901686|gb|EEP76087.1| dimethyladenosine transferase [Uncinocarpus reesii 1704] Length = 349 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 14/237 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L A+KV+ +E Sbjct: 32 FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVVAVEL 90 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P RLE++ D +K D F I+N PY I + L F Sbjct: 91 DPRMAAEVTKRVQGTPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLSV K + + + F Sbjct: 145 LLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFK 201 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P V S+V+ +P + + + + AF ++ KTLR S LG ++L+ Sbjct: 202 PPPAVESSVVRIVPKVPRPDISYDEWDGLLRVAFVRKNKTLRSSF--LGTSSVLNML 256 >gi|126276136|ref|XP_001387199.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) [Scheffersomyces stipitis CBS 6054] gi|126213068|gb|EAZ63176.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) [Pichia stipitis CBS 6054] Length = 323 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + +G V+E+G G GNLT +L ARKV+ +E Sbjct: 30 FKFNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 88 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K D F I+N PY I + L+F Sbjct: 89 DPRMAAELTKRVHGTPQQKKLEILLGDFMKTDLPYF------DVCISNTPYQISSPLVFK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 143 LLNQPRPP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFR 199 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ KT+ K +L + Sbjct: 200 PPPQVESSVVRIEVKTPRPNIDFHEWDGLLRIVFVRKNKTIAAGFKSNNVIEILEK 255 >gi|119193222|ref|XP_001247217.1| hypothetical protein CIMG_00988 [Coccidioides immitis RS] Length = 346 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 14/230 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + + + I + + V+E+G G GNLT +L A+KVI +E D + Sbjct: 6 GQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAAE 64 Query: 86 LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + P RLE++ D +K D F I+N PY I + L F ++ Sbjct: 65 VTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLATTPA 118 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P L+FQ+E R+ A+ Y RLSV K + + + F P P V S Sbjct: 119 P---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVES 175 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 +V+ +P + + + AF ++ KTLR S LG ++L Sbjct: 176 SVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVLSML 223 >gi|297626914|ref|YP_003688677.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922679|emb|CBL57256.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N , N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 289 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 17/280 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S++ + + P K +GQNF++D N +++I + V+E+G + L Sbjct: 10 PTSVRRHANAINLRPTKTLGQNFVVDANTVRRIVSLADVGPEDEVLEVGP-GLGSLTLGL 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122 A V +E D L ++H RL ++ DDAL+V + +P R++ Sbjct: 69 LASAAGVTAVEIDPVLAAQLPLTVAEHQPDRAGRLRVVTDDALRV---ESLPGPAPTRLV 125 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + W + ++ Q EV +R+ A S YG S W Sbjct: 126 ANLPYNVAVPVLLHMLERFA---SWRAGLVMVQLEVADRLVATPGSRTYGVPSAKLAWYA 182 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241 +A + P VF+P P V S ++ P E + + AF +RRK LR +L Sbjct: 183 EAHKAGTVPPSVFWPVPNVESGLVAIQRREPPATSASREQVFAVIDAAFAQRRKMLRSAL 242 Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 R+ G + AGI+ +R E L I F I L Sbjct: 243 ARIVGSSAAASAAIEAAGIDPTVRGEALDIAAFAAIAEQL 282 >gi|15669218|ref|NP_248023.1| dimethyladenosine transferase [Methanocaldococcus jannaschii DSM 2661] gi|27151565|sp|Q58435|RSMA_METJA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|1591684|gb|AAB99033.1| dimethyladenosine transferase (ksgA) [Methanocaldococcus jannaschii DSM 2661] Length = 275 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 28/276 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE Sbjct: 2 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P + + N +EII DALKVD K +++ANLPY I + + F I Sbjct: 61 DKSLEPY-ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLI 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ L++Q E +R+ A++ + YGRLSV R ++ + P F+P Sbjct: 116 KRG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPK 170 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--------------KR 243 PKV S ++ P+ E+ + F R K++R++L K+ Sbjct: 171 PKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKK 230 Query: 244 LGGENLLHQAGIET--NLRAENLSIEDFCRITNILT 277 + + L + I+ N + LS++D ++N Sbjct: 231 ILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFY 266 >gi|219125196|ref|XP_002182872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405666|gb|EEC45608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 281 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 129/275 (46%), Gaps = 23/275 (8%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDG------ITVIEIGAGPGNLTQMLLTL-GARK 72 PK+ +GQN+L D N + KI + ++E+G G G LT L+ GA Sbjct: 10 KPKQSLGQNYLKDPNTVAKILRTFHQDATKHRPSVERILELGPGAGALTDRLVETYGAAN 69 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGT 131 + IE D++ IL++ +HP L + D ++V + P+ +I NLPY I + Sbjct: 70 MQAIELDERSVQILRE---KHPG-LRVQHADVMQVSYADLAEAEGQPLVVIGNLPYYITS 125 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++LF ++ + S T+ Q EVG+R+ A +++ YG LSV+ T F I Sbjct: 126 QILF-ALADASHAGAVHSATVTMQWEVGQRMVAARSTKDYGILSVVFQLYADVTCHFKIP 184 Query: 192 PHVFFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 P VF+P PKV S +I L+++ F +RRKT+R SLK+L Sbjct: 185 PTVFYPKPKVDSALIGLHFLGPARLRQRLAGVRPADLRRVVTSTFQQRRKTVRNSLKKLC 244 Query: 246 GENLL---HQAGIE-TNLRAENLSIEDFCRITNIL 276 + + + + R E LS F IT +L Sbjct: 245 QGDEFSIQQELPEDWASKRPEELSPGQFIEITRLL 279 >gi|134057541|emb|CAK48895.1| unnamed protein product [Aspergillus niger] Length = 319 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 13/231 (5%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+ L + + ++I + + V+EIG G GNLT +L A+KVI +E D + Sbjct: 38 LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILEQ-AKKVIAVELDPRMAA 96 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + P RL++I D +K D F I+N PY I + L F ++ Sbjct: 97 EVTKRVQGTPAQKRLDVILGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLATSP 150 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L+FQ+E R+ A+ Y RLSV K + + + F P P V Sbjct: 151 AP---RICVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGGENLLHQ 252 S+V+ +P + + + F ++ KT+R S L + ++L Sbjct: 208 SSVVRLVPKNPRPQINYDEWDGLLRILFVRKNKTIRSSFLGKSTVMDMLEA 258 >gi|71894379|ref|YP_278487.1| dimethyladenosine transferase [Mycoplasma synoviae 53] gi|119365036|sp|Q4A645|RSMA_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|71851167|gb|AAZ43776.1| dimethyladenosine transferase [Mycoplasma synoviae 53] Length = 259 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 13/267 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++H KK +GQNFL D NI+ KI + V+EIG G G+LT+ LL A+KV Sbjct: 1 MNHLDKNAKKSLGQNFLRDKNIINKIVNVFNI-ENEKVLEIGPGQGDLTKELLK-KAKKV 58 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + E D+ LK+ E+ D L V+ + ++AN+PY I + + Sbjct: 59 LAFEIDKSLIEHLKNEIKDL--HFELRDQDFLNVNLND--DEFKDYYVVANIPYYITSDI 114 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + ++ + L+ QKEV +RI AQKNS +Y +LS+ + + + F ++ + Sbjct: 115 LLKIYRSFWN---FKGIVLMVQKEVAQRIVAQKNSKNYSKLSISSQYLADVKIEFIVNKN 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK----TLRQSLKRLGGENL 249 F P+PKV S VI N LE + K F RRK TL ++ + Sbjct: 172 SFIPAPKVDSAVISLKFKDNIDKENLEKMLKFFLVCFANRRKKLTFTLNRNFNSTKVKLA 231 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 + + N R + L + + L Sbjct: 232 YEKLNLSDNARIQELDVSQIVLLFTYL 258 >gi|294461690|gb|ADE76404.1| unknown [Picea sitchensis] Length = 390 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 12/223 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +LK I + +G + TV+EIG G GNLT LL AR+VI +E D + Sbjct: 73 KSRGQHILTNPRVLKSIVDKAGVRETDTVLEIGPGTGNLTLELL-QAARRVIAVEIDPRM 131 Query: 83 FPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + RLE+++ D L+ D F +AN+PY I + L+F +S Sbjct: 132 IEAVHKRVQGTEMAQRLELVRGDILRTDLPSF------DICVANIPYQISSPLIFKLLST 185 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + + TL+ QKE G R+ A+ + RL+V A ++ D+S F P PK Sbjct: 186 M---PKFRNATLMLQKEFGRRLVAKPGDSLFNRLAVNVDLLASAKLLMDVSKRDFTPCPK 242 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S+V+ P P P L + T F ++ KTL ++ Sbjct: 243 VDSSVVRIEPRAWPPPVDLSEWNRFTLMCFTRKNKTLGAIFRQ 285 >gi|283851060|ref|ZP_06368344.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B] gi|283573456|gb|EFC21432.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B] Length = 289 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 12/262 (4%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 PK+ +GQNFL D N +I + G TVIEIG G G L+ +L G R +V+EKD Sbjct: 31 RPKRSLGQNFLQDPNTAARIVANLGITPADTVIEIGPGRGALSGHILDAGPRAYLVVEKD 90 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + L + HP + DAL++D+ + ++ +++I NLPYNI + LL++ + Sbjct: 91 RDLAARLA---ASHPGA-NVALADALRLDWSRIDRLAD-VKLIGNLPYNIASPLLWDISA 145 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + Q EV R+ A YG L+ ++ F + P VF P P Sbjct: 146 GAC---LFRRGVFMVQHEVALRLAAAPGGRAYGALTAWVAGFSRVQYCFKVPPTVFRPQP 202 Query: 200 KVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGI 255 KV S V+ P P ++L K+ + F RRK L LKR+ +++ G+ Sbjct: 203 KVDSAVVALTPLPAGERPADPKALSKLLKLLFSLRRKQLGHILKRVWDDDVAAYFAGQGL 262 Query: 256 ETNLRAENLSIEDFCRITNILT 277 ++ R ENLS + + +L Sbjct: 263 DSRDRPENLSPQQLSGLATLLK 284 >gi|325179921|emb|CCA14323.1| dimethyladenosine transferase putative [Albugo laibachii Nc14] Length = 311 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 12/233 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P +GQ+FL + I +I + +E+G G GNLT +L A+KVI +E D Sbjct: 29 PNTSIGQHFLKNPMIAAQIVSKAALRSTDVCLEVGPGTGNLTMKILNQ-AKKVIAVEYDL 87 Query: 81 QFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + ++ +H L++I D ++V FF++ IANLPY I + +F + Sbjct: 88 RMIAEIQKRVQNTEHAKHLQVIHGDVIRVQLP-FFDVC-----IANLPYQISSPFVFKLL 141 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + ++FQ+E +R++A+ Y RLSV T K + + + F P Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDQLYCRLSVNTQLLAKVDQLIKVGKNNFRPP 198 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 PKV S V+ P P P + + F ++ KTLR +L Sbjct: 199 PKVESRVVRIEPRNPPPPVNFVEWDGMIKILFNRKNKTLRACFLTKPVLKMLE 251 >gi|221060378|ref|XP_002260834.1| dimethyladenosine transferase [Plasmodium knowlesi strain H] gi|193810908|emb|CAQ42806.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain H] Length = 384 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ V+EIG G GNLT LL + A+KVI I+ D + Sbjct: 63 KKHGQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDIDARM 121 Query: 83 FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + N LE+ + DA+K F +F AN+PY I + L+F I+ Sbjct: 122 VSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF------DICTANIPYKISSPLVFKLIAHR 175 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+FQKE ER+ A +Y RL+V K + ++ F P PKV Sbjct: 176 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCKVIKICNVDRSSFNPPPKV 232 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S ++ IP N + + + F ++RKTL KR N+L Sbjct: 233 DSVILKLIPKENNFFVNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 283 >gi|289193112|ref|YP_003459053.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22] gi|288939562|gb|ADC70317.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22] Length = 274 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 12/224 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQ FL+D N +KK ES+ V+EIG G G LT+ L A+KV VIE Sbjct: 2 FKPKKKLGQCFLIDKNFVKKAVESAEITKDDIVLEIGLGKGILTEELAK-NAKKVYVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P + + N +EII DALKV+ ++ +++ANLPY I + + F I Sbjct: 61 DKSLEPYANKLKENY-NNIEIIWGDALKVNLDEL----DFNKVVANLPYQISSPITFKLI 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ L++Q E R+ A++ + YGRLSV R ++ + P F P Sbjct: 116 KKG-----FDLAVLMYQYEFARRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPTAFSPR 170 Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSL 241 PKV S ++ P+ N + + F R K++R++L Sbjct: 171 PKVYSAIVKIKPNKNKYHIENEDFFDDFLRTIFQHRNKSVRKAL 214 >gi|291287761|ref|YP_003504577.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809] gi|290884921|gb|ADD68621.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809] Length = 267 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 9/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ+FL + IAES S + ++EIG G G LT +L GA V +E D+ Sbjct: 16 KKKFGQHFLTSKQFIDMIAESLASAECRQIVEIGPGCGVLTHAMLEKGA-SVTAVEIDED 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + ++I D + + ++ + I NLPYN+ +L + + Sbjct: 75 LAEFLPRYLFIYKG-FKVINADFMLITEDQLPD--GKIAFAGNLPYNVSVDILMHCVK-- 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + E +T +FQKEV +RI A+ N+ Y LSV+T + + + DIS F+P+ KV Sbjct: 130 -FFHKIEKMTFMFQKEVADRINAKPNNKEYTSLSVITSYFFEKKKLKDISGGQFWPNTKV 188 Query: 202 TSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRL-GGENLLHQAGIETNL 259 STV+ F P E + +F +RKTL +LK + +AG+ N+ Sbjct: 189 RSTVLEFYPKERHFSAEKELRFLSFVKNSFMMKRKTLHNNLKSYPNHLEAMEKAGLAANI 248 Query: 260 RAENLSIEDFCRITNIL 276 R E + ++DF R+ + Sbjct: 249 RGEQMELKDFIRLFEEI 265 >gi|68467333|ref|XP_722328.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|68467562|ref|XP_722214.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|46444170|gb|EAL03447.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|46444295|gb|EAL03571.1| likely dimethyladenosine transferase [Candida albicans SC5314] gi|238878254|gb|EEQ41892.1| dimethyladenosine transferase [Candida albicans WO-1] Length = 326 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI +E Sbjct: 30 FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEM 88 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K D F I+N PY I + L+F Sbjct: 89 DPRMAAELTKRVHGTPQEKKLEILLGDFMKTDLPYF------DICISNTPYQISSPLVFK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E +R+ A+ Y RLS T + + + F Sbjct: 143 LLNQPRPP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFR 199 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ KT+ K +L + Sbjct: 200 PPPQVESSVVRIEIKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSSNVIEILEK 255 >gi|148886596|sp|Q4A936|RSMA_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|144227742|gb|AAZ44735.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae J] Length = 259 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 122/263 (46%), Gaps = 15/263 (5%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 PKK++GQNFL D I +KI E+ +IEIG G G LT LL A+ V E D+ Sbjct: 6 PKKHLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDR 63 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 PIL+ L II +D L IIANLPY I +++LF + Sbjct: 64 NLIPILEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFAN 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FFP PK Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFFPKPK 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256 + S V+ F N E T++ F +RKTL +L + + + Sbjct: 175 INSAVVFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 N+R + L + + R+ + +N Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257 >gi|303275612|ref|XP_003057100.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461452|gb|EEH58745.1| predicted protein [Micromonas pusilla CCMP1545] Length = 274 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 29/279 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++++GQ+FL+D +++ +++ G +++EIG G GNLT LL+ GA V +EKD+ Sbjct: 1 RRWLGQHFLVDRSVILDALDAADVRAGDSILEIGPGTGNLTAELLSAGA-VVTAVEKDRN 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------------SSPIRIIANLP 126 L + + N L + + D LK + K F +++AN+P Sbjct: 60 LADKLAETFRGNEN-LTVHEADFLKWNVAKAFPEPTDAAAADAALGDGAPRRAKVVANIP 118 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKAT 185 YNI T +L + +E++ +FQ+EV R I Y +SV + ++ Sbjct: 119 YNITTDILKVLL---PMGDTFENMVFMFQEEVARRLIRDDAGGSDYRPMSVRVRYYSEPY 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQSL 241 + +S F P P V S +I F P P+ Q F ++RK L+ ++ Sbjct: 176 YVRPVSAACFDPPPNVESCLIGFRPRRREEYLPLAGTERQFFAFVQTCFAQKRKMLKNNM 235 Query: 242 KRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + + + L RA+ LS+E++ + N + Sbjct: 236 RAACDDDTIRDALATLNRPEKTRAQELSMEEYVELFNFV 274 >gi|319943018|ref|ZP_08017301.1| dimethyladenosine transferase dimethyltransferase [Lautropia mirabilis ATCC 51599] gi|319743560|gb|EFV95964.1| dimethyladenosine transferase dimethyltransferase [Lautropia mirabilis ATCC 51599] Length = 282 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 127/289 (43%), Gaps = 26/289 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M N H +IP+K GQ+FL D + I ++ G ++EIG G G LT Sbjct: 1 MANHRHDAGREKRPAGVIPRKRFGQHFLADRACIDAIVQAIAPRSGDNLVEIGPGTGVLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 L+ + VIE D+ P L +Q+ + L ++Q D L+VDF F +RI+ Sbjct: 61 APLVAQTGH-ITVIEIDRDLGPRLA---AQYGDALTLVQQDVLQVDFSGF---GQNLRIV 113 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPYNI + LL + I+ + QKEV +RI A S GRL+V Sbjct: 114 GNLPYNISSPLLLHLIAVAD---RVRDQHFMLQKEVVDRIVAGPGS-DMGRLTVFLQNHY 169 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + +FD+ P F P PKV S+V+ +P P + L+ A+ +RRK LR++L Sbjct: 170 QVVKLFDVPPEAFDPPPKVDSSVVRMVPLPRPHTTAIAQLEAALAAAYAQRRKMLRRTLG 229 Query: 243 RLGGEN--------------LLHQAGIETNLRAENLSIEDFCRITNILT 277 + L + + R E + + + + L Sbjct: 230 GWLAQQHPSFDLDKAAADDARLVPLT-DLSQRPEQIPATAWYALADALA 277 >gi|295395177|ref|ZP_06805385.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971939|gb|EFG47806.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC 49030] Length = 282 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 134/287 (46%), Gaps = 26/287 (9%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT + +++ + P K GQNF++D N ++ I E + G V+EIG G G+ Sbjct: 1 MT----ARTVREFAHELGLRPTKTRGQNFVIDPNTVRMIVEEAQLTTGEQVVEIGPGLGS 56 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKVDFEKFFNISS 117 LT LL G V +E D+ L +H L +I DDAL V ++ Sbjct: 57 LTLGLLEAG-HPVTAVEIDRLLASRLPRTIDEHAPDAHPLTLINDDALHVTE----LPTT 111 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P ++ANLPYN+ +L +++ P S+ ++ Q EV R+ A S YG SV Sbjct: 112 PTALVANLPYNVAVPVLMHFLET---FPSLNSVLVMVQAEVANRLAATPGSRVYGAPSVK 168 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----KKITQEAFGKR 233 W T DI +VF+P+P V S ++ + H P E L + AF +R Sbjct: 169 AKWYGAVTRGSDIGKNVFWPAPNVGSGLVRIVKHAQPYG--DEELRTATFDVVNAAFAQR 226 Query: 234 RKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275 RKTLRQ+L L G E +L +GI+ R E L I+ F I Sbjct: 227 RKTLRQALAGLLGSGADSEQVLVDSGIDPKTRGEALDIDAFITIART 273 >gi|170595215|ref|XP_001902290.1| Probable dimethyladenosine transferase [Brugia malayi] gi|158590104|gb|EDP28858.1| Probable dimethyladenosine transferase, putative [Brugia malayi] Length = 306 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 12/229 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + I+ I E S TV E+G+G GNLT LL A+KVI E D++ Sbjct: 28 GQHILKNPGIVNAIVEKSAIKSTDTVFEVGSGTGNLTVALLG-KAKKVIACEIDRRMIAE 86 Query: 86 LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 LK N +LE+ Q D +K ++ FF++ +ANLPY I + +F + Sbjct: 87 LKKRVIGTSNQQKLEVRQGDVIKTEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 140 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+FQKE +R+ A+ + Y RLSV + + + + F P PKV S Sbjct: 141 PRY---AVLMFQKEFADRLLAKPGNKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDS 197 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 V+ P P + + + F ++ KTL K + L + Sbjct: 198 AVVRIAPRNPPPQINFQEWDSLLRIIFLRKNKTLLSLFKNNQVCDSLEK 246 >gi|224004354|ref|XP_002295828.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209585860|gb|ACI64545.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 275 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITV--IEIGAGPGNLTQMLLTL-GARKVIV 75 PK+ +GQN+L D N + KI + + + +E+G G G LT +L+ G + Sbjct: 9 FRPKQSLGQNYLRDGNTVAKICRAFATQQKTQLRAVELGPGAGALTDVLVNSIGKPNLQC 68 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134 IE DQ+ +L + + L I D L+ D+ + + P+ II NLPY I +++L Sbjct: 69 IEIDQRSVELLSEKHPE----LRIHHLDVLQADYPQLSIDEKGPLSIIGNLPYYITSQIL 124 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F ++ + S T+ Q EVG RI A YG LSV+ + F I P V Sbjct: 125 F-ALADASHSNAVRSATVTMQYEVGRRIVAPTRCKDYGILSVVFQLYADCKIHFKIPPTV 183 Query: 195 FFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 F+P PKV S +I +L+ + F +RRKT+R L+ L Sbjct: 184 FYPQPKVDSALIGLHFLGPTALRRRLAGVSPSNLRAVVTATFQQRRKTVRNGLRNLALTF 243 Query: 249 LLHQAGIE--TNLRAENLSIEDFCRITNIL 276 L+Q + +++R E L+ F +T +L Sbjct: 244 ALNQELPKNWSSMRPEELTPGQFVEVTRLL 273 >gi|148377319|ref|YP_001256195.1| dimethyladenosine transferase(S-adenosylmethionine-6-N', N'-adenosyl(rRNA)dimethyltransferase) (16S rRNA dimethylase) (high levelkasugamycin resistance protein ksgA) (kasugamycindimethyltransferase) [Mycoplasma agalactiae PG2] gi|148291365|emb|CAL58748.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N' adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High levelkasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Mycoplasma agalactiae PG2] Length = 270 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 124/263 (47%), Gaps = 14/263 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H + KK GQNFL +++KKI + +G +IEIG G G LT+ L+ + K++ Sbjct: 12 DHLQPKAKKKFGQNFLHSDSVIKKIVDIISP-EGKQIIEIGPGTGALTKHLVNKCS-KLV 69 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D L + + ++ DD L + +++ ++ N+PY I + ++ Sbjct: 70 AFEIDPDMIEFLNQQNYFNSENNMLVHDDFLNANLDQYV----YFEVVGNIPYYITSEII 125 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F I ++ TLL QKEV +RI A NS Y +LS+ + K +S + Sbjct: 126 FKLIENR---FLFKRATLLVQKEVADRIVAAPNSYEYSKLSITCQYVAKVKKELFVSKNN 182 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-ENLLHQ- 252 F P PKV S ++ F + N E LK + F RRK L SLK++ E +L+ Sbjct: 183 FSPIPKVDSAIVTFDFYQN-HNDNYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAY 241 Query: 253 --AGIETNLRAENLSIEDFCRIT 273 I N+R + L +E ++ Sbjct: 242 SLLNISENIRIQQLDLETIRQLY 264 >gi|291319987|ref|YP_003515245.1| dimethyladenosine transferase(S adenosylmethionine 6 N', N' adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High levelkasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Mycoplasma agalactiae] gi|290752316|emb|CBH40287.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N' adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High levelkasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Mycoplasma agalactiae] Length = 270 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 14/262 (5%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK GQNFL +++KKI + +G +IEIG G G LT+ L+ K++ E D Sbjct: 17 KAKKKFGQNFLHSDSVIKKIVDIISP-EGKQIIEIGPGTGALTKHLV-NKCTKLVAFEID 74 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L + + ++ DD L + +++ ++ N+PY I + ++F I Sbjct: 75 PDMIKFLNQQNYFNSENNMLVHDDFLNANLDQYA----YFEVVGNIPYYITSEIIFKLIE 130 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ TLL QKEV +RI A NS Y +LS+ + K +S + F P P Sbjct: 131 NR---FLFKRATLLVQKEVADRIVAMPNSYEYSKLSITCQYVAKVKKELFVSKNNFSPVP 187 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-ENLLHQ---AGI 255 KV S ++ F + + E LK + F RRK L SLK++ E +L+ I Sbjct: 188 KVDSAIVTFDFYQDKND-NYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAYSVLNI 246 Query: 256 ETNLRAENLSIEDFCRITNILT 277 N+R + L +E ++ L Sbjct: 247 SENIRIQQLDLETIKQLYAELE 268 >gi|71028934|ref|XP_764110.1| dimethyladenosine transferase [Theileria parva strain Muguga] gi|68351064|gb|EAN31827.1| dimethyladenosine transferase, putative [Theileria parva] Length = 388 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 45/292 (15%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I K GQ+ L + +L KI +++ TV+EIG G GN T L+TL A+KV+ I+ Sbjct: 67 GMIFVKKYGQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAID 125 Query: 78 KDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +K+ Q LE+I+ DAL+ F KF +ANLP+ I + +F Sbjct: 126 VDARMISEVKNRCFQLGYTNLEVIEADALRTTFPKF------DICMANLPFQISSPFIFK 179 Query: 137 WISADTWPPFW--------ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 +S + ES L+FQKE ER+ A N YGRL++ T T + Sbjct: 180 LLSHRPLFRYLFHYYYFALESAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRIC 239 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---- 244 +S F P PKV S V+ +P P+ + + F ++R+TLR K+ Sbjct: 240 KVSAGSFNPPPKVESMVVKIVPREQPLVVDFGEWDGMIRICFSRKRRTLRSLFKKQSVLS 299 Query: 245 ------------------------GGENLLHQAGIETNLRAENLSIEDFCRI 272 +L +G+ R+ +SI +F ++ Sbjct: 300 ILESNYKSWCTINNKVPVVKPFKEFVIEILEGSGL-AERRSITVSIAEFLKL 350 >gi|319936596|ref|ZP_08011010.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1] gi|319808394|gb|EFW04954.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1] Length = 271 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 19/283 (6%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M K + + +L YK+ K GQNFL+DLN +K+I ++ VIEIG G G Sbjct: 1 MKDIAKKSNTQYLLDKYKLQASKKFGQNFLIDLNTIKRIVATTHIDKETCVIEIGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 L++ L A V E D + +LK+ + N +E++ D L VD E+ Sbjct: 61 LSEQLA-YHAGYVRCYEIDTRLKDLLKESLGEFTN-IEVVFQDFLTVDLKKIVEELKQTY 118 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 S + IIANLPY I + +L + I + S+ + QKEV ++T ++ ++ L+ Sbjct: 119 SKVCIIANLPYYITSDILEHIICSQA---SLSSIHAMVQKEVALKLT---DTQYHSPLTF 172 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 + ++ +S +VF P+P+V S +I H L + ++AF ++RKT Sbjct: 173 MIESIGTISLDMHVSRNVFSPAPRVDSAIIAIHIHKEYNIL----LTHLLKQAFTQKRKT 228 Query: 237 LRQSLKRLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276 + +LK + G N +L Q I+ N R E L IED+ ++T L Sbjct: 229 IYNNLKVIFGTNTKYILEQCQIKENKRPEELKIEDYLKLTKYL 271 >gi|222823065|ref|YP_002574638.1| dimethyladenosine transferase [Campylobacter lari RM2100] gi|222538286|gb|ACM63387.1| dimethyladenosine transferase [Campylobacter lari RM2100] Length = 273 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 14/268 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK+ GQNFL D +++ KI ++ D ++EIG G G+LTQ LL + + E Sbjct: 2 IKAKKHFGQNFLCDKSVVDKIIQAI-PKDTKNIVEIGPGLGDLTQELLKIPQAHIRAYEI 60 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALK-VDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D+ PIL E+I +A D + ++ANLPY I T L+ Sbjct: 61 DKDLIPILNKKFQNEIEGGNFELIHQNASDAFDQGSLSDKE--YFLVANLPYYIATNLIL 118 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + L ++ QKEV ++ A + ++ L VL + M+FDI P F Sbjct: 119 KALEDQNCL----GLIVMVQKEVAQKFCANEKESNFSALGVLCALICQRQMLFDIQPQSF 174 Query: 196 FPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLH 251 P PKVTS V+ I H +E+ K+ + F RK L + K + Sbjct: 175 NPPPKVTSAVMKLIKTTHYQQKCENIEAFKEFLRACFQNPRKQLLSNFKNKKEKILKAFE 234 Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279 I + RA +S++ + +I + L D+ Sbjct: 235 ALDISSTSRAHEISVDSYLKIYDYLKDD 262 >gi|257463687|ref|ZP_05628077.1| dimethyladenosine transferase [Fusobacterium sp. D12] gi|317061234|ref|ZP_07925719.1| dimethyladenosine transferase [Fusobacterium sp. D12] gi|313686910|gb|EFS23745.1| dimethyladenosine transferase [Fusobacterium sp. D12] Length = 268 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 84/268 (31%), Positives = 124/268 (46%), Gaps = 17/268 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL IL +I E S ++EIG G G LT++LL A+ V+ IE Sbjct: 3 FQHKKKYGQNFLTKQAEILARILEVSEVQKQDNILEIGPGEGALTELLLQE-AKSVVNIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ PIL+ + N +I D L+VDF K+ +++AN+PY I + ++ Sbjct: 62 IDEDLKPILEKKFGNNEN-YRLIMGDVLEVDFSKYMEEG--TKVVANIPYYITSPIIQKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + P + L+ QKEVGERI A++ L++ + +A +F I F P Sbjct: 119 IEHRSLIP---AAFLMVQKEVGERICAKRG-RERSALTLSVEYFARAEYLFTIPKEYFTP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 PKV S I E K + F +RK L + LG + Sbjct: 175 VPKVDSAFIGIHMKEREEIAKQIPEELFFKYVKAGFWNKRKNLVNNFSSLGFSKTEIKES 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L + GI N RAENLS++++ + L Sbjct: 235 LIKLGIAENERAENLSLQEWFSVIETLE 262 >gi|322699660|gb|EFY91420.1| dimethyladenosine transferase dimethyltransferase [Metarhizium acridum CQMa 102] Length = 390 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 18/246 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 GQ+ L + + I E + TV+EIG G GNLT +L A+K I +E Sbjct: 36 FKFNTNFGQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVEL 94 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE++ D +K + +F I+N PY I + L+F Sbjct: 95 DPRMAAEVTKRVQGTPEQRKLEVVLGDVIKTELPQF------DVCISNTPYQISSPLVFK 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + L+FQ+E R+TA+ P Y R+SV + K T + + + F Sbjct: 149 LLAMPNPP---RTSVLMFQREFALRLTARPGDPLYSRISVNAQFWAKITHIMKVGKNNFR 205 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P P+V S+V+ P + + + + F ++ KTLR S LG +L Sbjct: 206 PPPQVESSVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLT--M 261 Query: 255 IETNLR 260 +E N R Sbjct: 262 VEKNYR 267 >gi|256845838|ref|ZP_05551296.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2] gi|256719397|gb|EEU32952.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2] Length = 264 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 17/270 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL +I E S D ++EIG G G LT +L+ +KV +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N + +I D L++D ++ N +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSSKENYI-LIMGDVLEIDLRRYINQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + +A +F I F P Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTILREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+Q + N RAEN+SI+ F + NI Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264 >gi|115611397|ref|XP_001177234.1| PREDICTED: similar to transcription factor B1, mitochondrial [Strongylocentrotus purpuratus] gi|115613229|ref|XP_791286.2| PREDICTED: similar to transcription factor B1, mitochondrial [Strongylocentrotus purpuratus] Length = 259 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 15/249 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ Y + +K++ QNFLLDL + KI +G+L G V E+G GPG +T+ + Sbjct: 8 PLPTIREIIRLYGLRAEKHLAQNFLLDLKLTDKIVRQAGNLQGAHVCEVGPGPGGITRSI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 + G + ++VIEKD +F P L+ ++ R+ + DD L+V+ F + Sbjct: 68 INRGVQDLLVIEKDTRFIPSLEMLTEATEGRVRVACDDILRVNLADAFPHHIKKDWKDDP 127 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + I+ NLP+N+ L+ W+ + + + L FQKEV ER+TA Sbjct: 128 PNLHIVGNLPFNVSLPLMLRWLESVADRTGPFSFGRTRMLLTFQKEVAERLTAPPGDDQR 187 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230 RLS++ + F I F P P++ V+H P +P I + ++K+ + F Sbjct: 188 SRLSIMAQHLCQVKQCFVIPGAAFVPKPQIDVGVVHLTPLRDPEIDAPFKLVEKLVRSVF 247 Query: 231 GKRRKTLRQ 239 R+K ++ Sbjct: 248 HFRKKYCKR 256 >gi|254167515|ref|ZP_04874367.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] gi|197623778|gb|EDY36341.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] Length = 238 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 117/254 (46%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL++ I I + + V+EIG G G LT LL +V IE D+ Sbjct: 3 RYSQNFLINPKIADYIVKEAEIKPDDIVLEIGPGKGILTDKLLEKC--EVYAIEIDKTLC 60 Query: 84 PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L I + RL +I DALKVDF KF +I+AN+PY+I + LLF + + Sbjct: 61 EYLSIIFQDYIKNGRLHLICGDALKVDFPKF------NKIVANIPYHISSPLLFKILEYE 114 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E L+ Q E ER+ A+ S YGRLSV+ + +A ++ + F P P+V Sbjct: 115 -----FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFKPVPRV 169 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S ++ + + L + ++ F +RRK +R L+ + + R Sbjct: 170 DSAIVKIT-KKDRFCYDKDKLNEFVRKLFEQRRKKIRNILEEVPYGDS----------RV 218 Query: 262 ENLSIEDFCRITNI 275 E LS E+ C + Sbjct: 219 EELSPEEICEVVQY 232 >gi|110590504|pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum gi|110590505|pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum Length = 299 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 111/228 (48%), Gaps = 11/228 (4%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D + Sbjct: 21 GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISE 79 Query: 86 LKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +K + N LE+ + DA+K F KF AN+PY I + L+F IS Sbjct: 80 VKKRCLYEGYNNLEVYEGDAIKTVFPKF------DVCTANIPYKISSPLIFKLISHR--- 130 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 P ++ L+FQKE ER+ A +Y RL++ K T + +++ F P PKV S Sbjct: 131 PLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSV 190 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 ++ IP + + + + F ++RKTL KR N+L Sbjct: 191 IVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 238 >gi|322710252|gb|EFZ01827.1| dimethyladenosine transferase dimethyltransferase [Metarhizium anisopliae ARSEF 23] Length = 388 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 18/246 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 GQ+ L + + I E + TV+EIG G GNLT +L A+K I +E Sbjct: 36 FKFNTNFGQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVEL 94 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE+I D +K + +F I+N PY I + L+F Sbjct: 95 DPRMAAEVTKRVQGTPEQRKLEVILGDVIKTELPQF------DVCISNTPYQISSPLVFK 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + L+FQ+E R+TA+ P Y R+SV + K T + + + F Sbjct: 149 LLAMPNPP---RTSVLMFQREFALRLTARPGEPLYSRISVNAQFWAKITHIMKVGKNNFR 205 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P P+V S+V+ P + + + + F ++ KTLR S LG +L Sbjct: 206 PPPQVESSVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLT--M 261 Query: 255 IETNLR 260 +E N R Sbjct: 262 VEKNYR 267 >gi|19703632|ref|NP_603194.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|27151573|sp|Q8R6B1|RSMA_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|19713742|gb|AAL94493.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 264 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 17/268 (6%) Query: 19 IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL + + IL KI E S D ++EIG G G LT +L+ +K+ +E Sbjct: 3 FKHKKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVER-VKKITCVE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L+ S N ++ +D L+VD ++ N +++AN+PY I + ++ Sbjct: 62 IDKDLENTLRKKFSSKEN-YTLVMEDVLEVDLRRYINQG--TKVVANIPYYITSPIINKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ QKEVGERI A+ G L++ + ++ +F I F P Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGESEYLFTIPREFFNP 174 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 P V S I + + + K + AF +RK + +L LG + + Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEI 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L+Q I N RAEN+SI+ F + I Sbjct: 235 LNQIEISENERAENISIDKFIELIKIFE 262 >gi|68071473|ref|XP_677650.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA] gi|56497848|emb|CAH94950.1| dimethyladenosine transferase, putative [Plasmodium berghei] Length = 381 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ V+EIG G GNLT LL L ++KVI I+ D + Sbjct: 75 KKHGQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTVKLLPL-SKKVITIDIDARM 133 Query: 83 FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + N LE+ + DA+K F KF AN+PY I + L+F I+ Sbjct: 134 ISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF------DVCTANIPYKISSPLIFKLIAHR 187 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+FQKE ER+ A +Y RL+V + + ++ F P PKV Sbjct: 188 ---PLFKCAVLMFQKEFAERMLANVGDNNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 244 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S V+ IP N + + + F ++RKTL KR N+L Sbjct: 245 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295 >gi|255088241|ref|XP_002506043.1| predicted protein [Micromonas sp. RCC299] gi|226521314|gb|ACO67301.1| predicted protein [Micromonas sp. RCC299] Length = 266 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 127/271 (46%), Gaps = 21/271 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++++GQ+FL+D +++ +++ DG ++EIG G GNLT L+ GA + +EKD+ Sbjct: 1 RRWLGQHFLIDHSVILDALDAAAVTDGDRILEIGPGTGNLTVELVKAGA-VITAVEKDRN 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-------PIRIIANLPYNIGTRLL 134 L+ + + + + D LK + + F +++AN+PYNI T +L Sbjct: 60 LADKLR-TQYDGDDAVTVHEADFLKWNVAREFEHRGVYPGDAHRAKVVANIPYNITTDIL 118 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMFDISPH 193 + + + +FQ+EV R+ Q + Y +SV + ++ + ++ Sbjct: 119 KTLL---PMGDTFGDMVFMFQEEVARRLIRQDSGASDYRPMSVRVHYYSEPYYIRPVTAS 175 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248 F P P V S ++ F P L + Q F ++RK L+ +L+ + + Sbjct: 176 CFDPPPNVESCLVGFRPKPRRELPALRGTEKQFFSFVQACFAQKRKMLKNNLRAVCDDEV 235 Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNIL 276 L G + RA+ L+++++ R+ N + Sbjct: 236 IAAALEDLGRDEKTRAQQLTMDEYVRLFNFV 266 >gi|159107917|ref|XP_001704233.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803] gi|157432290|gb|EDO76559.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803] Length = 316 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 10/238 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 K GQ+ L + ++K I E + TV+EIG G GNLT LL AR VI I Sbjct: 2 QGFELTKQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KARHVIAI 60 Query: 77 EKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D + LK + P + II D K+ + ++N PYNI + + Sbjct: 61 EIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMPPSEI---PPFDLCVSNCPYNISSGI 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + P + L+FQ E +R+ A+ Y RL+V T +K ++ +S + Sbjct: 118 VFRLLEIQPLPRKF---VLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRN 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P P V S V+ P P L+ +T+ F K+ KTL K + L Sbjct: 175 SFKPPPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTKSLLDDLA 232 >gi|197294383|ref|YP_001798924.1| dimethyladenosine transferase [Candidatus Phytoplasma australiense] gi|226732607|sp|B1V9I5|RSMA_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|171853710|emb|CAM11607.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) [Candidatus Phytoplasma australiense] Length = 284 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 24/270 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + PKK GQNFL D+N+LKKI + G VIEIG G G+LT L+T A ++ E Sbjct: 2 QHQPKKKYGQNFLKDVNLLKKIVSKANL-KGKNVIEIGPGKGSLTN-LITKEANLLLAYE 59 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRL 133 D P L +++II DD LK DF+ +F+I+ + +I+NLPY I T + Sbjct: 60 IDPTLKPFL----VFDTTKIKIIYDDFLKRDLVKDFDNYFSINCQLSLISNLPYYITTTI 115 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF I P TL+ QKEVG R+ AQ NS +Y LSV+T + + ++ H Sbjct: 116 LFKIIQT----PQIVDATLMMQKEVGMRLMAQPNSKNYNALSVITQYFFNIEKIQEVKSH 171 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQSLKRLG---- 245 +FFP PKV S V+ H + ++ + AF ++RKTL +L + Sbjct: 172 MFFPQPKVDSVVLKLSKHKSDFNTFSTSSQKNFITFVKAAFKQKRKTLLNNLSSVFLLPK 231 Query: 246 GENLL--HQAGIETNLRAENLSIEDFCRIT 273 E +L Q + T +RAE +++++F +I+ Sbjct: 232 TEIILFFEQNKLLTKIRAEEITLKEFQKIS 261 >gi|156102204|ref|XP_001616795.1| dimethyladenosine transferase [Plasmodium vivax SaI-1] gi|148805669|gb|EDL47068.1| dimethyladenosine transferase, putative [Plasmodium vivax] Length = 417 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ V+EIG G GNLT LL + A+KVI I+ D + Sbjct: 82 KKHGQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDIDARM 140 Query: 83 FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + N LE+ + DA+K F +F AN+PY I + L+F I+ Sbjct: 141 VSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF------DICTANIPYKISSPLIFKLIAHR 194 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+FQKE +R+ A +Y RL+V K + ++ F P PKV Sbjct: 195 ---PLFKCAVLMFQKEFADRMLANVGDSNYSRLTVNVKLFCKVVKICNVDRSSFNPPPKV 251 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S ++ IP N + + + F ++RKTL KR N+L Sbjct: 252 DSVILKLIPKENNFFINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 302 >gi|300120833|emb|CBK21075.2| unnamed protein product [Blastocystis hominis] Length = 314 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 50/299 (16%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 K +GQ+F+ +++++ I E SG V+EIG G G LT LL A+KVI IEKD+ Sbjct: 21 AKGGLGQHFIKNISVVHNIIEKSGIKPTDIVLEIGPGAGILTMELLK-KAKKVIAIEKDE 79 Query: 81 QFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + ++ ++ + LEI+ D LKV+ F ++N+PY I + ++F + Sbjct: 80 RMVHEIQKKVQGTEYESHLEIVYGDFLKVELPYF------DLCVSNVPYVISSGVVFKLL 133 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + + L+FQ+E +R+ A+ Y R+SV T + + + + F P Sbjct: 134 QHR---PIFRAAILMFQEEFTQRLCAKPGDNMYSRISVNTQLLARTQQLLKVGRNNFNPP 190 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----- 253 PKV S V P E + F ++ KTL K LL + Sbjct: 191 PKVESRVCRIEPLNPRPEVNFEEWDGLVNICFHRKNKTLAAIFKNKSVLELLQKNYEMYC 250 Query: 254 -------------------------GIETNL--------RAENLSIEDFCRITNILTDN 279 GI +L RA +SIEDF R+ + D Sbjct: 251 ALKDIVPRGDMDIKQVVEEVLNSCWGISGSLGVGELGQQRASKMSIEDFMRLLDAFLDR 309 >gi|147794654|emb|CAN73506.1| hypothetical protein VITISV_007907 [Vitis vinifera] Length = 383 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 12/223 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I S TV+EIG G GNLT LL A++V+ + D + Sbjct: 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLL-QAAQRVVAVXLDARM 108 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL+ ++H ++L +I DALK DF +F ++AN+PY I + L+ + Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S TLL QKE R+ A + RL+V + + D+S F P PK Sbjct: 163 ANP---FRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S+V+ P L T+ F K+ KTL + K Sbjct: 220 VDSSVVTIRPKAEIPDVDLNEWCAFTRTCFSKKNKTLGATFKH 262 >gi|94970375|ref|YP_592423.1| dimethyladenosine transferase [Candidatus Koribacter versatilis Ellin345] gi|122064276|sp|Q1ILA1|RSMA_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|94552425|gb|ABF42349.1| dimethyladenosine transferase [Candidatus Koribacter versatilis Ellin345] Length = 285 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 24/276 (8%) Query: 21 PKK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK +GQNFL D + KI E+ G + TV+EIG G G +T L A+++I +E D Sbjct: 13 AKKAKLGQNFLSDASGALKIVEALGDISDATVVEIGPGRGAITDHLAKR-AKRLIAVEID 71 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------------SSPIRIIANLPY 127 + L+ S+ N +EI++ D L V+ +RII NLPY Sbjct: 72 RVLAAQLRLRYSRLEN-VEILEADILAVELSTVLAQRIGPLRDLRPTKPEKVRIIGNLPY 130 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + +L A F ++ QKEV +RI A+ + YG LS + T + Sbjct: 131 YITSDILLRLFEAHALIDF---AVIMVQKEVADRIAAKPGTRDYGLLSATSQLYTHVEKL 187 Query: 188 FDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--- 242 F + P F P+P+V STV+ P L + E + FG++RKTL +L+ Sbjct: 188 FTLPPGSFNPAPQVHSTVLKLQMEPKLEALGVDEEGFDSFLKLIFGQKRKTLFNNLRVAY 247 Query: 243 -RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + G+++++RAE +++E ++ N L Sbjct: 248 DMAKAREAMKAVGLKSDVRAEAVALEKTAQLYNELR 283 >gi|70953687|ref|XP_745929.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi] gi|56526401|emb|CAH78914.1| dimethyladenosine transferase, putative [Plasmodium chabaudi chabaudi] Length = 379 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D + Sbjct: 75 KKHGQHLLKNPGILDKIIIAAKIKSSDVVLEIGCGTGNLTIKLLPL-AKKVITIDIDARM 133 Query: 83 FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K + + LE+ + DA+K F +F AN+PY I + L+F I+ Sbjct: 134 ISEVKKRCLYEGYSNLEVYEGDAIKTIFPRF------DVCTANIPYKISSPLIFKLIAHR 187 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P ++ L+FQKE ER+ A +Y RL+V + + ++ F P PKV Sbjct: 188 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 244 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S V+ IP N + + + F ++RKTL KR N+L Sbjct: 245 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295 >gi|254166890|ref|ZP_04873744.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] gi|197624500|gb|EDY37061.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] Length = 238 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL++ I I + + V+EIG G G LT LL +V IE D+ Sbjct: 3 RYSQNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLEKC--EVYAIEIDKTLC 60 Query: 84 PILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L I RL +I DALKV+F KF +I+AN+PY+I + LLF + + Sbjct: 61 EYLNIIFQDDIKDGRLHLICGDALKVNFPKF------NKIVANIPYHISSPLLFKILEYE 114 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E L+ Q E ER+ A+ S YGRLSV+ + +A ++ + F P P+V Sbjct: 115 -----FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRV 169 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S ++ + + L + ++ F +RRK +R L + + R Sbjct: 170 DSAIVKIT-KKDRFCYDKDKLNEFVRKLFEQRRKKIRNILGEVPY----------GDRRV 218 Query: 262 ENLSIEDFCRITNI 275 E LS E+ C + Sbjct: 219 EELSPEEICEVVQY 232 >gi|15220982|ref|NP_171690.1| PFC1 (PALEFACE 1); mRNA (2'-O-methyladenosine-N6-)-methyltransferase [Arabidopsis thaliana] gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] Length = 343 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 141/292 (48%), Gaps = 24/292 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + HS L+ P+K +GQ+++L+ +I ++A ++ +G V+EIG G G+LT + Sbjct: 55 DDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNV 114 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113 L+ LGA V+ IEKD ++ + + ++ +++Q+D +K Sbjct: 115 LINLGA-TVLAIEKDPHMVDLVSERFAG-SDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172 S+ ++++NLP+NI T ++ + + + LL Q E R+ + Y Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRLVEPALRTSEYR 229 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229 +++L + ++ F + FFP PKV + V+ F P P ++ + A Sbjct: 230 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLVNSA 289 Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 F +RK LR+SL+ + E L AG+ R E L+++DF ++ N++ Sbjct: 290 FNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVIA 341 >gi|307353999|ref|YP_003895050.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM 11571] gi|307157232|gb|ADN36612.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM 11571] Length = 257 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 25/261 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL D + ++KIA S TV+EIG G G LT+ LL GA KVI IE D + IL Sbjct: 7 QHFLTDPDAIRKIAHFSDI-KDQTVLEIGPGKGALTKELLERGA-KVIAIEIDPKMIEIL 64 Query: 87 KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + RL ++ +DA++ D+ F +IANLPY+ +++ F + Sbjct: 65 GSRFADEIDSGRLNLLNEDAVRCDYPDF------DIVIANLPYSASSKITFRLLEHG--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 ++ L++QKE R+ A + + GRLSV+ K + ++ P F P P V S Sbjct: 116 --FKEAVLMYQKEFALRMMALPGTSNCGRLSVMVQTYAKVMPLLNLPPEAFSPPPAVDSM 173 Query: 205 VIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLK---RLGGENLLHQA-----G 254 V+ P + +E F RRKTL++SLK + GE + Sbjct: 174 VVRITMKEELTYPVDDPEFYSILVRELFSHRRKTLKKSLKSSRSVIGEKRYERIVSMLPD 233 Query: 255 IETNLRAENLSIEDFCRITNI 275 RAE LS++DF I+NI Sbjct: 234 EMLKKRAEELSLKDFSNISNI 254 >gi|308160049|gb|EFO62557.1| Dimethyladenosine transferase [Giardia lamblia P15] Length = 319 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 10/238 (4%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 K GQ+ L + ++K I E + TV+EIG G GNLT LL A+ VI + Sbjct: 2 QGFELTKQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAV 60 Query: 77 EKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 E D + LK + P + +I D K+ + ++N PYNI + + Sbjct: 61 EIDPRMVSELKKRIAAIPEYRGKFTVIHKDFTKMPPNEI---PPFDLCVSNCPYNISSGI 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + P + L+FQ E +R+ A+ Y RL+V T +K ++ +S + Sbjct: 118 VFRLLEIQPLPRKF---VLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRN 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P P V S V+ P P L+ +T+ F K+ KTL K N L Sbjct: 175 SFKPPPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTRSLLNDLA 232 >gi|269123293|ref|YP_003305870.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM 12112] gi|268314619|gb|ACZ00993.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM 12112] Length = 273 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 126/267 (47%), Gaps = 13/267 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK GQNFL D +L+KI E + +IEIG G G LT M+L GA K+ E Sbjct: 10 HKHKKKFGQNFLDDKILLEKIKEVTNISVNDNIIEIGPGIGFLTSMILESGA-KLKSFEI 68 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D P+L + N E+I D L + E R+IAN+PY I ++ + Sbjct: 69 DNDLIPVLNKKFGNYEN-FELIHVDFLLYNLENIMGKGKEYRVIANIPYYITAPIINKLL 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + L+ QKEVGER+ +KN+ + G + + G+ +K +F + F P Sbjct: 128 E---FKDNIKDIYLMVQKEVGERLNFEKNTSNKGVFTHVVGFHSKVEYLFTVEKEFFDPI 184 Query: 199 PKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLL 250 PKV S I I E K + +F +RK++ +LK +G EN L Sbjct: 185 PKVDSAFIRINIDKEEKYSKMISFEKYLKYVKASFASKRKSISNNLKTIGISKGITENAL 244 Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277 G N RAE LSIEDF + NI+ Sbjct: 245 VFIGKNNNSRAEELSIEDFIALINIIE 271 >gi|33240213|ref|NP_875155.1| dimethyladenosine transferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|62900571|sp|Q7VCH7|RSMA_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33237740|gb|AAP99807.1| Dimethyladenosine transferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 279 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 123/269 (45%), Gaps = 11/269 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +P+K GQ++L D +IL+KI ++ + ++EIG G G LT+ LL + V +E Sbjct: 5 GHVPRKRFGQHWLRDDSILEKILLAADLQEEDRILEIGPGRGALTEKLLESNVKLVHGVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D + LK + +R + + DAL V I++ +++AN+PYNI LL Sbjct: 65 LDAELIVGLKQRFAG-QSRFTLQEGDALSVSLLPHDGIAAN-KVVANIPYNITGPLLERL 122 Query: 138 ISA--DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I + ++ L LL QKEV +RI A + +SV K + ++ P F Sbjct: 123 IGRLGRSSEVKYQRLVLLVQKEVAKRILALPGQSSFSAMSVRLQLLAKCQSVCEVHPSSF 182 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S VI P + I Q AF RRK LR +L ++ + L Sbjct: 183 SPQPKVYSEVIILDPLEKDERLDFLVERRVASIVQIAFLSRRKKLRNTLTKICPLDELEP 242 Query: 253 A----GIETNLRAENLSIEDFCRITNILT 277 GI N R + L+ + ++ L Sbjct: 243 LAYRQGINLNQRPQELAPMIWVQLARELE 271 >gi|169625150|ref|XP_001805979.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15] gi|111055562|gb|EAT76682.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15] Length = 378 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 12/238 (5%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K S K +H K +GQ+ L + + I + + V+E+G G GNLT ++ Sbjct: 19 KPTSAKASAAHSIFKMDKDLGQHILKNPGVASAIVQKAFLKQSDHVLEVGPGTGNLTVLI 78 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+ V +E D + L P RL+++ D +K + F I+ Sbjct: 79 LK-AAKAVTAVEMDPRMAAELTKRVQGTPEAKRLKVMLGDVIKTELPHF------DVCIS 131 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N PY I + L+F +S + P S L+FQ+E R+ A+ Y RLSV K Sbjct: 132 NTPYQISSPLVFKLLSLPSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAK 188 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + + + F P P V S V+ P E + + AF ++ +TLR S Sbjct: 189 VSHIMKVGRNNFNPPPLVESNVVRIEPKFPRPQIAYEEWDGLLRIAFVRKNRTLRASF 246 >gi|289596434|ref|YP_003483130.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] gi|289534221|gb|ADD08568.1| dimethyladenosine transferase [Aciduliprofundum boonei T469] Length = 243 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL++ I I + + V+EIG G G LT LL +V IE D+ Sbjct: 8 RYSQNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLEKC--EVYAIEIDKTLC 65 Query: 84 PILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L I RL +I DALKV+F KF +I+AN+PY+I + LLF + + Sbjct: 66 EYLNIIFQDDIKDGRLHLICGDALKVNFPKF------NKIVANIPYHISSPLLFKILEYE 119 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E L+ Q E ER+ A+ S YGRLSV+ + +A ++ + F P P+V Sbjct: 120 -----FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRV 174 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S ++ + + L + ++ F +RRK +R L + + R Sbjct: 175 DSAIVKIT-KKDRFCYDKDKLNEFVRKLFEQRRKKIRNILGEVPY----------GDRRV 223 Query: 262 ENLSIEDFCRITNI 275 E LS E+ C + Sbjct: 224 EELSPEEICEVVQY 237 >gi|156055498|ref|XP_001593673.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980] gi|154702885|gb|EDO02624.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980 UF-70] Length = 383 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 16/239 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E Sbjct: 28 FKHNKDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILES-AKKVIAVEV 86 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P RLE++ D +K + F I+N PY I + L+F Sbjct: 87 DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTELPHF------DVCISNTPYQISSPLVFK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P L+FQ+E R+TA+ Y RLSV + K T + + + F Sbjct: 141 LLSLPNPP---RCSVLMFQREFALRLTARPGDSLYCRLSVNAQFFAKITHIMKVGKNNFR 197 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P+V S+V+ P E + + F ++ +T+R S LG + +L Sbjct: 198 PPPQVESSVVRIEPKTGKERPGVSWEEWDGMLRICFVRKNRTMRASW--LGMKQVLAMC 254 >gi|281358611|ref|ZP_06245090.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548] gi|281314959|gb|EFA98993.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548] Length = 276 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 131/279 (46%), Gaps = 12/279 (4%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 L L + P + +GQNFLLD N+L I S G TV+E+G G G LT+ L Sbjct: 2 NKQQLTAALESIGMRPGRGLGQNFLLDGNLLDYIVRLSAPQPGETVLEVGPGFGALTRKL 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L GA V +E D + L+ N + + DA +V++ + P R IANL Sbjct: 62 LASGAD-VYAVEFDHRIAEYLRTHLEA--NNFHLTEADACRVNYLELLPQGRPFRAIANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+I T + + P E++ + Q+E+GER+ A + YG LSV T R + Sbjct: 119 PYSISTIFIARMLDLPAPP---EAMFFMLQREMGERLAAPVGTKDYGALSVRTQLRYEVK 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243 + + P VFFP P+V S ++ F H L + + F +RRK L + L Sbjct: 176 LEKIVPPEVFFPPPEVDSAIVSFRRHERYSADKELCRLLPGVVKTVFAQRRKQLGKLLSN 235 Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 G+ L I T R + LS++ + ++T +L D Sbjct: 236 NYGKEKALPALEALNIPTETRPDKLSVDQYAQLTRLLFD 274 >gi|254583294|ref|XP_002497215.1| ZYRO0F00308p [Zygosaccharomyces rouxii] gi|238940108|emb|CAR28282.1| ZYRO0F00308p [Zygosaccharomyces rouxii] Length = 319 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 14/243 (5%) Query: 14 LSHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 H +GQ+ L + + + I + + TV+E+G G GNLT +L R Sbjct: 22 AKHLGSVFKFNTDLGQHILKNPLVAQGIVDKAQLRPSDTVLEVGPGTGNLTVRILEQ-VR 80 Query: 72 KVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 K +E D + L +LEI+ D +K D F I+N PY I Sbjct: 81 KAYAVEMDPRMAAELTKRVRGTDGERKLEILLGDFIKTDLPYF------DVCISNTPYQI 134 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + L+F I+ P L+FQ+E R+ A+ Y RLS + Sbjct: 135 SSPLVFKLINQPRPP---RVAVLMFQREFAMRLVARPGDALYCRLSANVQMWANVVHIMK 191 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 +S + F P P+V S+V+ P + + F ++ KT+ K ++ Sbjct: 192 VSKNNFRPPPQVESSVVRLEIKNPRPPIEFNEWDGLLRIVFVRKNKTIAAGFKSSSVIDI 251 Query: 250 LHQ 252 L + Sbjct: 252 LEK 254 >gi|18978235|ref|NP_579592.1| dimethyladenosine transferase [Pyrococcus furiosus DSM 3638] gi|27151575|sp|Q8TH24|RSMA_PYRFU RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|18894050|gb|AAL81987.1| dimethyladenosine transferase (s-adenosylmethionine-6-n' [Pyrococcus furiosus DSM 3638] Length = 273 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 129/276 (46%), Gaps = 27/276 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 LS Y P+ +GQNFL+ +++ K E+S V+E+G G G LT L A K Sbjct: 8 FLSKYNFSPRDKIGQNFLIMRDVIIKAVETSEIKKSDVVLEVGPGFGFLTDELSKR-AGK 66 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V IE D++ IL++ + +EIIQ DA+K+++ +F ++++N+PY I + Sbjct: 67 VYAIELDKRIIEILEN--EYNWENVEIIQGDAVKIEWPEF------NKVVSNIPYQISSP 118 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 F + D +E +++Q E +R+ A+ +Y RLS++ A ++ I Sbjct: 119 FTFKLLKHD-----FEKAVVMYQLEFAKRMVAKPGDRNYSRLSLMVNALANAKIVMKIGR 173 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RLGG 246 F+P PKV S ++ +P P +E + + + F RRK + ++LK + Sbjct: 174 GAFYPKPKVDSALVLIVPK--PKDERIELNENLVKALFQHRRKLVSKALKESCHMLGINK 231 Query: 247 ENLLHQAGI-----ETNLRAENLSIEDFCRITNILT 277 + L I R L+ E+ I L Sbjct: 232 KELKTLKNILENVPHAKKRVFELTPEEVKEIEEFLK 267 >gi|213966088|ref|ZP_03394276.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46] gi|213951286|gb|EEB62680.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46] Length = 301 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 87/293 (29%), Positives = 134/293 (45%), Gaps = 32/293 (10%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + I+P K +GQNF+ D N +++I ++ + +E+G G G+LT LL Sbjct: 13 EVRDLAAQLDIVPTKKLGQNFVHDANTVRRIVAAADLPEDSYPVEVGPGLGSLTLGLLEH 72 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 R +E D + L ++ LE+I+ DALKV E F ++P ++ANLP Sbjct: 73 CGR-AAAVEIDHRLAARLPQTVTERAEGCALELIEKDALKVSREDF--QTAPDALVANLP 129 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YN+ +L + ++ P + ++ Q EV +R+ AQ S YG SV + Sbjct: 130 YNVSVPVLLHMLAE---LPTIRRVLVMVQSEVADRLAAQPGSKIYGVPSVKAAYYGTVRR 186 Query: 187 MFDISPHVFFPSPKVTSTVIHFI----------------PHLNPI---PCCLESLKKITQ 227 I PHVF+P PKV S ++ P P P L + Sbjct: 187 AGAIGPHVFWPVPKVDSGLVRIDCYARSDAPETSDVSGAPEAAPWEISPQFRARLFPLID 246 Query: 228 EAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 AF +RRKTLR +L + G L AGI+ R E L I DF R+ + Sbjct: 247 AAFAQRRKTLRAALSGIYGSGAAAEEALMAAGIDPRQRGEKLEIADFVRLAEV 299 >gi|224437068|ref|ZP_03658049.1| dimethyladenosine transferase [Helicobacter cinaedi CCUG 18818] gi|313143541|ref|ZP_07805734.1| dimethyladenosine transferase dimethyltransferase [Helicobacter cinaedi CCUG 18818] gi|313128572|gb|EFR46189.1| dimethyladenosine transferase dimethyltransferase [Helicobacter cinaedi CCUG 18818] Length = 296 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 128/273 (46%), Gaps = 19/273 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK +GQNFL D + + KI +S +L V EIG G G+LTQ LL + +I E Sbjct: 6 HHAKKRLGQNFLQDSHYIHKIVQSIPTLPIQCV-EIGVGLGDLTQELLKIE--SLIAYEV 62 Query: 79 DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D +L + S+ RL II +D L ++ + + ++++NLPY I T ++ Sbjct: 63 DLDLCSLLNEKFSKQIESGRLHIIYEDVLNRPSQQAWLHTQEYKVVSNLPYYIATHIIVR 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + F ++ QKEV ++ A+ + LSVL A ++FD+ F Sbjct: 123 LLHDR----FCRGFIVMTQKEVAQKFCAKSGEKEFCALSVLVESLGTAELLFDVPKEAFS 178 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248 P PKVTS+V F+ H NP+ + L+ + AF RKTL ++L + Sbjct: 179 PIPKVTSSV--FVIHKNPLQGNADFSLCDLEAFLKLAFCSPRKTLAKNLSLSFDKKSVEL 236 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L A ++ N RA + E F I N L D Sbjct: 237 ALESANVKPNARAHEVKTESFHHILNTLKKGND 269 >gi|312194501|ref|YP_004014562.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c] gi|311225837|gb|ADP78692.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c] Length = 342 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 80/299 (26%), Positives = 119/299 (39%), Gaps = 47/299 (15%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 + P K GQNFL+D N ++++ +G V+E+G G G+LT LL AR+V+ + Sbjct: 34 LDLRPTKRRGQNFLVDPNTVRRLVRLAGIGPDDVVLEVGPGIGSLTLGLLG-AARRVLAV 92 Query: 77 EKDQQFFPILK-----DISSQHPNRLEIIQDDALKVDFEKFFNISSP------------- 118 E D L + RL ++ DAL++ Sbjct: 93 EVDPALAAALPATAAARLDPATAGRLTVLTRDALRLVPADLPGEPDQPIGAAGPASASGV 152 Query: 119 -------------------IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 + ANLPYNI LL + P E ++ Q EV Sbjct: 153 AGPASGAGAGSPGGAAGAPTVLAANLPYNIAVPLLLGLLER---FPSLERGLVMVQAEVA 209 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 +R+T+ YG SV W + + VF+P P V S ++ F P P L Sbjct: 210 DRLTSPPGGRVYGVPSVKLAWYAGSRSAGAVPRSVFWPVPNVDSGLVAFTRRPAPAPSEL 269 Query: 220 ES-LKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272 + + AF +RRKTLR +L G + L AG++ R E L I +CR+ Sbjct: 270 RADVFAAIDAAFAQRRKTLRTALAGWAGSPAAVDRLTRAAGVDPGARGETLDIAAYCRL 328 >gi|32490769|ref|NP_871023.1| hypothetical protein WGLp020 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340186|sp|Q8D3I1|RSMA_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|25165975|dbj|BAC24166.1| ksgA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 261 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 94/259 (36%), Positives = 138/259 (53%), Gaps = 8/259 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P K +GQNFL D I+KKI +IEIG G G LT + + ++ + IE Sbjct: 2 HKPIKKLGQNFLKDKKIIKKIINFINPKYKDKIIEIGPGLGALTIPISKI-SKSITAIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137 D+ + + N L II D +K++ +KFF+ P+RI +LPYNI L+FN+ Sbjct: 61 DKNLV-YFLNKNKNIKNNLNIINIDIMKLNLKKFFSSFCDPVRIFGSLPYNISVSLMFNF 119 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + + QKEV +RI A+ N+ HYG +SV+ + + DIS F P Sbjct: 120 IEN---YNKIIDMHFVIQKEVAQRILARPNNKHYGYISVIMQYYFYVEKLIDISNCAFKP 176 Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 PKV S++I PH P P C ++ +K + + AF +RRK L+ SLK+ + I Sbjct: 177 IPKVQSSLIRMRPHKVCPFPFCDIDKMKVLLKSAFNQRRKMLKNSLKKYFSVEQIILYKI 236 Query: 256 ETNLRAENLSIEDFCRITN 274 LRAENLSIE++C ++N Sbjct: 237 NPKLRAENLSIENYCNLSN 255 >gi|50306253|ref|XP_453098.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|52788270|sp|P78697|DIM1_KLULA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49642232|emb|CAH00194.1| KLLA0D00594p [Kluyveromyces lactis] Length = 320 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+EIG G GNLT +L ARKV+ +E Sbjct: 29 FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQ-ARKVVAVEF 87 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K + F I+N PY I + L+F Sbjct: 88 DPRMAAELTKRVHGTPVEKKLEILLGDFMKTELPYF------DVCISNTPYQISSPLVFK 141 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I+ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 142 LINQPKPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 198 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ + + F ++ +T+ K +L + Sbjct: 199 PPPKVESSVVRIEIKNPRPQVDFNEWDGLLRIVFVRKNRTIAAGFKSTTVLEILEK 254 >gi|189485764|ref|YP_001956705.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287723|dbj|BAG14244.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 265 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 19/262 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ G+NFL D NI I +++ V+EIG G G LT+++ L + + +E Sbjct: 4 GKSMRQKDGKNFLTDNNIANNIIKAANLEKYDEVLEIGPGKGILTKIIQ-LQVKYLTAVE 62 Query: 78 KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 KD+ L S H R ++II D LK + ++ ++II+NLPYN+GT ++ Sbjct: 63 KDKILSQQLNHYFSFHGARNIKIINADFLKYNIP-----NTELKIISNLPYNVGTAIIQK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + W + + QKEV +R+ AQ S YG +S+ T + T ++FD+S F Sbjct: 118 ILPLK----HWTTAVFMLQKEVTQRLVAQPGSKAYGYISIFTSYYTDCKILFDVSSRCFS 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ------SLKRLGGENLL 250 P PK+ S+VI + + AF RRKT+ +L++ ++L Sbjct: 174 PPPKIISSVIKLTNKASEP--TDPVFFDFVKHAFKTRRKTILNCLSSFKNLEKSKAAHIL 231 Query: 251 HQAGIETNLRAENLSIEDFCRI 272 + ++ LR + LSI DF R+ Sbjct: 232 NACALDPFLRPDKLSIPDFLRL 253 >gi|239981691|ref|ZP_04704215.1| dimethyladenosine transferase [Streptomyces albus J1074] Length = 267 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 18/268 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P K GQNF++D N +++I ++ V+E+G + L A+ V +E Sbjct: 2 GVRPTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGP-GLGSLTLGLLETAQHVTAVE 60 Query: 78 KDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 D L + ++ P R ++ DAL+V +P ++ANLPYN+ + Sbjct: 61 IDDTLAAALPATVEARLPARAAHFALVHSDALRVTE---LPGPAPTALVANLPYNVAVPV 117 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + + P E ++ Q EV +R+ A S YG SV W + I + Sbjct: 118 LLHMLE---HFPTIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVKRAGAIGRN 174 Query: 194 VFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL-----GG 246 VF+P+P V S ++ + P E + + AF +RRKTLR +L Sbjct: 175 VFWPAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAALSGWAGSAAAA 234 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274 E L AG+ R E+L++E+F I Sbjct: 235 EAALVAAGVSPQARGESLTVEEFAAIAE 262 >gi|123455450|ref|XP_001315469.1| dimethyladenosine transferase family protein [Trichomonas vaginalis G3] gi|121898147|gb|EAY03246.1| dimethyladenosine transferase family protein [Trichomonas vaginalis G3] Length = 295 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 120/280 (42%), Gaps = 37/280 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQN L ++K I ++ G ++EIG G GN+T+ +L+ +VI IEK Sbjct: 15 FKMDHSLGQNILRSKVVVKNIVDAGEPRPGDKILEIGPGNGNMTEEMLSREGIEVIAIEK 74 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 DQ+ LK +HPN L II D L VD +F I+N+PYNI + ++F + Sbjct: 75 DQRMCVELKKKFPRHPN-LRIINADVLSVDLPEF------DLCISNIPYNISSAIVFKLL 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P + L+ QKE GERI A+ +GRL++ T ++ ++S F P Sbjct: 128 AR----PTFRRTVLMVQKEFGERIVARPGKDGWGRLAINTQLYASVKLVMNVSRKNFVPP 183 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG---- 254 PKV S V+ P + + F + +TL+ + + LL++ Sbjct: 184 PKVDSIVVSIQPREVQPDIDFNEWDGLIKLCFTRPNRTLQATFHKKKIRALLNENREKYL 243 Query: 255 ----------------------IETNLRAENLSIEDFCRI 272 + R L IEDF + Sbjct: 244 SSINQQATMSIEELIEYVLGTTVLAQSRPMELDIEDFLNL 283 >gi|257792392|ref|YP_003182998.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM 2243] gi|257476289|gb|ACV56609.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM 2243] Length = 347 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 132/343 (38%), Gaps = 75/343 (21%) Query: 1 MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + S+ + +L + + K +GQNFL++ IL+KI + + V+E+G G Sbjct: 1 MTKLSPLASVSETRAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLVPDDYVLEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G LT LL +V+ +E+D +L + S +R ++ DAL + F + Sbjct: 61 IGTLTVALLKS-VGRVLSVERDPDLPAVLAETLSPWADRFALLNKDALDLCSADFQSAEP 119 Query: 118 ------------------------------------------------PIRIIANLPYNI 129 P +++ANLPY + Sbjct: 120 LDAAASRGARSRGEAQGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAV 179 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 ++ ++ ES T++ QKEV +R+ A + +YG +V + F Sbjct: 180 AATVVLDYFERFA---SLESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFA 236 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-------NPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + P FFP P+V S V+ + + + + AF RRKTL S K Sbjct: 237 VGPGNFFPPPRVESAVLRLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCK 296 Query: 243 RLGG-------------ENLLHQAGIETNLRAENLSIEDFCRI 272 L +AGI+ LR E L + +F R+ Sbjct: 297 TYFAGRGPQGAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339 >gi|154151411|ref|YP_001405029.1| dimethyladenosine transferase [Candidatus Methanoregula boonei 6A8] gi|153999963|gb|ABS56386.1| dimethyladenosine transferase [Methanoregula boonei 6A8] Length = 254 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 113/261 (43%), Gaps = 24/261 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D N +++IA + + V+EIG G G LT+ LL GA V +E D+ L Sbjct: 7 QHFLIDKNAIERIAGCADVKEKE-VLEIGPGNGALTRALLDRGA-IVHAVELDRILCDEL 64 Query: 87 KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 D + L + DA K F +++NLPY+ +++ F + Sbjct: 65 ADRFFEEIQKGTLTVTHGDATKCPLPPF------EMVVSNLPYSASSKITFRLLDLG--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + L++Q+E ER+ A + GRLS++ F + P F P P+V S Sbjct: 116 --FSVAVLMYQQEFAERMAAPAGTKDCGRLSIMVQTYATVQRCFTLPPACFSPKPQVHSM 173 Query: 205 VIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG-------ENLLHQA-GI 255 V+ +P + + + F RRKT+R L+ G + ++ G Sbjct: 174 VVKIVPRPPIFGVNDRKRYADVVRALFTHRRKTVRNGLRGSSGILAPEWTKRVIDALPGE 233 Query: 256 ETNLRAENLSIEDFCRITNIL 276 R E L +EDF I N + Sbjct: 234 ILQSRPEELYLEDFATIANFV 254 >gi|313681244|ref|YP_004058982.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994] gi|313154104|gb|ADR32782.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994] Length = 259 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 18/263 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D +L +I +S + EIG G G+LT+ L + + V E D Sbjct: 9 AKKKFGQNFLKDEAVLAQIIQSMPDTP-HRIAEIGPGLGDLTKYL--VDVKSVTAFEVDT 65 Query: 81 QFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 L + N L + D L+ + + P ++ANLPY I T ++ + Sbjct: 66 DLCKHLTHQFADAIATNALTLRCGDVLEHWKSELLD--EPYDLVANLPYYIATNIILKAL 123 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P +L ++ Q+EV E+ +A +G LSV+ +A ++ + P F P+ Sbjct: 124 AD----PACRNLLVMIQREVAEKFSAAPGERAFGALSVIAQSVGEAEIVLHVPPTAFEPA 179 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAG 254 PKV S V+ N E + + AF + RKTL ++L Sbjct: 180 PKVDSCVLLISKRTNR---NDEGFEDFLRTAFTQPRKTLHKNLSSRYDGTVLSQAFETLE 236 Query: 255 IETNLRAENLSIEDFCRITNILT 277 +E ++R L DF R+ ++ Sbjct: 237 LERSIRPHQLDTSDFHRLYTLIK 259 >gi|307128523|ref|YP_003880553.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI] gi|306482985|gb|ADM89855.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI] Length = 254 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 125/257 (48%), Gaps = 9/257 (3%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK +GQ FL D NI KKI S + ++EIG G G LTQ L L + + +IE D++ Sbjct: 4 KKKLGQFFLHDKNIAKKIVNSISFKESKNIVEIGPGMGILTQY-LLLNNKNLFLIEIDKK 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + LK N I + L + FF S +I N PYNI +++LF I Sbjct: 63 YVSYLKMKYPIIKNN--IFHKNFLNWKPKDFFLYS--FTLIGNFPYNISSQILFYIIKYR 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + P +FQKEV +RIT++ + +YG+LSV+ K +F ++ VF P P V Sbjct: 119 EYIP---ECIGMFQKEVADRITSKHMNKNYGKLSVIMQTFYKIEYLFTVNNTVFRPKPNV 175 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S V+ + N I KI + AF RRK L SLK L +Q + R Sbjct: 176 KSAVVRMLKKKNNINIKDSIFFKIVKTAFLYRRKKLYNSLKILSLSPDFYQNPL-LKKRV 234 Query: 262 ENLSIEDFCRITNILTD 278 E LS+ DF +T ++ Sbjct: 235 EQLSVNDFILLTKYASN 251 >gi|126179901|ref|YP_001047866.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1] gi|125862695|gb|ABN57884.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1] Length = 257 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 28/264 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D ++KIA G V+EIG G G LT+ LL A VI +E D L Sbjct: 7 QHFLVDRRAVEKIAGFVDVS-GRRVLEIGPGEGILTRALLDRDAD-VIAVEIDPALVEEL 64 Query: 87 KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + RLEII+ DA KVD F ++ANLPY++ +++ F + Sbjct: 65 EIAFADEIGEGRLEIIRGDAKKVDIPPF------EIVVANLPYSVSSKITFRLLEIG--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 +E L++QKE R+ A +P+ GRLSV+ + ++ P F P P V S Sbjct: 116 --FEVAVLMYQKEFARRMVAPPGTPNVGRLSVMVQTYASVKPLLELGPGSFRPQPAVRSW 173 Query: 205 VIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE------- 256 V+ PH P P + + + F RRKT+R+ L+ G++ I Sbjct: 174 VVRITPHEPPYPIADRRVYADVVRVLFSHRRKTVRKGLRS--GKDAFSPEAIGRTIASLP 231 Query: 257 ---TNLRAENLSIEDFCRITNILT 277 R E+L++E+F I N ++ Sbjct: 232 DDLLQRRPEDLTLEEFALIANKMS 255 >gi|126643017|ref|YP_001086001.1| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC 17978] Length = 187 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 5/185 (2%) Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 HP RL I++ DALK DF + P+R++ NLPYNI T LLF+ + + + + Sbjct: 2 PHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLE---FGSQVKDMH 58 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 + QKEV ERITA+ N+ YGRLSV+ + + T +F++ F P PKVTS V +P+ Sbjct: 59 FMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKVTSAVFRLVPY 118 Query: 212 LNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269 ++L ++ F +RRKTLR SLK + E+ +AG++ R E L++ +F Sbjct: 119 EQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMARPETLTLAEF 178 Query: 270 CRITN 274 + + Sbjct: 179 VALAD 183 >gi|315230155|ref|YP_004070591.1| dimethyladenosine transferase [Thermococcus barophilus MP] gi|315183183|gb|ADT83368.1| dimethyladenosine transferase [Thermococcus barophilus MP] Length = 280 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 27/277 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++LS Y + +GQNFL+ +I+K+ E + TV+EIG G G LT L A+ Sbjct: 8 SLLSKYNLRINSDLGQNFLIVDDIIKREVERAEIKANETVLEIGPGLGFLTDELSKY-AK 66 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 KV +EKD + IL+ S +EII+ DALKV+F +F +I++NLPY I + Sbjct: 67 KVYAVEKDSRLVEILQKEYS--WKNVEIIRGDALKVEFPEF------DKIVSNLPYQISS 118 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F ++ D ++ L++Q E +R+TA+ +Y RLSV+ + ++ I Sbjct: 119 PITFKFLRYD-----FKKAVLIYQLEFAQRMTAKPGDKNYSRLSVMVQAKADVELVERIG 173 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F+P PKV S VI P P +E + + F RRK ++LK L Sbjct: 174 RGAFYPKPKVDSAVIILNPK--PKEEQIELDDSLVKALFQHRRKKASKALKDSYHMLELT 231 Query: 252 QAGI-----------ETNLRAENLSIEDFCRITNILT 277 + R LSI + I L Sbjct: 232 KEKFKEIRRIFDKIPHAEKRVFQLSIWEIKDIEEFLR 268 >gi|45185713|ref|NP_983429.1| ACR026Wp [Ashbya gossypii ATCC 10895] gi|52782780|sp|Q75C90|DIM1_ASHGO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|44981468|gb|AAS51253.1| ACR026Wp [Ashbya gossypii ATCC 10895] Length = 319 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E Sbjct: 28 FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEF 86 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K + F I+N PY I + L+F Sbjct: 87 DPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I+ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 141 LINQPRPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHVMKVGRNNFR 197 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ P + + F ++ +T+ K ++ + Sbjct: 198 PPPQVESSVVRIEIKTPRPPVDFNEWDGLLRIVFVRKNRTISAGFKSTAVLEIMEK 253 >gi|257388711|ref|YP_003178484.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286] gi|257171018|gb|ACV48777.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286] Length = 290 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 24/273 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + + +++ Q+FL+D +L +I + +D V+E+GAGPG LT Sbjct: 12 DGARDPDALVARAGKRADTRQDQHFLIDDRVLDRIPGYADQMDRSHVLEVGAGPGALTDR 71 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + A +V IE+D F L++ + +RL I++ DAL VD +F + Sbjct: 72 LLAV-ADRVTAIERDPDFAAHLREEFADAIDADRLTIVEGDALDVDLPEFS------ASV 124 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY + + F + P + L L+FQ+E ER+ A S YGRLSV G Sbjct: 125 SNLPYGASSEIAFRLL------PRGKPLVLMFQQEFAERMAADPGSDDYGRLSVTAGHYA 178 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL 241 ++ + P F P P+V S ++ P + + F +RRKT+R ++ Sbjct: 179 DVEIVETVPPTAFDPQPRVDSAIVRLRPREPDYSVPDDDFFMDFLKGVFTQRRKTMRNAV 238 Query: 242 KRLG-------GENLLHQAGIET-NLRAENLSI 266 + + ++ A RA LS Sbjct: 239 RNTAHITDLGDPDAVVDAADESLMGKRAGELSP 271 >gi|302914906|ref|XP_003051264.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI 77-13-4] gi|256732202|gb|EEU45551.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI 77-13-4] Length = 332 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 18/246 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 GQ+ L + + I E + TV+E+G G GNLT +L A+K I +E Sbjct: 37 FKFNTNFGQHILKNPGVSDAIVEKAFLKPTDTVLEVGPGTGNLTVRILER-AKKCICVEV 95 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE++ D +K + +F I+N PY I + L+F Sbjct: 96 DPRMAAEVTKRVQGTPEQRKLEVLLGDVIKTELPQF------DVCISNTPYQISSPLVFK 149 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P + L+FQ+E R+TA+ Y RLSV + K T + + + F Sbjct: 150 LLSLPNPP---RTSVLMFQREFALRLTARPGDALYCRLSVNAQFWAKITHIMKVGKNNFR 206 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P P+V S+V+ P + + + + F ++ KTLR S LG + +L A Sbjct: 207 PPPQVESSVVRIEPKTGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTKEVL--AM 262 Query: 255 IETNLR 260 +E N R Sbjct: 263 VERNYR 268 >gi|317490258|ref|ZP_07948746.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA] gi|325833365|ref|ZP_08165814.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1] gi|316910752|gb|EFV32373.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA] gi|325485289|gb|EGC87758.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1] Length = 347 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 132/343 (38%), Gaps = 75/343 (21%) Query: 1 MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + S+ + +L + + K +GQNFL++ IL+KI + V+E+G G Sbjct: 1 MTKLSPLASVSETRAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLAPDDYVLEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G LT LL A +V+ +E+D +L + + +R ++ DAL + F + Sbjct: 61 IGTLTIALLKS-AGRVLSVERDPDLPAVLVETLAPWSDRFALLNKDALDLCSADFQSAEP 119 Query: 118 ------------------------------------------------PIRIIANLPYNI 129 P +++ANLPY + Sbjct: 120 LDAAASRGARSRGEAEGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAV 179 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 ++ ++ ES T++ QKEV +R+ A + +YG +V + F Sbjct: 180 AATVVLDYFEQFA---SLESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFA 236 Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-------NPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + P FFP P+V S V+ + + + + AF RRKTL S K Sbjct: 237 VGPGNFFPPPRVESAVLRLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCK 296 Query: 243 RLGG-------------ENLLHQAGIETNLRAENLSIEDFCRI 272 L +AGI+ LR E L + +F R+ Sbjct: 297 TYFAGRGPQGAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339 >gi|198433957|ref|XP_002130387.1| PREDICTED: similar to transcription factor B1, mitochondrial [Ciona intestinalis] Length = 384 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 23/293 (7%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGA 70 +L Y + +K + QNFLLD I + + L G V E+G GPG +T+ +L Sbjct: 34 ELLKMYNVRARKQLSQNFLLDPLITNRFVLCGAKDLAGHHVCEVGPGPGPITRSILQRKP 93 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRI 121 ++ V+EKD +F P+LK ++ +R+ I+ D LK D + F S P + Sbjct: 94 ERLTVVEKDHRFLPMLKYVADVSNDRMTIVHGDILKYDLSQCFPQELAKDWHKASPPFIV 153 Query: 122 IANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 NLP+N+ L+F W + L L FQ+EV ER AQ RLSV Sbjct: 154 FGNLPFNVSLPLIFKWFEQISRKDGMFKLGRIPLVLTFQREVVERFLAQTGDKQRCRLSV 213 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRK 235 F I+ F P PKV V+ +P I + + + + ++ K Sbjct: 214 SAQNFCDIDYKFIIAGGSFVPPPKVEVGVVKIVPKKTFDINLPFKKIDYVVKHTMHRKSK 273 Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + S+K + + + ++G++ R+ L F + + D Sbjct: 274 YCKHSVKTMFPPKRSDLVDEIFRKSGVDPLTRSNELENLHFRDLCYAYEEIAD 326 >gi|15790240|ref|NP_280064.1| dimethyladenosine transferase [Halobacterium sp. NRC-1] gi|169235969|ref|YP_001689169.1| dimethyladenosine transferase [Halobacterium salinarum R1] gi|27151602|sp|Q9HQH1|RSMA_HALSA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|226732584|sp|B0R506|RSMA_HALS3 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|10580702|gb|AAG19544.1| dimethyladenosine transferase [Halobacterium sp. NRC-1] gi|167727035|emb|CAP13821.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Halobacterium salinarum R1] Length = 282 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 25/275 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++ P Q+FL+D +L +I + D V+EIGAG G LT LL++ A Sbjct: 9 ALIRRAG-RPNPDFDQHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSV-AD 66 Query: 72 KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 +V +E+D+ + L++ + L+++ DAL VD F ++NLPY + Sbjct: 67 RVTAVERDESYASFLREEFADAIAAGDLDVVAGDALAVDLPAF------TCAVSNLPYGV 120 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + + F + P + + L++Q E ER+ A + YGRLSV T +++ Sbjct: 121 ASEVTFRLL------PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVSIVET 174 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGEN 248 + F P P+V S V+ P E+ + F +RRKT R +++ + Sbjct: 175 VPAAAFDPQPRVESAVVRVTPRDPDYVVADEAFFLSFVKALFTQRRKTTRNAIRNTAHIS 234 Query: 249 LL--------HQAGIETNLRAENLSIEDFCRITNI 275 L R +LS F + N+ Sbjct: 235 GLDDPDAVVAAVDDDVLGTRPGSLSPATFAALANV 269 >gi|88604257|ref|YP_504435.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1] gi|119365031|sp|Q2FSA9|RSMA_METHJ RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|88189719|gb|ABD42716.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1] Length = 256 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 28/265 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL D I+ +IA+ G V+EIG G G LT+ LL GAR VI +E D+ L Sbjct: 7 QHFLTDPRIVARIADILDIS-GRIVLEIGPGEGILTEALLERGAR-VISVELDRTLIERL 64 Query: 87 KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + L ++Q DA+KV F ++ANLPY+I + + F + Sbjct: 65 SRRFASEIADGSLTLLQGDAVKVPLPPF------EIVMANLPYSISSPITFRLLDIG--- 115 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 +E+ L++QKE +R+ A + GRLS++ +A FD+ P F P P V ST Sbjct: 116 --FEAAILMYQKEFADRMMAHPGTRDCGRLSIMLQTYARANRCFDLPPGAFSPPPAVRST 173 Query: 205 VIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE------- 256 V+ P P + + + +E F +RRKT++ +LK L G + + I+ Sbjct: 174 VMWIEPREPLFPIHDRKIYEDLVRELFTRRRKTVQSTLKALAG--MFGKEKIDSVVRDLN 231 Query: 257 ---TNLRAENLSIEDFCRITNILTD 278 + R E L +EDF I+N L+ Sbjct: 232 PEILSSRPEALYLEDFATISNQLSS 256 >gi|312137230|ref|YP_004004567.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088] gi|311224949|gb|ADP77805.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088] Length = 283 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 29/293 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 +++ H K IL Y I + +GQNFL++ I KI + TV+EIG G G LT Sbjct: 4 ISSLLHETKYILKKYNISLSRRLGQNFLINEYIRNKIINYANLNKKDTVLEIGPGIGTLT 63 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRI 121 + A+KVI IEKD + ILKD + +EII DALK+ F KF ++ Sbjct: 64 IPMAKY-AKKVIAIEKDCKMVEILKDRIHDLKIDNIEIINADALKIKFPKF------NKV 116 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ++NLPY I + + F ++ D + L++QKE +R+ A+ + +Y RLSV+ ++ Sbjct: 117 VSNLPYTISSPITFKLLNYD-----FNLGVLMYQKEFAQRLIAKPGTSNYSRLSVMMYFK 171 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 ++ I P F P PKV S + + + F +RK +++L Sbjct: 172 ANVELLDIIPPKSFIPRPKVKSA--IVKIIPKKKFKINRFFENVCRALFQHKRKKSKKAL 229 Query: 242 ---------KRLGGENLLHQAGIETNL---RAENLSIEDFCRITNILTDNQDI 282 + + +L + + L R L+ + +I+ + ++ + Sbjct: 230 IESSHELNMNKSKLKQILERL--DPKLAEKRVFKLTPNEILKISKFIEEHDKV 280 >gi|42573814|ref|NP_975003.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|10177517|dbj|BAB10912.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana] gi|332010821|gb|AED98204.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] Length = 380 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 109/241 (45%), Gaps = 12/241 (4%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H + K GQ+ L + IL I SS TV+EIG G GNLT LL A+ V+ Sbjct: 57 EHDGLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVV 115 Query: 75 VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +E D++ IL+ S H ++L IIQ D LK DF F ++AN+PYNI + Sbjct: 116 AVELDKRMVEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSP 169 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+ + + S TLL QKE R+ A + RL+V + D+S Sbjct: 170 LVAKLVYGSN---TFRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSK 226 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F P PKV S+VI P ++ T+ FGK+ KTL ++ L Sbjct: 227 REFVPPPKVDSSVIRITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQKKKVMELQS 286 Query: 253 A 253 Sbjct: 287 L 287 >gi|327542154|gb|EGF28647.1| rRNA adenine dimethylase [Rhodopirellula baltica WH47] Length = 326 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 30/288 (10%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L+ + P GQNFL+DLN+++ IA S+ V+EIG G G+LT ++ A + Sbjct: 38 LTAAGLRPVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTS-IMASQAGAI 96 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-------------DFEKFFNISSPIR 120 + +E DQ F + + + P+ +++IQ DALK + + S Sbjct: 97 LTVEIDQNLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFM 155 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPYN+ T ++ N + D P + + + QKE+GER+ A S YG LS+ Sbjct: 156 LVANLPYNVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSIWIQA 212 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTL 237 +A ++ + P VF+P PKV S ++ N IP L+ + + F RRK L Sbjct: 213 TCRAEIVRILPPTVFWPRPKVDSAIVRLDVDHERRNAIP-DLKYFHQTVRALFFHRRKFL 271 Query: 238 RQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 R L + + +L + G RAE L++E + L Sbjct: 272 RSVVISAMKGRLDKPAIDEILGRLGHGETARAEELNLEQISELVEALR 319 >gi|292656864|ref|YP_003536761.1| dimethyladenosine transferase [Haloferax volcanii DS2] gi|291372487|gb|ADE04714.1| dimethyladenosine transferase [Haloferax volcanii DS2] Length = 287 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 25/261 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q+FL+D ++ +I V+EIG GPG LT LL + A +V V+E+D+ F Sbjct: 34 QHFLVDDRVVDRIPTYLPEEADRSHVLEIGGGPGVLTDRLLGV-ADRVTVVEQDRTFAAH 92 Query: 86 LKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+ + +RL +++ DAL VD +F ++NLPY I + + F + Sbjct: 93 LRREFADEVESDRLTVVEGDALDVDLPEF------TACVSNLPYGISSEISFRLL----- 141 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L L+FQKE GER+ A+ + YGRLSV T + + + F P P V S Sbjct: 142 -PRGKPLVLMFQKEFGERMAAEAGTSEYGRLSVSTQHYGEVELCEHVPREAFDPKPAVQS 200 Query: 204 TVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG-------GENLLHQAGI 255 V+ P E+ + F +RRKT+R ++ E ++ A Sbjct: 201 VVVRITPREPEYEVDDEAFFLDFVKALFTQRRKTIRNGIRNTAHISGLSDPEAVVEAADE 260 Query: 256 E-TNLRAENLSIEDFCRITNI 275 + RA N++ +F + + Sbjct: 261 DVLRKRAGNMAPAEFAELAQL 281 >gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] Length = 342 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 141/293 (48%), Gaps = 24/293 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + HS L+ P+K +GQ+++L+ +I ++A ++ +G V+EIG G G+LT + Sbjct: 54 DDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNV 113 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113 L+ LGA V+ IEKD ++ + + ++ +++Q+D +K Sbjct: 114 LINLGA-TVLAIEKDPHMVDLVSERFAG-SDKFKVLQEDFVKCHIRSHMLSILESRRLSH 171 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172 SS ++++NLP+NI T ++ + + + LL Q E R+ + Y Sbjct: 172 PDSSLAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRLVEPALRTSEYR 228 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229 +++L + ++ F + FFP PKV + V+ F P P ++ + A Sbjct: 229 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPSDYPDVSSTKNFFSLVNSA 288 Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 F +RK LR+SL+ + E L AG+ R E L+++DF ++ N++ Sbjct: 289 FNGKRKMLRKSLQHISSSPEIEKALGVAGLPVTSRPEELTLDDFVKLHNVIAS 341 >gi|313157110|gb|EFR56540.1| dimethyladenosine transferase [Alistipes sp. HGB5] Length = 383 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 14/243 (5%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 A+++G D V+E+G G G LTQ LL E D + L + RL Sbjct: 152 AKAAGRCD---VLEVGCGMGVLTQFLLRRDDIVTYGAEIDPESVEYLHAHYPEFTPRL-- 206 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 ++ D LK++ + F ++II N PYNI +++ F + P + QKEV Sbjct: 207 MEGDFLKMNLRELFPGG--LKIIGNFPYNISSQIFFKVLENRDLVP---ECVGMIQKEVA 261 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC 218 R+ S YG LSVL +F ++ VF P PKV S VI + + + C Sbjct: 262 VRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETVFNPPPKVKSAVIRLRRNGVERLACD 321 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TNLRAENLSIEDFCRITNILT 277 K+ + +FG+RRK +R SL+ + G A RAE LS+ DF +T+ + Sbjct: 322 ETLFVKVVKASFGQRRKMIRNSLRSVFGN--FGGAEHPFFTQRAEQLSVADFVELTDWVA 379 Query: 278 DNQ 280 N+ Sbjct: 380 ANR 382 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 19/25 (76%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESS 43 + KK +GQ+FL+DLNI +KI +S Sbjct: 4 VRAKKALGQHFLVDLNIARKICDSL 28 >gi|110668775|ref|YP_658586.1| dimethyladenosine transferase [Haloquadratum walsbyi DSM 16790] gi|118600870|sp|Q18GB5|RSMA_HALWD RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|109626522|emb|CAJ52985.1| dimethyladenosine transferase (rRNA methylation) [Haloquadratum walsbyi DSM 16790] Length = 296 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 25/267 (9%) Query: 25 MGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 Q+FL+D +L +I S D ++EIGAG G LT LL +G V VIE+D Sbjct: 41 FDQHFLIDDRVLDRIPTYLLDSTDTTHILEIGAGTGALTDRLLAVG-DTVTVIERDATLA 99 Query: 84 PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ + RL II+ DAL+V F I+NLPY I + +LF + AD Sbjct: 100 AFLREEFAVMIDDGRLNIIEGDALEVTLPAF------TTCISNLPYGISSEILFELLPAD 153 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 L ++ Q+E GER+ A + YGRLSV ++ + P F P P V Sbjct: 154 CP------LIVMVQREFGERMAADPGTDAYGRLSVSAQHYATVEVVETVPPTAFAPEPAV 207 Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL- 259 S +I P E+ + + F +RRKT+R +++ ++L N Sbjct: 208 DSALIRAEPRDPDYTVTDETFFLRFVKAVFTQRRKTVRNAIRNTAHISMLDTPDAVVNAA 267 Query: 260 -------RAENLSIEDFCRITNILTDN 279 RA +L+ +F + I + Sbjct: 268 DEALLSQRAGDLTPSEFAELATIAAEK 294 >gi|300711086|ref|YP_003736900.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3] gi|299124769|gb|ADJ15108.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3] Length = 277 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 26/266 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 Q+FL+D +L ++ + ++D V+EIGAGPG LT L + A +V +E+D Sbjct: 21 QHFLIDDRVLDRLPTYATAIDADLSHVLEIGAGPGALTDRLCRV-ADRVTAVERDPDLVS 79 Query: 85 ILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ + L +++ DAL V +F ++NLPY + +++ F Sbjct: 80 FLRREFADEIADGTLSVVEGDALDVSLPEF------TACLSNLPYGVSSQIAFRLF---- 129 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P L L+FQ+E ER+ A+ N+P YGRLSV ++ + F P P V Sbjct: 130 --PRKRPLVLMFQREFAERMVAEPNTPEYGRLSVSAQHYADPEIVETVPKEAFSPPPAVE 187 Query: 203 STVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG-------GENLLHQAG 254 S ++ P E+ + + F +RRKTLR +++ G + ++ A Sbjct: 188 SALVRARPRDPEYTVSDEAFFLRFVKALFTQRRKTLRNAIRNTGHISGLEDPDAVVEAAD 247 Query: 255 IET-NLRAENLSIEDFCRITNILTDN 279 + RA L+ +F + + + Sbjct: 248 EDLMGRRAGTLAPTEFAALCELALER 273 >gi|255560978|ref|XP_002521501.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223539179|gb|EEF40772.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 366 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 111/223 (49%), Gaps = 12/223 (5%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I S TV+EIG G GNLT LL + ARKV+ +E D++ Sbjct: 55 KSKGQHLLTNPRVLDTIVRRSAVEPTDTVLEIGPGTGNLTLRLLEV-ARKVVAVEIDKRM 113 Query: 83 FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 IL++ +S+ ++L+II DALK +F F ++AN+PY I + L+ + Sbjct: 114 VEILRERASEQGLQDKLDIIHKDALKAEFPNF------NIVVANIPYGISSPLVTKLVYG 167 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + SLTLL QKE R+ A P Y RL+V + D+S F PSPK Sbjct: 168 VNK---FRSLTLLLQKEFARRLLANPGDPEYNRLAVNVKLVADVEFVMDVSKRDFVPSPK 224 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 V S+V+ P L + T+ FG + KTL K+ Sbjct: 225 VDSSVVIIRPKTEIPSVNLVEWRAFTRTCFGNKNKTLGAIFKQ 267 >gi|304372921|ref|YP_003856130.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma hyorhinis HUB-1] gi|304309112|gb|ADM21592.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma hyorhinis HUB-1] gi|330723491|gb|AEC45861.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Mycoplasma hyorhinis MCLD] Length = 257 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 127/265 (47%), Gaps = 15/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D ++ KI E + S D +EIG G G +T LL A+ ++ E Sbjct: 4 IQAKKKFGQNFLKDDFVINKIIELANSQDEDA-LEIGPGTGAITIPLLES-AKSLLAYEI 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ L++ ++ + +D L+ D + ++P ++ANLPY I +++LF Sbjct: 62 DKDLIVCLENKIK--SSKFMLKNEDFLEAD----LDFTTPKILVANLPYYITSQILFKVF 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++S+ ++ Q+EV +RI A++ + + +LS+ I P F P Sbjct: 116 ENVNK---FKSMLIMVQEEVADRIVAKEKTSAFSKLSLACQLVADVKKELKILPSSFSPQ 172 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----G 254 PKV S ++ F N P ++ T++ F +RKT +L + + + Sbjct: 173 PKVNSALVSFKFKKNLNPEYIKGFLDFTKKCFSMKRKTFYNNLSTFLNQEKIKELYVKFN 232 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 + N+R + +S+ + +I + + ++ Sbjct: 233 LNYNIRPQQISLNQYIQIYDFIKNS 257 >gi|156838911|ref|XP_001643153.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM 70294] gi|156113749|gb|EDO15295.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM 70294] Length = 319 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E Sbjct: 29 FKFNTDLGQHILKNPLVAQGIVDKANIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 87 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K + F I+N PY I + L+F Sbjct: 88 DPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 141 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I+ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 142 LINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFR 198 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ +T+ K +L + Sbjct: 199 PPPQVESSVVRIEIKNPRPEVDFNEWDGLLRIVFVRKNRTIAAGFKSTSVLEILEK 254 >gi|320166640|gb|EFW43539.1| dimethyladenosine transferase 1 [Capsaspora owczarzaki ATCC 30864] Length = 412 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 88/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S ++ ++ Y + K + QNF+LDLN+ ++ + L VIE+G+GPG LT+ + Sbjct: 7 PSVAVADLIRLYGLSAKSQLSQNFILDLNVTNRLI-APAKLKDAIVIEVGSGPGALTRSI 65 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------NI 115 L G +KV IEKD++F P L+ ++ R++++ D L +D+ K Sbjct: 66 LEAGPKKVFAIEKDRRFLPSLQLLAEAAEGRMQVVHHDILTLDYTKLLAPLVKPQPWSEP 125 Query: 116 SSPIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 S+ + II NLP+NI TRLL + + + L FQ EV ERI A+ + Sbjct: 126 SNGVYIIGNLPFNISTRLLVDLVHDCRLKRGVFGFGRTHLLFTFQHEVAERIVAKPGTSD 185 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEA 229 RLS+L A + + VF P PKV ++F P P+ + S++ + Q Sbjct: 186 RSRLSLLVQHAFAARYHYHMPNTVFVPPPKVQVGGVYFAPLEQPMTAAPIASVELVAQHI 245 Query: 230 FGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 +R K + + RL G LL QA I R N+S E F + + + Sbjct: 246 LNQRGKFISNGVGRLVGGNADIALQLLEQAKIPPTTRVSNVSTEQFAALVDAYEAH 301 >gi|297797749|ref|XP_002866759.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312594|gb|EFH43018.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis lyrata subsp. lyrata] Length = 376 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 108/231 (46%), Gaps = 12/231 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H + K GQ+ L + IL I S TV+EIG G GNLT LL A+ V+ Sbjct: 50 EHDGLFLCKSKGQHLLTNTRILDAIVRCSDVRPTDTVLEIGPGTGNLTMKLLE-AAQDVV 108 Query: 75 VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +E D++ IL+ S H ++L IIQ D LK DF +F ++AN+PYNI + Sbjct: 109 AVELDKRMVEILRKRVSDHGFAHKLTIIQKDVLKTDFPQF------DLVVANIPYNISSP 162 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+ + + S TLL QKE R+ A + RL+V + D+S Sbjct: 163 LVAKLVYGSN---TFRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSK 219 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 F P PKV S+V+ P ++ T+ FGK+ KTL ++ Sbjct: 220 REFVPPPKVDSSVVMITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQ 270 >gi|312221933|emb|CBY01873.1| similar to dimethyladenosine transferase dimethyltransferase [Leptosphaeria maculans] Length = 379 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 23/266 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K +GQ+ L + + I + + V+E+G G GNLT ++L A+ V +E Sbjct: 32 FKMDKDLGQHILKNPGVASAIVQKAYLKQSDHVLEVGPGTGNLTVLILK-AAKAVTAVEM 90 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L RL+++ D +K + F I+N PY I + L+F Sbjct: 91 DPRMAAELTKRVQGTAEAKRLKVMLGDVIKTELPHF------DVCISNTPYQISSPLVFK 144 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S + P S L+FQ+E R+ A+ Y RLSV K + + + + F Sbjct: 145 LLSLPSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAKVSHIMKVGRNNFN 201 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P+V S V+ P + + + AF ++ +TLR S L + Sbjct: 202 PPPQVESNVVRIEPKHPRPQIAYDEWDGLLRIAFVRKNRTLRASFLGTAAVVELLASNYR 261 Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282 FC +IL D+ I Sbjct: 262 L-----------FCAQNDILLDDSPI 276 >gi|258542093|ref|YP_003187526.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-01] gi|256633171|dbj|BAH99146.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-01] gi|256636228|dbj|BAI02197.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-03] gi|256639283|dbj|BAI05245.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-07] gi|256642337|dbj|BAI08292.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-22] gi|256645392|dbj|BAI11340.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-26] gi|256648447|dbj|BAI14388.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-32] gi|256651500|dbj|BAI17434.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654491|dbj|BAI20418.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO 3283-12] Length = 214 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 84/212 (39%), Positives = 120/212 (56%), Gaps = 6/212 (2%) Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 +L A V +E D + ++++++ +PNRL++++ DALK D + +P +IIAN Sbjct: 1 MLNGPAESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTEL--CPAPRQIIAN 58 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ T LL W+ WE LTL+FQ EV ERI A NS HYGRL+VL W Sbjct: 59 LPYNVATPLLIGWLRQGNA---WERLTLMFQLEVAERICAAPNSEHYGRLAVLAQWCADC 115 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ + P F P P V S V PH P P ++++++T AFG+RRK LR +LK Sbjct: 116 AIVMKLPPGAFSPPPAVWSAVASITPHAQQPEPALFKAMERVTAAAFGQRRKMLRGALKG 175 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 L G LL A I+ RAE L + +F R+ Sbjct: 176 LNGYKLLAAADIDGTRRAETLDVAEFDRLARA 207 >gi|300707711|ref|XP_002996053.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01] gi|239605315|gb|EEQ82382.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01] Length = 278 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 33/275 (12%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 K +GQ+ L ++ + I E + ++EIG G GNLT ++ +K+I E D Sbjct: 5 KFNKDLGQHILKNMGAIDTILEKAKIKPTDVILEIGGGTGNLTLKMIP-KCKKLICYEMD 63 Query: 80 QQFFPILKDISS---QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + L + ++ N+ ++ DA+K DF F I+NLPY I + +F Sbjct: 64 PRLASELVKKINANREYANKFQLFIGDAMKHDFPYF------DMCISNLPYQISSPFIFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ + ++ ++FQKE +R+ A+ S Y RLSV + + I + F Sbjct: 118 LLTYN-----FKCAYIMFQKEFADRLIARPGSQDYCRLSVSVQLLAQVDHILKIKKNSFV 172 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---HQA 253 P PKV S V+ P + E + + F ++ KTL + + L + Sbjct: 173 PPPKVESAVVRIEPKIPKPVINFEDFDALLKICFLRKNKTLLANFRGSAFMKTLKTKKRL 232 Query: 254 GIET---------------NLRAENLSIEDFCRIT 273 I+ + RA + +DF + Sbjct: 233 EIDEGEKLIKEILQNLDFSSKRATKMDTDDFLELY 267 >gi|122937785|gb|ABM68619.1| AAEL010575-PA [Aedes aegypti] Length = 266 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 40/266 (15%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98 + +G V+EIG G GN+T LL +KV+ E D + L+ P ++L+ Sbjct: 3 DKAGLRPTDVVLEIGPGTGNMTVKLLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQ 61 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 I+ D LK D F +AN+PY I + +F + PF+ L+FQ E Sbjct: 62 ILIGDVLKADLPFF------DCCVANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEF 112 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 +R+ A+ Y RLSV T + M+ + + F P PKV S+V+ P P Sbjct: 113 AQRLVAKPGDKLYCRLSVNTQLLARVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPIN 172 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-------------------------- 252 +T+ AF ++ KTL + K+ L Q Sbjct: 173 YTEWDGLTRIAFLRKNKTLAAAFKQTSVMTALEQNFKMQCSLKNQDLPEGFSIKEKVEGI 232 Query: 253 -AGIETNL-RAENLSIEDFCRITNIL 276 A I+ RA + I+DF + + Sbjct: 233 LAKIDAGAKRARTMDIDDFMAVLHAF 258 >gi|299116859|emb|CBN74971.1| chloroplast dimethyladenosine synthase (Partial) [Ectocarpus siliculosus] Length = 433 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 124/263 (47%), Gaps = 16/263 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVI 76 PK+ +GQN+L D N + KI G G V+E+G G G LTQ+L + + Sbjct: 134 FRPKQSLGQNYLSDQNYVMKICNHFGDTSEGGRRVLELGPGTGALTQVLHERFPDML-AV 192 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135 + DQ+ +L + L + D L++D+ K + P+ +I NLPY+I +++LF Sbjct: 193 DIDQRAIELL----GSNMPSLNAVMSDVLQLDYTKLAELRGGPLSVIGNLPYHITSQILF 248 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + Q EV +RI A+ ++ YG LSV+ + ++F I P VF Sbjct: 249 TLCD---HYQSVRRAVVTMQLEVAQRIVAKSSTKQYGILSVVFQLYARPQVLFQIPPTVF 305 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253 +P P VTS +I LK + AF +RRK LRQSLK L G+ L + Sbjct: 306 YPQPSVTSALISLDFTGKGPGVNQACLKSVLSSAFQQRRKMLRQSLKPLLRAGQKLPEEF 365 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 R E L ++F +T + Sbjct: 366 ---ATRRPEQLEPQEFVELTRAV 385 >gi|224143306|ref|XP_002324910.1| predicted protein [Populus trichocarpa] gi|222866344|gb|EEF03475.1| predicted protein [Populus trichocarpa] Length = 386 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 12/250 (4%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + IL I S TV+EIG G GNLT LL + A KV+ +E D++ Sbjct: 58 KSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKLLDV-ASKVVAVEIDKRM 116 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +L +H ++L +I++DALK +F KF ++AN+PY I + L+ + Sbjct: 117 VGVLNKRVKEHGFEDKLSVIREDALKAEFPKF------DLVVANIPYGISSPLVAKLVYG 170 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + S TLL QKE R+ A+ + RL+V + ++S FFP PK Sbjct: 171 ANP---FRSATLLLQKEFARRLLAKPGDSEFNRLAVNVKLVADVEFVMNVSKRDFFPVPK 227 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S+V+ P L+ T+ FGK+ KTL + K+ L + T+ Sbjct: 228 VDSSVVIIRPKDRIPDVNLDEWWAFTKNCFGKKNKTLGATFKQKKKVIELFRLSKMTSSN 287 Query: 261 AENLSIEDFC 270 E ++ + Sbjct: 288 GEEINRNQYV 297 >gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 338 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 25/295 (8%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 + ++ +LK + S P+K +GQ+++L+ + +++ ++ +G V+EIG G G+L Sbjct: 48 SSDDYRATLKALNSR-GRRPRKSLGQHYMLNSEVNEQLVCAANVEEGDLVLEIGPGTGSL 106 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-----------DFE 110 T +LL GA V+ IEKD I+++ S H +R +++Q+D +K + Sbjct: 107 TNLLLDTGA-TVLAIEKDAHMAAIVRERFS-HTDRFKLLQEDFVKCHIRFHMLSLLENMT 164 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSP 169 +++AN+P+NI T ++ + + LL Q+E R+ + Sbjct: 165 SLNEKPRRAKVVANIPFNISTDVVKQLL---PMGDIISEVALLLQEETASRLVESSLRTS 221 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKIT 226 Y ++V + + F + FFP P V + V+ F P +S + Sbjct: 222 EYRPINVFVNFYSDPVYKFKVPRSNFFPQPNVDAAVVTFKLKQTADYPAVSSSKSFFSLV 281 Query: 227 QEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 AF +RK LR+SL+ + E L G+ R E L+++DF ++ N++ Sbjct: 282 NSAFNGKRKMLRRSLQHICTSPEIEQALINVGLPATSRPEELTLDDFVKLHNLIA 336 >gi|330508534|ref|YP_004384962.1| dimethyladenosine transferase [Methanosaeta concilii GP-6] gi|328929342|gb|AEB69144.1| dimethyladenosine transferase [Methanosaeta concilii GP-6] Length = 247 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 22/262 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 +GQ+FL+D +I+ I + V+EIG G G LT+ L A +V +E D Sbjct: 2 RLGQHFLIDRSIVDSIVSHADLGLEDWVLEIGPGEGILTRELAAR-AGRVYAVEIDPDLA 60 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + + + +I DAL V ++ +I++NLPYNI +++ + +S Sbjct: 61 ASLCNTAP----NVMVIHADALTVRLPQY------NKIVSNLPYNISSKITYRLLSRP-- 108 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 ++ L+FQKE +R+ A+ S YGRL ++ G+ + ++ ++S F P P V S Sbjct: 109 ---FDLAVLMFQKEFAQRLKAEPASKIYGRLGMVAGFFSHIEILQNVSRKAFRPVPDVDS 165 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNL 259 ++ P + ++ F RRK +++ L G + + L Q+ I N+ Sbjct: 166 AIVRLRPRTERPQVDPRAFMRLADILFRNRRKKVKKGLAAYGVDKMTLAELDQSLI--NM 223 Query: 260 RAENLSIEDFCRITNILTDNQD 281 R E L+ + + + D Sbjct: 224 RPEELTPDQVAGLILAIEKKSD 245 >gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] Length = 349 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 24/295 (8%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T + H+ L+ PKK +GQN++L+ +I +++ +G +G V+EIG G G+L Sbjct: 58 TNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGDVVLEIGPGTGSL 117 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----------FE 110 T L+ GA V+ +EKD+ ++ + S +L+++ +D +K E Sbjct: 118 TNTLINSGA-FVLAVEKDKHMAALVSERFSST-GKLKVLNEDIVKCHVRSHISSLVGSTE 175 Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSP 169 + + +++AN+P+ I T ++ + + + LL Q+E R +P Sbjct: 176 DIDSDTRKAKVVANIPFYISTDVIKLLL---PMGDIFSEVVLLLQEETALRWVEPSLRTP 232 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKIT 226 Y +++ + + F ++ FFP P V + V+ F P P +S + Sbjct: 233 EYRPINIFVNFYSDPEYKFKVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSNKSFFSMV 292 Query: 227 QEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 AF ++RK +R+SL+ + E L G+ + R E L+++DF ++ N +T Sbjct: 293 NSAFNEKRKMIRKSLQHICTSLEIEEALESIGLLSTSRPEELTLDDFVKLHNSIT 347 >gi|296394635|ref|YP_003659519.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985] gi|296181782|gb|ADG98688.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985] Length = 285 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 17/278 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + ++ P K +GQNF+ D +++I ++G +V+EIG G G+LT LL + Sbjct: 14 DIRELAERLEVRPTKRLGQNFVHDPGTIRRIVAAAGLRPQDSVLEIGPGLGSLTLGLLDV 73 Query: 69 GARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A V +E D + L I+++ P R +++ DAL + ++P ++ANLP Sbjct: 74 -AHDVTAVEVDGKLADALSSTIAARAPGRQFHLVEKDALGLTGADL--PAAPTALVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YN+ + ++ P ++ ++ Q EVG+R+ A+ + G ++ T + A + Sbjct: 131 YNVAVPVFLRALAE---LPSIDNALVMVQLEVGQRLAAKPGAREGGVPTLKTAFYGHAEL 187 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTLRQSLK 242 ISP VF+P P V S ++ F + E ++ + AF RRKTL LK Sbjct: 188 AGKISPEVFWPQPNVDSALVRFTRRADSPWATDEHTRRAVFALIDAAFASRRKTLGAVLK 247 Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275 G L AG+ + R E L I F + + Sbjct: 248 GWAGSPEELRRRLEAAGVPGSARGEELHIGQFVALASA 285 >gi|257452467|ref|ZP_05617766.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R] gi|317059008|ref|ZP_07923493.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R] gi|313684684|gb|EFS21519.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R] Length = 271 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 17/268 (6%) Query: 19 IIPKKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL IL KI E S ++EIG G G LT++LL A+ V+ IE Sbjct: 3 FQHKKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQE-AKSVLNIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ PIL+ + ++ D L+V+F ++ +++AN+PY I + ++ Sbjct: 62 IDEDLKPILQKKFGNI-EKYRLVMGDVLEVNFAEYMQEG--TKVVANIPYYITSPIIQKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ L+ QKEVGERI A+K L++ + K +F I F P Sbjct: 119 IENRS---LIQAAFLMVQKEVGERICAKKG-KERSALTLSVEYFAKPEYLFTIPKEYFTP 174 Query: 198 SPKVTSTV--IHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 PKV S I E+ K + F +RK L + LG + Sbjct: 175 IPKVDSAFIGIRMKKEEEIAKQAPETLFFKYVKAGFFNKRKNLANNFLALGFTKAEIKEK 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L GI RAENLS+ED+ + L Sbjct: 235 LAILGISETERAENLSLEDWFSVIKALE 262 >gi|304315447|ref|YP_003850594.1| dimethyladenosine transferase [Methanothermobacter marburgensis str. Marburg] gi|302588906|gb|ADL59281.1| predicted dimethyladenosine transferase [Methanothermobacter marburgensis str. Marburg] Length = 273 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 26/285 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M + +L Y + ++ +GQN+L+D ++I V+EIGAG G LT Sbjct: 1 MTGLYRETRDVLRKYGVRLRRSLGQNYLVDDGKRQRILGYGNLGPDDHVLEIGAGIGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 + L A V IE D IL D + ++II DALKVDF F +++ Sbjct: 61 LPMAEL-AGHVTAIESDPFIAGILADRIKG--DNVDIIVGDALKVDFPAF------NKVV 111 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY I + + F + + +E L++QKE R+ A+ + Y RLSV+ + Sbjct: 112 SNLPYQISSPVTFRLLRHE-----FELGVLMYQKEFAARMVAEPGTRDYSRLSVMLHFLA 166 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR----KTLR 238 + ++ + P FFP P+V S V+ P +P + + + F R+ K+LR Sbjct: 167 EVQIVDYLKPGCFFPRPRVDSAVVTVRPTGFSLPA---LFEDVCRALFQHRKKKTSKSLR 223 Query: 239 QSLKRLGGENLL-HQAGIETN----LRAENLSIEDFCRITNILTD 278 +S + + + + R L E+ IT + + Sbjct: 224 ESFHEIKADLDFSEVLDVLPSEILEKRVFQLKPEEILEITERMEE 268 >gi|254468186|ref|ZP_05081592.1| dimethyladenosine transferase [beta proteobacterium KB13] gi|207086996|gb|EDZ64279.1| dimethyladenosine transferase [beta proteobacterium KB13] Length = 253 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 12/262 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL+D I+K I + + +EIG G G LT L + + +IE Sbjct: 2 IKAKKKFGQNFLIDNQIIKLIVDEIKFSETNKYLEIGPGMGALTSELQK-NTKNLDLIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D IL S++ + +I + D L F ++ NLPY I T ++F +I Sbjct: 61 DPDMIKIL---SAKINSTTQIFEGDVLGFSDNFF---EGYNVVLGNLPYYIATEIIFRFI 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + L + QKEV +R+ A+ S L+ L G+ +A FDI P F PS Sbjct: 115 PINN----VDILYFMVQKEVADRLVAKTGSKENSILTNLLGFNFRAEKCFDIKPESFDPS 170 Query: 199 PKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKVTS+ I H + I K+I +E+F +RK L+ +LK + N I Sbjct: 171 PKVTSSFIKLTRHRDYINEIRYVDYKRIIKESFKFKRKNLKNNLKGVLNLNDFENLEILP 230 Query: 258 NLRAENLSIEDFCRITNILTDN 279 RAE+LSIEDF +IT + N Sbjct: 231 TNRAEDLSIEDFIKITKYVITN 252 >gi|226480668|emb|CAX73431.1| DIM1 dimethyladenosine transferase 1-like protein [Schistosoma japonicum] Length = 313 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 11/241 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + I + GQ+ L + ++ + E SG +V+EIG+G GNLT LL G RKV Sbjct: 13 MKTGGIRFQTTKGQHILKNPLVITTMIEKSGIKSTDSVLEIGSGTGNLTVKLLEKG-RKV 71 Query: 74 IVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 E D + L+ P+R LEI+ DA+K F++ +ANLPY I + Sbjct: 72 YAFEIDPRLVSELQKRVQTSPHRSKLEILVGDAVKATSWPKFDLC-----VANLPYKISS 126 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + I A + + ++FQKE +R+TA+ Y RLS + K + IS Sbjct: 127 PFIQRLIHAGR---GFRAAVVMFQKEFADRLTAKPGDKVYCRLSASAQFHFKIEQLMKIS 183 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P P+V S V+ P P + + F ++ KT+ +L + L Sbjct: 184 RNSFRPPPRVDSAVVRIEPRHPLPPVMHSEWDGLLRLVFARKNKTIGANLGGKSIASHLR 243 Query: 252 Q 252 + Sbjct: 244 K 244 >gi|310793644|gb|EFQ29105.1| dimethyladenosine transferase [Glomerella graminicola M1.001] Length = 378 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 125/274 (45%), Gaps = 27/274 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + I + TV+EIG G GNLT +L ++K+I IE Sbjct: 30 FKFNTNVGQHILKNPGVADAIVHKAELKPTDTVLEIGPGTGNLTVRILE-KSKKLIAIEF 88 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE++ DA+KVD+ F +I+N PY I + L+F Sbjct: 89 DPRMAAEVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQISSPLVFK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ E G+R+ A+ YGRLSV + + + +S F Sbjct: 143 MLAMPKPP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVMKVSKANFR 199 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P P+V S V+ +P E + + F ++ +T+R S LG + +L Sbjct: 200 PPPQVDSCVVRIVPKQGAERPTIAFEEFDGLLRICFNRKNRTMRASW--LGTKEVLQ--M 255 Query: 255 IETNLRA----ENLSIEDFCRITNILTDNQDIAI 284 +E N R N+ ++D ++ D++D A+ Sbjct: 256 LEKNYRTWAAMNNVPLDD-----TLVEDDEDEAM 284 >gi|294055275|ref|YP_003548933.1| ribosomal RNA adenine methylase transferase [Coraliomargarita akajimensis DSM 45221] gi|293614608|gb|ADE54763.1| ribosomal RNA adenine methylase transferase [Coraliomargarita akajimensis DSM 45221] Length = 274 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 14/278 (5%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M S + +L +P K +GQNFL+D NI++K E + +G +V+E+G G G LT Sbjct: 1 MPLNPTSTRELLEALDHLPNKKLGQNFLVDGNIVRKSIELAEIDEGSSVVEVGPGLGTLT 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIR 120 + +L GA K+ +E+D L+D ++ + D L S + Sbjct: 61 RAILGSGA-KLWAVERDSTLAEYLRDKVVPQQPNFDLTEGDCLDHPRAGLPEELAESGFK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+ANLPY + T W+ A P + + L+ QKE +R A ++G +S+ Sbjct: 120 IVANLPYAVSTP----WMEAIISGPLPQRMVLMLQKEAADRYIADSGIKNFGAISIFLQA 175 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 A +S + F P+PKV S ++ N + E+ + + F +RRK L Sbjct: 176 AYHAHSKHLVSANCFHPAPKVDSILLRLDLKENAVQFNAET-RACIRRIFTQRRKQLGAL 234 Query: 241 LKRLGGE------NLLHQAGIETNLRAENLSIEDFCRI 272 K+ E + L + G +R E + ++ + Sbjct: 235 CKKDPYEPAKAWFDSLVEKGYSPTVRPEAIPHHEWVSL 272 >gi|72080979|ref|YP_288037.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448] Length = 250 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 118/258 (45%), Gaps = 15/258 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D I +KI E+ +IEIG G G LT LL A+ V E D+ PI Sbjct: 2 GQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLER-AKFVTCYEIDRNLIPI 59 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L+ L II +D L IIANLPY I +++LF + Sbjct: 60 LEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFANFEK-- 111 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FFP PKV S V Sbjct: 112 -FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPKVNSAV 170 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRA 261 + F N +E T++ F +RKTL +L + + + N+R Sbjct: 171 VLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNIRP 230 Query: 262 ENLSIEDFCRITNILTDN 279 + L + + R+ + +N Sbjct: 231 QQLDLVTYIRLADFYFNN 248 >gi|78499686|gb|ABB45840.1| hypothetical protein [Eutrema halophilum] Length = 310 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 108/244 (44%), Gaps = 14/244 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + IL I S TV+EIG G GNLT LL A+ V+ +E Sbjct: 44 GLFLHKSKGQHLLTNNRILDAIVRISDVRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVE 102 Query: 78 KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D++ IL + H ++L IIQ D LK DF +F ++AN+PYNI + L+ Sbjct: 103 IDKRMVEILGKRVADHGLEDKLTIIQKDVLKTDFPQF------DLVVANIPYNISSPLVA 156 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + S TLL QKE R+ A + RL+V + D+S F Sbjct: 157 KLVYGSNA---FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVQFVMDVSKREF 213 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P PKV S+++ P ++ T+ FG + KTL ++ + ++ Sbjct: 214 VPPPKVDSSLVIIRPKEVKPDVDVQEWLAFTRTCFGNKNKTLGSMFRQ--KKKVIELLNF 271 Query: 256 ETNL 259 Sbjct: 272 SAGR 275 >gi|159906054|ref|YP_001549716.1| dimethyladenosine transferase [Methanococcus maripaludis C6] gi|226732596|sp|A9AAW1|RSMA_METM6 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|159887547|gb|ABX02484.1| dimethyladenosine transferase [Methanococcus maripaludis C6] Length = 263 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 23/269 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D N +KK + D V+E+G G G LT+ L L A+KV VIE D++ Sbjct: 4 SKKLGQCFLKDKNFVKKAINRAEITDKDIVLEVGLGEGALTKELAKL-AKKVYVIELDER 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+S+ N +EII DALKVD + +I+ANLPY I + + F ++ D Sbjct: 63 LKPFADEITSEFEN-VEIIWSDALKVDLKNL----GFNKIVANLPYQISSPITFKFLEED 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E+ L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL---------KRLGGENLLH 251 S ++ E K+ + F R +T++++L +R + +L Sbjct: 173 NSAIVKLTKRKPKYSVKDEKFFKKVLKALFQHRNRTIKRALIDSSHEIEIERDALKEILE 232 Query: 252 --QAGIETNLRAENLSIEDFCRITNILTD 278 ++ + R E ++N+L D Sbjct: 233 KIESEFDFTERVFKTPPEKIGHLSNLLYD 261 >gi|13358166|ref|NP_078440.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|6899612|gb|AAF31015.1|AE002158_13 dimethyladenosine transferase [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 257 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 79/261 (30%), Positives = 128/261 (49%), Gaps = 17/261 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFLL NI KI + + ++EIG G G +T++L+ +I IE D++ + Sbjct: 2 GQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILV-QKTNILIAIELDKRLYAH 60 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNIS------SPIRIIANLPYNIGTRLLFNWIS 139 LK + II +D L VD + I+++ANLPY I ++++ I Sbjct: 61 LKTYIKT--SNFHIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKIIQ 118 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + ++ QKE+ ERI A+ N+ Y +VL K ++F+++ F P P Sbjct: 119 SK----LINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKILFEVNAKEFHPQP 174 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI---- 255 KV S VIH N + +E L K + F +RK L+ +L + +++Q I Sbjct: 175 KVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLKNNLSNIYDIKIINQMFIDYNL 234 Query: 256 ETNLRAENLSIEDFCRITNIL 276 + NLRAEN+ + F ++ N L Sbjct: 235 DMNLRAENIEPKMFLKLFNYL 255 >gi|86152390|ref|ZP_01070600.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 260.94] gi|86154129|ref|ZP_01072328.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|157415933|ref|YP_001483189.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81116] gi|315125095|ref|YP_004067099.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840687|gb|EAQ57939.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85842369|gb|EAQ59585.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|157386897|gb|ABV53212.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81116] gi|307748571|gb|ADN91841.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni M1] gi|315018817|gb|ADT66910.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931321|gb|EFV10290.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 327] Length = 266 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I DA + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ Q+E+ E+ A++ + + L VL+ + M+FD+ P F Sbjct: 117 ALEDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKMLFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ N+R + ++ + +I + L D Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKD 257 >gi|255712883|ref|XP_002552724.1| KLTH0C11704p [Lachancea thermotolerans] gi|238934103|emb|CAR22286.1| KLTH0C11704p [Lachancea thermotolerans] Length = 322 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKVI +E Sbjct: 29 FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDVVLEVGPGTGNLTVRILEQ-ARKVIAVEM 87 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L +L+I+ D +K D F I+N PY I + L+F Sbjct: 88 DPRMGAELTKRVHGTAGEKKLDILLGDFMKTDLPYF------DICISNTPYQISSPLVFK 141 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I+ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 142 LINQPKPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 198 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ +T+ K +L + Sbjct: 199 PPPQVESSVVRLEIKNPRPKVEFNEWDGLLRIVFVRKNRTIAAGFKSTTVLEILEK 254 >gi|256085330|ref|XP_002578875.1| dimethyladenosine transferase [Schistosoma mansoni] gi|238664262|emb|CAZ35113.1| dimethyladenosine transferase, putative [Schistosoma mansoni] Length = 313 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 31/284 (10%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + I +K GQ+ L + ++ + E SG +++EIG+G GNLT LL G RKV Sbjct: 13 IKTGGIRFQKTKGQHILKNPLVINTMVEKSGIKSTDSLLEIGSGTGNLTVKLLEKG-RKV 71 Query: 74 IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 E D + L+ H +LEI+ DA+K F++ IANLPY I + Sbjct: 72 YAFEIDPRMVSELQKRVQTSLHRTKLEILVGDAIKAKSWPKFDLC-----IANLPYKISS 126 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + ISA + + ++ QKE +R+TA+ Y RLS + K + I+ Sbjct: 127 PFIQRLISA---GHGFRAAVVMLQKEFADRLTAKSGDKLYCRLSASAQFHFKIEQLMKIN 183 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + F P P+V S V+ P P + + F ++ KT+ + + L Sbjct: 184 RNSFRPPPRVDSAVVRIEPRHPLPPVMHSEWDGLLRLVFARKNKTIGANFSGKSIASHLR 243 Query: 252 QA--------GIETNLRAENL--------SIEDFCRITNILTDN 279 + G+ E + ++E+ +ITNIL D+ Sbjct: 244 KIYMETCCTKGLSPT--PEAIACESTGVSAMEE--KITNILRDS 283 >gi|50293399|ref|XP_449111.1| hypothetical protein [Candida glabrata CBS 138] gi|52782776|sp|Q6FKY3|DIM1_CANGA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|49528424|emb|CAG62081.1| unnamed protein product [Candida glabrata] Length = 317 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L ARKV+ +E Sbjct: 28 FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 86 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K + F I+N PY I + L+F Sbjct: 87 DPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I+ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 141 LINQPRPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFR 197 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ +T+ K +L + Sbjct: 198 PPPQVESSVVRIEIKNPRPQIDFNEWDGLLRIVFVRKNRTISAGFKSTTVLEILEK 253 >gi|313228791|emb|CBY17942.1| unnamed protein product [Oikopleura dioica] Length = 318 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 75/287 (26%), Positives = 126/287 (43%), Gaps = 42/287 (14%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQ+ L + +++ + E +G L T++EIG G GN+T LL +KVI +E D++ Sbjct: 37 YGQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVA 95 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++ P ++L II DALK + FF++ ++ANLPY I + + F + Sbjct: 96 EVQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---L 146 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P + L+FQKE +R+ AQ Y RLSV + + + + F P PKV Sbjct: 147 HRPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVE 206 Query: 203 STVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRK-------------TLRQSL------ 241 STV+ P P+P + + FG++ + TL ++ Sbjct: 207 STVVRIEPRRPPLPINFTQGEWDSMLRICFGRKNRIMKGEFTNKKVLETLEKNFQTHCSL 266 Query: 242 --KRLGGENLLHQAGIET-------NLRAENLSIEDFCRITNILTDN 279 K L + + IE RA + ++DF ++ + Sbjct: 267 QNKSLPMDFDFKELVIEAVESSDMAEKRARQMDLDDFMKLLAAFNER 313 >gi|257466334|ref|ZP_05630645.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917491|ref|ZP_07913731.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC 25563] gi|313691366|gb|EFS28201.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC 25563] Length = 271 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 17/268 (6%) Query: 19 IIPKKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQNFL IL KI E S ++EIG G G LT++LL A+ V+ IE Sbjct: 3 FQHKKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQE-AKSVLNIE 61 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ PIL+ + ++ D L+V+F ++ +++AN+PY I + ++ Sbjct: 62 IDEDLKPILQKKFGNI-EKYRLVMGDVLEVNFAEYMQER--TKVVANIPYYITSPIIQKI 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 I + ++ L+ QKEVGERI A+K L++ + K +F I F P Sbjct: 119 IENRS---LIQAAFLMVQKEVGERICAKKG-KERSALTLSVEYFAKPEYLFTIPKEYFTP 174 Query: 198 SPKVTSTV--IHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG-----GENL 249 PKV S I E+ K + F +RK L + LG + Sbjct: 175 IPKVDSAFIGIRMKKEEEIAKQVPETLFFKYVKAGFFNKRKNLANNFLALGFTKAEIKEK 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L GI RAENLS+ED+ + L Sbjct: 235 LATLGISETERAENLSLEDWFSVIKALE 262 >gi|260655277|ref|ZP_05860765.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1] gi|260629725|gb|EEX47919.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1] Length = 278 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 11/260 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + + + +GQNFL + ++ + + + TV+EIGAG G LT LL AR V E Sbjct: 20 RFVHRTQLGQNFLANGAVIDRAVARAELREDETVLEIGAGQGVLTSALLASPARFVHSFE 79 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D++ L + +RL + D + + + P ++AN+PY+I T L++ Sbjct: 80 IDRRLEQWLAPLEC---SRLALHWGDVMSFPLAELDPL--PTAVVANIPYHITTPLIWKV 134 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + P L LL QKE ER+ A + L V A +SP F P Sbjct: 135 LE-ELAPRGLTRLVLLVQKEAAERLCAPPRTKARYPLGVTIEAMGNAETFMKVSPGSFVP 193 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQ 252 PKV S ++H +++ ++AF +RRK SL+ G Sbjct: 194 PPKVWSALVHIQLVRRHELALNALWRRLLRDAFAQRRKKALNSLEAAGRNKEETARAFQD 253 Query: 253 AGIETNLRAENLSIEDFCRI 272 I N RAE L+ + + + Sbjct: 254 CSISPNARAEELTTDQWLAL 273 >gi|121612576|ref|YP_001001355.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006244|ref|ZP_02272002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81-176] gi|87249040|gb|EAQ72002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 266 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 14/266 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I DA + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ E+ A++ + + L VL+ + ++FD+ P F Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNGEFSSLGVLSAMICERKILFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVISAVMSLIKTKDFNELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G++ N+R + ++ + +I + L D Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKDK 258 >gi|313215231|emb|CBY42886.1| unnamed protein product [Oikopleura dioica] Length = 289 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 14/232 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQ+ L + +++ + E +G L T++EIG G GN+T LL +KVI +E D++ Sbjct: 26 YGQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVA 84 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++ P ++L II DALK + FF++ ++ANLPY I + + F + Sbjct: 85 EVQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---L 135 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P + L+FQKE +R+ AQ Y RLSV + + + + F P PKV Sbjct: 136 HRPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVE 195 Query: 203 STVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 STV+ P P+P + + FG++ + ++ L + Sbjct: 196 STVVRIEPRRPPLPINFTQGEWDSMLRICFGRKNRIMKGEFTNKKVLETLEK 247 >gi|256389803|ref|YP_003111367.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928] gi|256356029|gb|ACU69526.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928] Length = 306 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 21/282 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF++D N +++I + V+E+G G G+LT LL Sbjct: 24 PAEVRRLAEKLGVSPTKKLGQNFVIDPNTIRRIVRAGDVTAEDVVVEVGPGLGSLTLGLL 83 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN-------RLEIIQDDALKVDFEKFFNISSPI 119 + AR+V+ +E D L D ++ E+++ DAL++ S P Sbjct: 84 DV-ARRVVAVEIDPVLAAALPDTLAEFAPGIAAGQAEFELVRADALRI---AELPGSPPT 139 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYN+ +L + + P E ++ Q EV +R+ A+ YG SV Sbjct: 140 ALVANLPYNVAVPVLLHMLER---FPSIERTLIMVQSEVADRLAAEPGGRVYGVPSVKAR 196 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 W I VF+P+P V S ++ P + AF +RRKTL Sbjct: 197 WYADVKRAGAIGRSVFWPAPNVDSGLVRLDRRAVPPSTKAGRRDVFAAVDAAFAQRRKTL 256 Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274 R +L G L AGI + R E L++E+F R+ Sbjct: 257 RSALSGWAGSPAAAETALTAAGINPSARGETLTVEEFARLAE 298 >gi|226492680|ref|NP_001151385.1| LOC100285018 [Zea mays] gi|195646350|gb|ACG42643.1| dimethyladenosine transferase [Zea mays] Length = 337 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 22/287 (7%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++++ S + +P+K +GQN+ L+ + +++ ++G DG V+EIG G G+LT LL Sbjct: 54 STIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEDGDVVLEIGPGTGSLTSALLQ 113 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSP 118 GA V +EKD+ ++KD +L++I++D L EK+ Sbjct: 114 AGA-TVFAVEKDKHMATLVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYGATKKL 171 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177 ++ +NLP+N+ T ++ + + + L+ Q E R A SP Y ++V Sbjct: 172 AKVASNLPFNVSTEVVKLLL---PMGDVFSVVVLMLQDETAVRFADASIQSPEYRSINVF 228 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRR 234 + ++ F + FFP PKV VI F P +S + AF +R Sbjct: 229 VDFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKR 288 Query: 235 KTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K LR+SL+ + E L G+ R +L ++DF R+ N L Sbjct: 289 KMLRKSLQHICSSSDIEAALDNIGLPVTARPSDLILDDFVRLHNHLA 335 >gi|6324989|ref|NP_015057.1| Dim1p [Saccharomyces cerevisiae S288c] gi|1169344|sp|P41819|DIM1_YEAST RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase; AltName: Full=18S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|601876|gb|AAA57357.1| dimethyladenosine transferase [Saccharomyces cerevisiae] gi|1370549|emb|CAA98001.1| DIM1 [Saccharomyces cerevisiae] gi|151942536|gb|EDN60882.1| dimethyladenosine transferase [Saccharomyces cerevisiae YJM789] gi|190407700|gb|EDV10965.1| dimethyladenosine transferase [Saccharomyces cerevisiae RM11-1a] gi|256271159|gb|EEU06250.1| Dim1p [Saccharomyces cerevisiae JAY291] gi|259149891|emb|CAY86694.1| Dim1p [Saccharomyces cerevisiae EC1118] gi|285815278|tpg|DAA11170.1| TPA: Dim1p [Saccharomyces cerevisiae S288c] gi|323302623|gb|EGA56429.1| Dim1p [Saccharomyces cerevisiae FostersB] gi|323306894|gb|EGA60178.1| Dim1p [Saccharomyces cerevisiae FostersO] gi|323331103|gb|EGA72521.1| Dim1p [Saccharomyces cerevisiae AWRI796] gi|323335244|gb|EGA76533.1| Dim1p [Saccharomyces cerevisiae Vin13] gi|323346064|gb|EGA80354.1| Dim1p [Saccharomyces cerevisiae Lalvin QA23] gi|323351899|gb|EGA84438.1| Dim1p [Saccharomyces cerevisiae VL3] Length = 318 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+E+G G GNLT +L A+ V+ +E Sbjct: 28 FKFNTDLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQ-AKNVVAVEM 86 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEI+ D +K + F I+N PY I + L+F Sbjct: 87 DPRMAAELTKRVRGTPVEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I+ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 141 LINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 197 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ + + F ++ +T+ K ++L + Sbjct: 198 PPPQVESSVVRLEIKNPRPQVDYNEWDGLLRIVFVRKNRTISAGFKSTTVMDILEK 253 >gi|57236897|ref|YP_179850.1| dimethyladenosine transferase [Campylobacter jejuni RM1221] gi|205355725|ref|ZP_03222495.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8421] gi|62900460|sp|Q5HS85|RSMA_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|57165701|gb|AAW34480.1| dimethyladenosine transferase [Campylobacter jejuni RM1221] gi|205346502|gb|EDZ33135.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8421] gi|315059157|gb|ADT73486.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni S3] Length = 266 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I DA + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F Sbjct: 117 ALEDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ N+R + ++ + +I + L D Sbjct: 233 GLKENIRPHEICVDLYLKIYDKLKD 257 >gi|212278079|gb|ACJ23054.1| KsgA [Neisseria gonorrhoeae] Length = 226 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 76/263 (28%), Positives = 113/263 (42%), Gaps = 44/263 (16%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F IS +I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + QKEV ER+ A + Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVA---------------------------------A 141 Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 PK+ S V+ IP + I + K+ + AF +RRKT+R +LK L ++ L GI Sbjct: 142 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 201 Query: 257 TNLRAENLSIEDFCRITNILTDN 279 RAE+++ E + ++N L D Sbjct: 202 PQDRAEHIAPEKYVALSNYLADK 224 >gi|153952508|ref|YP_001398990.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei 269.97] gi|152939954|gb|ABS44695.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei 269.97] Length = 266 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I DA + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ E+ A++ + + L VL+ + ++FD+ P F Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVISAVMSLIKTKDFNELCEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSIL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ N+R + ++ + +I + L D Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKD 257 >gi|85099447|ref|XP_960790.1| dimethyladenosine transferase [Neurospora crassa OR74A] gi|28922314|gb|EAA31554.1| dimethyladenosine transferase [Neurospora crassa OR74A] Length = 398 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 13/238 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + I I + + V+E+G G GN+T L A+KVI IE Sbjct: 35 FKFDKDFGQHILKNPGISDAIVDKAFLKPTDVVVEVGPGTGNITVRALE-KAKKVIAIEL 93 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE+I D +K+ + +I+N PY I + L+F Sbjct: 94 DPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFK 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E +R+ A+ Y RLSV + + + F Sbjct: 149 MLAMPNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFK 205 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S V+ P E + + AF ++ KTL + N+ + Sbjct: 206 PPPKVESDVVRIEPLVGSARPNIAFEEFDGLLRIAFNRKNKTLYAGFNQKEVLNMCER 263 >gi|45358550|ref|NP_988107.1| dimethyladenosine transferase [Methanococcus maripaludis S2] gi|62900533|sp|Q6LYK4|RSMA_METMP RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|44921308|emb|CAF30543.1| dimethyladenosine transferase related protein (rRNA methylase) [Methanococcus maripaludis S2] Length = 267 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 23/269 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D N +KK + + V+E+G G G LT+ L + A+KV VIE D++ Sbjct: 4 SKKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKI-AKKVYVIELDER 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+++ N +EII DALKVD + +I+ANLPY I + + F ++ D Sbjct: 63 LKPFADEITAEFEN-VEIIWSDALKVDLKNL----GFNKIVANLPYQISSPITFKFLEED 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E+ L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL---------KRLGGENLLH 251 S ++ E K+ + F R +T++++L R + +L Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAVFQHRNRTIKRALIDSSHEIEVDRDNLKGILE 232 Query: 252 --QAGIETNLRAENLSIEDFCRITNILTD 278 + + R E ++N+L D Sbjct: 233 KIENEFDFTQRVFKTPPEKIGDLSNLLYD 261 >gi|261402315|ref|YP_003246539.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7] gi|261369308|gb|ACX72057.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7] Length = 274 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 27/275 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE Sbjct: 2 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDIVLEIGLGKGILTEELAKH-AKKVYVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ + + N +EII +DALKVD ++IANLPY I + + F I Sbjct: 61 DKSLESYANKLKENY-NNIEIIWNDALKVDLNTL----DFNKVIANLPYQISSPITFKLI 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ L++Q E +R+ A++ + YGRLSV R + + P F P Sbjct: 116 KKG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEFITKVPPTAFHPK 170 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL----KRLG-GENLLHQ 252 PK+ S +I + N E + F R K++R++L K LG + + + Sbjct: 171 PKIHSALIKIKLNKNKYQIENEIFFDNFLRAVFQHRNKSVRKALIDSSKELGYSKEEMKK 230 Query: 253 AGIETNL----------RAENLSIEDFCRITNILT 277 I+ + + LS+ +F ++N L Sbjct: 231 ILIKFSEKEKIGSLIENKVFKLSVGEFVFLSNELY 265 >gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor] Length = 343 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 22/287 (7%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 60 STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQ 119 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSP 118 GA V +EKD+ ++KD +L++I++D L EK+ Sbjct: 120 AGA-TVFAVEKDKHMATLVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYHATKKL 177 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177 ++++NLP+N+ + ++ + + + L+ Q E R+ A P Y ++V Sbjct: 178 AKVVSNLPFNVSSEVVKLLL---PMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVF 234 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRR 234 + +K F + FFP PKV VI F P +S + AF +R Sbjct: 235 VNFYSKPEYKFRVDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKR 294 Query: 235 KTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 K LR+SL+ L E L G+ R +L ++DF R+ N LT Sbjct: 295 KMLRKSLQHLCSSSEIEAALDNIGLPVTARPSDLILDDFVRLHNHLT 341 >gi|193216436|ref|YP_001999678.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1] gi|226732598|sp|B3PLS2|RSMA_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|193001759|gb|ACF06974.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1] Length = 258 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 16/267 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +I KK GQNFL++ I K I + + D VIEIG G G LT ++ L ++++I E Sbjct: 3 VIAKKRFGQNFLINKAIQKAIVDVACV-DDENVIEIGPGLGALTDLIKEL-SKELIAYEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D F L + + + I +D L F+ +I N+PYNI + +LF I Sbjct: 61 DNDLFKKL--LVENQNSNVRFINEDFLNAT----FDEKKEWVVIGNIPYNITSEILFKLI 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + TL+ Q EV R+ A + Y +L+V + F + F P+ Sbjct: 115 ENHS---ILKKATLMVQDEVANRLVAMPKTKEYSKLTVSVNFVGNVKKHFVVKASNFNPA 171 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAG 254 PKV S +I + + +P L+ + ++ F +RK L +L + + Q G Sbjct: 172 PKVDSAIITIDFYKS-LPYNLKKVLAFIKQIFAFKRKMLINNLVPQWPKADVIWAIEQIG 230 Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281 + RAE LS+++ ++ IL +++ Sbjct: 231 HKQTTRAEELSLQEIMKLYEILVNSKS 257 >gi|237752126|ref|ZP_04582606.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC BAA-430] gi|229376368|gb|EEO26459.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC BAA-430] Length = 276 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 128/271 (47%), Gaps = 15/271 (5%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARK 72 + +I+ KK+ GQNFL + NIL I +S I +IEIGAG G+LT LL+LG Sbjct: 13 IKTKQILAKKHFGQNFLNNENILNAIIQSIPKIEKNIELIEIGAGLGDLTNKLLSLG--N 70 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 + E D++ P L++ L + D L++ + ++ANLPY I Sbjct: 71 ITAYEVDKELVPYLQERFKSALEFGHLNLEIGDVLEIWKGESLR-KQAYFLVANLPYYIA 129 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T L+ I P ++ QKEV ++ AQ ++ LSVL AT++FD+ Sbjct: 130 TLLVIKTIKD----PLSTGCVVMTQKEVAQKFCAQCGESNFSALSVLAQSVGMATLLFDV 185 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247 P F P PKV S+V NP LE L+ + + AF RKT+ +L + + Sbjct: 186 PPTAFVPQPKVISSVFLLQKIANPPSFKDLEHLESLLKVAFSAPRKTILNNLSKAYPKQA 245 Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + L I + R + +D+ R+ IL Sbjct: 246 ILDALESLQIAPSKRPHEIDTQDYHRLLKIL 276 >gi|167754973|ref|ZP_02427100.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402] gi|237735300|ref|ZP_04565781.1| dimethyladenosine transferase [Mollicutes bacterium D7] gi|167705023|gb|EDS19602.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402] gi|229381045|gb|EEO31136.1| dimethyladenosine transferase [Coprobacillus sp. D7] Length = 268 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 136/282 (48%), Gaps = 20/282 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K IL Y + K GQNFL+D+NI+ KI S+ VIE+G G G Sbjct: 1 MKEIATPSTTKYILEKYHLNALKKYGQNFLIDVNIINKIVTSAKIDQTTAVIEVGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116 LTQ+L + KV E D++F P+ ++ +Q + +EII D ++ D + + Sbjct: 61 LTQVL-GRYSGKVTSFEIDERFMPVYQEFLNQ--DNIEIIFGDFMEQDIKPIVDQLKQRY 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + ++ANLPY I T ++ + + + + ++ QKEV ++T +P L + Sbjct: 118 QKVCLVANLPYYITTAIIEKVVLGN---FGIDEMIVMVQKEVALKMTGIYKNP----LLL 170 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 + +F ++ +VF P+P V S ++ P E + F +RRKT Sbjct: 171 MIKDMGTIEYLFTVNKNVFMPAPHVDSAILKIELKKAPDLKLYE----VLNICFKQRRKT 226 Query: 237 LRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +LK+ E +L Q GIE R+E L + DF IT ++ Sbjct: 227 ILNNLKQSYEEAEEILLQTGIENRKRSEELELADFKNITKMI 268 >gi|148273552|ref|YP_001223113.1| dimethyladenosine transferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831482|emb|CAN02443.1| putative dimethyladenosine transferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 304 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 130/284 (45%), Gaps = 21/284 (7%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF++D N +++I + G V+E+G G G+LT LL Sbjct: 21 PAEIRDLAELLGVAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLL 80 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 GA V+ +E D + L + + L ++ +DAL+V P ++AN Sbjct: 81 ETGA-SVVAVEIDGRLAEQLPITVALYQPDAELTVVHEDALRV----AELPGDPTALVAN 135 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EVG RI A S YG SV W Sbjct: 136 LPYNVSVPVLLHLLE---HFPAIRTGVVMVQAEVGHRIAAAPGSKVYGSPSVKAAWYGAW 192 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----KKITQEAFGKRRKTLRQS 240 +S VF+P P V S ++ F H P ESL KI AF +RRK LRQ+ Sbjct: 193 RTAGQVSRQVFWPVPNVDSVLVAFERHAEPF--ASESLRVRTFKIVDAAFQQRRKMLRQA 250 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 L L G LL G+ R E LS+ D+ R+ D Sbjct: 251 LAELLGGSEAASALLEAGGVAPTSRGEELSVHDYLRVARAWADR 294 >gi|86150521|ref|ZP_01068745.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597720|ref|ZP_01100953.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 84-25] gi|218563297|ref|YP_002345077.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|27151611|sp|Q9PLW7|RSMA_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|85838973|gb|EAQ56238.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190024|gb|EAQ94000.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 84-25] gi|112361004|emb|CAL35805.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926902|gb|ADC29254.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315929676|gb|EFV08853.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 305] Length = 266 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I DA + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F Sbjct: 117 ALEDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ N+R + ++ + +I + L D Sbjct: 233 GLKENIRPHEICVDLYLKIYDKLKD 257 >gi|296125514|ref|YP_003632766.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563] gi|296017330|gb|ADG70567.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563] Length = 282 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 23/292 (7%) Query: 3 MNNKSHSLKTI---LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAG 57 M + +S + I L I P K GQNFL D NI IA + G +EIG G Sbjct: 1 MLDNLYSKREITEYLKEKSIFPNKNRGQNFLCDRNIAYNIAYTVPKSYSRGELALEIGGG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G L+ ML+ + + ++E D + LK+ N + II D L D + Sbjct: 61 LGALSSMLIDIYKENLTIVEYDNALYNHLKEKF----NNINIIHKDILTFD---ISDSDK 113 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + N+PYNI + ++ + W + Q + ER+TA++N+ +Y L++ Sbjct: 114 QYDVYGNIPYNIASPIMEWLLQKS--YGKWNYAVFMVQSDFAERLTAKENTENYSALTLF 171 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + +++S VF+P PKVTS++I P I ++ K +++ F RRKT+ Sbjct: 172 ANFMADVKLEYNVSKEVFYPIPKVTSSIISITPKETDIDM-IDIFKSVSKTLFHNRRKTI 230 Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + + + + +L ++ IE N+R E L+++ +++NIL + D Sbjct: 231 KNNFINSPYININKNCIDEILKKSDIEGNVRGETLNLDKVIKLSNILKEYID 282 >gi|87307877|ref|ZP_01090020.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645] gi|87289491|gb|EAQ81382.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645] Length = 303 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 27/282 (9%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P GQNFL+D+N+L I S+ V+EIG G G+LT + A VI +E Sbjct: 20 GLRPVSKHGQNFLIDMNLLDMIVSSADLGPQDVVLEIGTGTGSLTTRMAA-AAGHVITVE 78 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALK-----------VDFEKFFNISS-PIRIIANL 125 D+ F + + + N + ++Q D LK EK I ++++ANL Sbjct: 79 IDEHLFTLASEELFEFDN-VTMLQFDVLKNKNAFRPEVMETIKEKLAEIPDSRLKLVANL 137 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ T +L N + ++ P S+T+ QKEV ERI A ++ YG LS+ + + Sbjct: 138 PYNVATPILSNLLRSEITPF---SMTVTIQKEVAERIIAVPSTKDYGALSIWMQSQCRCE 194 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ + P VF+P PK+ S +IH E T+ F RRK LR L Sbjct: 195 IVRIMGPGVFWPRPKIDSAIIHLQVDDELRGRIPDREFFHHFTRAIFFHRRKFLRSVLMS 254 Query: 244 LGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILT 277 E ++ + G++ + RAE + ++ ++ + Sbjct: 255 AFKEQLTKTQVDEVIAENGLQPDARAEQFTPDEVLAMSEMFR 296 >gi|270014921|gb|EFA11369.1| hypothetical protein TcasGA2_TC011527 [Tribolium castaneum] Length = 379 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 132/285 (46%), Gaps = 35/285 (12%) Query: 28 NFLLD----------LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 NFL D I KI +++G++ V E+G GPG++T+ ++ +K+IV+E Sbjct: 70 NFLDDFEIPTTVTESAKITDKIVKAAGNIRNHYVCEVGPGPGSITRSIIRKCPKKLIVVE 129 Query: 78 KDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFF---------NISSPIRIIANLP 126 KD +F PIL+ + + ++ I D +FE+ F + PI +I NLP Sbjct: 130 KDPRFVPILELLQEASQSHVKMGIKIQDIRDFNFEEGFAGAPAREWTDYPPPIHLIGNLP 189 Query: 127 YNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +++ T L+ W+ A W ++TL FQKEV ERI A RLSV+ + Sbjct: 190 FSVSTNLIIRWLHAISEQRSAWSFGRSTMTLTFQKEVAERIVAPVTHEQRCRLSVMCQFW 249 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQS 240 F I F P P V V+ +P +P+ ++++KI + F R+K + Sbjct: 250 CDVEHKFTIPGRAFVPKPDVDVGVVTLVPKKHPLVKLPFKTVEKILRTVFNMRQKWSIKG 309 Query: 241 LKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILT 277 RL E+ L A +++ +R +S E+F RI Sbjct: 310 GGRLFPEDKRDELAVKLFALADVDSRIRPFEISNEEFARICYAYK 354 >gi|225618959|ref|YP_002720185.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae WA1] gi|225213778|gb|ACN82512.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae WA1] Length = 281 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 23/289 (7%) Query: 3 MNNKSHSLKTI---LSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAG 57 M + +S + + L I P K GQNFL D NI IA + G +EIG G Sbjct: 1 MLDNLYSKREVTEYLKSKSIFPNKNRGQNFLCDKNIAYNIANTIPSHLSRGEYALEIGGG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G+L+ ML + + ++E D + L + N ++I+ D L D N + Sbjct: 61 LGSLSNMLHAVYKDNLTIVEYDNALYNHLIEKF----NDIKIVHQDILTFD---ISNSEN 113 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 + N+PYNI + ++ + W + Q + +R+ A++N+ +Y L++ Sbjct: 114 KYDVYGNIPYNIASPIMEWLL--HESYDKWNYAVFMVQSDFAQRLIAKENTENYSSLTLF 171 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + + + F++S VF+P PKVTS+VI IP +E K +++ F RRKT+ Sbjct: 172 ANFMSNIKLEFNVSKDVFYPIPKVTSSVISIIPKKVDTDI-IEVFKSVSKTLFHNRRKTI 230 Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 R + + + +L+++ I+ N+R E L I+ ++NI+ + Sbjct: 231 RNNFIASPYLNIDKEYIDEILNKSNIDGNIRGETLHIDKVIELSNIVKE 279 >gi|256370598|ref|YP_003108423.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM] gi|256009390|gb|ACU52750.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM] Length = 251 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 127/257 (49%), Gaps = 11/257 (4%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK +GQ FL D NI +KI S T++EIG G G LTQ LL L ++ V +IE Sbjct: 1 MFFKKKLGQYFLHDKNIAQKIVNSISFKK--TIVEIGPGMGMLTQYLL-LKSKNVFLIEI 57 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+++ LK S N + + L + +++F S +I N PYNI +++LF I Sbjct: 58 DKKYVFFLKKKFSIIKNNIFNLN--FLNWNPQEYFLSS--FTLIGNFPYNISSQILFKII 113 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P +FQKEV ERIT++ YG+LSV+ K +F ++ +VF P Sbjct: 114 KYREYIP---ECIGMFQKEVAERITSKNKKKSYGKLSVIMQTFYKIEYLFTVNNNVFIPK 170 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 P+V S V+ + I + AF RRK L SLK L ++ I N Sbjct: 171 PRVKSAVVKMLKKKLNFKIKESIFFNIVKTAFLYRRKKLLNSLKILSFSTEFYKLPI-LN 229 Query: 259 LRAENLSIEDFCRITNI 275 R E LS+ DF +T Sbjct: 230 KRVEQLSVNDFILLTKY 246 >gi|55377170|ref|YP_135020.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049] gi|62900484|sp|Q5V588|RSMA_HALMA RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|55229895|gb|AAV45314.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049] Length = 285 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 126/280 (45%), Gaps = 26/280 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLG 69 ++ Q+FL+D +L +I E + D V+EIGAGPG LT LL Sbjct: 13 ALVRRAGKRADTRQDQHFLVDDRVLDRIPEYATDADIDLSHVLEIGAGPGALTDRLLAT- 71 Query: 70 ARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A +V +E+D F L++ ++ +RL I++ DAL+VD F I+NLPY Sbjct: 72 AERVTAVERDPDFAAHLREEFTEEVAADRLTIVEGDALEVDLPDF------TASISNLPY 125 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 + + F + P L L+FQ+E ER+ A + YGRLSV G ++ Sbjct: 126 GASSEIAFRLL------PEQRPLLLMFQQEFAERMAADPATDDYGRLSVTAGHYADVEVV 179 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG- 245 + P F P P+VTS ++ +P + + F +RRKT+R +++ Sbjct: 180 ETVPPEAFDPQPRVTSALVRTMPRTPDYTVPSDDFFMDFLKAVFTQRRKTMRNAVRNTAH 239 Query: 246 ------GENLLHQAGIET-NLRAENLSIEDFCRITNILTD 278 + ++ A + RA L+ DF + + + Sbjct: 240 ISGLGDPDAVVEAADEGLMSARAGKLTPADFATLATLAYE 279 >gi|213406479|ref|XP_002174011.1| dimethyladenosine transferase [Schizosaccharomyces japonicus yFS275] gi|212002058|gb|EEB07718.1| dimethyladenosine transferase [Schizosaccharomyces japonicus yFS275] Length = 307 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + + + I + S TV+E+G G GNLT +L +KV +E Sbjct: 22 FKFNKDFGQHILKNPLVAQGIVDKSDLKQSDTVLEVGPGTGNLTVRILE-KVKKVTAVEM 80 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +L I+ D +K + F I+N PY I + L+F Sbjct: 81 DPRMAAELTKRVQGTPQEKKLNILLGDVIKTELPYF------DVCISNTPYQISSPLVFK 134 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L+FQ+E R+ A+ P Y RLS + + + F Sbjct: 135 LLKHRPAP---RLAVLMFQREFALRLVAKPGDPLYCRLSANVQMWAHVKHIMKVGKNNFR 191 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 P P+V S+V+ P + P P + + + F ++ KT+ K ++ Sbjct: 192 PPPQVESSVVRIEPKIPPPPIDFDEWDGLLRIVFLRKNKTINACFKTGSVLEMME 246 >gi|326531118|dbj|BAK04910.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 351 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 11/228 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +L I + G V+E+G G GNLT LL +V +E Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRHAALRPGDAVLEVGPGTGNLTARLLAFPVNRVTAVE 93 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + + +L +IQ DA++ +F +F +AN+PY I + L+ Sbjct: 94 TDPRMVDAVTARFGALDMTRKLTVIQGDAMETEFPEF------DVCVANIPYGISSPLIA 147 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + TLL QKE R+ A Y RL+ G ++ D+S F Sbjct: 148 KLLFGAYH---FRTATLLLQKEFARRLVAMPGDSEYNRLAANVGMVADVKLLMDVSKRDF 204 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 P P+V S+++ P P L T+E FG++ KTL K+ Sbjct: 205 VPMPRVDSSLVEIRPRAAPPEVDLAEWLGFTRECFGQKNKTLGAIFKQ 252 >gi|325294975|ref|YP_004281489.1| ribosomal RNA small subunit methyltransferase A [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065423|gb|ADY73430.1| Ribosomal RNA small subunit methyltransferase A [Desulfurobacterium thermolithotrophum DSM 11699] Length = 253 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 124/263 (47%), Gaps = 14/263 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK +GQ+FL D NI++KI +S VIEIG G G LT+ +L +++IVIE Sbjct: 1 MRLKKSLGQHFLKDRNIIRKIVDSGNITFEDRVIEIGPGGGALTEEILKRNPKELIVIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ + L++ +R++I+ DA K DF F + NLPYN+ T +L N + Sbjct: 61 DKDWVEHLREKFG---DRIKIVNADATKFDFSSF---DGKFKYFGNLPYNVSTAILRNLL 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 E + QKEV R++A+K YG L L +FD+SP F P Sbjct: 115 DHKD---SVEKGIFMVQKEVANRLSARKG-KEYGYLPALLSLFFDIKKLFDVSPRAFTPP 170 Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV STV P I L + + AF +RRK L+ +LK + + Sbjct: 171 PKVMSTVFMMTPKEFDIEEKELIEFESFLKRAFSQRRKKLKSNLKLKNYPEEISEYM--- 227 Query: 258 NLRAENLSIEDFCRITNILTDNQ 280 RAE L E + + D Q Sbjct: 228 ERRAEKLPPEKLLELFYTVRDFQ 250 >gi|316975090|gb|EFV58549.1| dimethyladenosine transferase [Trichinella spiralis] Length = 296 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 122/269 (45%), Gaps = 30/269 (11%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K H K+ +S +I K GQ+ L + I+ I E + G T+ E+G G GNLT Sbjct: 7 KRHIGKSNISRQEIPFKTTYGQHILKNPLIVNSIIEKAAIKQGDTIFEVGPGTGNLT--- 63 Query: 66 LTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 V+ E D + L S ++LEI+ DALKV + FF++ +A Sbjct: 64 -------VVACEIDYRLAAELTKRVQGSALQSKLEILPGDALKVQWP-FFDVC-----VA 110 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLP+ I + +F + P + L+FQKE ER+ A+ Y RLSV K Sbjct: 111 NLPFQISSPFVFRLL---LHRPPFRCAVLMFQKEFAERLVAKPGDRLYCRLSVNVQLLAK 167 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + + + F P PKV +TV+ F + P P + + + AF ++ K+L + K Sbjct: 168 VNAVIRVGRNNFRPPPKVDATVVRFELKMPPPPIDFQEWDGLLRIAFLRKNKSLSSAFKF 227 Query: 244 LGGENLLHQAGIETNLRAE----NLSIED 268 ++L + N R N+ IED Sbjct: 228 KKVLDML-----DKNYRVHCSVNNIKIED 251 >gi|94502395|ref|ZP_01308851.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833652|ref|YP_001597848.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS] gi|293977764|ref|YP_003543194.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN] gi|94451049|gb|EAT14018.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206141|gb|ABS30451.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS] gi|292667695|gb|ADE35330.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN] Length = 251 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 9/257 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + K + Q FL D NI KKI S + T++EIG G G LTQ L L + + ++E Sbjct: 1 MFFNKKLCQYFLHDKNIAKKIVNSISFKESKTIVEIGPGMGILTQY-LLLNNKNLFLLEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+++ LK N I + L + + FF S +I N PY I +++LFN I Sbjct: 60 DKKYVEYLKIKYPIIKNN--IFNKNFLIWNPKDFFLDS--FTLIGNFPYKISSQILFNII 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + P +FQKEV +RIT++ + YG+LSV+ K +F ++ VF P Sbjct: 116 KYREYIP---ECIGMFQKEVADRITSKHMNKSYGKLSVIMQAFYKIEYLFTVNNTVFIPK 172 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 P+V S V+ + + + + KI + AF RRK L SLK+L + ++ + Sbjct: 173 PRVKSAVVRMLKRKDNLLIKEDIFIKIVKTAFLYRRKKLYNSLKKLSFSSEFYKNPL-LK 231 Query: 259 LRAENLSIEDFCRITNI 275 R E LS+ DF +T Sbjct: 232 KRVEQLSVNDFILLTKY 248 >gi|288930669|ref|YP_003434729.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642] gi|288892917|gb|ADC64454.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642] Length = 248 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 16/257 (6%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K Q+ L D LKKI + V+E+G GPGNLT +LL A+KV IEKD++F Sbjct: 5 KSRDQHILKDKRYLKKIVSVAEVR-DDVVLEVGCGPGNLTSLLLK-KAKKVYGIEKDRRF 62 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +LK S + +LEII+ DALKV+F + + ++N+P++I + L F + Sbjct: 63 VELLKKKFSGYIEEGKLEIIEGDALKVEFPE------CDKFVSNIPFSISSPLTFKVLKH 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ + +QKE ER+ A++ S YGRLSV+ KA ++ I + F P PK Sbjct: 117 G-----FKLSVVTYQKEFAERLVAREGSKKYGRLSVIAKAYCKAEIVDIIPRYAFKPVPK 171 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TNL 259 V + ++ + LE + + F +RRK + L+ + + + + + Sbjct: 172 VDAAIVKIVHEPEIKVENLEVFEDLVTFVFSRRRKKFSKILEEWCEKRKVRVSDMGYGDE 231 Query: 260 RAENLSIEDFCRITNIL 276 R E + E F I + L Sbjct: 232 RPEKIPPEVFAEIADSL 248 >gi|32477477|ref|NP_870471.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1] gi|62900568|sp|Q7UIR4|RSMA_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|32448031|emb|CAD77548.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1] Length = 284 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 30/283 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + P GQNFL+DLN+++ IA S+ V+EIG G G+LT ++ A ++ +E Sbjct: 1 MRPVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTS-IMASQAGAILTVEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKV-------------DFEKFFNISSPIRIIANL 125 DQ F + + + P+ +++IQ DALK + + S ++ANL Sbjct: 60 DQNLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFMLVANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PYN+ T ++ N + D P + + + QKE+GER+ A S YG LS+ +A Sbjct: 119 PYNVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSIWIQATCRAE 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQS-- 240 ++ + P VF+P PKV S ++ N IP L+ + + F RRK LR Sbjct: 176 IVRILPPTVFWPRPKVDSAIVRLDVDHERGNAIP-DLKYFHQTVRALFFHRRKFLRSVVI 234 Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L + + +L + G RAE L++E + L Sbjct: 235 SAMKGRLDKPAIDEILGRLGHGETARAEELNLEQISDLVEALR 277 >gi|78778284|ref|YP_394599.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251] gi|119365861|sp|Q30NR7|RSMA_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78498824|gb|ABB45364.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251] Length = 267 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 18/264 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI+ KK GQNFL D ++L+KI E+ + ++EIG G G+LT+ L + + V E Sbjct: 3 KIVAKKKFGQNFLKDESVLQKIIEAM-PNNDNKIVEIGPGLGDLTKFL--VDVKSVDAFE 59 Query: 78 KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D +L++ + +L I D L + S ++ANLPY I T ++ Sbjct: 60 VDTDLCKVLQNKFEREIATKQLRIHCGDVLTAWKSELIEES--YDLVANLPYYIATNIIL 117 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++ P +++ ++ Q EV E+ A +G LS++T +A ++ ++ P F Sbjct: 118 KALAD----PKCKNILVMVQLEVAEKFCANDGDKVFGSLSIITQSVGEAHIVVNVPPSAF 173 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLH 251 P PK+ S V + + + + + AF + RKTL ++L + + Sbjct: 174 EPQPKINSAVFLIQKKSDR---SDKDFEDMLRVAFTQPRKTLMKNLSSTYDKAMLQEIFE 230 Query: 252 QAGIETNLRAENLSIEDFCRITNI 275 + + +R +S D+ ++ + Sbjct: 231 KLSLAQTIRPHQVSTNDYHQLYKL 254 >gi|222445676|ref|ZP_03608191.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii DSM 2375] gi|222435241|gb|EEE42406.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii DSM 2375] Length = 306 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 41/296 (13%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + K IL+ Y I K +GQN+L+D N +I + V+EIG G G LT L Sbjct: 14 SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLTIELA 73 Query: 67 TLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +KVI IE+D IL++ ++ + +E+I DDAL V+F KF +II+NL Sbjct: 74 KR-VKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKF------DKIISNL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F +++ D ++ L++QKE R+ + S Y RLS + ++ Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFGK 232 ++ +S F P PKV STV+ P L + ++ K + F Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKLPELNGQLKHLNINEINEKDFKTYSKFVKALFQH 241 Query: 233 RRKTLRQSL------------KRLGGE-NLLHQAGIET--NLRAENLSIEDFCRIT 273 R K ++ +L K + + N + Q IE + R NL+ E+ ++ Sbjct: 242 RNKKVKNALIDSRHIITDLDKKEMKAKLNSIKQKKIEELLSERITNLTPEEILYLS 297 >gi|289618785|emb|CBI54610.1| unnamed protein product [Sordaria macrospora] Length = 401 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 13/238 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + I I + + V+EIG G GN+T L A+KVI I+ Sbjct: 37 FKFDKDYGQHILKNPGISDAIVDKAFLKPTDVVVEIGPGTGNITVRALE-KAKKVIAIDI 95 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE+I D +K+ + +I+N PY I + L+F Sbjct: 96 DPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFK 150 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E +R+ A+ Y RLSV + + + F Sbjct: 151 MLAMPNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFK 207 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S V+ P E + + AF ++ KTL + N+ + Sbjct: 208 PPPKVESDVVRIEPLIGSARPNIAFEEFDGLLRIAFNRKNKTLYAGFNQKEVLNMCER 265 >gi|71894000|ref|YP_279446.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae J] Length = 250 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 117/258 (45%), Gaps = 15/258 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D I +KI E+ +IEIG G G LT LL A+ V E D+ PI Sbjct: 2 GQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDRNLIPI 59 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L+ L II +D L IIANLPY I +++LF + Sbjct: 60 LEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFANFEK-- 111 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ + L+ Q EV +RI A+ +P Y +LS+ + + +F + P FFP PK+ S V Sbjct: 112 -FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFFPKPKINSAV 170 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRA 261 + F N E T++ F +RKTL +L + + + N+R Sbjct: 171 VFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNIRP 230 Query: 262 ENLSIEDFCRITNILTDN 279 + L + + R+ + +N Sbjct: 231 QQLDLVTYIRLADFYFNN 248 >gi|283956167|ref|ZP_06373652.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 1336] gi|283792321|gb|EFC31105.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 1336] Length = 266 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I DA + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDASEAFNSSL--DEKPYFLVANLPYYVASHIILR 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ E+ A++ + + L VL+ + ++FD+ P F Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVISAVMSLIKTKDFDEFCEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSIL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ N+R + + + +I + L D Sbjct: 233 GLKENIRPHEICVNSYLKIYDKLKD 257 >gi|148643434|ref|YP_001273947.1| dimethyladenosine transferase [Methanobrevibacter smithii ATCC 35061] gi|148552451|gb|ABQ87579.1| dimethyladenosine transferase, KsgA [Methanobrevibacter smithii ATCC 35061] Length = 303 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 26/249 (10%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + K IL+ Y I K +GQN+L+D N +I + V+EIG G G LT L Sbjct: 11 SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLTIELA 70 Query: 67 TLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +KVI IE+D IL++ ++ + +E+I DDAL V+F KF +II+NL Sbjct: 71 KR-VKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKF------DKIISNL 123 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F +++ D ++ L++QKE R+ + S Y RLS + ++ Sbjct: 124 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 178 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFGK 232 ++ +S F P PKV STV+ P L + ++ K + F Sbjct: 179 LLTGVSAESFIPKPKVDSTVVRLTPKLPELNGQLKHLNINEINEKDFKTYSKFVKALFQH 238 Query: 233 RRKTLRQSL 241 R K ++ +L Sbjct: 239 RNKKVKNAL 247 >gi|315639329|ref|ZP_07894491.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21] gi|315480655|gb|EFU71297.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21] Length = 260 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 16/266 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D IL KI ++ D ++EIG G G+LTQ LL + V E Sbjct: 2 IKAKKQYGQNFLHDKEILTKITQAI-PKDVKKIVEIGPGLGDLTQELLKISP--VKAYEI 58 Query: 79 DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D L+D + + ++ DA ++ ++ANLPY I ++L+ Sbjct: 59 DADLIGFLRDKFQKELKEEKFILLHQDASELSCFD----EDKYFLVANLPYYIASKLILQ 114 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + L ++ QKE+ + A+ S +G L VL+ + ++FD+SP F Sbjct: 115 ALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPSCFN 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S+V+ I C L+S K + F RK L +LK E L Sbjct: 171 PPPKVVSSVMRLIKQKELKQICELDSFKSFLRICFKSPRKQLLSNLKAEKRELLELFEDL 230 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G++ N+R L + + +I L D Sbjct: 231 GLKENVRPHELCVNSYLKIYEKLKDQ 256 >gi|218660682|ref|ZP_03516612.1| dimethyladenosine transferase [Rhizobium etli IE4771] Length = 173 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 92/174 (52%), Positives = 125/174 (71%), Gaps = 1/174 (0%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + L+ ++ + + +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG Sbjct: 1 MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ +L LGA+KVI IE+D + P L +I+ +P RLE+I+ DALK DFE S P++ Sbjct: 61 LTRAILALGAKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPES-PVK 119 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 IIANLPYN+GT+LL NW+ WPPFW+SLTL+FQKEVGERI A ++ HYGRL Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVADEDDDHYGRL 173 >gi|322369466|ref|ZP_08044031.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253] gi|320551198|gb|EFW92847.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253] Length = 294 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 36/285 (12%) Query: 12 TILSHYKII--PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ + P + Q+FL+D ++ +I + ++ V+EIG GPG LT LL Sbjct: 16 ALIRRAGVRGDPNRD--QHFLVDDRVVDRIPTYADEMNLEHVLEIGGGPGVLTDRLLA-A 72 Query: 70 ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 A +V VIE+D F L++ L +++ DAL V+ F IANLPY Sbjct: 73 ADRVTVIERDPTFAEFLREEFRSECDDGGLTVVEGDALSVELPDFS------ACIANLPY 126 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I + + F + P + + L+FQKE ER+ A+ S YGRLSV ++ Sbjct: 127 GISSEIAFRLL------PLGKPMLLMFQKEFAERMAAESGSDDYGRLSVTAQHYADVRVV 180 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRL-- 244 + F P P+V S ++ IP E+ + F +RRKT+R ++ Sbjct: 181 ETVPREAFAPQPEVESAIVRTIPREPEYEVDDEAFFLDFVKAVFTQRRKTIRNGIRNTAH 240 Query: 245 --------GGENLLHQAGIE------TNLRAENLSIEDFCRITNI 275 + L + RA +S +F + + Sbjct: 241 ISGLDDPDAVVDALESPDDDVLDEDILRERAGKVSPVEFAAMARV 285 >gi|194246621|ref|YP_002004260.1| dimethyladenosine transferase [Candidatus Phytoplasma mali] gi|193806978|emb|CAP18413.1| Dimethyladenosine transferase (high level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Candidatus Phytoplasma mali] Length = 269 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 90/263 (34%), Positives = 132/263 (50%), Gaps = 20/263 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D+N+LKKI + V+EIG G G LTQ ++ L ++K + E D+ Sbjct: 5 KKKYGQNFLSDINLLKKIVNEANL-KNKNVVEIGPGKGALTQFII-LQSKKFLAYEIDET 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVD-FEKFFN--ISSPIRIIANLPYNIGTRLLFNWI 138 P L + N +II DD LK + E FFN I +I NLPY I T L+F ++ Sbjct: 63 LKPFL---IFEKSNNFKIIYDDFLKRNLKEDFFNYFGEEKITLIGNLPYYITTPLIFKFL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 S T++ QKEVG R+ A+ N+ HY LSV+ + TK + ++ ++F P Sbjct: 120 EEKQ----INSFTIMLQKEVGLRLLAKPNTKHYNALSVIIQFLTKIKKILEVKKNMFKPK 175 Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR------LGGENLL 250 PKV S V+ F N + + +F ++RKTL +L + Sbjct: 176 PKVDSIVLKFDKKNQKNLTINFKNNFFIFVKISFSQKRKTLINNLVKGYKINKKKIIIFF 235 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 I+ ++RAE +SIE F I+ Sbjct: 236 DNNNIQYHIRAEQISIELFKEIS 258 >gi|148926802|ref|ZP_01810481.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8486] gi|145844527|gb|EDK21634.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Campylobacter jejuni subsp. jejuni CG8486] Length = 266 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I D + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDTSEAFNPSL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F Sbjct: 117 ALEDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ N+R + ++ + +I + L D Sbjct: 233 GLKENIRPHEICVDLYLKIYDKLKD 257 >gi|134045845|ref|YP_001097331.1| dimethyladenosine transferase [Methanococcus maripaludis C5] gi|166221675|sp|A4FY32|RSMA_METM5 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|132663470|gb|ABO35116.1| dimethyladenosine transferase [Methanococcus maripaludis C5] Length = 263 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 23/269 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D N +KK + + V+E+G G G LT+ L + A+KV VIE D++ Sbjct: 4 SKKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKI-AKKVYVIELDER 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+S+ N +EII DALKVD + +I+ANLPY I + + F ++ D Sbjct: 63 LKPFADEITSEFEN-VEIIWSDALKVDLKNL----GFNKIVANLPYQISSPITFKFLDVD 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E+ L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL---------KRLGGENLLH 251 S ++ + KK+ + F R +T++++L R + +L Sbjct: 173 NSAIVKLTKREPKYFVKDEKFFKKVLKAMFQHRNRTIKRALIDSSHEIEIDRDNLKEILE 232 Query: 252 --QAGIETNLRAENLSIEDFCRITNILTD 278 ++ + + R S E ++N+L D Sbjct: 233 KVESEFDFSERVFKTSPEKIGYLSNLLYD 261 >gi|58613497|gb|AAW79335.1| chloroplast dimethyladenosine synthase [Heterocapsa triquetra] Length = 395 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 19/274 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVI 76 PK+ + QNFL D N + K+ + G V+E+G G G LT L +++ + Sbjct: 110 FKPKQSLSQNFLADPNYVFKMVNAIEDDSPGGKQVLELGPGTGALTSRLHPRFP-EMMAV 168 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135 + DQ+ +L +I+ D L +++ K + P+ I+ NLPY++ +++LF Sbjct: 169 DLDQRAMRVLAQNVPGC----TVIRSDVLLINYTKLAEVRGGPLTIVGNLPYHVTSQILF 224 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + QKEV ERI A+ N+ YG LSV ++FDI P+ F Sbjct: 225 TL---ADHAKSVKDAHVTMQKEVAERIVARPNTKKYGILSVCFQLYADPKILFDIPPNAF 281 Query: 196 FPSPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248 FP P V S+ + + +L+ +T AF RRK L+ SLK L Sbjct: 282 FPRPNVMSSYVKLNFADAEERRLALNVDPRNLRNVTTRAFRMRRKMLQNSLKNLLDCXXT 341 Query: 249 LLHQAGIE-TNLRAENLSIEDFCRITNILTDNQD 281 L+++ E LR E + +F +T +L ++ Sbjct: 342 LINELPEEYAKLRPEQIEPWEFVHLTQLLFGKKE 375 >gi|150400809|ref|YP_001324575.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3] gi|166221674|sp|A6UTZ1|RSMA_META3 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|150013512|gb|ABR55963.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3] Length = 271 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 13/228 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D NI+KK ++ V+EIG G G LT+ L +KVIVIE D++ Sbjct: 4 NKKLGQCFLKDKNIVKKAINAANINKNDIVLEIGLGKGILTKELAKQC-KKVIVIELDKK 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +DI ++PN +EII +DALKV+ ++ +++ANLPY I + + F + D Sbjct: 63 LEIFWEDIIKEYPN-VEIIWNDALKVNLKEL----GFNKVVANLPYQISSPITFKLLDCD 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E L++Q E +R+ A + Y RLSV +R + +SP F P PKV Sbjct: 118 -----FEVAVLMYQYEFAKRMGAPSGTKEYSRLSVSVQYRAVVDYVCKVSPSAFSPKPKV 172 Query: 202 TSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 S ++ PI E + F R K +++L E Sbjct: 173 DSAIVKITKKNEPIHNIDNWEFFDGFNRALFQHRNKNTKKALIHSAHE 220 >gi|170782640|ref|YP_001710974.1| dimethyladenosine transferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157210|emb|CAQ02393.1| putative dimethyladenosine transferase (drug resistance) [Clavibacter michiganensis subsp. sepedonicus] Length = 305 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 83/286 (29%), Positives = 128/286 (44%), Gaps = 17/286 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF++D N +++I + G V+E+G G G+LT LL Sbjct: 22 PAEIRDLAELLGVAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLL 81 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIAN 124 GA V+ +E D + L + + L ++ +DAL+V P ++AN Sbjct: 82 ETGA-SVVAVEIDGRLAEQLPITVALYQPDAVLTVVHEDALRV----AELPGDPTALVAN 136 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ +L + + P + ++ Q EVG RI A S YG SV W Sbjct: 137 LPYNVSVPVLLHLLE---HFPAIRTGVVMVQAEVGHRIAAAPGSKVYGAPSVKAAWYGAW 193 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK 242 +S VF+P P V S ++ F H P + I AF +RRK LRQ+L Sbjct: 194 RTAGQVSRQVFWPVPNVDSVLVAFERHAEPFASEELRKRTFTIVDAAFQQRRKMLRQALA 253 Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 L G LL G+ R E LS+ D+ R+ + + Sbjct: 254 ELLGGSEAASALLEAGGVAPTSRGEQLSVHDYLRVAHAWAGRDQVG 299 >gi|284165664|ref|YP_003403943.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511] gi|284015319|gb|ADB61270.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511] Length = 284 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 18/232 (7%) Query: 27 QNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF 83 Q+FL+D +L ++ D V+EIG G G LT LL +G KV V+E+D++ Sbjct: 21 QHFLVDDRVLDRLPTYLQEIDADTDHVLEIGGGTGALTDRLLAMGDEGKVTVVERDRELA 80 Query: 84 PILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ + L +I+ DAL+VD +F ++NLPY + + + F + Sbjct: 81 EFLREEFADEIAAGNLTVIEGDALEVDLPEF------TASLSNLPYGVSSEITFRLL--- 131 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P L L+FQ+E ER+ A+ + YGRLSV T ++ I F P P V Sbjct: 132 ---PEGRPLVLMFQREFAERMVAEPGTSEYGRLSVSTQHYAAPEIVETIPKEAFSPPPAV 188 Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S V+ P E + + F +RRKT+R +++ L Sbjct: 189 ESAVVRLEPRDPDYEVGDEEFFLRFVKALFTQRRKTIRNAIRNTAHITGLEA 240 >gi|157163959|ref|YP_001467822.1| dimethyladenosine transferase [Campylobacter concisus 13826] gi|171855081|sp|A7ZGB4|RSMA_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|112801728|gb|EAT99072.1| dimethyladenosine transferase [Campylobacter concisus 13826] Length = 280 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 21/277 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK+ GQNFL D L KI ++ D V+EIG G G+LT LL + K E Sbjct: 2 IKAKKHFGQNFLQDKATLDKIIQAI-PKDVENVVEIGPGLGDLTFRLLQI--YKTTSFEI 58 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D++ F ILK + +L++ DAL+ ++ S ++ANLPY + T+++ N Sbjct: 59 DRELFQILKVKFANEIQNGQLKLFCKDALEQWQQEGGLSSENYFLVANLPYYVATKMILN 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + L ++ QKEV + +A+ + LS+L + + ++FD+ +F Sbjct: 119 AIDDEKCL----GLIVMIQKEVALKFSAKSKDKEFSALSILASLQGRCELLFDVDAKLFN 174 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P PKVTS+VI E+ K + AF RKTL ++L + Sbjct: 175 PPPKVTSSVIKLQKTKKIFGKDGIFKDAKQYEAFKAFLRAAFASPRKTLLKNLSTNFDKK 234 Query: 249 LLHQ----AGIETNLRAENLSIEDFCRITNILTDNQD 281 L + + TNLR L ++ + +I I ++ + Sbjct: 235 ALEEIFENMNLATNLRPHELDVDSYLKIFEITKEDNE 271 >gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis] Length = 351 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 132/294 (44%), Gaps = 24/294 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + HS +L P+K +GQ+++L+ I + + + + +G V+EIG G G LT Sbjct: 63 DDYHSTLKVLQSRGRFPRKSLGQHYMLNSAINELMVKEAQLKEGDVVLEIGPGTGALTNA 122 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113 L+ GA V IEKD ++ + + + +++++Q+D + E Sbjct: 123 LVNAGAH-VFAIEKDAHMAMLVSERFNNN-GKVKVVQEDFTRCHIEPQILSFSTSIAPGS 180 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYG 172 N ++++NLP+NI T +L + + + LL Q E+ R+ + +P Y Sbjct: 181 NYGQMAKVVSNLPFNIATDVLKLLL---PMGDMFSHVVLLLQDEMALRVVGSSPGTPEYR 237 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEA 229 ++++ + + F + FFP P V + V+ F P + + A Sbjct: 238 QINIFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLKQVVDYPHVASPKGFFSMVNSA 297 Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 F +RK LR+SL+ L E+ L G+ R L ++DF R+ N+L Sbjct: 298 FNGKRKMLRKSLQHLCASRDIESALRTLGLPETSRPGELEMDDFVRLYNLLNSQ 351 >gi|283953677|ref|ZP_06371208.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 414] gi|283794718|gb|EFC33456.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni 414] Length = 265 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMDNIIEIGPGLGDLTQDLLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I +A + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQNASEAFSASL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ E+ A++ + + L +L+ + ++FD++P F Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGILSAMICERKILFDVNPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV STVI I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVMSTVISLIKIKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTHKAKVLEVLSIL 232 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 G++ N+R + ++ + +I + L D Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKD 257 >gi|308190242|ref|YP_003923173.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma fermentans JER] gi|307624984|gb|ADN69289.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma fermentans JER] Length = 258 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 16/268 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 K+ KK GQNFL D N++ KI E G ++EIG G G LT+ +L A++ Sbjct: 3 QENKLKAKKRYGQNFLKDQNVISKIIELIKPQ-GEKILEIGPGRGALTK-ILNQQAKEFT 60 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D+ L+ + + N +I+Q D L D EK+ + ++ N+PY I + ++ Sbjct: 61 AFEIDRDMVDYLQKNNILNQN--QIVQGDFLIADLEKYKD----YVVVGNIPYYITSDII 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + ++ L+ Q EV +R+ A+ N Y +LS+ + + Sbjct: 115 FKLL---DYRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTY 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251 F P PKV S ++ N E+LK + F RRK L +L + + Sbjct: 172 FDPVPKVDSAIVSITFK-NEENDNYENLKDFFKLCFLARRKKLSFALATKYSNDKIKIAY 230 Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278 + ++ R + L ++ + + L + Sbjct: 231 NKLNLKELTRIQELDLKTILALYDCLEN 258 >gi|150402155|ref|YP_001329449.1| dimethyladenosine transferase [Methanococcus maripaludis C7] gi|166221676|sp|A6VFS2|RSMA_METM7 RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|150033185|gb|ABR65298.1| dimethyladenosine transferase [Methanococcus maripaludis C7] Length = 263 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 23/269 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D N +KK + D V+E+G G G LT+ L + A+KV VIE D++ Sbjct: 4 SKKLGQCFLKDKNFVKKAINRAELTDKDIVLEVGLGEGALTKELAKI-AKKVYVIELDER 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P +I+S+ N +EII DALKVD + +I+ANLPY I + + F ++ D Sbjct: 63 LKPFADEITSEFEN-VEIIWSDALKVDLKTL----GFNKIVANLPYQISSPITFKFLEED 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 +E L++Q E +R+ + ++ Y RLSV + + + P F P P V Sbjct: 118 -----FEVAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL---------KRLGGENLLH 251 S ++ E K+ + F R +T++++L +R + +L Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAIFQHRNRTIKRALIDSSHEIGIERNILKEILE 232 Query: 252 QAG--IETNLRAENLSIEDFCRITNILTD 278 + E R E ++N+L D Sbjct: 233 KIENKFEFTERVFKTPPEKIGYLSNLLYD 261 >gi|158312623|ref|YP_001505131.1| dimethyladenosine transferase [Frankia sp. EAN1pec] gi|158108028|gb|ABW10225.1| dimethyladenosine transferase [Frankia sp. EAN1pec] Length = 291 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 118/282 (41%), Gaps = 17/282 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ + + P K GQNFL+D N ++++ + +E+G G G+LT L Sbjct: 3 SPADIRELAHALDLRPTKRRGQNFLVDPNTVRRLVRLAAVGPDDVALEVGPGLGSLTLGL 62 Query: 66 LTLGARKVIVIEKDQQF-----FPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPI 119 +T A V D + + RL +++ D L+V+ +++P Sbjct: 63 VTEAAAVAAVE-VDPVLAAALPVTAAARLPAAVAARLHVVEADGLRVEPSDLPPAVAAPT 121 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 + ANLPYN+ LL + P ++ Q EV +R+T+ YG SV Sbjct: 122 VLAANLPYNVAVPLLLGLLER---FPSIRRGLVMVQAEVADRLTSPPGGRIYGVPSVKLA 178 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTL 237 W +A + VF+P P V S ++ F P + AF +RRKTL Sbjct: 179 WYAQARPAGAVPRPVFWPQPNVDSGLVAFTRRAAPPADAGLRREVFAAVDAAFAQRRKTL 238 Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274 R +L G E L AG++ R E L +E F R+ Sbjct: 239 RTALAPWAGSPARAEQLARAAGVDPGARGETLDVEAFARLAQ 280 >gi|288869605|ref|ZP_05975193.2| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374] gi|288860560|gb|EFC92858.1| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374] Length = 306 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 138/296 (46%), Gaps = 41/296 (13%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S + K IL+ Y I K +GQN+L+D N +I + V+EIG G G LT L Sbjct: 14 SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLTIELA 73 Query: 67 TLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +KVI IE+D IL++ ++ + +++I DDAL V+F KF +II+NL Sbjct: 74 KR-VKKVIAIEQDSNICQILENRLKKENIDNVDLINDDALNVEFPKF------DKIISNL 126 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F +++ D ++ L++QKE R+ + S Y RLS + ++ Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFGK 232 ++ +S F P PKV STV+ P L + ++ K + F Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKLPELNGQLKHLNINEINEKDFKTYSKFVKALFQH 241 Query: 233 RRKTLRQSL------------KRLGGE-NLLHQAGIET--NLRAENLSIEDFCRIT 273 R K ++ +L K + + N + Q IE + R NL+ E+ ++ Sbjct: 242 RNKKVKNALIDSRHIITDLDKKEMKAKLNSIKQKKIEELLSERITNLTPEEILYLS 297 >gi|297618729|ref|YP_003706834.1| dimethyladenosine transferase [Methanococcus voltae A3] gi|297377706|gb|ADI35861.1| dimethyladenosine transferase [Methanococcus voltae A3] Length = 275 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 21/268 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D N +KK + + V+EIG G G LT+ L + A+KV VIE D++ Sbjct: 13 SKKLGQCFLKDKNFVKKAINRANLNNDDIVLEIGLGEGVLTKELAKV-AKKVYVIELDKR 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ ++PN + II +DALKVD + +I+ANLPY I + + F ++ Sbjct: 72 LEIFANEVIKEYPN-VSIIWEDALKVDLDSL----DFNKIVANLPYQISSPITFKFLERK 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L++Q E +R+ ++++ YGRLSV + M+ + P F P PKV Sbjct: 127 K---GFDLAILMYQYEFAKRMAGKEDTKEYGRLSVAVQYSADVKMICKVPPTAFSPKPKV 183 Query: 202 TSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI----- 255 S ++ + E + K + + F R KT+ ++L E L + + Sbjct: 184 DSAIVSLVKKNPEYDVLDEKMFKNLLKALFQHRNKTVGKALVNSAHEIKLSRESVKQFVE 243 Query: 256 ------ETNLRAENLSIEDFCRITNILT 277 + R L + N+LT Sbjct: 244 EYSEAFDFKERVFKLPGFKIGELANLLT 271 >gi|332671564|ref|YP_004454572.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484] gi|332340602|gb|AEE47185.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484] Length = 329 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 80/296 (27%), Positives = 125/296 (42%), Gaps = 35/296 (11%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 ++ + + P K +GQNF+LD ++KI + G V+E+G G G+LT LL Sbjct: 29 EIRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVAAGERVVEVGPGLGSLTLGLLEA 88 Query: 69 GARKVIVIEKDQQFFPILKDISSQH----------------------PNRLEIIQDDALK 106 GA V+ +E D +L + + H +RL ++ DAL+ Sbjct: 89 GAD-VVAVEIDPVLARLLPETVASHVPGLVRVDGPPDGPVVLRDAGGRDRLTVVLRDALE 147 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 V + P+ ++ANLPYN+ +L ++ E ++ Q EV +R+ A Sbjct: 148 V---EELPGPPPVALVANLPYNVSVPVLLTFLER---FDSLERALVMVQAEVADRLAAPP 201 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKI 225 S YG S W A + VF+P P V S ++ P+ E + + Sbjct: 202 GSRTYGVPSAKAAWYAHARRTATVGRSVFWPVPNVDSALVRLDRREPPVTTATREQVFTV 261 Query: 226 TQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 AF +RRK LR + E L AG++ R E L +E F RI L Sbjct: 262 VDAAFAQRRKMLRPALATLAGSAAAAEAALVAAGVDPQARGERLDVEAFARIAEHL 317 >gi|330944934|gb|EGH46747.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 189 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 5/186 (2%) Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 + Q DALK DF +R++ NLPYNI T L+F+ + + + + Q Sbjct: 3 NFNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFMLQ 59 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-P 214 KEV ER+ A +GRLS++ + + +F++ P F P PKV S ++ +P+ P Sbjct: 60 KEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPYETLP 119 Query: 215 IPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 P L++I +EAF +RRKTLR +LK L + + +G++ +LR E L + F R+ Sbjct: 120 HPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITASGVDGSLRPEQLDLAAFVRLA 179 Query: 274 NILTDN 279 + L++ Sbjct: 180 DTLSEK 185 >gi|57505363|ref|ZP_00371292.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195] gi|57016499|gb|EAL53284.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195] Length = 260 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 80/266 (30%), Positives = 122/266 (45%), Gaps = 16/266 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D IL KI ++ D ++EIG G G+LTQ LL + V E Sbjct: 2 IKAKKQYGQNFLHDKEILTKITQAI-PKDVKKIVEIGPGLGDLTQELLKISP--VKAYEI 58 Query: 79 DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D L+D + + ++ DA E F ++ANLPY I ++L+ Sbjct: 59 DADLIGFLRDKFQKELKEEKFILLHQDA----SELFCFDEDKYFLVANLPYYIASKLILQ 114 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + L ++ QKE+ + A+ S +G L VL+ + ++FD+SP F Sbjct: 115 ALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPLCFN 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253 P PKV S+V+ I C L+S K + F RK L +LK + L Sbjct: 171 PPPKVVSSVMRLIKQKELKQICELDSFKSFLRICFKSPRKQLLSNLKAEKCKLLELFEDL 230 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 G++ N+R L + + +I L D Sbjct: 231 GLKENVRPHELCVNSYLKIYEKLKDQ 256 >gi|150020142|ref|YP_001305496.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429] gi|149792663|gb|ABR30111.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429] Length = 258 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 15/251 (5%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 L Y + K +GQNFL + +I KKI E + + V+EIG G G LT+ L+ GA Sbjct: 5 DFLKEYNVKLLKGLGQNFLTNTHIAKKIVERADINENDVVLEIGPGAGTLTEFLVLTGA- 63 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 K+I +E D++ PIL + +++ N +EII D LK D +++AN+PY+I Sbjct: 64 KIIAVEIDKRLKPIL-ERFNKYDN-IEIIFVDFLKFDVSVL---PKGFKVVANIPYSITG 118 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +L + +D + L+ QKEVG+R+ LSV+ T +FD+S Sbjct: 119 MILKKILFSD-----FSKAVLMVQKEVGDRLLLPPG-ADRNFLSVVVQSYTMVRKVFDVS 172 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P PKV S V+ F ++ + FG +RKTL+ +LKR Sbjct: 173 KGNFVPRPKVDSVVLEFE-KTEDFKYDIKEFWDFVSKCFGAKRKTLQNNLKRFTRIECFS 231 Query: 252 QAGIETNLRAE 262 + + R + Sbjct: 232 K--FDLKKRPQ 240 >gi|242045762|ref|XP_002460752.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor] gi|241924129|gb|EER97273.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor] Length = 356 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 15/248 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +L I + G ++E+G G GNLT LL A +V+ +E Sbjct: 41 RFRLHKPRGQHLLTNPRVLDAIVRRAAISSGDAILEVGPGTGNLTARLLASHAARVVAVE 100 Query: 78 KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + + ++ ++L +I DA++V+F +F +AN+PY I + L+ Sbjct: 101 IDPRMVESVTARAAALGLADKLTVIAGDAVEVEFPEF------DVCVANIPYGISSPLIA 154 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + + TLL QKE R+ A Y RL+ ++ D+S F Sbjct: 155 KLLFG---PYRFRTATLLLQKEFARRLVATPGDGEYNRLAANVRLVADVRLLMDVSKRDF 211 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 P P+V S+++ P + T+ FG++ KTL K+ + ++ + Sbjct: 212 VPMPRVDSSLVEIRPRGIAPGVDVSEWLAFTRACFGQKNKTLGAIFKQ---KRMVMEL-F 267 Query: 256 ETNLRAEN 263 + RAE Sbjct: 268 GRSQRAEE 275 >gi|319777610|ref|YP_004137261.1| dimethyladenosine transferase [Mycoplasma fermentans M64] gi|238810000|dbj|BAH69790.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318038685|gb|ADV34884.1| Dimethyladenosine transferase [Mycoplasma fermentans M64] Length = 258 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 16/268 (5%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 K+ KK GQNFL D N++ KI E G ++EIG G G LT+ +L A++ Sbjct: 3 QENKLKAKKRYGQNFLKDQNVINKIIELIKPQ-GEKILEIGPGRGALTK-ILNQQAKEFT 60 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E DQ L+ + + N +I+Q D L D +K+ ++ N+PY I + ++ Sbjct: 61 AFEIDQDMVDYLQKNNILNQN--QIVQGDFLIADLKKY----KSYVVVGNIPYYITSDII 114 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + + ++ L+ Q EV +R+ A+ N Y +LS+ + + Sbjct: 115 FKLL---DYRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTY 171 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251 F P PKV S ++ N E+LK + F RRK L +L + + Sbjct: 172 FDPVPKVDSAIVSITFK-NEANDNYENLKDFFKLCFLARRKKLSFALATKYSNDKIKIAY 230 Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278 + ++ R + L ++ + + L + Sbjct: 231 NKLNLKELTRIQELDLKTILALYDCLEN 258 >gi|11499372|ref|NP_070611.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM 4304] gi|27151555|sp|O28491|RSMA_ARCFU RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|2648762|gb|AAB89464.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM 4304] Length = 244 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 24/256 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K +GQ+ L+D ++ +I + + V+E+G G GNLT LL V+ IEKD Sbjct: 4 RKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRKC--SVVGIEKDPL 61 Query: 82 FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L++ S R +IQ DALKVDF F + +AN+PY I + L F + Sbjct: 62 MVKRLRERFSDFIGKGRFRLIQGDALKVDFPYF------TKFVANIPYKISSPLTFKLLK 115 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 D + +++Q+E ER+ + N RL V++ KA ++ + P F P P Sbjct: 116 TD-----FRLAVVMYQREFAERLCGEDN-----RLGVISKTYCKAEILEIVKPSSFNPPP 165 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK---TLRQSLKRLGGENLLHQAGIE 256 KV S ++ +P E +K AF RRK + Q ++ G L + Sbjct: 166 KVESAIVRIVPEPEVFVENRELFEKFVTFAFSMRRKRMGKIVQEFRKRYGVELAVNKNLA 225 Query: 257 TNLRAENLSIEDFCRI 272 R E L F I Sbjct: 226 EK-RPEELGARKFAEI 240 >gi|302654957|ref|XP_003019274.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517] gi|291182988|gb|EFE38629.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517] Length = 364 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 26/233 (11%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + + + I + + TV+E+G G GNLT +L A Sbjct: 25 KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L P RLE++ D +K + Sbjct: 84 KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTE-------------------- 123 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ + P L+FQ+E R+ A+ Y RLSV K + Sbjct: 124 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 180 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P P V S+V+ +P + + + + AF ++ KTLR S Sbjct: 181 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233 >gi|302509638|ref|XP_003016779.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371] gi|291180349|gb|EFE36134.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371] Length = 364 Score = 201 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 26/233 (11%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 KT +H +GQ+ L + + + I + + TV+E+G G GNLT +L A Sbjct: 25 KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83 Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI +E D + L P RLE++ D +K + Sbjct: 84 KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTE-------------------- 123 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L F ++ + P L+FQ+E R+ A+ Y RLSV K + Sbjct: 124 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 180 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + F P P V S+V+ +P + + + + AF ++ KTLR S Sbjct: 181 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233 >gi|150399067|ref|YP_001322834.1| dimethyladenosine transferase [Methanococcus vannielii SB] gi|166221678|sp|A6UP00|RSMA_METVS RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|150011770|gb|ABR54222.1| dimethyladenosine transferase [Methanococcus vannielii SB] Length = 267 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 23/268 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL D N +KK +S+ + V+E+G G G LT+ L L A+ V VIE D + Sbjct: 4 SKKLGQCFLKDKNFVKKAIKSADITENDIVLEVGLGEGALTKELAKL-AKFVYVIELDMR 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P I S+ N +++I +DALKVD ++ +I+ANLPY I + + F ++ D Sbjct: 63 LEPFANQIMSEFKN-VKVIWNDALKVDLKEL----GFNKIVANLPYQISSPITFKFLEND 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 ++ L++Q E +R+ + ++ Y RLSV + + + + P F P P V Sbjct: 118 -----FDVAVLMYQYEFAKRMIGKPDTDEYSRLSVSIQYNSDVEFICKVPPTAFSPKPDV 172 Query: 202 TSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSL---------KRLGGENLLH 251 S ++ E + + F R +T++++L +R + +L Sbjct: 173 NSAIVKLTKREPLFHIENEEFFRNVLNAIFQHRNRTVKRALIDSSHEMNIERERLKEILE 232 Query: 252 --QAGIETNLRAENLSIEDFCRITNILT 277 + + + R L+ E ++NIL Sbjct: 233 NIKLDFDFSERVFKLAPEKIGELSNILY 260 >gi|171186169|ref|YP_001795088.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta] gi|170935381|gb|ACB40642.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta] Length = 227 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 33/253 (13%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ Q+FL D + + IAE G+ V+E+G G G LT L AR V IE D++ Sbjct: 3 RRRWSQHFLRDPSAARYIAEL--VPPGLDVLEVGPGRGALTIPLAER-ARTVYAIEVDRR 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L+ + P + +I+ DAL+V++ + ++N+PY+I + LL Sbjct: 60 LAELLRKTA---PPNVVVIEGDALEVEWPRA------DYFVSNIPYSITSPLLMKLARHR 110 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + Q+EV ER+ A +YGRL+V + ++ + P VF P P+V Sbjct: 111 MP------AVVTVQREVAERLAAAPGGENYGRLTVAVQCHYEVEVLRTLPPRVFQPPPRV 164 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI-ETNLR 260 S V+ P P + ++ T F RRKTLR+ G+ E + R Sbjct: 165 YSAVVRLTPR-PPCVEDFDGFQRFTAWLFSARRKTLRR-------------LGLGEGDRR 210 Query: 261 AENLSIEDFCRIT 273 LS+E+ + Sbjct: 211 VYQLSLEEIVELY 223 >gi|299740974|ref|XP_001834135.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea okayama7#130] gi|298404496|gb|EAU87730.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea okayama7#130] Length = 318 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+ L + +KI +++ V+E+G G GNLT +L A+ V +E D + Sbjct: 37 RFGQHILKNTQTAQKIVDAANLKPTDKVLEVGPGTGNLTVKILE-KAKHVTAVEMDPRMA 95 Query: 84 PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + P +LE+I D +K + F I+N PY I + L+F +S Sbjct: 96 AEVLKRVQGTPEQRKLEVIIGDFVKAEIPYF------EVCISNTPYQISSPLVFRLLSHR 149 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L+FQ+E R+ A+ + + RLS K + ++ + F P P+V Sbjct: 150 ---PLFRVAILMFQREFALRLVARPGTSLWSRLSANVQLYAKVDNIMHVNRNDFRPPPQV 206 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 S+VI +P P P E + + F + KT+R + + G +L Q Sbjct: 207 ESSVIRLVPLDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ 257 >gi|212543995|ref|XP_002152152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224] gi|210067059|gb|EEA21152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224] Length = 401 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I I + + + V G G G LT+ +L A+ IE Sbjct: 33 FKFNTDIGQHILKNPGIADAIVDKANIKEHEVV---GPGTGVLTRRILA-KAKSCTAIEL 88 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L + P +L II D +KVD ++ + I+N PY I + L+F Sbjct: 89 DPRMAAELTKMVQGTPMQKKLRIILGDFIKVDLKEIGHFD---VFISNTPYQISSPLVFK 145 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+ Q+E +R+ A+ Y RLSV + + + + + F Sbjct: 146 LLAMPRPP---RVSVLMVQREFAQRLIARPGDAMYSRLSVNAQFHAICSHILKVGKNNFS 202 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P+V S+V+ P + E L + + F ++ KTLR S L+ + Sbjct: 203 PPPQVESSVVKIEPRPDRPDISWEELDGMLRICFNRKNKTLRSSFFVKQVRELIER 258 >gi|327262970|ref|XP_003216295.1| PREDICTED: probable dimethyladenosine transferase-like [Anolis carolinensis] Length = 328 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 15/241 (6%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98 + + V+E+G G GN+T +L ++V+ E D + L+ P N+LE Sbjct: 65 KHASLYPTDVVLEVGPGTGNMTVKMLE-KVKRVVACEVDVKLAGELQKRVQGTPLANKLE 123 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 I D LK D F +ANLPY I + +F + PF+ L+FQ+E Sbjct: 124 IKIGDVLKSDLPFF------DACVANLPYQISSPFVFKLL---LHRPFFRCAVLMFQREF 174 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 R+ A+ SP Y RLSV T + + + + F P PKV S+V+ P P P Sbjct: 175 ALRLVAKPGSPLYCRLSVNTQLLARVDHLMKVGKNNFKPPPKVESSVVRIEPKNPPPPIN 234 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA-GIETNLRAENLSIEDFCRITNILT 277 + + + F ++ KTL + LL Q I + NL I + I N++ Sbjct: 235 FQEWDGLLRIVFVRKNKTLAAVFNSTAVKRLLEQNYRIHCSQ--NNLEIPENFNIGNLIH 292 Query: 278 D 278 + Sbjct: 293 E 293 >gi|229009551|ref|ZP_04166778.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048] gi|229053888|ref|ZP_04195323.1| Dimethyladenosine transferase [Bacillus cereus AH603] gi|229131049|ref|ZP_04259962.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196] gi|229165030|ref|ZP_04292826.1| Dimethyladenosine transferase [Bacillus cereus AH621] gi|228618415|gb|EEK75444.1| Dimethyladenosine transferase [Bacillus cereus AH621] gi|228652386|gb|EEL08310.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196] gi|228721429|gb|EEL72949.1| Dimethyladenosine transferase [Bacillus cereus AH603] gi|228751695|gb|EEM01494.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048] Length = 228 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%) Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRI 121 + A+KV+ E DQ+ PIL + + + N + +I D LK D + F + + Sbjct: 1 MAKRAKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMV 59 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +ANLPY I T +LF + ++ QKEVG+R+ A+ + YG LS+ + Sbjct: 60 VANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYY 116 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQ 239 T+ + + VF P P V S +I + P+ + ++ + +F +RRKTL Sbjct: 117 TEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMN 176 Query: 240 SLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +L + +L + GI+ R E LSIE+F ++N L Sbjct: 177 NLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 222 >gi|169351499|ref|ZP_02868437.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552] gi|169291721|gb|EDS73854.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552] Length = 268 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 140/282 (49%), Gaps = 20/282 (7%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + K IL Y + K GQNFL+D+N++ KI + + + VIE+G G G Sbjct: 1 MKDIATLSTTKYILDKYNLNALKKYGQNFLIDINVVNKIIKETRIDKDVAVIEVGPGIGA 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LTQML G KVI E D++F P+ + + LEII D +K + K Sbjct: 61 LTQMLSRYGG-KVISFEIDERFRPVYDEFL--IADNLEIIFGDFMKQEINKIVVDLKKTY 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 S + ++ANLPY I T ++ I +D + L ++ QKEV ++T+ +P L + Sbjct: 118 SKVYLVANLPYYITTAIIEKVILSDCN---IDQLIVMVQKEVALKMTSDYKNP----LLL 170 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 + K +F ++ +VF P+P V S +I + P + I F +RRKT Sbjct: 171 MIKDMGKVEYLFTVNKNVFLPAPHVDSAIIKIVLTKKPNLKLYD----ILNVCFKQRRKT 226 Query: 237 LRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +LK+ +L + I+T R+E LS+ DF IT+++ Sbjct: 227 IYNNLKKEYSNALEILEKCKIDTKKRSEELSLNDFKNITDMI 268 >gi|260221806|emb|CBA30735.1| hypothetical protein Csp_C25050 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 728 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 115/253 (45%), Gaps = 31/253 (12%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 + G ++EIG G LTQ L+ R + VIE D+ L+ HP +L +I+ Sbjct: 489 AINPQPGDPMVEIGPGLAALTQPLVERLGR-LTVIELDRDLAKRLR----SHP-QLHVIE 542 Query: 102 DDALKVDFEK-------------FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 D L VDF F ++ +R++ NLPYNI T +LF+ + E Sbjct: 543 SDVLNVDFSSADIAPAAPENAATFATVARKLRVVGNLPYNISTPILFHLLDYVEC---IE 599 Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 + QKEV +R+ A +S + RLSV+ WR + + P F P P+V S V+ Sbjct: 600 DQHFMLQKEVIDRMVAPPDSSDFSRLSVMLQWRYAMEDVLFVPPECFDPPPRVNSAVVRM 659 Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG----IETNLRAENL 264 +P P + ++ Q AF +RRK LR +L L Q G + RA+ + Sbjct: 660 VPLAQPPVLDVGLFSEMVQVAFSQRRKLLRHTLG-----AWLEQKGFSGQFDVQRRAQEV 714 Query: 265 SIEDFCRITNILT 277 +E++ + L Sbjct: 715 PVEEYVALVQSLK 727 >gi|225714488|gb|ACO13090.1| Mitochondrial dimethyladenosine transferase 1, mitochondrial precursor [Lepeophtheirus salmonis] Length = 330 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 134/283 (47%), Gaps = 23/283 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +P+K + QNF+LD L ++++ +GSL TV+E+G GPG +T+ +L GA+KV VIEK Sbjct: 3 FVPRKKLSQNFILDPKTLSRLSKVTGSLYNKTVVEVGPGPGGITRAILEQGAQKVFVIEK 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPIRIIANLPYNI 129 D +F P L + NRL I D L + +K N IR+I NLP+N+ Sbjct: 63 DSRFLPSLDLLREASGNRLSIKIGDCLHFNTQKLLNSDLKSNWPDQVPNIRLIGNLPFNV 122 Query: 130 GTRLLFNWISADTWPPFWESL-----TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 T + + S L FQ EV R+ A H RLSV+ K Sbjct: 123 ATPYVVKLFECMSDRSNIFSFGRVPSILTFQHEVAYRLIAPPGDKHRCRLSVMAQNYAKI 182 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTL-RQSLK 242 + + F P+P+V V IP P I + L+++ ++K++ R SL+ Sbjct: 183 DYKYTLPGAAFVPTPEVNVGVAVLIPLSVPYIDVPFKFLERVVTTIMMHKQKSVFRTSLR 242 Query: 243 RLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 E LL AG+ + R +L+++DF RIT D Sbjct: 243 LFPSEVRGKMAMQLLDVAGVSKDKRPLDLTMDDFARITYTYQD 285 >gi|307722062|ref|YP_003893202.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294] gi|306980155|gb|ADN10190.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294] Length = 271 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 18/268 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ ++ KK GQNFL D ++L++I E+ + ++EIG G G+LT+ L + + V Sbjct: 1 MNRESVVAKKKFGQNFLKDQSVLRQIVEAM-PKNDNKIVEIGPGLGDLTKFL--VDVKSV 57 Query: 74 IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 E D +L+ + RL I D L+ + +S P ++ANLPY I T Sbjct: 58 EAFEVDTDLCKLLQSTFKEEIATKRLHINCGDVLEAWQSEL--VSEPYDLVANLPYYIAT 115 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ ++ P +++ ++ Q EV E+ A +G L V+ A ++ + Sbjct: 116 NIILKALAD----PMCKNILVMVQLEVAEKFCASSGEKVFGSLGVIAQSVGTAQIVVKVP 171 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248 P F P PKV S V + + + + + AF + RKTL ++L + Sbjct: 172 PTAFDPQPKVDSAVFLIQKKRDR---NDKEFEDMLRVAFSQPRKTLVKNLSSKYDKKLLQ 228 Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNI 275 L + + +R ++ D+ ++ + Sbjct: 229 EALEELELALTIRPHQVNTNDYHQLYKL 256 >gi|149199506|ref|ZP_01876541.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155] gi|149137441|gb|EDM25859.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155] Length = 272 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 10/275 (3%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K L + L Y I P K GQNFL+D N+L + S G T++E+G G G LT+ + Sbjct: 2 KKAELLSTLEKYGIAPAKSRGQNFLIDNNLLDAMCRSMDIQAGETILEVGPGAGVLTREM 61 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L LG V +E D L + + + + DA KVD+++ ++ R +ANL Sbjct: 62 LKLGG-IVHAVEFDFAIQRYLSENLEH--EKFTLHKGDACKVDYKEILDLPREFRCLANL 118 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + +S PP + L Q+E+ ER+ A ++ +YG L+V Sbjct: 119 PYAISS-IFIAIMSELESPPL--EMYFLLQREMAERLAADNSTKNYGSLTVRVQALYDVN 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 ++ + P VFFP PKV S + NP P L+ L I + AF +RRK + +K Sbjct: 176 ILRIVPPEVFFPPPKVQSAFVTLKLKENPPSPKVLKKLNSIVRAAFSQRRKVAFKLMKGT 235 Query: 245 GG---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 G E G++ RAE ++IE + ++ L Sbjct: 236 AGPKLEEAYETVGLDRKARAEQITIEQYIQLAETL 270 >gi|327400294|ref|YP_004341133.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus veneficus SNP6] gi|327315802|gb|AEA46418.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus veneficus SNP6] Length = 250 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 18/254 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ ++ I ++IA + TV+E+G G G LT +LL A KV IE D +F Sbjct: 5 KSKGQH-IVSKAIARRIAGYAELSKKDTVLEVGCGTGVLTSVLLER-AGKVYGIEIDARF 62 Query: 83 FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +L++ ++ R +I DA+KV+F F + ++N+PY I + L F + Sbjct: 63 VKLLQEKFAKEIDEGRFILIHGDAMKVEFPPF------NKFVSNIPYFISSPLTFKLLRH 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D ++ +++Q+E ER+ A+K +YGRLSV+ K ++ +S F P P Sbjct: 117 D-----FDVAVVMYQREFAERLVARKGE-NYGRLSVVVKAYAKPEIVEYVSRKAFRPPPS 170 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--LLHQAGIETN 258 V S V+ I L+ + + + F +RRK L + L L Sbjct: 171 VDSAVVRLIKKPEIEVENLQIFEDLVRYCFSRRRKQLGKILDEWMESRGIWLEVPEELRR 230 Query: 259 LRAENLSIEDFCRI 272 LR E++ E + I Sbjct: 231 LRPEDIEPEVYAEI 244 >gi|291276278|ref|YP_003516050.1| putative dimethyladenosine transferase [Helicobacter mustelae 12198] gi|290963472|emb|CBG39302.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Helicobacter mustelae 12198] Length = 260 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 16/267 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 KK GQNFL D + + KI +S ++EIGAG G+L+ LL L K Sbjct: 2 GYQAKKKFGQNFLKDKDCIHKIIQSIPNIHTDEQIVEIGAGLGDLSDELLKLYPIK--AY 59 Query: 77 EKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 E D +L+ + RL++I D L + K + P +++NLPY + T ++ Sbjct: 60 EIDSDLCSLLRKKYHSALDSARLKLIHQDVLDLPNSKGWLHQEPYVLVSNLPYYVATHII 119 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 + P + ++ QKEV +R A+ H+ LS+LT + + +FD+ Sbjct: 120 LKILKD----PLCQGFVVMTQKEVAQRFCAKSGESHFCALSILTQTFGQVSYLFDVPAIA 175 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251 F P P+VTS V F + I E + + + AF RK L ++L + +L Sbjct: 176 FEPVPRVTSAVFSFKKN---IAMIDEDFENMLKIAFCAPRKKLLKNLATHYDKTVLQKVF 232 Query: 252 -QAGIETNLRAENLSIEDFCRITNILT 277 + I ++RA L ++ +I + Sbjct: 233 MELRIPLDVRAHQLENSNYHQIFEKIR 259 >gi|256384236|gb|ACU78806.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri str. GM12] gi|256385069|gb|ACU79638.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455258|gb|ADH21493.1| dimethyladenosine transferase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 266 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 15/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KKY GQNF+ DLN++ KI + +IEIG G G LT+ L+ KV+VIE Sbjct: 1 MKAKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVKRF-DKVVVIEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136 D+ ILK + + LEIIQ D L++D ++ + I II+N PY I + +LF Sbjct: 60 DKDMVEILKTKFNH--SNLEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + QKEV RI + KN +Y LS+ + ++ F ++ +F+ Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174 Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249 P PKV S +I + + + F +RKT + Sbjct: 175 PIPKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLLFNNKRKTILNNLNNIIQNKNKALEY 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+ I +NLR E L I+ + ++ N++ ++ Sbjct: 235 LNTLNISSNLRPEQLDIDQYIKLFNLIYNS 264 >gi|325957949|ref|YP_004289415.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium sp. AL-21] gi|325329381|gb|ADZ08443.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium sp. AL-21] Length = 273 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 28/274 (10%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL I K GQN+L++ +IL KI ++S V+EIGAG G LT L A K Sbjct: 8 ILKQNGIKLDKRKGQNYLVNRDILSKIIQNSELSKNDRVLEIGAGIGTLTIPLAK-NAGK 66 Query: 73 VIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 V +E+D + +LK + + +E+I +DA K+D ++I+NLPY I + Sbjct: 67 VYAVEQDGKAANVLKKRLEKLELDNVEVIVEDATKMDLPSV------NKVISNLPYQISS 120 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 + F + +E L++QKE +R+ A +Y RLSV+ ++A ++F +S Sbjct: 121 PITFKILENP-----FEMAVLMYQKEFAQRMVASPGDRNYSRLSVMMYLYSEAEILFQVS 175 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGE-NL 249 + FFP PKV S VI P I ++ +T+ F ++K +R +L E Sbjct: 176 ENDFFPKPKVASAVIKMQPK---IDVDIDPFFVDVTRAMFQHKKKKIRNALIDSYHEIGD 232 Query: 250 LHQAGIET----------NLRAENLSIEDFCRIT 273 + ++ ++T N R +S ED +I+ Sbjct: 233 VEKSDLKTIISQLDQTKMNERVFKMSPEDLLKIS 266 >gi|46121341|ref|XP_385225.1| hypothetical protein FG05049.1 [Gibberella zeae PH-1] Length = 346 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 8/225 (3%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + I I + TV+EIG G G LT +L A+ V +E Sbjct: 26 FKFNTNIGQHILKNPGIADTIVAKAYLKPTDTVLEIGPGTGVLTTRILEQ-AKAVKAVEL 84 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LEII D K+D + I+N PY I + ++ Sbjct: 85 DTRMAAELTKRVQGGPLQQKLEIIMGDFAKLDVVQAL--PPIDVCISNTPYQISSIIVSK 142 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 IS P L+ Q+E G R+ A+ Y RLSV T + +K +M+ + + F Sbjct: 143 LISMPKPP---RVSILMVQREFGLRLCARAGDSLYSRLSVNTQFTSKVSMVAKVGKNNFS 199 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 P P+V S V+ P + LE L + + F ++ KTLR S Sbjct: 200 PPPEVESVVVRIEPRTDVPAVGLEELDGVLRICFSRKNKTLRASF 244 >gi|76802475|ref|YP_327483.1| dimethyladenosine transferase [Natronomonas pharaonis DSM 2160] gi|119365037|sp|Q3IPM0|RSMA_NATPD RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|76558340|emb|CAI49930.1| probable dimethyladenosine transferase [Natronomonas pharaonis DSM 2160] Length = 274 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 115/253 (45%), Gaps = 25/253 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q+FL+D +L ++ V+EIG G G LT LL + A +V VIE+D Sbjct: 21 QHFLIDDRVLDRLPGYLPDSADTDHVLEIGGGTGALTDRLLDV-ADRVTVIERDPGLATF 79 Query: 86 LKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L D + L +I+ DAL+V F ++NLPY + + + F + Sbjct: 80 LTDEFADEIEAGSLTVIEGDALEVPLPDF------TASVSNLPYGVSSEIAFRLL----- 128 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P L L+FQ+E ER+ A+ + YGRLSV G ++ + F P P V S Sbjct: 129 -PEKRPLVLMFQQEFAERMAAEPGTDEYGRLSVTAGHYADVEVVEPVPKEAFSPPPAVES 187 Query: 204 TVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRL-------GGENLLHQAGI 255 V+ P P + L ++ + F +RRKT+R +++ E ++ AG Sbjct: 188 AVVRTTPREPPYEVPDDELFMRLVRAVFTQRRKTMRNAVRNTTHISGIEDAEAVVEAAGE 247 Query: 256 ET-NLRAENLSIE 267 + + RA N+ E Sbjct: 248 DLMSKRAGNVPPE 260 >gi|82705284|ref|XP_726907.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL] gi|23482506|gb|EAA18472.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii] Length = 423 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 58/328 (17%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS------------------- 45 + ++KT+L + PK+ +GQN+L D NI+KK+ ++ Sbjct: 95 DDEKNIKTLLPSREFKPKRSLGQNYLKDENIIKKMVQAIELDASQFVLMKEKKKKILLKS 154 Query: 46 -----------------------------LDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 +G +IE+G G G L++ L + + I Sbjct: 155 KKDKIKDETDEQNKLKINENNCKNMESLKNEGNGIIELGCGLGQLSKHLFK-KYKNMTAI 213 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLF 135 E D + I+ + I DD L+++++ N ++ + +I NLP+ I +++LF Sbjct: 214 EIDSRALTIISRTMPG----FDFIHDDVLQINYKDLSINKNTKLSVIGNLPFYITSQILF 269 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + E + Q EVG+RI A+ N Y LS+L T ++F I + F Sbjct: 270 CLL---DFYKYIEQAVVTIQYEVGQRIIAKPNDKDYSILSILFSLYTHPYLLFKIPSNAF 326 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 +P PKV + V+ I + C L LK+I + +F +RRK L+ SLKRL + + Sbjct: 327 YPIPKVEAAVMKIIFKKHIFNCNLLFLKQILKHSFQQRRKKLKSSLKRLLNMYNIQNVPL 386 Query: 256 E-TNLRAENLSIEDFCRITNILTDNQDI 282 ++LR + L E F +TNIL D Sbjct: 387 PFSDLRPQQLYPEQFIELTNILFPLHDY 414 >gi|297743975|emb|CBI36945.3| unnamed protein product [Vitis vinifera] Length = 284 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 39/242 (16%) Query: 15 SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 HY + K GQ+ L + ++ I E SG ++EIG G GNLT+ LL G + Sbjct: 19 KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77 Query: 73 VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 VI +E D + L+ P NRL++IQ D L+ D F +AN+PY I Sbjct: 78 VIAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLPYF------DICVANIPYQIS 131 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 + L F ++ P + ++FQ+E R+ AQ Y RLS Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLS--------------- 173 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 V S+V+ P P + + + F ++ KTL ++ +LL Sbjct: 174 ----------VDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 223 Query: 251 HQ 252 + Sbjct: 224 EK 225 >gi|284931020|gb|ADC30958.1| dimethyladenosine transferase [Mycoplasma gallisepticum str. F] Length = 268 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 20/280 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M NK + + + P K GQNFL+D NI+ KI E+ ++ V+EIG G G ++ Sbjct: 1 MINK---INKFFKNNEFSPSKQRGQNFLIDQNIINKIVEAVIKINPSKVLEIGPGLGAIS 57 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + L+ A IE D++ F L + + I+ DAL++D++ F+ + + Sbjct: 58 EQLIKRFADNYYAIELDKKLFHHLNEELLKD----HILHADALEIDWKSIFDNLGDNPTM 113 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 + NLPYNI ++L+ +I + + ++ QKE+G R+ A+ NS Y S L + Sbjct: 114 VGNLPYNISSKLIKKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYS 168 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + +I+ F P PKV ST++ E K+ F RRKT+ +L Sbjct: 169 LNVSKIIEINETAFIPQPKVRSTLLFLEKKDIAFNEGYEKFLKLI---FLSRRKTILNNL 225 Query: 242 KRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277 K L L G + RA+ LS + L+ Sbjct: 226 KNNYDSKLVIQSLVSLGFKKTSRAQELSPTQLFSLYESLS 265 >gi|331703024|ref|YP_004399711.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801579|emb|CBW53732.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 266 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 15/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KKY GQNF+ DLN++ +I + ++EIG G G LT+ L+ KV+VIE Sbjct: 1 MKAKKYYGQNFISDLNLINRIVDVLDQNKDQLIVEIGPGKGALTKELVKRF-DKVVVIEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLFN 136 DQ ILK + + LEIIQ D L++D ++ + I II+N PY I + +LF Sbjct: 60 DQDMVEILKTKFNH--SNLEIIQADVLELDLKQLISKYNYKNISIISNTPYYITSEILFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + QKEV RI + KN +Y LS+ + ++ F ++ +F+ Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174 Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249 P PKV S +I + + + F +RKT + Sbjct: 175 PIPKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLLFNNKRKTILNNLNNIIQNKNKALEY 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+ I +NLR E L I+ + ++ N++ ++ Sbjct: 235 LNTLNINSNLRPEQLDIDQYIKLFNLIYNS 264 >gi|328773161|gb|EGF83198.1| hypothetical protein BATDEDRAFT_85801 [Batrachochytrium dendrobatidis JAM81] Length = 326 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 38/309 (12%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI---TVIEIGAGPGNLTQMLL 66 L ++S Y + KK +GQNFLL + IA+ + + +E+G GPG LT+ LL Sbjct: 6 LPQLISIYNVHAKKALGQNFLLRPGVTDSIAQHAVAKKRDGKTLHVEVGPGPGGLTRSLL 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----------- 115 LG ++ +EKD P+L+ + + P+R + D L+ D + FN Sbjct: 66 KLGVTHLVAVEKDASVAPMLQILQASVPSRFRFLLGDMLESDQQVLFNQIMTEAVECDRL 125 Query: 116 --------------SSPIRIIANLPYNIGTRLLFNWISADTWPPFW-----ESLTLLFQK 156 + I+ NLPY+I + LL WI + +TL+ Q+ Sbjct: 126 SQPNSNSNPDNQPHFDKVHIVGNLPYSISSPLLHMWIKQAATEKYLFSFPKTEMTLMLQR 185 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NP 214 EV ERI A + GRLSVL M+ + +F P PKV ++ F PH Sbjct: 186 EVCERIAAPVGTKVRGRLSVLCQAFFDVKMLSVVDRKLFRPVPKVDGGILQFKPHAENRL 245 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGIETNLRAENLSIEDFCR 271 E+ + + +R LKR ++L + GI+ R+ + ++ + R Sbjct: 246 KDVPYETFAHLVKVLHHHPNSMIRAILKRHNLGKVIDVLTECGIDPTSRSFMVDVDSYIR 305 Query: 272 ITNILTDNQ 280 + T ++ Sbjct: 306 LARRCTHDR 314 >gi|242556502|pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi gi|242556503|pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 28/268 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ P Sbjct: 3 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPY- 60 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + + N +EII DALKVD K +++ANLPY I + + F I Sbjct: 61 ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLIKRG----- 111 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 ++ L++Q E +R+ A++ + YGRLSV R ++ + P F+P PKV S ++ Sbjct: 112 FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIV 171 Query: 207 HFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--------------KRLGGENLLH 251 P+ E+ + F R K++R++L K++ + L Sbjct: 172 KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNT 231 Query: 252 QAGIET--NLRAENLSIEDFCRITNILT 277 + I+ N + LS++D ++N Sbjct: 232 NSEIKNLINEKVFKLSVKDIVNLSNEFY 259 >gi|83319298|ref|YP_424004.1| dimethyladenosine transferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110032|sp|P43038|RSMA_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|83283184|gb|ABC01116.1| dimethyladenosine transferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 266 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 126/268 (47%), Gaps = 15/268 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KKY GQNF+ DLN++ KI + +IEIG G G LT+ L+ KV+VIE Sbjct: 1 MKAKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVKRF-DKVVVIEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136 DQ ILK + + LEIIQ D L++D ++ + I II+N PY I + +LF Sbjct: 60 DQDMVEILKTKFNH--SNLEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + QKEV RI + KN +Y LS+ + ++ F ++ +F+ Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174 Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249 P PKV S +I + + + + F +RKT + Sbjct: 175 PIPKVDSAIISLTFNNIYKKQINDDKKFIEFVRTLFNNKRKTILNNLNNIIQNKNKALEY 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277 L I +NLR E L I+++ ++ N++ Sbjct: 235 LKMLNISSNLRPEQLDIDEYIKLFNLIY 262 >gi|163783210|ref|ZP_02178204.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] gi|159881544|gb|EDP75054.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1] Length = 247 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 126/259 (48%), Gaps = 16/259 (6%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 KK GQ+ L+ +L++IA + V+EIG G GNLT++LL +++ V+E D Sbjct: 3 RLKKSYGQHLLVSKGVLERIASALEIEGKDIVVEIGGGTGNLTRVLLEHPLKRLYVLELD 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L I +RLE+I+ DA K DF ++++ NLPYN+G+ ++ N + Sbjct: 63 PDMVEKLSHIE---DSRLEVIRADASKFDFCSL---GEDLKVVGNLPYNVGSLIVENVVF 116 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 L+ QKEV +++ + S + LSV + + + P F P P Sbjct: 117 HHRC---VSVAVLMLQKEVALKLSGK-GSASW--LSVFLNTFYETEYVMSVPPRFFVPPP 170 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 KV S VI + P ++ K + F RRK LR+ L E+ L +AGI Sbjct: 171 KVDSGVIRCVRKEAPPELDMKRYKGFLTKLFADRRKMLRKKL----PEDTLSKAGISPKA 226 Query: 260 RAENLSIEDFCRITNILTD 278 R E LS+EDF R+ N+ + Sbjct: 227 RVEELSVEDFLRLYNVYEE 245 >gi|225734155|pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution gi|225734156|pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom Resolution gi|225734157|pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna gi|225734160|pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna And Sah Length = 249 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 16/261 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQ+ L+ +LKKIAE +G TV+E+G G GNLT++LL +K+ VIE Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ LK I RLE+I +DA K F ++ ++++ NLPYN+ + ++ N + Sbjct: 63 DREMVENLKSIG---DERLEVINEDASKF---PFCSLGKELKVVGNLPYNVASLIIENTV 116 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + QKEV E++ G LSV + + P F P Sbjct: 117 YNKDCVPL---AVFMVQKEVAEKLQ---GKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPP 170 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 PKV S VI + + L++ KK + F RRK LR+ + E LL +AGI + Sbjct: 171 PKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKI----PEELLKEAGINPD 226 Query: 259 LRAENLSIEDFCRITNILTDN 279 R E LS+EDF ++ ++ D+ Sbjct: 227 ARVEQLSLEDFFKLYRLIEDS 247 >gi|154174948|ref|YP_001407358.1| dimethyladenosine transferase [Campylobacter curvus 525.92] gi|171769251|sp|A7GVW6|RSMA_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|112802443|gb|EAT99787.1| dimethyladenosine transferase [Campylobacter curvus 525.92] Length = 285 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 22/277 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK+ GQNFL D +L KI ++ D ++EIG G G+LT +L + V E Sbjct: 2 IRAKKHFGQNFLQDEAVLNKIIQAI-PKDTQNIVEIGPGLGDLTFKILQIC--SVTAYEI 58 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + F +L ++ RL++ DAL+ E + ++ANLPY + T+++ + Sbjct: 59 DSELFALLGKKFAKEVQNGRLKLFCKDALEKWDEGGVSEQG-YFLVANLPYYVATKMILS 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + L ++ Q+EV + +A+ + L++L + ++FD+S F Sbjct: 118 AIDDEKC----RGLVVMIQREVALKFSAKSGESEFSSLAILANLQGSCELLFDVSAQCFN 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 P PKV S+VI + E K + AF RKTL ++L + Sbjct: 174 PPPKVVSSVIKIQKSKILLGESGIFKDKFEYEKFKIFLKIAFASPRKTLMKNLSAKFDKF 233 Query: 248 ---NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L + + +R L++E + +I L ++ + Sbjct: 234 ELNTLFAELNLSPAIRPHELNVELYLKIFENLKEDNE 270 >gi|167394422|ref|XP_001733536.1| dimethyladenosine transferase [Entamoeba dispar SAW760] gi|165894697|gb|EDR22603.1| dimethyladenosine transferase, putative [Entamoeba dispar SAW760] Length = 252 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 12/203 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + I ++I +++ V+EIG G GNLT +L +K+I IE Sbjct: 10 FQFHKSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPFC-KKLIAIEI 68 Query: 79 DQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + LK S + +LEIIQ D LKV+ F ++N PY+I + L+F Sbjct: 69 DPRMAAELKKRVSVTDYVKKLEIIQGDFLKVELPYF------DVCVSNTPYSISSPLVFK 122 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + S L+FQ+E R+ A+ P Y RLSV T + + + F Sbjct: 123 LLNHR---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFK 179 Query: 197 PSPKVTSTVIHFIPHLNPIPCCL 219 P PKV S+V+ IP P L Sbjct: 180 PPPKVESSVVRMIPVKPAPPLNL 202 >gi|15606866|ref|NP_214246.1| dimethyladenosine transferase [Aquifex aeolicus VF5] gi|27151558|sp|O67680|RSMA_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2984099|gb|AAC07637.1| dimethyladenosine transferase [Aquifex aeolicus VF5] Length = 248 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 16/261 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQ+ L+ +LKKIAE +G TV+E+G G GNLT++LL +K+ VIE Sbjct: 2 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ LK I RLE+I +DA K F ++ ++++ NLPYN+ + ++ N + Sbjct: 62 DREMVENLKSIG---DERLEVINEDASKF---PFCSLGKELKVVGNLPYNVASLIIENTV 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + QKEV E++ G LSV + + P F P Sbjct: 116 YNKDCVPL---AVFMVQKEVAEKLQ---GKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPP 169 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 PKV S VI + + L++ KK + F RRK LR+ + E LL +AGI + Sbjct: 170 PKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKI----PEELLKEAGINPD 225 Query: 259 LRAENLSIEDFCRITNILTDN 279 R E LS+EDF ++ ++ D+ Sbjct: 226 ARVEQLSLEDFFKLYRLIEDS 246 >gi|300870168|ref|YP_003785039.1| putative dimethyladenosine transferase [Brachyspira pilosicoli 95/1000] gi|300687867|gb|ADK30538.1| putative dimethyladenosine transferase [Brachyspira pilosicoli 95/1000] Length = 283 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 18/283 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQ 63 + L I P K GQNFL D NI IA + L G IEIG G G+L+ Sbjct: 7 SKSEITEYLKSKSIFPNKNRGQNFLCDRNIAYNIANTVPKDILRGDYAIEIGGGLGSLSN 66 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 +L+ + + ++E D + LK+ + II +D LKV+ + + + Sbjct: 67 VLVDIYKNNLTIVEYDNALYNHLKETYKD----INIIHNDILKVNINDI-DKNKNFDVYG 121 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+PYNI + ++ W + Q + R+ A++ S Y L++ + + Sbjct: 122 NIPYNIASPIIEWLF--CDCYNRWNYAVFMVQSDFANRLIAKEGSEDYSALTLFASFMSD 179 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 + +++S VF+P PKVTS++I P + L K +++ F RRKT++ + + Sbjct: 180 IKLEYNVSKEVFYPIPKVTSSIISIKPKEVDLSM-LNIFKSVSKTLFHNRRKTIKNNFLK 238 Query: 244 L--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + +L +A I+ +R E+LSIE ++ I+ D Sbjct: 239 SPYIDIDKDKIDEILEKANIDKEIRGESLSIEKVKELSLIIKD 281 >gi|115472299|ref|NP_001059748.1| Os07g0509600 [Oryza sativa Japonica Group] gi|113611284|dbj|BAF21662.1| Os07g0509600 [Oryza sativa Japonica Group] Length = 347 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 11/228 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +L I + G V+E+G G GNLT LL A +V +E Sbjct: 23 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 82 Query: 78 KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + + ++L +I+ DA++ +F +F +AN+PY I + L+ Sbjct: 83 IDPRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIA 136 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + + TLL QKE R+ A Y RL+ A ++ D+S F Sbjct: 137 KLLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDF 193 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 P PKV S+++ P L T+ FG++ KTL K+ Sbjct: 194 VPMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 241 >gi|154149286|ref|YP_001407258.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381] gi|171769706|sp|A7I417|RSMA_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|153805295|gb|ABS52302.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381] Length = 269 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 117/268 (43%), Gaps = 20/268 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK GQNFL D N L KI ES + ++EIGAG G+LT LL KV E D+ Sbjct: 4 AKKKFGQNFLKDKNALNKIIESI-PENAENIVEIGAGLGDLTYELLRK--FKVKSYEIDK 60 Query: 81 QFFPILKDISS-QHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 LK + + NR E++ DALK N ++ANLPY + T ++ I Sbjct: 61 DLIEFLKSKFACELENRKFELVFGDALKFWKNGLCN--KNYFLVANLPYYVATNMILKAI 118 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + QKEV E+ A+ +G +SVL K +F + F P+ Sbjct: 119 DDE----LCDGFVAMVQKEVAEKFCAESGDSEFGGISVLADIFGKCEFLFSVPADSFEPA 174 Query: 199 PKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250 PKV S VI E+ K + F RKT+ ++L + +L Sbjct: 175 PKVVSAVIRLKKTRKIDDIFENSVQYENFKNFLKICFSSPRKTIMKNLSTKFDKEILQSI 234 Query: 251 -HQAGIETNLRAENLSIEDFCRITNILT 277 + + TNLRA L+ F +I L Sbjct: 235 FEKLDLTTNLRAHELNFTLFFKIFKNLR 262 >gi|305432594|ref|ZP_07401755.1| dimethyladenosine transferase [Campylobacter coli JV20] gi|304444305|gb|EFM36957.1| dimethyladenosine transferase [Campylobacter coli JV20] Length = 264 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 16/265 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK+ GQNFL D +IL KI ++ D ++EIG G G+LTQ LL + V E Sbjct: 2 MKAKKHYGQNFLNDKSILSKIIQAI-PKDTENIVEIGPGLGDLTQELLKVS--HVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PIL+ + +L ++ DA K+ ++ANLPY + + L+ Sbjct: 59 DDDLIPILRKKFQKELDCGKLNLLHQDASKLACFD----EKKYFLVANLPYYVASHLILQ 114 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ + A + L VL+ + ++FD+ P F Sbjct: 115 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 170 Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I C + + K ++ F RK L +LK + L + Sbjct: 171 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 230 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 + NLR L ++ + +I + + Sbjct: 231 KLNLNLRPHELCVDSYLKIYEKVKE 255 >gi|57504575|ref|ZP_00370687.1| dimethyladenosine transferase [Campylobacter coli RM2228] gi|57019470|gb|EAL56164.1| dimethyladenosine transferase [Campylobacter coli RM2228] Length = 263 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 16/265 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK+ GQNFL D +IL KI ++ D ++EIG G G+LTQ LL + V E Sbjct: 1 MKAKKHYGQNFLNDKSILSKIIQAI-PKDTENIVEIGPGLGDLTQELLKVS--HVKAYEI 57 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PIL+ + +L ++ DA K+ ++ANLPY + + L+ Sbjct: 58 DDDLIPILRKKFQKELDCGKLNLLHQDASKLACFD----EKKYFLVANLPYYVASHLILQ 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ QKE+ + A + L VL+ + ++FD+ P F Sbjct: 114 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 169 Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I C + + K ++ F RK L +LK + L + Sbjct: 170 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 229 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 + NLR L ++ + +I + + Sbjct: 230 KLNLNLRPHELCVDSYLKIYEKVKE 254 >gi|242556505|pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 123/268 (45%), Gaps = 28/268 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ P Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPY- 58 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + + N +EII DALKVD K +++ANLPY I + + F I Sbjct: 59 ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLIKRG----- 109 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 ++ L++Q E +R+ A + YGRLSV R ++ + P F+P PKV S ++ Sbjct: 110 FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIV 169 Query: 207 HFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--------------KRLGGENLLH 251 P+ E+ + F R K++R++L K++ + L Sbjct: 170 KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNT 229 Query: 252 QAGIET--NLRAENLSIEDFCRITNILT 277 + I+ N + LS++D ++N Sbjct: 230 NSEIKNLINEKVFKLSVKDIVNLSNEFY 257 >gi|299137112|ref|ZP_07030295.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8] gi|298601627|gb|EFI57782.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8] Length = 295 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 79/289 (27%), Positives = 117/289 (40%), Gaps = 34/289 (11%) Query: 22 KK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQNFL+D + +I+ES G TV+EIG G G +T +L A + IE D Sbjct: 3 KKPKLGQNFLVDESACLRISESLGDTRARTVVEIGPGHGAITDLLAPRCAL-LHCIEFDP 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKF------------------------FNIS 116 L P+ + I D L+ D + + + Sbjct: 62 ALARELAFRFRNDPH-VTIHNADILQTDLSQLESQNSNLEAESSSLNPSSLLAEPTPSPA 120 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 + + +I NLPY I + +L + A L+ Q+EV ERI + S YG LS Sbjct: 121 ATLDVIGNLPYYITSDILLHLFVAARKG-ILARAVLMMQREVAERIASAPGSSDYGALSA 179 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRR 234 T T +F + P F P P V STV+ F P + E + F ++R Sbjct: 180 FTQLHAHVTNLFTLPPEAFSPPPDVYSTVLRLDFAPRFTELGVEPEGFNSFLRSTFAQKR 239 Query: 235 KTLRQSLKRLG-GENLLHQA---GIETNLRAENLSIEDFCRITNILTDN 279 KTL +L+ G L I R+E + +E + L+ N Sbjct: 240 KTLANNLRVAGYSSAQLTSVWPTSIPAQARSEAVPLEAMAELYRALSTN 288 >gi|125600382|gb|EAZ39958.1| hypothetical protein OsJ_24395 [Oryza sativa Japonica Group] Length = 358 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 11/228 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +L I + G V+E+G G GNLT LL A +V +E Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93 Query: 78 KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + + ++L +I+ DA++ +F +F +AN+PY I + L+ Sbjct: 94 IDPRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIA 147 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + + TLL QKE R+ A Y RL+ A ++ D+S F Sbjct: 148 KLLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDF 204 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 P PKV S+++ P L T+ FG++ KTL K+ Sbjct: 205 VPMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 252 >gi|319955820|ref|YP_004167083.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511] gi|319418224|gb|ADV45334.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511] Length = 286 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 17/267 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 K GQNFL D +++++I +S D + V+EIG G G+LT+ L+ + R V E D+ Sbjct: 12 ADKRFGQNFLEDRSVVEQIIQSM-PDDDLPVVEIGPGLGDLTKELVRV--RPVTAFEVDK 68 Query: 81 QFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + L S+ RL + D L+ I P R++ANLPY I T ++ + Sbjct: 69 RLCDYLGKNFSREIADGRLRLECGDVLERWKNGSL-IDRPYRLVANLPYYIATNIILKAL 127 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P S + QKEV E+ A++ ++ LSVL G +A + + P F P Sbjct: 128 RD----PHCRSTLTMVQKEVAEKFAAREGDRNFSALSVLAGSVGEARIRLLVPPSAFNPP 183 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAG 254 PKV S V+ N E+ + AF + RKTL ++L ++LL Sbjct: 184 PKVESAVLEIRKEHNLTDGGFEAF---LKAAFRQPRKTLMKNLSAAYPKSLLEPLFEALK 240 Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281 + LR + + R+ LT D Sbjct: 241 LGKTLRPHQVGTTLYHRLYQALTKEPD 267 >gi|125558476|gb|EAZ04012.1| hypothetical protein OsI_26151 [Oryza sativa Indica Group] Length = 358 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 11/228 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +L I + G V+E+G G GNLT LL A +V +E Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93 Query: 78 KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + + ++L +I+ DA++ +F +F +AN+PY I + L+ Sbjct: 94 IDPRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIA 147 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P + + TLL QKE R+ A Y RL+ A ++ D+S F Sbjct: 148 KLLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDF 204 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 P PKV S+++ P L T+ FG++ KTL K+ Sbjct: 205 VPMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 252 >gi|300681352|emb|CAZ96099.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570] Length = 333 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 28/285 (9%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 60 STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQ 119 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------SSP 118 GA V +EKD+ ++KD +L++I++D K F Sbjct: 120 AGA-TVFAVEKDKHMAALVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKCHATKKL 177 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177 ++++NLP+N+ T ++ + + + L+ Q E R+ A SP Y ++V Sbjct: 178 AKVVSNLPFNVSTEVVRLLL---PMGDVFSVVVLMLQDETAVRLADASIQSPEYRLINVF 234 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKT 236 + ++ F ++ FFP PKV VI F + + P AF +RK Sbjct: 235 VNFYSEPEYKFRVNRENFFPQPKVDGAVISFKLKNAEEYPP--------VNSAFMGKRKM 286 Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277 LR+SL+ L + + A G+ R +L ++DF R+ N LT Sbjct: 287 LRKSLQHLCSSSEIESALGNIGLPVTARPSDLILDDFVRLHNHLT 331 >gi|223038498|ref|ZP_03608792.1| dimethyladenosine transferase [Campylobacter rectus RM3267] gi|222880355|gb|EEF15442.1| dimethyladenosine transferase [Campylobacter rectus RM3267] Length = 287 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 22/277 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D L KI ++ D ++EIGAG G+LT +L + V E Sbjct: 4 IKAKKRFGQNFLQDEATLNKIIQAI-PKDTQNIVEIGAGLGDLTFRILRICG--VTSYEI 60 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + F +L+ + RL++ DAL V +++ P + ANLPY + T+++ + Sbjct: 61 DTELFALLQKKFANEIQNGRLKLFCKDAL-VQWDESGLSDEPYFLAANLPYYVATKMILS 119 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + ++ QKEV + +A+ + L++L + ++FD+ F Sbjct: 120 AVEDERC----RGMVVMIQKEVALKFSAKSGDRDFSSLAILASLQGSCELLFDVDASCFN 175 Query: 197 PSPKVTSTVIHFIPHLNPIPC--------CLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 P PKVTS+VI N I E K + AF RKTL ++L + Sbjct: 176 PPPKVTSSVIKLQKSKNLIGETGVFKSEFEYEKFKIYLKIAFNAPRKTLMRNLSQGFEKP 235 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 E + + N+R L+++ + I L ++ + Sbjct: 236 KIERIFSLLNLSANIRPHELNVDLYLEIFKNLKEDNE 272 >gi|42560564|ref|NP_975015.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|62900540|sp|Q6MUM4|RSMA_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|42492060|emb|CAE76657.1| Dimethyladenosine transferase KsgA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320542|gb|ADK69185.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 266 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 15/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KKY GQNF+ DLN++ +I + +IEIG G G LT+ L+ KV+VIE Sbjct: 1 MKAKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVKRF-DKVVVIEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136 DQ ILK + LEIIQ D L++D ++ + I II+N PY I + +LF Sbjct: 60 DQDMVEILKAKFDH--SNLEIIQADVLEIDLKQLISKYDYEKISIISNTPYYITSEILFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + QKEV RI + KN +Y LS+ + ++ F ++ +F+ Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174 Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249 P PKV S +I + + + + F +RKT + Sbjct: 175 PIPKVDSAIISLTFNDIYKKQINDDKKFIEFVRILFNNKRKTILNNLNNIIQNKNKALEY 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L+ I +NLR E L I+++ ++ N++ + Sbjct: 235 LNTLNISSNLRPEQLDIDEYIKLFNLVYTS 264 >gi|68066927|ref|XP_675435.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA] gi|56494621|emb|CAH94666.1| dimethyladenosine transferase, putative [Plasmodium berghei] Length = 362 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 61/331 (18%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS------------------- 45 + +LKT+L + PK+ +GQN+L D NI+KK+ ++ Sbjct: 22 DDEQNLKTLLPSREFKPKRSLGQNYLKDENIIKKMIQAIELDSSQFVLMKEKKKKKNLLK 81 Query: 46 --------------------------------LDGITVIEIGAGPGNLTQMLLTLGARKV 73 +G +IE+G G G L++ L + + Sbjct: 82 SKKDKIQDETDEKNKLKINENNCNSKNMESLKNEGKGIIELGCGLGQLSKHLFK-KYKNM 140 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTR 132 IE D + I+ + I DD L++++++ N ++ + +I NLP+ I ++ Sbjct: 141 TAIEIDSRALTIISRTMPG----FDFIHDDVLQINYKELSINKNTKLSVIGNLPFYITSQ 196 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 +LF + + + E + Q EVG+RI A++N Y LS+L T ++F I Sbjct: 197 ILFCLLD---FYKYIEQAVVTIQYEVGQRIVAKQNDKDYSILSILFSLYTHPYLLFKIPS 253 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 + F+P PKV + V+ I + C L LK++ + AF +RRK L+ SLK L + Sbjct: 254 NAFYPIPKVEAAVMKIIFKKHNFNCNLLFLKQVLKHAFQQRRKKLKSSLKGLLNMYNIQN 313 Query: 253 AGIE-TNLRAENLSIEDFCRITNILTDNQDI 282 + ++LR + L E F +TNIL D Sbjct: 314 LPMAFSDLRPQQLYPEQFVELTNILFPLHDY 344 >gi|269114782|ref|YP_003302545.1| Dimethyladenosine transferase [Mycoplasma hominis] gi|268322407|emb|CAX37142.1| Dimethyladenosine transferase [Mycoplasma hominis ATCC 23114] Length = 257 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 16/266 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I K +GQNFL + NI K+I +++ + G +IEIG G G +T + + +++ IE Sbjct: 2 IKALKSLGQNFLSNKNIQKEIVKAANVV-GKNIIEIGPGMGAITDQMADV-VNRLVCIEF 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ + L + + + +EI+ D L+ D K+ + +I N+PYNI + ++F + Sbjct: 60 DKRLYEFL--LQKNYSSNVEILNQDFLQTDLLKYTD----FEVIGNIPYNITSDIIFKLL 113 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 +TL+ QKEV +RI + Y +L+ + +F + F P+ Sbjct: 114 DNAKN---INKITLMVQKEVADRICCGAGNSQYSKLAASIQLLYEPKYLFTVKAKEFNPA 170 Query: 199 PKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQA 253 PKV S VI I + + I + K ++ F +RKTL + + + L Sbjct: 171 PKVDSAVIQLNLIKNNDFIWNNQVEILKFIKQMFQYKRKTLLNNFPSNLKQKISDFLKSN 230 Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279 ++ N+RAE ++ E + + + Sbjct: 231 ELDLNIRAEKITKEISINLFKFINNK 256 >gi|255323625|ref|ZP_05364755.1| dimethyladenosine transferase [Campylobacter showae RM3277] gi|255299339|gb|EET78626.1| dimethyladenosine transferase [Campylobacter showae RM3277] Length = 287 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 22/278 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I KK GQNFL D L KI ++ D ++EIG G G+LT +L + V E Sbjct: 3 NIKAKKCFGQNFLHDEATLNKIIQAI-PKDTQNIVEIGPGLGDLTFRILRICG--VTSYE 59 Query: 78 KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + F +L+ + RL++ DAL E + P + ANLPY + T+++ Sbjct: 60 IDTELFALLQKKFANEIQNGRLKLFCKDALDQWSEDGLS-YEPYFLAANLPYYVATKMIL 118 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 N I + L ++ QKEV + +A+ + L++L + ++FD++ F Sbjct: 119 NAIEDEKC----RGLVVMIQKEVALKFSAKSGDRDFSSLAILASLQGGCELLFDVAASCF 174 Query: 196 FPSPKVTSTVIHFIPHLNPIPC--------CLESLKKITQEAFGKRRKTLRQSLKRLG-- 245 P PKVTS+VI N I E K + F RKTL ++L Sbjct: 175 NPPPKVTSSVIKLQKSKNLIGETGVFKSKFEYEKFKTYLKIVFSAPRKTLMKNLSSSYER 234 Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 E + + ++R L+++ + + L ++ + Sbjct: 235 PEIERIFSMLNLSAHIRPHELNVDLYLEVFKNLKEDNE 272 >gi|256084910|ref|XP_002578668.1| dimethyladenosine transferase [Schistosoma mansoni] gi|238664049|emb|CAZ34906.1| dimethyladenosine transferase, putative [Schistosoma mansoni] Length = 295 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 46/269 (17%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 SL+ I+ Y I +K + QNFLL + + + + +G+L G V+E+G GPG +T+ + Sbjct: 22 PLPSLREIIHVYGIRAQKQLSQNFLLQPSSINGLVKCAGNLRGAYVLEVGPGPGGITRAI 81 Query: 66 LTLGARKVIVIEKDQQFFPILKDI---SSQHPNRLEIIQDDALKVDFEKFFNI------- 115 L R V V+E D++F P L+++ + + +++I + D LK + E F I Sbjct: 82 LQKAPRHVAVVELDRRFIPGLQELRLAALEMGTQMDIYRQDILKFNCEGIFPISSMTGAG 141 Query: 116 ------------------------------SSPIRIIANLPYNIGTRLLFNWIS-----A 140 S + +I NLP+NI T L+ W+ Sbjct: 142 AWDESPEVVNSNLVKSTSENQNETALEKVSSPRLCVIGNLPFNISTPLISQWLHDIAERR 201 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 W LTL FQKEV ER+ A RLSV++ M DI F P PK Sbjct: 202 GIWRYGRVPLTLTFQKEVAERLAADVWDEQRSRLSVMSQAYCDVKYMKDIPGTAFVPPPK 261 Query: 201 VTSTVIHFIPHLNP-IPCCLESLKKITQE 228 V V+ IP P IP ++K+T+ Sbjct: 262 VDVGVVRLIPLKQPLIPVPYPYVEKLTKA 290 >gi|289580774|ref|YP_003479240.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099] gi|289530327|gb|ADD04678.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099] Length = 281 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 23/249 (9%) Query: 13 ILSHYKII--PKKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTL 68 +++ + P + Q+FL+D +L ++ +D T V+EIG G G LT LL Sbjct: 7 LIARAGVRGDPNRD--QHFLVDDRVLDRLPTYLTDIDADTSHVLEIGGGTGVLTDRLLET 64 Query: 69 --GARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 ++ V+E+D L++ S RL +I+ DAL+VD +F + ++N Sbjct: 65 IGADDQLTVVERDPPLAEFLQEEFSDAIDAGRLTVIEGDALEVDLPEFTSS------VSN 118 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY + + + F + P L L+FQ+E ER+ A+ N+ YGRLSV T A Sbjct: 119 LPYGVSSEITFRLL------PEQRPLVLMFQQEFAERMVAEPNTSEYGRLSVSTQHYADA 172 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243 ++ I F P P V S V+ +P E+ + + F +RRKT+R ++ Sbjct: 173 ELVESIPKEAFSPPPAVQSAVVRLVPREPEYDVENEAFFLRFVKALFTQRRKTIRNGIRN 232 Query: 244 LGGENLLHQ 252 + L + Sbjct: 233 TAHISGLQK 241 >gi|288559416|ref|YP_003422902.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium M1] gi|288542126|gb|ADC46010.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium M1] Length = 298 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 119/247 (48%), Gaps = 24/247 (9%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + K IL I K +GQN+L+D KKI + TV+EIG G G LT L Sbjct: 8 AKQTKRILQENDIKLNKNLGQNYLIDDFKRKKIINYANLTKEDTVLEIGPGIGTLTIELA 67 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 A+KVI IE+D+ F ILK + N +E+I DA+KVDF +F +I++NL Sbjct: 68 KR-AKKVIAIEQDETIFNILKKRLEKEKINNVELINGDAVKVDFPEF------NKIVSNL 120 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY I + + F +++ D ++ L++QKE +R+ + + Y RLS + ++ Sbjct: 121 PYQISSPISFKFLNHD-----FDLAILMYQKEFADRMNGKVGTKQYSRLSAMLYFKADVK 175 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-----------NPIPCCLESLKKITQEAFGKRR 234 + +SP F PSPKV S VI P ++ K+ + F R Sbjct: 176 FLTKVSPESFIPSPKVDSAVIQLKPKNIDSIRINDKEYEIDKETYKTYSKVVKALFQHRN 235 Query: 235 KTLRQSL 241 K R +L Sbjct: 236 KKARNAL 242 >gi|189218276|ref|YP_001938918.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum infernorum V4] gi|189185134|gb|ACD82319.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum infernorum V4] Length = 271 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 25/277 (9%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66 +K++LS + P K +GQNFL+D N+ K I + G + EIG G G+LT+ L Sbjct: 5 EIKSLLSSNHLSPSKKLGQNFLIDQNLAKFIVRETLEGVPLPQEIYEIGPGLGSLTEFFL 64 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + IE D+ F +L + S +P R E+IQ +AL F + + ++ NLP Sbjct: 65 QQNV-FLKAIEIDRGFCKVLLERFSANP-RFELIQANALDFSFPQSTHGK---ILVGNLP 119 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + LL P + Q+EV R+ A+ + +G LSVL + + Sbjct: 120 YTISSPLLAKLALLAVPFP---RMIFTLQQEVASRLMAKTRTKDFGALSVLMQYFFEIKK 176 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243 M + VF+P PK+ S V+ F P + F +RRK L + L Sbjct: 177 MRKVPKEVFYPVPKIESAVVFFEPKNTAFRMDAPEKYSFYAFVRRCFSQRRKKLGKILH- 235 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 I + R + + E + + L D++ Sbjct: 236 -----------IPLDHRPDEIPPECWANLWMELKDSR 261 >gi|152993938|ref|YP_001359659.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1] gi|151425799|dbj|BAF73302.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1] Length = 284 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 17/275 (6%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 I+ + K GQNFL L++I ++ DG+ V EIG G G+LT+ L + AR Sbjct: 2 IIENLAEFASKKFGQNFLKSDYYLQQIIQAM-PNDGLRVAEIGPGLGDLTKEL--VKARN 58 Query: 73 VIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 V E D++ L + H E+ D L+ + P ++ANLPY I Sbjct: 59 VTAFEVDKRLCEHLTSEFEEPIHNGSFELRCGDVLERWASGSL-LDEPYHLVANLPYYIA 117 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T ++ + + S+ ++ QKEV + A+ + LSVL KAT+ F++ Sbjct: 118 TNIILKALKDEHC----RSVLVMVQKEVAVKFAAEAGEKAFSALSVLASTVGKATLCFEV 173 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL- 249 F P P VTS V+ + + E + + AF + RK L ++L ++L Sbjct: 174 EREAFVPPPNVTSAVLLIEKNRS---FDDEKFEAFLKIAFSQPRKKLSKNLMTAFPKDLV 230 Query: 250 ---LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 + + + +R + + N L DN D Sbjct: 231 KKTFAELELPSTMRPHEAGTSIYHHLYNELKDNLD 265 >gi|42522227|ref|NP_967607.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100] gi|62900539|sp|Q6MQ47|RSMA_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39574758|emb|CAE78600.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100] Length = 274 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 21/283 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M+ L+ I KK +GQNFL+ ++ +I + + ++E+G GPG L Sbjct: 1 MSYSRERLQRAQEAMGIAAKKSLGQNFLVSDTVINRIIDQVKAFAPEELVEVGPGPGAL- 59 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + +IE D ++ L +I+ DAL++D+++F+ + + Sbjct: 60 TDLLLELNLPLQLIELDSAIAAYWREKG------LTVIEQDALRLDWKQFYT-GKRVVFV 112 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY I + ++ I ++ L+FQKEV ++I +S YG LSV Sbjct: 113 SNLPYQISSSIV---IERSLENEGVAAMVLMFQKEVAQKIRGTVDSDLYGLLSVYAQAFW 169 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 K + D P F P PKV S V+ F + ++ + AF +RRK L+++L Sbjct: 170 KIETVTDAGPRDFQPPPKVASRVLSFE-RIESEVKNRKAFLTFVKCAFAQRRKLLKKNLS 228 Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276 L + L + G + RAE LS + F + Sbjct: 229 GLLSQKKLTEEQMVGWLAELGFKETARAEELSPKQFVALYKHF 271 >gi|33861490|ref|NP_893051.1| dimethyladenosine transferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|62900569|sp|Q7V1E1|RSMA_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|33634067|emb|CAE19392.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 277 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 12/267 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQ++L++ IL+KI E + + ++EIG G G LT LL ++ IE Sbjct: 5 NHHQKKRFGQHWLVNNLILEKIKEVAELEEKDFILEIGPGRGALTSKLLDSKISRLHAIE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ +L + ++ + Q D L + + ++IAN+PYNI +L + Sbjct: 65 LDEDLIDLLNNKF-RNDKNFSLQQGDILSTNLDSI--NKKITKVIANIPYNITGPILDIF 121 Query: 138 ISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + L QK+V +RI A+ + + G +SV + + D+ P F Sbjct: 122 VGRLGIISKNNYNKIIFLMQKDVVDRILAKDGNTNAGAMSVRMQLISNIRRICDVPPSSF 181 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV ST++ F P + ++ L K+ + +F RRK +R +L + + + Sbjct: 182 DPPPKVFSTLVVFEPLRPEMRLDIKLEKYLDKLLRISFNSRRKMIRNTLNSILSAEEIEK 241 Query: 253 AG----IETNLRAENLSIEDFCRITNI 275 I N R +++SI + ++ Sbjct: 242 LSESSQICFNSRPQDISINKWIKLAEA 268 >gi|313664894|ref|YP_004046765.1| dimethyladenosine transferase [Mycoplasma leachii PG50] gi|312949380|gb|ADR23976.1| dimethyladenosine transferase [Mycoplasma leachii PG50] Length = 266 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 15/270 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KKY GQNF+ DLN++ +I + +IEIG G G LT+ L+ KV+VIE Sbjct: 1 MKAKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVKRF-NKVVVIEI 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136 DQ ILK + LEIIQ D LK+D ++ + I II+N PY I + +LF Sbjct: 60 DQDMVEILKAKFD--YSNLEIIQTDVLKIDLKQLISKYDYEKISIISNTPYYITSEILFK 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + QKEV RI + KN +Y LS+ + ++ F ++ +F+ Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNRKMFY 174 Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249 P PKV S +I + + + + F +RKT + Sbjct: 175 PIPKVDSAIISLTFNDIYKKQINDDKKFIEFVRILFNNKRKTILNNLNNIIQNKNKALEY 234 Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279 L + I +NLR E L I+++ ++ N++ + Sbjct: 235 LKISNISSNLRPEQLDIDEYIKLFNLIYTS 264 >gi|296271693|ref|YP_003654324.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299] gi|296095868|gb|ADG91818.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299] Length = 270 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 16/263 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KI KK GQNFL D +L I +S + ++EIG G G+LT+ L + + V E Sbjct: 3 KIKAKKKYGQNFLKDDTVLSMIIQSM-PNNNNHIVEIGPGLGDLTKNL--VKCKDVTAYE 59 Query: 78 KDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D F ILK + L +I D L+ ++ +S +IANLPY I T ++ Sbjct: 60 VDTDLFAILKTKFAIPIDSGSLTLIHADVLESWTKQKSLHNSKYDLIANLPYYIATNIIL 119 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT-KATMMFDISPHV 194 + E + ++ QKEV E+ +A + + L V++ + ++ ++FD+ P Sbjct: 120 RAFEDEAC----EHIIVMVQKEVAEKFSANEGDKEFSALGVISKLCSIESKILFDVPPES 175 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250 F P PKVTS++++ + ++ + F + RK L +++ + + L Sbjct: 176 FDPPPKVTSSILYI--KKDMSKTMDKNFNSFLKACFQQPRKKLSKNVSSIVPKETISSLF 233 Query: 251 HQAGIETNLRAENLSIEDFCRIT 273 + I N+R LS + +I Sbjct: 234 EELEISDNIRPHELSASLYSQIY 256 >gi|222480514|ref|YP_002566751.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239] gi|222453416|gb|ACM57681.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239] Length = 303 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 115/291 (39%), Gaps = 35/291 (12%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTL-- 68 + Q+FL+D +L +I D ++EIG G G LT LL Sbjct: 19 ALARRAGERANPDRDQHFLVDDRVLDRIPGYLPDDADTSHLLEIGGGAGALTDRLLAAIT 78 Query: 69 ---------GARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISS 117 + VIE+D F L++ + L++I+ DAL VD F Sbjct: 79 SSADTDTAPAPGHLSVIERDGTFADFLREEFATAIDDGLLDVIEGDALDVDLPDF----- 133 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +ANLPY + + + F + P + L L+FQ E ER+ A YGRLSV Sbjct: 134 -TACVANLPYGVSSEIAFRLL------PEGKPLVLMFQAEFAERMVASAGESEYGRLSVS 186 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKT 236 ++ + F P P V S V+ +P E+ + + F +RRKT Sbjct: 187 AQHYAAVEIVERVPKEAFDPQPAVESAVVRCLPRDPDYEVGDEAFFLRFVKALFTQRRKT 246 Query: 237 LRQSLKRLG-------GENLLHQAGIE-TNLRAENLSIEDFCRITNILTDN 279 +R +++ G E ++ A + R +L F + + ++ Sbjct: 247 VRNAIRNTGHISGLDDPEAVVDAADEDLLRQRPGDLEPSSFAALAELAREH 297 >gi|195953427|ref|YP_002121717.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp. Y04AAS1] gi|254807870|sp|B4U9C8|RSMA_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|195933039|gb|ACG57739.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp. Y04AAS1] Length = 252 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 114/259 (44%), Gaps = 21/259 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + PKK GQNFL NI I E + TVIEIG G G LT+ L +++I++E Sbjct: 2 LKPKKTFGQNFLKSKNIAHSIVELLDVKEDDTVIEIGPGLGALTEFLYQKPKKELILVEL 61 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ F +L+ ++ +DA VD + N ++II NLPYN+ +L N I Sbjct: 62 DKDIFGLLEKKYKNA----TLLNEDASLVDLSSYKN----LKIIGNLPYNMYASILINMI 113 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEVGER+ + L F + F P Sbjct: 114 NQEKH---ISKMVFMLQKEVGERLITDSKDKSW--LWAYANTYFNIHYAFSVPGRFFEPV 168 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 PKVTS V+ F + ++ ++ F RRK L+ L + + L Sbjct: 169 PKVTSCVLVFDKKEDTPSFEKQNYMDFLKKMFSNRRKMLKHKLNNIEDKYALK------- 221 Query: 259 LRAENLSIEDFCRITNILT 277 R E LS+ED I N L+ Sbjct: 222 -RVEELSLEDIKYIYNTLS 239 >gi|294660187|ref|NP_852792.2| dimethyladenosine transferase [Mycoplasma gallisepticum str. R(low)] gi|298286858|sp|Q7NC69|RSMA_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|284811837|gb|AAP56360.2| dimethyladenosine transferase [Mycoplasma gallisepticum str. R(low)] gi|284930252|gb|ADC30191.1| dimethyladenosine transferase [Mycoplasma gallisepticum str. R(high)] Length = 268 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 20/280 (7%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M NK + + + P K GQNFL+D NI+ + E+ ++ V+EIG G G ++ Sbjct: 1 MINK---INKFFKNNEFSPSKQRGQNFLIDQNIINNVVEAVSKINPSKVLEIGPGLGAIS 57 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121 + L+ A IE D++ F L + + I+ DAL++D++ F+ + + Sbjct: 58 EQLIKRFADNYYAIELDKKLFHHLNERLLKD----HILHADALEIDWKSIFDNLGDNPTM 113 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 + NLPYNI ++L+ +I + + ++ QKE+G R+ A+ NS Y S L + Sbjct: 114 VGNLPYNISSKLIKKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYS 168 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 + + +I+ F P PKV ST++ E K+ F RRKT+ +L Sbjct: 169 LSVSKIIEINETAFIPQPKVRSTLLFLEKKDIAFNEGYEKFLKLI---FLSRRKTILNNL 225 Query: 242 KRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277 K L L G + RA+ LS + L+ Sbjct: 226 KNNYDPKLIIQSLVSLGFKKTSRAQELSPTQLFSLYESLS 265 >gi|18313918|ref|NP_560585.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2] gi|27151587|sp|Q8ZTJ4|RSMA_PYRAE RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|18161487|gb|AAL64767.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2] Length = 228 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 31/252 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + Q+FL D ++ + IA G+ VIE+G G G LT L ++ V IE D+ Sbjct: 3 RRRLAQHFLRDPSVAEYIAGL--VPSGLDVIEVGPGAGALTIPLAKR-SKTVYAIEIDKA 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ I+ P + II DAL+V++ + ++N+PY+I + LLF I Sbjct: 60 LAERLRGIA---PPNVVIIVGDALEVEWPRA------DFFVSNVPYSITSPLLFKLIRHR 110 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 L Q+EV ER+ A+ S YGRL+V ++ + P+VF P PKV Sbjct: 111 LP------AVLTIQREVAERLVARPGSEDYGRLTVAVQCFYDVEILRVLPPYVFDPPPKV 164 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S V+ +P P + +K + F RRKTLR+ L A ++ R Sbjct: 165 YSAVVRLMPKA-PCVDNFDEFEKFSAWLFSARRKTLRR----------LKLA--DSTKRV 211 Query: 262 ENLSIEDFCRIT 273 L++E+ + Sbjct: 212 YQLTLEELVELF 223 >gi|237835739|ref|XP_002367167.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49] gi|211964831|gb|EEB00027.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49] gi|221506158|gb|EEE31793.1| dimethyladenosine transferase, putative [Toxoplasma gondii VEG] Length = 494 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 11/236 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQ+ L + +L KI +++ TV+EIG G GNLT LL + AR+V+ ++ Sbjct: 167 GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALD 225 Query: 78 KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +K + + L + DAL+ D F ANLPY I + L Sbjct: 226 VDARMVNEVKKRAISNGFMNLAVRHGDALRSDLGVF------DVCAANLPYQISSHFLLR 279 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + L+FQKE GER+ AQ +Y RL+ + + F Sbjct: 280 LLAHR---PPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFT 336 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S V+ +P N I + + + FG++ +TL +R ++L Sbjct: 337 PPPKVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEA 392 >gi|228898795|ref|ZP_04063078.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222] gi|228905838|ref|ZP_04069736.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200] gi|228937344|ref|ZP_04099991.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950590|ref|ZP_04112725.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956483|ref|ZP_04118280.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963140|ref|ZP_04124310.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228970230|ref|ZP_04130890.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976800|ref|ZP_04137213.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407] gi|229039946|ref|ZP_04189711.1| Dimethyladenosine transferase [Bacillus cereus AH676] gi|229067806|ref|ZP_04201124.1| Dimethyladenosine transferase [Bacillus cereus F65185] gi|229107728|ref|ZP_04237365.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15] gi|229125559|ref|ZP_04254592.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4] gi|229148451|ref|ZP_04276708.1| Dimethyladenosine transferase [Bacillus cereus m1550] gi|229176642|ref|ZP_04304047.1| Dimethyladenosine transferase [Bacillus cereus 172560W] gi|229188327|ref|ZP_04315376.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876] gi|228595126|gb|EEK52896.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876] gi|228606809|gb|EEK64225.1| Dimethyladenosine transferase [Bacillus cereus 172560W] gi|228634993|gb|EEK91565.1| Dimethyladenosine transferase [Bacillus cereus m1550] gi|228657876|gb|EEL13681.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4] gi|228675701|gb|EEL30908.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15] gi|228715290|gb|EEL67148.1| Dimethyladenosine transferase [Bacillus cereus F65185] gi|228727405|gb|EEL78597.1| Dimethyladenosine transferase [Bacillus cereus AH676] gi|228782896|gb|EEM31061.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407] gi|228789465|gb|EEM37384.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796525|gb|EEM43963.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228803173|gb|EEM49994.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228809065|gb|EEM55549.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228822302|gb|EEM68283.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853778|gb|EEM98537.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200] gi|228860820|gb|EEN05197.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222] Length = 220 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + FN + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|242788270|ref|XP_002481185.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500] gi|218721332|gb|EED20751.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500] Length = 421 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 27/254 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDG------------------ITVIEIGAGPGN 60 +GQ+ L + I I + + + + ++G G G Sbjct: 33 FKFNTDIGQHILKNPGIADAIVDKANIKEHEVVADMLSISCKTRIAQADNIAQVGPGTGV 92 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSP 118 LT+ +L A+ IE D + L + P +L+II D +KVD ++ + Sbjct: 93 LTRRILA-KAKSCTAIELDPRMAAELTKMVQGTPMQRKLKIILGDFIKVDLKEIGHFD-- 149 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I+N PY I + L+F ++ P L+ Q+E +R+ A+ Y RLSV Sbjct: 150 -VFISNTPYQISSPLVFKLLAMPRPP---RVSILMVQREFAQRLIARPGDAMYSRLSVNA 205 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 + + + + + F P P+V S+V+ P + E L + + F ++ KTLR Sbjct: 206 QFHAICSHILKVGKNNFSPPPQVESSVVRIEPRPDRPDISWEELDGMLRICFNRKNKTLR 265 Query: 239 QSLKRLGGENLLHQ 252 S L+ + Sbjct: 266 SSFFVKQVRELIER 279 >gi|302830902|ref|XP_002947017.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f. nagariensis] gi|300268061|gb|EFJ52243.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f. nagariensis] Length = 463 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 133/338 (39%), Gaps = 73/338 (21%) Query: 7 SHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 ++ T+ + Y +I KK +GQNFL D +L+ I ++G V+E+G G GNLT+ Sbjct: 90 PSAISTVANLYEDRIKAKKSLGQNFLTDDAVLQDIVAAAGVGPQDLVLEVGPGTGNLTKH 149 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------------ 112 LL GA V +EKD + L+ P RL +I DALKV E Sbjct: 150 LLASGAG-VTAVEKDDTLYGRLQKEYGDVP-RLTLIHGDALKVGLEDIIRGMMLQQDRQD 207 Query: 113 ----------------------------------FNISSPIRIIANLPYNIGTRLLFNWI 138 ++++ANLPYNI LL + Sbjct: 208 PAASSESVSSAESALASTSTSGASSRGYKPGSSAAAGGRKVKVVANLPYNITKDLLTLLL 267 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKA------------T 185 W L ++ Q E R+T P + ++ T + + Sbjct: 268 PLGDW---ISDLHIMIQHEAAVRLTEHTPGGPEWRAANIRTLFYCRPRHGGGWAGRGRSR 324 Query: 186 MMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 F IS + P P V ++ F P P + + +AF +RRK +R SL+ Sbjct: 325 YRFRISRLKYDPVPGVDGALVTFSLIPPSARPAVPSERAFHSLVVKAFSERRKKMRNSLQ 384 Query: 243 RLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 L G E L + G+ + RA++LS+E F + L Sbjct: 385 PLYGAEQVEAALSECGLNADSRAQDLSLEQFVAFSRQL 422 >gi|221485301|gb|EEE23582.1| dimethyladenosine transferase, putative [Toxoplasma gondii GT1] Length = 494 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 11/236 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQ+ L + +L KI +++ TV+EIG G GNLT LL + AR+V+ ++ Sbjct: 167 GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALD 225 Query: 78 KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +K + + L + DAL+ D F ANLPY I + L Sbjct: 226 VDARMVNEVKKRAISNGFMNLAVRHGDALRSDLGVF------DVCAANLPYQISSHFLLR 279 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + L+FQKE GER+ AQ +Y RL+ + + F Sbjct: 280 LLAHR---PPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFT 336 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S V+ +P N I + + + FG++ +TL +R ++L Sbjct: 337 PPPKVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEA 392 >gi|229142847|ref|ZP_04271290.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24] gi|228640610|gb|EEK96997.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24] Length = 220 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + FN + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYAN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|229027888|ref|ZP_04184043.1| Dimethyladenosine transferase [Bacillus cereus AH1271] gi|228733402|gb|EEL84229.1| Dimethyladenosine transferase [Bacillus cereus AH1271] Length = 220 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|228918992|ref|ZP_04082372.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840641|gb|EEM85902.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 220 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + FN + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|228912781|ref|ZP_04076429.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925295|ref|ZP_04088392.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931544|ref|ZP_04094451.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943848|ref|ZP_04106234.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983297|ref|ZP_04143511.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089173|ref|ZP_04220455.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42] gi|229119704|ref|ZP_04248966.1| Dimethyladenosine transferase [Bacillus cereus 95/8201] gi|229136888|ref|ZP_04265516.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26] gi|229153820|ref|ZP_04281951.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342] gi|229194432|ref|ZP_04321236.1| Dimethyladenosine transferase [Bacillus cereus m1293] gi|228589022|gb|EEK47036.1| Dimethyladenosine transferase [Bacillus cereus m1293] gi|228629624|gb|EEK86320.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342] gi|228646553|gb|EEL02759.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26] gi|228663729|gb|EEL19307.1| Dimethyladenosine transferase [Bacillus cereus 95/8201] gi|228694136|gb|EEL47817.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42] gi|228776411|gb|EEM24763.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815805|gb|EEM62040.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828096|gb|EEM73823.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834342|gb|EEM79882.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846841|gb|EEM91845.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 220 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|229021649|ref|ZP_04178236.1| Dimethyladenosine transferase [Bacillus cereus AH1272] gi|228739652|gb|EEL90061.1| Dimethyladenosine transferase [Bacillus cereus AH1272] Length = 220 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|229159215|ref|ZP_04287240.1| Dimethyladenosine transferase [Bacillus cereus R309803] gi|228624230|gb|EEK81031.1| Dimethyladenosine transferase [Bacillus cereus R309803] Length = 220 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVADETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLNQILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|12045322|ref|NP_073133.1| dimethyladenosine transferase [Mycoplasma genitalium G37] gi|1346403|sp|P47701|RSMA_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|3845058|gb|AAC72483.1| dimethyladenosine transferase [Mycoplasma genitalium G37] gi|166078652|gb|ABY79270.1| dimethyladenosine transferase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 259 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 125/264 (47%), Gaps = 18/264 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P + +GQNF ++L+++K+I +L+ ++EIG G G LT LL L IE Sbjct: 4 FFPSRKLGQNFTVNLSVIKRIFAFVKNLNPQAIVEIGVGKGALTNYLLKLKI-PYKGIEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L + + ++++ D LK DF FF SP+ + N+PY+I + ++ ++ Sbjct: 63 DKRLIEYL--LVEKILTEDQLVKGDILKKDFNSFFENLSPL-LCGNIPYSITSPIINKFL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + S L+ QKE R+ A+ NS Y + T +F I H F P Sbjct: 120 ESK-----LRSFVLMTQKEFANRLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPK 174 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAG 254 PKV ST+I N ++ F +RRK L +LK + L + Sbjct: 175 PKVDSTLILLE--KNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQN 232 Query: 255 IETNLRAENLSIEDFCRITNILTD 278 ++T++RA+ LS C++ N+ + Sbjct: 233 LKTSIRAQELSP---CQLFNLYQN 253 >gi|296128713|ref|YP_003635963.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109] gi|296020528|gb|ADG73764.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109] Length = 319 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 74/303 (24%), Positives = 121/303 (39%), Gaps = 40/303 (13%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF+LD ++KI + + G V+E+G G G+LT LL Sbjct: 9 PAEIRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVVAGERVVEVGPGLGSLTLGLL 68 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPN---------------------------RLEI 99 V+ +E D +L + H RL + Sbjct: 69 EADVD-VVAVEIDPVLAALLPQTVAAHVPGLAVDPHAGTENTDARTVVLRDTAGRARLTV 127 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 + DAL V P ++ANLPYN+ +L ++ E ++ Q EV Sbjct: 128 VTQDALTVT---ALPGPPPTALVANLPYNVSVPVLLTFLER---FDTLERGLVMVQAEVA 181 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC 218 +R+ A S YG S W A + VF+P+P V S ++ +P Sbjct: 182 DRLAAPPGSRTYGVPSAKVAWYASARRTATVGRAVFWPAPHVDSALVRLDRRAHPAAGVP 241 Query: 219 LESLKKITQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 + + + AF +RRK LR + E+ + AG++ +R E + + F RI Sbjct: 242 RQEVFAVVDAAFAQRRKMLRSALAGLAGSSAAAEDAVRAAGLDPQVRGEQVDVVGFARIA 301 Query: 274 NIL 276 L Sbjct: 302 EAL 304 >gi|213420100|ref|ZP_03353166.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 168 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 5/168 (2%) Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 P+R+ NLPYNI T L+F+ S + + + QKEV R+ A NS YGRLSV Sbjct: 1 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 57 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234 + + + + ++ P F P PKV S V+ +PH P P + L +IT EAF +RR Sbjct: 58 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 117 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 KT+R SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 118 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 165 >gi|32266673|ref|NP_860705.1| dimethyladenosine transferase [Helicobacter hepaticus ATCC 51449] gi|62900572|sp|Q7VGZ3|RSMA_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|32262724|gb|AAP77771.1| dimethyladenosine transferase (rRNA methylation) [Helicobacter hepaticus ATCC 51449] Length = 283 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 122/269 (45%), Gaps = 16/269 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQNFL D + L KI +S + IEIG G G+LTQ LL + +I E D Sbjct: 7 KKRFGQNFLQDSHFLHKIIQSIPDIPIQC-IEIGVGLGDLTQELLKIE--SLIAYEVDLD 63 Query: 82 FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 +L S RL II D L + ++ + + ++++NLPY I T ++ + Sbjct: 64 LCSLLNKKFSNQIQSGRLNIIYKDILNLPSQQAWLHTHEYKVVSNLPYYIATHIILRLLR 123 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 F + ++ QKEV ++ A + LSVL KA M+F++ F P P Sbjct: 124 DR----FCRAFLVMTQKEVAQKFCATTGQKEFCALSVLVESFGKAKMLFEVPKEAFSPMP 179 Query: 200 KVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--- 253 KVTS+V + L+ + AF RKTL ++L ++ + LL + Sbjct: 180 KVTSSVFVIHKYSQQNQIEDSFLCDLESFLKIAFYAPRKTLFKNLSQVFDKKLLEEVFEN 239 Query: 254 -GIETNLRAENLSIEDFCRITNILTDNQD 281 I++N RA + + F I L D Sbjct: 240 ENIKSNARAHEVKTKSFHHILQFLKKRND 268 >gi|229182436|ref|ZP_04309688.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1] gi|228601016|gb|EEK58584.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1] Length = 220 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|325968329|ref|YP_004244521.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28] gi|323707532|gb|ADY01019.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28] Length = 276 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 131/272 (48%), Gaps = 19/272 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L ++ Y++ +K + Q+F++D +++ I V+EIG G G LT L + Sbjct: 12 DLMNLIMKYRLRLRKRLSQHFVVDPMVIRDIISHVPL--NSNVLEIGTGIGILTYYLAKV 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 + +VI +E D + I + + +Q N + IIQ +AL++ + + I++N+PY+ Sbjct: 70 TS-QVITVEIDGRLVRIAERVLNQL-NNISIIQGNALEIPWPQV------DIIVSNVPYS 121 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L+ I L Q+EV R+ ++ YGRLS++T +++ Sbjct: 122 ITSPLIIRIIREG-----IPRALLTIQREVANRLISKPGGDDYGRLSIITQCNYFVSILN 176 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 P F+PSP++ S+++ P +++L+ +T F R + LR L + G Sbjct: 177 TYPPDSFYPSPEIYSSLVMMT-KKEPCYGDMKALESVTNVLFRHRNRVLRWVLNKYLGSD 235 Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITNILT 277 N L +A I N R L I++ +IT L Sbjct: 236 AVNALMKANINVNARVRQLGIDELVKITEYLK 267 >gi|229074103|ref|ZP_04207150.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18] gi|229094763|ref|ZP_04225769.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29] gi|229100830|ref|ZP_04231645.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28] gi|228682597|gb|EEL36659.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28] gi|228688631|gb|EEL42503.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29] gi|228708997|gb|EEL61123.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18] Length = 220 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|195589589|ref|XP_002084534.1| GD14323 [Drosophila simulans] gi|194196543|gb|EDX10119.1| GD14323 [Drosophila simulans] Length = 381 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 50/292 (17%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ ++ Y++ +K + QNFL+D + KI Sbjct: 101 PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI-------------------------- 134 Query: 66 LTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRI 121 +++++EKD +F +LK+ +S + +I DD L+ + E+ + S I + Sbjct: 135 ------RLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHL 188 Query: 122 IANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176 I NLP+ I TRLL NW+ + +TL FQ+EV ERI A RLSV Sbjct: 189 IGNLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSV 248 Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRK 235 ++ T+ M F I F P P+V V+ IP P ++++ + F R+K Sbjct: 249 MSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRHIFSMRQK 308 Query: 236 TLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R+ L L +A ++ LR L++E R+ + +++ Sbjct: 309 YCRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 360 >gi|50955322|ref|YP_062610.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|62900513|sp|Q6ADP1|RSMA_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|50951804|gb|AAT89505.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 280 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 131/278 (47%), Gaps = 19/278 (6%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ + + P K +GQNF++D N +++I +G G V+E+G G G+LT LL Sbjct: 9 PAEIRDLAELIGVAPTKRLGQNFVIDANTVRRIVRVAGVEAGEVVVEVGPGLGSLTLGLL 68 Query: 67 TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 GAR V+ +E D + L ++ + RL ++ DAL V P R++ Sbjct: 69 EAGAR-VVAVEIDGRLAERLPLTVAQLAPEAAGRLTVVHSDALAVTE----LPERPGRLV 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 ANLPYN+ +L + + P S ++ Q EVG+RI A S YG SV W Sbjct: 124 ANLPYNVSVPVLLHLLER---VPSLRSGVVMVQAEVGQRIAAGPGSKVYGAPSVKAAWYG 180 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQS 240 +S +F+P P V S ++ F H + + AF +RRKTLRQS Sbjct: 181 VWRTAGTVSRQIFWPVPNVDSILVGFERHATEPGDDELRKRTFALVDAAFQQRRKTLRQS 240 Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273 L + G+ L AG+ R E L++ DF R+ Sbjct: 241 LAPVYGDPAAAGAALEAAGVAPRRRGEQLTLADFVRLA 278 >gi|123966249|ref|YP_001011330.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9515] gi|166221690|sp|A2BWR2|RSMA_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123200615|gb|ABM72223.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 276 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 12/266 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 KK GQ++L++ IL+KI E + + ++EIG G G LT LL ++ +E Sbjct: 5 NHHQKKRFGQHWLVNNLILEKIKEVAELDEKDFILEIGPGKGALTSKLLDSKISRLHAVE 64 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ +L + ++ + + Q D L + + ++IAN+PYNI +L + Sbjct: 65 LDKDLIDLLNNKF-RNDKKFSLQQGDILSTNLDSI--NKKITKVIANIPYNITGPILDIF 121 Query: 138 ISA--DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 I ++ + L QK+V +RI ++++S + G +SV + + D+ P F Sbjct: 122 IGRLGIVSKNNYKKIIFLMQKDVVDRILSKESSKNAGAMSVRMQLISNIKRICDVPPSSF 181 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+++ F P ++ + K+ Q +F RRK +R +L + E+ + + Sbjct: 182 NPPPKVFSSLVVFEPLRPEKRLDIKLERYIDKLLQISFNSRRKMIRNTLNSILSEDEIKK 241 Query: 253 A----GIETNLRAENLSIEDFCRITN 274 I N R +++SI + ++ Sbjct: 242 LAELSEICFNSRPQDISINKWIKLAE 267 >gi|116004017|ref|NP_001070364.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos taurus] gi|83638584|gb|AAI09842.1| Transcription factor B1, mitochondrial [Bos taurus] gi|296483883|gb|DAA25998.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos taurus] Length = 226 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 14/208 (6%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +++ I+ +++ K + QNFLLDL + KI +G+L V E+G GPG +T+ + Sbjct: 14 PLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116 L G +++V+EKD +F P L+ +S P +L I+ D L E+ F + Sbjct: 74 LNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDP 133 Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 + II NLP+++ T L+ W+ + + L FQKEV ER+TA S Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQR 193 Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSP 199 RLS++ + + I F P P Sbjct: 194 SRLSIMAQYLCDVQHILTIPGQAFVPKP 221 >gi|257051708|ref|YP_003129541.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940] gi|256690471|gb|ACV10808.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940] Length = 292 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 118/266 (44%), Gaps = 28/266 (10%) Query: 27 QNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 Q+FL+D +L +I A +G G V+EIGAG G LT LL + A V +E+D Sbjct: 34 QHFLVDDRVLDRIPTYATEAGIDLG-HVLEIGAGNGALTDRLLAV-ADWVTAVERDPDLA 91 Query: 84 PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + RL +I+ DAL+VD + I+NLPY + +LF + Sbjct: 92 AFLRTEFADAIEAGRLTVIEGDALEVDLPDY------TASISNLPYGASSEILFRLL--- 142 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + L + Q E +R+ A S YGRLSV G ++ + P F P P V Sbjct: 143 ---PAGKPLIAMVQAEFADRMAADPGSDDYGRLSVTAGHYADVEVVEPVPPEAFSPPPAV 199 Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG-------GENLLHQA 253 S ++ +P + + F +RRKT+R ++ + ++ A Sbjct: 200 DSALVRALPREPNYTVPDDDFFLGFVKAVFTQRRKTVRNGIRNTAHISGLDDPDAVVDAA 259 Query: 254 GIE-TNLRAENLSIEDFCRITNILTD 278 E RA +LS DF + ++ + Sbjct: 260 DEELLRKRAGDLSPTDFAELASLAHE 285 >gi|302421778|ref|XP_003008719.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102] gi|261351865|gb|EEY14293.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102] Length = 346 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + I +G TV+EIG G GNLT +L A+K+I IE Sbjct: 29 FKFNTNVGQHILKNPGVADAIVAKAGLKPTDTVLEIGPGTGNLTVRILE-NAKKLIAIEF 87 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE++ DA+KVD+ F +I+N PY I + L+F Sbjct: 88 DPRMAAEVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQISSPLVFK 141 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ E G+R+ A+ YGRLSV + + + +S F Sbjct: 142 MLAMPKPP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVMKVSKANFR 198 Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQE 228 P P+V S V+ +P E + + Sbjct: 199 PPPQVDSCVVRIVPKQGSERPNIAFEEFDGLLRI 232 >gi|145591594|ref|YP_001153596.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514] gi|145283362|gb|ABP50944.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514] Length = 228 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 115/252 (45%), Gaps = 31/252 (12%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 + + Q+FL D ++ + I G+ VIE+G G G LT L ++ V IE D+ Sbjct: 3 RRLSQHFLRDRSVAEFIVGL--VPGGLDVIEVGPGTGALTFPLAE-KSKTVYAIELDKSL 59 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L+ ++ P + +I DAL+V++ K ++N+PY+I + LL Sbjct: 60 AEQLR---ARAPPNVVVIWGDALQVEWPKA------DFFVSNMPYSITSPLLLKLARHRL 110 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + Q+EV ER+ A + YGRL+V + ++ + P VF P PKV Sbjct: 111 P------AVVTVQREVAERMAAVPGTEEYGRLTVAIQCMYEVEVVRVLPPRVFSPPPKVY 164 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 S V+ P P E+ ++ T + F RRKTLR+ LK L Q+ R Sbjct: 165 SAVVTLRPKA-PCVDDFEAFERFTAKLFSARRKTLRR-LK-------LAQSD----KRVY 211 Query: 263 NLSIEDFCRITN 274 L++E+ + Sbjct: 212 QLTVEEIVELFQ 223 >gi|298706896|emb|CBJ25860.1| conserved unknown protein [Ectocarpus siliculosus] Length = 310 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 12/215 (5%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNR 96 I + + V+EIG G GNLT LL A++VI +E D + + + Sbjct: 3 IVDRAAVKRTDVVLEIGPGTGNLTVRLLER-AKRVIAVELDTRMVREVMKRVEGTEWEKS 61 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 L+IIQ D LKV FF++ ++AN+PYNI + LLF ++ P + ++FQ+ Sbjct: 62 LQIIQGDVLKVPLP-FFDV-----LVANVPYNISSPLLFKLLAHR---PMFRCAVIMFQE 112 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 E +R+TA+ N+ + RLSV T K +F ++ + F P PKV S V+ P P Sbjct: 113 EFAQRLTARPNTDMWCRLSVNTQLLAKVDQLFKVNRNNFRPPPKVDSRVVRIELRNPPPP 172 Query: 217 CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251 + + F ++ KTLR +L LL Sbjct: 173 VNFTEWDGMIRVIFNRKHKTLRATLTTKATLKLLT 207 >gi|332296038|ref|YP_004437961.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium narugense DSM 14796] gi|332179141|gb|AEE14830.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium narugense DSM 14796] Length = 263 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 19/270 (7%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + P K GQNFL+D NI KKI ES+ ++EIG G G LT+ L+ L IE Sbjct: 3 NLAPLKRYGQNFLVDQNISKKIIESALIEKEDLILEIGPGKGALTKYLVKL-PNDYFGIE 61 Query: 78 KDQQFFPILKDISSQHPNRL-----EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 D+ + +L + L +II D L+ D I + +I+NLPYNI + Sbjct: 62 VDRGLYDLL---CKEFEKDLALCGKKIILADVLETD---LGFIEKKVNVISNLPYNIASL 115 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ I + + +S+TL+ QKE+ +R+ A + YGRLSVL + +++F++ Sbjct: 116 IIVKMIKENI---YLKSMTLMIQKEMSQRLFAMPGAKEYGRLSVLVQNFFEGSIIFEVKE 172 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F+P PKV S VI IP + + + F + RK ++ L + Sbjct: 173 SCFYPKPKVRSVVIRLIPKSDFYEKRLYFIDFENFLKRVFSQPRKIIKNVLTEKYI-RIF 231 Query: 251 HQAGIE-TNLRAENLSIEDFCRITNILTDN 279 + + +LR E + E + RI + + Sbjct: 232 SETNTDLLHLRPEQIDPETYWRIFRLSKER 261 >gi|307596557|ref|YP_003902874.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429] gi|307551758|gb|ADN51823.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429] Length = 276 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 19/272 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 L +++ ++ P K + Q+F++D I++ I G V+E+G G G LT L + Sbjct: 12 DLMSLIMRNRLKPIKRLSQHFVVDPTIIRDIVNHIP--RGSKVLEVGTGIGILTYYLARV 69 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A +VI IE D + I + + S N + IIQ DAL+V + + +++N+PY+ Sbjct: 70 -ASQVITIEIDGRLVRIAEHVLSGL-NNVSIIQGDALRVPWPQV------DALVSNVPYS 121 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + L+ I L Q+EV R+T + S YGRLSV+T +++ Sbjct: 122 ITSPLIMRIIKEGVP-----RALLTIQREVANRLTGEPGSDDYGRLSVITQCNYSVSILN 176 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 +P F+PSP+V S++I P +++L+ +T+ F R + LR L + G + Sbjct: 177 TYAPDSFYPSPEVYSSLIMMS-KKEPCYDDMDALESVTKLLFRHRNRVLRWVLNKYLGPS 235 Query: 249 LLHQ---AGIETNLRAENLSIEDFCRITNILT 277 ++ AGI+ + R L I + +IT L Sbjct: 236 AVNAVVNAGIDVSARVRQLGINELIKITGSLK 267 >gi|126459717|ref|YP_001055995.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548] gi|126249438|gb|ABO08529.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548] Length = 230 Score = 191 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 31/252 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ Q+FL + + I G+ V+E+G G G LT L +R V IE D+ Sbjct: 4 RRRFSQHFLKSREVAEFIVGL--VPPGLDVLEVGPGRGALTIPLAE-KSRVVYAIEIDRG 60 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + P + +I DAL+V++ ++N+PY I + LL Sbjct: 61 LAEELRRAA---PPNVVVIVGDALEVEWP------PAQYFVSNVPYEITSPLLLKLARHR 111 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + QKEV +R+ A+ + YGRL+V ++ + PH F P PKV Sbjct: 112 LP------AVVTVQKEVADRLAAEPGTEEYGRLTVAVRCHYDVEVVRVLPPHAFSPPPKV 165 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S V+ P P E ++ T F RRKTLR+ L A ++ R Sbjct: 166 YSAVVRLTPR-PPCIEDFEGFQRFTAALFSARRKTLRR----------LKLA--DSEKRI 212 Query: 262 ENLSIEDFCRIT 273 LS+E+ + Sbjct: 213 FQLSLEEIVELY 224 >gi|229113716|ref|ZP_04243152.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3] gi|228669713|gb|EEL25119.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3] Length = 220 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 19/222 (8%) Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129 + E DQ+ PIL + + + N + +I D LK D + F + ++ANLPY I Sbjct: 1 MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 T +LF + ++ QKEVG+R+ A+ + YG LS+ + T+ + Sbjct: 60 TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246 + VF P P V S +I + P+ ++ + +F +RRKTL +L Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176 Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + I+ R E LSIE+F ++N L ++ Sbjct: 177 FPKDKELLDRILTEVEIDPKRRGETLSIEEFATLSNALVLHK 218 >gi|269860446|ref|XP_002649944.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348] gi|220066631|gb|EED44106.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348] Length = 275 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 31/274 (11%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK Q+ L++ N++ I + + V+EIGAG GN+T LL A+KVI EK Sbjct: 3 VQLKKSESQHMLVNNNLIDVIIDKAKIKHTDIVLEIGAGTGNITMKLLP-KAKKVIAYEK 61 Query: 79 DQQFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D++ +++ +L +IQDD L+ + F + I+N+P+NI ++ Sbjct: 62 DKKLANEIQNKLYTQKLLKAKLHLIQDDVLENNLPHF------DKCISNIPFNISLPIIL 115 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 +++ +++ +L QKE +R+T++ S Y RLSV+ K + + + F Sbjct: 116 KLMNSH-----FKNAFILVQKEFADRLTSRPGSKDYSRLSVIVQLFAKVECVLKVKKNNF 170 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLH 251 P PKV + I P + L + + F ++ KTL +LK + EN ++ Sbjct: 171 IPQPKVDTCFIKIEPKVPRPSLDLTEFDNLLKICFSRKNKTLMSNLKTPQMKKYIENSIN 230 Query: 252 QAGIE------------TNLRAENLSIEDFCRIT 273 + N R +SIE + + Sbjct: 231 CTNFDNQITSILDKLNYKNERPIKMSIEKYVSLF 264 >gi|1806115|emb|CAA92586.1| dimethylase [Kluyveromyces lactis] Length = 320 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 12/236 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + V+EIG G GNLT +L ARKV+ Sbjct: 29 FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQ-ARKVVRRGV 87 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + P +LEI+ D +K + F I+N PY I + L+F Sbjct: 88 RSSYGSGRTKRVHGTPVEKKLEILLGDFMKTELPYF------DVCISNTPYQISSPLVFK 141 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I+ P L+FQ+E R+ A+ Y RLS T + + + F Sbjct: 142 LINQPKPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 198 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ + + F ++ +T+ K +L + Sbjct: 199 PPPKVESSVVRIEIKNPRPQVDFNEWDGLLRIVFVRKNRTIAAGFKSTTDLEILEK 254 >gi|13508418|ref|NP_110368.1| dimethyladenosine transferase [Mycoplasma pneumoniae M129] gi|2500512|sp|P75113|RSMA_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|1673824|gb|AAB95811.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Mycoplasma pneumoniae M129] gi|301633390|gb|ADK86944.1| dimethyladenosine transferase [Mycoplasma pneumoniae FH] Length = 263 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 15/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 P + +GQNF +D +++ K SL+ +IE+G G G LT+ LL L IE Sbjct: 4 FYPSRKLGQNFTVDQSVIAKTCRLIKSLNPTALIEVGPGKGALTKALLKLQ-LPYHGIEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ L +L I DALK + +++F + P+ + N+PY+I + L+ N++ Sbjct: 63 DKRLAEYLLVNEILTEEQLTI--GDALKQNLDQYFPDTIPL-LCGNIPYSISSPLIANFL 119 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ + L+ Q E G+R+ A NSP+Y V + + +F I F P Sbjct: 120 ASK-----LQQFVLVCQWEFGQRLVAPVNSPNYSAFGVFCQYHLQIKSVFKIDKVAFKPK 174 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAG 254 P+V S ++ P + ++ F +RRK L +LK+L N+L Q Sbjct: 175 PQVDSVLMLL--KKKPQVAYEAHFGRFLKQCFHQRRKLLVNNLKQLLPPTLLTNVLQQQD 232 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 + +RA+ L+ R+ L + Sbjct: 233 LAATVRAQELTPTQLFRLYLSLKPH 257 >gi|227327730|ref|ZP_03831754.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 164 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 NLPYNI T L+F+ T+ + + QKEV R+ A NS +GRLSV+ Sbjct: 1 MFFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQ 57 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237 + + + ++ P F P+PKV S V+ +PH P P + L +IT EAF +RRKTL Sbjct: 58 YYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFNQRRKTL 117 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 R SL L ++L + GI+ + RAEN+++E +CR+ N L+++ Sbjct: 118 RNSLGNLFTPDVLTELGIDVSSRAENVTVEQYCRLANWLSEH 159 >gi|116515030|ref|YP_802659.1| hypothetical protein BCc_089 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256884|gb|ABJ90566.1| dimethyladenosine transferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 275 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 133/269 (49%), Gaps = 13/269 (4%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +++++ +P K +GQNFL + I+ +I +IEIG+G G LT + + Sbjct: 1 MRSLIYK-NHVPIKKLGQNFLQNKEIINQIINLININKNDNIIEIGSGLGALTFPICRI- 58 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPY 127 +K+IV+E D+ L S +L+II D +K DF FF++ R I NLPY Sbjct: 59 IKKMIVLEIDEDLVFFL--TQSLFIKKLQIIIADIIKFDFCCFFSLQKYKKYRFIGNLPY 116 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 NI T I + + +FQKEV +R+ A + YGRLS++ + K + Sbjct: 117 NIATIFFLKTIK---FLYNIIDMHFMFQKEVAKRLLATPGTKEYGRLSIIAQYFYKIETV 173 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 +++ FFP+PKV ST + F P I L+ IT+ +F RRK L +L Sbjct: 174 INVNKFNFFPTPKVDSTFLRFTPKYFNSKYKIDKHFSVLELITRFSFQHRRKFLNNNLIS 233 Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRI 272 L L I+ RAEN+S+ +C++ Sbjct: 234 LFSTKELISLDIDPYSRAENVSLIQYCKL 262 >gi|289642509|ref|ZP_06474653.1| dimethyladenosine transferase [Frankia symbiont of Datisca glomerata] gi|289507683|gb|EFD28638.1| dimethyladenosine transferase [Frankia symbiont of Datisca glomerata] Length = 319 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 16/278 (5%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 +++I + I P K GQNFL+D N ++++ +G TV+EIG + L Sbjct: 30 PADVRSISAAVGIRPTKRRGQNFLVDPNTVRRLVRLAGVEPDETVLEIGP-GLGSLTLGL 88 Query: 67 TLGARKVIVIEKDQQFFPIL-----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 AR+V+ +E D+ L + RL ++ D L+++ + P + Sbjct: 89 LPAARRVVAVELDEALATALPATVTARLGPAVAARLTVLAADGLRLEPADI-SGDPPSVL 147 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 ANLPYN+ LL + P ++ Q EV +R+TA YG SV W Sbjct: 148 AANLPYNVAVPLLLGVLER---FPSVRRGLVMVQAEVADRLTASPGGRVYGVPSVKMAWY 204 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS 240 A + VF+P P V S+++ F H P ++ AF +RRKTLR + Sbjct: 205 ASARPAGPVPRAVFWPQPNVDSSLVAFSRHDRQGSPRLRRAVFAAVDAAFAQRRKTLRAA 264 Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 L G E L AGI+ + R E L + F R+ Sbjct: 265 LSGWAGSADQAERLALAAGIDPSARGEILDVAAFTRLA 302 >gi|123968460|ref|YP_001009318.1| dimethyladenosine transferase [Prochlorococcus marinus str. AS9601] gi|166221691|sp|A2BR00|RSMA_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|123198570|gb|ABM70211.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. AS9601] Length = 274 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ KK GQ++L++ IL+KI E + ++EIG G G LT LL +K+ Sbjct: 1 MNSKNHHQKKRFGQHWLVNKKILEKIKEIAVLNQNDFILEIGPGKGALTSKLLDSEIKKL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 IE D+ +L D + + ++ + Q D L V+ + ++IAN+PYNI + Sbjct: 61 HAIELDKDLINLLNDKFNNN-DKFSLQQGDILTVNLDSI--NKKITKVIANIPYNITGPI 117 Query: 134 LFNWISA--DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 L +I T +E + L QK+V +RI +++ SP+ G LSV +K + D+ Sbjct: 118 LDIFIGRLGITRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSVRMQLLSKIKKICDVP 177 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 P F P PKV S+++ F P N + + +++ K+ + +F RRK LR +L + Sbjct: 178 PSSFSPPPKVFSSLVVFEPIKNHLRLDISIEKNIDKLLRISFNSRRKMLRNTLNSILSNE 237 Query: 249 LLHQAG----IETNLRAENLSIEDFCRITN 274 +++ + NLR +++SIE + ++ Sbjct: 238 EINELSESSKVCFNLRPQDISIEQWIKLAE 267 >gi|257461216|ref|ZP_05626314.1| dimethyladenosine transferase [Campylobacter gracilis RM3268] gi|257441590|gb|EEV16735.1| dimethyladenosine transferase [Campylobacter gracilis RM3268] Length = 287 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 123/285 (43%), Gaps = 33/285 (11%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D +L KI ++ V+EIGAG G+LT+ LL ++ E Sbjct: 2 IRAKKEFGQNFLKDEAVLSKIIQAI-PGSVQNVVEIGAGLGDLTRKLLEF--YRLKSFEI 58 Query: 79 DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ + IL +Q LE++ DAL++ E+ ++ANLPY + T+++ Sbjct: 59 DEDLYQILSAKFAQQIASGELELVLGDALRIWQERRGLERGEYFLVANLPYYVATKMILQ 118 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + F ++ QKEV + A+ + LS+L ++FD+ P F Sbjct: 119 AIDDELCGGFL----VMIQKEVALKFCARAGQSDFSALSILADLAGGCELLFDVEPDCFE 174 Query: 197 PSPKVTSTVIHFIPHLNPIP--------------------CCLESLKKITQEAFGKRRKT 236 P+PKVTS+VI I N P E K + +F RKT Sbjct: 175 PAPKVTSSVIRLIKGKNFKPGIEINADGLGVKSCARFQNLDEYEKFKSFLRVSFSAPRKT 234 Query: 237 LRQSLKRLGGENLLHQ----AGIETNLRAENLSIEDFCRITNILT 277 L ++L L+ + I +RA L+ F I L Sbjct: 235 LIKNLSAKFDRGLVEEISLNLQIPPTVRAHELNSTFFLEIFKNLR 279 >gi|312085450|ref|XP_003144684.1| hypothetical protein LOAG_09107 [Loa loa] gi|307760150|gb|EFO19384.1| hypothetical protein LOAG_09107 [Loa loa] Length = 276 Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 110/260 (42%), Gaps = 40/260 (15%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEII 100 S TV E+G+G GNLT +L+ A+KVI E D++ LK + H +LE+ Sbjct: 15 SAIKATDTVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAELKKRVIGTSHQQKLEMK 73 Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160 Q D +K+++ FF++ IANLPY I + +F + P + L+FQKE + Sbjct: 74 QGDVIKMEWP-FFDVC-----IANLPYQISSPFVFRMLLQRPLPRY---AVLMFQKEFAD 124 Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220 R+ A+ S Y RLSV + + + + F P PKV S V+ P P + Sbjct: 125 RLLAKPGSKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDSAVVRIAPRNPPPQINFQ 184 Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----------------GIE-------- 256 + + F ++ KTL K + L ++ I Sbjct: 185 EWDNLLRIVFLRKNKTLLSLFKNNQVCDSLEKSYRALYSIKNKEVESQFNIRDKVEHIIT 244 Query: 257 ----TNLRAENLSIEDFCRI 272 + RA + EDF + Sbjct: 245 GSGFASKRARQMDTEDFLSL 264 >gi|315926638|gb|EFV06018.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 254 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 14/245 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQNFL+D ++L KI ++ + +IEIG G G+LTQ LL + +V E Sbjct: 2 VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D PILK + + +I DA + P ++ANLPY + + ++ Sbjct: 59 DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L ++ Q+E+ E+ A++ + + L VL+ + ++FD+ P F Sbjct: 117 ALEDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172 Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253 P PKV S V+ I + C +E+ K ++ F RK L +LK + +L Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232 Query: 254 GIETN 258 G++ Sbjct: 233 GLKET 237 >gi|119871918|ref|YP_929925.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184] gi|226732612|sp|A1RRK0|RSMA_PYRIL RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|119673326|gb|ABL87582.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184] Length = 235 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 113/257 (43%), Gaps = 31/257 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ Q+FL D ++ + I E G+ +IE+G G G LT L ++ + IE D Sbjct: 3 KRRWSQHFLRDTSVAQFITEL--VPSGLDIIEVGPGRGALTLPLAE-KSKTIYAIEIDPT 59 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK Q P + +I DAL++++ + ++N+PY+I + LL Sbjct: 60 LAEFLKR---QAPPNVVVIVGDALEIEWPRA------DFFVSNIPYSITSPLLLKLAKYR 110 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + QKEV ER+ A + +YGRL+V ++ + PHVF P PKV Sbjct: 111 LP------AVVTIQKEVAERLVAAPGTENYGRLTVAIRCHYDVEVLRILPPHVFSPPPKV 164 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S V+ P P E+ ++ T F RRKTLR+ LK E R Sbjct: 165 YSAVVRLTPRR-PCVEDFENFQRFTARLFSTRRKTLRR-LKLGETE-----------KRV 211 Query: 262 ENLSIEDFCRITNILTD 278 L++E+ + D Sbjct: 212 YQLTLEEIVELYKKHFD 228 >gi|300932590|ref|ZP_07147846.1| dimethyladenosine transferase [Corynebacterium resistens DSM 45100] Length = 256 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 107/244 (43%), Gaps = 30/244 (12%) Query: 56 AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEK 111 G G+LT LL V +E D + L + + + +L +I+ DALKV Sbjct: 5 PGWGSLTLALLE-AVETVTAVEIDSRLAQKLPETVAHYAAGAGEKLGVIEMDALKVTRAD 63 Query: 112 FFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 F S P+ ++ANLPYN+ +L + + P + + ++ Q EV +R+ AQ S Sbjct: 64 FEAASRPLPTALVANLPYNVSVPVLLHLLEE---FPTIDRVLVMVQLEVADRLAAQPGSK 120 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESL---- 222 YG SV + + I +VF+P+PK+ S ++ + P L Sbjct: 121 IYGVPSVKASYYGNVSRAATIGKNVFWPAPKIDSGLVRIDRYRAAERPWAEGAPELHTSA 180 Query: 223 --------KKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDF 269 + AF +RRKTLR +L G E L AGI+ R E LS+ DF Sbjct: 181 EQSLRKETFALADAAFLQRRKTLRAALSGHFGGAPQAEAALLAAGIDPKQRGEKLSVVDF 240 Query: 270 CRIT 273 R+ Sbjct: 241 VRLA 244 >gi|118475585|ref|YP_892919.1| dimethyladenosine transferase [Campylobacter fetus subsp. fetus 82-40] gi|171473008|sp|A0RRT6|RSMA_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118414811|gb|ABK83231.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Campylobacter fetus subsp. fetus 82-40] Length = 268 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 16/262 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D NI +I ++ D ++EIG G G+LTQ L+ L + + E Sbjct: 2 IKVKKKFGQNFLQDENIKNQIIQAI-PNDVKRIVEIGPGLGDLTQKLVKLDS-MIDCFEI 59 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + IL D +L II DAL + +S ++ANLPY + T ++ Sbjct: 60 DSELYTILLDKFRSELDSGKLNIINSDALNAWDK---LSASEYFLVANLPYYVATNMILK 116 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 I + L ++ Q+EV + +++ + L++LT + K ++FD+ F Sbjct: 117 AIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWLKGKCELLFDVPSSAFN 172 Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251 P PKV S+VI I + + ++ K + AF RKTL ++L L + L Sbjct: 173 PPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLKNLSNLVQRDRLEIFFN 232 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 + +R LS+ + ++ Sbjct: 233 TENLSHTIRPHELSVALYLKLF 254 >gi|327311782|ref|YP_004338679.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20] gi|326948261|gb|AEA13367.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20] Length = 228 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 30/253 (11%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 ++ +GQ+ L D ++ + +A +G V+E+GAG G LT L A KV IE D+ Sbjct: 1 MRRRLGQHMLRDRSVAEYMAGL--VPEGSVVLEVGAGTGTLTLELAKR-ASKVYAIELDR 57 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L S++ P +E+I DAL++++ +N+PY I + LL Sbjct: 58 ALAAYL---SARAPPNVEVIVGDALRLEWP------PADFFASNIPYYISSPLLLRLAER 108 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ Q+EV ERI+A+ S +YGRL+V ++ + P F P P+ Sbjct: 109 RMP------AVVMLQREVAERISAEPGSENYGRLTVAVRCNYDVEVLRTVPPRAFSPPPQ 162 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S V+ P P +S +K T F +RRK L + L R G R Sbjct: 163 VYSAVVRLTPR-PPCVDDFKSFEKFTAMLFSQRRK-LARKLCR----------GAPEGKR 210 Query: 261 AENLSIEDFCRIT 273 LS+++ + Sbjct: 211 VYQLSLDEVVELF 223 >gi|157736324|ref|YP_001489007.1| dimethyladenosine transferase [Arcobacter butzleri RM4018] gi|315635457|ref|ZP_07890723.1| dimethyladenosine transferase [Arcobacter butzleri JV22] gi|166987689|sp|A8EQW4|RSMA_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157698178|gb|ABV66338.1| dimethyladenosine transferase [Arcobacter butzleri RM4018] gi|315480215|gb|EFU70882.1| dimethyladenosine transferase [Arcobacter butzleri JV22] Length = 265 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 16/255 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 K+ KK GQNFL D IL KI +S + ++EIG G G+LT+ L+ + + E Sbjct: 3 KVKAKKQYGQNFLKDSTILDKIIQSM-PNNNNHIVEIGPGLGDLTKNLVKY--KDLTAYE 59 Query: 78 KDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D ILK + L++I D L+ + +IANLPY I T ++ Sbjct: 60 VDTDLIGILKSKFAIEIEKGNLKLIHTDVLEAWDKLKNLHDGKYDLIANLPYYIATNIIL 119 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT-KATMMFDISPHV 194 + E + ++ QKEV E+ TA+ N Y L ++T + + ++FD+ Sbjct: 120 RAFEDE----LCEHIIVMVQKEVAEKFTAKTNDKEYSSLGIITELISINSKILFDVPAEA 175 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---- 250 F P PKVTS++++ + + K + F + RK L ++L + +N++ Sbjct: 176 FDPPPKVTSSILYI--KKDMSKSLDKDFNKFLKACFIQPRKKLSKNLTTIFDKNIIFEIY 233 Query: 251 HQAGIETNLRAENLS 265 + I N+R +S Sbjct: 234 KELNINDNVRPHEVS 248 >gi|239610737|gb|EEQ87724.1| dimethyladenosine transferase [Ajellomyces dermatitidis ER-3] Length = 330 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 20/225 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107 TV+EIG G GNLT +L A+KVI +E D + + P RLE++ D +K Sbjct: 10 TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D F I+N PY I + L F ++ D P L+FQ+E R+ A+ Sbjct: 69 DLPYF------DVCISNTPYQISSPLTFKLLAIDPAP---RVCILMFQREFAMRLFAKPG 119 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 Y RLSV + + + + F P P V S+V+ +P + + + Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLR 179 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268 AF ++ KT+R S LG ++L +E+N R N+ +ED Sbjct: 180 VAFVRKNKTMRSSF--LGTTSVLD--MLESNYRTWCAQNNIPVED 220 >gi|84490322|ref|YP_448554.1| dimethyladenosine transferase [Methanosphaera stadtmanae DSM 3091] gi|119365032|sp|Q2NE42|RSMA_METST RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|84373641|gb|ABC57911.1| KsgA [Methanosphaera stadtmanae DSM 3091] Length = 271 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 20/259 (7%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + K IL Y I QN+L+D N L I E++ D T++EIGAG G LT + Sbjct: 2 SNTKEILEKYNIKLDTNKSQNYLIDDNKLNIILENADIQDNETILEIGAGIGTLTLPMAK 61 Query: 68 LGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 A+KVI IEKD ILK I + +EII+DDALKVDF KF ++++NLP Sbjct: 62 -KAKKVIAIEKDPIIVDILKQQIIKEKLTNIEIIKDDALKVDFPKF------DKVVSNLP 114 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y I + + F + ++ L++Q E +R+ A+ ++ Y RLSV +R + Sbjct: 115 YQISSPVTFKLLEYP-----FKKAILMYQLEFAKRMQAKPDTHEYSRLSVALSYRADTKI 169 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + + P F P PK+ S VI IP N + L + F R K +++L + Sbjct: 170 IDTLPPEAFIPKPKIKSAVIELIPKNNKP--IDKLLDNTIRALFQHRNKKAKKALIQSA- 226 Query: 247 ENLLHQAGIETNLRAENLS 265 H+ G++ + + LS Sbjct: 227 ----HELGVDKKVLKQKLS 241 >gi|328785046|ref|XP_624425.2| PREDICTED: probable dimethyladenosine transferase-like [Apis mellifera] Length = 280 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 112/291 (38%), Gaps = 66/291 (22%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 I+ +GQ+ L + +++ + E + V+EIG Sbjct: 18 KQGILFNTDIGQHILKNPLVIQSMVEKAAVRPTDVVLEIGP------------------- 58 Query: 76 IEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 L+ + ++L+I+ D LK D FF++ +AN+PY I + L Sbjct: 59 --------AELQKRVQGTAYQSKLQIMIGDVLKTDLP-FFDLC-----VANIPYQISSPL 104 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +F + P + L+FQ+E ER+ A+ Y RLS+ T + ++ + + Sbjct: 105 VFKLL---LHRPMFRCAILMFQREFAERLVAKPGDKLYCRLSINTQLLARVDLLMKVGKN 161 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S V+ P P P + +T+ AF ++ KTL + K+ +L + Sbjct: 162 NFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQTTVLTMLEKN 221 Query: 254 ----------------GIE------------TNLRAENLSIEDFCRITNIL 276 I+ N RA + I+DF + + Sbjct: 222 YKLHCSLNNKIITEGFNIKDMISDILQKADAENKRARTMDIDDFISLLHAF 272 >gi|261194984|ref|XP_002623896.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081] gi|239587768|gb|EEQ70411.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081] Length = 330 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 20/225 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107 TV+EIG G GNLT +L A+KVI +E D + + P RLE++ D +K Sbjct: 10 TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D F I+N PY I + L F ++ + P L+FQ+E R+ A+ Sbjct: 69 DLPYF------DVCISNTPYQISSPLTFKLLAINPAP---RVCILMFQREFAMRLFAKPG 119 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227 Y RLSV + + + + F P P V S+V+ +P + + + Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLR 179 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268 AF ++ KT+R S LG ++L +E+N R N+ +ED Sbjct: 180 VAFVRKNKTMRSSF--LGTTSVLD--MLESNYRTWCAQNNIPVED 220 >gi|218295759|ref|ZP_03496555.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus Y51MC23] gi|218243918|gb|EED10445.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus Y51MC23] Length = 278 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 70/211 (33%), Positives = 108/211 (51%), Gaps = 14/211 (6%) Query: 3 MNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M N +++ +L + + + GQNFL+ L +I E++ G V E+G G G Sbjct: 1 MANPLTSPKAVRELLERHGLFADRRFGQNFLVSEAHLHRIVEAARPFTG-PVYEVGPGLG 59 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 LT+ L GA +V+ IEKD + P+L++ P + ++ DAL +E+ S Sbjct: 60 VLTRALAEAGA-EVVAIEKDLRLKPVLEETLKGLP--VRLVFQDALAYPWEEVPEGS--- 113 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 ++ANLPYNI T L+ + + L L QKEV ER+TA+ +P YG LS+ Sbjct: 114 LLVANLPYNIATSLVTRLLKTGR----FARLVFLVQKEVAERMTARPKTPAYGLLSLRVT 169 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 +A + D+ P FFP PKV S ++ P Sbjct: 170 HHAEAEKLLDLPPGAFFPPPKVVSALVRLHP 200 >gi|289548364|ref|YP_003473352.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484] gi|289181981|gb|ADC89225.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484] Length = 247 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 116/262 (44%), Gaps = 18/262 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQ+ L+ +LKKI E G +G V+EIG G GNLT +LL ++ IE Sbjct: 1 MRLKKQYGQHLLVSTGVLKKIVEELGVEEGDKVVEIGPGTGNLTLLLLQTPLAELHAIEL 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D IL+ + RL++ DA + ++ ++++ NLPYN+ + ++ N + Sbjct: 61 DPDMLKILQRVE---DKRLQLHHADASRF---PLCSLGENLKVVGNLPYNVASLIVENTV 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P + QKEVGE++ LS + + P F P Sbjct: 115 LHHRCIPL---ALYMVQKEVGEKLQEGA-----SWLSFFVRTFYDVFYIMSVPPQFFRPP 166 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 PKV S ++ + L KK F RRK L+ L+ ++L + G++ Sbjct: 167 PKVNSALVKLVRKDTLPQLDLFEYKKFLDILFSHRRKALKNKLES----SILEKVGVDPM 222 Query: 259 LRAENLSIEDFCRITNILTDNQ 280 LR E L + R+ + D++ Sbjct: 223 LRVEQLDLNTVLRLFAVWLDSK 244 >gi|297294370|ref|XP_001085304.2| PREDICTED: probable dimethyladenosine transferase [Macaca mulatta] Length = 284 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 104/268 (38%), Gaps = 48/268 (17%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIID------------------------------KVVACE 56 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D F +ANLPY I + +F Sbjct: 57 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 110 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F Sbjct: 111 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 167 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252 P PKV S+V+ P P P + + + F ++ KTL + K + LL + Sbjct: 168 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 227 Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278 + + E+ SI D +I ILT Sbjct: 228 IHCSVHNIIIPEDFSIAD--KIQQILTS 253 >gi|126696263|ref|YP_001091149.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9301] gi|166221687|sp|A3PCS3|RSMA_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|126543306|gb|ABO17548.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 274 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 12/262 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ IE D+ Sbjct: 9 KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLNSEIKKLHAIELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L D + + ++ + Q D L V+ + ++IAN+PYNI +L +I Sbjct: 69 LINLLNDKFNNN-DKFSLQQGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125 Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P P Sbjct: 126 GIIRKYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKRICDVPPSSFSPPP 185 Query: 200 KVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254 KV S+++ F P N + + + + K+ + +F RRK LR +L + +++ Sbjct: 186 KVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNTILSNEEINELSES 245 Query: 255 --IETNLRAENLSIEDFCRITN 274 + NLR +++SI+ + ++ Sbjct: 246 SKVCFNLRPQDISIDQWIKLAE 267 >gi|256371337|ref|YP_003109161.1| ribosomal RNA adenine methylase transferase [Acidimicrobium ferrooxidans DSM 10331] gi|256007921|gb|ACU53488.1| ribosomal RNA adenine methylase transferase [Acidimicrobium ferrooxidans DSM 10331] Length = 279 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 13/279 (4%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 + L + P K +GQNFL D NI +K A + +E+G G G+LT L Sbjct: 6 KREIVAHLERIGLEPSKALGQNFLTDGNIARKEAALAAEAGLRVAVEVGPGLGSLTVWLA 65 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 +V+ +E D++ P L ++ + + + I DAL + P ++ANL Sbjct: 66 EYF-DEVVALEADRRLIPALGEVLAARGIDNVRIEHADALA---DPLPLERRPSALVANL 121 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY+ G+++L + F E + ++ Q E +RI A + L V A Sbjct: 122 PYHSGSQILVRLVEEAW---FLERVVVMVQAEFADRIVAAAGTRACSALGVRLALSIDAH 178 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSL 241 + + P VF P P V S ++ P+ P ++ + + F +RR+ LR++L Sbjct: 179 VAAKVPPVVFHPQPTVWSKLVVADRRSEPLAVTEPTTFDATVRAIRHGFERRRQMLRRAL 238 Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 L GI+ RAE+L+++++ + + ++ Sbjct: 239 GD-DELAALDAVGIDPMRRAESLALDEWVALGRAIATSK 276 >gi|317505059|ref|ZP_07963006.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] gi|315663837|gb|EFV03557.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] Length = 209 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 11/208 (5%) Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +E D++ L + + R II +D L++D K F+ P + N PY+I +++ Sbjct: 3 AVEIDRESVAFLHEKYPEL--RDNIIGEDFLRMDLCKVFS-HEPFVLTGNYPYDISSQIF 59 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 F + P T + Q+EV R+ A S YG LSVL +F + V Sbjct: 60 FKMLDNKDLIP---CCTGMIQREVALRMAAGPGSKAYGILSVLVQAWYDVEYLFTVDESV 116 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 F P PKV S VI + + N + C K++ + F +RRK LR S+K++ + A Sbjct: 117 FNPPPKVKSAVIRMMRNQVNELGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEQPASA 176 Query: 254 GIET----NLRAENLSIEDFCRITNILT 277 T R E LS++ F +TN++ Sbjct: 177 EFFTLEMMTKRPEQLSVQQFVELTNLVE 204 >gi|187251110|ref|YP_001875592.1| dimethyladenosine transferase [Elusimicrobium minutum Pei191] gi|186971270|gb|ACC98255.1| Dimethyladenosine transferase [Elusimicrobium minutum Pei191] Length = 261 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 19/260 (7%) Query: 24 YMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 GQ+FL++ ++ KI + +IEIG G G LT LL G + + +IE D Sbjct: 3 KYGQHFLVNEGVIDKIVNAVVDARARHPKARIIEIGPGKGALTLRLLDKGIKDLKLIEID 62 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ + P+ +EIIQ D L D + ++NLPY +L ++ Sbjct: 63 PIMVDHLRGVL---PSGVEIIQSDFLDTDLSLLSENG--VIFVSNLPYINAAEILNKVLN 117 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + S +FQ+E +RI A + Y +S+ + + +SP F P P Sbjct: 118 YKN----FLSAVFMFQREQAQRIKAGEGDTFYSPISLTSQIAADIKSLCRVSPGSFNPPP 173 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN------LLHQA 253 KV S V+ F ++ L Q AF +RK + S+ ++ LL + Sbjct: 174 KVESEVLCFERNIKIQEDLLNGFTLAVQAAFAYKRKNVLNSISEYFKKDKKEIFSLLESS 233 Query: 254 GIETNLRAENLSIEDFCRIT 273 I N RA+NL+ D+ + Sbjct: 234 KISPNCRAQNLTQTDYKVLA 253 >gi|78779250|ref|YP_397362.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9312] gi|119365046|sp|Q31B19|RSMA_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|78712749|gb|ABB49926.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9312] Length = 276 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 134/262 (51%), Gaps = 12/262 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ IE D+ Sbjct: 9 KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLDSEIKKLHAIELDKD 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L D + + ++ + Q D L V+ + ++IAN+PYNI +L +I Sbjct: 69 LINLLNDKFNNN-DKFSLQQGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125 Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P P Sbjct: 126 GIIRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRIQLLSKIKRICDVPPSSFSPPP 185 Query: 200 KVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254 KV S+++ F P N + + + + K+ + +F RRK LR +L + +++ Sbjct: 186 KVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEINELSES 245 Query: 255 --IETNLRAENLSIEDFCRITN 274 + NLR +++SI + ++ Sbjct: 246 SKVCFNLRPQDISIHQWIKLAE 267 >gi|321311060|ref|YP_004193389.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str. Langford 1] gi|319802904|emb|CBY93550.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str. Langford 1] Length = 263 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 14/259 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK GQ FL + I ++IAE LD ++E+G G G +TQ + +RK ++E Sbjct: 2 FRHKKRWGQVFLKNKRIQERIAEYINLLDAKNLLEVGPGEGAITQYI-NYESRKFSLVEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D +L++ + II D L +D E F+ + + N+PY I + +L + Sbjct: 61 DSYLVGLLRERYPD----INIIFGDFLNLDLENLFSEREGL-VFGNIPYYITSPILRKFS 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + + + + QKEV E IT+ +Y +V +F + F P Sbjct: 116 ESKS----FSQAVFMVQKEVFESITSPPKGKNYTSFAVFLQTINDIRKVFYVGKENFVPV 171 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQAG 254 PKV S VIH + I L +++F RK L + K+ E + + Sbjct: 172 PKVDSAVIHLVKKNTKILPYLNEYSLFLKKSFFMPRKKLVNNWKKFLSSEAIEEIFEEHN 231 Query: 255 IETNLRAENLSIEDFCRIT 273 ++ ++R + +S + + +I Sbjct: 232 MDNSVRPDEISSDLYEKIF 250 >gi|327398208|ref|YP_004339077.1| dimethyladenosine transferase [Hippea maritima DSM 10411] gi|327180837|gb|AEA33018.1| dimethyladenosine transferase [Hippea maritima DSM 10411] Length = 241 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 21/254 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL++ + KI E ++EIG G G LT+ L LG +K +V+E D+ Sbjct: 3 AKKQLGQHFLINEGVALKITERLKLA--DLIVEIGGGKGALTEKLKELG-KKTVVVELDK 59 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 LKD S N +++ D +FF + + NLPYN+ ++ N++ Sbjct: 60 DLLTTLKDKISGEDNIF-LVRGD------GRFFKLKKSAWVCGNLPYNVSKAIIKNFVFQ 112 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + F E + + QKEV E I A+ + + SVL +F + P F P PK Sbjct: 113 NE---FVEKMVFMVQKEVAETICAKTAQKRFSKFSVLCQLFYDVEKLFLVKPGSFLPQPK 169 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260 V S V+ F N + + F RKT++ +L+ E + R Sbjct: 170 VDSAVVEFRRKKNLPNID-KGFFSFLNQLFFFPRKTVKNNLRIPLDEEV-------ARKR 221 Query: 261 AENLSIEDFCRITN 274 +L+IE+ I Sbjct: 222 PSDLTIEEMIMIWR 235 >gi|313888579|ref|ZP_07822244.1| putative dimethyladenosine transferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845308|gb|EFR32704.1| putative dimethyladenosine transferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 223 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 17/223 (7%) Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---S 117 +T+ L L A+KV+ +E D++ + K+ +++I D L++D EK Sbjct: 1 MTEELA-LRAKKVVAVEIDEKLRDLHKETLDI--ENVKVIYGDFLELDLEKIVEEEFGDE 57 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++ANLPY + T ++ + + S+T++ QKEV +R+ AQ + YG LSV Sbjct: 58 GFKVVANLPYYVTTPIIEKLLLSKVN---LISITVMVQKEVAKRLAAQPGNKDYGSLSVF 114 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + T F + VF P P V S V++ + L KI + AF RRKTL Sbjct: 115 INYYTDCKYKFQVPSSVFMPKPNVDSAVVNLKMKERE-DLDTDFLFKIVRAAFTTRRKTL 173 Query: 238 RQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRIT 273 S G + L +GI+ RAE LS+E+F ++ Sbjct: 174 LNSFSNSGLPYSKDDIKRALELSGIDGGRRAETLSLEEFIILS 216 >gi|289450164|ref|YP_003475145.1| putative dimethyladenosine transferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184711|gb|ADC91136.1| putative dimethyladenosine transferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 300 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 23/288 (7%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 +N LS Y++ P +GQNF+ D +L+ + + EIGAG GNLT Sbjct: 7 SNDRKDFANYLSGYRLRPNHNLGQNFIYDKGLLQAMVAEMRLPPKCEIWEIGAGTGNLTA 66 Query: 64 MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS------S 117 +L R V IE D L+D + +P ++ +I DALK+ N Sbjct: 67 VLAEQFPR-VTAIEIDPALARPLQDRFTSNP-KVRLIFGDALKLTAADLANSEEENSIID 124 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 I ++ NLPY I T+L+ +++ + L Q+E +RI S +YG L++L Sbjct: 125 NIAVVGNLPYYISTKLIEHFL---LHFHTALQYSFLVQQEFVDRILTPAGSKNYGPLNIL 181 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235 T ++ F P P V+ST+IH IP N + AF +RRK Sbjct: 182 LDNFTTIRKGMTLAATDFMPQPSVSSTLIHIIPQPNSQIDKSTWPDYRNFLHLAFAQRRK 241 Query: 236 TLRQSLKRLGGE----------NLLHQAGIETNLRAENLSIEDFCRIT 273 T+ + RL E L G++ +R E ++ E++ + Sbjct: 242 TMHNTYARLQREYPLLNNTNDLEWLAGVGLKLQIRPEAITPENWLTLY 289 >gi|237751435|ref|ZP_04581915.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879] gi|229372801|gb|EEO23192.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879] Length = 313 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 28/295 (9%) Query: 5 NKSHSLKTILS-HYKIIPKKYMGQNFLLDLNILKKIAE------SSGSLDGITVIEIGAG 57 +K +LK KK +GQ+FL D IL +I + ++ + +IE+G G Sbjct: 27 DKKATLKQHEKSKTHFHHKKSLGQHFLHDSVILDRIFQSIPHDIAAEIDKSVRLIEVGIG 86 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNI 115 G+LT+ LL+ ++ E D + NRL+++Q D LKV + + Sbjct: 87 LGDLTKRLLSK--YSLLAYEIDYDLITQAEKNYHHEIETNRLQLVQADVLKVRHNDSYLL 144 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 SS +++NLPY I T ++ + + ++ QKEV ++ A++ Y LS Sbjct: 145 SSDYFLVSNLPYYIATAIILQALKD----THCKGFLVMTQKEVAQKFCAKQKDSTYCSLS 200 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235 +L + +F + F P PKV S V F LESL AF RK Sbjct: 201 LLAQSFGDISYLFSVPKEAFNPPPKVESAVFCFKRGKCHYTQDLESLLHF---AFLAPRK 257 Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCR---ITNILTDNQ 280 L +L + +++ ++ N+RA + ++++C I N + ++ Sbjct: 258 KLFSNLMQYDKLRDKAMLKHIFQTMQLDENVRAHEVGLQEYCDMLHIYNAMKKDK 312 >gi|257076452|ref|ZP_05570813.1| dimethyladenosine transferase [Ferroplasma acidarmanus fer1] Length = 239 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 25/257 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + K GQ FL D NI K G G V+EIG G G LT +LL+ K+ IE Sbjct: 3 VNFAKKYGQVFLNDKNIAAKEVRLLGIEPGDHVLEIGPGHGILTGILLSEPV-KLTAIEP 61 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D +F+ LK H + II++ L + F II N+PYNI + +LF Sbjct: 62 DHRFYESLKISYHDHIVSGKFNIIKESFLDTEPSYF------DHIIGNIPYNISSPVLFK 115 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + ++S L+ QKE R+ A+ + Y R+++ T R+ ++F+++ VF Sbjct: 116 ILDFN-----FKSSILMVQKEFARRLVARPGTKEYSRITINTSVRSTIKILFNVTRKVFS 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 P P V S VI + + L + K + F RRK L L G Sbjct: 171 PVPDVDSAVISIMKKD--VDIDLANFDKFIAKIFSMRRKKLSTILNYNGP---------F 219 Query: 257 TNLRAENLSIEDFCRIT 273 + R E L + + Sbjct: 220 SEKRPEELDLSQLITLY 236 >gi|154310501|ref|XP_001554582.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10] gi|150851502|gb|EDN26695.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10] Length = 214 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 12/195 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + + + I + + TV+E+G G GNLT +L A+KVI +E Sbjct: 28 FKHNKDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILES-AKKVIAVEV 86 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P RLE++ D +K + F I+N PY I + L+F Sbjct: 87 DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTELPHF------DVCISNTPYQISSPLVFK 140 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +S P ++FQ+E R+TA+ Y RLSV + K T + + + F Sbjct: 141 LLSLPNPP---RCSVVMFQREFALRLTARPGDSLYCRLSVNAQFFAKITPIMKVGKNNFR 197 Query: 197 PSPKVTSTVIHFIPH 211 P P+ S V P Sbjct: 198 PPPQGESCVGRIEPK 212 >gi|217073100|gb|ACJ84909.1| unknown [Medicago truncatula] Length = 225 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 11/184 (5%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I K GQ+ L + ++ I + SG V+EIG G GNLT+ LL G +KVI +E Sbjct: 23 GISFHKSKGQHILKNPLLVDTIVQKSGIKTTDVVLEIGPGTGNLTKKLLEAG-KKVIAVE 81 Query: 78 KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +RL +IQ D LK + F +AN+PY I + L F Sbjct: 82 IDPRMVLELNKRFQGTPSSRLTVIQGDVLKTELPYF------DICVANIPYQISSPLTFK 135 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P + ++FQ+E R+ AQ Y RL+V T + + + + + F Sbjct: 136 LLKHQ---PAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARISHLLKVGRNNFT 192 Query: 197 PSPK 200 P PK Sbjct: 193 PPPK 196 >gi|302519786|ref|ZP_07272128.1| dimethyladenosine transferase [Streptomyces sp. SPB78] gi|302428681|gb|EFL00497.1| dimethyladenosine transferase [Streptomyces sp. SPB78] Length = 284 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 14/217 (6%) Query: 1 MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57 MT + ++ + + + P K GQNF++D N +++I ++ + TV+E+G G Sbjct: 1 MTRTDPLLGPADIRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPG 60 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 G+LT LL + A V +E D + + ++ DAL+V + Sbjct: 61 LGSLTLALLEVAAD-VTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---REL 116 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 +P ++ANLPYN+ +L + + P E ++ Q EV +R+ A S YG Sbjct: 117 PGPAPTALVANLPYNVAVPVLLHMLE---HFPSVERTLVMVQAEVADRLAAPPGSRVYGV 173 Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 SV W I VF+P+P V S ++ + Sbjct: 174 PSVKAAWYAHVKRAGSIGRSVFWPAPNVDSGLVSLVR 210 >gi|157413292|ref|YP_001484158.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9215] gi|166987696|sp|A8G4P1|RSMA_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|157387867|gb|ABV50572.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 274 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 12/262 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ +E D Sbjct: 9 KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L D + + ++ + D L V+ + ++IAN+PYNI +L +I Sbjct: 69 LINLLNDKFNNN-DKFSLQHGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125 Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P P Sbjct: 126 GIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPPP 185 Query: 200 KVTSTVIHFIPHLN--PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254 KV S+++ F P + + LE K+ + +F RRK LR +L + +++ Sbjct: 186 KVFSSLVVFEPINDNLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEMNELSES 245 Query: 255 --IETNLRAENLSIEDFCRITN 274 + LR +++SI + ++ Sbjct: 246 SKVCFKLRPQDISINQWIKLAE 267 >gi|254525470|ref|ZP_05137522.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9202] gi|221536894|gb|EEE39347.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT 9202] Length = 274 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 KK GQ++L++ IL+KI E + + ++EIG G G LT LL +K+ +E D Sbjct: 9 KKRFGQHWLVNKIILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L D + + + + D L V+ + ++IAN+PYNI +L +I Sbjct: 69 LINLLNDKFNNNA-KFSLQHGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125 Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 +E + L QK+V +RI +++ SP+ G LS+ +K + D+ P F P P Sbjct: 126 GIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPPP 185 Query: 200 KVTSTVIHFIPHLN--PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254 KV S+++ F P + + LE K+ + +F RRK LR SL + +++ Sbjct: 186 KVFSSLVVFEPIKDNLRLDISLEKYIDKLLRISFNSRRKMLRNSLNSILSNEEINELSES 245 Query: 255 --IETNLRAENLSIEDFCRITN 274 + LR +++SI + ++ Sbjct: 246 SKVCFKLRPQDISINQWIKLAE 267 >gi|283780372|ref|YP_003371127.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068] gi|283438825|gb|ADB17267.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068] Length = 308 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 32/303 (10%) Query: 3 MNNKSHSLKTILSHY---KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59 M + ++ + S + I P+ GQNFL+DLN+L +A+++ + V+E+G G G Sbjct: 1 MTSARQTVSYLTSRFREAGIRPEIRHGQNFLVDLNLLDLLADAAQITEDDVVLEVGTGLG 60 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------------V 107 +LT L A +V+ IE D++ + ++ N + ++ DAL+ V Sbjct: 61 SLTSRLAERAA-EVVTIEIDERLAAMAEEELEDFDN-VTLVLRDALESKHKLSTEVMDIV 118 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 + ++ ANLPYN+ T ++ N +++D P S+T+ QKE+ +RI A Sbjct: 119 RAKLAEAPGRRFKLAANLPYNVATLIISNLLASDPCPV---SMTVTIQKELADRIVAPHG 175 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKI 225 + Y LS+ + +A ++ I P VF+P PKV S ++H Sbjct: 176 TKDYSGLSIWVQSQCEAKIVRIIPPQVFWPPPKVHSAILHLEHSQALASQLRDPAYFHSF 235 Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---------TNLRAENLSIEDFCRITNIL 276 + F RRK LR L +L + L + I+ RAE L + +++ L Sbjct: 236 IRAIFLHRRKFLRGVLAKLF-DGQLTKNDIDQLFVEKQLTPETRAEELPVATLVELSHWL 294 Query: 277 TDN 279 D Sbjct: 295 LDR 297 >gi|149174955|ref|ZP_01853579.1| dimethyladenosine transferase [Planctomyces maris DSM 8797] gi|148846292|gb|EDL60631.1| dimethyladenosine transferase [Planctomyces maris DSM 8797] Length = 306 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 28/293 (9%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L + + P+ +GQNFL+DLNI++ + E V+E+G + Sbjct: 12 LMQLFERHGFNPRSDLGQNFLIDLNIIEYVVEHGHIQPNDIVLEVGT-GTGGMTTFMAQQ 70 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK------------FFNISS 117 A VI +E D+ + ++ + ++ N + ++ DALK + S Sbjct: 71 AAHVITVEYDRNMHTLAQEATQKYDN-ITLLNCDALKNKNHMSPIVLDEIAAQLEAHPGS 129 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++ANLPYN+ T ++ N +++D W + + Q E+G ++ + S +YG LSV Sbjct: 130 QLKLVANLPYNVATPIISNIVASDLP---WNRMVVTIQYELGLKMACKPTSSNYGALSVW 186 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRK 235 + ++ + P VF+P P V S ++ P+ + + F RRK Sbjct: 187 LQSQCFVKLLKKLGPTVFWPRPGVDSAIVQLTPNPPLKQKIVDRVFFQDFLRRVFQHRRK 246 Query: 236 TLRQSLKRLGGENL--------LHQAGIE-TNLRAENLSIEDFCRITNILTDN 279 +R +L + + L L GI+ RAE L++ + + N + Sbjct: 247 LMRSTLVGMYSKQLPKADVDAILLSHGIDKEKTRAEELNVPELIELANSFQEQ 299 >gi|315453543|ref|YP_004073813.1| putative dimethyladenosine transferase [Helicobacter felis ATCC 49179] gi|315132595|emb|CBY83223.1| putative dimethyladenosine transferase (16S rRNA dimethylase) [Helicobacter felis ATCC 49179] Length = 292 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 37/291 (12%) Query: 25 MGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQ 80 +GQ+FL D L +I +S + + ++EIG G G+LT LL G++ +I E D+ Sbjct: 4 LGQHFLHDAFYLDQILQSIPYEHFNNEVQLVEIGVGLGDLTTRLLDRLGSKTLIAYEVDR 63 Query: 81 QFFPILKDISSQHP-NRLEIIQDDAL----------------KVDFEKF-FNISSPIRII 122 LK S RLE++ D + ++ + F P ++ Sbjct: 64 ALAIGLKSRLSPASWARLELVVGDVMERKGVGNGTYDVLANTRLRVPRVGFLCDRPYFLV 123 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +NLPY I T ++ + + ++ Q EVG + A S YG LSVL G Sbjct: 124 SNLPYYIATPIIARALRDSLCV----GMVVMTQLEVGLKFCAHVGSKDYGALSVLAGLTC 179 Query: 183 -KATMMFDISPHVFFPSPKVTSTVIHFIPHL----NPIPCCLESLKKITQEAFGKRRKTL 237 + + F++ F P PKV S+VI I H P +E L+ ++ F RKTL Sbjct: 180 TRRELCFEVPKEAFNPPPKVRSSVIALIKHPLQDCAPSLEVIE-LETALKQCFQANRKTL 238 Query: 238 RQSLKRLGGENLLH----QAGIETNLRAENLSIEDFCRIT-NILTDNQDIA 283 +LK + +L + G++ R LS D+ + +++ ++ A Sbjct: 239 SNNLKGICSPEVLQTFLSRHGLKPQARPHELSPTDYLDLACDLIQQSKIGA 289 >gi|134097339|ref|YP_001103000.1| N-6-aminoadenine-N-methyltransferase,erythromycin resistance [Saccharopolyspora erythraea NRRL 2338] gi|291009285|ref|ZP_06567258.1| rRNA (adenine-N(6)-)-methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|150421549|sp|P07287|ERME_SACEN RecName: Full=rRNA adenine N-6-methyltransferase; Short=NMT; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|6224590|emb|CAB60001.1| N-6-aminoadenine-N-methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909962|emb|CAM00074.1| N-6-aminoadenine-N-methyltransferase,erythromycinresistance [Saccharopolyspora erythraea NRRL 2338] Length = 381 Score = 178 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 29/271 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S HPN +E++ D L + P + +PY I + ++ + A Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIPYGITSAIVDWCLEA- 147 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P E+ T++ Q E + T + RL+V+T + + + +F P PKV Sbjct: 148 ---PTIETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFVEKVDRRLFKPVPKV 202 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN- 258 S ++ P+ LE + + + F ++ SL R + A Sbjct: 203 DSAIMRLRRRAEPLLEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAALDHAGV 262 Query: 259 --------LRAENLSIEDFCRITNILTDNQD 281 +R E + R+ L + Sbjct: 263 GGGAVVAYVRPE-----QWLRLFERLDQKNE 288 >gi|300681336|emb|CAZ96067.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570] Length = 319 Score = 178 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 22/269 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 G N++L+ + +++ ++G +G V+EIG G G+LT LL GA V +EKD+ + Sbjct: 54 GANYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKDKHMATL 112 Query: 86 LKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 +KD +L++I++D L EK+ ++++NLP+N+ T ++ Sbjct: 113 IKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSTEVVKL 171 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + + ++ Q E R+ P Y ++V + +K F + F Sbjct: 172 LL---PMGDVFSVVVIMLQDETAVRLADTSIQIPEYRPINVFVNFYSKPEYKFRVDRDNF 228 Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248 FP PKV VI F P +S + AF +RK LR+SL+ L E Sbjct: 229 FPQPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSSSEIEA 288 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277 L G+ R +L ++DF R+ N LT Sbjct: 289 ALDNIGLPVTARPSDLILDDFVRLHNHLT 317 >gi|288818058|ref|YP_003432406.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6] gi|288787458|dbj|BAI69205.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6] gi|308751659|gb|ADO45142.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6] Length = 249 Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 19/258 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQ+ LL ++K I E +G ++EIG G GNLT+ LL +K+ +IE Sbjct: 1 MRLKKRYGQHILLSKGVIKAIVERLSIQEGDILLEIGPGTGNLTRELLNTPLKKLYLIEI 60 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D Q LK I +R+EI DA + D ++++ NLPYN+ + ++ N + Sbjct: 61 DSQMVHELKKIE---DDRVEIFLADATQFDICSL---GGELKLVGNLPYNVASLIVENTV 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 PF + QKEV +++ LS + + FFP Sbjct: 115 IHRKCIPF---ALFMLQKEVAQKLLKGP-----SWLSTFVRTFYDLNYVMSVPARFFFPK 166 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 PKV S ++ F+ + + + K+ + + RRK ++K E++L A I+ Sbjct: 167 PKVQSALLEFVRKPDGEMIEDEKDYKRFLTKLYSMRRK----AIKSKIEEDILKMANIDP 222 Query: 258 NLRAENLSIEDFCRITNI 275 R E LS+ + N+ Sbjct: 223 LKRVEELSVAHVLLLYNL 240 >gi|221480961|gb|EEE19375.1| ribosomal RNA adenine dimethylase domain-containing protein, putative [Toxoplasma gondii GT1] Length = 914 Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 126/276 (45%), Gaps = 25/276 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 PK+ +GQNFL D NI + IA S G+ V+E+G G G +T+ LL R + + Sbjct: 608 FKPKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAV 666 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135 E D + +L L II D L+V + + + + NLP+ + ++LL Sbjct: 667 ETDPRAVSLLSRRLP----TLNIIHGDVLQVSWPDLAQERGTRLSVAGNLPFYLTSQLLC 722 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + F + + Q E+ ER+TA+ Y RLSV+ ++ + VF Sbjct: 723 CLLDS---WRFIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVF 779 Query: 196 FPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 +P PKV + ++H P+ + + AFG+RRK LR SLK +L Sbjct: 780 YPVPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKP-----VL 834 Query: 251 HQAGIET----NLRAENLSIEDFCRITNILTDNQDI 282 +G +LR + LS DF +T + ++D Sbjct: 835 PHSGAVPERFASLRPQQLSPTDFLELTEAIFPSKDA 870 >gi|242063872|ref|XP_002453225.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor] gi|241933056|gb|EES06201.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor] Length = 261 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 18/246 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL GA V +EKD+ Sbjct: 2 PRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKDK 60 Query: 81 QFFPILKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSPIRIIANLPYNIGT 131 ++KD +L++I++D L EK+ ++++NLP+N+ + Sbjct: 61 HMATLVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSS 119 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDI 190 ++ + + + L+ Q E R+ A P Y ++V + +K F + Sbjct: 120 EVVKLLL---PMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFVNFYSKPEYKFRV 176 Query: 191 SPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 FFP PKV VI F P +S + AF +RK LR+SL+ L Sbjct: 177 DRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSS 236 Query: 248 NLLHQA 253 + + A Sbjct: 237 SEIEAA 242 >gi|301101445|ref|XP_002899811.1| dimethyladenosine transferase, putative [Phytophthora infestans T30-4] gi|262102813|gb|EEY60865.1| dimethyladenosine transferase, putative [Phytophthora infestans T30-4] Length = 349 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 124/305 (40%), Gaps = 53/305 (17%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLD----GITVIEIGAGPGNLTQMLLTLGAR-KVIVI 76 K+ +GQ+ L+ IL +I +S D + V+EIG G GNLT LL + + +V + Sbjct: 37 KRKLGQHLLVSDGILDQIVAASELSDICSDTVRVLEIGPGTGNLTSTLLQVSPKMQVHAV 96 Query: 77 EKDQQFFPILKDISS----------QHPN--RLEIIQDDALKVDFEKFFNISSPIRIIAN 124 E D + LK +H + + D + + EK FN +AN Sbjct: 97 EFDPRMVEQLKLRFPTEIESGSLVLEHSDFEDFRFVPDQKQETNQEKIFN-----ACVAN 151 Query: 125 LPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 +PY + + ++ + +P ++ LL Q+E R+ A+ + Y RLS T Sbjct: 152 IPYQLSSIVVSRLSNYMHRFPKTFKCAVLLVQEEFASRLLAEPGNKSYSRLSANTALVAN 211 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQ 239 T + + F P PKV S VI +P +P E + + + F ++ KTLR Sbjct: 212 VTSVAKVPREHFLPPPKVDSRVIKLVPRAAALPSHDEQFFQKFDALLRLCFERKNKTLRA 271 Query: 240 SLKRLGG-------------------------ENLLHQAGIETNLRAENLSIEDFCRITN 274 L E L +G+ +N RA +S+ +F ++ Sbjct: 272 LLLAKTARSQYELKEDTETEGEDKHQVVTERVEAALEASGLTSN-RAVKVSVTEFIKLLQ 330 Query: 275 ILTDN 279 L + Sbjct: 331 ELQER 335 >gi|167042535|gb|ABZ07259.1| putative ribosomal RNA adenine dimethylase [uncultured marine microorganism HF4000_ANIW133F6] gi|167043080|gb|ABZ07791.1| putative ribosomal RNA adenine dimethylase [uncultured marine microorganism HF4000_ANIW141C7] Length = 290 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 31/276 (11%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 I P + +GQ+FLLD ++ + E +G +EIG GPG+LT LL GAR V Sbjct: 17 IRPDRALGQHFLLDEAVIARAVELAGVDSPITAASHCLEIGPGPGSLTLELLRTGAR-VT 75 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 +E D + L + RL + Q DAL+VD+ + I++NLP+ I + +L Sbjct: 76 ALEVDAEAIAHLGRVFGTADGRLSVQQIDALQVDWPTDIS-----HIVSNLPFQISSPVL 130 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 P + LL Q E ER+ + + G L + + +SP Sbjct: 131 DRIQKHHARNP-LSGIVLLVQDEFAERMVMKGGNASRGPLGHSLWLQFDIELDLRVSPSA 189 Query: 195 FFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR--------- 243 F P+P+VTS ++ P N + + F RR+ LR +LKR Sbjct: 190 FSPAPRVTSRLVALKPATRENTDQIDERLFRLVISSCFANRRRKLRTTLKRPPRRLNRIN 249 Query: 244 -------LGGENLLHQAGIETNLRAENLSIEDFCRI 272 G L A ++ LR ENL+ ED+ + Sbjct: 250 GWHKERWTRGIERLEPALLD--LRPENLTSEDWASL 283 >gi|268678704|ref|YP_003303135.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM 6946] gi|268616735|gb|ACZ11100.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM 6946] Length = 281 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 24/264 (9%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I KK GQNFL D ++ KI +S + +IEIG G G+LTQ LL + V E Sbjct: 2 IEAKKKFGQNFLKDTTVVSKIIQSM-PQNNRKLIEIGPGLGDLTQALLRVKP--VTAYEV 58 Query: 79 DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D+ L+ + +L ++Q D LK FEK P ++ANLPY I T ++ Sbjct: 59 DEDLCVYLRKKYTTKLAEGQLILVQTDVLK-QFEKGSLCEEPYDLVANLPYYIATTIILE 117 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + +S+ ++ QKEV E+ A + + L++L AT++FD+SP F Sbjct: 118 ALEDQNC----KSMIVMVQKEVAEKFAALPKTKEFTSLAILAQSIGTATILFDVSPESFE 173 Query: 197 PSPKVTSTVIHFIPHLNPIPCCL----------ESLKKITQEAFGKRRKT-LRQS---LK 242 P PKV S+++ + + KK + +F RKT LR Sbjct: 174 PQPKVVSSILKIDKQTEFVDGKFSGIFENNEQLQKFKKYLRCSFQSPRKTWLRNISSEFD 233 Query: 243 RLGGENLLHQAGIETNLRAENLSI 266 + +++H+ + +R + + Sbjct: 234 KSCVLHVMHEQNLPETIRPHEIGV 257 >gi|325990151|ref|YP_004249850.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma suis KI3806] gi|323575236|emb|CBZ40901.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma suis] Length = 262 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 14/265 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 I K+ + Q FL + NI K+IA + S ++EIG G G +TQ + L + + +E Sbjct: 4 IKQKRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEV 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137 D L + I+ D L + E + + N+PY+I T++L + Sbjct: 63 DSSLCSHLTSKFTTA----NILNKDFLLLQEEDIQLFNEQKVLLFGNIPYSISTKILLKF 118 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + + +E L+ QKE E I+A+ N+ Y L+V + +F+I+ F+P Sbjct: 119 L----YINHFEESFLMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFYP 174 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---- 253 PKV S L+ ++ F RK L +L+++ EN+L + Sbjct: 175 KPKVDSIFFSIKKKEKHSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYKN 234 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 + N+R + L E ++ L + Sbjct: 235 NLLKNIRIQELEPEKIMKLFKDLKE 259 >gi|237844915|ref|XP_002371755.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49] gi|211969419|gb|EEB04615.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49] Length = 908 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 123/272 (45%), Gaps = 17/272 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 PK+ +GQNFL D NI + IA S G+ V+E+G G G +T+ LL R + + Sbjct: 602 FKPKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAV 660 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135 E D + +L L II D L+V + + + + NLP+ + ++LL Sbjct: 661 ETDPRAVSLLSRRLP----TLNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLTSQLLC 716 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + + F + + Q E+ ER+TA+ Y RLSV+ ++ + VF Sbjct: 717 CLLDS---WRFIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVF 773 Query: 196 FPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 +P PKV + ++H P+ + + AFG+RRK LR SLK + Sbjct: 774 YPVPKVDAALVHIKFRQEPLEKILRGVDPRQFRNVLHAAFGQRRKMLRSSLKPVLPHGGA 833 Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 +LR + LS DF +T + ++D Sbjct: 834 VPERF-ASLRPQQLSPTDFLELTEAIFPSKDA 864 >gi|325120439|emb|CBZ55993.1| putative dimethyladenosine transferase [Neospora caninum Liverpool] Length = 367 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 21/236 (8%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +K GQ+ L + +L KI +++ TV+EIG G GNLT LL + AR+V+ ++ Sbjct: 48 GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALD 106 Query: 78 KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + +K + + L + DAL+ D F P Sbjct: 107 VDARMVSEVKKRAISNGFMNLVVRHGDALRSDLGTFDAQQPP------------------ 148 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + L+FQKE GER+ AQ +Y RL+ + + F Sbjct: 149 -LQERDTSTVTRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVEAKHFT 207 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S V+ +P N + + + + FG++ +TL +R ++L Sbjct: 208 PPPKVDSVVVKVVPRPNLLDVDFKEWDGLMRICFGRKNRTLHALFRRSSILSMLEA 263 >gi|296420592|ref|XP_002839853.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636059|emb|CAZ84044.1| unnamed protein product [Tuber melanosporum] Length = 294 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 37/236 (15%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I +G V+E+G G GNLT +L ARKVI +E Sbjct: 35 FRMNTDLGQHILKNPGVAQAIVNKAGLKQSDVVLEVGPGTGNLTVKILEQ-ARKVIAVEM 93 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P R+EI+ D +K + F I+N PY I + L+F Sbjct: 94 DPRMAAELTKRVQGKPEQTRVEILLGDVIKTELPYF------DVCISNTPYQISSPLVFK 147 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + L+FQ+E R+ AQ Y RLS Sbjct: 148 LLALSPAP---RTCILMFQREFAMRVVAQPGDTLYCRLS--------------------- 183 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 V S+VI P P + + + F ++ KT+ K LL + Sbjct: 184 ----VESSVIRIEPKNPRPPISYDEWDGLLRIVFVRKNKTIAAGFKSSAVMALLER 235 >gi|325973708|ref|YP_004250772.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois] gi|323652310|gb|ADX98392.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois] Length = 259 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 14/262 (5%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K+ + Q FL + NI K+IA + S ++EIG G G +TQ + L + + +E D Sbjct: 4 KRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEVDSS 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISA 140 L + I+ D L + E + + N+PY+I T++L ++ Sbjct: 63 LCSHLTSKFTTA----NILNKDFLLLQEEDIQLFNEQKVLLFGNIPYSISTKILLKFL-- 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + +E L+ QKE E I+A+ N+ Y L+V + +F+I+ F+P PK Sbjct: 117 --YINHFEESFLMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFYPKPK 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256 V S L+ ++ F RK L +L+++ EN+L + + Sbjct: 175 VDSIFFSIKKKEKYSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYKNNLL 234 Query: 257 TNLRAENLSIEDFCRITNILTD 278 N+R + L E ++ L + Sbjct: 235 KNIRIQELEPEKIMKLFKDLKE 256 >gi|126465678|ref|YP_001040787.1| dimethyladenosine transferase [Staphylothermus marinus F1] gi|126014501|gb|ABN69879.1| dimethyladenosine transferase [Staphylothermus marinus F1] Length = 268 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 134/269 (49%), Gaps = 25/269 (9%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +L + I P+K + QNF+++ I+ + L T++EIGAG G+L+ L ++ Sbjct: 19 LLRKHGIRPRKKLSQNFIVNPRIIHDFLK--HVLPNKTLLEIGAGIGSLSYYLSRKASKY 76 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 + IE D++ I +D+ S R +I +AL +D+ ++I+N PY+I + Sbjct: 77 SVFIEIDERLSRICRDLISP---RGILINGNALDLDWS-------VEQVISNAPYHITSD 126 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ +++ +FQK+V +R+ A+ + YGR++VLT P Sbjct: 127 IIVKTARSNSVGY----AVFVFQKDVVDRLLARPGTKEYGRITVLTRLVFDIEKGPVYPP 182 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247 F+P P+V+S +I + + ++++T+ F KRRK ++LK + E Sbjct: 183 IFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRK---KALKTIMSELGLNI 238 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276 +++ + GI+ R +LS E F ++ + Sbjct: 239 DVIRRLGIDDKARVYDLSPEVFLKLAEEI 267 >gi|76799748|ref|ZP_00781834.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (Highlevel kasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Streptococcus agalactiae 18RS21] gi|76584901|gb|EAO61573.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (Highlevel kasugamycin resistance protein ksgA) (Kasugamycindimethyltransferase) [Streptococcus agalactiae 18RS21] Length = 171 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 10/177 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + +K+ + + IL + KK GQNFL D NIL+KI +++ G+ VIEIG G G Sbjct: 1 MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D ++ N ++++ D LK D + F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 PI+++ANLPY I T +L + I + + ++ QKEV +RI+A N+ YG Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMIQKEVADRISAMPNTKAYGS 171 >gi|119719407|ref|YP_919902.1| ribosomal RNA adenine methylase transferase [Thermofilum pendens Hrk 5] gi|119524527|gb|ABL77899.1| dimethyladenosine transferase [Thermofilum pendens Hrk 5] Length = 270 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 127/272 (46%), Gaps = 22/272 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++ L I K+ +GQ+FL+D + +IA G V E+G G G+LT L Sbjct: 6 VREALRS--IRYKRRLGQHFLVDDTVASRIASFVN---GEDVYEVGCGLGSLTLPLSERS 60 Query: 70 ARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A V EKD+ L +++ + ++I+ DAL++D + S +++N P+N Sbjct: 61 AY-VFCCEKDEALALFLSRELYRRGIGNVDIMVGDALRIDLSR-----SSHLVVSNTPFN 114 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I ++L+ + L Q+EV ER+ A+ + YGRLSV++ +F Sbjct: 115 ISSQLVVKLC----YDEGLLKAYLGLQREVAERLYAKPGTREYGRLSVISQLCFSIERLF 170 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------ 242 D+ P+ F P PKV ++ + +P + +++ ++ F + + +L+ Sbjct: 171 DVPPNAFLPPPKVFTSFVRLVPLRRLGAEDVRLVEEFSRRIFPYINRVVTTALRIGLGVN 230 Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 R E+L+ ++ + + R ++ E+ + Sbjct: 231 REVAEDLVRESNVLGSRRVREINPEEVLALAR 262 >gi|311086456|gb|ADP66537.1| dimethyladenosine transferase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 220 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 111/213 (52%), Gaps = 8/213 (3%) Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIG 130 ++IVIE DQ +LK S ++L + +AL +F F+ IRI NLPYNI Sbjct: 7 ELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLIRIFGNLPYNIS 64 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T L+ + + + QKEV ER+ + + YGRLS+++ + ++ ++ Sbjct: 65 TSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKILLNV 121 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 SP F P PKV S I+ PH N + L IT++AF RRK LR SLK L E Sbjct: 122 SPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLFSEK 181 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 L + I +NLRAEN+S+ +C++ N L + Sbjct: 182 ELIKLEINSNLRAENISVSQYCKLANYLYKKSN 214 >gi|116197625|ref|XP_001224624.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51] gi|88178247|gb|EAQ85715.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51] Length = 371 Score = 174 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 16/205 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + I I + + V+E+G G GN+T L + +E Sbjct: 32 FRFDKDFGQHILKNPGISDAIVDKAYLKPTDVVVEVGPGTGNITVRALDKAKKLTRAVEL 91 Query: 79 DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + P +LE+I D +K+ + +I+N PY I + L+F Sbjct: 92 DPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFK 146 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P L+FQ+E +R+ A+ Y RLSV + + + F Sbjct: 147 MLAMPNPP---RVAVLMFQREFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGKQNFK 203 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES 221 P PKV S V NP P S Sbjct: 204 PPPKVESDV------ANPYPGVRRS 222 >gi|224373783|ref|YP_002608155.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Nautilia profundicola AmH] gi|223588383|gb|ACM92119.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Nautilia profundicola AmH] Length = 219 Score = 174 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 15/229 (6%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 VIEIG G G+LT+ LL R+V E D+ ILK L + D Sbjct: 2 PKTDNMVIEIGPGLGDLTEKLLEK--RRVTAYEIDKDLCEILKKKFP----NLNLKCGDV 55 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 L+ E N +IANLPY I T ++ + +++ +L QKEV ++ +A Sbjct: 56 LEFWQETLEN--EKYDLIANLPYYIATNIILKALKDKNA----KNILVLIQKEVADKFSA 109 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224 + +Y L++L K +FDI P F P+PKVTS+VI F N E K Sbjct: 110 KAGDKNYSSLAILAQSVAKVKKLFDIPPGAFVPAPKVTSSVILFEKFENSFD---EEFAK 166 Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 + AF RKTL+++L G+ N+R + F ++ Sbjct: 167 FLKVAFANPRKTLKKNLSAKYKNFNPEDFGLAKNIRPHQIDGSTFFQLF 215 >gi|297526046|ref|YP_003668070.1| ribosomal RNA adenine methylase transferase [Staphylothermus hellenicus DSM 12710] gi|297254962|gb|ADI31171.1| ribosomal RNA adenine methylase transferase [Staphylothermus hellenicus DSM 12710] Length = 268 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 19/266 (7%) Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 IL + + P+K + QNF+++ I+ + L T++EIGAG G+L+ L ++ Sbjct: 19 ILRKHGVRPRKKLSQNFIVNPRIIHDFLK--HVLPNKTLLEIGAGIGSLSYYLSRKVSKY 76 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 + IE D++ I +D+ S R +I +AL +D+ ++ +N PY+I + Sbjct: 77 SVFIEIDERLSRICRDLISP---RGILINGNALDLDWS-------VEQVFSNAPYHITSD 126 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ E +FQK+V +R+ A+ + YGR++VLT P Sbjct: 127 IIVK----TARSNSVEYAVFVFQKDVVDRLLARPGTKEYGRITVLTRLVFDIERGPTYPP 182 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT-LRQSLKRLGGE-NLL 250 F+P P+V+S +I + + ++++T+ F KRRK L+ ++ LG + + Sbjct: 183 VFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRKKALKTIMRELGLSIDDV 241 Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276 + G++ R +LS E F ++ + Sbjct: 242 RRLGVDEKARVYDLSPEVFLKLAEEI 267 >gi|149194711|ref|ZP_01871806.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2] gi|149135134|gb|EDM23615.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2] Length = 233 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 16/235 (6%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 VIEIG G G+LT+ LL R+V+ E D++ ILK L + D Sbjct: 2 PKSDNLVIEIGPGLGDLTEKLLEK--RQVLAYEIDRELCEILKKKFP----NLNLKCGDV 55 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 L+ E N + +IANLPY I T ++ + +++ +L QKEV ++ +A Sbjct: 56 LEYWQESLAN--TKYDLIANLPYYIATNIILRALKDKNA----QNILVLIQKEVADKFSA 109 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224 + YG LS+L +FDI P F P+PKV S+VI F + E K Sbjct: 110 KVGDKIYGSLSILASQVANVKKLFDIPPGAFVPAPKVMSSVILFEKFKDSYN---EDFAK 166 Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + AF RKTL ++L N + G+ +R + + F ++ + L + Sbjct: 167 FLKIAFANPRKTLNKNLSVKYNFNP-SEFGLADTIRPHQVDADTFFQLFSALKER 220 >gi|118388069|ref|XP_001027135.1| dimethyladenosine transferase family protein [Tetrahymena thermophila] gi|89308905|gb|EAS06893.1| dimethyladenosine transferase family protein [Tetrahymena thermophila SB210] Length = 345 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 30/227 (13%) Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 + L++ +L I E S V+EIG G GNLT +LL A+KVI +E D + L Sbjct: 16 HILVNPQMLHSIVEKSAIRPTDIVLEIGPGTGNLTALLLE-KAKKVIAVEIDPRMVAELN 74 Query: 88 DIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 SQH ++ E+IQ DA+ +F FF++ +AN PY I + L+F +S P Sbjct: 75 KRFKYSQHAHKFELIQGDAISTEFP-FFDVC-----VANTPYQISSPLVFKLLSHR---P 125 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+FQ LSV +K + + + F P PKV S+V Sbjct: 126 LFRHAVLMFQ------------------LSVNVQLLSKCDHLIKVGKNNFKPPPKVESSV 167 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 I P + + F ++ K L K +L + Sbjct: 168 IRIEPKNPAPVLNYIEWDGLLRVCFMRKNKQLSAIFKNKSVLQVLEK 214 >gi|75753575|gb|ABA26919.1| KsgA [Vibrio harveyi] Length = 143 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + + + QKEV R+ A S YGRL+V+ + K + ++ P F P PKV S V+ Sbjct: 6 IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVV 65 Query: 207 HFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264 +P+ P P L L+++ +E F +RRKT+R K L +L + G+ ++R ENL Sbjct: 66 RLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVNPSMRPENL 125 Query: 265 SIEDFCRITNILTDN 279 +++ F + N L DN Sbjct: 126 TLQQFVAMANWLADN 140 >gi|269219262|ref|ZP_06163116.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211409|gb|EEZ77749.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 350 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 126/340 (37%), Gaps = 80/340 (23%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI---------- 52 M SH ++ + S I P K +GQNF+ D +++I +G G V+ Sbjct: 1 MLGASH-IRELASTLGIRPTKTLGQNFVHDAGTVRRIVREAGVRPGDVVLEVGPGLGSLT 59 Query: 53 -------------EIGAGP-GNLTQMLLTL---GARKVIVIEKD------------QQF- 82 EI G L + ++ V D + Sbjct: 60 LALLEAGAAVCAVEIDPVLAGALESTVAARMPEAVERLAVANLDAMDVKAPSNLPIPRLL 119 Query: 83 ----------FPILKDISSQHPNRLEIIQDDA----LKVDFEKF----FNISSPIRIIAN 124 + + P ++ + A L E+F N++ P R++AN Sbjct: 120 RSEEGRAHGRAESAPETAELEPGSVDFAGETARTGRLPEKPERFVASTRNLAEPSRLVAN 179 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPYN+ + + A P ++ T++ Q EV +R+ A S YG S W +A Sbjct: 180 LPYNVAVPIFLGLLEA---LPSIQAATVMVQAEVADRLAASPGSRTYGVPSAKASWYGEA 236 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFG 231 IS +VF+P P V S +++F H E + + AF Sbjct: 237 ARGAKISRNVFWPIPNVDSALVNFKRHGALPWLPADVAGRGAFADVAREDVFAVIDAAFA 296 Query: 232 KRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSI 266 +RRKTLR +L G E+LL AGI+ R E L I Sbjct: 297 QRRKTLRAALATWAGSAARAEDLLVFAGIDPKARGEQLGI 336 >gi|221501682|gb|EEE27446.1| riboxomal RNA adenine dimethylase domain-containing protein, putative [Toxoplasma gondii VEG] Length = 912 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 30/281 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARK---- 72 PK+ +GQNFL D NI + IA S G+ V+E+G G G +T+ LL R Sbjct: 601 FKPKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPRMSDFV 660 Query: 73 -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIG 130 + E D + + S+ L II D L+V + + + + NLP+ + Sbjct: 661 DLCSCETDPRAVSL-----SRASPTLNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLT 715 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 ++LL + + F + + Q E+ ER+TA+ Y RLSV+ ++ + Sbjct: 716 SQLLCCLLDS---WRFIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKL 772 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 VF+P PKV + ++H P+ + + AFG+RRK LR SLK Sbjct: 773 PRSVFYPVPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKP-- 830 Query: 246 GENLLHQAGIET----NLRAENLSIEDFCRITNILTDNQDI 282 +L +G +LR + LS DF +T + ++D Sbjct: 831 ---VLPHSGAVPERFASLRPQQLSPTDFLELTEAIFPSKDA 868 >gi|301166053|emb|CBW25627.1| dimethyladenosine transferase [Bacteriovorax marinus SJ] Length = 267 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 23/270 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 K +GQ+FL N++ I + +IE+G GPG LT+ L VIEKD+ Sbjct: 8 ADKNLGQHFLRSQNVIDSITNDFKE-EAQAIIEVGPGPGILTEFLAKHE-LPFFVIEKDK 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPYNIGTRLLFN 136 +F L+ L DAL++ E FF I +++NLPYN+ LL + Sbjct: 66 RFPEYLEQFIPSEAITLS----DALEIHLEDFFEQKEINNKDIWLVSNLPYNVSVPLLIS 121 Query: 137 WISADTWPPFWESLTLLFQKEVGERITA---QKNSPHYGRLSVLTGWRTKATMMFDISPH 193 +I A P + +TL+FQ+EV +++ + K + G L VL+ +++ P Sbjct: 122 FIKA----PQIKYMTLMFQREVADKVISFMNPKKNKSMGSLLVLSQTYFDVSVLCQAPPG 177 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG----E 247 F P PKV STV+ F NP+ + + ++ F +RK L LK Sbjct: 178 AFQPPPKVDSTVVSFKRRENPVIALSEFKQFESFLRKLFQFKRKQLGSVLKSHYSPEKLA 237 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 + ++G+ RAE+ S+E + L Sbjct: 238 DAFEKSGVLRTDRAESFSLEIIQNLYKELR 267 >gi|156937848|ref|YP_001435644.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I] gi|156566832|gb|ABU82237.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I] Length = 243 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 25/248 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 K L+ I P K MGQNF ++ I++ S G VIEIGAG G LT L + Sbjct: 5 TKAKLAELGIRPSKKMGQNFTVNPKIIEFF--LSEVPSGEVVIEIGAGLGALTAPLSKV- 61 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ++KVI IEKD + LK ++ + +E++ DAL++ + +P+ ++ +LPY+I Sbjct: 62 SKKVIAIEKDLRLCNYLKSLNLE---NVEVVCGDALEL------ELDAPV-VVGSLPYSI 111 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 LL + W L QKEV ER+ A+ + YGRL+VL +A + Sbjct: 112 SGPLLAKLFTEGRWNKG----VFLLQKEVAERLVAEPGTKEYGRLTVLASLCCEARLGPV 167 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL----KRLG 245 P F+P P+V S + I + + F +R K R+ L R Sbjct: 168 WGPESFYPKPEVLSRHVILIKKR----SVPKEFSEFLACVFSQRNKKARKVLPSCGARWE 223 Query: 246 GENLLHQA 253 GE + + Sbjct: 224 GEERVREL 231 >gi|322379602|ref|ZP_08053939.1| dimethyladenosine transferase [Helicobacter suis HS1] gi|322380213|ref|ZP_08054444.1| dimethyladenosine transferase [Helicobacter suis HS5] gi|321147379|gb|EFX42048.1| dimethyladenosine transferase [Helicobacter suis HS5] gi|321147996|gb|EFX42559.1| dimethyladenosine transferase [Helicobacter suis HS1] Length = 292 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 40/290 (13%) Query: 25 MGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD 79 +GQ+FL D + L +I +S D I ++EIG G G+LT LL + ++ E D Sbjct: 4 LGQHFLHDAHYLGQILQSIPYEHFKDWIQLVEIGVGLGDLTTRLLNKLESPKSLLAYEVD 63 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVD----------------------FEKFFNISS 117 L RLE++ D ++ E F Sbjct: 64 PGLAQRLYHKLGPLSERLELVVGDVMQYKGINGADRQVCIQTADRDIRLSVSETGFLCQK 123 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 P +++NLPY I T ++ + + ++ Q EV ++ A +S +YG LSVL Sbjct: 124 PYFLVSNLPYYIATPIITRALRDALCI----GMAVMVQLEVADKFCAPVHSSNYGALSVL 179 Query: 178 TGWRT-KATMMFDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGK 232 + ++F ++ F P PKV S + + L+SL+ + + F Sbjct: 180 ADSLCWQRHLLFKVNKEAFNPPPKVQSAFMRLLKKPLVERETKGWDLKSLEHLLKICFKA 239 Query: 233 RRKTLRQSLKRLGGENLLH----QAGIETNLRAENLSIEDFCRITNILTD 278 RKTL +LK + +E+ LR L + + L + Sbjct: 240 NRKTLYNNLKGSYPIERIQAFYTAHNLESALRPHQLDPAHYASLLAFLHN 289 >gi|308062691|gb|ADO04579.1| dimethyladenosine transferase [Helicobacter pylori Cuz20] Length = 279 Score = 171 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 33/252 (13%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 ++++ + ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL Sbjct: 1 MRSLEALLMVVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRY 60 Query: 70 ARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 K E D ++ + + P LE+++ DAL F P +I+NLPY Sbjct: 61 PLKTY--EIDSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPY 112 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I TRL+ N + P L ++ QKEV + A+ + LSVLT AT++ Sbjct: 113 YIATRLVLNALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGDATLL 165 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFG 231 FD+ P F P PKV S+V I + E+L+ + F Sbjct: 166 FDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFS 225 Query: 232 KRRKTLRQSLKR 243 RKTL +LK+ Sbjct: 226 SPRKTLSNNLKK 237 >gi|288921307|ref|ZP_06415589.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f] gi|288347281|gb|EFC81576.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f] Length = 247 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 17/235 (7%) Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-----NRLEIIQDDALK 106 +E+G G G+LT L+ V V D L + ++ RL +++ D L+ Sbjct: 3 LEVGPGLGSLTLGLVAQAGAVVAVE-VDPLLAAALPETAAARLPAALAQRLHVVEADGLR 61 Query: 107 VDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 V +++P + ANLPYN+ LL + P ++ Q EV ER+TA Sbjct: 62 VRPADLPAELAAPTVLAANLPYNVAVPLLLGLLER---FPTIRRGLVMVQAEVAERLTAP 118 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLK 223 YG SV W A + + VF+P P V S ++ F P + Sbjct: 119 PGGRIYGVPSVKLAWYADARLAGAVPRPVFWPQPNVDSALVAFNRRPAPPGDDSARAEVF 178 Query: 224 KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273 + AF +RRK LR +L G E ++ AG++ R E L +E + R+ Sbjct: 179 ALVDAAFAQRRKMLRTALASWAGSAQRAEQIIRAAGVDPGARGETLDVEAYARVA 233 >gi|111225627|ref|YP_716421.1| dimethyladenosine transferase [Frankia alni ACN14a] gi|111153159|emb|CAJ64908.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) [Frankia alni ACN14a] Length = 274 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 16/243 (6%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN- 95 +++ + TV+EIG G G++T LL A V+ +E D L + Sbjct: 2 RRLVRLAEVGPDDTVLEIGPGLGSMTLGLLGT-AGAVVAVEVDPPLAAALPVTVAARLPA 60 Query: 96 ----RLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 RL ++ D L++ + +P + ANLPYNI LL + P Sbjct: 61 EAAARLHVVLADGLRLGPADLPAGVPAPDVLAANLPYNIAVPLLLGVLER---LPSLRRG 117 Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 ++ Q EV +R+TA S YG SV W ++ + VF+P P V S ++ F Sbjct: 118 LVMVQAEVADRLTAPPGSRVYGAPSVKLAWYARSRPAGGVPRPVFWPQPNVDSGLVAFTR 177 Query: 211 HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENL 264 P P L + AF +RRKTLR +L G L AG++ R E L Sbjct: 178 RTPPAPAELRAEVFAAVDAAFAQRRKTLRTALVPWAGSRDAATALAEAAGVDPGARGETL 237 Query: 265 SIE 267 +E Sbjct: 238 DVE 240 >gi|317011563|gb|ADU85310.1| dimethyladenosine transferase [Helicobacter pylori SouthAfrica7] Length = 271 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLRLLERYPLKTY--EI 59 Query: 79 DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D +++ + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRERLKKQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL +++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFGAKDSQN---ALSVLAHAIGNVSLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTPTLSFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|145611616|ref|XP_368993.2| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15] gi|145018882|gb|EDK03161.1| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15] Length = 364 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 98/239 (41%), Gaps = 42/239 (17%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 KK GQ+ L + I ++I + + TV+E+G G GNL+ +L A+K+I +E Sbjct: 40 FRFKKDYGQHILKNPGIAEEIVKKAYLRPTDTVLEVGPGTGNLSVKILER-AQKLIAVEL 98 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + L P +LE+I D +K D F +I+N PY I + L+F Sbjct: 99 DPRMGAELTKRVQGKPEQRKLEVILGDVIKADLPPF------DVLISNTPYQISSPLVFK 152 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 ++ P + L+FQ+E R+TA+ Y RL Sbjct: 153 MLALPNPP---RCMVLMFQREFSSRLTARPGEALYSRL---------------------- 187 Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 V S+V+ P E + + F ++ KTL S LG + +L A Sbjct: 188 ----VESSVVRIEPKLGRERPNVSWEEWDGMLRVCFNRKNKTLHASF--LGVKEVLAMA 240 >gi|242309135|ref|ZP_04808290.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489] gi|239524176|gb|EEQ64042.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489] Length = 242 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 38 KIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P 94 +I +S +IEIGAG G+LT LL LG + E D++ P LK+ + Sbjct: 4 QIVQSIPKEALDLELIEIGAGLGDLTNKLLGLG--NITAYEVDEELLPYLKERFKKALES 61 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 +LE+ D +++ P +I+NLPY I T L+ I P + ++ Sbjct: 62 KQLELKIGDVMEIWKGNSLR-DKPYFLISNLPYYIATLLVIKAIKD----PLCKGCVVMT 116 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 QKEV + A +N + LSVLT +A ++F++ P F P PKVTS V + Sbjct: 117 QKEVALKFCASENQSDFSALSVLTQSVGEAKLLFEVPPIAFVPQPKVTSAVFLIQKNQIL 176 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFC 270 LE+L+ + + +F RKT+ +L + + +L I N R + + Sbjct: 177 PSDFLEALEGLLKISFNAPRKTIFNNLSKNYSKQKVLEVLEDLQITPNKRPHEIDTATYH 236 Query: 271 RITNIL 276 R+ IL Sbjct: 237 RLLKIL 242 >gi|328699748|ref|XP_003241033.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Acyrthosiphon pisum] Length = 221 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 14/200 (7%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 S++ ++ YK+ K + QNFL++ ++ +I S+GS V E+G GPGN+T+ + Sbjct: 11 PLPSIRDLIKLYKLRAMKELSQNFLMEPRLISRIVRSAGSFKDCEVCEVGPGPGNITRSI 70 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------S 116 + +V++IEKD++F P L+ ++ P LE+I D + + E+ FN Sbjct: 71 IQNMPSRVLIIEKDKRFTPSLELLAESSPVPLELIFGDVMNFNLEQMFNEDNKMEWEDKC 130 Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 I +I NLP+N+ T L+ W+ A W +TL FQKEV ER+ A + Sbjct: 131 PQIHLIGNLPFNVSTPLIIRWLKAISERKSAWRYGRVRMTLTFQKEVAERMAAPIMTRER 190 Query: 172 GRLSVLTGWRTKATMMFDIS 191 RLSV+ + F+I Sbjct: 191 SRLSVMCQNWCRVEHKFNIP 210 >gi|308183524|ref|YP_003927651.1| dimethyladenosine transferase [Helicobacter pylori PeCan4] gi|308065709|gb|ADO07601.1| dimethyladenosine transferase [Helicobacter pylori PeCan4] Length = 271 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMVQKEVALKFCAKDSQN---ALSVLVHAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|21228641|ref|NP_634563.1| dimethyladenosine transferase [Methanosarcina mazei Go1] gi|20907141|gb|AAM32235.1| Dimethyladenosine transferase [Methanosarcina mazei Go1] Length = 209 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 25/217 (11%) Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +I +E D +L D N +EII DALKVDF +F ++++NLPY+I + Sbjct: 1 MIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSISSE 53 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 + F + ++ L++Q E R+ + Y RL++ T + A+++ + Sbjct: 54 ITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMKVPK 108 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLH 251 F P+P+V S VI IP P E+ + F +RRK LR ++ L +LL Sbjct: 109 GAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSSLLK 166 Query: 252 QAGIET----------NLRAENLSIEDFCRITNILTD 278 I+ N RAE+L+ E+ + N++ D Sbjct: 167 IPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 203 >gi|332674195|gb|AEE71012.1| dimethyladenosine transferase [Helicobacter pylori 83] Length = 271 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + ++EIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKVQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P+ F Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFCAKDSQN---ALSVLTQAIGNATLLFDVPPNAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|315585815|gb|ADU40196.1| dimethyladenosine transferase [Helicobacter pylori 35A] Length = 271 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFTLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|229083358|ref|ZP_04215712.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44] gi|228699951|gb|EEL52582.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44] Length = 185 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 14/179 (7%) Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F + ++ANLPY + T +LF + ++ QKEVG+R+ A+ + YG Sbjct: 9 FEEGQDVMVVANLPYYVTTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKDYG 65 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAF 230 LS+ + T+ + + VF P P V S VI + PI + ++ + +F Sbjct: 66 SLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRILKRPQPIVEVTDEKFFFEVVRASF 125 Query: 231 GKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +RRKTL +L E +L + GI+ R E LSIE+F ++N L ++ Sbjct: 126 AQRRKTLMNNLSNNLNGFPKDKELLERILTEVGIDPKRRGETLSIEEFAVLSNALVSHK 184 >gi|323445795|gb|EGB02231.1| hypothetical protein AURANDRAFT_35437 [Aureococcus anophagefferens] Length = 192 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 12/185 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 S + + K +GQNFL + I+ I E + +V+EIG G GNLT LL A+K+ Sbjct: 18 ASSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLAQ-AKKL 76 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 +E D++ + P +RLE++ D LKV F +ANLPYNI + Sbjct: 77 TCVEFDRRMVREVAKRVENDPRKHRLEMVHGDVLKVALPYF------DVCVANLPYNISS 130 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 LF ++ P + S ++FQ+E +R++A+ Y RLSV T K T + + Sbjct: 131 PFLFKLLAHR---PHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIKVG 187 Query: 192 PHVFF 196 + F Sbjct: 188 RNNFR 192 >gi|317014800|gb|ADU82236.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Helicobacter pylori Gambia94/24] Length = 271 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 123/280 (43%), Gaps = 43/280 (15%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVGALPPLNSLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSGLCEKMRARLRAEKKPFNLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEIIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272 LK+ + L T++RA ++D+ ++ Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--VKDYLKL 264 >gi|297380589|gb|ADI35476.1| dimethyladenosine transferase [Helicobacter pylori v225d] Length = 271 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVRFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|261840104|gb|ACX99869.1| dimethyladenosine transferase [Helicobacter pylori 52] Length = 271 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKTRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGSATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|217034556|ref|ZP_03439965.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10] gi|216942976|gb|EEC22459.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10] Length = 271 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|221062011|ref|XP_002262575.1| dimethyladenosine transferase [Plasmodium knowlesi strain H] gi|193811725|emb|CAQ42453.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain H] Length = 519 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 13/234 (5%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G +IE+G G G +++ L +K+ +E D + +L + I DD L++ Sbjct: 270 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVLSRTMPG----FDFIHDDVLQI 324 Query: 108 DFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 +++ + +I NLP+ I +++LF + + E + Q EVG+RI ++ Sbjct: 325 NYKDLSKSKGTKLTVIGNLPFYITSQILFCLLDYH---HYIEQAIVTIQYEVGQRIISKP 381 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 N +Y LS+L T ++F I F+P PKV + V+ I + + C L LK+I Sbjct: 382 NEKNYSILSILFNLYTNPYLLFKIPSSAFYPVPKVEAAVMKIIFKHSNLNCNLLFLKEIL 441 Query: 227 QEAFGKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 + +F +RRK L+ SLKRL E L +LR + L+ F +TN L Sbjct: 442 RHSFQQRRKKLKSSLKRLLAKYSTEGNLQLPSSFCDLRPQQLTPLQFVELTNFL 495 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI 49 L+T + + PK+ +GQN+L D NI++K+ + Sbjct: 140 LRTKIPSREFKPKRSLGQNYLKDENIIQKMISAIELDADE 179 >gi|262277389|ref|ZP_06055182.1| dimethyladenosine transferase [alpha proteobacterium HIMB114] gi|262224492|gb|EEY74951.1| dimethyladenosine transferase [alpha proteobacterium HIMB114] Length = 255 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 10/251 (3%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + KK GQNFL++ N+ ++I + + ++E+G+G LT ++ +K +E D Sbjct: 1 MAKKKFGQNFLINKNLCEEILKYEKINNN-NILEVGSGNLALTTKIINKNPKKFFSLEID 59 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 K+ I + DAL ++ FN II+NLP+NI ++LL W+ Sbjct: 60 DDLIEKHKNSLISKY----IYKGDALNINELDLFN-KDKFSIISNLPFNISSKLLIKWLR 114 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 +S+TL+FQKE+ +RI A++N YGR++VL + + +++ F+P P Sbjct: 115 LQNDYKCIQSMTLMFQKELADRILAKENEKKYGRITVLVNAFFALSKIVEVNKKDFYPRP 174 Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 KV +TVI F + + L+KIT F +RRK +K++ + + + ++ Sbjct: 175 KVDATVIKFSSLKKNKIKKENFQKLEKITFSFFNERRKKNINKIKKIFSKEQIRKEELDK 234 Query: 258 --NLRAENLSI 266 +LR ENL+ Sbjct: 235 YFSLRPENLNP 245 >gi|317010201|gb|ADU80781.1| dimethyladenosine transferase [Helicobacter pylori India7] Length = 271 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLVQVLFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|15612387|ref|NP_224040.1| dimethyladenosine transferase [Helicobacter pylori J99] gi|27151619|sp|Q9ZJI7|RSMA_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|4155935|gb|AAD06902.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99] Length = 271 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 43/280 (15%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL+D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSNLCEKMRARLRAEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272 LK+ + L T++RA ++D+ ++ Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--VKDYLKL 264 >gi|317182633|dbj|BAJ60417.1| dimethyladenosine transferase [Helicobacter pylori F57] Length = 271 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + ++EIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|189910634|ref|YP_001962189.1| dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775310|gb|ABZ93611.1| Dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 292 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 37/294 (12%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL--DGITVI-EIGAGPGNLTQM 64 +++ I +K GQNFL+D NI++ I + L +G + EIG G G LT Sbjct: 9 SQIQSFFEEKGIRAQKKFGQNFLIDQNIVEYIVNVAKPLFSEGDVTLAEIGIGLGTLTYP 68 Query: 65 LLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRII 122 +L L ++ + E D + + K +I + P+ + + DAL E F+I + + Sbjct: 69 ILCLE-KETDLFEIDHAYIQLAKDEILPKFPHAI-LHAGDAL----ENLFHIYPKKVFVF 122 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPY++ T ++ I ++ + QKE ER+ LSV Sbjct: 123 GNLPYHLTTEIINTLIINCRH---FQGGIFMVQKEFAERLV-----KETSSLSVFLSAFC 174 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--------NPIPCCLESLKKITQEAFGKRR 234 + + + + FFP PK+ S ++ P +E ++ + F +R Sbjct: 175 EIKFLKTVHKNCFFPIPKIHSALLLLTPKQKVGNNQWSPQSNEGVEIWSRMLRTLFWGKR 234 Query: 235 KTLRQSLKRLGGEN----------LLHQAGIETNLRAENLSIEDFCRITNILTD 278 K ++ SL+ N L ++ I R E L+ E F + L D Sbjct: 235 KQIQVSLRESPFSNDPMFRDALGEALLRSQIPPTKRPEELNREQFLNLGQHLLD 288 >gi|188528194|ref|YP_001910881.1| dimethyladenosine transferase [Helicobacter pylori Shi470] gi|226732587|sp|B2UVG9|RSMA_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|188144434|gb|ACD48851.1| dimethyladenosine transferase [Helicobacter pylori Shi470] gi|308064183|gb|ADO06070.1| dimethyladenosine transferase [Helicobacter pylori Sat464] Length = 271 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDHYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|261838704|gb|ACX98470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori 51] Length = 271 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGSATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|108563781|ref|YP_628097.1| dimethyladenosine transferase [Helicobacter pylori HPAG1] gi|118600871|sp|Q1CRJ9|RSMA_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|107837554|gb|ABF85423.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori HPAG1] Length = 271 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I ++ L+ + ++EIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKVQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHAIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|34556519|ref|NP_906334.1| dimethyladenosine transferase [Wolinella succinogenes DSM 1740] gi|34482233|emb|CAE09234.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE 16S RRNA DIMETHYLASEEC 2.1.1 [Wolinella succinogenes] Length = 239 Score = 168 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 15/232 (6%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVD 108 V+E+G G G+LT LL G V+ E D P L+ + R EI D ++ Sbjct: 3 VVEVGPGLGDLTNKLL--GFWDVLAFEVDTDLRPHLEKRFQKELSIGRFEIRFGDVMEEW 60 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 EK I P +++NLPY + T ++ + P SL ++ QKEV E+ A+ Sbjct: 61 REKRSLIPRPYVLVSNLPYYVATAIILKALKD----PMCHSLVVMVQKEVAEKFCARSGE 116 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228 + LSV+T ++ ++F++ P F P+PKVTS V + H E L+++ + Sbjct: 117 SDFSALSVITESYGESELLFEVPPQAFEPAPKVTSAVFRVVKH---HGEVAEGLEELLRL 173 Query: 229 AFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNIL 276 AF RK + ++L + L +A ++ RA L + R+ IL Sbjct: 174 AFSAPRKKVLKNLASGYETSRLKEAFGALNLKEEARAHELETSHYHRLLKIL 225 >gi|317178134|dbj|BAJ55923.1| dimethyladenosine transferase [Helicobacter pylori F16] Length = 271 Score = 168 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQVIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|222622078|gb|EEE56210.1| hypothetical protein OsJ_05183 [Oryza sativa Japonica Group] Length = 314 Score = 168 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 40/256 (15%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 59 STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLD 118 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSP 118 GA V +EKD+ ++ D +L+II++D K + F + Sbjct: 119 AGA-TVFAVEKDKHMATLVNDRFGST-EQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKY 176 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177 ++++NLP+N+ T ++ + + + LL Q E R A +P Y ++V Sbjct: 177 AKVVSNLPFNVSTEVVKLLL---PMGDVFSVMVLLLQDETALRFADASIQTPEYRPINVF 233 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + ++ F + FFP PKV S AF +RK L Sbjct: 234 VNFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKML 268 Query: 238 RQSLKRLGGENLLHQA 253 R+SL+ L + + A Sbjct: 269 RKSLQHLCSSSEIEAA 284 >gi|254779942|ref|YP_003058049.1| dimethyladenosine transferase [Helicobacter pylori B38] gi|254001855|emb|CAX30105.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Helicobacter pylori B38] Length = 271 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 125/284 (44%), Gaps = 43/284 (15%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSNLCEKMRSKLKAQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 LK+ + L T++RA I+D ++ L Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--IKDHLKLLEYL 268 >gi|217032121|ref|ZP_03437621.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128] gi|298735609|ref|YP_003728134.1| dimethyladenosine transferase [Helicobacter pylori B8] gi|216946269|gb|EEC24877.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128] gi|298354798|emb|CBI65670.1| dimethyladenosine transferase [Helicobacter pylori B8] Length = 271 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|156095981|ref|XP_001614025.1| dimethyladenosine transferase [Plasmodium vivax SaI-1] gi|148802899|gb|EDL44298.1| dimethyladenosine transferase, putative [Plasmodium vivax] Length = 522 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 13/234 (5%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G +IE+G G G +++ L +K+ +E D + +L + I DD L++ Sbjct: 273 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVLSRTMPG----FDFIHDDVLQI 327 Query: 108 DFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 +++ + + +I NLP+ I +++LF + + E + Q EVG+RI ++ Sbjct: 328 NYKDLSESKATKLTVIGNLPFYITSQILFCLLDYH---HYIEQAIVTIQYEVGQRIVSKV 384 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 N Y LS+L T ++F I F+P PKV + V+ I + + C L LK+I Sbjct: 385 NEKSYSILSILFNLYTSPYLLFKIPSSAFYPVPKVEAAVMKIIFKQSSLNCNLLFLKEIL 444 Query: 227 QEAFGKRRKTLRQSLKRLGGE-NLLHQAGIETN---LRAENLSIEDFCRITNIL 276 + +F +RRK L+ SLK L + + + + + LR + L+ F +TN L Sbjct: 445 RHSFQQRRKKLKSSLKPLLAKYSTTKELQLPPSVCHLRPQQLTPPQFVELTNFL 498 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDG 48 L+T + + PK+ +GQN+L D NI++K+ + Sbjct: 141 LRTKIPSREFKPKRSLGQNYLKDENIIQKMVSAIELGAD 179 >gi|86742643|ref|YP_483043.1| dimethyladenosine transferase [Frankia sp. CcI3] gi|86569505|gb|ABD13314.1| dimethyladenosine transferase [Frankia sp. CcI3] Length = 251 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 101/240 (42%), Gaps = 16/240 (6%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-----KDISSQH 93 + +G TV+EIG G G++T L+ V V D+ L + + Sbjct: 1 MVRLAGVGPDDTVLEIGPGLGSMTLGLVEAAKAVVAVE-VDRPLAAALPVTVAARLPADV 59 Query: 94 PNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 RL ++ D L+V ++++P + ANLPYNI LL P + Sbjct: 60 AERLRVVAADGLRVTLADLPADVAAPGVLAANLPYNIAVPLLL---GLLERLPSLRRGLV 116 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + Q EV +R+TA S YG SV W A + VF+P P V S ++ F Sbjct: 117 MVQAEVADRLTAPPGSRVYGAPSVKLAWYAHARPAGAVPRPVFWPQPNVDSGLVAFARRP 176 Query: 213 NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSI 266 P P L + + AF +RRKTLR +L G +L A ++ R E L I Sbjct: 177 LPGPARLRADVFAAIDAAFAQRRKTLRTALAPWAGSPAAAGDLARAAEVDPGARGETLDI 236 >gi|308185189|ref|YP_003929322.1| dimethyladenosine transferase [Helicobacter pylori SJM180] gi|308061109|gb|ADO03005.1| dimethyladenosine transferase [Helicobacter pylori SJM180] Length = 279 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 33/252 (13%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 +++ + ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL Sbjct: 1 MRSFEALLMVVAKKSLGQHFLTDESFLDRIINALPPLNSLRLIEIGVGLGDLTLKLLDRY 60 Query: 70 ARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 K E D ++ + + P +LE+++ DAL F P +I+NLPY Sbjct: 61 PLKTY--EIDSSLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPY 112 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 I TRL+ N + P L ++ QKEV + A+ + LSVL AT++ Sbjct: 113 YIATRLVLNALKD----PKCRGLLVMTQKEVALKFCAKGSQN---ALSVLAHTIGDATLL 165 Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFG 231 FD+ P F PSPKV S+V I + E+L+ + F Sbjct: 166 FDVPPSAFSPSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFS 225 Query: 232 KRRKTLRQSLKR 243 RKTL +LK+ Sbjct: 226 SPRKTLSNNLKK 237 >gi|317013195|gb|ADU83803.1| dimethyladenosine transferase [Helicobacter pylori Lithuania75] Length = 271 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL N Sbjct: 60 DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLALN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|48477458|ref|YP_023164.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790] gi|48430106|gb|AAT42971.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790] Length = 239 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 27/258 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + + GQ FL +LNI K G V+EIG G G LT +++ + V+E Sbjct: 1 MKFSRKYGQVFLKNLNIAKIEVNLLNLSPGERVLEIGPGHGILTSIIMEKNVN-LTVVEP 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D +F+ +I + P L I++ L + N + +II N+PYNI ++++F Sbjct: 60 DHRFY---NEIILRFPG-LNAIKNSFLDL------NPGAYDKIIGNIPYNISSQIIFKLY 109 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 D ++ L+ Q+E ER+ A + +Y RLS + R + D+S F+P Sbjct: 110 DFD-----FKLALLMVQREFAERLVASPGNKNYSRLSASSKLRFDIKKVMDVSRKNFYPV 164 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 P+V S++I + IPC + I + AF +RK + K G Sbjct: 165 PEVDSSIIIIKKNNKKIPCNPDD---IIKMAFSMKRKKISSIFKNYDGPL--------KY 213 Query: 259 LRAENLSIEDFCRITNIL 276 R +LS EDF + L Sbjct: 214 KRPGDLSPEDFIDLCCYL 231 >gi|296241774|ref|YP_003649261.1| ribosomal RNA adenine methylase transferase [Thermosphaera aggregans DSM 11486] gi|296094358|gb|ADG90309.1| ribosomal RNA adenine methylase transferase [Thermosphaera aggregans DSM 11486] Length = 249 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 21/267 (7%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + I P K + QNF+++ ++ I IEIG G G LT L+ R + Sbjct: 1 MKRNGIRPSKKLSQNFVVNPRLITSI---LSLTSNEDTIEIGCGIGTLTIFLVNR-VRSL 56 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 IE D++ I+ +I R ++ DAL + P ++++NLPY+I + + Sbjct: 57 ACIEYDERMIKIVSNIVR--SPRFIPVKGDALTT------GVGRP-QVVSNLPYHITSDI 107 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L ++ L QKEVGER+ A+ + YGRL+V+ + P Sbjct: 108 LIMIARDNS----ISKAVLTLQKEVGERLVAKAGTESYGRLTVIAQLLFNIRITGVYPPS 163 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR--LGGENLLH 251 F P PKV S+++ + +E ++ +T+ F +RR+ R+ + +L Sbjct: 164 SFIPRPKVESSLVLLE-RIRDYDKVVEKVEHVTRALFSQRRRNARRVAESRLNISTEVLT 222 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 + I ++ R L E F + L + Sbjct: 223 RI-IPSDKRVFELEPEVFLALAEELAN 248 >gi|317181111|dbj|BAJ58897.1| dimethyladenosine transferase [Helicobacter pylori F32] Length = 271 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSNLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|307638086|gb|ADN80536.1| Dimethyl adenosine transferase [Helicobacter pylori 908] gi|325996687|gb|ADZ52092.1| Dimethyladenosine transferase [Helicobacter pylori 2018] gi|325998279|gb|ADZ50487.1| Dimethyladenosine transferase [Helicobacter pylori 2017] Length = 271 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 81/280 (28%), Positives = 126/280 (45%), Gaps = 43/280 (15%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVGALSPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSHLCEKMRARLKAEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 PSPKV S+V I + E+L+ + F RKTL + Sbjct: 167 PSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272 LK+ + L T++RA I+D+ ++ Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--IKDYLKL 264 >gi|221120384|ref|XP_002166686.1| PREDICTED: similar to Probable dimethyladenosine transferase [Hydra magnipapillata] Length = 298 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 51/249 (20%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 K + T + I K GQ+ L + I+ I + + TV+E+G G GN++ + Sbjct: 8 KKTRVHTQVKTEGIQFKHEFGQHILKNPLIVNAIIDKAAIKSTDTVLEVGPGTGNMSVKI 67 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L A+K+I E D + ++ P N+L +I D LK + F +A Sbjct: 68 LE-KAKKLIACELDPRMASEIQKRVQGSPEANKLHLIVGDVLKSELPYF------DCCVA 120 Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 NLPY I + +F + PF+ Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFR----------------------------------- 142 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 F + + F P PKV S+V+ P P P + + + AF ++ KTL Sbjct: 143 ----FLVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAACFSS 198 Query: 244 LGGENLLHQ 252 ++L + Sbjct: 199 KAVIDMLEK 207 >gi|210135592|ref|YP_002302031.1| dimethyladenosine transferase [Helicobacter pylori P12] gi|226732585|sp|B6JNS3|RSMA_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|210133560|gb|ACJ08551.1| 16S rRNA (adenosine-n6,n6)-dimethyltransferase [Helicobacter pylori P12] Length = 271 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + + + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQN---ALSVLVHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|15646040|ref|NP_208222.1| dimethyladenosine transferase [Helicobacter pylori 26695] gi|27151553|sp|O25972|RSMA_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|2314603|gb|AAD08470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase (ksgA) [Helicobacter pylori 26695] Length = 271 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + ++EIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSHLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P L ++ QKEV + A+ + LSVL AT++FD+ P F Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFEMLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|229170892|ref|ZP_04298495.1| Dimethyladenosine transferase [Bacillus cereus MM3] gi|228612558|gb|EEK69777.1| Dimethyladenosine transferase [Bacillus cereus MM3] Length = 183 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 14/183 (7%) Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 F + F + ++ANLPY I T +LF + ++ QKEVG+R+ A+ + Sbjct: 2 FSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGT 58 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKIT 226 YG LS+ + T+ + + VF P P V S +I + P+ + ++ Sbjct: 59 KEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVV 118 Query: 227 QEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + +F +RRKTL +L + +L + GI+ R E LSIE+F ++N L Sbjct: 119 RASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 178 Query: 278 DNQ 280 ++ Sbjct: 179 LHK 181 >gi|317179606|dbj|BAJ57394.1| dimethyladenosine transferase [Helicobacter pylori F30] Length = 271 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + + + LSVLT AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCTKDSQN---ALSVLTQAIGSATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group] Length = 603 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 40/256 (15%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 59 STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLD 118 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSP 118 GA V +EKD+ ++ D +L+II++D K + F + Sbjct: 119 AGA-TVFAVEKDKHMATLVNDRFGST-EQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKY 176 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177 ++++NLP+N+ T ++ + + + LL Q E R A +P Y ++V Sbjct: 177 AKVVSNLPFNVSTEVVKLLL---PMGDVFSVMVLLLQDETALRFADASIQTPEYRPINVF 233 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237 + ++ F + FFP PKV S AF +RK L Sbjct: 234 VNFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKML 268 Query: 238 RQSLKRLGGENLLHQA 253 R+SL+ L + + A Sbjct: 269 RKSLQHLCSSSEIEAA 284 >gi|156539746|ref|XP_001600767.1| PREDICTED: similar to dimethyladenosine transferase [Nasonia vitripennis] Length = 262 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 17/210 (8%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + +++ I+ Y++ K + QNFL++ + KI +S G + V+E+G GPG +T+ + Sbjct: 8 PTPTIRDIIKLYRLSAIKQLSQNFLMNEALTDKIVKSVGKIYNSQVLEVGPGPGGITRSI 67 Query: 66 LTLGARKVIVIEKDQQFFPIL---KDISSQHPNRLEIIQDDALKVDFEKFF--------- 113 L +K+IV+EKDQ+F PIL + I S + +I +D + ++ + F Sbjct: 68 LKKNPKKLIVVEKDQRFRPILDLMESIVSASDVDMTLIYNDIMSINTKDVFSFKDKKEWN 127 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168 + I I+ NLP++I T L+ W+ A + W +TL FQKEV ER+ A Sbjct: 128 DECPNIFIVGNLPFSISTALIIKWLHAISKQKEAWSHGRVRMTLTFQKEVAERLVADVMG 187 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 RLSV+ T + F I Sbjct: 188 NQRCRLSVMAQTWTLPKLQFIIPGKSQVKR 217 >gi|208435299|ref|YP_002266965.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori G27] gi|226732586|sp|B5Z950|RSMA_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|208433228|gb|ACI28099.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter pylori G27] Length = 271 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D ++ + + P +LE+++ DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSNLCEKMRARLKAQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + P L ++ QKEV + + + LSVL AT++FD+ P F Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQN---ALSVLVHTIGNATLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 P PKV S+V I + E+L+ + F RKTL + Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|305663450|ref|YP_003859738.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans DSM 17230] gi|304378019|gb|ADM27858.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans DSM 17230] Length = 288 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 128/282 (45%), Gaps = 23/282 (8%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQML 65 ++ L Y I KK + Q LL+ L+KIA +VIEIG+GPG LT + Sbjct: 16 VREKLRVYGIKLKKRLSQVILLNEKTLEKIARMLKELSIIHRFSSVIEIGSGPGTLTLYV 75 Query: 66 LTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 +I IE D++F IL++I N ++II DA+ + ++ I N Sbjct: 76 AKECTNLYIIAIEIDKRFSAILREIQEYFWN-VDIIIGDAI-----QLIDVIRSNVAIGN 129 Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 LPY+I + +L + + QK+VG +I ++ S YG++S+L Sbjct: 130 LPYHITSDILIEI------AKHIDIALITVQKDVGMKIISKPGSKSYGKISILLQLLFDI 183 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 + I F P PKV S+++ + +E ++++T+ F RRK + ++LKR Sbjct: 184 KYVGGIPSKFFRPKPKVDSSIL-LLVRKRIYDKTIERIEEMTKCLFSYRRKHVYKALKRC 242 Query: 245 ----GGENLLHQAGIETNL-RAENLSIEDFCRITNILTDNQD 281 + +L R LS +D ++ +I + ++ Sbjct: 243 IDLEYVDKMLSYMEQNLWRKRVFQLSPKDIEKLVHIYVELKN 284 >gi|18390036|gb|AAL68827.1|AF462611_2 23S ribosomal RNA methyltransferase ErmML [Micrococcus luteus] Length = 281 Score = 164 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 108/262 (41%), Gaps = 24/262 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D + +++ G G ++EIG G G LT+ L LG R + +E D + Sbjct: 8 RHEHGQNFLTDHTTIDRLSRLVGDSTG-PIVEIGPGQGRLTRELQKLG-RSLTAVEIDSR 65 Query: 82 FFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L S + + ++ D L ++P ++ N+P+++ T +L + Sbjct: 66 LADRLASASQFREQKHVTVVNADFLHWPLP-----TTPYVVVGNVPFHLTTAILRRLLHD 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 W + LL Q EV R S ++ ++ + F P+P Sbjct: 121 GAW----TQVVLLVQWEVARRRAGIGGS---SMMTAQWWPWIDFSLHGRVPRSAFKPAPS 173 Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ-------SLKRLGGENLLH 251 V ++ +P+ P ES ++ + F R + + + SL + G LL Sbjct: 174 VDGGLLEMTRRPDPLLSPDARESYRQFVHDVFTSRGRGIGEILANVSSSLGKRGALQLLK 233 Query: 252 QAGIETNLRAENLSIEDFCRIT 273 GI ++ ++LS E + R+ Sbjct: 234 SEGIRSSSLPKDLSAEQWARLF 255 >gi|331087257|ref|ZP_08336327.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408943|gb|EGG88404.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 211 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 9/159 (5%) Query: 2 TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 T+ N +++ +L Y +K GQNFL+D ++L KI S+ V+EIG G G + Sbjct: 5 TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118 TQ L AR+V+ +E D+ PIL+D S + N + +I +D LK+D K N P Sbjct: 64 TQYLAC-AAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157 I+++ANLPY I T ++ + +S+T++ QK Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---VQSITVMVQKR 157 >gi|581699|emb|CAA55770.1| lmrB [Streptomyces lincolnensis] gi|159796252|gb|ABX00620.1| LmrB [Streptomyces lincolnensis] Length = 279 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 23/257 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL+D +I+K I ++ +G ++++GAG G LT L LG R V +E D + Sbjct: 8 RQELGQNFLVDPDIIKLIRRAAERTEG-PIVDLGAGDGALTLPLSRLG-RPVTAVELDPR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K +S++ P ++++ +D L+ P ++ N+P+++ T + + A Sbjct: 66 ---RVKRLSARAPENVKVVGEDILRFRLPTV-----PHTVVGNIPFHVTTATMRRILVA- 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W S L+ Q EV R ++ + +++ + F P+P V Sbjct: 117 ---PAWVSAVLVVQWEVARRRAGIGGC---SLVTAESWPWFDFSVLKRVPRFAFRPAPSV 170 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255 ++ P+ + ++ F R LR+ L+R+G G+ Sbjct: 171 DGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIGRVQDSDLSAWFRAHGV 230 Query: 256 ETNLRAENLSIEDFCRI 272 ++L+ E + + Sbjct: 231 SPQALPKDLTAEQWASL 247 >gi|3800832|gb|AAC69327.1| rRNA methyltransferase PikR2 [Streptomyces venezuelae] Length = 322 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 23/260 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL+D +++ +I G ++EIG G G LT L G R + +E D + Sbjct: 9 RHELGQNFLVDRSVIDEIDGLVARTKG-PILEIGPGDGALTLPLSRHG-RPITAVELDGR 66 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ P + ++ D L+ + +P ++ N+P+++ T ++ + A Sbjct: 67 RAQRL---GARTPGHVTVVHHDFLQYPLPR-----NPHVVVGNVPFHLTTAIMRRLLDAQ 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 W + LL Q EV R S L+ + + + F P P V Sbjct: 119 ----HWHTAVLLVQWEVARRRAGVGGSTL---LTAGWAPWYEFDLHSRVPARAFRPMPGV 171 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255 V+ P+ +++ + ++ F + L++ L+R G L + I Sbjct: 172 DGGVLAIRRRSAPLVGQVKTYQDFVRQVFTGKGNGLKEILRRTGRISQRDLATWLRRNEI 231 Query: 256 ETNLRAENLSIEDFCRITNI 275 + ++L + + + Sbjct: 232 SPHALPKDLKPGQWASLWEL 251 >gi|167470555|ref|ZP_02335259.1| dimethyladenosine transferase [Yersinia pestis FV-1] Length = 160 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 14/172 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + + G V+EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + + + VIE D+ L Q ++L I Q DA+KV+F + P+R+ Sbjct: 53 EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFSELSEQAGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173 NLPYNI T L+F+ S + + + QKEV R+ A NS YGR Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVRRLVAGPNSKTYGR 159 >gi|73487002|gb|AAZ76618.1| Erm(38)go [Mycobacterium goodii] Length = 377 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 100/267 (37%), Gaps = 29/267 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+ + +GQNFL D ++ I E G +IEIGAG G LT L L R + Sbjct: 5 HHG---RHELGQNFLSDRRVIADIVEIVSHTTG-PIIEIGAGDGALTVPLQGL-VRPLTA 59 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D + L +++ EI+ D L+ SP ++ NLP+++ T +L Sbjct: 60 IEVDARRAHRLAQRTAKST---EIVVADFLRHPLP-----HSPHVVVGNLPFHLTTAILR 111 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF--DISPH 193 + P W + L+ Q EV R A + + W I Sbjct: 112 RLL----HGPGWTTAVLVVQWEVARRRAAVGGATM-----MTAQWWPWFEFALAQKIPAS 162 Query: 194 VFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG---GEN 248 F P P V + ++ P+ + + F R + + Q L+RL N Sbjct: 163 SFRPRPAVDAGLLTITRRNRPLVDSADRARYQALVHRVFTGRGRGMAQILRRLPTPVPRN 222 Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275 L G+ N LS + + Sbjct: 223 WLRANGVAPNALPRQLSAAQWAALHEA 249 >gi|224750|prf||1112175A transferase,N-Me Length = 370 Score = 161 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 40/271 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S HPN +E++ D L + P + +PY I + ++ + A Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIPYGITSAIVDWCLEA- 147 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P E+ T++ Q E + T + RL+V+T + + KV Sbjct: 148 ---PTIETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFV-----------EKV 191 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN- 258 S ++ P+ LE + + + F ++ SL R + A Sbjct: 192 DSAIMRLRRRAEPLLEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAAFDHAGV 251 Query: 259 --------LRAENLSIEDFCRITNILTDNQD 281 +R E + R+ L + Sbjct: 252 GGGAVVAYVRPE-----QWLRLFERLDQKNE 277 >gi|109946738|ref|YP_663966.1| dimethyladenosine transferase [Helicobacter acinonychis str. Sheeba] gi|122973457|sp|Q17ZF9|RSMA_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|109713959|emb|CAJ98967.1| dimethyladenosine transferase [Helicobacter acinonychis str. Sheeba] Length = 271 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 108/243 (44%), Gaps = 33/243 (13%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D +++ + P LE+ + DAL F P +I+NLPY I TRL+ N Sbjct: 60 DSSLCEKMRERLKKQKKPFELELAEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 P L ++ QKEV + + + LSVL T++FD+ P F Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCTKDSQN---ALSVLAHAIGNVTLLFDVPPSAFS 166 Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240 PSPKV S++ I + E+L+ + F RKTL + Sbjct: 167 PSPKVFSSMFEVIKEPLKEKALASLIPTLSFEEALQKGFETLEDFLKACFSSPRKTLSNN 226 Query: 241 LKR 243 LK+ Sbjct: 227 LKK 229 >gi|30698221|ref|NP_201437.2| ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|21539437|gb|AAM53271.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana] gi|31711838|gb|AAP68275.1| At5g66360 [Arabidopsis thaliana] gi|332010820|gb|AED98203.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] Length = 352 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 97/241 (40%), Gaps = 40/241 (16%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 H + K GQ+ L + IL I SS TV+EIG G GNLT LL A+ V+ Sbjct: 57 EHDGLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVV 115 Query: 75 VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 +E D++ IL+ S H ++L IIQ D LK DF F ++AN+PYNI + Sbjct: 116 AVELDKRMVEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSP 169 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+ + + S TLL QKE R+ A + RL+V Sbjct: 170 LVAKLVYGSN---TFRSATLLLQKEFSRRLLANPGDSDFNRLAVN--------------- 211 Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 + P ++ T+ FGK+ KTL ++ L Sbjct: 212 -------------VKITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQKKKVMELQS 258 Query: 253 A 253 Sbjct: 259 L 259 >gi|168702403|ref|ZP_02734680.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246] Length = 261 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 19/240 (7%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L + + + PK +GQNFL+DLN+L I ++ V+E+G G G+LT L Sbjct: 26 LHRLFEAHGLSPKSKLGQNFLIDLNLLDLIVRTAELDKSDAVLEVGTGTGSLTAKLAD-P 84 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL------------KVDFEKFFNISS 117 A V+ +E D+ P+ K+I N + + DAL D + Sbjct: 85 AGVVVTVEVDRSIQPVAKEIVGGRSN-VRFVFGDALAKKSELNPDMLSTWDAAAKEVGCT 143 Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 +++ANLPY I T L+ N + P E + ++ Q E+ ER+ A N+ Y LSVL Sbjct: 144 RKKLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVL 200 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235 + ++P F P PKV S ++ P+ + + ++ + RRK Sbjct: 201 VQSVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRK 260 >gi|116328998|ref|YP_798718.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121742|gb|ABJ79785.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 301 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 73/299 (24%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLT 62 K ++ L P K GQNFL+D N ++ I ++EIG G G ++ Sbjct: 10 KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + V + E D + L++ + EI + +AL E N + + Sbjct: 70 HGLLDFQ-KPVTLFEIDPVYAHWLREYLPE----FEIREGNALDFLHEYSQNST---YLF 121 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPY I + L +S+ + L QKE +RI+++ +S + LS W Sbjct: 122 GNLPYYISSELT---LSSVKNLKELKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNW-- 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 ++ D+ F+P P V S+++ + P + +L+ + + AF +RK L S Sbjct: 176 --SLKKDVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232 Query: 241 LKRLGGENL----------------------LHQAGIETNLRAENLSIEDFCRITNILT 277 L+ +L L AGI+ N R E L DF L+ Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFHEAAQSLS 291 >gi|16082608|ref|NP_394755.1| rRNA dimethyladenosine transferase [Thermoplasma acidophilum DSM 1728] Length = 239 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 28/262 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K MGQ FL I + + G + TV+EIG G G LT++L+ G K+ +EKD+ Sbjct: 4 SKRMGQVFLQSRRIAEYEVDLLG--EPGTVLEIGPGHGVLTKILVERG-FKITAVEKDRY 60 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 F L+ + + L +I D L + S II N+PY+I + ++F + Sbjct: 61 IFGELQSLRAA---NLNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEFE 111 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + ++ QKE E+I RL V R + +S F P P+V Sbjct: 112 -----FRRSVIMVQKEFAEKIAFP---DDMSRLYVNAHVRYNVELKRYVSRKNFNPQPEV 163 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S ++ P LE L + + F K+RK L + E+L + R Sbjct: 164 DSAILVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKLSNIF-DICPEDL-------ADKRP 215 Query: 262 ENLSIEDFCRITNILTDNQDIA 283 NL++ + + +L D+ A Sbjct: 216 SNLTVSEILGLARLLFDSGSSA 237 >gi|73993434|ref|XP_535250.2| PREDICTED: similar to Probable dimethyladenosine transferase (S-adenosylmethionine-6-N,N-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) (HUSSY-05) [Canis familiaris] Length = 201 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 12/186 (6%) Query: 11 KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 + + S + +GQ+ L + ++ I + + V+E+G G GN+T LL Sbjct: 20 RELKSAGGLTFNTGIGQHILKNPLVVNSIIDKAALGPTDVVLEVGPGTGNMTVELLE-KV 78 Query: 71 RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +KVI E D + P ++L+++ D LK D F +ANLPY Sbjct: 79 KKVIARELDPRLVAEPHKRVQGTPLASKLQVLVGDVLKTDLPFF------DACVANLPYQ 132 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I + +F + PF+ L+FQ+E R+ A Y RLS+ + + Sbjct: 133 ISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAMPGDKLYCRLSINIQLLARVDHLM 189 Query: 189 DISPHV 194 + + Sbjct: 190 KVGKNN 195 >gi|115630|sp|P13079|CARB_STRTH RecName: Full=rRNA methyltransferase; AltName: Full=Carbomycin-resistance protein gi|99022|pir||A26512 carB protein - Streptomyces sp gi|153200|gb|AAC32026.1| carbomycin resistance protein [Streptomyces thermotolerans] Length = 299 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 23/263 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL+D +++ + G V+E+GAG G +T+ L L R+V+ E D+ Sbjct: 49 RRVHGQNFLVDRETVQRFVRFADPDPGEVVLEVGAGNGAITRELARLC-RRVVAYEIDRH 107 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 F L++ +++ P R+E++ D LK K P ++ N+P+ ++ ++A Sbjct: 108 FADRLREATAEDP-RIEVVAGDFLKTSQPKV-----PFSVVGNIPFGNTADIVDWCLNAR 161 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + TL+ Q E + T + RL+V T + M IS F P P V Sbjct: 162 R----LRTTTLVTQLEYARKRTG--GYRRWSRLTVATWPEVEWRMGERISRRWFRPVPAV 215 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 S V+ P P + + + + F + +L SL+R + AG Sbjct: 216 DSAVLRLERRPVPLIPPGLMHDFRDLVETGFTGKGGSLDASLRRRFPARRV-AAGFR-RA 273 Query: 260 RAEN------LSIEDFCRITNIL 276 R E ++ + + L Sbjct: 274 RLEQGVVVAYVTPGQWITLFEEL 296 >gi|116330394|ref|YP_800112.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124083|gb|ABJ75354.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 301 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 73/299 (24%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLT 62 K ++ L P K GQNFL+D N ++ I ++EIG G G ++ Sbjct: 10 KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + V + E D + L++ + EI + +AL E N + + Sbjct: 70 HGLLDFQ-KPVTLFEIDPVYAHWLREYLPE----FEIREGNALDFLHEYSQNST---YLF 121 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPY I + L +S+ + L QKE +RI+++ +S + LS W Sbjct: 122 GNLPYYISSELT---LSSVKNLKELKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNW-- 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 ++ D+ F+P P V S+++ + P + +L+ + + AF +RK L S Sbjct: 176 --SLKKDVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232 Query: 241 LKRLGGENL----------------------LHQAGIETNLRAENLSIEDFCRITNILT 277 L+ +L L AGI+ N R E L DF L+ Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFYEAAQSLS 291 >gi|119558|sp|P09891|ERMA_ARTS3 RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|80586|pir||A24026 erythromycin resistance protein - Arthrobacter sp gi|142204|gb|AAA22075.1| erythromycin resistance (ermA) protein [Arthrobacter sp.] gi|53794569|gb|AAU93796.1| ribosomal RNA methyltransferase [Aeromicrobium erythreum] Length = 340 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 112/269 (41%), Gaps = 20/269 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL D +++IA+++ V+E G G G LT+ L A +V E DQ+ Sbjct: 32 RRVLGQNFLRDPATIRRIADAADVDPDGLVVEAGPGEGLLTRELARR-AGRVRTYELDQR 90 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +Q + +E++ D L + P + + +PY I + ++ ++A Sbjct: 91 LARRLSTDLAQETS-IEVVHADFLTAPHPE-----EPFQFVGAIPYGITSAIVDWCLTA- 143 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P S TL+ Q+E + T + L+V T + + + +F P P+V Sbjct: 144 ---PTLTSATLVTQQEFARKRTGDYG--RWTALTVTTWPTFEWQYVAKVDRTLFTPVPRV 198 Query: 202 TSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLHQAG 254 S ++ P+ + + F + +L +SL R ++ +A Sbjct: 199 HSAIMRLRRRPQPLLRDAAARSRFADMVEIGFVGKGGSLYRSLTREWPRSKVDSAFARAD 258 Query: 255 IETNLRAENLSIEDFCRITNILTDNQDIA 283 + + + + + + +L ++ A Sbjct: 259 VHHDEIVAFVHPDQWITLFQLLDGSRGGA 287 >gi|218884716|ref|YP_002429098.1| Probable dimethyladenosine transferase [Desulfurococcus kamchatkensis 1221n] gi|218766332|gb|ACL11731.1| Probable dimethyladenosine transferase [Desulfurococcus kamchatkensis 1221n] Length = 278 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 +IL + + P++ + QNF++D +++ + EIG G G LT L + R Sbjct: 21 SILREHGLRPRRKLSQNFIVDPRLIRDFISHVNHAETT---EIGCGLGTLTIPLSRVVPR 77 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 +I IE D++ I + I DA K +++ N+PY++ + Sbjct: 78 -LICIEIDEKLLGIAVKNLNTSNTLF--INADATKYTVFS-------RQVVGNIPYHVTS 127 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 +L + ++ E + QK+V ER+ A+ S YGR+++L + Sbjct: 128 NILVSIARSNN----VERVVFTLQKDVAERLVAKPGSKQYGRITILLNTLFNIEITGIYG 183 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----- 246 P F+P PKV +I + +L+K+T+ F +RR+ + L + G Sbjct: 184 PSSFYPEPKVGHAIITLTRRR-VFNQDVFALEKLTRLLFTQRRRIALRVLTKSLGIGEDS 242 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 E ++ + + R +S E + + L +N Sbjct: 243 EIYMYARELLGDKRVYEVSGEVYATLARRLREN 275 >gi|225023525|ref|ZP_03712717.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC 23834] gi|224943698|gb|EEG24907.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC 23834] Length = 134 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 2/132 (1%) Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 + + QKEV ER+ A+ S +GRLSV+ + + + D+ P F P+PKV S V+ I Sbjct: 1 MHFMLQKEVVERMVAEPGSNDFGRLSVMLQYFFEMEKLLDVPPEAFSPAPKVDSAVVRLI 60 Query: 210 PHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267 P I E + ++AF +RRKT+R +LK L +N L AGI RAE+++ E Sbjct: 61 PAKYRIGQAQDFEQFAALVKQAFHQRRKTIRNNLKGLADDNDLQAAGISPQERAEHIAPE 120 Query: 268 DFCRITNILTDN 279 + + N+L Sbjct: 121 KYVALANLLAQK 132 >gi|221122621|ref|XP_002168090.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 479 Score = 158 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 N+L +I D LK + F +ANLPY I + +F + PF+ L+ Sbjct: 3 ANKLHLIVGDVLKSELPYF------DCCVANLPYQISSPFVFKLL---LHRPFFRCAVLM 53 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 FQ+E +R+ A+ Y RLS+ T + + + + F P PKV S+V+ P Sbjct: 54 FQREFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNP 113 Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P P + + + AF ++ KTL ++L + Sbjct: 114 PPPINFQEWDGLVRIAFVRKNKTLAACFSSKAVIDMLEK 152 >gi|73487015|gb|AAZ76628.1| Erm(40)wo [Mycobacterium wolinskyi] Length = 246 Score = 158 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 21/257 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D ++ I E G ++EIGAG G LT L LG R + IE D + Sbjct: 8 RHEFGQNFLCDRRVVADIVEIISRTTG-PIVEIGAGDGALTVPLQWLG-RPLTAIEIDSR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L +S E++ D L+ + +P I+ NLP+++ T +L + Sbjct: 66 RAERLAGHTSA-----EVVATDFLRFRLPR-----TPHVIVGNLPFHLTTAMLRRLL--- 112 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W LL Q EV R + ++ + + +S + F P P V Sbjct: 113 -HGPGWTDAVLLVQWEVARRRAGVGGATM---MTAQWWPWFEFGLARKVSANAFRPRPTV 168 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 + ++ +P + + + F R + + Q + R + L GI Sbjct: 169 DAGLLTITRRAHPMIDAADRRRYQALVHQVFTGRGRGIAQIIGRRVPRHWLRDNGINPAA 228 Query: 260 RAENLSIEDFCRITNIL 276 ++L+ + + + Sbjct: 229 LPKDLTATQWAALFAAV 245 >gi|148686526|gb|EDL18473.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus] gi|148686527|gb|EDL18474.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus] Length = 236 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 16/195 (8%) Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + ++L+++ D LK D F +ANLPY I + +F + PF+ Sbjct: 22 VFRPLASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVFKLL---LHRPFFR 72 Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 L+FQ+E R+ A+ Y RLS+ T + + + + F P PKV S+V+ Sbjct: 73 CAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRI 132 Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAEN 263 P P P + + + F ++ KTL + K + LL + ++ + E+ Sbjct: 133 EPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPED 192 Query: 264 LSIEDFCRITNILTD 278 SI D +I ILT Sbjct: 193 FSIAD--KIQQILTS 205 >gi|73487007|gb|AAZ76622.1| Erm(39)ho [Mycobacterium houstonense] Length = 246 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 24/262 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+ + GQNFL D ++ IA+ G ++E+GAG G LT L L R + Sbjct: 5 HHG---RHETGQNFLCDRRVVADIADIVARTTG-PIVEVGAGDGALTLPLQRLN-RPLTA 59 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE D++ L + +S E++ D L+ + +P ++ NLP+++ T +L Sbjct: 60 IEIDRRRATRLAERTSA-----EVVSADFLRYRLPR-----TPHVVVGNLPFHLTTAILR 109 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + A P W L+ Q EV R A + ++ + + IS F Sbjct: 110 RLLHA----PGWTDAVLVVQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKISAESF 162 Query: 196 FPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P V + ++ P+ + + + F R + L Q L+ L Sbjct: 163 RPRPSVDAGLLTITRRTEPLVDWADRQRYQSLVHRVFTGRGRGLGQILRPHVDRRWLGAN 222 Query: 254 GIETNLRAENLSIEDFCRITNI 275 + + L+ + + + Sbjct: 223 RVHPHALPRELTAGQWAALFDA 244 >gi|325177054|emb|CCA21009.1| dimethyladenosine transferase putative [Albugo laibachii Nc14] Length = 323 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 37/294 (12%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSG-------------SLDGITVIEIGAGPGNLTQMLL 66 K+++GQ+ L+ +++ I +++ I V+EIG+G GNLT LL Sbjct: 15 RLKRHLGQHLLVSNDVIASIIKAADFPSLLLQKAGNQTEERRIRVLEIGSGTGNLTAALL 74 Query: 67 TLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPI--RI 121 + +V +E D L+D ++L++ + K+ F+ S + + Sbjct: 75 DVDPTIQVHGVECDASMVKSLEDRFPSQLRTSQLQLHVNRIEKLRLSDLFSSSQGLIDAV 134 Query: 122 IANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +AN+PY + + ++ +S +P + + LL Q+E +R+ A ++ +YGRL+V T Sbjct: 135 VANIPYQLSSLIIARLVSYLHKYPGSVKCIILLLQEEFAQRMLATPHNQNYGRLAVNTSL 194 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTL 237 + + P VF P P+V S VI PH P L + + F ++ KTL Sbjct: 195 VGHVDALLKVGPEVFIPRPQVDSRVIKVTPHFPRFIRDPSFLREFDALLRICFLRKNKTL 254 Query: 238 RQSLKRLGGEN--------------LLHQAGIETNLRAENLSIEDFCRITNILT 277 R L E L + + N RA S +DF R+ L Sbjct: 255 RALLTSKSMERKLVGASDWKKNVLLALKECDLIKN-RAVQTSKDDFLRLFGRLE 307 >gi|255513974|gb|EET90238.1| ribosomal RNA adenine methylase transferase [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 277 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 20/236 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I PK+ +GQNFL KIAE +G DG +E+GAG G LT+ L + A V+ +E Sbjct: 19 IRPKRKLGQNFLKSP----KIAEFEAGYADGKNALELGAGLGVLTRKLCEV-ANSVVAVE 73 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD+ F LK + H L++I D +D E F +++N+PYNI +++L Sbjct: 74 KDKALFDRLKMNLAFH--NLKLINADFFDLDPEVF---KKCDIMVSNIPYNISSKVLMWL 128 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 L Q+E + I A+ S Y +LSV + + + +S F+P Sbjct: 129 SEHKMQ------AVLCLQREFVDHIIARPGSRKYSKLSVFSQLNFRIYPIKRVSRLSFYP 182 Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 +PKV S++I P I K+ ++K + +L GE + +A Sbjct: 183 APKVDSSIILLDPKDAKIDG---QAMKVISLLMEHKKKRIGNALADSSGELGISKA 235 >gi|313621079|gb|EFR92166.1| dimethyladenosine transferase [Listeria innocua FSL S4-378] Length = 162 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 10/155 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N + ++ +D LK D E+F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 Y + T ++ + + +S+T + QKEV +R Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADR 162 >gi|294868|gb|AAA26492.1| N-6-amino adenine-N-methyl transferase [Saccharopolyspora erythraea NRRL 2338] Length = 370 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 40/271 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ S HPN +E++ D L + P + +PY I + ++ + A Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIPYGITSAIVDWCLEA- 147 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P E+ T++ Q E + T + RL+V+T + + KV Sbjct: 148 ---PTIETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFV-----------EKV 191 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN- 258 S ++ P+ LE + + + F ++ SL R + A Sbjct: 192 DSAIMRLRRRAEPLLEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAAFDHAGV 251 Query: 259 --------LRAENLSIEDFCRITNILTDNQD 281 +R E + R+ L + Sbjct: 252 GGGAVVAYVRPE-----QWLRLFERLDQKNE 277 >gi|238060827|ref|ZP_04605536.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC 39149] gi|237882638|gb|EEP71466.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC 39149] Length = 263 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 19/262 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL D + +I ++ G ++E+GAG G LT+ L R ++ E D Sbjct: 15 RRVLSQNFLADPAAVARIVGAARPAPGDLLLEVGAGRGRLTRALAARCGR-LVAYEVDPV 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P + + + D L D P ++ N+P+++ ++ ++AD Sbjct: 74 AAADLAVTCAGLPG-VSLRRADFLAADAPD-----EPFAVVGNIPWSLTAAVVRWCLAAD 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 S TLL Q E + T + RL+VLT + + F P P+V Sbjct: 128 R----LRSATLLTQLEYARKRTGHAG--RWSRLTVLTWPEYAWRLAGTVPRTAFRPVPRV 181 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255 + ++ P P L + ++ + FG + SL R + L + Sbjct: 182 DAGILRLDRRAEPLLPPGDLPAYRRFVEVGFGGSGGCVAASLSRHRPRARVDAALRAVRL 241 Query: 256 ETNLRAENLSIEDFCRITNILT 277 + + A + E + + +L Sbjct: 242 DRDALAGEVWPEQWITLHRLLR 263 >gi|308448554|ref|XP_003087684.1| hypothetical protein CRE_15249 [Caenorhabditis remanei] gi|308253631|gb|EFO97583.1| hypothetical protein CRE_15249 [Caenorhabditis remanei] Length = 131 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 2/127 (1%) Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 + + QKEV +RITA N+ YGRLSV+ + K T +F++ P F P PKVTS V Sbjct: 1 MHFMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKVTSAVFRLE 60 Query: 210 PHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267 P+ ++L ++ F +RRKTLR SLK + E+ AG++ R E L++ Sbjct: 61 PYATKPIVAKSEKALARLVSHVFTQRRKTLRNSLKGMLLEDGFENAGVDPMARPETLTLA 120 Query: 268 DFCRITN 274 F +++ Sbjct: 121 QFVALSD 127 >gi|10640644|emb|CAC12422.1| rRNA (adenine-N6, N6-)-dimethyltransferase (DIM1, yeast) related protein [Thermoplasma acidophilum] Length = 233 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 28/258 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ FL I + + G + TV+EIG G G LT++L+ G K+ +EKD+ F Sbjct: 2 GQVFLQSRRIAEYEVDLLG--EPGTVLEIGPGHGVLTKILVERG-FKITAVEKDRYIFGE 58 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L+ + + L +I D L + S II N+PY+I + ++F + Sbjct: 59 LQSLRAA---NLNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEFE---- 105 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + ++ QKE E+I RL V R + +S F P P+V S + Sbjct: 106 -FRRSVIMVQKEFAEKIAFP---DDMSRLYVNAHVRYNVELKRYVSRKNFNPQPEVDSAI 161 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 + P LE L + + F K+RK L + E+L + R NL+ Sbjct: 162 LVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKLSNIF-DICPEDL-------ADKRPSNLT 213 Query: 266 IEDFCRITNILTDNQDIA 283 + + + +L D+ A Sbjct: 214 VSEILGLARLLFDSGSSA 231 >gi|38261101|ref|NP_940746.1| Erm(X) [Arcanobacterium pyogenes] gi|37993856|gb|AAR07014.1| Erm(X) [Arcanobacterium pyogenes] Length = 284 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL D I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEHGQNFLTDHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAYLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + L +S +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRS 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + +R+ L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIREILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ LH GI+ L D+ + + Sbjct: 224 ETQSWLHSRGIDPATLPPRLHTSDWIDLFQV 254 >gi|329766403|ref|ZP_08257949.1| ribosomal RNA adenine methylase transferase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137172|gb|EGG41462.1| ribosomal RNA adenine methylase transferase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 235 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 26/258 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K +GQ+FL I + I + V E+G G G LT LL A+KVI I+ D++ Sbjct: 4 RKRLGQHFLTSNTIAQSIVSEANISGNDIVFELGTGLGILT-PLLCEKAKKVISIDADRE 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + K S N L + D F ++NLPY+ + W++ Sbjct: 63 LYENAKSRFSHIDN-LTVEFGD-------GFQKQDKFSIFVSNLPYSKSKEAI-EWLAIT 113 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + ++ QKE E++ + + + +S++ + + ++ + F P PKV Sbjct: 114 PFSHGI----IMVQKEFAEKLLTKS-TKNRRSVSIIANYVFEIEKFLNVGKNNFSPPPKV 168 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S V+ + + L K+ F RRKT++ K+ G E L+ + R Sbjct: 169 DSVVLKITKKKSIEKDIINVLNKM----FSYRRKTIQNIFKQFGKETLMDK-------RL 217 Query: 262 ENLSIEDFCRITNILTDN 279 ++LS ++ + + + Sbjct: 218 DDLSGDEIIDLAKEILER 235 >gi|45656257|ref|YP_000343.1| dimethyladenosine transferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294827644|ref|NP_710586.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai str. 56601] gi|45599491|gb|AAS68980.1| dimethyladenosine transferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385487|gb|AAN47604.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai str. 56601] Length = 301 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 118/301 (39%), Gaps = 48/301 (15%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLT 62 K ++ L P K GQNFL+D N ++ I + ++EIG G G ++ Sbjct: 10 KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILDCLNFDLLSTIDRILEIGPGLGAIS 69 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 LL + V + E D + L++ + E+ + +AL E + Sbjct: 70 HGLLDFK-KPVTLFEIDPIYSNWLREYLPE----FELKEGNALDFLSEY---SQDSTYLF 121 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 NLPY I + L +++ + T L QKE +RI+A+ +S + LS W Sbjct: 122 GNLPYYISSELT---LNSVKNLKGLKGATFLVQKEFAKRISAEPSSIQF-YLSAYGNW-- 175 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTLR 238 ++ DI F+P P V S+++ + + E +L+ I + AF +RK L Sbjct: 176 --SLKKDIKAGAFYPKPNVDSSILE---YKSLPVFKNESGFIALECICRTAFWGKRKKLT 230 Query: 239 QSLKRLGGE----------------------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 S + E L I+ + R E L +DF IL Sbjct: 231 SSFRDAPIESLPLEVYSSENFSEKTFRTECLKALKSVNIDLDKRPEELKSKDFHEAAKIL 290 Query: 277 T 277 + Sbjct: 291 S 291 >gi|161528889|ref|YP_001582715.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus maritimus SCM1] gi|160340190|gb|ABX13277.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus maritimus SCM1] Length = 234 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 27/255 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K +GQ+FL I + I + V EIG G G LT LL A+KVI ++ D+ Sbjct: 4 RKLLGQHFLNSQLIAESIVSEAKITKNDIVYEIGTGLGVLT-PLLCKKAKKVISVDADEN 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 K+ S N L + D K + ++NLPY+ ++ W++ Sbjct: 63 LIKKAKNTFSDIDN-LVLKSGDGFK-------KKDTFSVFVSNLPYS-KSKDAIEWLAQR 113 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 T+ ++ QKE +++ A+ S +S++ + +++ + F P PKV Sbjct: 114 TFSHG----VIMVQKEFAQKLVAK--SKDRKAISIIATHAFDIEKISNVNKNNFSPPPKV 167 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S V+ + ++L E F RRKT++ LK+ E+ L + R Sbjct: 168 DSVVLKITKKTD----MDKTLISTINEIFSYRRKTVKNILKQFHKESDLEK-------RV 216 Query: 262 ENLSIEDFCRITNIL 276 + L+ ++ + + Sbjct: 217 DTLTGDEIVNLAKQI 231 >gi|68536522|ref|YP_251227.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411] gi|68264121|emb|CAI37609.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411] Length = 284 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 25/263 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D I+ I + G +IEIG G G LT L LG R + +E D + Sbjct: 8 RHEHGQNFLTDHKIINSIVDLVKQSSG-PIIEIGPGSGALTHPLSRLG-RPITAVEVDAK 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ +E++ D L +P I+ N+P+++ T +L + A Sbjct: 66 LAAKLTKKTASAS--VEVVHGDFLNFPLPA-----TPCVIVGNIPFHLTTAILRKLLHA- 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W LL Q EV R A + ++ + + F P P V Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRSAFRPQPNV 171 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQ 252 ++ +P ++ + + F R + + + L+R G ++ L Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRSETQSWLRS 231 Query: 253 AGIETNLRAENLSIEDFCRITNI 275 GI+ L D+ + + Sbjct: 232 RGIDPATLPPRLRTSDWIDLFQV 254 >gi|156087991|ref|XP_001611402.1| dimethyladenosine transferase [Babesia bovis T2Bo] gi|154798656|gb|EDO07834.1| dimethyladenosine transferase, putative [Babesia bovis] Length = 246 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 20/213 (9%) Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133 IE D + L L++I DD L+VD++ + II NLP+ I +++ Sbjct: 3 AIEIDARAISQLSRNLPD----LDVIHDDVLQVDYDAVSKAKGCKLWIIGNLPFYITSQI 58 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 LF + ++ + Q EV +RI A+ N Y LSV+ K ++ F I + Sbjct: 59 LFCLVDYKR---VIDTAVVTAQWEVAQRIVARPNQFEYSILSVVLQLYAKPSLCFKIPNY 115 Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 F+P PKV S VI P C LK+I +++F +RRK L+ SL+ L Q Sbjct: 116 AFYPVPKVDSGVIRLEFKNKTNPECAPLVLKRILRDSFNQRRKMLKTSLRTC-----LDQ 170 Query: 253 AGIE------TNLRAENLSIEDFCRITNILTDN 279 I ++R + L E F ++ + + Sbjct: 171 LEIPKLPSELEDIRPQQLPPEGFVALSKWIERH 203 >gi|302348251|ref|YP_003815889.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15] gi|302328663|gb|ADL18858.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15] Length = 250 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 121/257 (47%), Gaps = 18/257 (7%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 + +GQ FL++ + + E +G+ V+E+G G G LT + + AR+V+ +E D++ Sbjct: 5 RDLGQRFLVNKDGVSLFLEGLSGFEGLDVLEVGPGEGQLTVSIANV-ARRVLAVEFDREL 63 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L ++ P + ++ D ++ I+ +++N P+ + + ++ N Sbjct: 64 AARL---VARVPYNVSVVVGD-----GARYALIARSPVLVSNTPFYLSSSIITN----AA 111 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 E + L Q EV +R+TA+ S YGRLSV++ + ++ + F P PKV Sbjct: 112 RNNNLELMVLGLQLEVAKRVTARPGSELYGRLSVISQAYFRTQIIGVMPSSWFKPRPKVD 171 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL-RQSLKRLGG-ENLLHQAGIETNLR 260 + V+ + P E+L+K+T+ F R K + + +L+ LG ++ R Sbjct: 172 AAVVRMVRIRRWDPTG-EALEKVTRCLFSYRNKLVTKAALRCLGSVPEDFKSL--PSSTR 228 Query: 261 AENLSIEDFCRITNILT 277 +L+ E + L+ Sbjct: 229 VRDLAPEQLIGVAKWLS 245 >gi|213580131|ref|ZP_03361957.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 120 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKI 225 S YGRLSV+ + + + ++ P F P PKV S V+ +PH P P + L +I Sbjct: 1 SKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRI 60 Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 T EAF +RRKT+R SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 61 TTEAFNQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 117 >gi|260577655|ref|ZP_05845591.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC 43734] gi|258604201|gb|EEW17442.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC 43734] Length = 284 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 25/263 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D I+ I + G +IEIG G G LT L LG R + +E D + Sbjct: 8 RHEHGQNFLTDHKIINSIVDLVKESSG-PIIEIGPGSGALTHPLSRLG-RPITAVEVDAK 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ +E++ D L +P I+ N+P+++ T +L + A Sbjct: 66 LAAKLTKKTASAS--VEVVHGDFLNFPLPA-----TPCVIVGNIPFHLTTAILRELLHA- 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W LL Q EV R A + ++ + + F P P V Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRSAFRPQPNV 171 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQ 252 ++ +P ++ + + F R + + + L+R G ++ L Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRSETQSWLRS 231 Query: 253 AGIETNLRAENLSIEDFCRITNI 275 GI+ L D+ + + Sbjct: 232 RGIDPATLPPRLRTSDWIDLFQV 254 >gi|302543001|ref|ZP_07295343.1| dimethyladenosine transferase [Streptomyces hygroscopicus ATCC 53653] gi|302460619|gb|EFL23712.1| dimethyladenosine transferase [Streptomyces himastatinicus ATCC 53653] Length = 174 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 10/169 (5%) Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 +P ++ANLPYN+ +L N ++ P E ++ Q EV +R+ A S YG Sbjct: 6 LPGPAPTALVANLPYNVAVPVLLNMLAR---FPTIERTLVMVQSEVADRLAAPPGSKVYG 62 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230 SV W I +VF+P+P V S ++ + P+ E + + AF Sbjct: 63 VPSVKAAWYAHVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPLTTTASREEVFAVVDAAF 122 Query: 231 GKRRKTLRQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274 +RRKTLR +L E L AGI R E+L++EDF I Sbjct: 123 AQRRKTLRAALSGWAGSAPAAEAALTAAGISPQARGESLTVEDFAAIAE 171 >gi|170291019|ref|YP_001737835.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum cryptofilum OPF8] gi|170175099|gb|ACB08152.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum cryptofilum OPF8] Length = 243 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 126/255 (49%), Gaps = 21/255 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 +GQ+ ++ +K IA+ G VIE+GAG GNL++ +L+ RK+I++EKD++F Sbjct: 4 KLGQHMMVSRKWIKLIADLLDVR-GDEVIELGAGTGNLSEEILSRDPRKLILVEKDERFV 62 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 IL++ R+EI++ D ++ + +I +N PY + ++L+ ++ Sbjct: 63 DILREKFGG-DERVEILRADIRELLPLRV------EKIASNPPYYLSSQLIIGLARSE-- 113 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + L QKE ER+ A+ + YG LSV+ K +++ + F P PKV S Sbjct: 114 ---FRRAVLTLQKEFAERLIAKPGTEKYGSLSVIASLLLKVSLVSIVDRRSFNPVPKVDS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQAGIETNLRAE 262 ++ P + + + + K + F +R++ L+ SLK L + L A R Sbjct: 171 AILVIEPKQDEL---RDQILKYCKLIFSRRKRELKNSLKPVLRSVDGLPHAE----RRPY 223 Query: 263 NLSIEDFCRITNILT 277 ++S E+ + L+ Sbjct: 224 HMSPEEVREVIAWLS 238 >gi|206602077|gb|EDZ38559.1| Putative dimethyladenosine transferase [Leptospirillum sp. Group II '5-way CG'] Length = 256 Score = 151 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 132/238 (55%), Gaps = 16/238 (6%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 ++EIG G G L+ L T+ A + ++E+D++ L+ S + + I++ DA+++ Sbjct: 11 RIVEIGPGKGILSGYLATMTAD-LWLVERDRRLAEPLRTTFSGNSG-VRILEADAMEL-- 66 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 F N SP +++NLPYNI L ++++D +PP + + L+FQ+EV +R+ A+ P Sbjct: 67 -SFGNDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDP 122 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 YG LSV+T + + D++P F+P+PKV S+V+ +P C + ++++ Sbjct: 123 DYGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVLTVLPL-PVQDECTWAAISLSRKL 181 Query: 230 FGKRRKTLRQSLKRLG-GENLLH-----QAGIE-TNLRAENLSIEDFCRITNILTDNQ 280 F RRK+L ++L+ GE L Q+ + + + ++LS EDF + + ++ Sbjct: 182 FCYRRKSLGRALRTAFPGEESLADGTFFQSETDFFSRKVDSLSPEDFQELAASIRNHH 239 >gi|207092922|ref|ZP_03240709.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_AG0C1] Length = 261 Score = 151 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 33/234 (14%) Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 +FL D + L +I + L+ + +IEIG G G+LT LL K E D ++ Sbjct: 1 HFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EIDSNLCEKMR 58 Query: 88 D--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + + P LE+++ DAL F P +I+NLPY I TRL+ N + P Sbjct: 59 SKLKAQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLNALKD----P 108 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 L ++ QKEV + A+ + LSVL AT++FD+ P F P PKV S+V Sbjct: 109 KCRGLLVMTQKEVALKFCARDSQN---ALSVLAHAIGDATLLFDVPPSAFSPPPKVFSSV 165 Query: 206 IHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 I + E+L+ + F RKTL +LK+ Sbjct: 166 FEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKACFSSPRKTLSNNLKK 219 >gi|290559679|gb|EFD93005.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 262 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 12/213 (5%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL D ++ KI ++S ++EIG+G G LT+ + TL +KV IE D + + Sbjct: 7 FLKDESVFNKIIKASELKKDDIILEIGSGDGRLTKRIATL-VKKVYAIEIDTNLYDSART 65 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + + +E I DAL ++F + N +II+NLPY I + + I Sbjct: 66 LVEN--DNIEFINADALSIEFPENAN-----KIISNLPYAISSPITEKIIYFLNKKRDG- 117 Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 L++Q E G R+ A Y +SV + + ++S + F P P V S ++ Sbjct: 118 FAVLMYQLEFGNRMLAFPGIRDYSMISVFAQYTCDVKHISNVSKNSFRPKPAVESIILKL 177 Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 IP I ++ + T+ F ++K L ++ Sbjct: 178 IPKKIEID---KNFLRFTRLLFQHKKKNLYSAI 207 >gi|1171091|sp|P43433|MYRB_MICGR RecName: Full=Mycinamicin-resistance protein myrB gi|286054|dbj|BAA03402.1| myrB [Micromonospora griseorubida] Length = 311 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 107/263 (40%), Gaps = 22/263 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL+D + +IAE S V+E+GAG G +T+ L+ V +E D + Sbjct: 21 RHELGQNFLVDRGVCTRIAEVVSSTTAHPVLELGAGDGAITRALVAAN-LPVTALELDPR 79 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + + + ++ D L+ DF + P +++ +P++I T LL I Sbjct: 80 RVRRLQRTFA---DGVTVVHGDMLRYDFGPY-----PHHVVSTVPFSITTPLLRRLIGQR 131 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 FW + LL Q EV + + L+ + + T++ + F P P V Sbjct: 132 ----FWHTAVLLVQWEVARKRAGVGGTTM---LTAASWPWYEFTLVERVPKTSFDPVPSV 184 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255 ++ P+ C+ + + +E + + L L+ + L + + Sbjct: 185 DGGILVIERRSAPLLDDRCVGDYQNLVREVYTGPGRGLAAILRTRLPGREVDAWLRRERV 244 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 + +L + + + + Sbjct: 245 DPAALPRDLKAGHWASLYRLYRE 267 >gi|14600800|ref|NP_147322.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Aeropyrum pernix K1] gi|27151617|sp|Q9YEM5|RSMA_AERPE RecName: Full=Probable ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase gi|5104206|dbj|BAA79521.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Aeropyrum pernix K1] Length = 277 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 110/279 (39%), Gaps = 30/279 (10%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILK---KIAESSGSLDGITVIEIGAGPGNLTQMLL 66 ++ +L + P +GQ+FL+D + K E + + +EIG G G++T Sbjct: 17 VREVLGLAGLRPSDRLGQHFLIDDRAVGEFLKPLEKAAAEGIREALEIGPGAGSITLPAA 76 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 + R ++ +E D + L ++ P R+ +I D + S + +N P Sbjct: 77 EVLDR-IVAVELDNRLASALSRLA---PARVAVITGDGV-----SHAAASQAPLVFSNTP 127 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 +N+ ++ A + L Q EV R+TA+ S Y RLSVL A + Sbjct: 128 FNLSPAIV----EALAVNNRVAAAVLGVQYEVARRMTARPGSRDYSRLSVLVSLVFHAEL 183 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 + P ++P P+V + V+ +L+ + AF +R K + L+R Sbjct: 184 AGVVRPQAYYPRPQVLTAVVTLRRRRRWRSLYARALE-LAGCAFTQRNKKASKVLRRC-- 240 Query: 247 ENLLHQAGIET--------NLRAENLSIEDFCRITNILT 277 L AG + R L EDF + Sbjct: 241 ---LEAAGCAPPPWLDSLGDARVWMLRPEDFVGLAEACR 276 >gi|325123521|gb|ADY83044.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter calcoaceticus PHEA-2] Length = 160 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 5/146 (3%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D ++ KI S G ++EIG G LT L+ + V+E Sbjct: 13 GHKARKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 D+ L + HP RL II+ DALK DF + P+R++ NLPYNI T LLF+ Sbjct: 72 LDRDLAAGLPERV-PHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHL 130 Query: 138 ISADTWPPFWESLTLLFQKEVGERIT 163 + + + + + QK + RI Sbjct: 131 LE---FGSKVKDMHFMLQKVLLNRIQ 153 >gi|73486998|gb|AAZ76615.1| Erm(39)bo [Mycobacterium boenickei] Length = 246 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 24/264 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+ + GQNFL D ++ I + G ++EIGAG G LT L L R++ Sbjct: 5 HHG---RHEYGQNFLCDRRVVADIVKIVSHTTG-PIVEIGAGDGALTLPLQRLN-RQLTA 59 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE + E++ D L+ ++P ++ NLP+++ T L Sbjct: 60 IE-----IDRXRARRLADRTSAEVVGADFLQYRLP-----TTPHVVVGNLPFHLTTAXLR 109 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 P W LL Q EV R + ++ + ++ +S F Sbjct: 110 RL----XHGPGWTDAVLLMQWEVARRXAGVGGATM---MTAQWWPWFEFSLAXKVSADAF 162 Query: 196 FPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P V + ++ P+ + + E F R + L Q L+R L Sbjct: 163 RPRPGVDAGLLTITRRREPLVPTADRRRYQALAHEVFTGRGRGLAQILRRHVDRRWLQAN 222 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI + +LS + + + + + Sbjct: 223 GIHPSALPRDLSAQQWAALFDAVR 246 >gi|258545947|ref|ZP_05706181.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] gi|258518825|gb|EEV87684.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] Length = 136 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 2/128 (1%) Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 + + QKEV +RITA S YGRLS++ + T +FDI P F P PKV S V+ + Sbjct: 1 MHYMLQKEVVDRITAAPGSKTYGRLSLMAQLWCETTALFDIPPDAFDPPPKVDSAVVRLV 60 Query: 210 PHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267 P P L + ++ + AF +RRK LR++ L I+ RAE L Sbjct: 61 PRPAPAWQIDDLATFEETVRLAFAQRRKMLRKTFAHWMNAAALEALDIDPTARAETLDGA 120 Query: 268 DFCRITNI 275 F R+ N Sbjct: 121 AFARLANA 128 >gi|90901924|gb|ABE01848.1| Erm(39)po [Mycobacterium porcinum] Length = 246 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 24/264 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+ + GQNFL D ++ I + S +IEIGAG G LT L L R++ Sbjct: 5 HHG---RHEYGQNFLCDRRVIADIV-TIVSRTTGPIIEIGAGDGALTLPLQRLN-RQLTA 59 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 IE + E++ D LK ++P ++ NLP+++ T +L Sbjct: 60 IE-----IDRRRARRLADRTSAEVVSADFLKYRLP-----TAPHVVVGNLPFHLTTAMLR 109 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 + P W LL Q EV R A + ++ + + +S F Sbjct: 110 RLL----HGPGWTDAVLLMQWEVARRRAAIGGATM---MTAQWWPWFEFGLARKVSADAF 162 Query: 196 FPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P V + ++ P+ + + E F R + Q L+ L Sbjct: 163 RPRPGVDAGLLTITRRGEPLVPTADRRRYQALAHEVFTGRGHGMAQILRHHVDRRWLQAN 222 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 GI + +LS + + + + + Sbjct: 223 GIHPSALPRDLSAQQWAALFDAVR 246 >gi|320590414|gb|EFX02857.1| dimethyladenosine transferase [Grosmannia clavigera kw1407] Length = 318 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 14/199 (7%) Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNI 115 GN+T +L ARK I IE D + + P +LE++ DA+K +F F Sbjct: 54 TGNITTRILE-KARKCIAIELDPRMAAEVTKRVQGGPLQKKLEVLLGDAIKTEFPPF--- 109 Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 I+N PY I + L+F +S P + L+FQKE +R+ A+ Y RLS Sbjct: 110 ---DVCISNTPYQISSPLVFKLLSLPNPP---RTAVLMFQKEFAQRLVARPGDTLYCRLS 163 Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKR 233 V + + + + F P P+V S V+ P + + + AF ++ Sbjct: 164 VNAQFFARIAHVLKVGKANFNPPPQVESAVVRITPKTGSERPKFNFSEMDGMLRVAFNRK 223 Query: 234 RKTLRQSLKRLGGENLLHQ 252 +T+R S +L + Sbjct: 224 NRTMRASFASKEVLAMLAR 242 >gi|238593367|ref|XP_002393175.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553] gi|215460264|gb|EEB94105.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553] Length = 228 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 11/177 (6%) Query: 78 KDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P RLEI+ D +K D F I+N PY I + L+F Sbjct: 1 MDPRMAAELTKRVQGKPEQRRLEIMIGDFVKADLPYF------DVCISNTPYQISSPLIF 54 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 +S P L+FQ+E R+ A+ S + RLS K + + + F Sbjct: 55 RLLSQRPLP---RICILMFQREFALRLIAKAGSELWSRLSANVQLYAKVDYLMHVGKNNF 111 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P PKV S+V+ P P P E + + F +R KT+ + G +L + Sbjct: 112 RPPPKVESSVVRIAPRDPPPPVKFEEFDGLGRIVFSRRNKTIHANFMAKGVIPMLEK 168 >gi|1927195|gb|AAB51440.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces viridochromogenes] Length = 259 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 21/263 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + + QNFL D ++A + L ++E+GAG G LT++L R ++ E D Sbjct: 8 SRALSQNFLADRAAAGQLARLAAPHGLPVPLLLEVGAGKGALTELLAPRC-RSLLAYEID 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P+L+ + P+ + ++ +D L+ + +P + N+P++ ++ + Sbjct: 67 PRLVPVLRSRFADAPH-VRVLGEDFLRARAPR-----TPFSVAGNVPFSRTAAVVAWCLR 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A P TLL Q E R T S + RL+VLT R + + + F P P Sbjct: 121 A----PHLTDATLLTQLEYARRRTGDYGS--WTRLTVLTWPRHEWRLAGRVGRRSFRPVP 174 Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL----KRLGGENLLHQA 253 +V + ++ P+ P +++ F +L SL R + A Sbjct: 175 RVDAGIVRIERRRTPLLAPGADAGWRELVDLGFSGAGGSLHASLRRARPRRRVDAAFRAA 234 Query: 254 GIETNLRAENLSIEDFCRITNIL 276 G++ ++ + + R+ +L Sbjct: 235 GLDRDVLVGEVPPWTWLRLHEVL 257 >gi|581701|emb|CAA44667.1| methyltransferase [Streptomyces lincolnensis] Length = 278 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 24/257 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL+D +I+K I + ++I G ++T L LG R V +E D + Sbjct: 8 RQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRRG--HVTLPLSRLG-RPVTAVELDPR 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K +S++ P ++++ +D L+ P ++ N+P+++ T + + A Sbjct: 65 ---RVKRLSARAPENVKVVGEDILRFRLPTV-----PHTVVGNIPFHVTTATMRRILVA- 115 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W S L+ Q EV R ++ + +++ + F P+P V Sbjct: 116 ---PAWVSAVLVVQWEVARRRAGIGGC---SLVTAESWPWFDFSVLKRVPRFAFRPAPSV 169 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255 ++ P+ + ++ F R LR+ L+R+G G+ Sbjct: 170 DGGILVIERRPEPLVRERREYQAFVRQVFTGRGHGLREILQRIGRVQDSDLSAWFRAHGV 229 Query: 256 ETNLRAENLSIEDFCRI 272 ++L+ E + + Sbjct: 230 SPQALPKDLTAEQWASL 246 >gi|40807669|gb|AAR92235.1| Erm(39) [Mycobacterium fortuitum] Length = 246 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 96/252 (38%), Gaps = 21/252 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL D ++ I G ++EIGAG G LT L LG R + IE D Sbjct: 12 GQNFLRDRRVVGDIVRMVSHTAG-PIVEIGAGDGALTLPLQRLG-RPLTAIEIDLHRARR 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L D ++ E+I D L+ + +P ++ NLP+++ T +L + + Sbjct: 70 LADRTTA-----EVIATDFLRYRLPR-----TPHVVVGNLPFHLTTAILRRLLHEN---- 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 W LL Q EV R + ++ + + +S F P P V + + Sbjct: 116 GWTDAILLVQWEVARRRAGVGGATM---MTAQWWPWFEFGLARKVSADAFRPRPSVDAGL 172 Query: 206 IHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 + P+ + + + F R + L Q L+ L GI + Sbjct: 173 LTIQRRAEPLLPWADRRAYQALVHRVFTGRGRGLAQILRPHVHPRWLSANGIHPSALPRA 232 Query: 264 LSIEDFCRITNI 275 L+ + + + Sbjct: 233 LTARQWVALFDA 244 >gi|47157009|gb|AAT12376.1| putative dimethyladenosine transferase-like protein [Antonospora locustae] Length = 219 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 35/222 (15%) Query: 72 KVIVIEKDQQFFPIL-KDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 K++ EKD + L K +S++H ++ E+ DAL+ F F I+N+PY I Sbjct: 1 KLVCYEKDTRLAAELVKKVSARHLSHKFELNVGDALRATFPPF------DMCISNIPYQI 54 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 + LLF + D ++ ++FQ+E +R+ A+ Y RLSV K + + Sbjct: 55 SSPLLFKLLQED-----FKCAYIMFQREFAQRLIARPGCSEYSRLSVAVQLLAKVHNVMN 109 Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248 +S + F P P V S+V+ P + P +E ++ + F ++ K L KR ++ Sbjct: 110 VSRNSFVPPPMVDSSVVRIEPRVPRPPINIEEFNRLLKICFLRKNKRLSGIFKRTVIQDM 169 Query: 249 ------------------LLHQAGIETNLRAENLSIEDFCRI 272 +L + G + RA + IEDF + Sbjct: 170 QKVNKAYTLQEIEKKTTGILRKLGAD---RAAKMDIEDFLFL 208 >gi|34733387|gb|AAN86837.2| Erm(38) [Mycobacterium smegmatis] Length = 386 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 27/269 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+ + +GQNFL D ++ I E +G +IEIGAG G LT L L AR + Sbjct: 5 HHG---RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTA 59 Query: 76 IEKDQQFFPILKDISSQHPNR-----LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +E D + L +++ E++ D L+ + SP ++ NLP+++ Sbjct: 60 VEVDARRARRLAQRTARSAPGPASRPTEVVAADFLRYPLPR-----SPHVVVGNLPFHLT 114 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +L + P W + LL Q EV R A + ++ + + + Sbjct: 115 TAILRRLL----HGPGWTTAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKV 167 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245 S F P P V + ++ P+ + + F R + Q L+RL Sbjct: 168 SAASFTPRPAVDAGLLTITRRSRPLVDVADRARYQALVHRVFTGRGHGMAQILQRLPTPV 227 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274 L GI N LS + + Sbjct: 228 PRTWLRANGIAPNSLPRQLSAAQWAALFE 256 >gi|256412|gb|AAB23456.1| lincomycin-resistance determinant LmrB=23S rRNA adenine(2058)-N-methyltransferase homolog [Streptomyces lincolnensis, 78-11, Peptide, 278 aa] Length = 278 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 24/257 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL+D +I+K I + ++I G ++T L LG R V +E D + Sbjct: 8 RQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRRG--HVTLPLSRLG-RPVTAVELDPR 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +K +S++ P ++++ +D L+ P ++ N+P+++ T + + A Sbjct: 65 ---RVKRLSARAPENVKVVGEDILRFRLPTV-----PHTVVGNIPFHVTTATMRRILVA- 115 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W S L+ Q EV R ++ + +++ + F P+P V Sbjct: 116 ---PAWVSAVLVVQWEVARRRAGIGGC---SLVTAESWPWFDFSVLKRVPRFAFRPAPSV 169 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255 ++ P+ + ++ F R LR+ L+R+G G+ Sbjct: 170 DGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIGRVQDSDLSAWFRAHGV 229 Query: 256 ETNLRAENLSIEDFCRI 272 ++L+ E + + Sbjct: 230 SPQALPKDLTAEQWASL 246 >gi|260427332|ref|ZP_05781311.1| dimethyladenosine transferase [Citreicella sp. SE45] gi|260421824|gb|EEX15075.1| dimethyladenosine transferase [Citreicella sp. SE45] Length = 257 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 2/127 (1%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M+ + L+ +++ + + KK +GQNFLLDLN+ KIA +G L G+ V+EIG GPG Sbjct: 1 MSAIDGLPPLREVIATHDLSAKKSLGQNFLLDLNLTAKIARQAGDLAGMDVLEIGPGPGG 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LL GAR+V+ IEKD + L +I++ +P RLE+I+ DAL+VD +++ PI Sbjct: 61 LTRGLLAEGARRVLAIEKDARCLSALAEIAAAYPGRLEVIEGDALQVD--PLQHLTPPIA 118 Query: 121 IIANLPY 127 I ANLPY Sbjct: 119 ICANLPY 125 Score = 79.9 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRIT 273 P + L+++ AF +RRK LR +LK L E+ L + I RAE +S+E FC + Sbjct: 194 PAEQKVLERVVAAAFNQRRKMLRAALKGLAPDIEDRLQASDIAPTDRAEQVSLEQFCALA 253 Query: 274 NILT 277 L Sbjct: 254 RTLA 257 >gi|255023855|ref|ZP_05295841.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-208] Length = 143 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 7/133 (5%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N ++++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWIS 139 Y + T ++ + Sbjct: 131 YYVTTPIILKLLH 143 >gi|188593347|emb|CAO72210.1| ErmX protein [Bifidobacterium thermophilum] gi|188593353|emb|CAO72214.1| ErmX protein [Bifidobacterium thermophilum] Length = 255 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + L +S +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|309798999|ref|ZP_07693256.1| dimethyladenosine transferase [Streptococcus infantis SK1302] gi|308117403|gb|EFO54822.1| dimethyladenosine transferase [Streptococcus infantis SK1302] Length = 145 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 7/145 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + +IEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNIIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD K F N Sbjct: 60 LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAKHIQNFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISAD 141 PI+++ANLPY I T +L + I + Sbjct: 118 LPIKVVANLPYYITTPILMHLIESG 142 >gi|124515833|gb|EAY57342.1| putative dimethyladenosine transferase [Leptospirillum rubarum] Length = 256 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 131/231 (56%), Gaps = 16/231 (6%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 ++EIG G G L+ +L T+ + ++E+D+Q L+ S+ P + I+++DA++ Sbjct: 11 RILEIGPGKGILSGVLATMTED-LWLVERDRQLAETLRKTFSETPG-VRILEEDAMEF-- 66 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 F N SP +++NLPYNI L ++++D +PP + + L+FQ+EV +R+ A+ P Sbjct: 67 -SFGNDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDP 122 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 YG LSV+T + + D++P F+P+PKV S+V+ +P C + ++++ Sbjct: 123 DYGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVVTVLPLS-VQDECTWAAISLSRKL 181 Query: 230 FGKRRKTLRQSLKRLGG--ENLLHQAGIET-----NLRAENLSIEDFCRIT 273 F RRK+L ++L+ E+LL +T + + ++LS EDF ++ Sbjct: 182 FCYRRKSLGRALRTAFSGEESLLDGTFFKTETDFFSRKVDSLSPEDFRKLA 232 >gi|188593342|emb|CAO72206.1| ErmX protein [Bifidobacterium thermophilum] Length = 284 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + L +S +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|242045760|ref|XP_002460751.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor] gi|241924128|gb|EER97272.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor] Length = 396 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 16/220 (7%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ+ L + +L I + G V+E+G G GNLT LL A V +E Sbjct: 32 FRLHKRRGQHLLTNPRVLDAIVRRAAIRPGDAVLEVGPGTGNLTVRLLASPAASVAAVEI 91 Query: 79 DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 D + + + ++L + DA+KVDF +F ++N+PY I + L Sbjct: 92 DPRMAAAVAARARDLGLAHKLTVTTGDAMKVDFPEF------DACVSNIPYAISSPLTAK 145 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + + TLL Q+E R+ + L+ +++ D+S + F Sbjct: 146 LLFG---SYRFRTATLLVQREFARRLVGAPGHGEHNHLATNVRLVAHVSLLMDVSKNDFV 202 Query: 197 PSPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFG 231 P P V S+++ P L+ + + FG Sbjct: 203 PVPGVDSSLVEIRMKEVRPTEVEPGISLDEWLEFARVCFG 242 >gi|13517632|gb|AAK28910.1|AF338706_1 ErmX [Corynebacterium jeikeium] Length = 284 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 25/263 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 8 RHEHGQNFLTDHKIINSIVDLVKQTSG-PIIEIGPGSGALTHPISHLG-RAITAVEVDAK 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ +E++ DD L +P I+ N+P+++ T +L + A Sbjct: 66 LAAKLTKKTASAS--VEVVHDDFLNFPLPA-----TPCVIVGNIPFHLTTAILRKLLHA- 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W LL Q EV R A + ++ + F P P V Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRXPRSAFRPQPNV 171 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQ 252 ++ +P ++ + + F R + + + L+R G ++ L Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRSETQSWLRS 231 Query: 253 AGIETNLRAENLSIEDFCRITNI 275 GI+ L D+ + + Sbjct: 232 RGIDPATLPPRLHTSDWIDLFQV 254 >gi|188593350|emb|CAO72212.1| ErmX protein [Bifidobacterium thermophilum] Length = 284 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + L +S +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|262203305|ref|YP_003274513.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM 43247] gi|262086652|gb|ACY22620.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM 43247] Length = 253 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 99/257 (38%), Gaps = 26/257 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + +GQNFL+ +++I + + DG ++EIG+G G LT L L R + I+ D + Sbjct: 10 RHELGQNFLVHQPTIQRIVDLIDATDG-PILEIGSGGGALTAHLAALD-RPLTAIDIDAR 67 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + + D L ++ ++ N+P+++ + +L + D Sbjct: 68 LIHSLRQRFPH----INALHADVLT-------HVIDAPVVVGNIPFHLTSAILRRLLGHD 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 TW LL Q EV R + ++ + + F P+P V Sbjct: 117 TW----TDSVLLVQWEVARRRAGVGGATM---MTAQAAPWFDFALHGRVPARAFRPAPTV 169 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255 ++ P+ P ++ + F R + + L+R + L ++G+ Sbjct: 170 DGGILTIARRRRPLIDPRDRRRYERFVGDVFTGRGRGIAAILRRHADGRRVADALRRSGV 229 Query: 256 ETNLRAENLSIEDFCRI 272 +L + + + Sbjct: 230 GPWALPRDLDVAQWVSL 246 >gi|215445160|ref|ZP_03431912.1| dimethyladenosine transferase [Mycobacterium tuberculosis T85] Length = 209 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 14/184 (7%) Query: 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157 + +L +D E ++P ++ANLPYN+ L + + P +T++ Q E Sbjct: 2 TVSIGTSLALDREDLA--AAPTAVVANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAE 56 Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217 V ER+ A+ S YG SV + + +SP VF+P P+V S ++ + Sbjct: 57 VAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWP 116 Query: 218 CLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIED 268 ++ ++ + AF +RRKT R + + G N L A I+ R E LSI+D Sbjct: 117 TDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDD 176 Query: 269 FCRI 272 F R+ Sbjct: 177 FVRL 180 >gi|188593360|emb|CAO72218.1| ErmX protein [Bifidobacterium animalis] Length = 255 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + K +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|13541146|ref|NP_110834.1| rRNA dimethyladenosine transferase [Thermoplasma volcanium GSS1] gi|14324532|dbj|BAB59459.1| dimethyladenosine transferase [Thermoplasma volcanium GSS1] Length = 237 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 26/258 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 K +GQ FL I + + G +V+EIG G G LT +LL G V +EKD+ Sbjct: 4 SKRLGQVFLRSRRIAEYEVDLLNGHPGDSVLEIGPGHGILTSILLDRG-YYVTAVEKDRF 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + ++ S L + D L + +K+ II N+PY I + ++F + Sbjct: 63 VY---NELLSIKNKNLNLFNMDFLDMPPQKY------DFIIGNIPYYISSDVIFKLYDFE 113 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + ++ QKE +++T N RL V R + + + F P PKV Sbjct: 114 -----FSASVIMVQKEFADKLT---NVKDSSRLYVNAYVRYEIDLKRYVGRKNFNPQPKV 165 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S ++ + L+ L + F K+RK + + E++ N R Sbjct: 166 DSAILLLKKKKINLDIPLDYLDSKLKVMFSKKRKMISNIF-EIYPESM-------GNRRP 217 Query: 262 ENLSIEDFCRITNILTDN 279 +L+ + + +L + Sbjct: 218 SDLTASEILDLVRLLHAH 235 >gi|32470494|ref|NP_863178.1| Erm(X) [Corynebacterium diphtheriae] gi|172041601|ref|YP_001801315.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum DSM 7109] gi|296285265|ref|YP_003657307.1| erythromycin resistance protein [Corynebacterium resistens DSM 45100] gi|300932440|ref|ZP_07147696.1| erythromycin resistance protein [Corynebacterium resistens DSM 45100] gi|20149029|gb|AAM12763.1|AF492560_4 Erm(X) [Corynebacterium diphtheriae] gi|109158265|gb|ABG26481.1| ErmX [Corynebacterium urealyticum DSM 7109] gi|171852905|emb|CAQ05881.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum DSM 7109] gi|296172995|emb|CBL95077.1| erythromycin resistance protein [Corynebacterium resistens DSM 45100] Length = 284 Score = 148 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + K +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRS 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|149003647|ref|ZP_01828512.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] gi|147758379|gb|EDK65379.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] Length = 146 Score = 148 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 7/145 (4%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ D + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116 LT+ L A +V+ E D + PIL D N + ++ +D LKVD + F N + Sbjct: 60 LTEFLAERAA-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117 Query: 117 SPIRIIANLPYNIGTRLLFNWISAD 141 PI+++ANLPY I T +L + I + Sbjct: 118 LPIKVVANLPYYITTPILMHLIESG 142 >gi|289757093|ref|ZP_06516471.1| predicted protein [Mycobacterium tuberculosis T85] gi|289712657|gb|EFD76669.1| predicted protein [Mycobacterium tuberculosis T85] Length = 207 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 14/177 (7%) Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 L +D E ++P ++ANLPYN+ L + + P +T++ Q EV ER+ A Sbjct: 7 LALDREDLA--AAPTAVVANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAA 61 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224 + S YG SV + + +SP VF+P P+V S ++ + ++ ++ Sbjct: 62 EPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRR 121 Query: 225 ----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272 + AF +RRKT R + + G N L A I+ R E LSI+DF R+ Sbjct: 122 RVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 178 >gi|227487333|ref|ZP_03917649.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227543276|ref|ZP_03973325.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092759|gb|EEI28071.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227180946|gb|EEI61918.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 284 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + K +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|167042718|gb|ABZ07438.1| putative ribosomal RNA adenine dimethylase [uncultured marine crenarchaeote HF4000_ANIW133O4] Length = 233 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 28/255 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K +GQ+FL I K I S+ V+EIG G G L L A++V IEKDQ Sbjct: 4 RKNLGQHFLKSKTIAKSIVSSANITRNDFVLEIGTGYGILIPYLCK-NAKQVFSIEKDQN 62 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 K + N L + D D ++NLPY+ +R W+ Sbjct: 63 LHLSAKSNFHDYTN-LVLEYGDGFNSDHNF-------SVFVSNLPYS-KSRFAIEWLLQK 113 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + ++ QKE E++++ + +SVL + + + ++ FFP PKV Sbjct: 114 K----FSRAVIMVQKEFSEKLSSNEKHM---AISVLANYGFRIKFLMNVKKSNFFPMPKV 166 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261 S VI + L + F RRKTL+ LK+ G + R Sbjct: 167 DSVVILLEQKR----IISKVLISTVKRIFSYRRKTLQNILKQFG-------LNSTSKKRL 215 Query: 262 ENLSIEDFCRITNIL 276 + LS ++ +I + Sbjct: 216 DELSGDEIIKIAQKI 230 >gi|118471619|ref|YP_886024.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium smegmatis str. MC2 155] gi|118172906|gb|ABK73802.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium smegmatis str. MC2 155] Length = 386 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 27/269 (10%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+ + +GQNFL D ++ I E +G +IEIGAG G LT L L AR + Sbjct: 5 HHG---RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTA 59 Query: 76 IEKDQQFFPILKDISSQHPNR-----LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 +E D + L +++ E++ D L+ + SP ++ NLP+++ Sbjct: 60 VEVDARRARRLAQRTARSAPGPASRPTEVVAADFLRYPLPR-----SPHVVVGNLPFHLT 114 Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 T +L + P W + LL Q EV R A + ++ + + + Sbjct: 115 TAILRRLL----HGPGWTTAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKV 167 Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK---TLRQSLKRLG 245 S F P P V + ++ P+ + + F R +RQ L Sbjct: 168 SAASFTPRPAVDAGLLTITRRSRPLVDVADRARYQALVHRVFTGRGHGMAQIRQRLPTPV 227 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274 L GI N LS + + Sbjct: 228 PRTWLRANGIAPNSLPRQLSAAQWAALFE 256 >gi|291300090|ref|YP_003511368.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis DSM 44728] gi|290569310|gb|ADD42275.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis DSM 44728] Length = 278 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 25/264 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL + + + SG V+EIG G G LTQ + A +V+ E D Sbjct: 13 RRRLSQNFLTEPRVAAAVVRLSGVTRADLVVEIGPGRGILTQAIA-RKAGRVLAYELDPV 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L P R+ + D L + P I+AN+PY + ++ + A Sbjct: 72 LAKRLAARYGDDP-RVHCVHRDFLSTSPPR-----EPFSIVANIPYARTSAIVEWCLKAR 125 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS---VLTGWRTKATMMFDISPHVFFPS 198 ++ TL+ Q E A+K S YGR S V + R + ++ + + F P Sbjct: 126 E----LDAATLITQLEY-----ARKRSGDYGRWSQVTVESWPRFEWRLLGRVDRYKFDPV 176 Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQ 252 P+V S ++ + ++ F +L SL+R G+ + Sbjct: 177 PRVDSGILRLERRETALLPGSAMADYQRFVALGFTGVGGSLAASLRREFGDRAVRRAFAR 236 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 A + ++ + + L Sbjct: 237 AEVHPAAVVAFVTPPQWIELFTQL 260 >gi|325067303|ref|ZP_08125976.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Actinomyces oris K20] Length = 188 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 10/181 (5%) Query: 73 VIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLP 126 +I +E D L D RL +IQ DAL + P R++ANLP Sbjct: 1 MIAVEIDPALARALPITVADRMPPAAGRLTLIQADALSITGPDSLGDAGHPPTRLVANLP 60 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 YN+ +L + A P ES+T++ Q EV +R+ A+ S YG SV W A Sbjct: 61 YNVAVPVLLTALEA---LPSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAWYAAARR 117 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245 IS HVF+P P V S ++ + P E + + AF +RRKTLR++L RL Sbjct: 118 TLTISRHVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALARLA 177 Query: 246 G 246 G Sbjct: 178 G 178 >gi|307329006|ref|ZP_07608174.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger Tu 4113] gi|306885368|gb|EFN16386.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger Tu 4113] Length = 297 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 19/261 (7%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQNFL+D + ++ ++ G ++E+GAG G LT+ L R++I E D+ P Sbjct: 23 YGQNFLVDPGAVARVVRAARPGPGDLLVEVGAGKGVLTEALAPRC-RELISYEIDRHLIP 81 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L++ +++P ++ ++ D L P ++ N+PY ++ + A Sbjct: 82 GLRERLARYP-QVRVVHQDFL-----DAAPPREPFALVGNVPYARTAEIVAWALRAA--- 132 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 P S TLL Q E + T + L+V + + + ++ F P P V Sbjct: 133 PRLTSATLLTQAEYARKRTGDYG--RWSLLTVRSWPEVEWRLCGRVARAAFRPVPAVDGG 190 Query: 205 VIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIET 257 ++ P+ P + + + F +L SL+R+ + AG+ Sbjct: 191 ILRLTRRPRPLLTDPVARSAYADLVELGFTGLGGSLHASLRRICPARALDRAFRAAGLGR 250 Query: 258 NLRAENLSIEDFCRITNILTD 278 + +S E + + LT+ Sbjct: 251 EVVVAYVSPEQWLVLAQELTE 271 >gi|269986492|gb|EEZ92777.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 264 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 11/213 (5%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL D + +KI ++S VIEIG+G G LT+ + +KV IE D F + Sbjct: 7 FLRDEKVFQKIIQASDLNSEDVVIEIGSGDGRLTKHIAPY-VKKVYAIELDTNLFDSART 65 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + + N +E I DAL ++F N +II+NLPY I + + I Sbjct: 66 LLEDNKN-IEFINGDALDLEFPDDAN-----KIISNLPYAISSPITEKIIYFLNNKKDGL 119 Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 L++Q E GER+ A Y +SV T + ++ +S + F P P V S ++ Sbjct: 120 -AVLMYQLEFGERMLAFPGIRDYSMISVFTQYTCNIKLVSMVSKNAFRPRPAVESILLKV 178 Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241 P I ++ F ++K L +L Sbjct: 179 TPKKISINEDFLEFARLL---FQHKKKNLYSAL 208 >gi|45758647|gb|AAS76623.1| Erm(40) [Mycobacterium mageritense] Length = 251 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 102/261 (39%), Gaps = 21/261 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D ++ I + G +++EIGAG G LT + LG R + IE D++ Sbjct: 8 RHEHGQNFLCDRRVVADIVKIVSHTTG-SIVEIGAGDGALTVPMQRLG-RPLTAIEIDRR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L ++ H ++ D L+ + ++ NLP+++ T +L + Sbjct: 66 RAERLARRTTAH-----VVTADFLRYRLP-----PTEHVVVGNLPFHLTTAILRRLL--- 112 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W LL Q EV R A + ++ + + +S F P P V Sbjct: 113 -HSPAWTDAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKVSADAFRPRPSV 168 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 + ++ P+ + + F R + + Q + + L GI + Sbjct: 169 DAGLLTITRRREPLIDGADRRRYQALVHAVFTGRGRGVAQIVGPRVPRHWLRHNGITPSA 228 Query: 260 RAENLSIEDFCRITNILTDNQ 280 +L+ + + + ++ + Sbjct: 229 LPRDLTAAQWAALFEVTSEAK 249 >gi|239928180|ref|ZP_04685133.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291436510|ref|ZP_06575900.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291339405|gb|EFE66361.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 259 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 21/264 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + + QNFL D ++ A + ++E+GAG G LT +L L R++ E D Sbjct: 8 SRALSQNFLADRATARRFARLAVPHGEPVPLLLEVGAGKGALTDVLAPLC-RELHAYEID 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P L+ S P+ + ++ D L + +P + N+P++ ++ + Sbjct: 67 PRLVPTLRGRFSGTPH-VRVVGADFLAAHPPR-----TPFAVAGNVPFSRTAAVVDWCLR 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A P TLL Q E + T + RL+VLT R + ++ + F P P Sbjct: 121 A----PRLTDATLLTQLEYARKRTGDHG--RWTRLTVLTWPRHEWRLLARVDRRSFRPVP 174 Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253 +V + V+ P+ + + F +L SL R + A Sbjct: 175 RVDAGVVRIERRRVPLLDAAASSRWRHLVDLGFSGVGGSLHASLCRAWPRRRVDAAFRAA 234 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 ++ + ++ E + R+ +L Sbjct: 235 RLDPGVLVGQVAPERWLRLHEVLA 258 >gi|315274531|ref|ZP_07869435.1| dimethyladenosine transferase [Listeria marthii FSL S4-120] gi|313615841|gb|EFR89065.1| dimethyladenosine transferase [Listeria marthii FSL S4-120] Length = 167 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK + FL+D NIL +I +++ VIEIG G G LT+ L A Sbjct: 13 EILKKYGFLFKKSLXXXFLIDTNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126 +V+ E DQ+ PIL D S + N + ++ D LK D E+ F P++I+ANLP Sbjct: 72 EVVAFEIDQRLLPILDDTLSAY-NNVRVVHGDVLKADVEEVIAQQFAKPELPLKIVANLP 130 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 Y + T ++ + + +S+T + QKEV +RI+A Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVP 167 >gi|124028496|ref|YP_001013816.1| dimethyladenosine transferase [Hyperthermus butylicus DSM 5456] gi|123979190|gb|ABM81471.1| Dimethyladenosine transferase [Hyperthermus butylicus DSM 5456] Length = 251 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 14/258 (5%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + ++ +GQ+FL+ + + A + ++E+G G G LT +L + ++ +E Sbjct: 2 LRARRELGQHFLVARWVARIFAGWACRFR--RLLEVGVGQGFLTSTILRSCSVEIAGLEL 59 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L IS + +I DA+ E + + ++PYNI LL + Sbjct: 60 DLRLVGELASISFYFTGFMPVI-ADAV----EPPLRLGGVDAVYGSIPYNITGPLLSLLV 114 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 P LL Q+EV +R+ A+ + YGR++VL + P F P Sbjct: 115 VEARKP-----ALLLLQREVVDRLAAKPGTASYGRITVLVRLVYDVKPGPVVPPSAFRPR 169 Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-IE 256 PKV S ++ +P + P P L ++++T+ F +R K + + G L G + Sbjct: 170 PKVYSRIVELVPRPDAPSPDMLRRVEELTKCMFSERNKRAAKVAAKCIGIELSKIEGLVG 229 Query: 257 TNLRAENLSIEDFCRITN 274 ++R L E F ++ + Sbjct: 230 RDIRVYQLEPEKFIQLLD 247 >gi|296271439|ref|YP_003654071.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM 43833] gi|296094226|gb|ADG90178.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM 43833] Length = 278 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 94/233 (40%), Gaps = 16/233 (6%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 + ++ + ++ + QNF++D + ++ +++ V+E GAG G LT L R Sbjct: 19 ALSKNHNLR-RRALSQNFMIDPRAVARVVDAARLSPDDLVVEPGAGYGALTLALARTC-R 76 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 +VI E D L + P + ++ D L+ + P ++ N+PY++ + Sbjct: 77 RVIAYEIDPVAAGRLAARTRGDPA-VHVVAGDFLRARPPR-----EPFAVVGNIPYHLTS 130 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + A P + TL+ Q E + T + ++V T + I Sbjct: 131 PIVDWCLRA----PALSAATLVTQAEYARKRTGGYG--RWSLVTVRTWPGFIWRIAGRID 184 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK 242 F P P + S ++ P L + + + F R +L SL+ Sbjct: 185 RSAFRPMPSIDSAILRIERRPAPLVPVSALREYRAMVELGFRGRGGSLYASLR 237 >gi|188593358|emb|CAO72217.1| ErmX protein [Bifidobacterium thermophilum] Length = 251 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 26/268 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + L +S +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163 Query: 194 VFFPSPKVTST--VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V VI ++ ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRWVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRI 272 ++ L GI+ L D+ + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDL 251 >gi|159041898|ref|YP_001541150.1| ribosomal RNA adenine methylase transferase [Caldivirga maquilingensis IC-167] gi|157920733|gb|ABW02160.1| ribosomal RNA adenine methylase transferase [Caldivirga maquilingensis IC-167] Length = 273 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 16/249 (6%) Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 +F++D L IA+ + V+E+G G LT L A+ V + + +K Sbjct: 34 HFMVDPVYLNTIAQLA---KDEKVLEVGFGLSYLTHYLAKY-AQHVFACDVNPMMIKAIK 89 Query: 88 DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 I N ++ DAL + +++N+PY+I +RLL Sbjct: 90 AIGLSEVNA-DLFICDALTY------KPPIELTVVSNIPYSITSRLL----LRLLTDYGA 138 Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207 L L Q+EV R+ A+ S YGRLSV+T + ++ + P F+P PKV S ++ Sbjct: 139 RKLILTLQREVALRLAAKPGSTDYGRLSVITQCLSLVKVIKHVPPWAFWPRPKVYSAIVE 198 Query: 208 FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267 P P + +L+ +T + F + K + +K+ G N R LS+ Sbjct: 199 LKPLPKPC-VDVRALESLTSKLFTQPNKKAIKVIKQFYGLREGEAPSYLLNKRVRELSVN 257 Query: 268 DFCRITNIL 276 + + N+L Sbjct: 258 EVAELVNVL 266 >gi|188593355|emb|CAO72215.1| ErmX protein [Bifidobacterium thermophilum] Length = 284 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEYGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E + + K +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVNAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|302554978|ref|ZP_07307320.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM 40736] gi|302472596|gb|EFL35689.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM 40736] Length = 259 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 + + QNFL D ++ A + ++E+GAG G LT L +++ E D Sbjct: 8 SRALSQNFLADRATAERFARLAAPQARPIPLLLEVGAGKGALTVPLA-RHCQELRAYEID 66 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P+L+ S P+ + ++ D L +P + N+P++ ++ + Sbjct: 67 PRLVPVLRGRLSGTPH-VRVVGGDFL-----ALRPPRTPFSVAGNVPFSRTAAVVDWCLR 120 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A P TLL Q E + T ++ L+V + R + ++ + F P P Sbjct: 121 A----PALTDATLLTQLEYARKRTGDYG--NWTLLTVRSWPRYEWLLLGRVDRRDFRPVP 174 Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253 +V + V+ P+ S + + + F +L SL+R + A Sbjct: 175 RVDAGVLRIERRATPLLDEAAYRSWRSLVELGFSGVGGSLHASLRRAHPRRRVDAAFRAA 234 Query: 254 GIETNLRAENLSIEDFCRITNILTD 278 ++ ++ + R+ LT Sbjct: 235 RLDPGALVGEVTPGRWLRLHEALTS 259 >gi|13517628|gb|AAK28907.1|AF338705_1 ErmX [Corynebacterium jeikeium] Length = 284 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNF + I+K I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEHGQNFFTNHKIIKSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + K +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 L + A P W LL Q EV R A + ++ + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRS 163 Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223 Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275 ++ L GI+ L D+ + + Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254 >gi|309798998|ref|ZP_07693255.1| dimethyladenosine transferase [Streptococcus infantis SK1302] gi|308117402|gb|EFO54821.1| dimethyladenosine transferase [Streptococcus infantis SK1302] Length = 140 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 11/136 (8%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEV +RI+A+ N+ YG LS+ + A + F + VF P+P V S ++ + Sbjct: 1 MMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRLP 60 Query: 213 NPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRA 261 P + K+++ +F RRKTL +L G+ L QAG+ ++R Sbjct: 61 EPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRG 120 Query: 262 ENLSIEDFCRITNILT 277 E L +E+F + + L Sbjct: 121 EALGLEEFASLADALK 136 >gi|1169554|sp|P45439|ERMS_STRFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|153253|gb|AAA26742.1| ribosomal RNA N-methyltransferase [Streptomyces fradiae] Length = 319 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 19/265 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 ++ + QNFL + +++A G ++E+GAG G LT+ L R ++ E D Sbjct: 58 RARRELSQNFLARRAVAERVARLVRPAPGGLLLEVGAGRGVLTEALAPYCGR-LVAHEID 116 Query: 80 QQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + P L+D H + I D L + P + N+PY+ ++ + Sbjct: 117 PRLLPALRDRFGGPHHAHVRISGGDFLAAPVPR-----EPFALAGNIPYSRTAGIVDWAL 171 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 A T S T + Q E + T + L+V T R + ++ +S F P Sbjct: 172 RART----LTSATFVTQLEYARKRTGDYG--RWSLLTVRTWPRHEWRLLGRVSRREFRPV 225 Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQ 252 P+V S ++ P L ++ + F +L SL+R + Sbjct: 226 PRVDSGILRIERRERPLLPSAALGDYHRMVELGFSGVGGSLYASLRRAHRAGPLDAAFRA 285 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 A ++ ++ ++ E + + L Sbjct: 286 ARLDRSVVVAYVTPEQWLTVFRTLR 310 >gi|320100239|ref|YP_004175831.1| ribosomal RNA adenine methylase transferase [Desulfurococcus mucosus DSM 2162] gi|319752591|gb|ADV64349.1| ribosomal RNA adenine methylase transferase [Desulfurococcus mucosus DSM 2162] Length = 278 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 116/277 (41%), Gaps = 24/277 (8%) Query: 7 SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S +L+ +L + + P++ + QNF++D +LK + LD EIG G G LT L Sbjct: 17 SWTLR-VLQSHGLKPRRRLSQNFIVDPALLKGFTRNVEYLDT---FEIGCGIGTLTMSLS 72 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 R +I +E D + + + + ++ DA +++ N+P Sbjct: 73 RFVPR-LICVEIDWRLLE--AAVENIDAANVVLVNADATVYT-------PPSKQVVGNIP 122 Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 Y+I + + ++ Q++V ERITA YGR+++L + + Sbjct: 123 YHITSEI----LTGVARLNTVTRAVFTVQRDVAERITAAPGDRRYGRITILLNALFEIKV 178 Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 F+P P V ++I + P +E+L+ +T+ F +RR+ + L+R+ G Sbjct: 179 AGTYGSSSFYPEPGVEHSIIVMVRRA-PFNRDVEALEALTRAVFTQRRRIALRVLERVLG 237 Query: 247 ENL-----LHQAGIETNLRAENLSIEDFCRITNILTD 278 + + + R + E + + L + Sbjct: 238 VREDSPVHSYASRLLGGKRVYEVGWEVYLELARALRE 274 >gi|3800833|gb|AAC69328.1| rRNA methyltransferase PikR1 [Streptomyces venezuelae] Length = 336 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 22/260 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL D ++ + DG V+EIG G G +T+ L+ V V+E D Sbjct: 17 RRELGQNFLQDDRAVRNLVTHVE-GDGRNVLEIGPGKGAITEELV-RSFDTVTVVEMDPH 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + ++ R+ + Q D L + + ++ N+P+ I T++L + + + Sbjct: 75 WAAHVRRKFEG--ERVTVFQGDFLDFRIPRDIDT-----VVGNVPFGITTQILRSLLEST 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 W +S L+ Q EV + + L+ + + + F P P+V Sbjct: 128 NW----QSAALIVQWEVARKRAGRSGG---SLLTTSWAPWYEFAVHDRVRASSFRPMPRV 180 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GI 255 V+ P + + + F + L + L+R + GI Sbjct: 181 DGGVLTIRRRPQPLLPESASRAFQNFAEAVFTGPGRGLAEILRRHIPKRTYRSLADRHGI 240 Query: 256 ETNLRAENLSIEDFCRITNI 275 ++L++ + + Sbjct: 241 PDGGLPKDLTLTQWIALFQA 260 >gi|28493170|ref|NP_787331.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist] gi|28476210|gb|AAO44300.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist] Length = 448 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 9/180 (5%) Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 + +I DDALK+ +P ++ANLPYNI L+ + + P S T++ Sbjct: 262 GEVYLINDDALKLRALPI----TPKMLVANLPYNIAVPLIMHVLQQ---FPSIVSATIML 314 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 Q EV +RI A+ S G ++ W + ++ HVF+P P V S ++ FI Sbjct: 315 QSEVADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKS 374 Query: 215 I-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 E+ + ++AF KRRK LRQSL+ + + AGI+ LRAENLS+++F + Sbjct: 375 DCEVLREATFSLIEDAFSKRRKMLRQSLRYI-PQADFVAAGIDPMLRAENLSVDNFMNLA 433 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +P K GQ+F+ D NI KI +G G V+EIG G G LT L A V +E Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71 Query: 78 KDQQFFPIL 86 D + F L Sbjct: 72 IDTRLFNAL 80 >gi|56807419|ref|ZP_00365386.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Streptococcus pyogenes M49 591] Length = 136 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 7/139 (5%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M + + S + K +L + KK GQNFL D NIL+KI +++ + VIEIG G G Sbjct: 1 MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116 LT+ L A +V+ E D + PIL D N ++++ D LK D ++F N Sbjct: 60 LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIQQFKNPD 117 Query: 117 SPIRIIANLPYNIGTRLLF 135 PI+++ANLPY I T +L Sbjct: 118 LPIKVVANLPYYITTPILM 136 >gi|256395256|ref|YP_003116820.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila DSM 44928] gi|256361482|gb|ACU74979.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila DSM 44928] Length = 263 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 105/263 (39%), Gaps = 22/263 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ +GQNFL D ++ +I +IE+GAG G LT L L R V +E D + Sbjct: 17 RQELGQNFLADPALIAEIQRLVREQTQGPIIELGAGDGALTGPLSRLN-RPVTALEIDPR 75 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L++ R ++++ D L+ F + I+ N+P+++ T ++ +S Sbjct: 76 RVRRLQERFG---GRADVVRADVLRYRFPA-----AEHTIVGNIPFHLTTAIIRKLLSER 127 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 W S L+ Q EV R + L+ ++ I F P P V Sbjct: 128 ----GWSSAVLIVQWEVARRRAGVGGA---SMLTASWWPWYDFGLVRRIPASAFRPVPSV 180 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255 + ++ P+ + ++ F + + + + R G + + I Sbjct: 181 DAGLLTMWRRPVPLVEERSGYQTFVKQVFQAPGRGVEEMIARTGRVRRAELREWVRWSRI 240 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 ++L+ ED+ R+ ++ D Sbjct: 241 PVRALPKDLAAEDWARLWELVRD 263 >gi|159039573|ref|YP_001538826.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola CNS-205] gi|157918408|gb|ABV99835.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola CNS-205] Length = 269 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 29/267 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL+D + ++ ++ ++E+GAG G LT+ LL +R++I E D Sbjct: 15 RRVLSQNFLVDPAAVDRLIRAARPDPNRLLLEVGAGRGQLTR-LLAARSRRLIAYEVDPV 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P + + D L + P ++ N+P+++ + ++ ++A Sbjct: 74 AGAELARTCADLP-TVTCRRADFLTAPPPRV-----PYDVVGNIPWSLTSAVVRWCLAA- 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + TLL Q E + + + RL+VL + + F P P+V Sbjct: 127 ---SGLRAATLLTQLEYARKRSGAYG--RWTRLTVLNWPEFSWRLAGRVPRTAFRPVPRV 181 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 + ++ P L + +++ + F +L SL R L A L Sbjct: 182 NAGILRIERRREPLLPGAALPAYRRMVELGFDGAGGSLAASLGRRYPRARLTAA-----L 236 Query: 260 RAENLS---------IEDFCRITNILT 277 RA L E + + +L Sbjct: 237 RATRLDPATPVGHVWPEQWLVLFRLLR 263 >gi|28572717|ref|NP_789497.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27] gi|28410849|emb|CAD67235.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27] Length = 418 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 9/180 (5%) Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 + +I DDALK+ +P ++ANLPYNI L+ + + P S T++ Sbjct: 232 GEVYLINDDALKLRALPI----TPKMLVANLPYNIAVPLIMHVLQQ---FPSIVSATIML 284 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 Q EV +RI A+ S G ++ W + ++ HVF+P P V S ++ FI Sbjct: 285 QSEVADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKS 344 Query: 215 I-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273 E+ + ++AF KRRK LRQSL+ + + AGI+ LRAENLS+++F + Sbjct: 345 DCEVLREATFSLIEDAFSKRRKMLRQSLRYI-PQADFVAAGIDPMLRAENLSVDNFMNLA 403 Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + +P K GQ+F+ D NI KI +G G V+EIG G G LT L A V +E Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71 Query: 78 KDQQFFPIL 86 D + F L Sbjct: 72 IDTRLFNAL 80 >gi|297156444|gb|ADI06156.1| rRNA-adenine-N6-methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 277 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 16/236 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 ++ + QNFL+D + ++ ++ ++E+G G G LT+ L R++I E D+ Sbjct: 23 ARRTLSQNFLVDPAAVARVVRAARPRHDGLLVEVGMGKGALTEALAPRC-RELIGYEIDR 81 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 P L+ + H + + ++ D L P ++ N+PY + ++ + A Sbjct: 82 HLIPGLRLRLAAHSH-VRVVHQDFLTARPPL-----EPFAVVGNVPYARTSEIVDWCLRA 135 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P S T L Q E + T + L+V + + + F P P+ Sbjct: 136 ----PRLTSATFLTQLEYARKRTGDYG--RWSLLTVRSWPDFDWQLCGRVPRGAFRPVPR 189 Query: 201 VTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 V S ++ P+ + +++ + F TL SL+R L +A Sbjct: 190 VDSGILRLTRRPRPLLTGAAERAAYERMVELGFSGVGGTLYASLRRAHPARRLDRA 245 >gi|115400783|ref|XP_001215980.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624] gi|114191646|gb|EAU33346.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624] Length = 287 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 11/189 (5%) Query: 82 FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P RL++I D +K + F I+N PY I + L F ++ Sbjct: 1 MAAEVTKRVQGTPAQKRLDVILGDFMKTELPYF------DVCISNTPYQISSPLTFKLLA 54 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P L+FQ+E R+ A+ Y RLSV K + + + F P P Sbjct: 55 TTPAP---RVCILMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPP 111 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S+V+ +P E + + F ++ KT+R S L +A T Sbjct: 112 LVDSSVVRLVPKNPRPQINYEEWDGLLRICFVRKNKTIRSSFLGKHTVMDLLEANYRTWC 171 Query: 260 RAENLSIED 268 ++ +ED Sbjct: 172 AQNDIPVED 180 >gi|213581623|ref|ZP_03363449.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 152 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 14/165 (8%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121 + + K+ VIE D+ L+ +L I Q DA+ ++F + + P+R+ Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 NLPYNI T L+F+ S + + + QKEV R+ A Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGP 152 >gi|171694431|ref|XP_001912140.1| hypothetical protein [Podospora anserina S mat+] gi|170947164|emb|CAP73969.1| unnamed protein product [Podospora anserina S mat+] Length = 386 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 15/183 (8%) Query: 75 VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 ++ D + + P +LE+I D +K+ + +I+N PY I + Sbjct: 77 SVDIDPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSP 131 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 L+F ++ P L+FQ+E +R+ A+ Y RLSV + + + Sbjct: 132 LIFKMLAMPNPP---RVAVLMFQREFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGK 188 Query: 193 HVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 F P PKV S V+ P + + + AF ++ KTL S + +L Sbjct: 189 QNFKPPPKVESDVVRIEPLIGSARPNIAFDEFDGLLRIAFNRKNKTLNASF---AIKEVL 245 Query: 251 HQA 253 Sbjct: 246 AMC 248 >gi|54024690|ref|YP_118932.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia farcinica IFM 10152] gi|54016198|dbj|BAD57568.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia farcinica IFM 10152] Length = 269 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 15/224 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 QNFL D +I ++I S+G G V+EIG G G LT LL + A +V+ E D ++ Sbjct: 17 FSQNFLADADIARRIVRSAGVGAGDLVLEIGPGDGMLTAQLLGV-AGRVLAYEIDARYAA 75 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L+ + H R+ D P ++AN+P+ T ++ ++A Sbjct: 76 RLQARYA-HDPRIHCYHKDF-----RDAPLPDEPFGVVANVPFGSTTDIVRWCLAARQ-- 127 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 S TLL Q+E + T + +L+V T + I F P P+V Sbjct: 128 --LTSATLLTQREFARKHTGDYG--RWSKLTVTHWPTTTMHLGARIDRRHFRPVPRVDGA 183 Query: 205 VIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 ++H +P+ +++ + F +L +L Sbjct: 184 LLHLRRRPDPLLAGAAARDYRRLVELGFTGVGGSLAATLATAFP 227 >gi|289670944|ref|ZP_06492019.1| dimethyladenosine transferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 152 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 KK +GQ+FL D + +I ++ G ++EIG G G +T LL + VIE D+ Sbjct: 9 AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L + ++ L II D L VDF + +PIR++ NLPYNI + +LF+ + Sbjct: 68 DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSP 169 + + QKEV +R+ A SP Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSP 151 >gi|329944089|ref|ZP_08292348.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328530819|gb|EGF57675.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 267 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 102/271 (37%), Gaps = 26/271 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D +I+ I + +G ++EIG G G LT L LG R V IE D + Sbjct: 8 RHEYGQNFLTDQSIIATITRLVVATEG-PIVEIGPGDGALTIPLARLG-RPVTAIEIDAR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P+ ++++ DD L + P ++ NLP++ T +L + A Sbjct: 66 LARCLSERL---PSHVDVVSDDFLIYRLPTY-----PHVLVGNLPFHQTTAMLRRMLHA- 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W + LL Q EV R + ++ + T+ + F P P V Sbjct: 117 ---PVWTNAILLVQWEVARRRAGLGGATM---MTAQWAPWFEFTLHARVPSRAFTPRPGV 170 Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL-------GGENLLHQ 252 ++ +P+ + + L Q L R + L + Sbjct: 171 DGGILTIYRREHPLLPSTQRRQFHALVHRVYTGPGCGLAQILARNTALGSARAAQAWLSR 230 Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283 G+ ++L +E + + Q A Sbjct: 231 HGMTATGLPKDLPVEAWVDLFKATAHRQRNA 261 >gi|225680654|gb|EEH18938.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb03] Length = 291 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 19/193 (9%) Query: 82 FFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + P RLE++ D +K D F I+N PY I + L F ++ Sbjct: 1 MAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLA 54 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + P L+FQ+E R+ A+ Y RLSV + + + + F P P Sbjct: 55 TNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHIMKVGKNNFKPPP 111 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S+V+ +P + + + AF ++ KT+R S LG ++L +E+N Sbjct: 112 AVESSVVRIVPKNPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGTTSVLD--MLESNY 167 Query: 260 RA----ENLSIED 268 R N+ +ED Sbjct: 168 RTWCAQNNIPVED 180 >gi|854706|gb|AAC37034.1| rRNA methyltransferase [Bacteroides thetaiotaomicron] Length = 244 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 22/253 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + + L++L +++ I + F P PKV ST+ Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264 I P + KK E F K + + ++L +N ++A + N+ Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227 Query: 265 SIEDFCRITNILT 277 S E F + N Sbjct: 228 SFEQFVSLFNSYK 240 >gi|145596181|ref|YP_001160478.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica CNB-440] gi|145305518|gb|ABP56100.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica CNB-440] Length = 265 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 29/267 (10%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ + QNFL+D + ++ ++ ++E+GAG G LT+ LL +R +I E D Sbjct: 15 RRVLSQNFLVDPAAVNRLTRAAQPDPDRLLLEVGAGRGQLTR-LLAARSRHLIAYEVDPV 73 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + P + Q D L + +P ++ N+P+++ + ++ ++A Sbjct: 74 NAAELARSCAGLP-TVTCRQADFLTASPPR-----APFDVVGNIPWSLTSAVVRWCLAA- 126 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P + TLL Q E + + + RL+V + + + F P+P+V Sbjct: 127 ---PGLRAATLLTQLEYARKRSGDYG--RWTRLTVRSWPEFSWRLAGRVPRTAFRPTPRV 181 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 + ++ P L + +++ + F +L SL R + A L Sbjct: 182 DAGILRIERRREPLLPVAALPAYRRMVELGFDGVGGSLAASLGRRHPRVRVAAA-----L 236 Query: 260 RAENLS---------IEDFCRITNILT 277 RA L E + + +L Sbjct: 237 RATRLDPAPPVGQVWPEQWLALFRLLR 263 >gi|134285024|gb|ABO69573.1| rRNA methyltransferase [pGERM gene disruption vector] Length = 244 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 22/253 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAGLVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + + L++L +++ I + F P PKV ST+ Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264 I P + KK E F K + + ++L +N ++A + N+ Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227 Query: 265 SIEDFCRITNILT 277 S E F + N Sbjct: 228 SFEQFVSLFNSYK 240 >gi|33468439|emb|CAD89787.1| ErmG [Bacteroides ovatus] Length = 244 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 26/255 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + P Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSAPI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + + L++L +++ I + F P PKV S + Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262 I P + KK E F K + + ++L +N ++A R Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225 Query: 263 NLSIEDFCRITNILT 277 N+S E F + N Sbjct: 226 NISFEQFVSLFNSYK 240 >gi|256784390|ref|ZP_05522821.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces lividans TK24] gi|289768269|ref|ZP_06527647.1| lincomycin resistance methylase [Streptomyces lividans TK24] gi|153346|gb|AAA26779.1| lincomycin resistance methylase [Streptomyces lividans] gi|289698468|gb|EFD65897.1| lincomycin resistance methylase [Streptomyces lividans TK24] Length = 260 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 113/267 (42%), Gaps = 28/267 (10%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNFL D +++A + G ++E+GAG G LT+ L +R++ E D Sbjct: 9 RTLSQNFLADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P L+ ++ P+ + ++ D L + +P + N+P++ ++ ++A Sbjct: 68 RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSRTADIVDWCLTA 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197 P TLL Q E A+K + YGR L+VLT R + ++ + F P Sbjct: 122 ----PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250 +P+V + ++ + + + F +L SL+R + Sbjct: 173 APRVDAGILRIERRPTALLTGAAARRDWADLVELGFSGVGGSLHASLRRAHSRRRVDAAF 232 Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277 A ++ + ++ + + R+ LT Sbjct: 233 RAARLDPGVLVGEVAPDRWLRLHEELT 259 >gi|224026271|ref|ZP_03644637.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM 18228] gi|224019507|gb|EEF77505.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM 18228] Length = 244 Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 22/253 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + + L++L +++ I + F P PKV S + Sbjct: 123 SYLIVEYGFAKGLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264 I P + KK E F K + + ++L +N ++A + N+ Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227 Query: 265 SIEDFCRITNILT 277 S E F + N Sbjct: 228 SFEQFVSLFNSYK 240 >gi|84996089|ref|XP_952766.1| rDNA dimethyladenosine transferase [Theileria annulata strain Ankara] gi|65303763|emb|CAI76140.1| rDNA dimethyladenosine transferase, putative [Theileria annulata] Length = 569 Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 130/379 (34%), Gaps = 135/379 (35%) Query: 26 GQNFLLDLNILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLG----------- 69 G NF+ DLN++ K+ S S DG VIE+G G G+LT +L Sbjct: 138 GGNFITDLNLMYKMCNSLQHYSEDSGDGSQVIELGCGIGSLTHILYKKYKNMTGTVLDFY 197 Query: 70 --------------------------------------ARKVIVIEKDQQFFPILKDISS 91 +R IE D + L Sbjct: 198 NYIAIRPKGTSNYTAIHFKYLVSSLSRSTLCNHRISSLSRSTKRIEIDSRAVSQLSRTLP 257 Query: 92 QHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 L II D L++D+++ N I + II NLP+ I +++L + + + + Sbjct: 258 ----NLNIINQDVLQMDYKELSNRIGKKLWIIGNLPFYITSQILMCLLD---YRKYIDRA 310 Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 + Q EV ER+ A S Y LSVLT T ++F +S +VF+P PKV S IH Sbjct: 311 VITAQWEVAERLVAPVGSKQYSILSVLTQMFTTPKILFKLSNNVFYPKPKVQSACIHLDF 370 Query: 211 ----------------------------------------HLNPIPCCL----------- 219 P Sbjct: 371 NTSISTKSNSIEGKGANSTAMECTSTNSTNTEDTSNINNIKETPFGVKEVPFGDGRGPDT 430 Query: 220 --ESLKKI------TQEAFGKRRKTLRQSLKRL-------GGENLLHQAGIETNLRAENL 264 E LK + + F ++RK L+ SL L EN+L LR +NL Sbjct: 431 VMEELKNVMLLREILRITFNQKRKKLKTSLANLLNKYNIKLPENVLE-------LRPQNL 483 Query: 265 SIEDFCRITNILTDNQDIA 283 S +F +TN + + ++ Sbjct: 484 SPSNFITLTNYIHKHINLG 502 >gi|157363926|ref|YP_001470693.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae TMO] gi|157314530|gb|ABV33629.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae TMO] Length = 248 Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 26/250 (10%) Query: 25 MGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 GQ+FL D + K+ E + V+EIGAG G +T LL G +V+ E DQ+ Sbjct: 4 YGQHFLNDKSTAIKLVELISHDVSNRRVVEIGAGKGFITGFLLQAG-FQVLAYEIDQKLA 62 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + L++ D L+ E+ NI+ I ++PY I ++++ I Sbjct: 63 KQLCQKFA--SPGLKVYVKDFLQSTPEEIENIN---LCIGSIPYQISSKIIIKLIELG-- 115 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 ++ + L+ QKE E++ A+ Y ++VL + ++ F P+PKV S Sbjct: 116 ---FQKVVLIVQKEFAEKLVAEPGEKRYSFITVLAQSFYDVQKVSNLPKSCFSPAPKVDS 172 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 ++ N + ++ ++ F K + + + R Sbjct: 173 AILSMC--RNHVSIKIDEYILFLRKIFVSPNKMVHNMIHSAIKK------------RVRE 218 Query: 264 LSIEDFCRIT 273 L ++F R+ Sbjct: 219 LPADEFLRLF 228 >gi|294936255|ref|XP_002781681.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] gi|239892603|gb|EER13476.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] Length = 913 Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDDALK 106 TV+E+G G GN++ L L A +V+ +E ++ ++ + + + +E++ D + Sbjct: 546 TDTVLEMGPGTGNMSVKLSEL-ANRVVAMEVNEGLAKEVERRAEMKGASNMEVVTGDFKR 604 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 + +F +IANLPY++ T L + + + ++ Q E G+++ A Sbjct: 605 LALPRF------DVVIANLPYHLATGFLLKLMGHP-----FRTGIIMLQHEFGKKLLADP 653 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226 Y RLS+ KA + + FFP P+ TS +I P + + Sbjct: 654 GEKIYSRLSLNMRMFFKAERICKVPGRAFFPQPQTTSVIIRLTPRVPAPKVDFAEWDAMI 713 Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQ 252 + AF ++ + + + KRL N+L Sbjct: 714 RIAFFRKNQDVFKMFKRLTVLNMLEH 739 >gi|168064371|ref|XP_001784136.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664336|gb|EDQ51060.1| predicted protein [Physcomitrella patens subsp. patens] Length = 274 Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 31/218 (14%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSL--------DGITVIEIGAGPGNLTQMLLTL 68 +I +K GQ+ L + + + + + + L ++++ GNLT LL + Sbjct: 70 QEIQFQKSKGQHILKNPLLRRSLFKKTSLLFSTIRVSYADVSLL-----LGNLTMKLLEV 124 Query: 69 GARKVIVIEKDQQFFPILKDISSQHP--NRLEI-----IQDDALKVDFEKFFNISSPIRI 121 KVI +E D + + P N+L++ IQ LK + F Sbjct: 125 C--KVIAVELDPRMVLEVTRRVQGTPCANKLQVWMLAVIQCYILKTELPYF------DVC 176 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +AN+PY I + + F +S PP +LFQ+E + + AQ + RLS T Sbjct: 177 VANVPYMISSPITFKLLS---HPPLVRCAVILFQEEFAQHLVAQPGDSLFCRLSANTQLL 233 Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + + + P PKV S+V+ P P Sbjct: 234 ARVFHLLKVGKNNLRPPPKVDSSVVRIEPRNPLPPINF 271 >gi|127197|sp|P06571|ERMG_BACSH RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|142884|gb|AAA22419.1| rRNA methyltransferase [Lysinibacillus sphaericus] Length = 244 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 22/253 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + + L++L +++ I + F P PKV S + Sbjct: 123 SYLIVEYGFAKRLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264 I P + KK E F K + + ++L +N ++A + N+ Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227 Query: 265 SIEDFCRITNILT 277 S E F + N Sbjct: 228 SFEQFVSLFNSYK 240 >gi|307213901|gb|EFN89152.1| Dimethyladenosine transferase 1, mitochondrial [Harpegnathos saltator] Length = 294 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 26/238 (10%) Query: 66 LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF--------- 113 + +++++EKD++F P IL D + +++II DD ++ E F Sbjct: 1 MKRLPERIVLVEKDKRFEPTLDILADSFAMINRKVDIIFDDIMRAHIESLFPKEKKMNWN 60 Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNS 168 + + +I NLP+N+ T L+ W+ W +TL FQKEV ER+ A ++S Sbjct: 61 DKPPDLFLIGNLPFNVSTPLIIQWLHSIAERRGAWAFGRTKMTLTFQKEVAERLVAPESS 120 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQ 227 RLSV+ T + F I HVF P P V V+ F P P + +KI + Sbjct: 121 EQRCRLSVMAQAWTFPVLRFVIPGHVFVPQPDVDVGVVSFTPLTKPCTQHDFKFFEKIVR 180 Query: 228 EAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILT 277 F R+K + ++ L + + + ++ +R L++ D R+ Sbjct: 181 HVFSFRQKYSIRCVETLFPLHCRKELAMMMYKLSDLDPTIRPTQLTVNDIDRLATAYK 238 >gi|269124773|ref|YP_003298143.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM 43183] gi|268309731|gb|ACY96105.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM 43183] Length = 313 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 95/264 (35%), Gaps = 21/264 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 ++ + QNFL D + + G V+E+GAG G +T+ L A VI E D Sbjct: 19 RRSLSQNFLADPAAIGRYVRVVTRDLPGGALVVEVGAGDGRITRALAAH-AGAVIAYEID 77 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L N + + D L + P + ++PY +R++ Sbjct: 78 PVLAGRLHAACRPLGN-VRCVPGDFL-----SARPPARPFHLTGSIPYAATSRIMDW--- 128 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 P S TL+ Q E + T + RL+VLT + I F P P Sbjct: 129 -ALAAPSLASATLITQLEYALKRTG--GYRRWSRLTVLTWPVFTWRLAGRIDRRAFRPVP 185 Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253 +V S ++ P P ++ + FG R TL SL+ + A Sbjct: 186 RVDSAILRIERRERPLLPPGLPAGYRRCVEIGFGGRGGTLHASLRGAYPRSRVDAAFEAA 245 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 G+ + + + + R+ L Sbjct: 246 GLGRDTVVAYVHPDQWVRLFKALR 269 >gi|153006650|ref|YP_001380975.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5] gi|152030223|gb|ABS27991.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5] Length = 356 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 12/167 (7%) Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 I ++ NLPY++ + +LF+ + L Q+EV ER+ A S +G SVL Sbjct: 191 IAVVGNLPYHLTSPILFSLLDQLEH---VSRAVFLLQREVAERLAAPPGSRDWGVASVLL 247 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRK 235 ++ + F P P V S V+ I +++ + F +RRK Sbjct: 248 QREADVSVERIVPSGAFVPPPNVDSAVLCAIFRPPGEGLAVADPGRFRRLVKAGFAQRRK 307 Query: 236 TLRQSLK--RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276 TL +L+ ++ E L AG++ R E L++E++ + L Sbjct: 308 TLGNALRAGKVVPEEALSRALQAAGLDPGRRGETLTVEEWAALDRAL 354 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 S + +L Y + KK GQNFL D IL IA + G V+E+GAG G+LT LL Sbjct: 13 PSPRALLDKYGLRAKKSWGQNFLGDEAILDDIARLAAPRPGDPVVELGAGLGHLTARLLA 72 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 GA +VI +E+D+ +L+ + +RL +++ DA ++D+ + Sbjct: 73 RGA-EVIAVERDRDMVRVLR---GELGDRLRLLEADAARLDYGEVA 114 >gi|124806998|ref|XP_001350883.1| apicoplast dimethyladenosine synthase, putative [Plasmodium falciparum 3D7] gi|23497013|gb|AAN36563.1| apicoplast dimethyladenosine synthase, putative [Plasmodium falciparum 3D7] Length = 639 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 25/249 (10%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 DG VIE+G G G +++ L + + IE D + I+ + I DD L Sbjct: 386 NDGNGVIELGCGLGQISKYLF-SKYKNMTGIEIDSRALSIISRTMPG----FDFIHDDVL 440 Query: 106 KVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 ++++++ N + + II NLP+ I +++LF + + E + Q EVGERI A Sbjct: 441 QINYKELSINKKTKLTIIGNLPFYITSQILFCLLDFHK---YIEQAIVTIQYEVGERIVA 497 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCL 219 + N +Y LS+L T ++F I F+P PKV + V+ I + I C L Sbjct: 498 KPNQKNYSILSILFHLFTYPYLLFKIPSKAFYPVPKVQAAVMKIIFKNHESYYKHINCNL 557 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET------NLRAENLSIEDFCRIT 273 LKKI + +F +RR + + LL Q I NLR + L F +T Sbjct: 558 LFLKKILKYSFQQRR-----KKLKSSLKKLLIQYNIPKLPEQFINLRPQQLYPYQFVELT 612 Query: 274 NILTDNQDI 282 N+L Q+ Sbjct: 613 NLLFPLQNY 621 Score = 46.3 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG 44 LKT L + PK+ +GQN+L D NI+KK+ + Sbjct: 188 LKTKLPSKEFKPKRSLGQNYLKDTNIIKKMISAIE 222 >gi|317480612|ref|ZP_07939700.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36] gi|316903238|gb|EFV25104.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36] Length = 244 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 26/255 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + + L++L +++ I + F P PKV S + Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262 I P + KK E F K + + ++L +N ++A R Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225 Query: 263 NLSIEDFCRITNILT 277 N+S E F + N Sbjct: 226 NISFEQFVSLFNSYK 240 >gi|255690866|ref|ZP_05414541.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM 17565] gi|260623500|gb|EEX46371.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM 17565] Length = 244 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 26/255 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I N+PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGNIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + E A+ L++L +++ I + F P PKV S + Sbjct: 123 SYL---------IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262 I P + KK E F K + + ++L +N ++A R Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225 Query: 263 NLSIEDFCRITNILT 277 N+S E F + N Sbjct: 226 NISFEQFVSLFNSYK 240 >gi|21224418|ref|NP_630197.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces coelicolor A3(2)] gi|13276816|emb|CAC33934.1| putative antibiotic resistance rRNA adenine methyltransferase [Streptomyces coelicolor A3(2)] Length = 260 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 113/267 (42%), Gaps = 28/267 (10%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNFL D +++A + G ++E+GAG G LT+ L +R++ E D Sbjct: 9 RTLSQNFLADRATAERVAHLAVPDRGRRPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P L+ ++ P+ + ++ D L + +P + N+P++ ++ ++A Sbjct: 68 RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSRTADIVDWCLTA 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197 P TLL Q E A+K + YGR L+VLT R + ++ + F P Sbjct: 122 ----PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250 +P+V + ++ + + + F +L SL+R + Sbjct: 173 APRVDAGILRIERRPTALLTGAAARRDWADLVELGFSGVGGSLHASLRRAHSRRRVDAAF 232 Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277 A ++ + ++ + + R+ LT Sbjct: 233 RAARLDPGVLVGEVAPDRWLRLHEELT 259 >gi|228994|prf||1815179A rRNA methyltransferase Length = 260 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 113/267 (42%), Gaps = 28/267 (10%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNF+ D +++A + G ++E+GAG G LT+ L +R++ E D Sbjct: 9 RTLSQNFIADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P L+ ++ P+ + ++ D L + +P + N+P++ ++ ++A Sbjct: 68 RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSRTADIVDWCLTA 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197 P TLL Q E A+K + YGR L+VLT R + ++ + F P Sbjct: 122 ----PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172 Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250 +P+V + ++ + + + F +L SL+R + Sbjct: 173 APRVDAGILRIERRPTALLTGAAARRDWADLVELGFSGVGGSLHASLRRAHSRRRVDAAF 232 Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277 A ++ + ++ + + R+ LT Sbjct: 233 RAARLDPGVLVGEVAPDRWLRLHEELT 259 >gi|296138265|ref|YP_003645508.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola DSM 20162] gi|296026399|gb|ADG77169.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola DSM 20162] Length = 253 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 93/254 (36%), Gaps = 38/254 (14%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D I+ I DG ++EIG G G LT L LG R + V+E D++ Sbjct: 8 RHEHGQNFLTDRRIIASILNIIAESDG-PILEIGPGAGALTVPLANLG-RPLTVVEIDEK 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + L+ I+ D L+ P ++ NLP+++ T +L + A Sbjct: 66 YVHALRRTRLDA----TIVHGDFLRHRLPD-----EPATVVGNLPFHLTTAILRKLLHA- 115 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDISPHVFFPSP 199 P W L+ Q EV R S + W + ++ + F P P Sbjct: 116 ---PHWTDAVLITQWEVARRRAGVGGSTL-----MTAQWLPWYEFRLIRRLPATAFTPRP 167 Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 V + ++ +P + F R + L L AGI Sbjct: 168 GVDAGLLTVTRRPDPLMPWSARRAYAAFAHAVFTGRGRGLAAIL-----------AGITR 216 Query: 258 NLRAENLSIEDFCR 271 RA ++E + Sbjct: 217 RDRA---TVERWVA 227 >gi|297561218|ref|YP_003680192.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845666|gb|ADH67686.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 266 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 14/207 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ QNFL D +++ SG V+E+G G G LT+ L AR+V+ E D + Sbjct: 16 RRRFSQNFLADPGAARRVVAVSGIGPADLVVEVGPGEGALTRFLAP-AARRVLAYEIDPR 74 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + + + +++ D +V + ++ N+PY ++ + A Sbjct: 75 LAERLSARYREPASGVRVVRADFTRVRPPR-----GEFHLVGNIPYARTADIVRWCLDAR 129 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 S TL+ Q E + T + RL+VLT ++ I F P P+V Sbjct: 130 ----GLASATLVTQLEYARKRTGGFG--RWSRLTVLTWPEWSWSLAGRIDRQRFRPVPRV 183 Query: 202 TSTVIHFIPHLNPI--PCCLESLKKIT 226 S ++ P+ P + +++ Sbjct: 184 DSGILVLRRRRTPLVDPGRMNGYRRLV 210 >gi|271965962|ref|YP_003340158.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum DSM 43021] gi|270509137|gb|ACZ87415.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum DSM 43021] Length = 275 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 17/223 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 ++ + QNF++D + + +I E++G V+E GAG G LT+ L +V+ E D Sbjct: 28 QARRTLSQNFIVDPDAVARIVEAAG--PHDLVLEPGAGEGVLTRALAGTCG-QVVGYEVD 84 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L + R+ +++ D L P ++ N+PY+I ++++ + Sbjct: 85 PLLAGRLAARTRD-DARIRVVRGDFL-----AARAPREPFAVVGNIPYSITSKIVDWCLR 138 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 A P S TL Q E + T + L+V T ++ +S VF P P Sbjct: 139 A----PDLTSATLTTQLEYARKRTGDFG--RWSMLTVQTWPWYSWELLGHLSREVFRPIP 192 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S ++ L F +L +++ Sbjct: 193 AVDSAILRIERRSQAP--DLPGYHAFVDYGFTGLGGSLHATMR 233 >gi|119559|sp|P16898|ERMA_CORDI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|15778309|gb|AAL07369.1|AF411029_2 ErmX [Propionibacterium acnes] gi|40437|emb|CAA35836.1| unnamed protein product [Corynebacterium diphtheriae] gi|45564|emb|CAA40590.1| erythromycin methyltransferase [Corynebacterium diphtheriae] Length = 253 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 23/236 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + K +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDIS 191 L + A P W LL Q EV R A + + W + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM----MTAQWSPWFTFHLGSRVP 161 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245 F P P V ++ +P IP ++ + + F R + + + L+R G Sbjct: 162 RSAFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRQG 217 >gi|269839605|ref|YP_003324297.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC BAA-798] gi|269791335|gb|ACZ43475.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC BAA-798] Length = 331 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 106/265 (40%), Gaps = 19/265 (7%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + ++ QNFL ++ + +SS V EIG G G +T+ L R+V+ Sbjct: 39 EQQRSQAHSFLSQNFLRSRQLVDYLLQSSDIGPEDIVYEIGPGRGIITERLARRC-REVV 97 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134 IEKD L+ + PN L +++ D L+ D + S ++ +N P++I +++ Sbjct: 98 AIEKDPSLVARLRTELADLPNVL-VLEGDFLEHDLPR-----SRYKVFSNPPFSITAQIV 151 Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 A P E L+ Q+E R SVL ++ + Sbjct: 152 QKLTGAPRPP---EDTYLIVQQEAAWRYLGTPRETLS---SVLLKADFVPSITYRFRRED 205 Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGG----EN 248 F P P V ++ + +P+P + + + F R +L+++L L + Sbjct: 206 FHPHPGVEVVMLRLLRREADPLPSGMRQVYRDFVTYGFTAWRPSLKETLGPLFARSGVDR 265 Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273 L + + + +L+ E + + Sbjct: 266 LWKRLDLRPDATPTSLAFEQWLGLF 290 >gi|253571409|ref|ZP_04848815.1| rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|251838617|gb|EES66702.1| rRNA methyltransferase [Bacteroides sp. 1_1_6] Length = 244 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 26/255 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I ++PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + E A+ L++L +++ I + F P PKV ST+ Sbjct: 123 SYL---------IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262 I P + KK E F K + + ++L +N ++A R Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225 Query: 263 NLSIEDFCRITNILT 277 N+S E F + N Sbjct: 226 NISFEQFVSLFNSYK 240 >gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 138 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 1/124 (0%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 LDLN +IA ++G LDG TVIEIG GPG LT+ LLT GARKVI IE+DQ+ L++I+ Sbjct: 1 LDLNFTGRIARAAGPLDGATVIEIGPGPGGLTRALLTEGARKVIAIERDQRAIAALEEIA 60 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 HP RL I+ DAL+ D + S P+RI+ANLPYNI T L +W++A+ WPP+++ L Sbjct: 61 EHHPGRLTIVAGDALEFDPKPLLE-SGPVRIVANLPYNIATALPVSWLTAEPWPPWYDRL 119 Query: 151 TLLF 154 L+ Sbjct: 120 VLML 123 >gi|189466914|ref|ZP_03015699.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM 17393] gi|189435178|gb|EDV04163.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM 17393] Length = 244 Score = 138 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 26/255 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ ++KI + + EIGAG G+ T L+ V IE D + + Sbjct: 9 SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ +PN +I+ DD LK F +P +I N+PYNI T ++ + + Sbjct: 68 TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGNIPYNISTNIIRKIVFESSATI 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + E A+ L++L +++ I + F P PKV S + Sbjct: 123 SYL---------IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSVL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262 I P + KK E F K + + ++L +N ++A R Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225 Query: 263 NLSIEDFCRITNILT 277 N+S E F + N Sbjct: 226 NISFEQFVSLFNSYK 240 >gi|305678698|ref|YP_003864117.1| erythromycin ribosome methylase [Enterococcus faecalis] gi|304324949|gb|ADM24829.1| erythromycin ribosome methylase [Enterococcus faecalis] gi|304324991|gb|ADM24870.1| erythromycin ribosome methylase [Enterococcus faecalis] gi|304325033|gb|ADM24911.1| erythromycin ribosome methylase [Enterococcus faecalis] Length = 245 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|32479370|ref|NP_862223.1| ErmCX [Corynebacterium striatum] gi|709806|gb|AAC95475.1| 23S rRNA methyltransferase [Corynebacterium striatum] gi|9945783|gb|AAG03357.1| ErmCX [Corynebacterium striatum] Length = 253 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 23/236 (9%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 +S Y + GQNFL + I+ I + G +IEIG G G LT + LG R + Sbjct: 1 MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +E D + K +E++ DD L F ++P I+ N+P+++ T + Sbjct: 58 TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDIS 191 L + A P W LL Q EV R A + + W + + Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM----MTAQWSPWFTFHLGSRVP 161 Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 F P P V ++ +P ++ + + F R + + + L+R G Sbjct: 162 RPAFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRQG 217 >gi|302527546|ref|ZP_07279888.1| dimethyladenosine transferase [Streptomyces sp. AA4] gi|302436441|gb|EFL08257.1| dimethyladenosine transferase [Streptomyces sp. AA4] Length = 260 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 27/278 (9%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 ++T++S + +GQNFL D ++ + ++ G ++E+ AG G LT L Sbjct: 2 RGVRTLMSAQSFGGRHELGQNFLADPAVIAAVCTAAARTTG-PLVELAAGDGALTVPLSR 60 Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 G R + +E D + L + H +++++ D L+ P ++ NLP+ Sbjct: 61 TG-RPLTAVELDPRRARRLAQRTGGH---VQVVRGDLLRHRLPDV-----PHTVVGNLPF 111 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 ++ T L P WE LL Q EV R + ++ + + Sbjct: 112 HLTTATLRRLFRQ----PHWELAVLLVQWEVARRRAGIGGASQ---MTAAWWPWFEFAVP 164 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR--------KTLRQ 239 + H F P P V ++ P+ ++ +E F R +T R Sbjct: 165 ARVPAHAFRPRPAVDGGILVISRRPVPLVEDRAEYQEFVREVFTGRGRGLGGILPRTGR- 223 Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 L L + + L+ E + + ++ Sbjct: 224 -LSTRAARTWLARQRLSPQALPRELTAEQWASLWELVR 260 >gi|195493555|ref|XP_002094468.1| GE21840 [Drosophila yakuba] gi|194180569|gb|EDW94180.1| GE21840 [Drosophila yakuba] Length = 207 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 14/184 (7%) Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITA 164 + + S I +I NLP+ I TRLL NW+ + +TL FQKEV +RI A Sbjct: 3 QHIPDTSQRIHLIGNLPFAISTRLLINWLEDLSCRRGAFRRIDTCMTLTFQKEVADRICA 62 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK 223 RLSV++ T+ M F I F P P+V V+ IP P ++ Sbjct: 63 PVGGEQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPLVE 122 Query: 224 KITQEAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNI 275 ++ + F R+K R+ L L +A ++ LR+ L++E R+ + Sbjct: 123 RVVRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDTLRSFELTVEQCLRLAEV 182 Query: 276 LTDN 279 +++ Sbjct: 183 YSEH 186 >gi|45826066|gb|AAS77676.1| ErmB [Shuttle vector pELS100] gi|45826074|gb|AAS77683.1| ErmB [Shuttle vector pELS200] gi|45826081|gb|AAS77689.1| ErmB [Shuttle vector pLPV111] gi|47420452|gb|AAT27432.1| 23S rRNA methylase [Lactobacillus reuteri] Length = 245 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PYN+ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYNLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + ++ F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLTVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L K F K + + ++L +N QA N Sbjct: 171 VLIKLTRHTTDVPDKYWKLYKY----FV--SKWVNREYRQLFTKNQFRQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|150238|gb|AAA98484.1| erythromycin resistance protein [Plasmid pNG2] Length = 284 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 18/226 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL + I+ I + G +IEIG G G LT + LG R + +E D + Sbjct: 8 RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAK 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 K +E++ DD L F ++P I+ N+P+++ T +L + A Sbjct: 66 LAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAILRKLLHA- 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W LL Q EV R A + ++ + + F P P V Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGATTM--MTAQWSPWFTFHLGSRVPRSAFRPQPNV 171 Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 ++ +P ++ + + F R + + + L+R G Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRQG 217 >gi|307091890|gb|ADN28280.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 58/124 (46%), Positives = 89/124 (71%), Gaps = 1/124 (0%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 LDLN+ +IA ++G L+G+TV+E+G GPG LT+ L L A +V+ IE+D + L+ ++ Sbjct: 1 LDLNLTARIARAAGPLEGVTVVEVGPGPGGLTRAPLALSASRVVAIERDPRCVAALQTVA 60 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 ++P RL +I+ DAL++D + P RI+ANLPYNI T LL +W++A+ WPP+++SL Sbjct: 61 ERYPGRLTVIEGDALQIDASAYAQEG-PARIVANLPYNIATALLVSWLTAEPWPPWYDSL 119 Query: 151 TLLF 154 TLLF Sbjct: 120 TLLF 123 >gi|63022016|ref|YP_232761.1| N-methyltransferase [Streptococcus pyogenes] gi|496516|emb|CAA47093.1| erm2 [Streptococcus pyogenes] gi|3127117|gb|AAC16049.1| erythromycin resistance determinant [Tn917 delivery vector pAJ005] gi|13549399|gb|AAK27828.1| rRNA methylase [TnphoZ mutagenesis vector pMHL120] gi|38707215|gb|AAR27225.1| N-methyltransferase [Streptococcus pyogenes] Length = 253 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 14 KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 72 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 73 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 127 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 128 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 178 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 179 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 230 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 231 LSTVTYEQVLSIFN 244 >gi|186909909|gb|ACC94310.1| ErmB [uncultured Enterococcus sp.] Length = 248 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 8 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 66 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 67 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 121 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 122 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 172 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 173 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 224 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 225 LSTITYEQVLSIFN 238 >gi|190410490|ref|YP_001965493.1| putative erythromycin methylase B protein [Pediococcus acidilactici] gi|81176611|gb|ABB59539.1| putative erythromycin methylase B protein [Pediococcus acidilactici] Length = 245 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA + + Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|182684293|ref|YP_001836040.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14] gi|182629627|gb|ACB90575.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14] Length = 261 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|59938866|gb|AAX12192.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 4 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 63 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 117 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 168 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA + + Sbjct: 169 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 220 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 221 LSTVTYEQVLSIFN 234 >gi|33243437|gb|AAQ01499.1| erythromycin resistance protein [Lactobacillus crispatus] gi|329666418|gb|AEB92366.1| N-methyltransferase [Lactobacillus johnsonii DPC 6026] Length = 245 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PYN+ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYNLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|1185588|gb|AAB40318.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1663] gi|1185596|gb|AAB40325.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1664] gi|1277133|gb|AAC53690.1| erythromycin-resistance protein [Cloning vector pFW15] gi|23986284|gb|AAN05740.1| rRNA methylase [Expression vector pLIV1] Length = 245 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|284518868|gb|ADB92556.1| Ccr1 [Streptomyces caelestis] Length = 341 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 106/259 (40%), Gaps = 23/259 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNF +++ G+++G+ +EIG G G +T+ L G + V+E D Q Sbjct: 58 RRVWGQNFFKSKAAVRRFTAQIGAVEGLPTVEIGPGSGMITKELAKSG-EPLTVVEIDDQ 116 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + +L + + P+ + ++ +D L E + R++ NLP+ T +L + Sbjct: 117 WARLLAE---ELPSHVTMVNEDFLSWGPE-----TECFRMVGNLPFGASTEILRTCLGYG 168 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDISPHVFFPSP 199 P + L Q E + + W M + H F P P Sbjct: 169 --PDRFLEGVFLVQLEFARKRAGAWGGNLFNA-----QWSPWFTFHMGHEFPRHCFRPVP 221 Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAG 254 K + + P +P+ E + +++ F + T+ ++ +R+ + L +A Sbjct: 222 KTDTATLFVDPRRDPLLPWRERVAYQELVSAVFNTGQLTVGEAAQRVNVRKPADWLRRAE 281 Query: 255 IETNLRAENLSIEDFCRIT 273 + R ++L ED+ + Sbjct: 282 VFPETRVKDLDAEDWSALF 300 >gi|15127842|gb|AAK84314.1|AF368302_1 ErmB [Enterococcus faecium] Length = 237 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|330719898|gb|EGG98373.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047] Length = 155 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +K GQNFL D NI++ I S + EIG G G +T+ LL + V+E Sbjct: 6 GHQARKRFGQNFLQDQNIIRNILLSINPKADDNIAEIGPGLGAITEHLLKATNGHLNVVE 65 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRL 133 D+ +LK +P L I Q DALK DF + + + +RI+ NLPYNI T L Sbjct: 66 IDRDLVQVLKTQFFNYPE-LNIHQGDALKFDFSQLVASDQSDTQKLRIVGNLPYNISTPL 124 Query: 134 LFN 136 +F Sbjct: 125 IFQ 127 >gi|20069865|ref|NP_613080.1| rRNA methylase [Lactobacillus reuteri] gi|27753648|ref|NP_776205.1| erm44 [Lactobacillus reuteri] gi|27656765|gb|AAO20906.1|AF205068_1 erm44 [Lactobacillus reuteri] gi|1230606|gb|AAC45607.1| rRNA methylase [Lactobacillus fermentum] gi|19918894|gb|AAL99232.1| rRNA methylase [Lactobacillus reuteri] Length = 250 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L K F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKLYKY----FV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|127203|sp|P06573|ERM_STRSA RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150491|gb|AAA25527.1| adenine methylase [Plasmid pAM77] Length = 245 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRSLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|223932186|ref|ZP_03624190.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591] gi|294623170|ref|ZP_06702052.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317] gi|59938860|gb|AAX12189.1| erythromycin ribosome methylase [Enterococcus faecium] gi|223899167|gb|EEF65524.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591] gi|291597422|gb|EFF28591.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317] gi|295980968|emb|CBJ57216.1| erythromycin ribosome methylase [Streptococcus pneumoniae] Length = 245 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|10956213|ref|NP_053005.1| MSL methylase [Streptococcus agalactiae] gi|115534816|ref|YP_783898.1| MLS methylase [Enterococcus faecalis] gi|169833871|ref|YP_001694729.1| rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) [Streptococcus pneumoniae Hungary19A-6] gi|194398695|ref|YP_002037949.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae G54] gi|293569556|ref|ZP_06680835.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071] gi|298229341|ref|ZP_06963022.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255910|ref|ZP_06979496.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503699|ref|YP_003725639.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|307127298|ref|YP_003879329.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae 670-6B] gi|312904689|ref|ZP_07763842.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0635] gi|313247840|ref|YP_004033002.1| erythromycin resistance protein [Enterococcus faecalis] gi|322388219|ref|ZP_08061823.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC 700779] gi|157834333|pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam) That Confers Macrolide-Lincosamide-Streptogramin Antibiotic Resistance, Nmr, Minimized Average Structure gi|511078|emb|CAA50902.1| MSL methylase [Streptococcus agalactiae] gi|886483|emb|CAA58028.1| adenine methylase [Enterococcus sp.] gi|12956999|emb|CAC29169.1| MLS methylase [Enterococcus faecalis] gi|33357431|gb|AAQ16568.1| macrolide resistance determining protein [Streptococcus hyointestinalis] gi|67043689|gb|AAY63932.1| MLS methylase [Streptococcus cristatus] gi|84616745|emb|CAJ53870.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] gi|102231548|gb|ABF70488.1| erythromycin and macrolide resistance protein [Lactobacillus johnsonii] gi|156788912|gb|ABU96031.1| Erm(B) methylase [Streptococcus pneumoniae] gi|168996373|gb|ACA36985.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Streptococcus pneumoniae Hungary19A-6] gi|169636215|dbj|BAG12485.1| MLS methylase [Streptococcus pneumoniae] gi|169636245|dbj|BAG12514.1| MLS methylase [Streptococcus pneumoniae] gi|169636260|dbj|BAG12527.1| MLS methylase [Streptococcus pneumoniae] gi|194358362|gb|ACF56810.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae G54] gi|291587734|gb|EFF19603.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071] gi|298239294|gb|ADI70425.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|306484360|gb|ADM91229.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae 670-6B] gi|310631974|gb|EFQ15257.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0635] gi|312837007|dbj|BAJ34893.1| erythromycin resistance protein [Enterococcus faecalis] gi|321140891|gb|EFX36392.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC 700779] gi|321156829|emb|CBW38816.1| erm(b) methylase; subname: full=mls methylase; subname: full=rrna adenine n-6-methyltransferase; ec=2.1.1.48; subname: full=erm(b) methylase; subname: full=mls methylase; subname: full=rRNA adenine N-6-methyltransferase; ec=2.1.1.48 [Streptococcus pneumoniae] gi|321156886|emb|CBW38874.1| rRNA methylase [Streptococcus pneumoniae] gi|321157364|emb|CBW39344.1| rRNA methylase [Streptococcus pneumoniae] gi|321157384|emb|CBW39363.1| rRNA methylase [Streptococcus pneumoniae] gi|321157409|emb|CBW39387.1| rRNA methylase [Streptococcus pneumoniae] gi|321157455|emb|CBW39433.1| rRNA methylase [Streptococcus pneumoniae] Length = 245 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|228860921|ref|YP_002842047.1| ErmB [Lactobacillus plantarum] gi|253755557|ref|YP_003028697.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407] gi|314943583|ref|ZP_07850342.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133C] gi|59938856|gb|AAX12187.1| erythromycin ribosome methylase [Enterococcus faecium] gi|219523816|gb|ACL14885.1| ErmB [Lactobacillus plantarum] gi|251818021|emb|CAZ55805.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407] gi|290770977|emb|CBK33767.1| MLS methylase [Streptococcus suis] gi|290770984|emb|CBK33773.1| MLS methylase [Streptococcus pyogenes] gi|309385833|gb|ADO66761.1| ErmB [Enterococcus faecium] gi|313575405|emb|CBR26934.1| MLS methylase [Streptococcus phage phi-SsUD.1] gi|313597730|gb|EFR76575.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133C] gi|319757842|gb|ADV69784.1| ErmB [Streptococcus suis JS14] gi|321156819|emb|CBW38806.1| ermB [Streptococcus pneumoniae] gi|321157419|emb|CBW39398.1| rRNA methylase [Streptococcus pneumoniae] Length = 245 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|28210013|ref|NP_780957.1| dimethyladenosine transferase [Clostridium tetani E88] gi|28202448|gb|AAO34894.1| dimethyladenosine transferase [Clostridium tetani E88] Length = 136 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 8/134 (5%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEVGER++A+ + YG LS+L + ++ +SP F P PKV S +I Sbjct: 1 MIQKEVGERMSAKPKAKEYGSLSLLVQYYCDINIIRRVSPSSFIPRPKVDSVIIKLDKLQ 60 Query: 213 NPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGIETNLRAENL 264 P E KI + AF RRKT+ +K L E + I+ R E L Sbjct: 61 KPRVSVKDEELFFKIIRSAFNMRRKTMWNVIKSLSNLDKEIIEKAFRVSNIDPKRRGETL 120 Query: 265 SIEDFCRITNILTD 278 S+E+F +++ L + Sbjct: 121 SVEEFAILSDSLHE 134 >gi|59938858|gb|AAX12188.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 4 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 63 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 117 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 168 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 169 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 220 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 221 LSTVTYEQVLSIFN 234 >gi|314993276|ref|ZP_07858648.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133B] gi|313592239|gb|EFR71084.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133B] Length = 249 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 10 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 68 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 69 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 123 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 124 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 174 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 175 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 226 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 227 LSTVTYEQVLSIFN 240 >gi|138752661|emb|CAM32752.1| MLS methylase [Streptococcus pneumoniae] Length = 245 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|2924303|emb|CAA57314.1| adenine methylase [Enterococcus hirae] Length = 245 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL + +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|29377810|ref|NP_816938.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis V583] gi|187729653|ref|YP_001798654.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|227518295|ref|ZP_03948344.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis TX0104] gi|228477694|ref|ZP_04062323.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126] gi|255976304|ref|ZP_05426890.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2] gi|256852580|ref|ZP_05557955.1| rRNA methylase [Enterococcus faecalis T8] gi|256959519|ref|ZP_05563690.1| rRNA methylase [Enterococcus faecalis Merz96] gi|257080187|ref|ZP_05574548.1| rRNA methylase [Enterococcus faecalis JH1] gi|292493937|ref|YP_003533080.1| rRNA methyltransferase [Bacillus sp. BS-01] gi|293384636|ref|ZP_06630499.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712] gi|293389670|ref|ZP_06634121.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613] gi|307273762|ref|ZP_07554987.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0855] gi|307283567|ref|ZP_07563750.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0860] gi|307288935|ref|ZP_07568906.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0109] gi|309803307|ref|ZP_07697404.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|309808536|ref|ZP_07702434.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 01V1-a] gi|312907858|ref|ZP_07766843.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 512] gi|312978967|ref|ZP_07790690.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 516] gi|317495460|ref|ZP_07953828.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424] gi|322392769|ref|ZP_08066227.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC 700780] gi|331267237|ref|YP_004326867.1| erythromycin resistance protein; ribosomal RNA adenine N-6-methyltransferaseadenine dimethylase family protein [Streptococcus oralis Uo5] gi|30179806|sp|P20173|ERMB_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|19568826|gb|AAL91926.1|AF480455_1 ErmB [Bacillus cereus] gi|19568828|gb|AAL91927.1|AF480456_1 ErmB [Bacillus cereus] gi|19568830|gb|AAL91928.1|AF480457_1 ErmB [Bacillus cereus] gi|19568832|gb|AAL91929.1|AF480458_1 ErmB [Bacillus cereus] gi|19568836|gb|AAL91931.1|AF480460_1 ErmB [Bacillus cereus] gi|456370|emb|CAA45935.1| erm2 [Streptococcus pyogenes] gi|1532095|gb|AAC44378.1| adenine methylase [Staphylococcus lentus] gi|1835782|gb|AAC71783.1| adenine methylase [Enterococcus faecalis] gi|6273679|emb|CAA73921.1| rRNA methylase [Staphylococcus aureus] gi|21492653|gb|AAA27452.2| Erm(B) [Enterococcus faecalis] gi|29345262|gb|AAO83009.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis V583] gi|31442295|dbj|BAC77345.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|51493758|gb|AAU04869.1| rRNA methylase [Bursa aurealis delivery vector pBursa] gi|67511466|emb|CAI99370.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] gi|67511470|emb|CAI99372.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] gi|67511474|emb|CAI99374.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] gi|87042724|gb|ABD16369.1| rRNA methylase [Streptococcus agalactiae] gi|110556100|dbj|BAE98119.1| rRNA methylase [Enterococcus faecalis] gi|134269486|emb|CAL69907.1| rRNA methylase [Streptococcus pyogenes] gi|145974706|gb|ABQ00061.1| ErmB [Staphylococcus aureus] gi|158148992|dbj|BAF82031.1| rRNA methylase [Staphylococcus aureus] gi|171854437|dbj|BAG16444.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|227074249|gb|EEI12212.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis TX0104] gi|228250583|gb|EEK09794.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126] gi|255969176|gb|EET99798.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2] gi|256712127|gb|EEU27160.1| rRNA methylase [Enterococcus faecalis T8] gi|256950015|gb|EEU66647.1| rRNA methylase [Enterococcus faecalis Merz96] gi|256988217|gb|EEU75519.1| rRNA methylase [Enterococcus faecalis JH1] gi|281334214|gb|ADA61298.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Staphylococcus aureus] gi|291078052|gb|EFE15416.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712] gi|291081011|gb|EFE17974.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613] gi|291276226|gb|ADD91314.1| rRNA methyltransferase [Bacillus sp. BS-01] gi|306500112|gb|EFM69458.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0109] gi|306503591|gb|EFM72832.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0860] gi|306509563|gb|EFM78608.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0855] gi|308164815|gb|EFO67065.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|308168213|gb|EFO70333.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV 01V1-a] gi|310626139|gb|EFQ09422.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 512] gi|311288232|gb|EFQ66788.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis DAPTO 516] gi|315154402|gb|EFT98418.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0031] gi|315160679|gb|EFU04696.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX0645] gi|315163599|gb|EFU07616.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX1302] gi|316914274|gb|EFV35752.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424] gi|316980281|emb|CBL58180.1| rRNA methylase [Staphylococcus aureus] gi|321144347|gb|EFX39750.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC 700780] gi|321157439|emb|CBW39418.1| rRNA methylase [Streptococcus pneumoniae] gi|326683909|emb|CBZ01527.1| erythromycin resistance protein; ribosomal RNA adenine N-6-methyltransferaseadenine dimethylase family protein [Streptococcus oralis Uo5] gi|739954|prf||2004266G erm2 protein Length = 245 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|156633671|gb|ABU90832.1| rRNA adenine N-6-methyltransferase [Shuttle vector pMTL007] Length = 257 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 18 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 76 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 77 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 131 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 132 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 182 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 183 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 234 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 235 LSTVTYEQVLSIFN 248 >gi|182684297|ref|YP_001836044.1| rRNA methylase [Streptococcus pneumoniae CGSP14] gi|182629631|gb|ACB90579.1| rRNA methylase [Streptococcus pneumoniae CGSP14] Length = 245 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|3411260|gb|AAC31204.1| rRNA methylase [Lactobacillus reuteri] Length = 250 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|182683142|ref|YP_001834889.1| rRNA methylase [Streptococcus pneumoniae CGSP14] gi|182628476|gb|ACB89424.1| rRNA methylase [Streptococcus pneumoniae CGSP14] Length = 245 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|126699621|ref|YP_001088518.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630] gi|126699626|ref|YP_001088523.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630] gi|5019745|gb|AAD37840.1|AF109075_2 rRNA methyltransferase Erm1B [Clostridium difficile] gi|5019748|gb|AAD37843.1|AF109075_5 rRNA methyltransferase Erm2B [Clostridium difficile] gi|15986374|emb|CAC82337.1| erythromycin methylase [Clostridium difficile] gi|115251058|emb|CAJ68889.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile] gi|115251063|emb|CAJ68894.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile] Length = 245 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA + + Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|153824301|ref|ZP_01976968.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Vibrio cholerae B33] gi|126518177|gb|EAZ75402.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) [Vibrio cholerae B33] Length = 108 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKT 236 + K + ++ P F P PKV S V+ +P+ + P P LE L ++ +E F +RRKT Sbjct: 1 QYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKT 60 Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 +R K L L GI +R ENL++ F + N L Sbjct: 61 VRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 100 >gi|237725694|ref|ZP_04556175.1| erythromycin resistance determinant [Bacteroides sp. D4] gi|298385271|ref|ZP_06994830.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14] gi|229435502|gb|EEO45579.1| erythromycin resistance determinant [Bacteroides dorei 5_1_36/D4] gi|298262415|gb|EFI05280.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14] Length = 253 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 14 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 72 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 73 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 127 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 128 SDIYLIVEEGFYKGTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 178 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 179 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 230 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 231 LSTVTYEQVLSIFN 244 >gi|325955700|ref|YP_004286328.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC] gi|325334486|gb|ADZ08234.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC] Length = 245 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PYN+ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|37962668|gb|AAR05653.1| ErmB [Bacteroides uniformis] Length = 245 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKGTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|67511468|emb|CAI99371.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae] Length = 245 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|59938864|gb|AAX12191.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 4 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 63 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 117 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 168 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 169 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 220 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 221 LSTVTYEQVLSIFN 234 >gi|7595746|gb|AAF64431.1|AF229200_4 erythromycin resistance methylase [Enterococcus faecium] gi|9246953|gb|AAF86219.1|AF242872_2 ErmB [Enterococcus faecium] Length = 248 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PYN+ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|314953278|ref|ZP_07856210.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133A] gi|313594677|gb|EFR73522.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133A] Length = 249 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 10 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 68 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 69 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 123 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 124 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 174 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 175 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 226 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 227 LSTVTYEQVLSIFN 240 >gi|237710832|ref|ZP_04541313.1| rRNA methylase [Bacteroides sp. 9_1_42FAA] gi|317474076|ref|ZP_07933354.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] gi|229455554|gb|EEO61275.1| rRNA methylase [Bacteroides sp. 9_1_42FAA] gi|316909759|gb|EFV31435.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] Length = 245 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVAEGFYKGTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|31321898|gb|AAK68630.1| erythromycin resistance protein [synthetic construct] Length = 251 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|187729640|ref|YP_001798641.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|222142618|ref|YP_002559373.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus JCSC5402] gi|256959343|ref|ZP_05563514.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5] gi|257086939|ref|ZP_05581300.1| rRNA methylase [Enterococcus faecalis D6] gi|261209325|ref|ZP_05923706.1| rRNA methylase [Enterococcus faecium TC 6] gi|269124242|ref|YP_003305352.1| AM7 [Enterococcus faecalis] gi|289567334|ref|ZP_06447709.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF] gi|296450891|ref|ZP_06892640.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP08] gi|296878629|ref|ZP_06902634.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP07] gi|307268297|ref|ZP_07549679.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX4248] gi|313247831|ref|YP_004032993.1| erythromycin resistance protein [Enterococcus faecalis] gi|61223741|sp|P0A4D5|ERM1_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|61223742|sp|P0A4D6|ERM1_CLOPE RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|14211231|gb|AAK57385.1|AF372620_1 ribosomal RNA methylase [glnQ allelic exchange vector pAG101] gi|15384305|gb|AAK96238.1|AF406971_3 erythromycin resistance methylase [Enterococcus hirae] gi|19568834|gb|AAL91930.1|AF480459_1 ErmB [Bacillus cereus] gi|20522042|gb|AAM26278.1|AF435436_1 Erm(B) [Cloning vector pAM434] gi|22595310|gb|AAN02496.1|AF405696_4 erythromycin resistance protein [Reporter vector pALH109] gi|22595315|gb|AAN02500.1|AF405697_4 erythromycin resistance protein [Reporter vector pALH122] gi|22595320|gb|AAN02504.1|AF405698_4 erythromycin resistance protein [Reporter vector pVA838] gi|40558|emb|CAA41221.1| ribosomal RNA methylase [Clostridium perfringens] gi|47020|emb|CAA68299.1| unnamed protein product [Enterococcus faecalis] gi|144783|gb|AAC36955.1| RNA methylase [Shuttle vector pJIR751] gi|208134|gb|AAA73116.1| RNA methylase [unidentified cloning vector] gi|220962|dbj|BAA14385.1| MLS resistance protein [synthetic construct] gi|841202|gb|AAC43480.1| ErmBP [Clostridium perfringens] gi|2745828|gb|AAB94755.1| adenine methylase [Cloning vector pIL252] gi|2773394|gb|AAB96789.1| adenine methylase [Cloning vector pIL253] gi|3132863|gb|AAC16408.1| erythromycin resistance gene [Shuttle vector pJIR1457] gi|3138989|gb|AAD11463.1| rRNA adenine N-6-methyltransferase [synthetic construct] gi|3320598|gb|AAC83650.1| adenine methylase [Integrational vector pMUTIN2] gi|5459333|emb|CAB50726.1| adenin-N6-methylase [Expression vector pERM-ex1] gi|5459338|emb|CAB50711.1| adenin-N6-methylase [Cloning vector pAMY-em1] gi|6979875|gb|AAF34637.1| ErmAM [Shuttle vector pHS17] gi|9963916|gb|AAG09762.1| erythromycin resistance methylase [Staphylococcus intermedius] gi|13442778|dbj|BAB39762.1| Erm [Shuttle vector pVA838] gi|15986369|emb|CAC82333.1| erythromycin methylase [Clostridium difficile] gi|25900787|emb|CAD57776.1| erythromycin resistance protein [Thermosensitive cloning vector pTN1] gi|31322220|gb|AAN87035.1| erythromycin-resistant methylase [Streptococcus gallolyticus] gi|31873066|gb|AAP60029.1| Erm [Cloning vector pMSP3535] gi|34558744|gb|AAQ75101.1| Erm [Shuttle vector pMSP3535-FT] gi|34558751|gb|AAQ75107.1| Erm [Shuttle vector pMSP3535-RT] gi|37595571|gb|AAQ94627.1| 23S rRNA methylase [Arcanobacterium pyogenes] gi|50593498|gb|AAT79488.1| ErmAM [Mutagenesis vector pCAM45] gi|51890404|dbj|BAD42832.1| erythromycin resistance gene [Shuttle vector pUCYIT356N] gi|57547343|gb|AAW52436.1| adenine methylase [plasmid vector pKS1] gi|67511472|emb|CAI99373.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] gi|73665560|gb|AAZ79487.1| erythromycin resistance protein [Mutagenesis vector pNZ5319] gi|78482803|emb|CAI91552.1| rRNA methyltransferase [Clostridium difficile] gi|93007463|gb|ABE97201.1| ribosomal RNA adenine N-6-methyltransferase [Streptococcus thermophilus] gi|134269470|emb|CAL69877.1| Erm(B) [Streptococcus pyogenes] gi|146188922|emb|CAJ21502.1| ErmB protein [Clostridium difficile] gi|158421230|gb|ABW37926.1| Erm [Cloning vector pAMS749-12] gi|159023682|gb|ABW87265.1| ribosomal RNA adenine dimethylase [Insertion vector pGh9:ISS1] gi|171854424|dbj|BAG16431.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae] gi|222121387|dbj|BAH18720.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus JCSC5402] gi|222478234|gb|ACM62691.1| ErmC [Shuttle vector pMSP3535H3] gi|225631881|emb|CAR79030.1| adenine methylase [Cloning shuttle vector pA13] gi|226442583|dbj|BAH56452.1| MLS resistance protein [Shuttle vector pLES003] gi|237857402|gb|ACR23640.1| rRNA methylase [synthetic construct] gi|238481675|gb|ACR43891.1| MLS resistance protein [Shuttle vector pMTL82254] gi|256949839|gb|EEU66471.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5] gi|256994969|gb|EEU82271.1| rRNA methylase [Enterococcus faecalis D6] gi|260076697|gb|EEW64443.1| rRNA methylase [Enterococcus faecium TC 6] gi|260161316|emb|CAZ39284.1| MLS methylase [Streptococcus suis] gi|267822506|gb|ACY79534.1| AM7 [Enterococcus faecalis] gi|289160874|gb|EFD08799.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF] gi|290791122|gb|ADD63342.1| rRNA adenine N-6-methyltransferase [Cloning vector pAE1] gi|296260263|gb|EFH07109.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP08] gi|296430436|gb|EFH16278.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile NAP07] gi|299892748|gb|ADJ57693.1| ErmAM [Expression vector pT1NX] gi|306515387|gb|EFM83920.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX4248] gi|312836998|dbj|BAJ34884.1| erythromycin resistance protein [Enterococcus faecalis] gi|314912611|gb|ADT64003.1| erythromycin resistance protein [Group II intron-based directed mutagenesis plasmid pMTL007C-E2] gi|315026359|gb|EFT38291.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecalis TX2137] gi|323650671|gb|ADX97419.1| Erm resistance protein [Clostridium acetobutylicum] gi|324029109|gb|ADY16710.1| erythromycin resistance protein [Clostridium acetobutylicum] Length = 245 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|127199|sp|P10738|ERMB_ECOLX RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150715|gb|AAA25634.1| 23S rRNA methylase [Plasmid pIP1527] Length = 245 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + + + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 NLSSEKLKSN-TRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P P+V S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPRVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|2623780|gb|AAB86539.1| erythromycin resistance determinant [Lactobacillus reuteri] Length = 248 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTKIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L K F K + + ++L +N +QA N Sbjct: 171 VLIKLTRHTTDVPDKYWKLYKY----FV--SKWVNREYRQLFTKNQFYQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|79946|pir||A27507 DNA adenine methylase (EC 2.1.1.-), ORF2 and ORF3 - Enterococcus faecalis plasmid pAMbeta1 (fragments) Length = 286 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|323142569|ref|ZP_08077385.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322413002|gb|EFY03905.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 262 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 23 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 81 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 82 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 136 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 137 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 187 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 188 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 239 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 240 LSTVTYEQVLSIFN 253 >gi|314997282|ref|ZP_07862255.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a01] gi|313588632|gb|EFR67477.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a01] Length = 249 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 10 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 68 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 69 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 123 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 124 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 174 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 175 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 226 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 227 LSTVTYEQVLSIFN 240 >gi|32470479|ref|NP_863164.1| erythromycin resistance transferase [Enterococcus faecium] gi|69244936|ref|ZP_00603126.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO] gi|257880618|ref|ZP_05660271.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933] gi|257883423|ref|ZP_05663076.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502] gi|257892145|ref|ZP_05671798.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410] gi|257895032|ref|ZP_05674685.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408] gi|258615894|ref|ZP_05713664.1| erythromycin resistance transferase [Enterococcus faecium DO] gi|260558614|ref|ZP_05830804.1| rRNA methylase [Enterococcus faecium C68] gi|309775385|ref|ZP_07670389.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|314940046|ref|ZP_07847232.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a04] gi|314948330|ref|ZP_07851721.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0082] gi|319935238|ref|ZP_08009677.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1] gi|320152807|ref|YP_004172630.1| ErmB [Enterococcus faecium] gi|11991160|gb|AAG42227.1|AF299292_1 erythromycin resistance methylase [Staphylococcus intermedius] gi|21886748|gb|AAM77891.1|AF516335_11 ermB methylase [Enterococcus faecium] gi|9963914|gb|AAG09761.1| erythromycin resistance methylase [Staphylococcus intermedius] gi|28849340|gb|AAO52847.1| erythromycin resistance transferase [Enterococcus faecium] gi|68196102|gb|EAN10533.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO] gi|257814846|gb|EEV43604.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933] gi|257819081|gb|EEV46409.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502] gi|257828505|gb|EEV55131.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410] gi|257831411|gb|EEV58018.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408] gi|260075352|gb|EEW63664.1| rRNA methylase [Enterococcus faecium C68] gi|281336200|gb|ADA62749.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Enterococcus faecium] gi|308916861|gb|EFP62597.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|313640723|gb|EFS05303.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0133a04] gi|313645247|gb|EFS09827.1| ribosomal RNA adenine dimethylase family protein [Enterococcus faecium TX0082] gi|319739759|gb|ADV60077.1| ErmB [Enterococcus faecium] gi|319809888|gb|EFW06276.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1] gi|323464898|gb|ADX77051.1| rRNA adenine N-6-methyltransferase [Staphylococcus pseudintermedius ED99] Length = 245 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|127202|sp|P21236|ERM_STRPN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=ErmAM; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|133919252|emb|CAL92507.1| MLS methylase [Streptococcus pneumoniae] gi|162286810|emb|CAP17168.1| erythromycin ribosome methylase [Streptococcus pneumoniae] Length = 245 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTITYEQVLSIFN 236 >gi|310286444|ref|YP_003937705.1| rRNA adenine N-6-methyltransferase [Escherichia coli] gi|308826773|emb|CBX36034.1| rRNA adenine N-6-methyltransferase [Escherichia coli] Length = 245 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P P+V S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPRVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|87159879|ref|YP_492693.1| rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87125853|gb|ABD22972.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 244 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + E +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYEFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|73487011|gb|AAZ76625.1| Erm(39)ne [Mycobacterium neworleansense] Length = 246 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 92/242 (38%), Gaps = 21/242 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNF D ++ I + G +IEIGAG G LT L L R + IE D++ Sbjct: 12 GQNFXRDRRVVADIVKIVARTTG-PIIEIGAGDGALTLPLQRLD-RPLTAIEIDRRRAGR 69 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L +S E++ D L+ +P ++ NLP+++ T +L + P Sbjct: 70 LAARTSA-----EVVGTDFLRYRLP-----PTPHVVVGNLPFHLTTAILRRLL----HGP 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 W LL Q EV R A + ++ + ++ + F P P V + + Sbjct: 116 GWTDAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFNLVRKVPADAFRPRPGVDAGL 172 Query: 206 IHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 + P+ + + E F R + L+ L GI + + Sbjct: 173 LTIARRDEPLVARADRRRYQSLAHEMFTGRGHGIAXILRHHVDRRWLLANGIHPSALPRD 232 Query: 264 LS 265 L+ Sbjct: 233 LT 234 >gi|294617740|ref|ZP_06697358.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] gi|291595986|gb|EFF27261.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] Length = 245 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA + + Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|316973725|gb|EFV57284.1| putative C2 domain protein [Trichinella spiralis] Length = 1392 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 23/215 (10%) Query: 89 ISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWIS 139 I+ ++I D +K + E F P+ +I NLP+N+ T L+ W+ Sbjct: 1133 IAESSGGIMDIRIGDVMKYEIETEFPADVKREWSEEPPPVHVIGNLPFNVSTYLIIKWLR 1192 Query: 140 A-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 A + LTL FQKEVG R+ A + H RLSV+ + + F I Sbjct: 1193 AMSLHEGPFVYGRTLLTLTFQKEVGLRMLAPIFNRHRCRLSVMCQYLSDVKRKFTIPGRA 1252 Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS--------LKRLG 245 PSP V V+ F P + P IP + ++K + F R K + LK+ Sbjct: 1253 CVPSPDVDVAVMQFRPKVTPVIPHHFDLVEKFCRHVFHYRNKYCIRGIETLFPDFLKKDF 1312 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 +L A + L L+IE+ + I + Sbjct: 1313 SHEILRFARVSPKLAPPALAIEEIRDMCKIYEEQC 1347 >gi|296119337|ref|ZP_06837905.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295967729|gb|EFG80986.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 264 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 26/263 (9%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D I K + + + G +IEIG G G LT L TL R + +E D Sbjct: 8 RHEHGQNFLNDKTIQKAVIDRVKATAG-PIIEIGPGAGALTNHLSTLD-RPLTAVEIDGS 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 LK HP EI+ D L + +P I+ NLP++ T +L + + A Sbjct: 66 LVHHLKQHL--HPGA-EIVHGDFLHYRLPE-----TPFVIVGNLPFHQITAMLRHILHA- 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W L+ Q EV R + + ++ + + H F P+P V Sbjct: 117 ---PRWTHAVLIVQWEVASRRASIGGATM---MTAQWWPWFDFELGQRVPAHSFTPAPSV 170 Query: 202 TSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA------ 253 ++ P+ ++ + + + F R + + Q R+ N QA Sbjct: 171 DGGLLTIARRTRPLLPRQERKAFQSMVHKVFTGRGRGIVQIASRMKLFNDARQARKWALD 230 Query: 254 -GIETNLRAENLSIEDFCRITNI 275 G++ ++LS + + + Sbjct: 231 SGLKHTALPKDLSAHHWVDLYRV 253 >gi|332969210|gb|EGK08240.1| rRNA (adenine-N(6)-)-methyltransferase [Desmospora sp. 8437] Length = 283 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 14/230 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ + + ++K++ + S V+EIGAG GNLT L ++KV+ +E D F Sbjct: 28 GQHLMHNKGLIKELVKISEVNRQDLVLEIGAGTGNLTMPLAE-KSKKVLAVENDPVFAER 86 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L+ N +E+IQ D L+++ + P ++AN+PY+I T +L T P Sbjct: 87 LQRKIESVSN-IEVIQQDFLQMNLPRV-----PFSVVANIPYSITTPILGKLFDRPTVP- 139 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 L+ +K +R TA + + + M I PH F P P+V S + Sbjct: 140 -IRRAVLVMEKGAAKRFTADPITNPRI---LKWRMWFEMKMGRTIPPHHFSPPPRVDSAI 195 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTL--RQSLKRLGGENLLHQA 253 + P+ + + FG + L +LK + L + Sbjct: 196 LTLWRRDQPMVALRHHSRFMALATFGLKSPQLPVSLALKGVFTPPQLKRL 245 >gi|312109334|ref|YP_003987650.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1] gi|311214435|gb|ADP73039.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1] Length = 284 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 20/247 (8%) Query: 15 SHYKIIPKKYM------GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 + +KY+ GQ+ L + I+ + + + TV+++GAG G LT + Sbjct: 5 NKRNHRTRKYIEWPNFSGQHLLHNKRIINDLIQIANLTSNDTVLDLGAGKGALTFPVAE- 63 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 A KVI +E D +F ILK + +PN +++IQ D LK P ++A +PY Sbjct: 64 KAGKVIAVEYDPRFVEILKKKAEAYPN-IKVIQQDILK-----LRLPKEPFIVVAGIPYA 117 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T ++ + + L+ +K +R T+ + L + + Sbjct: 118 ITTPIMKMLLHQPANS--LQRAVLVMEKGAAKRFTSYPITN---PLILKWRMWFDLGYVR 172 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246 +IS F P PKV S ++ +S + + A + L ++LK + Sbjct: 173 EISRENFSPPPKVDSAILIIRRKKKLSIPYKYYDSFLGLAEYALKYPQLPLYEALKGVFT 232 Query: 247 ENLLHQA 253 + + Sbjct: 233 PPQITRL 239 >gi|59938862|gb|AAX12190.1| erythromycin ribosome methylase [Enterococcus faecium] Length = 243 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 4 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 63 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 117 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 168 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 169 VLIKLTRHTTDVPDKYWKL----YTYFV--SKLVNREYRQLFTKNQFHQAMKHAK--VNN 220 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 221 LSTVTYEQVLSIFN 234 >gi|225573472|ref|ZP_03782227.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM 10507] gi|225039163|gb|EEG49409.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 23/242 (9%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LS 265 LS Sbjct: 223 LS 224 >gi|22164060|dbj|BAC07277.1| 23S rRNA methylase [Escherichia coli] Length = 245 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDNHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P P+V S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPRVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 223 LSTVTYEQVLSIFN 236 >gi|28373207|ref|NP_783844.1| erythromycin resistance protein [Lactobacillus fermentum] gi|28273050|emb|CAD32685.1| erythromycin resistance protein [Lactobacillus fermentum] Length = 245 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 26/252 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T L V IE D + I Sbjct: 8 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRI 66 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I ++PYNI T ++ + T Sbjct: 67 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGSIPYNISTDIIRKIVFESTATE 121 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + L++ +++ I F P PKV S + Sbjct: 122 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPKVNSVL 172 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 I H +P L F K + + ++L +N HQA NLS Sbjct: 173 IKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 224 Query: 266 I---EDFCRITN 274 E I N Sbjct: 225 TITYEQVLSIFN 236 >gi|255548465|ref|XP_002515289.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223545769|gb|EEF47273.1| dimethyladenosine transferase, putative [Ricinus communis] Length = 177 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 14/181 (7%) Query: 6 KSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63 K K +HY I K GQ+ L + ++ I + SG ++EIG G GNLT+ Sbjct: 7 KKQKPKQSSNHYQGGISFHKSKGQHILKNPLLVDTIVQKSGIKSTYVILEIGPGTGNLTK 66 Query: 64 MLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 LL G + V+++ +F + P L +IQ D LK D + Sbjct: 67 KLLEAG-KMVLLLNLILVWFSSSSAAFRAPLCPIELLVIQGDVLKTDLPYY------DIC 119 Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 +AN+PY I + L F ++ P + ++FQ+E R AQ Y RLSV T Sbjct: 120 VANIPYQISSPLTFKLLNHQ---PSFRCAIIMFQREFAMRFVAQPGDTLYCRLSVNTQTL 176 Query: 182 T 182 Sbjct: 177 C 177 >gi|392560|gb|AAA73396.1| adenine methylase [Streptococcus agalactiae] gi|30314839|emb|CAD70614.1| adenine methylase [Plasmid pIlo8] Length = 244 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 94/254 (37%), Gaps = 27/254 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + K + IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTIELDSHLF 63 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 64 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 118 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 119 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 169 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 170 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 221 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 222 LSTITYEQVLSIFN 235 >gi|1169553|sp|P45438|ERMK_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143195|gb|AAA22595.1| erythromycin-inducible 23S ribosomal RNA methylase [Bacillus licheniformis] Length = 287 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 112/271 (41%), Gaps = 44/271 (16%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ + + ++++I + + TV+E+GAG G LT ML + A KV+ +E D +F I Sbjct: 23 GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTML-SQKAGKVLAVENDSKFVAI 81 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L ++QHPN +II D +K+ K +++N+PY I T ++ ++ Sbjct: 82 LTRKTAQHPNT-KIIHQDIMKIHLPK-----EKFVVVSNIPYAITTPIMKMLLNNPA--S 133 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ ++ +K +R T++ Y + ++ +IS F P PKV S + Sbjct: 134 GFQKGIIVMEKGAAKRFTSKFIKNSYV---LAWRMWFDIGIVREISKEHFSPPPKVDSAM 190 Query: 206 IHFIPHLNPIPCCLESLKKI------------------TQEAFGKRR-KTLRQSLKRLGG 246 + + P + + F R+ K LR+SLK Sbjct: 191 VRITRKKD-APLSHKHYIAFLGLAEYALKEPQAPFCVALRGIFTPRQMKHLRKSLK---- 245 Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277 I L+ + I N +T Sbjct: 246 --------INNEKTVGTLTENQWAVIFNTMT 268 >gi|155965920|gb|ABU40942.1| erythromycin resistance methylase [Streptococcus suis] Length = 231 Score = 131 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 23/242 (9%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 3 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 61 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 62 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 116 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 117 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 167 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 168 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 219 Query: 264 LS 265 LS Sbjct: 220 LS 221 >gi|113196878|gb|ABI31739.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 +I H +P L F K + + ++L +N HQA Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219 >gi|330721180|gb|EGG99294.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047] Length = 112 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRR 234 + + + +F + P F P PKV S ++ P+ PIP + L + AF +RR Sbjct: 1 MVQYHCQVESLFKVPPTAFDPQPKVDSAIVRLTPYDKPPIPALDHKQLSSVVTTAFNQRR 60 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 KT+R +LK+L L GI+ LR E L++++F I++ LT Sbjct: 61 KTIRNNLKKLISTEQLEALGIDPGLRPEKLTLQNFVAISDTLT 103 >gi|2326851|emb|CAA70207.1| adenine methylase [Staphylococcus haemolyticus] Length = 244 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|296230789|ref|XP_002760889.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like [Callithrix jacchus] Length = 398 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 107/296 (36%), Gaps = 53/296 (17%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 +E GPG LTQ LL +GA KV+ +E D+ F P L+ + +L + Sbjct: 89 VRGKEKKPSHLFLECNPGPGILTQALLEVGA-KVVALESDKTFLPHLESLGKNLDGKLRV 147 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG---------------------------TR 132 I D ++D + I P +L +G + Sbjct: 148 IYCDFFRMDPKGTGAIKPPAMASQDLFQTLGLEVVPWKAGIPLKVIGALPIRSERKILWK 207 Query: 133 LLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 L+ N S + + E L+++KE + + N Y LSVL ++ + Sbjct: 208 LIHNLYSCTSIYKYGRIELNVLIYEKEFQKLMADPGNPDLYQVLSVLWQVACDIKVLHKV 267 Query: 191 SPHVFFPSPKVTSTVIH---------------FIPHLNPI-----PCCLESLKKITQEAF 230 S + F T H P+ N P + + + F Sbjct: 268 SKILLFKKEFCLETESHSELLEPSQEKLYFIQITPYRNLFTDNLTPMSYQVFIHMVKHCF 327 Query: 231 GKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 GKR+ L +SL L +++L Q G + + NL +DF ++ + ++D A Sbjct: 328 GKRKCRLIDHLRSLTPLDAKDILRQIGKKKEDKVTNLYPQDFKQLFETIQSSKDYA 383 >gi|157058876|gb|ABV03165.1| ErmC [Cloning vector pJL-ES] gi|157058879|gb|ABV03167.1| ErmC [Cloning vector pJL-proES] Length = 244 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 24/254 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 I + I + F + K ++ + N L AGI+ N Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVMKWVNKKYKKIFTKNQFNNSLKHAGIDDL---NN 226 Query: 264 LSIEDFCRITNILT 277 +S E F + N Sbjct: 227 ISFEQFLSLFNSYK 240 >gi|282165916|gb|ADA79936.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) [Staphylococcus aureus] Length = 244 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IANEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLSRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|49489776|ref|YP_025321.1| hypothetical protein pE194p5 [Staphylococcus aureus] gi|127193|sp|P02979|ERMC1_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|16902901|gb|AAL30371.1|AF424805_2 adenine methylase [Transposon mutagenesis vector pRL692] gi|46558|emb|CAA24591.1| unnamed protein product [Staphylococcus aureus] gi|209127|gb|AAA72303.1| erythromycin resistance determinant [unidentified cloning vector] gi|1185576|gb|AAB40308.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1728] gi|1185582|gb|AAB40313.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1730] gi|1185608|gb|AAB40336.1| erythromycin resistance; erythromycin resistance determinant [Cloning vector pDG1729] gi|1185616|gb|AAB40343.1| erythromicin resistance; erythromycin resistance determinant [Cloning vector pDG1731] gi|1638844|emb|CAA57985.1| adenine methylase [Staphylococcus equorum subsp. equorum] gi|5327232|emb|CAB46341.1| adenine methylase [Staphylococcus aureus] gi|11545512|gb|AAG37883.1| erythromycin resistance [Tn10 delivery vector pHV1248] gi|11545518|gb|AAG37888.1| erythromycin resistance [Tn10 delivery vector pHV1249] gi|37496520|emb|CAD50595.1| adenine methylase [Cloning vector pUvBBAC] gi|50345956|gb|AAT74896.1| erythromycin-resistance protein [Anabaena transfer vector pRL2665b] gi|50949217|emb|CAF31657.1| rRNA adenine N-6-methyltransferase [Cloning vector pGID052] gi|83659404|gb|ABC40606.1| adenine methylase [Cloning vector pHP13] gi|156523812|gb|ABU68999.1| Erm [Cloning vector pHB518] Length = 244 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIYGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IANEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLSRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|9507389|ref|NP_040475.1| 23S RNA methylase [Plasmid pT48] gi|253730996|ref|ZP_04865161.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735006|ref|ZP_04869171.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|127195|sp|P13978|ERMC3_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|455358|gb|AAA20192.1| 23S RNA methylase [Plasmid pT48] gi|253725266|gb|EES93995.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727019|gb|EES95748.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 244 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|82749774|ref|YP_415516.1| rRNA methylase [Staphylococcus saprophyticus] gi|82653299|emb|CAJ43792.1| rRNA methylase [Staphylococcus saprophyticus] Length = 244 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVV----FES 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + E +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADESYLIVEYEFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|9507309|ref|NP_040407.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pIM13] gi|15676003|ref|NP_273130.1| rRNA adenine N-6-methyltransferase [Neisseria meningitidis MC58] gi|60677343|ref|YP_209657.1| rRNA methylase [Staphylococcus lentus] gi|188039007|ref|YP_001901404.1| ErmC [Staphylococcus aureus] gi|188039010|ref|YP_001901402.1| ErmC [Staphylococcus aureus] gi|253316335|ref|ZP_04839548.1| ErmC [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|258420075|ref|ZP_05683031.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719] gi|258445548|ref|ZP_05693733.1| MlsR [Staphylococcus aureus A6300] gi|282929333|ref|ZP_06336901.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765] gi|127198|sp|P13956|ERM_BACSU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|11256781|pir||A81241 rRNA adenine N-6-methyltransferase NMB0066 [imported] - Neisseria meningitidis (strain MC58 serogroup B) gi|4699789|pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase gi|4699790|pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase gi|7546361|pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|7546362|pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|7546363|pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|7546364|pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc': Implications For The Reaction Mechanism gi|149052|gb|AAA98136.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pIM13] gi|7225287|gb|AAF40534.1| rRNA adenine N-6-methyltransferase; foreign cassette inserted to disrupt SiaD (NMB0067) to reduce virulence [Neisseria meningitidis MC58] gi|14324127|gb|AAK58461.1| ErmC [Cloning vector pIDN4] gi|28412258|gb|AAO39978.1| MlsR [Shuttle vector pSOS96] gi|28412265|gb|AAO39984.1| MlsR [Shuttle vector pSOS94] gi|28412272|gb|AAO39990.1| MlsR [Shuttle vector pSOS95] gi|33520710|gb|AAQ21191.1| MlsR [Reporter vector pGUSA] gi|60416749|emb|CAI59792.1| rRNA methylase [Staphylococcus lentus] gi|164416076|gb|ABY53434.1| ErmC [Staphylococcus aureus] gi|164416079|gb|ABY53436.1| ErmC [Staphylococcus aureus] gi|257843938|gb|EEV68331.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719] gi|257855644|gb|EEV78574.1| MlsR [Staphylococcus aureus A6300] gi|270055323|gb|ACZ58816.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) [Staphylococcus aureus] gi|270300163|gb|ACZ68969.1| rRNA adenine N-6-methyltransferase, (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) [Staphylococcus aureus] gi|282591833|gb|EFB96884.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765] gi|291032710|gb|ADD71856.1| dimethyladenosine transferase [Staphylococcus aureus] gi|304389165|gb|ADM29196.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] Length = 244 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|113196886|gb|ABI31743.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196894|gb|ABI31747.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196896|gb|ABI31748.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196898|gb|ABI31749.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 +I H +P L F K + + ++L +N HQA Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219 >gi|5668894|gb|AAD46055.1|AF076212_5 adenine methylase [Promoter screenings vector pMM223] gi|5668900|gb|AAD46060.1|AF076213_5 adenine methylase [Promoter screenings vector pMM225] Length = 244 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D ++ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDIMQFKFPK----NQSYKIYGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IANEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLSRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|56759186|gb|AAW27733.1| SJCHGC05919 protein [Schistosoma japonicum] Length = 289 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 13/171 (7%) Query: 116 SSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 S + +I NLP++I T L+ W+ W SLTL FQKEV ER+ A Sbjct: 61 SPRMFVIGNLPFSISTPLISRWLHDIAERRGIWRYGRVSLTLTFQKEVAERLAADVWDEQ 120 Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229 RLS+++ M DI F P PKV V+ P P IP ++K+ ++A Sbjct: 121 RSRLSIMSQAYCDVKYMKDIPGTAFVPPPKVDVGVVRLTPLKEPLIPVPYPYVEKLVRQA 180 Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRIT 273 F R+K + + L+ L + L +AG++ + L++ +F + Sbjct: 181 FHFRQKQIIRCLETLFPSDRPELVIQLFKEAGVQPVKQCIQLTMPEFRDLC 231 >gi|315301058|ref|ZP_07872369.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596] gi|313630573|gb|EFR98395.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596] Length = 128 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 IL Y + KK +GQNFL+D NIL +I +++ VIEIG G G LT+ L A+ Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEINKETNVIEIGPGIGALTEQLAK-AAK 71 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIAN 124 +V+ E DQ+ PIL D S + N ++++ D LK + E+ F + P++I+AN Sbjct: 72 EVVAFEIDQRLLPILDDTLSAYDN-IKVVHGDVLKANVEEVISTQFTHPELPLKIVAN 128 >gi|220897976|gb|ACL81266.1| erythromycin resistance protein [Lactobacillus reuteri] Length = 244 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVV----FES 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S + Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSAL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLKRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|68535048|ref|YP_254597.1| hypothetical protein pSHaeB01 [Staphylococcus haemolyticus JCSC1435] gi|68448409|dbj|BAE05991.1| ermC [Staphylococcus haemolyticus JCSC1435] Length = 244 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|3294231|emb|CAA11706.1| mono-methyl transferase [Streptomyces ambofaciens] Length = 259 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 27/267 (10%) Query: 23 KYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNFL D +A + V+E+GAG G LT+ L +R++ E D Sbjct: 9 RTLSQNFLADRAAAAHVARLTAPDRRHPPLVLEVGAGKGALTEPLARR-SRELHAYEIDS 67 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P L+ + P+ + ++ D L + +P + N+P++ ++ + A Sbjct: 68 RLVPGLRTRFAAAPH-VRVVAGDFLAARPPR-----TPFSVAGNVPFSRTADIVDWCLGA 121 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197 P TL+ Q E A+K + YGR L+V T + ++ +S + F P Sbjct: 122 ----PALTDATLITQLEY-----ARKRTGDYGRWTLLTVRTWPHHEWRLVGRVSRYGFRP 172 Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLH 251 +P+V + V+ P+ + + + F +L SL+R + Sbjct: 173 APRVDAGVLRIERRATPLLTGAAQHGWRDLVELGFSGVGGSLHASLRRAHPRRRVDAAFR 232 Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278 A ++ + ++ + R+ L Sbjct: 233 AARLDPGVLVGEVAPARWLRLHEELAS 259 >gi|37359459|gb|AAP74657.1| ribosomal methylase Erm34 [Bacillus clausii] Length = 281 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 18/257 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+F+ + +LK+I + + TV+E+GAG G LT +L A +V+ +E DQ+ Sbjct: 23 GQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALTTILSER-ADRVLAVEYDQKCIEA 81 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L+ N + I+ D +KV + P +++N+PY+I T ++ ++ Sbjct: 82 LQWKLVGSKN-VSILHQDIMKV-----ALPTEPFVVVSNIPYSITTAIMKMLLNNPK--N 133 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + ++ +K +R T+ Y + IS F P PKV S + Sbjct: 134 KLQRGAIVMEKGAAKRFTSVSPKDAYV---MAWHMWFDIHYERGISRSSFSPPPKVDSAL 190 Query: 206 IHFIPHLNP--IPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNL 259 + + +P +++ A R + LR + + G++ Sbjct: 191 VRIVRKQHPLFPYKEAKAMHDFLSYALNNPRAPLDQVLRGIFTAPQAKKVRQAIGVKPET 250 Query: 260 RAENLSIEDFCRITNIL 276 L + + + + Sbjct: 251 PVAMLHARQWAMVCDAM 267 >gi|330997743|ref|ZP_08321583.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella xylaniphila YIT 11841] gi|329569940|gb|EGG51696.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella xylaniphila YIT 11841] Length = 285 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 25/259 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 26 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 84 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 85 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 137 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ F +++ Q E +++ ++ Y +V +++++ P FFP P Sbjct: 138 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPT 193 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251 V S +++ + K AF KT L+ ++ ++ Sbjct: 194 VKSALLNIKRKQ----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 249 Query: 252 QAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 250 KFGLNLNAQIVCLSPSQWV 268 >gi|1169552|sp|Q03986|ERMD_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143201|gb|AAA22599.1| macrolide-lincosamide-streptogramin B resistance methylase [Bacillus licheniformis] Length = 287 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 20/259 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ + + ++++I + + TV+E+GAG G LT +L + A KV+ +E D +F I Sbjct: 23 GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVL-SQKAGKVLAVENDSKFVDI 81 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L ++QH N +II D +K+ K +++N+PY I T ++ ++ Sbjct: 82 LTRKTAQHSNT-KIIHQDIMKIHLPK-----EKFVVVSNIPYAITTPIMKMLLNNPA--S 133 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ ++ +K +R T++ Y + ++ +IS F P PKV S + Sbjct: 134 GFQKGIIVMEKGAAKRFTSKFIKNSYV---LAWRMWFDIGIVREISKEHFSPPPKVDSAM 190 Query: 206 IHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 + + P + + + + + A + L +L+ + + + E Sbjct: 191 VRITRKKD-APLSHKHYIAFRGLAEYALKEPNIPLCVALRGIFTPRQMKHLRKSLKINNE 249 Query: 263 ----NLSIEDFCRITNILT 277 L+ + I N +T Sbjct: 250 KTVGTLTENQWAVIFNTMT 268 >gi|260170953|ref|ZP_05757365.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D2] gi|265755244|ref|ZP_06090014.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA] gi|298482352|ref|ZP_07000538.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22] gi|315919274|ref|ZP_07915514.1| clindamycin resistance determinant [Bacteroides sp. D2] gi|317477408|ref|ZP_07936637.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] gi|325299659|ref|YP_004259576.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis DSM 18170] gi|263234386|gb|EEZ19976.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA] gi|298271331|gb|EFI12906.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22] gi|313693149|gb|EFS29984.1| clindamycin resistance determinant [Bacteroides sp. D2] gi|316906427|gb|EFV28152.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA] gi|324319212|gb|ADY37103.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis DSM 18170] Length = 266 Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 25/259 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 66 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ F +++ Q E +++ ++ Y +V +++++ P FFP P Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251 V S +++ + K AF KT L+ ++ ++ Sbjct: 175 VKSALLNIKRKQ----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 230 Query: 252 QAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 231 KFGLNLNAQIVCLSPSQWV 249 >gi|113196882|gb|ABI31741.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196890|gb|ABI31745.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 +I H +P L F K + + ++L +N HQA Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219 >gi|47219520|emb|CAG09874.1| unnamed protein product [Tetraodon nigroviridis] Length = 286 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 60/256 (23%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 ++ ++ Y + +K + QNFLLDL + KI +G L G V E+G GPG LT+ + Sbjct: 14 PLPTVGELIKLYNLRAEKQLSQNFLLDLKLTDKIVRQAGCLKGAHVCEVGPGPGGLTRSI 73 Query: 66 LTLGARKVIVIEKDQQF------------------------------FPILKDISSQHPN 95 L GA ++V+EKD +F P+L+ +S P Sbjct: 74 LNAGAADLLVVEKDSRFIPGLKVKLAAGTASSRLFVQPSRCDGVAFNIPVLQLLSEAAPG 133 Query: 96 RLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWISA------ 140 RL I+ D L ++ F + +I NLP+N+ T L+ W+ Sbjct: 134 RLRIVHGDILTYRMDRGFLGMTSKTWQEDPPNLHVIGNLPFNVSTPLIIKWLENIANQSG 193 Query: 141 ----DTWPPFWESLTLLFQKEVGERI--TAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 T PP + ++ + T + + H F Sbjct: 194 PFRLRTHPPHADIPEGGGREADSQYGQQTEEPSLHHGSVPLHGPQLLHHPRKAF------ 247 Query: 195 FFPSPKVTSTVIHFIP 210 PK TV+ +P Sbjct: 248 ---VPKPQQTVVRALP 260 >gi|168705804|ref|ZP_02738081.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246] Length = 208 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%) Query: 95 NRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + + + DAL D + +++ANLPY I T L+ N + Sbjct: 7 SNVRFVFGDALAKKSELNPDMLSTWDAAAKEVGCTRKKLVANLPYVIATPLISNLLIGH- 65 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P E + ++ Q E+ ER+ A N+ Y LSVL + ++P F P PKV Sbjct: 66 --PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQSVADVETVRKVAPTNFHPRPKVD 123 Query: 203 STVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG--------ENLLHQ 252 S ++ P+ + + ++ + RRK LRQ+L + L + Sbjct: 124 SAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNLRQALVGWPTGPREKKDVDAKLAE 183 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 GI+ LR+E L IE R+ + Sbjct: 184 LGIDGTLRSEALDIEQHLRLAAVF 207 >gi|127194|sp|P13957|ERMC2_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|8927568|gb|AAF82122.1|AF276982_3 erythromycin resistance [Integrative vector pNLE1] gi|153065|gb|AAA98228.1| ermC [Plasmid pE5] Length = 244 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P P+V S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|71558999|ref|YP_271816.1| ErmC [Staphylococcus aureus] gi|68270937|gb|AAY88963.1| ErmC [Staphylococcus aureus] Length = 244 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVDKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|56965270|ref|YP_177002.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16] gi|56911514|dbj|BAD66041.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16] Length = 281 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 12/190 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+F+ + +LK+I + + TV+E+GAG G LT +L A +V+ +E DQ+ Sbjct: 23 GQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALTTILSER-ADRVLAVEFDQKCVEA 81 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L+ N + I+ D +KV + P +++N+PY I T ++ ++ Sbjct: 82 LQWKLVGSKN-VSILHQDIMKVTLP-----TEPFVVVSNIPYAITTAIMKMLLNNPK--N 133 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + ++ +K +R T+ Y + IS F P PKV S + Sbjct: 134 KLQRGAIVMEKGAAKRFTSVSPKDAYV---MAWHMWFDIHYERGISRSAFSPPPKVDSAL 190 Query: 206 IHFIPHLNPI 215 + + +P+ Sbjct: 191 VRIVRKQHPL 200 >gi|183220525|ref|YP_001838521.1| putative dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778947|gb|ABZ97245.1| Putative dimethyladenosine transferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 256 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 37/263 (14%) Query: 39 IAESSGSL--DGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHP 94 I + L +G + EIG G G LT +L L ++ + E D + + K +I + P Sbjct: 4 IVNVAKPLFSEGDVTLAEIGIGLGTLTYPILCLE-KETDLFEIDHAYIQLAKDEILPKFP 62 Query: 95 NRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 + + + DAL E F+I + + NLPY++ T ++ I ++ + Sbjct: 63 HAI-LHAGDAL----ENLFHIYPKKVFVFGNLPYHLTTEIINTLIINCRH---FQGGIFM 114 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL- 212 QKE ER+ LSV + + + + FFP PK+ S ++ P Sbjct: 115 VQKEFAERLV-----KETSSLSVFLSAFCEIKFLKTVHKNCFFPIPKIHSALLLLTPKQK 169 Query: 213 -------NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----------LLHQAGI 255 +E ++ + F +RK ++ SL+ N L ++ I Sbjct: 170 VGNNQWSPQSNEGVEIWSRMLRTLFWGKRKQIQVSLRESPFSNDPMFRDALGEALLRSQI 229 Query: 256 ETNLRAENLSIEDFCRITNILTD 278 R E L+ E F + L D Sbjct: 230 PPTKRPEELNREQFLNLGQHLLD 252 >gi|113196880|gb|ABI31740.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196884|gb|ABI31742.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196888|gb|ABI31744.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] gi|113196892|gb|ABI31746.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 +I H +P L F K + + ++L +N HQA Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219 >gi|297203193|ref|ZP_06920590.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] gi|197717356|gb|EDY61390.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083] Length = 258 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 20/263 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + QNFL D ++A + ++E+GAG G LT++L R ++ E D+ Sbjct: 8 SRALSQNFLTDRAAAARLARLAVPRPKNPLLLEVGAGKGALTELLAPRC-RTLLAYEIDE 66 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + P+L S P ++ +I D L + + + N+P++ ++ + A Sbjct: 67 RLVPVLAARFSGTP-QVRVIGGDFLAARPPR-----TAFSVAGNVPFSRTAAIVDWCLRA 120 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P TLL Q E + T S + L+VL R + + + F P P+ Sbjct: 121 ----PALTDATLLTQVEYARKRTGDYGS--WTLLTVLNWPRYEWRLAGLVGRRSFRPVPR 174 Query: 201 VTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAG 254 V + ++ P P L + + + F +L SL R A Sbjct: 175 VDAGILRIERRGVPLLPPGALPGWRHLVELGFSGVGGSLHASLCRAHPRRRVDAGFRAAR 234 Query: 255 IETNLRAENLSIEDFCRITNILT 277 ++ ++ ++ E + R+ +L Sbjct: 235 LDRDVLVGEVAPERWLRLHEVLA 257 >gi|9507371|ref|NP_040462.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pNE131] gi|127201|sp|P06572|ERMM_STAEP RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150831|gb|AAA98296.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid pNE131] Length = 244 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S ++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----FALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|15612943|ref|NP_241246.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125] gi|5822819|dbj|BAA83962.1| ERMK [Bacillus halodurans] gi|10172993|dbj|BAB04099.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125] Length = 284 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 14/202 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ + + +L++I + + TV+E+GAG G LT L A++V+ +E DQ F + Sbjct: 23 GQHLMHNKKLLQEIVDQAKVSKKDTVLELGAGKGALTTFLSER-AKRVLAVEYDQTFIQV 81 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L + N II +D +++ K +++N+PY+I T ++ +S Sbjct: 82 LNRKMAHAANT-TIIHEDIMRIHLPK-----GEFVVVSNIPYSITTPIMKKLLSNPV--S 133 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ ++ +K +R T+ Y + + IS F P PKV S + Sbjct: 134 GFQRGVIVMEKGAAKRFTSPFIKNAYV---LAWRMWFDLEYVKGISRECFSPPPKVDSAM 190 Query: 206 IHFIPHLNPIPC--CLESLKKI 225 + +PI + + Sbjct: 191 VFISRKPDPIVPYKDRSAFFGL 212 >gi|32455918|ref|NP_862543.1| methylase ermT [Plasmid p121BS] gi|11527994|gb|AAG37071.1|AF310974_2 methylase ermT [Plasmid p121BS] Length = 244 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 30/257 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTLELAKRC-NYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + L++ +++ I F P P+V S++ Sbjct: 123 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260 I H + I + + K + + ++L +N +Q A I+ Sbjct: 174 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYRKLFSKNQFYQALKYARIDDL-- 224 Query: 261 AENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 -NNISFEQFLSLFNSYK 240 >gi|293367853|ref|ZP_06614498.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318022|gb|EFE58423.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] Length = 244 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVV----FES 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADESYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|307091952|gb|ADN28311.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 55/124 (44%), Positives = 87/124 (70%), Gaps = 1/124 (0%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 LDLN+ +IA ++GSL+ T++EIG GPG LT+ LL LGAR+VI +E+D + L++++ Sbjct: 1 LDLNLTARIARAAGSLETHTIVEIGPGPGGLTRALLALGARRVIAVERDDRAIVALQEVA 60 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +++P RL+I+ DAL+ D +I+ANLPYN T LL W+SA+ WPP+++++ Sbjct: 61 ARYPGRLDIVAADALEFDPRPMLG-GDRAKIVANLPYNTATVLLTGWLSAEPWPPWYDAM 119 Query: 151 TLLF 154 L+F Sbjct: 120 VLMF 123 >gi|294776564|ref|ZP_06742037.1| ribosomal RNA adenine dimethylase family protein [Bacteroides vulgatus PC510] gi|294449620|gb|EFG18147.1| ribosomal RNA adenine dimethylase family protein [Bacteroides vulgatus PC510] Length = 261 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 112/260 (43%), Gaps = 25/260 (9%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 +P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 1 MPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLRI-ANNVVAIEND 59 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L+ + S N ++++ D + KF P ++++N+PY I + + F + Sbjct: 60 TALVEHLRKLFSDARN-VQVVGCDFRNFEVPKF-----PFKVVSNIPYGITSDI-FKILM 112 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 ++ F +++ Q E +++ ++ Y +V +++++ P F P P Sbjct: 113 FESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPP 168 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLL 250 V S +++ + K AF KT L+ ++ ++ Sbjct: 169 TVKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSIS 224 Query: 251 HQAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 225 EKFGLNLNAQIVCLSPSQWV 244 >gi|730032|sp|Q04720|ERMJ_BACAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143198|gb|AAA22597.1| rRNA methyltransferase [Bacillus anthracis] Length = 287 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 112/259 (43%), Gaps = 20/259 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ + + ++++I + + TV+E+GAG G LT +L + A KV+ +E D +F I Sbjct: 23 GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVL-SQKAGKVLAVENDSKFVDI 81 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L ++QH N +II D +K+ K +++N+PY I T ++ ++ Sbjct: 82 LTRKTAQHSNT-KIIHQDIMKIHLPK-----EKFVVVSNIPYAITTPIMKMLLNNPA--S 133 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 ++ ++ +K +R T++ Y + ++ +IS F P PKV S + Sbjct: 134 GFQKGIIVMEKGAAKRFTSKFIKNSYV---LAWRMWFDIGIVREISKEHFSPPPKVDSAM 190 Query: 206 IHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262 + + P + + + + + A + L L+ + + + E Sbjct: 191 VRITRKKD-APLSHKHYIAFRGLAEYALKEPNIPLCVRLRGIFTPRQMKHLRKSLKINNE 249 Query: 263 ----NLSIEDFCRITNILT 277 L+ + I N +T Sbjct: 250 KTVGTLTENQWAVIFNTMT 268 >gi|221140091|ref|ZP_03564584.1| rRNA methylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|14021039|dbj|BAB47663.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|27529888|dbj|BAC53825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|282167041|gb|ADA81057.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|302750710|gb|ADL64887.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|302751482|gb|ADL65659.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 243 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 24/253 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + VIEIG+G G+ T+ L+ + +R VI IE D + Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVIAIEIDGGLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K+ + N +++IQ D LK F K N +I N+PYNI T ++ T+ Sbjct: 69 KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ +K +R+ + L +L M+ + P F P P V S +I Sbjct: 120 AKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174 Query: 207 HFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN-L 264 H I + + K + + + L +N QA N+ N L Sbjct: 175 VLERHQPLISKKDYKKYRSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINKL 227 Query: 265 SIEDFCRITNILT 277 S E F I N Sbjct: 228 SKEQFLSIFNSYK 240 >gi|15923042|ref|NP_370576.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15924645|ref|NP_372179.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15925755|ref|NP_373288.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|15926492|ref|NP_374025.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|15927234|ref|NP_374767.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|15927723|ref|NP_375256.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|15928177|ref|NP_375710.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|49482298|ref|YP_039522.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49483899|ref|YP_041123.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57865851|ref|YP_190052.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57867109|ref|YP_188794.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57867248|ref|YP_188915.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|148266484|ref|YP_001245427.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|148268136|ref|YP_001247079.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150392517|ref|YP_001315192.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150394203|ref|YP_001316878.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156978382|ref|YP_001440641.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|156979973|ref|YP_001442232.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|254663980|ref|ZP_05143452.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|255006441|ref|ZP_05145042.2| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257428438|ref|ZP_05604836.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431607|ref|ZP_05607975.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257793731|ref|ZP_05642710.1| rRNA methylase Erm [Staphylococcus aureus A9781] gi|258422472|ref|ZP_05685383.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719] gi|258447341|ref|ZP_05695487.1| rRNA methylase [Staphylococcus aureus A6300] gi|258448318|ref|ZP_05696443.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224] gi|258451920|ref|ZP_05699937.1| rRNA methylase [Staphylococcus aureus A5948] gi|258454555|ref|ZP_05702521.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937] gi|262053220|ref|ZP_06025373.1| rRNA methylase [Staphylococcus aureus 930918-3] gi|282929822|ref|ZP_06336965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102] gi|293503531|ref|ZP_06667378.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|294617324|ref|ZP_06696964.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] gi|295407727|ref|ZP_06817512.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819] gi|295429344|ref|ZP_06821965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297246800|ref|ZP_06930609.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796] gi|304378949|ref|ZP_07361713.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60389641|sp|Q6GKQ0|ERMA_STAAR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|60392246|sp|P0A0H1|ERMA_STAAM RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|60392247|sp|P0A0H2|ERMA_STAAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|60392248|sp|P0A0H3|ERMA_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|43731|emb|CAA26964.1| S-adenosyl-methionine dependent methylase [Staphylococcus aureus] gi|5360835|dbj|BAA82205.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|13699967|dbj|BAB41266.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|13700706|dbj|BAB42003.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315] gi|13701452|dbj|BAB42746.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|13701943|dbj|BAB43235.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|13702548|dbj|BAB43689.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] gi|14245819|dbj|BAB56214.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|14247427|dbj|BAB57817.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|28465856|dbj|BAC57474.1| rRNA methylase [Staphylococcus aureus] gi|49240427|emb|CAG39078.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49242028|emb|CAG40727.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57636509|gb|AAW53297.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57637767|gb|AAW54555.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|57637906|gb|AAW54694.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis RP62A] gi|62815916|emb|CAH17569.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|70568192|dbj|BAE06289.1| rRNA methylase [Staphylococcus aureus] gi|147739553|gb|ABQ47851.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|147741205|gb|ABQ49503.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149944969|gb|ABR50905.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|149946655|gb|ABR52591.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156720517|dbj|BAF76934.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|156722108|dbj|BAF78525.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3] gi|195963189|emb|CAQ43014.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|221327661|gb|ACM17505.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|238773849|dbj|BAH66412.1| rRNA methylase [Staphylococcus aureus] gi|255914597|emb|CBA13539.1| adenine methylase [Staphylococcus rostri] gi|257275279|gb|EEV06766.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257277661|gb|EEV08345.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257787703|gb|EEV26043.1| rRNA methylase Erm [Staphylococcus aureus A9781] gi|257841538|gb|EEV65976.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719] gi|257853867|gb|EEV76824.1| rRNA methylase [Staphylococcus aureus A6300] gi|257858413|gb|EEV81291.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224] gi|257860403|gb|EEV83234.1| rRNA methylase [Staphylococcus aureus A5948] gi|257863282|gb|EEV86044.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937] gi|259158881|gb|EEW43972.1| rRNA methylase [Staphylococcus aureus 930918-3] gi|269939564|emb|CBI47925.1| rRNA adenine N-6-methyltransferase ErmA1 [Staphylococcus aureus subsp. aureus TW20] gi|269941138|emb|CBI49525.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp. aureus TW20] gi|282589029|gb|EFB94134.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102] gi|285815777|gb|ADC36264.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981] gi|285817338|gb|ADC37825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981] gi|291095197|gb|EFE25462.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|291596433|gb|EFF27686.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679] gi|294967403|gb|EFG43447.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819] gi|295126722|gb|EFG56367.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297176351|gb|EFH35626.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796] gi|299758060|dbj|BAJ10035.1| 23S rRNA adenine N-6-methyltransferase [Staphylococcus aureus] gi|304342469|gb|EFM08344.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312828687|emb|CBX33529.1| rRNA adenine N-6-methyltransferase (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycinresistance protein) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128354|gb|EFT84366.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS03] gi|315195559|gb|EFU25946.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS00] gi|329727340|gb|EGG63796.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|224805|prf||1202257A gene ermA Length = 243 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 24/253 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + VIEIG+G G+ T+ L+ + +R V IE D + Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K+ + N +++IQ D LK F K N +I N+PYNI T ++ T+ Sbjct: 69 KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ +K +R+ + L +L M+ + P F P P V S +I Sbjct: 120 AKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174 Query: 207 HFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN-L 264 H I + + K + + + L +N QA N+ N L Sbjct: 175 VLERHQPLISKKDYKKYRSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINKL 227 Query: 265 SIEDFCRITNILT 277 S E F I N Sbjct: 228 SKEQFLSIFNSYK 240 >gi|2317796|gb|AAC45552.1| rRNA N-6-methyltransferase [Staphylococcus chromogenes] Length = 244 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+ YNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|2407671|gb|AAC33146.1| rRNA N-6-methyltransferase [Staphylococcus simulans] Length = 244 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+ YNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|2764999|emb|CAA70208.1| adenine methylase [Staphylococcus hyicus] Length = 244 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I ++PYNI T ++ + + Sbjct: 68 TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGSIPYNISTDIIRKVV----FES 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADESYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|127196|sp|P10337|ERMF_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|150541|gb|AAA98217.1| macrolide-lincosamide-streptogramin B-resistance protein [Bacteroides fragilis] gi|154890|gb|AAA88675.1| macrolide-lincosamide-streptogramin-resistance protein [Bacteroides fragilis] gi|853782|emb|CAA60706.1| ermF [Bacteroides sp.] gi|1016682|gb|AAB39962.1| rRNA methyltransferase [Cloning vector pFD288] Length = 266 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 66 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ F +++ Q E +++ ++ Y +V +++++ P F P P Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--------RKT-LRQSLKRLGGENLLH 251 V S +++ + K AF KT L+ ++ ++ Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISYLLEKPDLSVKTALKSIFRKSQVRSISE 230 Query: 252 QAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249 >gi|7715978|gb|AAF68230.1|AF203972_3 ErmF [Shuttle vector pBA] Length = 266 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 66 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ F +++ Q E +++ ++ Y +V +++++ P F P P Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--------RKT-LRQSLKRLGGENLLH 251 V S +++ + K AF KT L+ ++ ++ Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISYLLEKPDLSVKTALKSIFRKSQVRSISE 230 Query: 252 QAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249 >gi|237713154|ref|ZP_04543635.1| ErmF [Bacteroides sp. D1] gi|237721691|ref|ZP_04552172.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4] gi|262409455|ref|ZP_06085997.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] gi|229446812|gb|EEO52603.1| ErmF [Bacteroides sp. D1] gi|229449487|gb|EEO55278.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4] gi|262352667|gb|EEZ01765.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22] Length = 266 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 25/258 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G +T LL KV+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIKQANITQQDTVLDIGAGKGFITVHLLK-NVNKVVAIENDL 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L + N ++++ D K P ++++N+PY I + + F + Sbjct: 66 VLYKHLCKRFNNAQN-VQVVGCDFRKFTVPLL-----PFKVVSNIPYGITSDI-FRILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D + +++ Q E +++ + S Y +V +++ISP F P P Sbjct: 119 DNVE-LFLGGSIVLQSEPAKKLVS---SKVYNPYTVFYHTFYDLEFLYEISPGSFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAF----GKR-----RKTLRQSLKRLGGENLLH 251 V S ++ + I L K+ AF ++ R L+ ++ ++ Sbjct: 175 VKSALLKIKRKQSSIDFEL----KVKYLAFISCLLQKPDLSVRTALKSIFRKSQVRSISE 230 Query: 252 QAGIETNLRAENLSIEDF 269 + GI N + LS + Sbjct: 231 KFGINLNAQIVCLSPSQW 248 >gi|68304920|gb|AAY89931.1| predicted dimethyladenosine transferase NMA0902 [uncultured bacterium BAC13K9BAC] Length = 141 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + + QKEV +RI ++ N YGRLSV+T +F+IS +VF P PKV S+ I Sbjct: 7 IIDIHFMLQKEVVDRIISKPNIKVYGRLSVMTQAYFNTKKLFNISENVFTPKPKVKSSFI 66 Query: 207 HFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264 +P + E I + AF RRKT+RQSL + + I + LRAENL Sbjct: 67 RLLPRKSIFKNSNHEEVFYNIVKSAFEGRRKTIRQSLSKYLSHDDYDNVNISSTLRAENL 126 Query: 265 SIEDFCRITNIL 276 +++D+ I+ + Sbjct: 127 TVDDYLLISKYV 138 >gi|196007440|ref|XP_002113586.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens] gi|190583990|gb|EDV24060.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens] Length = 330 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 107/298 (35%), Gaps = 39/298 (13%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 I L++ K+A+S G L +IE GPG LT+ LL G +++ Sbjct: 25 KRNIKASHRH----LINPQTADKVAKSFGDLHKYVIIEKDPGPGVLTKALLNAGCTQLVA 80 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI---------------- 119 +E +Q+F +LK++ + RL+ D K+D + P Sbjct: 81 LESNQKFLSVLKELENDSDGRLKAYYSDINKLDLIPLYQGYIPPVYQSGDILGHIKPKSW 140 Query: 120 ------RIIANLPYNIGTRL----LFNWISADTWPPFWESLTLLFQKE-VGERITAQKNS 168 R+I +G R L I + + + E + A + Sbjct: 141 DDDIVGRVIGVANNTMGHRFTISYLIRLIERSGLHRWGRWQHIAYYTEKTARALYAHVGT 200 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSP-KVTSTVIHFI-----PHLNPIPCCLESL 222 P YGR++VL+ + + FFP + + I H L+ L Sbjct: 201 PIYGRITVLSNILCNISTLSKDHIDEFFPRGMAIKGNSMELICLETKKHCELSDEALKFL 260 Query: 223 KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 I Q+ F RR+ L L+ + G +L + I A N+S DF + + Sbjct: 261 DPILQQVFAARRQPLLNRLESIAPGSYTVLEKLKIPPRKCASNMSPMDFVELAEAFSS 318 >gi|228470626|ref|ZP_04055482.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3] gi|288801882|ref|ZP_06407324.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18] gi|299143035|ref|ZP_07036156.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735] gi|319641873|ref|ZP_07996549.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A] gi|228307634|gb|EEK16613.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3] gi|288335924|gb|EFC74357.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18] gi|298575486|gb|EFI47371.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735] gi|317386505|gb|EFV67408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A] Length = 266 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 66 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ F +++ Q E +++ ++ Y +V +++++ P F P P Sbjct: 119 ESLGNFL-GGSIILQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251 V S +++ + K AF KT L+ ++ ++ Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 230 Query: 252 QAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249 >gi|255012163|ref|ZP_05284289.1| rRNA adenine N-6-methyltransferase [Bacteroides fragilis 3_1_12] gi|313150007|ref|ZP_07812200.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|154893|gb|AAA27431.1| clindamycin resistance determinant (ermFS) [Bacteroides fragilis] gi|6979874|gb|AAF34636.1| ErmF [Shuttle vector pHS17] gi|313138774|gb|EFR56134.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 266 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 66 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 ++ F +++ Q E +++ ++ Y +V +++++ P F P P Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251 V S +++ + K AF KT L+ ++ ++ Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 230 Query: 252 QAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249 >gi|306834410|ref|ZP_07467525.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC 700338] gi|62467678|gb|AAX84025.1| erythromycin ribosome methylase [Streptococcus pasteurianus] gi|288856432|emb|CAY48681.1| 23S rRNA methylase [Staphylococcus aureus subsp. aureus ST398] gi|296777676|gb|ADH43093.1| erythromycin rRNA methylase protein [uncultured bacterium MID12] gi|304423439|gb|EFM26590.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC 700338] Length = 244 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 30/257 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + L++ +++ I F P P+V S++ Sbjct: 123 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260 I H + I + + K + + +L +N +Q A I+ Sbjct: 174 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYIKLFSKNQFYQALKYARIDDL-- 224 Query: 261 AENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 -NNISFEQFLSLFNSYK 240 >gi|113196900|gb|ABI31750.1| adenine-N6 methyltransferase [Streptococcus pneumoniae] Length = 219 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 21/235 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V I D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIALDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 +I H +P L F K + + ++L +N HQA Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219 >gi|25052799|gb|AAN65178.1| putative methyl transferase [Neisseria gonorrhoeae] Length = 135 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 9/141 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +K GQNFL D I+ I + VIEIG G +T+ L ++ V+E Sbjct: 4 HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAE-KVNRLHVVEI 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ LK + ++L I + D L+ D F NI I+ NLPYNI T LLF Sbjct: 63 DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKEIVGNLPYNISTPLLFKL- 116 Query: 139 SADTWPPFWESLTLLFQKEVG 159 + + QK V Sbjct: 117 --AVVADDVADMHFMLQKGVV 135 >gi|5123863|emb|CAA66307.2| 23S rRNA methyltransferase [Streptomyces fradiae] Length = 291 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 102/270 (37%), Gaps = 31/270 (11%) Query: 21 PKKYMGQNFLLDLNILKKIAES---SGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVI 76 ++ GQNF ++ A + S +V +E+G G G +T+ L+ G ++ + Sbjct: 27 ARRVWGQNFFRSAGSARRFARQLTGAESAGNDSVTVEVGPGAGRITKELVRDG-HPIVAV 85 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D + L ++ + PN L ++ DD P+R I NLP+ GTR+L Sbjct: 86 EVDPHWADRLAEL--ELPN-LTVVNDDFTTWPLPD-----GPLRFIGNLPFGTGTRMLRR 137 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDISPHV 194 ++ P L QK+ K + YG W Sbjct: 138 CLALG--PDRCREGVFLLQKQYTR-----KRTGAYGGNLFNAQWEPWYTFRRGLGFPRQE 190 Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTL---RQSLKRLGGE 247 F P P S + P P + ++ ++ F R T+ ++L R G Sbjct: 191 FAPVP--GSDTETLLVRSRPRPLAPWSRHAAYQRFVEDVFNTSRLTIGEAARALDRRAGP 248 Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277 L A + LR ++++ E + + + T Sbjct: 249 GWLRGARVPPGLRVKDITAEQWADLFHACT 278 >gi|34328034|ref|NP_899170.1| rRNA methylase [Staphylococcus sciuri] gi|21953224|emb|CAC86410.1| adenine methylase [Staphylococcus sciuri] gi|33352204|emb|CAE18145.1| rRNA methylase [Staphylococcus sciuri] Length = 243 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 24/254 (9%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKRNIDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + I N+PYNI T ++ T+ Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYNIFGNIPYNISTDIVKRI----TFES 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + L+ +K +R+ + L +L M+ + P F P P V S + Sbjct: 119 QAKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVL 173 Query: 206 IHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN- 263 I H I + + K + + + L +N QA N+ N Sbjct: 174 IVLERHQPLISKKDYKKYRSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINK 226 Query: 264 LSIEDFCRITNILT 277 LS E F I N Sbjct: 227 LSKEQFLSIFNSYK 240 >gi|313141396|ref|ZP_07803589.1| dimethyladenosine transferase dimethyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130427|gb|EFR48044.1| dimethyladenosine transferase dimethyltransferase [Helicobacter canadensis MIT 98-5491] Length = 152 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 8/156 (5%) Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I T L+ I P + ++ QKEV + A +N + LSVL +A Sbjct: 1 MPYYIATLLVIKAIKD----PLCKGCVVMTQKEVALKFCAIQNQSDFSALSVLAQSVGEA 56 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244 M+F++ P F P PKVTS V + P L L+++ + AF RKTL +L ++ Sbjct: 57 KMLFEVPPSAFVPQPKVTSAVFLIEKNHIPSSDFLVKLEELLKIAFSAPRKTLFNNLSKV 116 Query: 245 GGENL----LHQAGIETNLRAENLSIEDFCRITNIL 276 + L GI +N R + D+ R+ +L Sbjct: 117 YSKEKIMETLETLGIVSNKRPHEIDTTDYHRLLKLL 152 >gi|168705823|ref|ZP_02738100.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246] Length = 165 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 13/167 (7%) Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 +++ANLPY I T L+ N + P E + ++ Q E+ ER+ A N+ Y LSVL Sbjct: 1 KLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQ 57 Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237 + ++P F P PKV S ++ P+ + + ++ + RRK L Sbjct: 58 SVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNL 117 Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 RQ+L + L + GI+ LR+E L IE R+ + Sbjct: 118 RQALVGWPTGPREKKDVDAKLAELGIDGTLRSEALDIEQHLRLAAVF 164 >gi|2326854|emb|CAA70206.1| adenine methylase [Staphylococcus hominis] Length = 244 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 28/256 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q F+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQKFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TEKKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++ +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261 I + I + F K + + K++ +N L AGI+ Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224 Query: 262 ENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 NNISFEQFLSLFNSYK 240 >gi|261405179|ref|YP_003241420.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10] gi|261281642|gb|ACX63613.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10] Length = 290 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 12/189 (6%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+ L+ ++ + + + TV++IGAG G LT L A V+ IE D F L Sbjct: 21 QHLLISKRLIHDMIDLARIRSTDTVLDIGAGTGALTLPLAE-KAGHVLAIETDPAFVDKL 79 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 N + + Q D L++ + +P ++AN+PY+I T ++ + P Sbjct: 80 LGKMKDSSN-IRVKQSDFLEIPLPR-----NPFAVVANIPYSITTPIMGKLLECPGLP-- 131 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + LL + +R TA LS + ++ +SP F P P+V S ++ Sbjct: 132 LQRAVLLVEMGAAKRFTAVPIQDPR-ILSWRMQY--DIRLVRTVSPRHFAPPPQVDSAIL 188 Query: 207 HFIPHLNPI 215 P+ Sbjct: 189 TIHRRKKPL 197 >gi|164687690|ref|ZP_02211718.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM 16795] gi|457208|gb|AAC36915.1| 23S rRNA methlyase [Clostridium perfringens] gi|164603464|gb|EDQ96929.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM 16795] gi|1092864|prf||2102192A 23S rRNA methylase Length = 257 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 22/256 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + QNF+ N + K+ + + VIEIG G G++T+ L + V IE D+ + Sbjct: 15 SVSQNFITSKNTIYKLIKKTNISKNDFVIEIGPGKGHITEALCE-KSYWVTAIELDRSLY 73 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + N + +I D L K ++ +N+P+ I T+++ + + Sbjct: 74 GNLINKFKSK-NNVTLINKDFLNWKLPK----KREYKVFSNIPFYITTKIIKKLLLEELN 128 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + L+ +K +R +LS+L + ++ + F P P V Sbjct: 129 SP--TDMWLVMEKGSAKRFMGIPRE---SKLSLLLKTKFDIKIVHYFNREDFHPMPSVDC 183 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNL 259 +++F + + T +F + +L+ + +N +H GI N Sbjct: 184 VLVYF-KRKYKYDISKDEWNEYT--SFISKS---INNLRDVFTKNQIHAVIKYLGINLNN 237 Query: 260 RAENLSIEDFCRITNI 275 +E +S D+ ++ Sbjct: 238 ISE-VSYNDWIQLFRY 252 >gi|26347035|dbj|BAC37166.1| unnamed protein product [Mus musculus] Length = 160 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 7/131 (5%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 +FQ+E R+ A+ Y RLS+ T + + + + F P PKV S+V+ P Sbjct: 1 MFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKN 60 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIE 267 P P + + + F ++ KTL + K + LL + ++ + E+ SI Sbjct: 61 PPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPEDFSIA 120 Query: 268 DFCRITNILTD 278 D +I ILT Sbjct: 121 D--KIQQILTS 129 >gi|34394642|dbj|BAC83949.1| Ribosomal RNA adenine dimethylase-like protein [Oryza sativa Japonica Group] Length = 261 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 9/150 (6%) Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 ++L +I+ DA++ +F +F +AN+PY I + L+ + P + + TLL Sbjct: 15 AHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIAKLLFG---PYRFRAATLL 65 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 QKE R+ A Y RL+ A ++ D+S F P PKV S+++ P Sbjct: 66 LQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFVPMPKVDSSLVEIRPRAA 125 Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 L T+ FG++ KTL K+ Sbjct: 126 EPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 155 >gi|291402058|ref|XP_002717677.1| PREDICTED: transcription factor B2, mitochondrial [Oryctolagus cuniculus] Length = 397 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 122/324 (37%), Gaps = 59/324 (18%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + +++ PK+Y+ L + + +I S +E GPG LTQ LL GA KV Sbjct: 61 VCKHRLDPKRYVSSRGLAETLV--QILRGSQKDPRSLFLECNPGPGVLTQALLETGA-KV 117 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--- 130 + +E D+ F P L+ + + +LE++ D K+D K + PI I L N+G Sbjct: 118 VALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGIKA 177 Query: 131 ------------------------TRLLFNWISADTWPPFWESLTLLF--QKEVGERITA 164 +LL++ S + +F +KE + + Sbjct: 178 LPWSAGIPLKIIGIFPIKNERKALWKLLYDLYSCTSIYRHGRVELNMFISEKEYQKLMAN 237 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFF---------PSPKVTSTV---------I 206 KN Y LSVL + + + P F PK ++ I Sbjct: 238 PKNPNLYQVLSVLWQVACEIK-VLHVEPWSSFDVYTQNGKLKKPKHKDSLERMQQNLYFI 296 Query: 207 HFIPHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETN 258 P N P + + + FGKR +L +SL + ++L Q Sbjct: 297 RMTPRRNLFTENLTPINYDVFFHMVKHCFGKRNASLIEHLRSLSPVDAMDILMQTRKNEK 356 Query: 259 LRAENLSIEDFCRITNILTDNQDI 282 ++ ++ +DF R+ + ++D Sbjct: 357 VKITDMYPQDFKRLFETIECSKDY 380 >gi|15072727|emb|CAC47934.1| rRNA adenine-N6 methyltransferase [Bacteroides thetaiotaomicron] Length = 266 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 108/255 (42%), Gaps = 17/255 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 66 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + F +++ Q E +++ ++ Y +V +++++ P F P P Sbjct: 119 ENLENFL-GGSIVLQFEPTQKLFSR---KLYNPYTVFCHTFFDLKLVYEVGPESFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKR---RKT-LRQSLKRLGGENLLHQAGI 255 V S +++ +++ K KT L+ ++ + + G+ Sbjct: 175 VKSALLNIKRKHLFFDFKIKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRTISEKFGL 234 Query: 256 ETNLRAENLSIEDFC 270 N + LS + Sbjct: 235 NLNAQIVCLSPSQWL 249 >gi|118575664|ref|YP_875407.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum symbiosum A] gi|118194185|gb|ABK77103.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum symbiosum A] Length = 221 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 22/219 (10%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 + ++IA+S+G G TV+E+G G G LT+ L GAR +I +E++ + + + Sbjct: 1 MRSRQAARRIADSAGISPGDTVLEVGTGLGALTRELCGRGAR-IISVERNGRLYG--EAS 57 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149 +S H LE+ + D F ++NLPY+ R + + D + Sbjct: 58 ASLHCEGLELRRGD-------GFAVEDGFDVFVSNLPYSQSRRAVEWLVQRD-----FAR 105 Query: 150 LTLLFQKEV-GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 + QKE + + A + VL G + ++F ++ F P P+V S V+ Sbjct: 106 GIVTVQKEFAAKLMEADPR--RRRAIGVLAGHCFEMRVLFPVARSCFDPPPRVDSVVVEL 163 Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + ++ I F RRKT+R +K+ G E Sbjct: 164 AKRRTIPGGVVRAVNGI----FSYRRKTMRGIMKQFGRE 198 >gi|329930026|ref|ZP_08283651.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5] gi|328935425|gb|EGG31897.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5] Length = 288 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 97/244 (39%), Gaps = 17/244 (6%) Query: 15 SHYKIIPKK--YMG-QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71 ++ KK Q+ L+ ++ + + + TV++IGAG G LT L A Sbjct: 6 KKHREKLKKPSNFSAQHLLISKRLIHDMIDLAQIRSTDTVLDIGAGTGALTLPLAE-KAG 64 Query: 72 KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 V+ IE D F L N + + Q D L++ + +P ++AN+PY+I T Sbjct: 65 HVLAIETDPAFVDKLLGKMKDSSN-IRVKQSDFLEIPLPR-----NPFAVVANIPYSITT 118 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191 ++ + P + LL + +R TA LS + ++ +S Sbjct: 119 PIMGKLLECPGLP--LQRAALLVEMGASKRFTAVPIQDPR-ILSWRMQY--DIRLVRTVS 173 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENL 249 PH F P P+V S ++ P+ K A+G R R L +L + Sbjct: 174 PHHFAPPPQVDSAILTIHRRKKPLIAASSQPKFTALAAYGLRDARLPLFAALSGVFTPPQ 233 Query: 250 LHQA 253 + + Sbjct: 234 MAKL 237 >gi|167044871|gb|ABZ09538.1| putative ribosomal RNA adenine dimethylase [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 217 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 28/241 (11%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 K I ++ V+EIG G G L L A++V IEKDQ K + N Sbjct: 2 AKSIVSNANITRNDFVLEIGTGYGILIPYLCK-NAKQVFSIEKDQNLHLSAKSNFHDYTN 60 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 L + D D ++NLPY+ +R W+ + ++ Q Sbjct: 61 -LVLEYGDGFNSDHNF-------SVFVSNLPYS-KSRFAIEWLLQKK----FSRAVIMVQ 107 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 KE E++++ + +SVL + + + ++ FFP PKV S VI Sbjct: 108 KEFSEKLSSNEKHM---AISVLANYGFRIKFLMNVKKSNFFPMPKVDSVVILLEQKR--- 161 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 + L + F RRKTL+ LK+ G + R + LS ++ +I Sbjct: 162 -IISKVLISTVKRIFSYRRKTLQNILKQFG-------LNSTSKKRLDELSGDEIIKIAQK 213 Query: 276 L 276 + Sbjct: 214 I 214 >gi|730033|sp|Q00014|ERMG_LACRE RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|148728|gb|AAA98096.1| methylase [Plasmid pGT633] Length = 244 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 30/257 (11%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ + L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFSFELAKRC-NYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ ++ N ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGNIPYNISTDIIRKIVFESTATE 122 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + L++ +++ I F P P+V S++ Sbjct: 123 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173 Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260 I H + I + + K + + +L +N +Q A I+ Sbjct: 174 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYIKLFSKNQFYQALKYARIDDL-- 224 Query: 261 AENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 225 -NNISFEQFLSLFNSYK 240 >gi|299148760|ref|ZP_07041822.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23] gi|301311645|ref|ZP_07217571.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3] gi|313886992|ref|ZP_07820692.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas asaccharolytica PR426713P-I] gi|298513521|gb|EFI37408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23] gi|300830386|gb|EFK61030.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3] gi|312923518|gb|EFR34327.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas asaccharolytica PR426713P-I] Length = 266 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 108/255 (42%), Gaps = 17/255 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 66 ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + F +++ Q E +++ ++ Y +V +++++ P F P P Sbjct: 119 ENLENFL-GGSIVLQFEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKR---RKT-LRQSLKRLGGENLLHQAGI 255 V S +++ +++ K KT L+ ++ + + G+ Sbjct: 175 VKSALLNIKRKHLFFDFKIKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRTISEKFGL 234 Query: 256 ETNLRAENLSIEDFC 270 N + LS + Sbjct: 235 NLNAQIVCLSPSQWL 249 >gi|295673178|ref|XP_002797135.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01] gi|226282507|gb|EEH38073.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01] Length = 309 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 11/145 (7%) Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + L F ++ + P L+FQ+E R+ A+ Y RLSV + + Sbjct: 62 DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + + F P P V S+V+ +P + + + AF ++ KT+R S LG Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGTT 176 Query: 248 NLLHQAGIETNLRA----ENLSIED 268 ++L +E+N R N+ +ED Sbjct: 177 SVLD--MLESNYRTWCAQNNIPVED 199 >gi|416234|dbj|BAA03626.1| kasugamycin dimethyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 204 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 14/205 (6%) Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWIS 139 ILK + + LEIIQ D L++D ++ + I II+N PY I + +LF + Sbjct: 1 MVEILKTKFNH--SNLEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTL- 57 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + QKEV RI + KN +Y LS+ + ++ F ++ +F+P P Sbjct: 58 --QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIP 115 Query: 200 KVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENLLHQ 252 KV S +I + + + + F +RKT + L Sbjct: 116 KVDSAIISLTFNNIYKKQINDDKKFIEFVRTLFNNKRKTILNNLNNIIQNKNKALEYLKM 175 Query: 253 AGIETNLRAENLSIEDFCRITNILT 277 I +NLR E L I+++ ++ N++ Sbjct: 176 LNISSNLRPEQLDIDEYIKLFNLIY 200 >gi|400267|sp|Q02607|ERMU_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein gi|143943|gb|AAA63165.1| methyltransferase [Bacteroides fragilis] Length = 266 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 22/259 (8%) Query: 22 KKYM-----GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 KK + GQ+F +D ++K + + TV++IGAG G LT LL + A V+ I Sbjct: 3 KKKLPLRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAI 61 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 E D L+ + S N ++++ D KF P ++++N+PY I + + F Sbjct: 62 ENDTALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FK 114 Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + F +++ Q E +++ ++ Y +V +++++ P F Sbjct: 115 ILMFENLENFL-GGSIVLQFEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFL 170 Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKR---RKT-LRQSLKRLGGENLLH 251 P P V S +++ +++ K KT L+ ++ + Sbjct: 171 PPPTVKSALLNIKRKHLFFDFKIKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRTISE 230 Query: 252 QAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249 >gi|170780459|ref|YP_001716198.1| hypothetical protein pRW35_1 [Streptococcus pyogenes] gi|158523369|gb|ABW70817.1| ermT [Streptococcus pyogenes] Length = 242 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 32/257 (12%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + +I + +IEIG+G G+ T L V IE D + I Sbjct: 9 SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRI 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 K+ + ++I D L+ F K + +I N+PYNI T ++ + T Sbjct: 68 TKNKLIE---NFQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 120 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + F K + + L++ +++ I F P P+V S++ Sbjct: 121 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 171 Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260 I H + I + + K + + +L +N +Q A I+ Sbjct: 172 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYIKLFSKNQFYQALKYARIDDL-- 222 Query: 261 AENLSIEDFCRITNILT 277 N+S E F + N Sbjct: 223 -NNISFEQFLSLFNSYK 238 >gi|226292329|gb|EEH47749.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb18] Length = 310 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 11/145 (7%) Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187 +I + L F ++ + P L+FQ+E R+ A+ Y RLSV + + Sbjct: 62 DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + + F P P V S+V+ +P + + + AF ++ KT+R S LG Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGTT 176 Query: 248 NLLHQAGIETNLRA----ENLSIED 268 ++L +E+N R N+ +ED Sbjct: 177 SVLD--MLESNYRTWCAQNNIPVED 199 >gi|325104371|ref|YP_004274025.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM 12145] gi|324973219|gb|ADY52203.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM 12145] Length = 270 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 111/257 (43%), Gaps = 19/257 (7%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++ + G V++IGAG G LT L+ + VI IE D Sbjct: 7 PVRFTGQHFTIDTILINDAIRLAEIQKGDVVLDIGAGSGFLTVHLVKH-STNVIAIENDN 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + L+ + N + II +D+ KF ++++N+P+ + + +L + + Sbjct: 66 RLVSELRSKFRVNKN-VTIIG-----LDYRKFSVPQKNFKVVSNIPFALTSEILKSLMYT 119 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + F++ L+ Q E +++ + ++ +V + +++I+P F P P Sbjct: 120 N--IEFFKQGCLIMQFESAKKLVRK---KYFNPYTVFYHTFFEVRFIYEINPESFMPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKR-----RKT-LRQSLKRLGGENLLHQA 253 V S ++ E +K ++ F R KT L++ ++ L Sbjct: 175 VKSALVKIGKKKCTDNIGAEMKEKYLSFLHFMMRFPDLPSKTVLKKLFRKQQVRELAESY 234 Query: 254 GIETNLRAENLSIEDFC 270 G+ + ++S E F Sbjct: 235 GLVLDKPVFSMSAEQFL 251 >gi|212694246|ref|ZP_03302374.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855] gi|212662747|gb|EEB23321.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855] Length = 218 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 22/234 (9%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 + + EIGAG G+ T L+ V IE D + + ++ +PN +I+ DD Sbjct: 2 LDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEVTRNKLLNYPN-YQIVNDDI 59 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 LK F +P +I N+PYNI T ++ + + + + E A Sbjct: 60 LKFT----FPSHNPYKIFGNIPYNISTNIIRKIVFESSATISYL---------IVEYGFA 106 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224 + L++L +++ I + F P PKV S +I P + KK Sbjct: 107 KSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSALIVL--KRKPAKMAFKERKK 164 Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENLSIEDFCRITNILT 277 E F K + + ++L +N ++A + N+S E F + N Sbjct: 165 --YETFVM--KWVNKEYEKLFTKNQFNKALKYARIYDINNISFEQFVSLFNSYK 214 >gi|207340778|gb|EDZ69021.1| YPL266Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 204 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 I+N PY I + L+F I+ P L+FQ+E R+ A+ Y RLS Sbjct: 11 CISNTPYQISSPLVFKLINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQM 67 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 T + + + F P P+V S+V+ + + F ++ +T+ Sbjct: 68 WANVTHIMKVGKNNFRPPPQVESSVVRLEIKNPRPQVDYNEWDGLLRIVFVRKNRTISAG 127 Query: 241 LKRLGGENLLHQ 252 K ++L + Sbjct: 128 FKSTTVMDILEK 139 >gi|15811125|gb|AAL08808.1|AF308662_1 hypothetical dimethyl adenosine transferase [Ehrlichia ruminantium] Length = 124 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y I PKK + Q F+ +I KI +G++ ++IEIG G G +T +L +K+I I Sbjct: 5 YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 EKD + PI I + + E I DAL +D P+++IANLPY+I T LL Sbjct: 65 EKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLRNIA--KPPVKVIANLPYSIATLLLIK 122 Query: 137 WI 138 WI Sbjct: 123 WI 124 >gi|315645554|ref|ZP_07898678.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453] gi|315279032|gb|EFU42342.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453] Length = 287 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 23/218 (10%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M NK+H + L P QN ++ ++ + + + TV++IGAG G Sbjct: 1 MFKKNKNH--RDPLKTSSNFP----SQNMIISKRLIHDMIDLARIHPHETVLDIGAGAGA 54 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT L A KV+ IE D L D + N +E+ Q D L+ S P Sbjct: 55 LTFPLAEKAA-KVLAIEIDSVLIHKLLDKMGERGN-IEVKQCDFLETSLP-----SKPFV 107 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++AN+PY+I T + + P ++ + E+ A+ + H R + W Sbjct: 108 VVANIPYSITTPIFGKLL--HPAVPMQRAVI------LVEKGAAKGFTSHSIRNPRILNW 159 Query: 181 R--TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216 R + ++ +SP F P PKV S ++ P+ Sbjct: 160 RMQYEIRLVRTVSPDHFAPPPKVDSAILSIRRREQPLV 197 >gi|322779454|gb|EFZ09646.1| hypothetical protein SINV_04081 [Solenopsis invicta] Length = 148 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 28/148 (18%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 +FQ+E ER+ A+ Y RLS+ T + M+ + + F P PKV S V+ P Sbjct: 1 MFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRN 60 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----------------GI- 255 P P + +T+ AF ++ KTL + K+ +L + I Sbjct: 61 PPPPINYQEWDSLTRIAFMRKNKTLSAAFKQTTVVTMLEKNYKIHCSLNNKIVPNNFDIK 120 Query: 256 -----------ETNLRAENLSIEDFCRI 272 N RA + +DF R+ Sbjct: 121 HLINHVLEKADSKNKRARTMDTDDFIRL 148 >gi|23098376|ref|NP_691842.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831] gi|22776602|dbj|BAC12877.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831] Length = 244 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 26/254 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + VIEIG+G G+ T+ L+ + +R V IE D+ + Sbjct: 10 QNFITSKKHVKEILDHTSINKQDNVIEIGSGKGHFTKELVKM-SRWVHSIEIDEDLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + N +++I D LK + F+ + +I N+P+NI T ++ S Sbjct: 69 QKAVKPFQN-IKVIHTDILKFN----FHKNKDYKIFGNIPFNISTDIVKKIASESQSKFS 123 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + + E+ A++ L +L ++ + F P P V S +I Sbjct: 124 YL---------IVEKGFAKRLQNTKRALGLLLMVEMDIKILTKVPRTYFHPRPSVDSVLI 174 Query: 207 HFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA--EN 263 H I + + + + + L +N QA + A N Sbjct: 175 VLERHEPLILKKDYKKYQSFVY-------RWVNKEYHALFTKNQFRQALRHAKI-ADLNN 226 Query: 264 LSIEDFCRITNILT 277 ++ + F + N Sbjct: 227 VNFKQFLSLFNSYK 240 >gi|164604805|gb|ABY61963.1| erythromycin resistance methylase [Streptococcus suis] Length = 229 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 26/243 (10%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLN 58 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 R+ +I D L+ F +I+ N+PY++ T+++ + + + F Sbjct: 59 TRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGF 114 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 K + + L +L + + + F P PKV S +I H Sbjct: 115 YKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTD 165 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCR 271 +P L F K + + ++L +N HQA NLS E Sbjct: 166 VPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLS 217 Query: 272 ITN 274 I N Sbjct: 218 IFN 220 >gi|256825598|ref|YP_003149558.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus sedentarius DSM 20547] gi|256688991|gb|ACV06793.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus sedentarius DSM 20547] Length = 244 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 22/232 (9%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 +IEIG G G LT L LG R V +E D + L + H +E++ DD L Sbjct: 5 DGPIIEIGPGDGALTSPLAQLG-RPVTAVEIDTRLAQRLAERLGPH---VEVVADDFLAY 60 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 ++ ++ NLP++ T +L + P W +L Q EV R Sbjct: 61 RLPTSAHV-----LVGNLPFHQTTAMLRQIL----HSPAWTDAIVLVQWEVARRRAGVGG 111 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKI 225 + ++ T+ + F P P V ++ +P+ P + Sbjct: 112 ATM---MTAQWAPWFDFTLHSRVPARAFTPRPGVDGGILAIHRREHPLLSPARRRQFHAL 168 Query: 226 TQEAFGKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273 + + L Q L R + L + G+ T +++ +E + + Sbjct: 169 VHRVYTGPGRGLAQILARTTALGSPQAWLTRHGMNTADLPKDMPVEVWVDLF 220 >gi|313228792|emb|CBY17943.1| unnamed protein product [Oikopleura dioica] Length = 193 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQ+ L + +++ + E +G L T++EIG G GN+T LL +KVI +E D++ Sbjct: 37 YGQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVA 95 Query: 85 ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 ++ P ++L II DALK + FF++ ++ANLPY I + + F + Sbjct: 96 EVQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLLLHR- 148 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 P F ++ + +E E + S +S++ + Sbjct: 149 -PMFRVAVLMGVYEERRELASQGPLSRDLIAISIIACY 185 >gi|322801725|gb|EFZ22327.1| hypothetical protein SINV_09620 [Solenopsis invicta] Length = 155 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++ I+ K GQ+ L + +++ + E + V+EIG G GN+T +L A+KV Sbjct: 16 VARQGILFNKDKGQHILKNPLVIQTMVEKAALRATDVVLEIGPGTGNMTVKMLD-KAKKV 74 Query: 74 IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 I E D + L+ + ++L+I+ D LK D FF++ +AN+PY I + Sbjct: 75 IACEIDPRMVAELQKRVQGTVYQSKLQIVLGDVLKSDLP-FFDLC-----VANIPYQISS 128 Query: 132 RLLFNWISADTWPPFWESLTLLFQKEV 158 L+F +S P + ++ E Sbjct: 129 PLVFKLLSHR---PLFSLQLSSYKMET 152 >gi|195506441|ref|XP_002087207.1| GE14674 [Drosophila yakuba] gi|194186922|gb|EDX00506.1| GE14674 [Drosophila yakuba] Length = 160 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 +TL FQKEV +RI A RLSV++ T+ M F I F P P+V V+ I Sbjct: 1 MTLTFQKEVADRICAPVGGEQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLI 60 Query: 210 PHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLR 260 P P ++++ + F R+K R+ L L +A ++ LR Sbjct: 61 PLKRPKTQLPFPLVERVVRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDTLR 120 Query: 261 AENLSIEDFCRITNILTDN 279 + L++E R+ + +++ Sbjct: 121 SFELTVEQCLRLAEVYSEH 139 >gi|159161813|gb|ABW95899.1| ErmB [uncultured bacterium] Length = 213 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + ++ V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKHVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 +R+ +I D L+ F +I+ N+PYN+ T+++ + + + Sbjct: 59 LNSRVTLIHQDILQFQ----FPNKQRYKIVGNIPYNLSTKIIKKVVFESHASDIYLVVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|146302849|ref|YP_001190165.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348] gi|145701099|gb|ABP94241.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348] Length = 217 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 35/216 (16%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 QNFL+D I+ +I + L +IEIG G GNL++ L + IE D + P Sbjct: 3 YSQNFLVDQEIISRIVGYASELR--PLIEIGCGKGNLSRFL-----NPDVCIELDSRLLP 55 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L + +Q DA K+ + +I+++LPY+I + D++P Sbjct: 56 FLSQYNP--------VQGDARKLPVSR-------GQIVSSLPYSITSDFFVEVSRLDSFP 100 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 L L+ Q++ +I LS L + + + + I P F P PKV S+ Sbjct: 101 ----RLLLVLQEDFVNKILDYP-----TFLSFLLNYYYRISELMVIPPKAFRPVPKVFSS 151 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 ++ N E I + R KTL+ + Sbjct: 152 LVLLERRRNYNEIVTE----IIKCLSSYRNKTLKNA 183 >gi|159161826|gb|ABW95905.1| ErmB [uncultured bacterium] Length = 213 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 +R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNSRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHVSDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K +++ ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|164604803|gb|ABY61962.1| erythromycin resistance methylase [Streptococcus suis] Length = 229 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 26/243 (10%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLN 58 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 R+ +I D L+ F +I+ N+PY++ T+++ + + + F Sbjct: 59 TRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGF 114 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 K + + L +L + + + F P PKV S +I H Sbjct: 115 YKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTD 165 Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCR 271 +P L K + + ++L +N HQA NLS E Sbjct: 166 VPDKYWKLYT------HFVSKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLS 217 Query: 272 ITN 274 I N Sbjct: 218 IFN 220 >gi|94995100|ref|YP_603198.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes MGAS10750] gi|282882751|ref|ZP_06291358.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B] gi|304439175|ref|ZP_07399093.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|307067521|ref|YP_003876487.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200] gi|313892158|ref|ZP_07825751.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII 345-E] gi|326802744|ref|YP_004320562.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] gi|2190972|gb|AAB60941.1| erythromycin resistance methylase [Streptococcus pyogenes] gi|94548608|gb|ABF38654.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes MGAS10750] gi|215263203|emb|CAQ56289.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] gi|281297412|gb|EFA89901.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B] gi|304372307|gb|EFM25895.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|306409058|gb|ADM84485.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus pneumoniae AP200] gi|313119296|gb|EFR42495.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII 345-E] gi|326650330|gb|AEA00513.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] Length = 243 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 98/253 (38%), Gaps = 24/253 (9%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K + +I N+PYNI T ++ + Sbjct: 69 KKAVEPFQN-IKVIHEDILKFSFPKNTD----YKIFGNIPYNISTDIVKKI----AFDSQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ ++ +R+ + L +L ++ + F P P V S +I Sbjct: 120 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174 Query: 207 HFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264 H + + + K + + L +N L Q N+ + L Sbjct: 175 VLERHKPFILKKDYKKYRFFVY-------KWVNREYHVLFTKNQLRQVLKHANVTDLDKL 227 Query: 265 SIEDFCRITNILT 277 S E F + N Sbjct: 228 SNEQFLSVFNSYK 240 >gi|291386470|ref|XP_002709749.1| PREDICTED: transcription factor B2, mitochondrial-like [Oryctolagus cuniculus] Length = 392 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 120/324 (37%), Gaps = 59/324 (18%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + +++ PK+Y+ L + + I S E GPG LTQ LL GA KV Sbjct: 56 VCKHRLDPKRYVSSRGLAETLVP--ILRGSQKDPRSLFSECNPGPGVLTQALLETGA-KV 112 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--- 130 + +E D+ F P L+ + + +LE++ D K+D K + PI I L N+G Sbjct: 113 VALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGIKA 172 Query: 131 ------------------------TRLLFNWISADTWPPFWESLTLLF--QKEVGERITA 164 +LL++ S + +F +KE + + Sbjct: 173 LPWSAGIPLKIIGIFPIKNERKALWKLLYDLYSCTSIYRHGRVELNMFISEKEYQKLMAN 232 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFF---------PSPKVTSTV---------I 206 +N Y LSVL + + + P F PK ++ I Sbjct: 233 PRNPNLYQVLSVLWQVACEIK-VLHVEPWSSFDVYTQNGQLKKPKHKDSLERMQQNLYFI 291 Query: 207 HFIPHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETN 258 P N P + + + FGKR +L +SL + ++L Q Sbjct: 292 RMTPRRNLFTENLTPINYDVFFHMVKHCFGKRNASLIEHLRSLSPVDAMDILMQTRKNEK 351 Query: 259 LRAENLSIEDFCRITNILTDNQDI 282 ++ ++ +DF R+ + ++D Sbjct: 352 VKITDMYPQDFKRLFETIECSKDY 375 >gi|159161720|gb|ABW95854.1| ErmB [uncultured bacterium] gi|159161724|gb|ABW95856.1| ErmB [uncultured bacterium] Length = 213 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVDSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|12081903|dbj|BAB20748.1| ErmGM [Staphylococcus aureus] gi|57207872|dbj|BAD86539.1| ermGM [Staphylococcus aureus] Length = 244 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 94/258 (36%), Gaps = 28/258 (10%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNF+ + KI + V EIG+G G+ T L+ V VIE D Sbjct: 7 KFSQNFITSKRHINKIMSNLELNRNDNVFEIGSGKGHFTLELV-QKCNYVTVIEIDSNLC 65 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++ + + N II D L+ F + +I N+PY I T ++ + Sbjct: 66 IQTQNKVTNYDN-FRIINKDILQFK----FPNNKAYKIYGNIPYYISTDIVRKIVFESEA 120 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L++L +++ I F P PK+ S Sbjct: 121 TVSYLIVEEGFAKRLLNTNRS---------LALLLMTEVDISILSKIPKEYFHPKPKINS 171 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNL 259 ++I H P + K F K + Q +L +N ++ A I+ Sbjct: 172 SLIILKRH----PSKISYKDKKMYNNFVM--KWVNQEYSKLFTKNQFNKALNYAKIKDLK 225 Query: 260 RAENLSIEDFCRITNILT 277 N++ E F + N Sbjct: 226 ---NINFEQFLSVFNSYK 240 >gi|159161778|gb|ABW95882.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIRKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|309777023|ref|ZP_07671992.1| putative rRNA (adenine-N(6)-)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|308915233|gb|EFP61004.1| putative rRNA (adenine-N(6)-)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] Length = 274 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 18/238 (7%) Query: 23 KYMG--QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 K +G QNFL++ +++++ S VIEIG G G +T +L + A +V+ +E DQ Sbjct: 2 KNLGYSQNFLVNKKLVERLISKSNIDVTDYVIEIGPGKGIITDVL-SQHAGEVVAVEYDQ 60 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + + L S + + I D LK ++ +I +N+P+ I ++ Sbjct: 61 ELYNNLVRYHSH--DNVTYIFGDFLKYKLP----LNRRYKIFSNIPFQITADIIRKLTDD 114 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 P + ++ Q+E ++ + G + + + K + FFPSP Sbjct: 115 VNPPS---DINIIIQREAAKKNCGIPLQKYEGFRAAIIKAQYKVEITHSFKRSDFFPSPN 171 Query: 201 VTSTVIHFIPHLNPI-PCCLESLKKITQEAFGK---RRKTLRQSLKRLGGENLLHQAG 254 V + ++H + + L++ K + AF + +T ++ L L + + G Sbjct: 172 VDTVMLHMQLWDDRLSGDDLQNYKDLV--AFFYTNIKGETAKERLSILFSNEQIKRLG 227 >gi|159161820|gb|ABW95902.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|333031235|ref|ZP_08459296.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM 18011] gi|18652656|gb|AAK07612.2|AF319779_1 macrolide-lincosamide-streptogramin B resistance protein [Bacteroides coprosuis DSM 18011] gi|332741832|gb|EGJ72314.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM 18011] Length = 266 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 110/254 (43%), Gaps = 17/254 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + S TV++IGAG G LT LL KVI IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIKESNINQHDTVLDIGAGKGFLTVHLLK-NVDKVIAIENDV 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ H ++++ D + F P ++++N+P+ I + + + + Sbjct: 66 ALSQHLRKKF-IHAQNVQVVSCD-----YRNFVVPKVPFKVVSNIPFGITSDIFSSLMFE 119 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + ++ +++ Q E +++ + S Y L+VL +++I+P F P P Sbjct: 120 NV--EYFLCGSIILQSEPAKKLFS---SKVYNPLTVLYHTYYDLKFLYEINPESFLPPPT 174 Query: 201 VTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAGI 255 V S ++ + L+ K T++ ++K + + + + G+ Sbjct: 175 VKSALLRIERKQISLDIGLKVKYLNFVSYMLQKPDLTVKTAMKSIFRKKQVRSISEKFGV 234 Query: 256 ETNLRAENLSIEDF 269 + N + L+ + Sbjct: 235 DLNSKIVCLTPNQW 248 >gi|159161782|gb|ABW95884.1| ErmB [uncultured bacterium] gi|159161784|gb|ABW95885.1| ErmB [uncultured bacterium] gi|159161805|gb|ABW95895.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa] gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa] Length = 210 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 17/190 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + H+ L+ P+K +GQ+++L+ I +++ S+ +G ++EIG G G+LT + Sbjct: 26 DDYHATLKALNSRDRRPRKSLGQHYMLNDEINEQLVASANVEEGDLILEIGPGTGSLTNV 85 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----------FEKFF 113 L+ GA V+ IEKD ++++ + NR +++Q+D +K Sbjct: 86 LIDAGA-TVLAIEKDAHMAALVRERFADT-NRFKVLQEDFIKCHIRSHMLSMLESMGSLS 143 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172 +++AN+P+NI T ++ + + + LL Q E R+ + Y Sbjct: 144 EKPRYAKVVANIPFNISTDVIKQLL---PTGDIFSEIVLLLQDETALRLVESSLRTSEYR 200 Query: 173 RLSVLTGWRT 182 +++ + + Sbjct: 201 PINIFVNFYS 210 >gi|159161762|gb|ABW95874.1| ErmB [uncultured bacterium] gi|159161790|gb|ABW95888.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161731|gb|ABW95859.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PYN+ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K +++ ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|34147930|gb|AAQ62543.1| erythromycin resistance methylase [Streptococcus sp. 'group G'] Length = 219 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 26/239 (10%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274 L F K + + ++L +N HQA NLS E I N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLSIFN 216 >gi|159161751|gb|ABW95869.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTHVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161822|gb|ABW95903.1| ErmB [uncultured bacterium] gi|159161828|gb|ABW95906.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PYN+ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K +++ ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161798|gb|ABW95892.1| ErmB [uncultured bacterium] gi|159161811|gb|ABW95898.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161788|gb|ABW95887.1| ErmB [uncultured bacterium] Length = 213 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F + + + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSERL-K 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis thaliana gb|AF051326 and contains a Ribosomal RNA Adenine Dimethylases PF|00398 domain. This gene may be cut off Length = 239 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 93/190 (48%), Gaps = 17/190 (8%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64 + HS L+ P+K +GQ+++L+ +I ++A ++ +G V+EIG G G+LT + Sbjct: 55 DDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNV 114 Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113 L+ LGA V+ IEKD ++ + + ++ +++Q+D +K Sbjct: 115 LINLGA-TVLAIEKDPHMVDLVSERFAG-SDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172 Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172 S+ ++++NLP+NI T ++ + + + LL Q E R+ + Y Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRLVEPALRTSEYR 229 Query: 173 RLSVLTGWRT 182 +++L + + Sbjct: 230 PINILINFYS 239 >gi|159161755|gb|ABW95871.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PYN+ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161757|gb|ABW95872.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K +++ ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|284041860|ref|YP_003392200.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM 14684] gi|283946081|gb|ADB48825.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM 14684] Length = 256 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 111/263 (42%), Gaps = 23/263 (8%) Query: 21 PKKY-MGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ + QNF++D L+ + ++ V+++GAG G +T L AR V+ +E+ Sbjct: 8 ARRSALAQNFIVDERALRTLLDAVPLDAARDVVVDLGAGRGAVTAQLAPRAAR-VLAVER 66 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D + L+ +++ +E+++ DA V F S+P +++ANLP+N GT L+ + Sbjct: 67 DPAWAHELRTRAAREWRNVEVVEGDARAVAFP-----SAPFKVVANLPFNAGTGLVRRLL 121 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + ++ Q E R+ GR + + I F P Sbjct: 122 AD---GHGLAGAAVVLQLEAARRLAGG------GRFGATWAPWFELAVGARIPARAFRPV 172 Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLHQ 252 P+V + V+ P + ++ + F +T+ L+ R +L Sbjct: 173 PRVDAAVLTVRARQPALLSPAAFAAHAQLVDKVFAASGQTVAARLQRAVGRRRAARMLDA 232 Query: 253 AGIETNLRAENLSIEDFCRITNI 275 A +E +++ E + R+T + Sbjct: 233 AALEPRATLGDVAPEVWARLTRV 255 >gi|159161759|gb|ABW95873.1| ErmB [uncultured bacterium] gi|159161776|gb|ABW95881.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|3646270|emb|CAA08815.1| putative dimethyladenosine transferase [Homo sapiens] Length = 157 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 7/126 (5%) Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217 R+ A+ Y RLS+ T + + + + F P PKV S+V+ P P P Sbjct: 3 FALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPI 62 Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFCRI 272 + + + F ++ KTL + K + LL + + + E+ SI D +I Sbjct: 63 NFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIAD--KI 120 Query: 273 TNILTD 278 ILT Sbjct: 121 QQILTS 126 >gi|159161816|gb|ABW95900.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PYN+ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K +++ ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|159161716|gb|ABW95852.1| ErmB [uncultured bacterium] gi|159161739|gb|ABW95863.1| ErmB [uncultured bacterium] gi|159161747|gb|ABW95867.1| ErmB [uncultured bacterium] gi|159161753|gb|ABW95870.1| ErmB [uncultured bacterium] gi|159161772|gb|ABW95879.1| ErmB [uncultured bacterium] gi|159161800|gb|ABW95893.1| ErmB [uncultured bacterium] gi|159161803|gb|ABW95894.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161780|gb|ABW95883.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + L Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVV----FESHASDIYL 110 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + ++ +R + L +L + + + F P PKV S +I H Sbjct: 111 IVEEGFYKRTLGIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161718|gb|ABW95853.1| ErmB [uncultured bacterium] gi|159161726|gb|ABW95857.1| ErmB [uncultured bacterium] gi|159161743|gb|ABW95865.1| ErmB [uncultured bacterium] gi|159161749|gb|ABW95868.1| ErmB [uncultured bacterium] gi|159161770|gb|ABW95878.1| ErmB [uncultured bacterium] gi|159161796|gb|ABW95891.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161824|gb|ABW95904.1| ErmB [uncultured bacterium] Length = 213 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|159161809|gb|ABW95897.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PYN+ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|326513775|dbj|BAJ87906.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 227 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 +L+ + +++ ++G G V+EIG G G+L L V+ +EKD+ +++D Sbjct: 1 MLNARVNEELVAAAGVEVGDVVLEIGPGTGSL-TAALLAAGATVVAVEKDKHMATLVRDR 59 Query: 90 SSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWISA 140 +L++I++D K F +++ANLP+N+ T ++ + Sbjct: 60 FGST-EQLKVIEEDITKFHVHSHFLPILDEKSRGTKKYAKVVANLPFNVSTEVVKQIL-- 116 Query: 141 DTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + + L+ Q E R+ A +P Y ++V + ++ F + FFP P Sbjct: 117 -PMGDVFSVMVLMLQDEAALRLANASIQTPEYRPINVFVNFYSEPEYKFKVERANFFPQP 175 Query: 200 KVTSTVIHFIPH---LNPIPCCLESLK 223 V VI F P +S Sbjct: 176 TVDGGVIRFKIKDAGEYPPVSSNKSFF 202 >gi|159161722|gb|ABW95855.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKEVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----HTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161733|gb|ABW95860.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TNVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|290559283|gb|EFD92620.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 262 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 107/241 (44%), Gaps = 27/241 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 M ++ ++ + I GQNFL+D N+L+ + + T+++IGAG G++ Sbjct: 1 MVTLRETITKLVKDFDIKGDNDSGQNFLVDENVLEIEINEAHLVSEDTILDIGAGFGSIE 60 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 VI IE+D + + L D + N ++I+ DAL + + +F +I+ Sbjct: 61 TKASKKC--HVIAIERDIKCYSYLIDKYEINAN-IQIVNADALNMIYPEF------TKIV 111 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 +N PYNI R++ + + ++ K + + + + ++ + S + Sbjct: 112 SNPPYNIADRIIEKISHYN-----FADSIMILPKTMADELCSIQSHTSF---SAINKLFM 163 Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 + + ++ FFP P+VTS ++ N I Q+ F +R TL+ +++ Sbjct: 164 EFYKIMEVERTSFFPEPRVTSVMVRIKKKEN----------NILQDTFRRREMTLKNAIR 213 Query: 243 R 243 Sbjct: 214 N 214 >gi|159161735|gb|ABW95861.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYRKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161737|gb|ABW95862.1| ErmB [uncultured bacterium] gi|159161745|gb|ABW95866.1| ErmB [uncultured bacterium] gi|159161768|gb|ABW95877.1| ErmB [uncultured bacterium] gi|159161794|gb|ABW95890.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|159161766|gb|ABW95876.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRASDIYLVVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHPQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161792|gb|ABW95889.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 21/221 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 +P L F K + + ++L +N HQA Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQA 200 >gi|159161764|gb|ABW95875.1| ErmB [uncultured bacterium] Length = 213 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGRGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|23499331|gb|AAN37395.1| erythromycin-resistant methylase [Streptococcus pyogenes] Length = 238 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 28/252 (11%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K + +I N+PYNI T ++ + Sbjct: 69 KKAVESFQN-IKVIHEDILKFSFPKNTD----YKIFGNIPYNISTDIVKKI----AFDSQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ ++ +R+ + L +L ++ + F P P V S +I Sbjct: 120 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174 Query: 207 HFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 H + + + K + + L +N L Q N+ +L Sbjct: 175 VLERHKPFILKKDYKKYRFFVY-------KWVNREYHVLFTKNQLRQVLKHANVT--DLD 225 Query: 266 I---EDFCRITN 274 E F + N Sbjct: 226 KLXNEQFLSVFN 237 >gi|164604807|gb|ABY61964.1| erythromycin resistance methylase [Streptococcus suis] Length = 228 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 26/242 (10%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNT 58 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 R+ +I D L+ F +I+ ++PY++ T+++ + + + F Sbjct: 59 RVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFY 114 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 K + + L +L + + + F P PKV S +I H + Sbjct: 115 KRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDV 165 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRI 272 P L F K + + ++L +N HQA NLS E C Sbjct: 166 PDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVCLF 217 Query: 273 TN 274 N Sbjct: 218 FN 219 >gi|225350652|gb|ACN88190.1| adenine-N6 methyltransferase [Streptococcus pyogenes] gi|225350654|gb|ACN88191.1| adenine-N6 methyltransferase [Streptococcus pyogenes] Length = 180 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 15/188 (7%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ ++PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 Query: 204 TVIHFIPH 211 +I H Sbjct: 171 VLIKLTRH 178 >gi|258411260|ref|ZP_05681537.1| rRNA methylase Erm [Staphylococcus aureus A9763] gi|257839989|gb|EEV64456.1| rRNA methylase Erm [Staphylococcus aureus A9763] Length = 221 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 24/236 (10%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 VIEIG+G G+ T+ L+ + +R V IE D + K+ + N +++IQ D Sbjct: 5 NISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEAVNPSEN-IKVIQTD 62 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 LK F K N +I N+PYNI T ++ T+ + L+ +K +R+ Sbjct: 63 ILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQAKYSYLIVEKGFAKRLQ 114 Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESL 222 + L +L M+ + P F P P V S +I H I + Sbjct: 115 NLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKY 169 Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN-LSIEDFCRITNILT 277 + K + + + L +N QA N+ N LS E F I N Sbjct: 170 RSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYK 218 >gi|159161818|gb|ABW95901.1| ErmB [uncultured bacterium] Length = 213 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKGTDTVYEIGTGKGHLTAKLAKI-SKQVTSIESDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K +++ ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|159161807|gb|ABW95896.1| ErmB [uncultured bacterium] Length = 213 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASVIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|159161728|gb|ABW95858.1| ErmB [uncultured bacterium] Length = 213 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKEVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA +LS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|159161774|gb|ABW95880.1| ErmB [uncultured bacterium] Length = 213 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P P V S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPIVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|109019771|ref|XP_001088795.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Macaca mulatta] gi|90085601|dbj|BAE91541.1| unnamed protein product [Macaca fascicularis] Length = 396 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 107/301 (35%), Gaps = 55/301 (18%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 L +I + ++E GPG LT+ LL GA V+ +E D+ F P L+ + Sbjct: 83 TLAQIVCGKPNRPPHLLLECNPGPGILTEALLEAGA-TVVALESDKTFIPHLESLGKNLD 141 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG------------------------ 130 +L +I D ++D I P L N+G Sbjct: 142 GKLRVIHCDFFRIDPRSGGAIKPPAMSSEGLFKNLGVEEVPWTAGVPLKVFGMFPSRGEK 201 Query: 131 ---TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 +L ++ S + F E + +KE + + +N Y LSV+ + Sbjct: 202 RALWKLAYDLYSCSSIYKFGRIEINMFIGEKEFQKLMADPRNRGLYYVLSVVWQVACEIK 261 Query: 186 MM-------FDI----SPHVFFPSPKVTS------TVIHFIPHLNPI-----PCCLESLK 223 ++ FD+ +V +I P N P Sbjct: 262 VLHMEPWSSFDVYTRSGRLENTKRKEVLELLQQNLYLIQMTPRRNLFANSLTPMNYNIFF 321 Query: 224 KITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + + FGKR T+ +SL L ++L Q G + + + N+ EDF R+ + ++ Sbjct: 322 HLLKHCFGKRSATVIDHLRSLTPLDAADILMQIGKKEDEKVVNMYPEDFKRLFETIESSE 381 Query: 281 D 281 D Sbjct: 382 D 382 >gi|282877321|ref|ZP_06286149.1| ribosomal RNA adenine dimethylase family protein [Prevotella buccalis ATCC 35310] gi|288926425|ref|ZP_06420346.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17] gi|281300560|gb|EFA92901.1| ribosomal RNA adenine dimethylase family protein [Prevotella buccalis ATCC 35310] gi|288336798|gb|EFC75163.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17] Length = 266 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 12/192 (6%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P +Y GQ+F +D ++ + + + TVI+IGAG G LT L+ +I IE D+ Sbjct: 7 PVRYTGQHFTIDKVLIDDAIKIAKINESDTVIDIGAGKGFLTVHLV-RQCTNIIAIENDK 65 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 ILK+ S + N ++II D K ++++N+P+ I + +L + + Sbjct: 66 SLLSILKNKFSNNTN-VKIIDCDFRCYTIPK-----RNFKVVSNIPFRITSEILKSLM-- 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + +L+ Q E +++ ++K Y V +M++IS F P PK Sbjct: 118 FDSVEHFMGGSLIMQLEPAQKLFSKKVFNPYI---VFYHTFFDLKLMYEISHESFLPPPK 174 Query: 201 VTSTVIHFIPHL 212 V S ++ Sbjct: 175 VKSALLKIERKK 186 >gi|257056840|ref|YP_003134672.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora viridis DSM 43017] gi|256586712|gb|ACU97845.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora viridis DSM 43017] Length = 269 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 28/259 (10%) Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 +FL+ ++L + + V+++GAGPG +T L AR V+ +E+D +F L Sbjct: 20 HFLVSKDVLDTLVRTCTPGPDDLVLDLGAGPGVVTAALARTHAR-VLAVERDPEFVRTLN 78 Query: 88 DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 +H +R+ +IQ D V ++AN PY++ T LL P Sbjct: 79 SRF-RHNDRVRVIQADIRTV-----ALPRRDFLVVANPPYSLSTPLLRR--LLGGRRPNL 130 Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207 S L + +R+T R R ++ + F P P V S V+ Sbjct: 131 RSAALTVEWGFAKRVTTPV---PASRELAWWASRFDIRLVRKVPADHFRPQPTVDSAVLA 187 Query: 208 FIPHLNPIPCCL---ESLKKITQ------EAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 + E L + + A +R + LL + IE Sbjct: 188 IRRRPLSRTTEILLGEILDAVERSPYRSAHALVRR-------IGLGDARRLLKRCDIEPG 240 Query: 259 LRAENLSIEDFCRITNILT 277 RA ++ ++ R+ ++ Sbjct: 241 RRAATITPREWRRVAETVS 259 >gi|307103105|gb|EFN51369.1| hypothetical protein CHLNCDRAFT_141143 [Chlorella variabilis] Length = 388 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 11/166 (6%) Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRL 174 + ++ANLPY I L + +L + Q EVG R+T + + + + Sbjct: 193 DPRVLVVANLPYYITKDCLAQML---PLGGRVAALYFMLQHEVGVRLTQEDPGASDWRAM 249 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFG 231 +++T + ++A +F+I + PSPKV V+ F P K+ ++AF Sbjct: 250 NLVTQYYSQAQYLFEIDRRKYHPSPKVNGAVVRFALTPPSQRLAVPSEPDFLKLIKKAFS 309 Query: 232 KRRKTLRQSLKRLGGENLL----HQAGIETNLRAENLSIEDFCRIT 273 +RRK +R +L+ L + AG+ + RA++L++ F + Sbjct: 310 QRRKVVRNALRPLYEPGQVAAALAAAGLSEDARAQDLTLLQFGELA 355 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI 49 K+ + L + PKK +GQNF+LD ++L I ++G G Sbjct: 33 KAADTRKRLQEQNLRPKKSLGQNFMLDDDVLAAIVAAAGVQPGD 76 >gi|227327729|ref|ZP_03831753.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 116 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H +K GQNFL D ++ I + G ++EIG G G LT Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121 + R VIE D+ L + ++L IIQ DA+ +DF P+R+ Sbjct: 53 APVGDRMDR-FTVIELDRDLAARL-ETHPTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110 Query: 122 I 122 Sbjct: 111 F 111 >gi|159161786|gb|ABW95886.1| ErmB [uncultured bacterium] Length = 213 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAGCFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L + R ++L +N HQA +LS Sbjct: 166 TDVPDKYWKLYTYFVSTWVNR------EYRQLFTKNQFHQAMKHAK--VNDLS 210 >gi|72528309|gb|AAZ73008.1| ribosomal methylase Erm34 [Bacillus clausii] Length = 240 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 18/231 (7%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +LK+I + + TV+E+GAG G LT +L A +V+ +E DQ+ L+ Sbjct: 1 KRLLKEIVDKADVSVRDTVLELGAGKGALTTILSER-ADRVLAVEYDQKCIEALQWKLVG 59 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 N + ++ D +KV + P +++N+PY I T ++ ++ + + Sbjct: 60 SKN-VSVLHQDIMKV-----ALPTEPFVVVSNIPYAITTAIMKMLLNNPK--NKLQRGAI 111 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + +K +R T+ Y + IS F P PKV S ++ + Sbjct: 112 VMEKGAAKRFTSVSPKDAYV---MAWHMWFDIHYERGISRSSFSPPPKVDSALVRIVRKQ 168 Query: 213 NPIPCCLES--LKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIET 257 +P+ E+ + A R + LR + + G++ Sbjct: 169 HPLFPYKEAKTMHDFLSYALNNPRAPLDQVLRGIFTAPQAKKVRQAIGVKP 219 >gi|83702392|gb|ABC41552.1| erythromycin ribosome methylase [Gemella morbillorum] Length = 213 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + T EIG G G+LT L + +++V IE D F + D + Sbjct: 1 EKVLNQIIKQLNLKETDTFYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSDKL-K 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV+S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVSSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|224417853|ref|ZP_03655859.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491] gi|253827192|ref|ZP_04870077.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491] gi|253510598|gb|EES89257.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491] Length = 128 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 4/128 (3%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEV + A +N + LSVL +A M+F++ P F P PKVTS V + Sbjct: 1 MTQKEVALKFCAIQNQSDFSALSVLAQSVGEAKMLFEVPPSAFVPQPKVTSAVFLIEKNH 60 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIED 268 P L L+++ + AF RKTL +L ++ + L GI +N R + D Sbjct: 61 IPSSDFLVKLEELLKIAFSAPRKTLFNNLSKVYSKEKIMETLETLGIVSNKRPHEIDTTD 120 Query: 269 FCRITNIL 276 + R+ +L Sbjct: 121 YHRLLKLL 128 >gi|330938462|gb|EGH42069.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 90 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 Y+ +K GQNFL D ++ KI + + ++EIG G G LT+ LL GA ++ Sbjct: 3 EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 V+E D+ PIL + PN + Q DA Sbjct: 62 VVELDKDLIPILNGQFASKPN-FNLHQGDA 90 >gi|84663565|gb|ABC60096.1| erythromycin ribosome methylase [Gemella haemolysans] Length = 213 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ N+PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F PKV S +I H Sbjct: 115 GFSKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHLKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|256965588|ref|ZP_05569759.1| N-methyltransferase [Enterococcus faecalis HIP11704] gi|256956084|gb|EEU72716.1| N-methyltransferase [Enterococcus faecalis HIP11704] Length = 171 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 15/181 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170 Query: 204 T 204 Sbjct: 171 A 171 >gi|221091001|ref|XP_002169774.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 175 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 + ++ Y + KK + QNF+LDLN+ KIA + VIE+G+GPG+L++ L Sbjct: 12 PMPRISDLMRLYGLRAKKQLSQNFILDLNVTDKIARKADVF-DCNVIEVGSGPGSLSRSL 70 Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 L G R + +E D++F P L+ + + I D LK D K Sbjct: 71 LNAGLRHLYAVEIDKRFLPSLELLQDASDGHMSIYHADILKFDMVK 116 >gi|159161741|gb|ABW95864.1| ErmB [uncultured bacterium] Length = 213 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +L +I + + TV EIG G+LT L + +++V IE D F L + Sbjct: 1 EKVLNQIIKQLNLKETDTVYEIGTSKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 R+ +I D L+ F +I+ ++PY++ T+++ + + + Sbjct: 59 LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 F K + + L +L + + + F P PKV S +I H Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165 Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265 +P L F K + + ++L +N HQA NLS Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210 >gi|261886276|ref|ZP_06010315.1| dimethyladenosine transferase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 168 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 9/158 (5%) Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 ++ANLPY + T ++ I + L ++ Q+EV + +++ + L++LT Sbjct: 1 MVANLPYYVATNMILKAIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWL 56 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239 + K ++FD+ F P PKV S+VI I + + ++ K + AF RKTL + Sbjct: 57 KGKCELLFDVPSSAFNPPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLK 116 Query: 240 SLKRLGGENLLH----QAGIETNLRAENLSIEDFCRIT 273 +L L + L + +R LS+ + ++ Sbjct: 117 NLSNLVQRDRLEIFFNTENLSHTIRPRKLSVALYLKLF 154 >gi|284033869|ref|YP_003383800.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM 17836] gi|283813162|gb|ADB35001.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM 17836] Length = 182 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 21/192 (10%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + G + L D +++ +++G G V+++GAG G LT L+ GA V+ +E Sbjct: 7 ARGAWGWHPL-DSRWAQRVVDAAGVRPGDLVLDVGAGLGALTAPLVRAGAD-VVAVELHP 64 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ + P + +++ DA + P R++++ PY I T LL +S Sbjct: 65 HRADRLRRRFADAP--VRVVRADA-----ADLRLPTRPFRVVSSPPYGISTELLKRLLSP 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQ--KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + S L+ Q++V R + R ++ + F P Sbjct: 118 RS---RLVSADLVLQRQVVNRWVDGRAPGRARWSR-------YYDTSIGIRLPRKAFTPP 167 Query: 199 PKVTSTVIHFIP 210 P V S V+ Sbjct: 168 PHVDSAVLRIQR 179 >gi|300912862|ref|ZP_07130301.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|300885836|gb|EFK81042.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 182 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 15/187 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 ++ H N +++ D L+ F K + +I N+PYNI T ++ + + Sbjct: 68 TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + L+ + +R+ K S L++L +++ + F P PKV S++ Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173 Query: 206 IHFIPHL 212 I Sbjct: 174 IRLNRKK 180 >gi|70606438|ref|YP_255308.1| dimethyladenosine transferase [Sulfolobus acidocaldarius DSM 639] gi|68567086|gb|AAY80015.1| ribosomal RNA adenine dimethylase [Sulfolobus acidocaldarius DSM 639] Length = 222 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 34/222 (15%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 K +GQ+FL D++I+KK+ VIEIG+G G +T+ L + I IE D Sbjct: 1 MKNKLGQHFLNDISIIKKLISLVD-HSTRPVIEIGSGNGVITKFL-----KPDIAIEIDV 54 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 L+ ++I D + ++ +++++LPY I T I Sbjct: 55 SLINHLR--------NYQLIIGD-------GRYLPTTRGQVVSSLPYYITTDFFHEAIKL 99 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 D L L+ QK+ ++IT++ S Y L + K ++ + P F P+PK Sbjct: 100 DN----IRKLVLIVQKDFIDKITSKSTSISY-----LLNYYYKISLFDIVPPSAFSPNPK 150 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 V S ++ F E ++ I++ R K+L+ +L Sbjct: 151 VFSQLVVFDRTRKYNKNISEIIECISK----YRNKSLKNALS 188 >gi|149409344|ref|XP_001510710.1| PREDICTED: similar to mitochondrial transcription factor b1, partial [Ornithorhynchus anatinus] Length = 156 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 9/130 (6%) Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCL 219 R+TA S RLS++ + F I F P P+V VIHF P + P I Sbjct: 1 RLTASTGSRQRSRLSIMAQYLCNVQNCFTIPGRAFLPKPEVDVGVIHFTPLVEPQISQPF 60 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCR 271 + ++K+ Q F RRK + + L + +L A ++ LR LSI F Sbjct: 61 KLVEKVVQNVFQFRRKYCYKGVGNLFPNTQRLERTKEMLMVADVDPTLRPGQLSILQFKS 120 Query: 272 ITNILTDNQD 281 + + D Sbjct: 121 LCDAYRKMCD 130 >gi|159232386|emb|CAM96571.1| 23S rRNA methyltransferase [Streptomyces ambofaciens] Length = 282 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 53/282 (18%) Query: 21 PKKYMGQNFLLDLNILKKIAE-SSGSLDGITV----------IEIGAGPGNLTQMLLTLG 69 ++ GQNF S+ T+ +EIGAG G +T++L + G Sbjct: 22 ARREWGQNFF---RTAAAACRFSAQLDGSDTIPPDSPNDLMTVEIGAGSGRVTKVLASPG 78 Query: 70 ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 ++ +E D ++ + ++++ + ++ +D L P+R+I NLP+ Sbjct: 79 -TPLLAVEIDPRWA---RRLAAESLPDVTVVNEDFLT-----LQLPGQPVRLIGNLPFVT 129 Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMM 187 GTR+L + D P L Q+E K + +G W Sbjct: 130 GTRMLRRCL--DMGPARMRQGVFLLQREYV-----GKRTGAWGGNLFNAQWEPWYSFDRG 182 Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR-------------R 234 S F P P+ + + PH P E K + F +R R Sbjct: 183 LAFSRQDFTPVPRADTQTLMVAPHRRPSVPWRE---KAAYQRFVQRVFDTGQMTVGDAAR 239 Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276 K LR+ G + AG+ R ++L++ ++ + Sbjct: 240 KVLRR-----GHAQFVRGAGVRPADRVKDLTVPEWTALFRAY 276 >gi|93213580|gb|ABF02183.1| erythromycin-resistance protein [Streptococcus pyogenes] Length = 198 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKENDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|329314329|gb|AEB88742.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus T0131] Length = 191 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 15/189 (7%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + VIEIG+G G+ T+ L+ + +R V IE D + Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K+ + N +++IQ D LK F K N +I N+PYNI T ++ T+ Sbjct: 69 KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ +K +R+ + L +L M+ + P F P P V S +I Sbjct: 120 AKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174 Query: 207 HFIPHLNPI 215 H I Sbjct: 175 VLERHQPLI 183 >gi|256964193|ref|ZP_05568364.1| rRNA methylase [Enterococcus faecalis HIP11704] gi|256954689|gb|EEU71321.1| rRNA methylase [Enterococcus faecalis HIP11704] Length = 171 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F +I+ N+PY++ T+++ + Sbjct: 65 N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 + + F K + + L +L + + + F P PKV S Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170 >gi|90762292|gb|ABD97884.1| erythromycin resistant protein [Streptococcus pyogenes] Length = 198 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|89243240|gb|ABD64776.1| erythromycin resistance protein [Streptococcus pyogenes] gi|126693559|gb|ABO26569.1| ErmB [Streptococcus uberis] Length = 198 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|71028132|ref|XP_763709.1| hypothetical protein [Theileria parva strain Muguga] gi|68350663|gb|EAN31426.1| hypothetical protein TP04_0074 [Theileria parva] Length = 285 Score = 107 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 37/200 (18%) Query: 107 VDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 +D+++ N + + II NLPY I +++L + + + + + Q EV ER+ A Sbjct: 1 MDYKELSNRVGRKLWIIGNLPYYITSQILMCLLD---YRKYIDRAVITAQLEVAERLVAP 57 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---- 221 S HY LSVL T+ ++F +S HVF+P PKV S I ++ Sbjct: 58 VGSKHYSMLSVLIQMFTRPKILFKLSNHVFYPKPKVQSACIKLEFTNTNTVNVRDTGDNT 117 Query: 222 ---------------LKKITQEAFGKRRKTLRQS-------LKRLGGENLLHQAGIETNL 259 L++I + +F K+RK LR S EN+L L Sbjct: 118 TVGDDPGIRVSNMMLLREILRVSFNKKRKKLRSSLGSLLSKYNVKLPENVLE-------L 170 Query: 260 RAENLSIEDFCRITNILTDN 279 R +NL+ E+F +TN + + Sbjct: 171 RPQNLTPENFITLTNHIHKH 190 >gi|82698219|gb|ABB89115.1| erythromycin resistance protein [Streptococcus pyogenes] gi|91983298|gb|ABE68714.1| erythromycin resistance protein [Streptococcus pyogenes] gi|126583349|gb|ABO21677.1| ErmB [Streptococcus uberis] Length = 198 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKENDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|2245604|gb|AAB62551.1| adenine N-6-methyltransferase [Enterococcus faecalis] Length = 219 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 + TV EIG G G+LT L + +++V IE D F L + R+ +I D Sbjct: 1 LKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDI 58 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 L+ F +I+ N+PY++ T+++ + + + F K + Sbjct: 59 LQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI--- 111 Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224 + L +L + + + F P PKV +I H +P L Sbjct: 112 ------HRTLGLLLHTQVSIQQLLKLPXECFHPKPKVNGVLIKLTRHTTDVPDKYWKL-- 163 Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274 F K + + ++L +N HQA NLS E I N Sbjct: 164 --YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVLSIFN 210 >gi|126693572|gb|ABO26571.1| ErmB [Streptococcus agalactiae] Length = 198 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|124365209|gb|ABN09636.1| ErmB [Streptococcus pyogenes] Length = 198 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKETDTVFEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|114452120|gb|ABI75034.1| erythromycin resistance protein [uncultured bacterium] Length = 214 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 25/225 (11%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + KI + + + EIG+G G+ T L+ V IE D + ++ H N Sbjct: 5 IDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVNHDN 63 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 +++ D L+ F K + +I ++PYNI T ++ + + + L+ + Sbjct: 64 -FQVLNKDILQFKFPK----NQSYKIFGSIPYNISTDIIRKVV----FESIADESYLIVE 114 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 +R+ K S L++L +++ + F P PKV S++I + I Sbjct: 115 YGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRI 169 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIE 256 + F K + + K++ +N L AGI+ Sbjct: 170 SYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGID 208 >gi|81174759|gb|ABB58921.1| ErmA [Streptococcus pyogenes] gi|81174761|gb|ABB58922.1| ErmB [Streptococcus pyogenes] gi|82698215|gb|ABB89113.1| erythromycin resistance protein [Streptococcus pyogenes] gi|82698217|gb|ABB89114.1| erythromycin resistance protein [Streptococcus pyogenes] gi|124365205|gb|ABN09634.1| ErmB [Streptococcus pneumoniae] gi|124365211|gb|ABN09637.1| ErmB [Streptococcus pneumoniae] gi|126693546|gb|ABO26567.1| ErmB [Streptococcus agalactiae] Length = 198 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|126693566|gb|ABO26570.1| ErmB [Streptococcus uberis] Length = 191 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|307091914|gb|ADN28292.1| putative rRNA methyltransferase [uncultured bacterium] Length = 119 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D + L I ++ G +V+E+G G G +TQ LL GA KV +E D+ P+L+ Sbjct: 1 VDEDALDAILGAAEIQPGESVVEVGPGAGVVTQRLLAAGA-KVTAVELDEALAPLLEKRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +PN ++Q D L E +P +++ANLPY I L ++ P + Sbjct: 60 GGNPN-FHLVQGDILHTPREDLLGADAPAKLVANLPYYITAPTLRYFLEHPPRPRRLVVM 118 Query: 151 T 151 Sbjct: 119 V 119 >gi|126583369|gb|ABO21678.1| ErmB [Streptococcus uberis] Length = 191 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLKKTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|90994360|gb|ABE03746.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes] Length = 198 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 + + TV EIG G G+LT L + +++V IE D F L + R+ + Sbjct: 1 IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTL 58 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 + + L +L + + + F P PKV S +I H +P Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165 Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 L F K + + ++L +N HQA Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198 >gi|307092022|gb|ADN28346.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092026|gb|ADN28348.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092028|gb|ADN28349.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092044|gb|ADN28357.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I +++G V+EIG G G LT++LL G R+V+ IEKD + L++ Sbjct: 1 HDQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 ++LE++ DAL+ + + + ++++NLPY++ + +L P Sbjct: 60 QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113 >gi|307092054|gb|ADN28362.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I +++G V+EIG G G LT++LL G R+V+ IEKD + L++ Sbjct: 1 HDQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLAEFLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 ++LE++ DAL+ + + + ++++NLPY++ + +L P Sbjct: 60 QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113 >gi|157695030|gb|ABV66104.1| dimethyladenosine transferase [Rickettsiella melolonthae] Length = 119 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 ++ KI ++ +IEIG G G LT+ LL + + VIE D+ P L+ + Sbjct: 5 VIDKILQAIAPHKTDHMIEIGPGLGALTERLLPHL-KSLTVIELDKDLIPFLQKKCAAL- 62 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 L + Q D LK+DF R++ NLPYNI T LLF+ + + + + Sbjct: 63 GELIVYQGDVLKIDFHTLSKTEQVWRLVGNLPYNISTPLLFHCLEQAN---IIQDMHFML 119 >gi|84000229|ref|NP_001033216.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus] gi|122138757|sp|Q32LD4|TFB2M_BOVIN RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|81673681|gb|AAI09635.1| Transcription factor B2, mitochondrial [Bos taurus] gi|296479265|gb|DAA21380.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus] Length = 394 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 111/307 (36%), Gaps = 56/307 (18%) Query: 29 FLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 ++ + + + G ++E GPG LT+ LL GAR VI +E D+ F P L Sbjct: 74 YVTSPRVAETVVRVLRGKRKAGQLILECNPGPGVLTRALLESGAR-VIALESDKNFIPEL 132 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG---------------- 130 K + + RLE+I D K+D ++ P+ L +G Sbjct: 133 KSLGNSVNGRLEVIYCDFFKLDPRNHGMVTPPVMTSDMLFQYLGVKAHPWKKGFPLKVVG 192 Query: 131 -----------TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177 ++L + S + + L L ++ ++TA +P Y LSVL Sbjct: 193 ILPAKTERNTLWKILHDLYSCSSVYKYGRAELNLFISEKECRKLTANPQTPALYQSLSVL 252 Query: 178 TGWRTKATMMFDISPHVFFPSPKVTS---------------TVIHFIPHLNPI-----PC 217 ++ P F + + + PH N P Sbjct: 253 GQTACGIKVLCT-EPSSLFDTYAIKGELEKQRHRESLEQNLCFVQLTPHRNLFTGTLTPF 311 Query: 218 CLESLKKITQEAFGKRRKTLRQ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 + + ++ F KR L SL + ++L Q + ++R ++ +DF R+ Sbjct: 312 NYDVFFHMLRQCFMKRNAKLIDHLPSLSPIDAVHILKQIKKKKDVRVVDMYPKDFLRLFE 371 Query: 275 ILTDNQD 281 + ++D Sbjct: 372 TIECSKD 378 >gi|119571769|gb|EAW51384.1| dimethyladenosine transferase, isoform CRA_a [Homo sapiens] Length = 152 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 9/133 (6%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85 Query: 78 KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 D + L P ++L+++ D LK D FF+ +ANLPY + + Sbjct: 86 LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQVCYTYVS 139 Query: 136 NWISADTWPPFWE 148 I T W Sbjct: 140 KRICPPTGCKTWR 152 >gi|126693577|gb|ABO26572.1| ErmB [Streptococcus agalactiae] Length = 191 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|93213584|gb|ABF02185.1| erythromycin-resistance protein [Streptococcus pyogenes] Length = 191 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|90103246|gb|ABD85468.1| erythromycin resistance methylase [Streptococcus pneumoniae] Length = 191 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNFKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|90660160|gb|ABD97341.1| erythromycin resistance protein [Streptococcus pneumoniae] Length = 191 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|67974731|gb|AAY84558.1| erythromycin resistance methylase [Helcococcus kunzii] Length = 176 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 15/187 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 4 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 62 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K + +I N+PYNI T ++ + Sbjct: 63 KKAVEPFQN-IKVIHEDILKFSFPKNTD----YKIFGNIPYNISTDIVKKI----AFDSQ 113 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ ++ +R+ + L +L ++ + F P P V S +I Sbjct: 114 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 168 Query: 207 HFIPHLN 213 H Sbjct: 169 VLERHKP 175 >gi|124365213|gb|ABN09638.1| ErmB [Streptococcus pyogenes] Length = 191 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|93213586|gb|ABF02186.1| erythromycin-resistance protein [Streptococcus pyogenes] gi|126693553|gb|ABO26568.1| ErmB [Streptococcus agalactiae] Length = 191 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLDLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|325120060|emb|CBZ55612.1| putative dimethyladenosine synthase [Neospora caninum Liverpool] Length = 195 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 12/135 (8%) Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-- 213 + +R+TA+ Y RLSV+ ++ + VF+P PKV + ++H Sbjct: 19 RPFLQRLTARPGERQYSRLSVVFALYGSCRIVKKLPSSVFYPVPKVDAALVHIAFRQASL 78 Query: 214 ---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---TNLRAENLSIE 267 + + AFG+RRK LR SLK + H A + +LR + LS E Sbjct: 79 REILRGADPHQFRTVLHAAFGQRRKMLRSSLKPILP----HPAALPEHFASLRPQQLSPE 134 Query: 268 DFCRITNILTDNQDI 282 DF +TN + + D Sbjct: 135 DFLDLTNAIFSSPDA 149 >gi|93213582|gb|ABF02184.1| erythromycin-resistance protein [Streptococcus pyogenes] Length = 191 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQFDLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|307092010|gb|ADN28340.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I +++G V+EIG G G LT++LL A +V+ IEKD + L+ Sbjct: 1 HDQNQLRRIVDAAGLSANDKVLEIGPGLGPLTEILLE-KANEVLAIEKDTRLVEFLRGHF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 +L++ DAL + + S ++++NLPY++ + +L P Sbjct: 60 QN--PKLQLHHADALDFLKSEGHDWSD-WKVVSNLPYSVASPILVELACGARAPEKI 113 >gi|307092024|gb|ADN28347.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092058|gb|ADN28364.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ V+EIG G G LT++LL A +V+ IE D + L++ Sbjct: 1 HDQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 S RLE++ DALK+ + + S +++ANLPY++ + +L + P Sbjct: 60 SN--PRLELLHADALKILRHEPRDWSD-WKLVANLPYSVASPILVELAQSPQRP 110 >gi|332236391|ref|XP_003267387.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Nomascus leucogenys] Length = 396 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 117/327 (35%), Gaps = 63/327 (19%) Query: 14 LSHYKIIPKKYMGQNFLLDLN---ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 S K+ K+Y + D L +I + ++E GPG LTQ LL GA Sbjct: 64 ASKSKLDFKRY-----VTDRRLAETLAQIVWGKPNRPPHLLLECNPGPGILTQALLEAGA 118 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 KV+ +E D+ F P L+ + +L +I D K+D I P L N+G Sbjct: 119 -KVVALESDKTFIPHLESLGRNLDGKLRVIHCDFFKIDPRSGGLIKPPAMSSRGLFKNLG 177 Query: 131 ---------------------------TRLLFNWISADTWPPF--WESLTLLFQKEVGER 161 +L ++ S + F E + +KE + Sbjct: 178 IEAVPWTADIPLKVIGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKL 237 Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMM-------FDI---SPHVFFPSPKVTST------- 204 + +N Y LSV+ + ++ FD+ + P + Sbjct: 238 MADPRNPDLYHVLSVIWQVACEIKVLHMEPWSSFDVYTRKGRLENPKRRELLDLLQQKLY 297 Query: 205 VIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIE 256 +I P N P + + FG+R T+ +SL L ++L Q G + Sbjct: 298 LIQMTPRQNLFAKSLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKK 357 Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283 + + N+ +DF + + ++D A Sbjct: 358 EDEKVVNMYPQDFKTLFETIECSKDCA 384 >gi|11641289|ref|NP_071761.1| dimethyladenosine transferase 2, mitochondrial [Homo sapiens] gi|74752681|sp|Q9H5Q4|TFB2M_HUMAN RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Hepatitis C virus NS5A-transactivated protein 5; Short=HCV NS5A-transactivated protein 5; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=h-mtTFB; Short=h-mtTFB2; Short=hTFB2M; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|10439783|dbj|BAB15566.1| unnamed protein product [Homo sapiens] gi|13097249|gb|AAH03383.1| Transcription factor B2, mitochondrial [Homo sapiens] gi|33328300|gb|AAQ09600.1| NS5ATP5 [Homo sapiens] gi|55959218|emb|CAI16399.1| transcription factor B2, mitochondrial [Homo sapiens] gi|119597558|gb|EAW77152.1| transcription factor B2, mitochondrial, isoform CRA_d [Homo sapiens] gi|167773225|gb|ABZ92047.1| transcription factor B2, mitochondrial [synthetic construct] gi|261858246|dbj|BAI45645.1| transcription factor B2, mitochondrial [synthetic construct] Length = 396 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 103/292 (35%), Gaps = 55/292 (18%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 ++E GPG LTQ LL GA KV+ +E D+ F P L+ + +L +I D Sbjct: 94 RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFF 152 Query: 106 KVDFEKFFNISSPIRIIANLPYNIG---------------------------TRLLFNWI 138 K+D I P L N+G +L ++ Sbjct: 153 KLDPRSGGVIKPPAMSSRGLFKNLGIEAVPWTADIPLKVVGMFPSRGEKRALWKLAYDLY 212 Query: 139 SADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FD 189 S + F E + +KE + + N Y LSV+ + ++ FD Sbjct: 213 SCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSFD 272 Query: 190 I-----SPHVFFPSPKVTS-----TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRR 234 I + +I IP N P + + FG+R Sbjct: 273 IYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRS 332 Query: 235 KTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 T+ +SL L ++L Q G + + + N+ +DF + + ++D A Sbjct: 333 ATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDCA 384 >gi|307069663|ref|YP_003878140.1| putative dimethyladenosine transferase [Candidatus Zinderia insecticola CARI] gi|306482923|gb|ADM89794.1| putative dimethyladenosine transferase [Candidatus Zinderia insecticola CARI] Length = 254 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 10/164 (6%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 ++EIG G GNLT+ L+ + IE D++ + K++ ++ N++ + + LK + Sbjct: 32 DFILEIGFGNGNLTKYLIKYKI-FLFAIEIDKKLY---KNLKIKYKNKINLFNYNILKFN 87 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 + F + RII NLPYNI +++ +I + + + ++ QKE ++I A + Sbjct: 88 IKIF---NKKFRIIGNLPYNISKKIILYFIK---FYKNIKDIYVMLQKEFVKKINANYGN 141 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + ++S+LT + ++ +IS F+P PKV S I IP Sbjct: 142 KKFSKISILTQIKFNIIILLNISKKNFYPIPKVNSYFIKMIPKK 185 >gi|124365207|gb|ABN09635.1| ErmB [Streptococcus pyogenes] Length = 191 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + V EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNLRRTDAVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|55590166|ref|XP_514318.1| PREDICTED: transcription factor B2, mitochondrial isoform 2 [Pan troglodytes] gi|114573580|ref|XP_001139400.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial isoform 1 [Pan troglodytes] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 102/292 (34%), Gaps = 55/292 (18%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 ++E GPG LTQ LL GA KV+ +E D+ F P L+ + +L +I D Sbjct: 91 RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFF 149 Query: 106 KVDFEKFFNISSPIRIIANLPYNIG---------------------------TRLLFNWI 138 K+D I P L N+G +L ++ Sbjct: 150 KLDPRSGGVIKPPAMSSRGLFKNLGIEAVPWTADIPLKVIGMFPSRGEKRALWKLAYDLY 209 Query: 139 SADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FD 189 S + F E + +KE + + N Y LSV+ + ++ FD Sbjct: 210 SCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSFD 269 Query: 190 I-----SPHVFFPSPKVTS-----TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRR 234 I + +I P N P + + FG+R Sbjct: 270 IYTRKGPLENPKRRELLDQLQQKLYLIQMTPRQNLFTKNLTPMNYNIFFHLLKHCFGRRS 329 Query: 235 KTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 T+ +SL L ++L Q G + + + N+ +DF + + ++D A Sbjct: 330 ATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDCA 381 >gi|155965924|gb|ABU40944.1| erythromycin resistance methylase [Streptococcus suis] Length = 193 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 23/215 (10%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 +K+I + VIEIG+G G+ T+ L+ + +R V IE D+ + K+ + N Sbjct: 1 VKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDEGLCQVTKEAVNPSEN 59 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 +++IQ D LK F K N +I N+PYNI T ++ T+ + L+ + Sbjct: 60 -IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQAKYSYLIVE 110 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 K +R+ + L +L M+ + P F P P V S +I H I Sbjct: 111 KGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLI 165 Query: 216 -PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 + + K + + + L +N Sbjct: 166 SKKDYKKYRSFVY-------KWVNREYRVLFTKNQ 193 >gi|307092040|gb|ADN28355.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D L++I +++G V+EIG G G LT++LL G R+V+ IEKD + L++ Sbjct: 1 HDQTQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 ++LE++ DAL+ + + + ++++NLPY++ + +L P Sbjct: 60 QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113 >gi|34147928|gb|AAQ62542.1| erythromycin resistance methylase [Streptococcus sp. 'group G'] Length = 184 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 15/187 (8%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 K N +++I +D LK F K + +I ++PYNI T ++ + Sbjct: 69 KKAVEPFQN-IKVIHEDILKFSFPKNTD----YKIFGSIPYNISTDIVKKI----AFDSQ 119 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 + L+ ++ +R+ + L +L ++ + F P P V S +I Sbjct: 120 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174 Query: 207 HFIPHLN 213 H Sbjct: 175 VLERHKP 181 >gi|149748941|ref|XP_001490604.1| PREDICTED: similar to transcription factor B2, mitochondrial [Equus caballus] Length = 398 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 118/326 (36%), Gaps = 63/326 (19%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT---VIEIGAGPGNLTQMLLTLGA 70 ++ ++ P++Y + + + + + T +E GPG LTQ LL GA Sbjct: 64 VTKCRLEPRRY-----ITSPRLAETLVQVLRGGREKTCQLFLECNPGPGILTQALLENGA 118 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 R VI +E D+ F P L+ + +LE++ D K+D + PI + L N+G Sbjct: 119 R-VIALESDRTFIPHLESLGKNLNGKLEVVHCDFFKLDPTNCGTVKPPIMVSKMLFQNLG 177 Query: 131 ---------------------------TRLLFNWISADTWPPFWESLTLLF--QKEVGER 161 +LL + S + + +F +K+ + Sbjct: 178 IQALPWSKGIPLKVIGIFPIKNERKTLWKLLHDLYSCTSIYRYGRVELNMFISEKQYQKL 237 Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMM-------FDI---SPHVFFPS--PKVTS-----T 204 + KN Y LSVL + ++ FDI + + P + Sbjct: 238 MANPKNPNLYQALSVLWQVACEIKLLHMEPWSSFDIYTQNGQLEKPKRRESLEELQQNLC 297 Query: 205 VIHFIPHL-----NPIPCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIE 256 +I P N P + + ++ F KR L SL + ++L + + Sbjct: 298 LIQLTPRRTLFTENLTPINYDVFFHMLKQCFMKRNAKLIDHLHSLSPVDAMDILKKIKKK 357 Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282 + NL DF ++ + ++D Sbjct: 358 EKTKITNLYPRDFKQLFETIECSKDY 383 >gi|218473458|emb|CAV31168.1| hypothetical protein [Streptococcus pneumoniae] Length = 211 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 26/225 (11%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG G G+LT L + +++V IE D F L + R+ +I D L+ Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ---- 54 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F +I+ N+PY++ T+++ + + + F K + + Sbjct: 55 FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HR 105 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232 L +L + + + F P PKV S +I H +P L F Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160 Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274 K + + ++L +N HQA NLS E I N Sbjct: 161 -SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLSIFN 202 >gi|307092048|gb|ADN28359.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I +++G V+EIG G G LT++L G R+V+ IEKD + L++ Sbjct: 1 HDQNQLRRIVDAAGLPQTDKVLEIGPGLGPLTELLPENG-REVLAIEKDARLVEFLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 ++LE++ DAL+ + + + ++++NLPY++ + +L P Sbjct: 60 QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113 >gi|330835850|ref|YP_004410578.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4] gi|329567989|gb|AEB96094.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4] Length = 217 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 35/218 (16%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 QNFL+D ++++KI S +IEIG G GNL+++ + IE DQ+ Sbjct: 3 YSQNFLVDKDVIRKI--SDNISTERPLIEIGCGKGNLSEV-----VSPDLCIEIDQRLLS 55 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 LK+ + IQ DA K+ + +II++LPY+I I + Sbjct: 56 FLKNYNP--------IQGDARKLPVLR-------GQIISSLPYSITYDFFMEIIKIN--- 97 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 L L+ Q++ ++ +S + + + +F I P F P+P++ S Sbjct: 98 -GISRLLLILQEDFVNKVIDYP-----TFISFILNYYFEINKLFVIPPSSFRPAPRIFSA 151 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 ++ + + I++ R K+L K Sbjct: 152 LVSLKRSRQYDQKVTDVIACISK----YRNKSLNNIAK 185 >gi|89242975|gb|ABD64743.1| erythromycin resistance protein [Streptococcus pyogenes] Length = 191 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLNFKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|124365203|gb|ABN09633.1| ErmB [Streptococcus pyogenes] Length = 191 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKHGNFKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|89242973|gb|ABD64742.1| erythromycin resistance protein [Streptococcus pyogenes] gi|89243237|gb|ABD64775.1| erythromycin resistance protein [Streptococcus pyogenes] Length = 191 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKHLILKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|90103248|gb|ABD85469.1| erythromycin resistance methylase [Streptococcus pyogenes] Length = 191 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 21/212 (9%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + + TV EIG G G+LT L + +++V IE D F L + R+ Sbjct: 1 IIKQLILKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +I D L+ F +I+ ++PY++ T+++ + + + F K Sbjct: 59 LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 + + L +L + + + F P PKV S +I H +P Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250 L F K + + ++L +N Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191 >gi|86604368|gb|ABD13962.1| erythromycin resistance protein [Shuttle vector pBK638] gi|112941720|gb|ABI26288.1| ermAM [Promoter reporter vector pBKGT] gi|112941749|gb|ABI26293.1| ErmAM [Promoter rescue vector pBK] Length = 207 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 81/254 (31%), Gaps = 64/254 (25%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L + R+ +I D L+ F Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQF---------------------------------- 89 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 P + TL + L +L + + + F P PKV S Sbjct: 90 -PNKQRCTLDIHRT----------------LGLLLHTQVSIQQLLKLPAECFHPKPKVNS 132 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 +I H +P L F K + + ++L +N HQA N Sbjct: 133 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 184 Query: 264 LSI---EDFCRITN 274 LS E I N Sbjct: 185 LSTVTYEQVLSIFN 198 >gi|325123520|gb|ADY83043.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance [Acinetobacter calcoaceticus PHEA-2] Length = 91 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 F P PKVTS V +P+ ++L ++ F +RRKTLR SLK + E+ Sbjct: 2 PAGAFNPPPKVTSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAED 61 Query: 249 LLHQAGIETNLRAENLSIEDFCRITN 274 +AG++ R E L++ F + + Sbjct: 62 GFEKAGVDPMARPETLTLAQFVALAD 87 >gi|156365624|ref|XP_001626744.1| predicted protein [Nematostella vectensis] gi|156213632|gb|EDO34644.1| predicted protein [Nematostella vectensis] Length = 368 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 118/315 (37%), Gaps = 53/315 (16%) Query: 9 SLKTILSHYKIIPKKYMGQNF--LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66 S T++ Y + P+ Y +N+ + D ++ +++A+ G VIE GPG LT+ ++ Sbjct: 34 SRATLIEKYNLKPRSYTVKNYKYITDRDLAERVAKVLNVQ-GHCVIEASPGPGMLTRAMI 92 Query: 67 TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 GA++VI +E D+ F L+ + S+ + + D K+D + S I P Sbjct: 93 DSGAKQVIGLEPDKIFMEDLRSLQSETNGKFTPLFGDFGKIDPHLVHDESDTKARICRAP 152 Query: 127 YNIGTRLLFNWISADTWPP---------------------------------------FW 147 I ++ LF IS W Sbjct: 153 -AIASKDLFKGISPVEWESDETPVKFVGIEGGKTLASTTKILMSYLARVPGKESIFKIGR 211 Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP----SPKVTS 203 L + + ER+ AQ + +Y RLS++ ++ +F P K Sbjct: 212 CELLFFYTHDRAERLLAQPGTKYYNRLSIMASLFCDVNVIHREPCQMFDPYFRKDGKKEL 271 Query: 204 TVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKTLRQSLKRL--GGENLLHQAGIET 257 +I +P E + + K +++L SL + G +L G+ Sbjct: 272 QLISIVPKKRLDFSIPEDCLHLVGYFIRILMIKPKQSLATSLDGISPGSHVILDNLGLPH 331 Query: 258 NLRAENLSIEDFCRI 272 + RA +L + + R+ Sbjct: 332 DTRASDLVPKMYGRL 346 >gi|307092008|gb|ADN28339.1| putative rRNA methyltransferase [uncultured bacterium] Length = 113 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 8/121 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D I+ +I E+S + G TV+EIG G G LTQ L+ GA KVI +E D P L++ Sbjct: 1 TDEGIVAEIIEASAIVKGETVLEIGPGTGVLTQALVEAGA-KVIAVEADPDLIPALEETF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +R+E+++ D L+ + + +++AN+PYNI + +L ++ D+ P + Sbjct: 60 G---DRIELVESDVLETN----LKLPKLFKLVANIPYNITSDVLHRSLTGDSRPTRLVLM 112 Query: 151 T 151 Sbjct: 113 V 113 >gi|290561427|gb|ADD38114.1| Probable dimethyladenosine transferase [Lepeophtheirus salmonis] Length = 186 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 5/111 (4%) Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224 Y RLS+ T + + + + F P PKV S+V+ P P P + Sbjct: 39 PPGDKLYCRLSINTQLLSTVHHLLKVGKNNFRPPPKVESSVVRIEPKNPPPPINFKEWDG 98 Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFC 270 +T+ F ++ KTL + + L + ++ + E SI++ Sbjct: 99 LTRICFVRKNKTLGAAFSQTPVLLTLDKNYRTHMSLKEEMLPEEFSIKELI 149 >gi|307091920|gb|ADN28295.1| putative rRNA methyltransferase [uncultured bacterium] Length = 122 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 + IL +I E++ TV E+G G G +T LL R VI +E D+ L++ Sbjct: 1 ISNEILDRIVEAADLSPSSTVAEVGPGLGVVTTELLQRTGR-VIAVEIDENLCRHLEERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNWISADTWPPFW 147 N L ++ +D LK+ + + P ++ NLPY I +L +++ +D PP Sbjct: 60 GDREN-LNLVCNDILKISPREILDAGDAEQPYTLVGNLPYYITAPILRHFLESDCQPPHL 118 Query: 148 ESL 150 + Sbjct: 119 VIM 121 >gi|307091992|gb|ADN28331.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ D V+EI G G LT++LL AR V+ IEKD++ L++ Sbjct: 1 HDANQLRRIVAAAELTDDDRVLEISPGLGPLTEVLLAKVAR-VLAIEKDRRLIEFLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + LE++ DDAL+ + + S +++NLPY++ + +L A+ P Sbjct: 60 -RAGGNLELLHDDALRYLRAQDSDWSD-WTVVSNLPYSVASPILVELAQAEKGPRR 113 >gi|73960781|ref|XP_537224.2| PREDICTED: similar to transcription factor B2, mitochondrial isoform 1 [Canis familiaris] Length = 401 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 109/302 (36%), Gaps = 61/302 (20%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 L I E+ ++E GPG LT+ LL A KVI +E ++ F P L+ + + Sbjct: 83 TLAHILENERKTPDKLLLECNPGPGILTEALLKSKA-KVIALESNRNFLPHLQSLRKKVD 141 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----------------------- 131 LE+I D K+D F + PI I L ++G Sbjct: 142 GELEVIYCDFFKMDPRNFGIVKPPIMISETLFQHLGIAAVPWSEDTPLRVVGIFPAKNEK 201 Query: 132 RLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRTKAT 185 ++L+ + S + L + + E++ A +PH Y LSVL K Sbjct: 202 KILWKLLYDLYSSTSVYSYGRVQLNMFITEREYEKLVASPETPHLYQVLSVLWQVACKIK 261 Query: 186 MMFDISPHVFF----------------PSPKVTS------TVIHFIPHLNPIP-----CC 218 ++ + P F P ++ +I PH N Sbjct: 262 LL-HVEPWSSFGVYGQRGRLDDLKNKKPLEQINKHEGQNMCLIQLTPHQNLFTENLTSIN 320 Query: 219 LESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 + + ++ F KR L Q L + +L Q G + +++ +L +DF ++ Sbjct: 321 YDVFFLMLKQCFMKRNFKLMDHLQLLSPVNAAAILKQIGKDGDMKITDLYPQDFKQLFEA 380 Query: 276 LT 277 + Sbjct: 381 IE 382 >gi|307091950|gb|ADN28310.1| putative rRNA methyltransferase [uncultured bacterium] Length = 119 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D N+ +KIA+S V+EIG G G LT+ L R+++++E D + L + Sbjct: 1 IDPNLQRKIADSIAPTADDEVLEIGPGRGALTRHLAPR-VRRLVLVELDNELARRLIEEY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + + + ++ L + E + + +++I N+PYNI T ++F+ + P + Sbjct: 60 AS-DDAVHVVHGSVLDIALEDVSSDPARLKVIGNIPYNITTPIIFHLLEHRPRPAQIVLM 118 Query: 151 T 151 Sbjct: 119 V 119 >gi|307092064|gb|ADN28367.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ V+EIG G G LT++LL A +V+ IE D + L++ Sbjct: 1 HDQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 RLE++ DALK+ + S +++ANLPY++ + +L + P Sbjct: 60 PN--PRLELLHADALKILRHVPRDWSD-WKLVANLPYSVASPILVELAQSPQRP 110 >gi|15920668|ref|NP_376337.1| dimethyladenosine transferase [Sulfolobus tokodaii str. 7] gi|15621451|dbj|BAB65446.1| 220aa long hypothetical rRNA adenine N-6-methyltransferase [Sulfolobus tokodaii str. 7] Length = 220 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 101/253 (39%), Gaps = 39/253 (15%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 +GQ+FL++ +K+ +IEIG G GN+T+ + + +VIE D++F Sbjct: 3 LGQHFLVNEETIKRFVSYVDLS-FRPIIEIGGGKGNITKYI-----KPDVVIEIDKRFSS 56 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 L+++ L +I+ +I+++LPY I I D Sbjct: 57 YLRNLVIADARFLPVIRG-----------------QIVSSLPYYITYEFFEEIIRIDQ-- 97 Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204 + L L+ Q + ++I + +S + + K + +I P F P P+V ST Sbjct: 98 --IKKLILILQYDFVKKILNEP-----TYISFILNYYYKIDVKENIPPWFFKPKPRVYST 150 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264 ++ F E + I + R K + ++K + L + N R + Sbjct: 151 IVLFTRIR----SYDEKINLILKCISKYRNKKITNAVKLCNLSSSLST---DINKRVRDF 203 Query: 265 SIEDFCRITNILT 277 + NI++ Sbjct: 204 KPCQVLELLNIIS 216 >gi|155965922|gb|ABU40943.1| erythromycin resistance methylase [Streptococcus suis] Length = 208 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 25/222 (11%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL +K+I + VIEIG+G G+ T+ L+ + +R V IE D+ + + Sbjct: 1 FLK--KAVKEILNHTNINKQDNVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQK 57 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + N +++I D LK +F K + +I N+P+NI T ++ + Sbjct: 58 VVKPFQN-IKVIHTDILKFNFPK----NKDYKIFGNIPFNISTDIVKKIAFESNSKYSYL 112 Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 + E A++ L +L ++ + F P P V S +I Sbjct: 113 ---------IVENGFAKRLQNTKRALGLLLMVELDIRVLKKVPRAYFHPKPNVDSVLIVL 163 Query: 209 IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 H I + + K + + + L +N Sbjct: 164 ERHQPLILKKDYKEYQSFVY-------KWVNREYRVLFTKNQ 198 >gi|258545948|ref|ZP_05706182.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] gi|258518826|gb|EEV87685.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826] Length = 248 Score = 99.9 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + K++GQ+FL D ++ ++ + G ++EIG G G LT LL + +E Sbjct: 4 VKAAKHLGQHFLRDEAVIARLLAVINAKAGERILEIGPGLGALTLPLL-RQTGAMTAVEY 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 D + L ++ L +I D L +DF + P + Sbjct: 63 DPRVLAPLAKKAATL-GTLHLIHADILTIDFGELLAKQPPPPV 104 >gi|307091942|gb|ADN28306.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 99.9 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ DG ++EIG G G LT +LL A++V+ +EKD + L+ Sbjct: 1 HDHNQLQRIVQAGDVKDGDLILEIGPGLGPLTSLLLGH-AKRVLAVEKDPRLVTFLRKKF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + N LE++ DAL+ + + ++I+NLPY++G+ +L + + P Sbjct: 60 EKEAN-LELVHADALEYLRAP--HDWTNWKMISNLPYSVGSPILVDLANTAKPP 110 >gi|307091956|gb|ADN28313.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +I ++EIG G G LT++LLT GA KV IEKD++ L+D Sbjct: 1 HDANQLARIVALGELSTRDNILEIGPGLGPLTELLLTSGA-KVFAIEKDRRLIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + PN E++QDDAL EK + + ++I+NLPY++ + +L ++ + PP Sbjct: 60 APFPN-FELLQDDALAYLKEKDRDWTD-WKLISNLPYSVASPILVE-LALGSHPP 111 >gi|164653711|gb|ABY65241.1| erythromycin resistance methylase [Streptococcus suis] gi|164653713|gb|ABY65242.1| erythromycin resistance methylase [Streptococcus suis D9] Length = 198 Score = 99.5 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 23/212 (10%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 VIEIG+G G+ T+ L+ + +R V IE D+ + + + N +++I D LK + Sbjct: 1 DNVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFN 58 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 F K + +I N+P+NI T ++ + + E A++ Sbjct: 59 FPK----NKDYKIFGNIPFNISTDIVKKIAFESNSKYSYL---------IVENGFAKRLQ 105 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQ 227 L +L ++ + F P P V S +I H I + + Sbjct: 106 NTKRALGLLLMVELDIRVLKKVPRAYFHPKPNVDSVLIVLERHQPLILKKDYKEYQSFVY 165 Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 K + + + L +N QA N+ Sbjct: 166 -------KWVNREYRVLFTKNQFRQALKHANV 190 >gi|193871|gb|AAA37817.1| house-keeping protein [Mus musculus] Length = 396 Score = 99.5 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 57/303 (18%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 N+++ + E ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 81 RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 138 Query: 93 HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128 L+++ D K+D ++ PI++ LPY Sbjct: 139 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 198 Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 I ++LF+ S ++ + +F +KE + I K Y ++VL Sbjct: 199 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 258 Query: 185 TMM-------FDISPHVFFP-SPKVTSTV---------IHFIPHL-----NPIPCCLESL 222 + F + K +V + P N P + Sbjct: 259 KFLHMEPWSSFSVHMENGHLEKSKHGESVNLLKQNLYLVRMTPRRTLFTENLSPLNYDIF 318 Query: 223 KKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + FGKR + LR SL + N+L Q A + DF ++ + Sbjct: 319 FHLVKHCFGKRNAPIIRHLR-SLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIEQ 377 Query: 279 NQD 281 ++D Sbjct: 378 SED 380 >gi|84490373|ref|NP_032275.2| dimethyladenosine transferase 2, mitochondrial [Mus musculus] gi|123796604|sp|Q3TL26|TFB2M_MOUSE RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=mTFB2M; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|74138927|dbj|BAE27262.1| unnamed protein product [Mus musculus] gi|74139560|dbj|BAE40917.1| unnamed protein product [Mus musculus] gi|74177744|dbj|BAE38967.1| unnamed protein product [Mus musculus] gi|74204361|dbj|BAE39934.1| unnamed protein product [Mus musculus] gi|74223284|dbj|BAE40774.1| unnamed protein product [Mus musculus] gi|148681221|gb|EDL13168.1| transcription factor B2, mitochondrial [Mus musculus] gi|187953023|gb|AAI38837.1| Transcription factor B2, mitochondrial [Mus musculus] gi|187954085|gb|AAI38838.1| Transcription factor B2, mitochondrial [Mus musculus] Length = 396 Score = 98.7 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 57/303 (18%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 N+++ + E ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 81 RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 138 Query: 93 HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128 L+++ D K+D ++ PI++ LPY Sbjct: 139 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 198 Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 I ++LF+ S ++ + +F +KE + I K Y ++VL Sbjct: 199 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 258 Query: 185 TMM-------FDISPHVFFP-SPKVTSTV---------IHFIPHL-----NPIPCCLESL 222 + F + K +V + P N P + Sbjct: 259 KFLHMEPWSSFSVHTENGHLEKSKHGESVNLLKQNLYLVRMTPRRTLFTENLSPLNYDIF 318 Query: 223 KKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + FGKR + LR SL + N+L Q A + DF ++ + Sbjct: 319 FHLVKHCFGKRNAPIIRHLR-SLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIEQ 377 Query: 279 NQD 281 ++D Sbjct: 378 SED 380 >gi|47217190|emb|CAG11026.1| unnamed protein product [Tetraodon nigroviridis] Length = 478 Score = 98.7 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 116/304 (38%), Gaps = 50/304 (16%) Query: 28 NFLLDLNILKKIAESSGSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 +F++D ++ K + + + T+I + GPG LT+ LL G +KV+ +E ++ F P L Sbjct: 155 HFIVDPDLAKLVTQHLQPDNATTIIFDCNPGPGVLTRTLLNSGIQKVVALEGEKFFLPEL 214 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT--------------- 131 +D+ Q +LE++ D K+D N+ P L ++G Sbjct: 215 QDLEIQLDGQLEVVHCDFFKLDPIGSGNLKPPAMFTDKLFTDLGISEASWTDDIPVKVVG 274 Query: 132 ------------RLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 ++++ ++ + E + +KE + + + +Y SVL Sbjct: 275 MLPLRNERGMLLKMVYALFERLSFYRYGRIELNLFISEKEYLKLTSRPGDMMNYRAFSVL 334 Query: 178 TGWRTKATMMFD------I--SPHVFFPS----PKVTSTVIHFIPHLNPI-----PCCLE 220 ++ + S P ++ P + P Sbjct: 335 WQMACDIELLHKESWESFVTSSRRSVRSPKNKLPNDNLCLVRLRPRADLFSAGLTPSNAS 394 Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGE---NLLHQAGIETNLRAENLSIEDFCRITNILT 277 +L + ++ KR+ L L + LL + G++ ++ ++ E++ R+ ++ Sbjct: 395 TLLMMVKQCLAKRKVKLIDRLNLWSPDSGSKLLAEMGMQEDILTGHVYPEEYLRLFQLMD 454 Query: 278 DNQD 281 +Q+ Sbjct: 455 KSQE 458 >gi|307091980|gb|ADN28325.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 98.7 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 8/124 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D + L+ IA + + G T++EIG G G LT +L G +I IE D+ L++ Sbjct: 1 VDRSALEAIAGAVVAGSGDTIVEIGPGRGALTDILAARG-NPLIAIEIDRALSEKLRERY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +P R+ I++ D L+ D + P ++ N+PY I T +LF+ + PPF S Sbjct: 60 GSNP-RVTIVERDVLETDVAALA--AGPFVVVGNVPYYITTPILFHVLR----PPFPRSA 112 Query: 151 TLLF 154 L Sbjct: 113 VFLV 116 >gi|307092014|gb|ADN28342.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 98.7 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ V+EIG G G LT++LL A V+ IE D++ L++ Sbjct: 1 HDGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLAE-AGTVLAIEMDRRLMDYLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + ++L ++ DDAL + +++ANLPY++ + +L + P Sbjct: 60 A-NQSQLTLLHDDALGYLRRGPHDWHD-WKLVANLPYSVASPILVELALSPQRP 111 >gi|269986904|gb|EEZ93180.1| ribosomal RNA adenine methylase transferase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 263 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 18/206 (8%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQNFL+D ++L + E++ V++IGAG G++ ++ +I IEK+ + + Sbjct: 24 GQNFLVDEDVLAEEIENAKLEPSDIVLDIGAGFGSIESVVSKKC--HIIAIEKEIKCYSY 81 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L D PN ++II DAL++ + KF +II+N PYNI R++ S D Sbjct: 82 LIDKYEIDPN-VQIINADALEMIYPKF------NKIISNPPYNITDRIIDKLSSYD---- 130 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + S ++ + +++ + KN + + + K + ++ F+P P+VTS + Sbjct: 131 -FYSGVMIIPNTISKQLLSDKNETKFSSIEKI---FFKFEEITEVKKESFYPVPRVTSRM 186 Query: 206 IHFIPHLNP-IPCCLESLKKITQEAF 230 I N + + + AF Sbjct: 187 IKITKKKNDIFQEIFRRREMLLKNAF 212 >gi|307091902|gb|ADN28286.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 98.3 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 3/116 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++IA G V+EIG G G LT +LL GA +V+ IEKDQ+ +L++ Sbjct: 1 HDQNQLQRIAAFGELKPGDRVLEIGPGLGPLTAVLLAGGA-QVLAIEKDQRLCEVLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + P R E++ DAL+ + + + ++I+NLP+++ + LL A+ P Sbjct: 60 AAEP-RFELLHADALEFLKRERRDWTG-WKLISNLPFSVASPLLVEMAFAEKPPDL 113 >gi|307092012|gb|ADN28341.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 98.3 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++IA ++G ++EIG G G LT L+ GA V+ IE+D++ L+ + Sbjct: 1 HDQNQLRRIAAAAGLKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERVF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 Q + +++ DDAL D+ K + +++ANLPY+ + +L A P Sbjct: 60 PQSA-KFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSAASPILVELAGAAMPP 110 >gi|148704851|gb|EDL36798.1| mCG124508 [Mus musculus] Length = 398 Score = 98.3 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 57/303 (18%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 N+++ + E ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 83 RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 140 Query: 93 HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128 L+++ D K+D ++ PI++ LPY Sbjct: 141 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 200 Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 I ++LF+ S ++ + +F +KE + I K Y ++VL Sbjct: 201 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 260 Query: 185 TMM-------FDISPHVFFP-SPKVTSTV---------IHFIPHL-----NPIPCCLESL 222 + F + K +V + P N P + Sbjct: 261 KFLHMEPWSSFSVHTENGHLEKSKHGESVNLLKQNLYLVRMTPRRTLFTENLSPLNYDIF 320 Query: 223 KKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 + + FGKR + LR SL + N+L Q A + DF ++ + Sbjct: 321 FHLVKHCFGKRNAPIIRHLR-SLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIEQ 379 Query: 279 NQD 281 ++D Sbjct: 380 SED 382 >gi|58613499|gb|AAW79336.1| chloroplast dimethyladenosine synthase [Isochrysis galbana] Length = 176 Score = 98.3 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 10/138 (7%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K+ +GQNFL+D ++ + + + + G ++E G G G LT +LL +++ +E Sbjct: 46 SAKQSLGQNFLVDESMSRGMVGALEACRVGDRLVEFGPGQGALTALLLEAHP-QMLAVEL 104 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNW 137 DQ+ +L++ +HP +L + + D L++D +++I N P+ + + LF Sbjct: 105 DQRMEAVLRE---EHP-QLALRRGDMLEIDLADLSAERGGSLQLITNTPFYLTSPFLFKL 160 Query: 138 ISADTWPPFWESLTLLFQ 155 + E + L Q Sbjct: 161 LGQLEH---VEQVVLSMQ 175 >gi|114452126|gb|ABI75037.1| erythromycin resistance protein [uncultured bacterium] Length = 163 Score = 98.3 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 17/178 (9%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG G G LT + LG R + +E D + K +E++ DD L F Sbjct: 1 EIGPGSGALTHPMAHLG-RAITAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NF 52 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 ++P I+ N+P+++ T +L + A P W LL Q EV R A + Sbjct: 53 RLPATPCVIVGNIPFHLTTAILRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM- 106 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQE 228 ++ + + F P P V ++ +P ++ + + Sbjct: 107 -MTAQWSPWFTFHLGSRVPRTAFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHT 163 >gi|307091864|gb|ADN28267.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D + L++I E + V+EIG G G LT++L+ A V+ IE D++ IL+ Sbjct: 1 HDAHQLRRIIELARLQPDDFVLEIGPGLGPLTELLVEKSAH-VLAIELDRRLIEILESHL 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +L+I+ D L +K + S+ ++++NLPY++ + +L + P Sbjct: 60 Q--SPKLKIVHGDGLGYVRDKTRDWSN-WKLVSNLPYSVASPILVELAESPHAP 110 >gi|56605644|ref|NP_001008294.1| dimethyladenosine transferase 2, mitochondrial [Rattus norvegicus] gi|81883501|sp|Q5U2T7|TFB2M_RAT RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; Flags: Precursor gi|55249767|gb|AAH85870.1| Transcription factor B2, mitochondrial [Rattus norvegicus] Length = 397 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 102/302 (33%), Gaps = 55/302 (18%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 N+++ + E ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 82 RNLVRDLLEHQNPSH-QLILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKN 139 Query: 93 HPNRLEIIQDDALKVDFEKFFNISS----------------------PIRIIANLPYN-- 128 L+++ D K+D + PI++ LP Sbjct: 140 ADGELQVVHCDFFKIDPRYQELVRPDVNSHTIFQNLGIKAVPWSAGVPIKVFGILPNKHE 199 Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 + ++LF+ S ++ + +F +KE + I K Y L VL + Sbjct: 200 RRLLWKILFDLYSCESIYRYGRVELNMFISEKEFRKLIATPKRPDLYQVLGVLWQVACEI 259 Query: 185 TMM-------FDISPHVFFPSPKVTST----------VIHFIPHL-----NPIPCCLESL 222 + F + S ++ P N P + Sbjct: 260 KFLHMEPWSSFSVHAENGHLEKSKHSESLNLLKQNLYLVRMTPRRTLFTENLSPLNYDMF 319 Query: 223 KKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + + FGKR + +SL + N+L Q A + DF R+ + + Sbjct: 320 FHLVKHCFGKRNAPIIHHLRSLSTVDPINILRQIRKRPGDTAAKMYPHDFKRLFETIERS 379 Query: 280 QD 281 +D Sbjct: 380 ED 381 >gi|158321869|ref|YP_001514376.1| rRNA (adenine-N(6)-)-methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158142068|gb|ABW20380.1| rRNA (adenine-N(6)-)-methyltransferase [Alkaliphilus oremlandii OhILAs] Length = 293 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 16/258 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL ++ ++ S VIEIG G G +T+ L+ +K+ V+E D + Sbjct: 13 SQNFLHSKKLVNELIRKSNISKDDIVIEIGGGKGIITEQLVE-KCKKLYVVEYDYHIYKK 71 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L++ S N +EI+ D L+ + K ++ +++PYNI +L S+ P Sbjct: 72 LRNRLSSIKN-IEIVYGDFLEFELPK----EHSYKVFSSIPYNITAAILSKLTSSYNSP- 125 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 E + ++ QKE + + R S+L ++ + F P P V S Sbjct: 126 --EDIYIILQKEAALKYAGNPYNRESMR-SLLLKPYFDFRIIRSLERADFNPIPNVDSVF 182 Query: 206 IHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNL 259 +H N + + F K ++ K + N + + G + Sbjct: 183 MHIKKRENLLIEQDQEKLYYDFIAYIFNHIGKDMKARCKDIFSYNQIKRLSCNIGFNISD 242 Query: 260 RAENLSIEDFCRITNILT 277 +LS E + + + Sbjct: 243 SPTSLSYEQWLGVFQYFS 260 >gi|307092030|gb|ADN28350.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ V+EIG G G LT++LL A V+ IE D++ L++ Sbjct: 1 HDGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLAE-AGTVLAIEMDRRLMDYLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + ++L ++ DDAL + +++ANLPY++ + +L + P Sbjct: 60 ANL-SQLTLLHDDALGYLRRGPHDWHD-WKLVANLPYSVASPILVELALSPQRP 111 >gi|289670945|ref|ZP_06492020.1| dimethyladenosine transferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 89 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249 P F P PKV S V+ +P + + FG+RRKTLR +L + Sbjct: 1 PGAFRPPPKVDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAH 60 Query: 250 LHQAGIETNLRAENLSIEDFCRITNI 275 A + + RAE L + DF R+ N+ Sbjct: 61 FEAAQVRPDARAEQLEVADFIRLANV 86 >gi|307091860|gb|ADN28265.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I + + +V+EIG G G LT++L+ V+ IE D++ L+ Sbjct: 1 HDANQLRRIVDLARLNPDDSVLEIGPGLGPLTELLVE-KVGHVLAIELDRRLVEFLESHL 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +L+I+ D L +K + S+ +++ANLPY++ + +L + P Sbjct: 60 Q--SPKLKILHGDGLGYVRDKTRDWSN-WKLVANLPYSVASPILVELAESPNAP 110 >gi|154281463|ref|XP_001541544.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150411723|gb|EDN07111.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 142 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 9/112 (8%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 +GQ+ L + + + I + + TV+EIG G GNLT +L A+KVI +E Sbjct: 32 FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90 Query: 79 DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 D + + P RLE++ D +K D F I+N PY Sbjct: 91 DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQ 136 >gi|307092062|gb|ADN28366.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++IA ++ ++EIG G G LT L+ GA V+ IE+D++ L+ Sbjct: 1 HDQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERAF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 Q + +++ DDAL D+ K + +++ANLPY++ + +L A P Sbjct: 60 PQSA-KFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSVASPILVELAGAAMPP 110 >gi|307092004|gb|ADN28337.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N + +IA ++EIG G G LT+ LL GA KV IEKD++ L+D Sbjct: 1 HDANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + N +++QDDAL EK + S ++I+NLPY++ + +L ++ + PP Sbjct: 60 ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111 >gi|18542252|gb|AAL75499.1| ErmA [Staphylococcus aureus] gi|18542254|gb|AAL75500.1| ErmA [Staphylococcus aureus] Length = 180 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 15/186 (8%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 + +K+I + VIEIG+G G+ T+ L+ + +R V IE D + K+ Sbjct: 1 ITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEA 59 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149 + N +++IQ D LK F K N +I N+PYNI T ++ T+ + Sbjct: 60 VNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQAKY 110 Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 L+ +K +R+ + L +L M+ + P F P P V S +I Sbjct: 111 SYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLE 165 Query: 210 PHLNPI 215 H I Sbjct: 166 RHQPLI 171 >gi|312836920|dbj|BAJ34818.1| erythromycin resistance protein [Photobacterium damselae subsp. piscicida] Length = 303 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 12/175 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL + +++ + S V+EIG G G +T+ L + + V IE D Sbjct: 19 SQNFLHNTKLVEDLLFKSNITKEDFVVEIGPGKGIITKALSKIC-KAVTAIEFDSVLADK 77 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L + + II+ D LK + ++ +N+P+NI +L + ++ P Sbjct: 78 LTHEFK--SSNVSIIEADFLKYNLPDH-----NYKVFSNIPFNITASILNKLLDSENPP- 129 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 L+ Q E + + S+L K ++ S F P+P Sbjct: 130 --LDTFLIMQYEPFLKYAGAPSYKE-SYKSLLYKPFFKTNILHSFSKFDFKPAPN 181 >gi|307091906|gb|ADN28288.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 8/124 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D + L+ IA + + G T++EIG G G LT +L +I IE D+ L++ Sbjct: 1 VDQSALESIANAVVAWPGDTIVEIGPGRGALTDILARRD-NTLIAIEIDKALSEKLRERY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + + +R+ I+++D L+ + + ++ P ++ N+PY I T +LF + PPF S Sbjct: 60 ASN-SRVTIVENDVLETNVAEL--VAGPFVVVGNVPYYITTPILFRVLR----PPFPRSA 112 Query: 151 TLLF 154 L Sbjct: 113 VFLV 116 >gi|307092032|gb|ADN28351.1| putative rRNA methyltransferase [uncultured bacterium] Length = 130 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L KI ++ V+EIG G G LT++LL A +V IE D++ L + Sbjct: 1 HDQNQLHKIVAAAEIGPDDKVLEIGPGLGPLTELLLE-KAGEVFAIETDERLVDFLCERF 59 Query: 91 SQHPN-----------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 N L ++ DDAL + + S +++ANLPY++ + +L Sbjct: 60 GLRANESAGAKETPAHNLCLLHDDALAFIKRERRDWSD-WKLVANLPYSVASPILVELAQ 118 Query: 140 ADTWP 144 + P Sbjct: 119 SPKHP 123 >gi|307091966|gb|ADN28318.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D Sbjct: 1 HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIEFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + N +++QDDAL EK + ++++NLPY++ + +L ++ + PP Sbjct: 60 ATFSN-FDLLQDDALAYLKEKDRDWRD-WKLVSNLPYSVASPILVE-LALGSHPPECLVA 116 Query: 151 TL 152 TL Sbjct: 117 TL 118 >gi|313848515|emb|CBY77552.1| rRNA methylase [Pasteurella multocida] gi|323721360|gb|ADY05332.1| Erm methyltransferase [Pasteurella multocida] Length = 301 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 12/175 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 QNFL + +++ + S V+EIG G G +T+ L + + V IE D Sbjct: 17 SQNFLHNTKLVEDLLFKSNITKEDFVVEIGPGKGIITKALSKIC-KAVNAIEFDSVLADK 75 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 L + + II+ D LK + ++ +N+P+NI +L + ++ P Sbjct: 76 LSHEFK--SSNVSIIEADFLKYNLPDH-----NYKVFSNIPFNITASILNKLLDSENPP- 127 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 L+ Q E + + S+L K ++ S F P+P Sbjct: 128 --LDTFLIMQYEPFLKYAGAPSYKE-SYKSLLYKPFFKTNILHSFSKFDFKPAPN 179 >gi|307091962|gb|ADN28316.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N + +IA ++EIG G G LT+ LL GA KV IEKD++ L+D Sbjct: 1 HDANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + N +++QDDAL EK + S ++I++LPY++ + +L ++ + PP Sbjct: 60 ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLISDLPYSVASPILVE-LALGSHPP 111 >gi|307091938|gb|ADN28304.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091976|gb|ADN28323.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N+ + I + G G ++EIG G G LT L AR + ++EKD + L Sbjct: 1 HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLGQQF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLPY + T L+ + +A Sbjct: 60 R--SDRVELFHIDALDFDLRTLYGRG-PVRIIGNLPYYVSTPLIAKYTAA 106 >gi|307091910|gb|ADN28290.1| putative rRNA methyltransferase [uncultured bacterium] Length = 136 Score = 96.0 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 19/133 (14%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +I ++ V+EIG G G LT+ LL A KV+ IEKD++ L+ Sbjct: 1 HDGNQLCRIIAAAELTGSDKVLEIGPGLGALTE-LLWAQAGKVLAIEKDRRLIEFLQKRF 59 Query: 91 SQH-----------------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 +++ DDALK + + S +++ANLPY++ + + Sbjct: 60 GSEFRLQPVGHTRAEPPKGGTPNFQLLHDDALKFLKREQRDWSD-WKLVANLPYSVASPI 118 Query: 134 LFNWISADTWPPF 146 L P Sbjct: 119 LVELAQCPRRPKH 131 >gi|213421151|ref|ZP_03354217.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 89 Score = 96.0 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 10/99 (10%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 + + K+ VIE D+ L+ +L I Q Sbjct: 53 EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQ 89 >gi|307091876|gb|ADN28273.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 96.0 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N+ + I + G G ++EIG G G LT L AR + ++EKD + L Sbjct: 1 HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLGQQF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLPY + T L+ + +A Sbjct: 60 R--SDRVELFHIDALDFDLRTLYGRG-PVRIIGNLPYYVSTPLIAKYTAA 106 >gi|307091974|gb|ADN28322.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D Sbjct: 1 HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + N L+++QDDAL EK + S ++++NLPY++ + +L ++ + PP Sbjct: 60 ATFSN-LDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPILVE-LALGSHPP 111 >gi|307092002|gb|ADN28336.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 95.6 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D Sbjct: 1 HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + N +++QDDAL EK + S ++++NLPY++ + +L ++ + PP Sbjct: 60 ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPILVE-LALGSHPP 111 >gi|307092052|gb|ADN28361.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 95.6 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ V+EIG G G LT++LLT A V+ I+ D++ LK+ Sbjct: 1 HDGNQLRRIVSAAALKGTDKVLEIGPGLGPLTELLLTE-AGSVLAIDLDRRLVDFLKERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 ++ N ++ DDAL + +++ANLPY++ + +L + P Sbjct: 60 AETKNP-TLLHDDALGYLRRGPHDWHD-WKLVANLPYSVASPILVELAQSPLRP 111 >gi|224770|prf||1112181A gene ermE Length = 133 Score = 95.6 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ GQNFL D + +IAE++ + V+E G G LT+ L AR+V E D + Sbjct: 36 RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 L++ S HPN +E++ D L + P + +P Sbjct: 95 LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIP 133 >gi|18657023|gb|AAL78110.1|AC093568_20 Putative dimethyladenosine transferse [Oryza sativa] gi|21321757|gb|AAM47292.1|AC122146_11 Putative dimethyladenosine transferse [Oryza sativa Japonica Group] Length = 120 Score = 95.3 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 38/77 (49%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 I +K GQ+ L + ++ I E +G TV+EIG G GNLT+ LL G + V+ +E Sbjct: 31 GIPFEKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVE 90 Query: 78 KDQQFFPILKDISSQHP 94 D + L P Sbjct: 91 LDPRMVLELNRRFQGDP 107 >gi|307091988|gb|ADN28329.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++IA++ V+EIG G G LT++LL A +VI IEKD + +L++ Sbjct: 1 HDQNQLRRIADAGVLAKTDRVLEIGPGLGPLTELLLER-AGQVIAIEKDLRLVTVLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + N LE+ DAL V + + +++ANLPY++ + +L P Sbjct: 60 ASTGN-LELQHADALVVVKDHTRDWHD-WKLVANLPYSVASPILVELAQNARRP 111 >gi|307091880|gb|ADN28275.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N + +IA ++EIG G G LT++LL GA KV IEKD++F L+D Sbjct: 1 HDANQIARIAALGELSVSDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + P+ E++QDDAL EK + S ++I+NLPY++ + +L P Sbjct: 60 ATFPD-FELLQDDALAYLKEKDRDWSD-WKLISNLPYSVASSILVELALGSRPP 111 >gi|307092046|gb|ADN28358.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++IA ++ ++EIG G G LT L+ GA V+ IE+D++ L+ + Sbjct: 1 HDQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERVF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 Q + ++ DDAL D+ K + +++ NLPY++ + +L P Sbjct: 60 PQSA-KFKLPHDDAL--DYVKKNRDWAGWKLVVNLPYSVASPILVELAGTAMPP 110 >gi|307092042|gb|ADN28356.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +I ++G +++EIG G G LT LL A KV+ IEKD + L + Sbjct: 1 HDQNQLLRIVAAAGLSKSDSILEIGPGLGPLTD-LLIANAAKVMAIEKDARLLAFLGEKY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 Q L+++ DAL+ + + S ++++NLPY++ + +L P Sbjct: 60 QQTS--LDLVYADALEFLQTEQRDWSD-WKVVSNLPYSVASPILVELACGARAPKKI 113 >gi|307091958|gb|ADN28314.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N + +IA ++EIG G G LT+ LL GA KV+ IEKD++ L+D Sbjct: 1 HDANQIARIAALGELSASDKILEIGTGLGPLTEFLLAYGA-KVLAIEKDRRLVDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + N +++QDDAL EK + S ++I+NLPY++ + +L ++ + PP Sbjct: 60 ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111 >gi|307091948|gb|ADN28309.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N + +IA ++EIG G G LT++LL GA KV IEKD++F L+D Sbjct: 1 HDANQIARIAALGELSVSDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + + E++QDDAL EK + S ++I+NLPY++ + +L P Sbjct: 60 ATFSD-FELLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVELALGSRPP 111 >gi|307091882|gb|ADN28276.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 94.5 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +IA ++EIG G G LT+ LL GA KV IEKD++ L+D Sbjct: 1 HDANQLARIAALGELSASDKILEIGPGLGPLTEFLLASGA-KVFAIEKDRRLIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 N +++QDDAL EK + S ++I+NLPY++ + +L ++ + PP Sbjct: 60 VSVSN-FDLLQDDALAYLNEKDSDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111 >gi|307091946|gb|ADN28308.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N+ + I + G G ++EIG G G LT L R + ++EKD + L Sbjct: 1 HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLGQQF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLPY + T L+ + +A Sbjct: 60 R--SDRVELFHIDALNFDLRTLYGRG-PVRIIGNLPYYVSTPLIAKYTAA 106 >gi|307092060|gb|ADN28365.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++IA ++ ++EIG G G LT L+ GA V+ IE+D++ L+ + Sbjct: 1 HDQNQLQRIAAAAELKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERVF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 Q + +++ DDA D+ K + +++ANLPY++ + +L A P Sbjct: 60 PQSA-KFKLLHDDA--PDYVKKNRDWAGWKLVANLPYSVASPILVELAGAAMPP 110 >gi|307092066|gb|ADN28368.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +I ++G +++EIG G G LT LL A KV+ IEKD + L + Sbjct: 1 HDQNPLLRIVAAAGLSKSDSILEIGPGLGPLTD-LLIANAAKVMAIEKDARLLAFLGEKY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 Q L+++ DAL+ + + S ++++NLPY++ + +L P Sbjct: 60 QQTS--LDLVYADALEFLQTEQRDWSD-WKVVSNLPYSVASPILVELACGARAPKKI 113 >gi|307091944|gb|ADN28307.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +IA ++EIG G G LT++LL GA KV IEKD++F L+D Sbjct: 1 HDANQLARIAALGELSTADKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + N +++QDDAL EK + S ++I+NLPY++ + +L P Sbjct: 60 ANLSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVELALGSRPP 111 >gi|281347296|gb|EFB22880.1| hypothetical protein PANDA_013195 [Ailuropoda melanoleuca] Length = 396 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 106/306 (34%), Gaps = 69/306 (22%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 +I + ++E GPG LTQ LL A KVI +E ++ F P L+ + + +L Sbjct: 86 RILK--EENADRLILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKL 142 Query: 98 EIIQDDALKVDFEKFFNISSPIRI---------IANLPYNIGTR--------------LL 134 E++ D K+D PI I I +P++ T +L Sbjct: 143 EVVYCDFFKMDPRNSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKIL 202 Query: 135 FNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRTKATMMF 188 + + S + L + + E++ A +PH Y LSVL K ++ Sbjct: 203 WKLLYDIYSSTSVYSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVLWQVACKIKLL- 261 Query: 189 DISPHVFFPSPKVTS-------------------------TVIHFIPHLNPIP-----CC 218 + P F V S +I P N Sbjct: 262 HVEPWSSF---GVYSQSGQQKKQKNKKPLEPKNKQVGQNMCLIQLTPLRNLFTENLTSVN 318 Query: 219 LESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 + + ++ F KR L Q L + +L Q G +++ L +DF + Sbjct: 319 YDVFFHMLKQCFMKRNFKLMDHLQLLSPVNATAILKQIGKHGDMKITELYPQDFKLLFET 378 Query: 276 LTDNQD 281 + +++ Sbjct: 379 IECSKE 384 >gi|307091964|gb|ADN28317.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +IA ++EIG G G LT++LL GA KV IEKD++F L+D Sbjct: 1 HDANQLARIAVLGELSASDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 + N +++QDDAL EK + ++I+NLPY++ + +L P Sbjct: 60 ATFSN-FDLLQDDALAYLREKDRDWGD-WKLISNLPYSVASPILVELALGSNPP 111 >gi|301777091|ref|XP_002923964.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like [Ailuropoda melanoleuca] Length = 399 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 106/306 (34%), Gaps = 69/306 (22%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 +I + ++E GPG LTQ LL A KVI +E ++ F P L+ + + +L Sbjct: 86 RILK--EENADRLILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKL 142 Query: 98 EIIQDDALKVDFEKFFNISSPIRI---------IANLPYNIGTR--------------LL 134 E++ D K+D PI I I +P++ T +L Sbjct: 143 EVVYCDFFKMDPRNSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKIL 202 Query: 135 FNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRTKATMMF 188 + + S + L + + E++ A +PH Y LSVL K ++ Sbjct: 203 WKLLYDIYSSTSVYSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVLWQVACKIKLL- 261 Query: 189 DISPHVFFPSPKVTS-------------------------TVIHFIPHLNPIP-----CC 218 + P F V S +I P N Sbjct: 262 HVEPWSSF---GVYSQSGQQKKQKNKKPLEPKNKQVGQNMCLIQLTPLRNLFTENLTSVN 318 Query: 219 LESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275 + + ++ F KR L Q L + +L Q G +++ L +DF + Sbjct: 319 YDVFFHMLKQCFMKRNFKLMDHLQLLSPVNATAILKQIGKHGDMKITELYPQDFKLLFET 378 Query: 276 LTDNQD 281 + +++ Sbjct: 379 IECSKE 384 >gi|26354937|dbj|BAC41095.1| unnamed protein product [Mus musculus] Length = 396 Score = 93.7 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 106/304 (34%), Gaps = 59/304 (19%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 N+++ + E ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 81 RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 138 Query: 93 HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128 L+++ D K+D ++ PI++ LPY Sbjct: 139 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 198 Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 I ++LF+ S ++ + +F +KE + I K Y ++VL Sbjct: 199 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 258 Query: 185 TMM-------FDI------------SPHVFFPSPKVTSTVIHFIPHL-----NPIPCCLE 220 + F + V P + ++ P N P + Sbjct: 259 KFLHMEPWSSFSVHTENGHLEKSKHGESVNLLKPNLY--LVRMTPRRTLFTGNLSPLNYD 316 Query: 221 SLKKITQEAFGKRRKTLRQ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 + + FGKR + + SL + N+L Q A + DF ++ + Sbjct: 317 IFFHLVKPCFGKRHAPIIRHLPSLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIE 376 Query: 278 DNQD 281 ++D Sbjct: 377 PSED 380 >gi|307091870|gb|ADN28270.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D +L+ I+ S TVIEIG G G LT+ LL+ GA VI IEKD + L Sbjct: 1 IDEGVLEFISNSLDFKKDETVIEIGPGLGFLTRFLLSHGA-SVIAIEKDPAYVEFLTHYY 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 + I+ D LK + P+++ N+PYNI + +L I Sbjct: 60 KNK--KFRIVASDVLKTKISEL-TSGDPVKVCGNIPYNITSPILEWLILQKN 108 >gi|307092000|gb|ADN28335.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L +IA ++EIG G G LT++LL GA KV IEKD++ L+D Sbjct: 1 HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + N +++QDDAL EK + ++++NLPY++ + +L ++ + PP Sbjct: 60 ATFSN-FDLLQDDALAYLKEKDRDRRD-WKLVSNLPYSVASPILVE-LALGSHPP 111 >gi|301603803|ref|XP_002931532.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Xenopus (Silurana) tropicalis] Length = 414 Score = 92.9 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 111/306 (36%), Gaps = 60/306 (19%) Query: 29 FLLDLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 F+ D ++ K + +G ++E GPG LTQ LL GAR V+ +E ++ F P Sbjct: 87 FIGDPSMAKTFLKCLQPWDDRGNGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLP 145 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL----------- 133 L+ + + +LE++ D K+D + P+ + L ++ Sbjct: 146 SLQLLENNMDGQLEVVHCDFFKLDPLGHGTMQPPVMYSSVLFNSLCIPEAPWIKDVPFKV 205 Query: 134 ----------------LFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLS 175 ++N ++ + E + +K+ + ++ + +Y LS Sbjct: 206 FGILPQKNESTFLWKQIYNLFERNSIYRYGRIELNVFISEKQYTKLVSQPGDMRNYQALS 265 Query: 176 VLTGWRTKATMM-------------FD---ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 L ++ F I V P+ + ++ P + L Sbjct: 266 ALFQASCDIQLLHMEPWSSFLTPLRFKGAAIPRSVIVPNDHL--CLVRITPRRDLFTDSL 323 Query: 220 -----ESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGIETNLRAENLSIEDFCR 271 + + ++ GKR+ L L G LL Q + +++ N+S E + + Sbjct: 324 TRENGNTFIVMVKQCLGKRKAKLVDRLNSWDPGNGHKLLRQLALPEDIQTGNVSPEQYKQ 383 Query: 272 ITNILT 277 + I+ Sbjct: 384 LFEIME 389 >gi|307092020|gb|ADN28345.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 92.6 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 31 LDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 D N+ + +S + V+EIG G G +T+ L G V IE D+ +L+ Sbjct: 1 HDQNLAQATVRASLEEISEVSQVVEIGPGMGAITEFFLA-GGTAVTAIEVDKGLAEVLRA 59 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 S N+ +++ D LKV+ ++ NLPY I T L+ W+ P Sbjct: 60 RFSG-DNKFHLVEGDVLKVEMSPLIMAR---VVVGNLPYYISTPLIARWMECPQPP 111 >gi|307092006|gb|ADN28338.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 92.6 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 4/110 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D+N+ + I G V+EIG G G LT++L+ + +IEKDQ+ L++ Sbjct: 1 HDMNLARWIVGQLRVRSGEHVVEIGPGLGALTELLVREDIL-LTLIEKDQRMVKWLRERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + R+E+ DAL D + S PI+II NLPY + T L+ +ISA Sbjct: 60 A--SPRVELFHIDALDFDLRTLYG-SGPIKIIGNLPYYVATALIAKYISA 106 >gi|307091990|gb|ADN28330.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 92.2 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N+ + I + G G ++EIG G G LT L R + ++EKD + L Sbjct: 1 HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLGQQF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 +R+E+ DAL D + P+RII NLP+ + T L+ + +A Sbjct: 60 R--SDRVELFHIDALDFDLRTLYGRG-PVRIIGNLPHYVSTPLIAKYTAA 106 >gi|146271005|gb|ABQ17973.1| ribosomal methylase [Streptococcus uberis] gi|146285379|gb|ABQ18265.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 92.2 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 21/195 (10%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG G G+LT L + +++V IE D F L + R+ +I D L+ Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ---- 54 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F +I+ N+PY++ T+++ + + + F K + + Sbjct: 55 FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HR 105 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232 L +L + + + F P PKV S +I H +P L F Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160 Query: 233 RRKTLRQSLKRLGGE 247 K + + ++L + Sbjct: 161 -SKWVNREYRQLFTK 174 >gi|307092038|gb|ADN28354.1| putative rRNA methyltransferase [uncultured bacterium] Length = 130 Score = 91.8 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 13/125 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L KI ++ V+EIG G G LT++LL A +V I+ D++ L + Sbjct: 1 HDQNQLHKIVAAAEIGPDDKVLEIGPGLGPLTELLLE-KAGEVFAIKTDERLVDFLCERF 59 Query: 91 SQHPN-----------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 N L ++ DDAL + + S +++ NLPY++ + +L Sbjct: 60 GLRANESVGAKETPAHNLCLLHDDALAFIKRERRDWSD-WKLVTNLPYSVASPILVELAQ 118 Query: 140 ADTWP 144 + P Sbjct: 119 SPKRP 123 >gi|146285381|gb|ABQ18266.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 21/195 (10%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG G G+LT L + +++V IE D F L + R+ +I D L+ Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDILQFQ---- 54 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F +I+ N+PY++ T+++ + + + F K + + Sbjct: 55 FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HR 105 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232 L +L + + + F P PKV S +I H +P L F Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160 Query: 233 RRKTLRQSLKRLGGE 247 K + + ++L + Sbjct: 161 -SKWVNREYRQLFTK 174 >gi|229077320|ref|ZP_04209997.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2] gi|228705976|gb|EEL58287.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2] Length = 106 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG 245 + VF P P V S +I + P+ + ++ + +F +RRKTL +L Sbjct: 1 MTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNL 60 Query: 246 G---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 + +L + GI+ R E LSIE+F ++N L ++ Sbjct: 61 NGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 104 >gi|159466026|ref|XP_001691210.1| ribosomal RNA adenine methylase transferase [Chlamydomonas reinhardtii] gi|158279182|gb|EDP04943.1| ribosomal RNA adenine methylase transferase [Chlamydomonas reinhardtii] Length = 203 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 82/240 (34%), Gaps = 80/240 (33%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 +I KK +GQNF++D IL+ I ++ + Sbjct: 39 RIKAKKSLGQNFMMDDTILRDIVAAAAVPE------------------------------ 68 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 L+++ DA+K + ++++ANLPYNI LL Sbjct: 69 -------------------LQLVHGDAVK---------AKRVKVVANLPYNITKELLQ-- 98 Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 L L+ Q E GER+T + Y F IS + Sbjct: 99 -LLLPLGGLVSDLHLMLQHEAGERLTERTPGGREYR---------------FRISRFKYD 142 Query: 197 PSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253 P P V ++ F P ++L ++ +AF +RRK +R SL L A Sbjct: 143 PVPGVDGALVTFALRPPGARLQVPSEQALMELVDKAFSERRKKMRNSLSPLYSSEEFRGA 202 >gi|307092016|gb|ADN28343.1| putative rRNA methyltransferase [uncultured bacterium] Length = 118 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D N L++I ++ V+EIG G G LT++LLT A V+ I+ DQ+ LK+ Sbjct: 1 HDGNQLRRIVSAAALKGTDKVLEIGPGLGPLTELLLTE-AGSVLAIDLDQRLVDFLKERF 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 ++ N L + DDA + +++ANLPY++ + +L + P Sbjct: 60 AETKN-LTLPHDDAPGYLRRGPHDWHD-WKLVANLPYSVASPILVELAQSPLRP 111 >gi|146271003|gb|ABQ17972.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 91.0 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 21/195 (10%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG G G+LT L + +++V IE D F L + R+ +I D L+ Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ---- 54 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F +I+ ++PY++ T+++ + + + F K + + Sbjct: 55 FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HR 105 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232 L +L + + + F P PKV S +I H +P L F Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160 Query: 233 RRKTLRQSLKRLGGE 247 K + + ++L + Sbjct: 161 -SKWVNREYRQLFTK 174 >gi|146271001|gb|ABQ17971.1| ribosomal methylase [Streptococcus uberis] Length = 174 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 21/195 (10%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG G G+LT L + +++V IE D F L + R+ +I D L+ Sbjct: 1 EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDILQFQ---- 54 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 F +I+ ++PY++ T+++ + + + F K + + Sbjct: 55 FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HR 105 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232 L +L + + + F P PKV S +I H +P L F Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160 Query: 233 RRKTLRQSLKRLGGE 247 K + + ++L + Sbjct: 161 -SKWVNREYRQLFTK 174 >gi|164653709|gb|ABY65240.1| erythromycin resistance methylase [Streptococcus suis] Length = 198 Score = 90.3 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 23/208 (11%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG+G G+ T+ +R V IE D+ + + + N +++I D LK +F K Sbjct: 5 EIGSGKGHFTKE-HVKMSRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNFPK- 61 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 + +I N+P+NI T ++ + + E A++ Sbjct: 62 ---NKDYKIFGNIPFNISTDIVKKIAFESNSKYSYL---------IVENGFAKRLQNTKR 109 Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFG 231 L +L ++ + F P P V S +I H I + + Sbjct: 110 ALGLLLMVELDIRVLKKVPRAYFHPKPNVDSVLIVLERHQPLILKKDYKEYQSFVY---- 165 Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNL 259 K + + + L +N QA N+ Sbjct: 166 ---KWVNREYRVLFTKNQFRQALKHANV 190 >gi|307092036|gb|ADN28353.1| putative rRNA methyltransferase [uncultured bacterium] Length = 119 Score = 89.9 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 4/122 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D +++IA S G L G TV+EIG G G +T L A V+ IE D L+ Sbjct: 1 IDAQAIERIAASLGDLHGHTVVEIGPGAGAITGTLAAR-ADHVLAIELDNGLAAHLRTQF 59 Query: 91 SQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149 +++ ++Q D L DF + + NLPY I +++L ++ Sbjct: 60 PA--DKVTVLQQDVLNFDFAAASAAAGERLAVAGNLPYGITSQILLKLAASHKALDRAVL 117 Query: 150 LT 151 + Sbjct: 118 MV 119 >gi|167470195|ref|ZP_02334899.1| dimethyladenosine transferase [Yersinia pestis FV-1] Length = 81 Score = 89.5 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 206 IHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 + IP++ P P + L +IT +AF +RRKT+R SL L L + GI+ LRAEN Sbjct: 1 MRLIPYVQMPHPGGDVRMLSRITTQAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAEN 60 Query: 264 LSIEDFCRITNILT 277 +S+ +C++ N L+ Sbjct: 61 ISVAQYCKLANWLS 74 >gi|149641645|ref|XP_001513371.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 295 Score = 89.1 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 100/282 (35%), Gaps = 63/282 (22%) Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 GPG LT+ LL GAR V+ +E D F P L+ + + +LE++ D +D + Sbjct: 7 GPGILTRALLQTGAR-VVALESDAAFLPHLQSLKNSLDGQLEVVHCDFFALDCNSEI-LK 64 Query: 117 SPIRI---------IANLPYNIGTRL-LFNWISADTWPP-FWESLTLLFQ---------- 155 P + I +P+ + + ++ + P W L L+Q Sbjct: 65 PPAMLSEHLFEGLGIQEVPWTADIPVKIVGFLPSRREPHTLWRLLYSLYQRLSVFSYGRI 124 Query: 156 --------KEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FDISPHVFFPS-- 198 KE + ++ N Y LSVL ++ F ++ P Sbjct: 125 ELNMFLSEKEYTR-LVSKPNEKKYQALSVLWQIACDIELLHMEPLSSFVMNSRNCVPQKS 183 Query: 199 PKVTS----TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTLRQSLKRLG---G 246 KV S ++ P + P + +++F K + L +L G Sbjct: 184 KKVESPSNLCLVKMTPRKDLFSESLTPLNSTFFFHLVKQSFVKHKFKLMDNLNLWNPFDG 243 Query: 247 ENLLHQAGIETNLRAEN-----LSIEDFCRITNILTDNQDIA 283 EN+L + R E+ L +F + + +Q + Sbjct: 244 ENILKRL-----KRQEDDTFNSLFPHEFKYLFEAMEGSQSFS 280 >gi|307092018|gb|ADN28344.1| putative rRNA methyltransferase [uncultured bacterium] Length = 115 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 + I ++ G L TV+EIG G G LT LL A+ VI +E D L+ N Sbjct: 7 RAIVDALGDLSQATVLEIGPGRGVLT-GLLAARAKHVIAVELDAALAASLQ------GNS 59 Query: 97 LEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 +E++ D LKVD + + +I NLPY I + +L + + + Sbjct: 60 VEVLCQDILKVDLTGLAVQHGTRLFVIGNLPYYISSPILTHLFAHSAFIDR 110 >gi|324998303|ref|ZP_08119415.1| rRNA (adenine-N(6)-)-methyltransferase [Pseudonocardia sp. P1] Length = 294 Score = 88.3 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 17/195 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 + GQNFL D + +A + ++E+GAG G LT LL LG R V +E D Sbjct: 13 RHEHGQNFLADPAVPAALAAVAAGWPPRPLLELGAGDGALTAALLDLG-RPVTAVELDPY 71 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L + +++ D ++ + + +++N+PY + T LL Sbjct: 72 RASRLGERFGTA---VDVRHGDLVR------EPLGRAVDVVSNVPYALTTPLL----RRL 118 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 P W LL Q EV + A + L+ + + + F P P V Sbjct: 119 LAAPRWGHALLLLQWEVARKRAAVGGTT---ALTARWWPWYEFRLHGRVPARSFRPVPSV 175 Query: 202 TSTVIHFIPHLNPIP 216 ++ P+ Sbjct: 176 DGGILEIARRDRPLV 190 >gi|207109769|ref|ZP_03243931.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_CA4C1] Length = 157 Score = 87.9 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%) Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 +PY I TRL+ N + P L ++ QKEV + A+ + LSVL A Sbjct: 1 MPYYIATRLVLNALKD----PKCRGLLVMTQKEVALKFCARDSQN---ALSVLAHAIGDA 53 Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQE 228 T++FD+ P F P PKV S+V I + E+L+ + Sbjct: 54 TLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKA 113 Query: 229 AFGKRRKTLRQSLKR 243 F RKTL +LK+ Sbjct: 114 CFSSPRKTLSNNLKK 128 >gi|212722044|ref|NP_001131280.1| hypothetical protein LOC100192593 [Zea mays] gi|194691072|gb|ACF79620.1| unknown [Zea mays] Length = 159 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 + K GQ+ L + +L IA + G V+E+G G GNLT LL A +V +E Sbjct: 45 RFRLHKPRGQHLLTNPRVLDAIARHAAISPGDAVLEVGPGTGNLTARLLASQAARVTAVE 104 Query: 78 KDQQFFPILKDISSQ 92 D + + ++ Sbjct: 105 IDPRMVEAVTARAAA 119 >gi|253730901|ref|ZP_04865066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725362|gb|EES94091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 72 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +K GQNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ Sbjct: 1 RKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRD 59 Query: 82 FFPILK 87 L+ Sbjct: 60 LAARLQ 65 >gi|167521732|ref|XP_001745204.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776162|gb|EDQ89782.1| predicted protein [Monosiga brevicollis MX1] Length = 229 Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 4/179 (2%) Query: 80 QQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +L+ + + Q A K + I P ++ +L Sbjct: 9 PGLPELLRIFNVRAKKKLSQNFILHQPCADKFVRAAGDLRDRVVVEIGGGPGSLTRAILE 68 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195 ++TL+FQ+E GER+ A NS H ++S + + + +VF Sbjct: 69 AARREGLAAYGPLAMTLIFQREYGERLFAPPNSLHRAKISAFVQQYCNVSPGYLLPRNVF 128 Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254 P P+V + V+H P + + + F R+ LR ++ L G +A Sbjct: 129 VPEPRVDTMVVHLESKPEPPAVDPAVFEDVLRHLFTTPRRLLRNGMQPLLGVATCAEAD 187 Score = 69.1 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 L +L + + KK + QNF+L K ++G L V+EIG GPG+LT+ +L Sbjct: 9 PGLPELLRIFNVRAKKKLSQNFILHQPCADKFVRAAGDLRDRVVVEIGGGPGSLTRAILE 68 Query: 68 LGARKVIV 75 R+ + Sbjct: 69 AARREGLA 76 >gi|414445|gb|AAC43194.1| Homologous to Swiss-Prot Accession Number P06992, 16S rRNA methyltransferase [Mycoplasma genitalium] Length = 112 Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 6/108 (5%) Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220 R+ A+ NS Y + T +F I H F P PKV ST+I N Sbjct: 1 RLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKPKVDSTLILLE--KNKSVSYDF 58 Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAGIETNLRAENL 264 ++ F +RRK L +LK + L + ++T++RA+ L Sbjct: 59 KFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQNLKTSIRAQEL 106 >gi|307092034|gb|ADN28352.1| putative rRNA methyltransferase [uncultured bacterium] gi|307092056|gb|ADN28363.1| putative rRNA methyltransferase [uncultured bacterium] Length = 115 Score = 86.4 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 + I ++ G L TV+EIG G G LT LL A+ VI +E D L+ N Sbjct: 7 RAIVDALGDLSQATVLEIGPGRGVLT-GLLAARAKHVIAVELDAALAVSLQ------GNS 59 Query: 97 LEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 +E++ D LKVD + + +I NLPY I + +L + + + Sbjct: 60 VEVLCQDILKVDLTGLAVQHGTRLLVIGNLPYYISSPILTHLFAHSAFIDR 110 >gi|332796502|ref|YP_004458002.1| rRNA adenine methylase transferase [Acidianus hospitalis W1] gi|332694237|gb|AEE93704.1| rRNA adenine methylase transferase [Acidianus hospitalis W1] Length = 218 Score = 85.2 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 34/216 (15%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + QNFL+D + K + D V+E+G G GN+++++ + IE D +F Sbjct: 2 KLSQNFLIDKFFIFKFSSYVK-NDIKPVVEVGCGKGNISKVI-----NPDLCIEIDDKFI 55 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 LK +I DA F +I+++LPY+I + Sbjct: 56 KYLKS--------YNLIIADA-------RFLPIKRGQIVSSLPYSITEDFFLEV----SK 96 Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 SL L+ QK+ ++I N Y +S L + I P F PSPKV S Sbjct: 97 LDQVISLVLILQKDFIDKIL---NYATY--ISFLLNYIFDIKTHEVIPPSAFTPSPKVYS 151 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 ++ F+ E LK +++ F R K L+ Sbjct: 152 IIVTFMRKRTYNAKVDEYLKCVSR--F--RNKKLKN 183 >gi|307091908|gb|ADN28289.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 84.1 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 10/122 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88 +D ++ ++IA + G G V+++GAG G LT L GAR V+ +E D + L + Sbjct: 1 VDRSLARRIAATVG--AGEVVLDLGAGTGALTIPLARAGAR-VVAVEADPIWADRLSGRL 57 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + + +E++ D L+V S P R+++N PY I T LL + P+ Sbjct: 58 VGAGLSGTVELVVGDILEVPLP-----SEPYRVVSNPPYGITTELLRRLLERPELGPYRA 112 Query: 149 SL 150 L Sbjct: 113 DL 114 >gi|118088134|ref|XP_419535.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 392 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 94/291 (32%), Gaps = 58/291 (19%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 +GS V+E GPG LT+ LL G R V+ +E F L+ + + +L++I Sbjct: 85 AGSGPQPVVLECAPGPGVLTRTLLNAGVR-VVALESHPAFLSKLQSLENSLDGQLKVIYG 143 Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIG---------------------------TRLLF 135 D ++D + P L +G RLLF Sbjct: 144 DFFRLDPLVTGAVKPPAVCSDKLFEAMGIAAVPWRADVPVKIFGIFPQRKERNTLWRLLF 203 Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNS-PHYGRLSVLTGWRTKATMMFD--- 189 + + E + +KE + +TA+ Y LSVL ++ Sbjct: 204 ILYECSSIYRYGRVELNIFISEKEY-KVLTAKPGELRIYQALSVLWQAGCDIQLLHMEPW 262 Query: 190 -------------ISPHVFFPSPKVTSTVIHFIPHLNPI-----PCCLESLKKITQEAFG 231 I P+ + ++ P N P + + ++ Sbjct: 263 SSFLTNMKNGRLAIPKSTRLPNDHL--CLVRLTPQQNLFTGGLKPANSATFIFMVKQCLT 320 Query: 232 KRRKTLRQSLKRL---GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 K R L L + LL I + N+ ED+ R+ L ++ Sbjct: 321 KPRSKLIDRLNSWSLDNADKLLKALEIPEYVETGNVYPEDYKRLFCALQNS 371 >gi|149040853|gb|EDL94810.1| transcription factor B2, mitochondrial [Rattus norvegicus] Length = 367 Score = 83.3 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 96/276 (34%), Gaps = 33/276 (11%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 N+++ + E ++E GPG LT LL GAR V+ E ++ F P L+ + Sbjct: 82 RNLVRDLLEHQNPSH-QLILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKN 139 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRI--------IANLPYNIGTRL-LFNWISADTW 143 L+++ D K+D + + I +P++ G + +F + Sbjct: 140 ADGELQVVHCDFFKIDPRYQELVRPDVNSHTIFQNLGIKAVPWSAGVPIKVFGILPNKHE 199 Query: 144 PPFW----------ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193 ES+ + E+ I+ ++ + SV + + Sbjct: 200 RRLLWKILFDLYSCESIYRYGRVELNMFISEKEFREPWSSFSV----HAENGHLEKSKHS 255 Query: 194 VFFPSPKVTSTVIHFIPHL-----NPIPCCLESLKKITQEAFGKRRKTL---RQSLKRLG 245 K ++ P N P + + + FGKR + +SL + Sbjct: 256 ESLNLLKQNLYLVRMTPRRTLFTENLSPLNYDMFFHLVKHCFGKRNAPIIHHLRSLSTVD 315 Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 N+L Q A + DF R+ + ++D Sbjct: 316 PINILRQIRKRPGDTAAKMYPHDFKRLFETIERSED 351 >gi|213626131|gb|AAI71547.1| Transcription factor B2, mitochondrial [Danio rerio] Length = 437 Score = 83.3 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 112/310 (36%), Gaps = 56/310 (18%) Query: 29 FLLDLNILKKIAESS--GSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 F++D + + + DG VI E GPG LT+ LL GA++V+ +E D F P Sbjct: 112 FIVDPALATIVTDHLSRDIDDGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPE 171 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--------------- 130 L ++ S+ +L+++ D K+D + P+ L ++ Sbjct: 172 LLELESRLEGQLDVVHCDFFKLDPIGNGIMKPPVMYSEKLFSDLAISEVPWTADVPVKIV 231 Query: 131 ------------TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++++N + + E + + QKE + +T ++ +Y S Sbjct: 232 GLFTQRNERNLMWKMIYNLFERRSIFRYGRVELIMFISQKEYTKLVTRPRDYKNYQAFSA 291 Query: 177 LTGWRTKATMMFDISPHVFFPSPK---------VTS-----TVIHFIPHLNPI-----PC 217 L ++ + F + S ++ P + P Sbjct: 292 LAQMAFDIELLHEEPLSSFLTTTNNNRKSASGSTLSQSENLCLVRITPREDLFSSHLTPL 351 Query: 218 CLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAG-IETNLRAENLSIEDFCRIT 273 +L + ++ KR+ L S G L+ G ++ L ++ +++ R+ Sbjct: 352 NGSTLVLMVKQCLAKRKGKLIQQINSWSPGMGSELISNLGFLDDTLTG-DVYPDEYKRLF 410 Query: 274 NILTDNQDIA 283 ++ + A Sbjct: 411 ELMEQSGSFA 420 >gi|149003646|ref|ZP_01828511.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] gi|147758378|gb|EDK65378.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] Length = 73 Score = 83.3 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%) Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 + QKEV +RI+AQ N+ YG LS+ + A + F + VF P+P V S ++ + Sbjct: 1 MMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRP 60 Query: 213 NPIPCCLESLKKI 225 P + Sbjct: 61 EPAVAVEDENFFF 73 >gi|165972415|ref|NP_001107089.1| dimethyladenosine transferase 2, mitochondrial [Danio rerio] gi|159155139|gb|AAI54810.1| Tfb2m protein [Danio rerio] Length = 437 Score = 83.3 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 112/310 (36%), Gaps = 56/310 (18%) Query: 29 FLLDLNILKKIAESS--GSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 F++D + + + DG VI E GPG LT+ LL GA++V+ +E D F P Sbjct: 112 FIVDPALATIVTDHLSRDIDDGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPE 171 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--------------- 130 L ++ S+ +L+++ D K+D + P+ L ++ Sbjct: 172 LLELESRLEGQLDVVHCDFFKLDPIGNGIMKPPVMYSEKLFSDLAISEVPWTADVPVKIV 231 Query: 131 ------------TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSV 176 ++++N + + E + + QKE + +T ++ +Y S Sbjct: 232 GLFTQRNERNLMWKMIYNLFERRSIFRYGRVELIMFISQKEYTKLVTRPRDYKNYQAFSA 291 Query: 177 LTGWRTKATMMFDISPHVFFPSPK---------VTS-----TVIHFIPHLNPI-----PC 217 L ++ + F + S ++ P + P Sbjct: 292 LAQMAFDIELLHEEPLSSFLTTTNNNRKSASGSTLSQSENLCLVRITPREDLFSSHLTPL 351 Query: 218 CLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAG-IETNLRAENLSIEDFCRIT 273 +L + ++ KR+ L S G L+ G ++ L ++ +++ R+ Sbjct: 352 NGSTLVLMVKQCLAKRKGKLIQQINSWSPGMGSELISNLGFLDDTLTG-DVYPDEYKRLF 410 Query: 274 NILTDNQDIA 283 ++ + A Sbjct: 411 ELMEQSGSFA 420 >gi|41886|emb|CAA29786.1| unnamed protein product [Escherichia coli] Length = 67 Score = 82.9 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTLGARKVIVIEK 78 + + ++ VIE Sbjct: 53 EPVGERL-DQLTVIEL 67 >gi|322820265|gb|EFZ26937.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi] Length = 482 Score = 82.9 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A V + + + + ++ANLP+++ T LL + + + L + QKE+ Sbjct: 268 AFAVTDRWWSDGDAKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEI 327 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-- 216 ERI A S H+ RLSVL M ++P +V ++ P P+ Sbjct: 328 AERIIAPAGSIHFSRLSVLCQCFFHVQMRQTFKEMTYYPKTEVLGAMLTLQPRSVPLVPG 387 Query: 217 CCLESLKKITQEAFG--KRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270 +L T +R T+ ++L + +L + ++ L +L+ E+ C Sbjct: 388 MDAATLIHFTDLLMKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEIC 447 Query: 271 RIT 273 ++ Sbjct: 448 KLA 450 Score = 72.5 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 27 QNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 Q F+L+L + +I ++E+G G G LT+ LLT V+ IE D++F Sbjct: 91 QRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGTGALTRSLLTRPCVAVLGIEADERF 150 Query: 83 FPILKDISSQHPNRLEIIQDDALKVD 108 L+ I + + D L+V+ Sbjct: 151 NAHLEQIRQYTDGKFHWVNADVLRVN 176 >gi|18657022|gb|AAL78109.1|AC093568_19 Putative dimethyladenosine transferse [Oryza sativa] gi|21321758|gb|AAM47293.1|AC122146_12 Putative dimethyladenosine transferse [Oryza sativa Japonica Group] Length = 233 Score = 82.5 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%) Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248 + + F P PKV S+V+ P P + + + F ++ KTL K+ Sbjct: 64 KVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKRVLE 123 Query: 249 LLH---------QAGIETNLRAENLSIEDFCRITNILTD 278 LL Q + E +S +D +++++ D Sbjct: 124 LLEKNYKTMQSLQLTSDAEKGEEKMSPDDVALLSSMVDD 162 >gi|3859994|gb|AAC72947.1| unknown [Homo sapiens] Length = 125 Score = 82.5 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 + + F P PKV S+V+ P P P + + + F ++ KTL + K + Sbjct: 1 MKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQ 60 Query: 248 NLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278 LL + + + E+ SI D +I ILT Sbjct: 61 QLLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 94 >gi|307091998|gb|ADN28334.1| putative rRNA methyltransferase [uncultured bacterium] Length = 114 Score = 82.5 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D ++ ++ ++ G V+++GAG G LT + GAR V+ +E D + L Sbjct: 1 VDRSVAARM--AATVTAGELVLDLGAGTGALTVPMAEAGAR-VVAVEADPVWAEKLAGRL 57 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 ++ +E++ D L V S P R++AN P+ + T LL + P+ Sbjct: 58 AKSGLTVEVVAGDILAVPLP-----SEPYRVVANPPFGVTTALLRRLLDQPERGPY 108 >gi|307091972|gb|ADN28321.1| putative rRNA methyltransferase [uncultured bacterium] Length = 114 Score = 82.5 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D ++ ++ ++ G V+++GAG G LT L GAR V+ +E D + L Sbjct: 1 VDRSVAARM--AATVTAGELVLDLGAGTGALTIPLAEAGAR-VVAVEADPVWAEKLAGRL 57 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + +E++ D L V S P R+ AN P+ + T LL + P+ Sbjct: 58 AGSSLTVEVVAGDILAVPLP-----SEPFRVAANPPFGVTTALLRRLLDQPERGPY 108 >gi|261332379|emb|CBH15374.1| rRNA dimethyltransferase, putative [Trypanosoma brucei gambiense DAL972] Length = 467 Score = 82.2 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A +V + + + + +IANLP+NI T LL + + + L + Q+EV Sbjct: 266 AFEVSDRWWSDGDAKLEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEV 325 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 E I A S H+ RLSVL ++ ++P V ++ P P+ Sbjct: 326 AECIIAPAGSIHFSRLSVLCQCFFHTQLLRTFREMTYYPKTAVLGALVTLQPRAVPLLPG 385 Query: 219 LES--LKKITQEAF--GKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270 L++ L T G+R T+ ++L++ +L + + L +L+ E+ C Sbjct: 386 LDAATLIHFTDLLMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTAEEVC 445 Query: 271 RIT 273 ++ Sbjct: 446 KLA 448 Score = 69.5 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 6 KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59 K+ LK + H + K GQ F+L+L + ++A ++E+G G G Sbjct: 49 KAEGLKQLFKVPHAGYLAK--YGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGAG 106 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 LT+ LLT V+ IE+D++F L+ I + + D L+++ + Sbjct: 107 ALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRINELEIVE 161 >gi|71747126|ref|XP_822618.1| rRNA dimethyltransferase [Trypanosoma brucei TREU927] gi|70832286|gb|EAN77790.1| rRNA dimethyltransferase, putative [Trypanosoma brucei] Length = 467 Score = 82.2 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 13/183 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A +V + + + + +IANLP+NI T LL + + + L + Q+EV Sbjct: 266 AFEVSDRWWSDGDAKLEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEV 325 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 E I A S H+ RLSVL ++ ++P V +I P P+ Sbjct: 326 AECIIAPAGSIHFSRLSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPLLPG 385 Query: 219 LES--LKKITQEAF--GKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270 L++ L T G+R T+ ++L++ +L + + L +L+ E+ C Sbjct: 386 LDAATLIHFTDLLMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVC 445 Query: 271 RIT 273 ++ Sbjct: 446 KLA 448 Score = 69.1 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 6 KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59 K+ LK + H + K GQ F+L+L + ++A ++E+G G G Sbjct: 49 KAEGLKQLFKVPHAGYLAK--YGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGAG 106 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 LT+ LLT V+ IE+D++F L+ I + + D L+++ + Sbjct: 107 ALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTNGKFQWTNGDVLRINELEIVE 161 >gi|33413476|gb|AAM97535.1| ErmC [Trypanosoma brucei] Length = 467 Score = 82.2 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 13/183 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A +V + + + + +IANLP+NI T LL + + + L + Q+EV Sbjct: 266 AFEVSDRWWSDGDAKLEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEV 325 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 E I A S H+ RLSVL ++ ++P V +I P P+ Sbjct: 326 AECIIAPAGSIHFSRLSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPLLPG 385 Query: 219 LES--LKKITQEAF--GKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270 L++ L T G+R T+ ++L++ +L + + L +L+ E+ C Sbjct: 386 LDAATLIHFTDLLMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVC 445 Query: 271 RIT 273 ++ Sbjct: 446 KLA 448 Score = 69.5 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 6 KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59 K+ LK + H + K GQ F+L+L + ++A ++E+G G G Sbjct: 49 KAEGLKQLFKVPHAGYLAK--YGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGAG 106 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 LT+ LLT V+ IE+D++F L+ I + + D L+++ + Sbjct: 107 ALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRINELEIVE 161 >gi|147121|gb|AAA24306.1| 6-m-2 A methyltransferase [Escherichia coli str. K-12 substr. W3110] Length = 62 Score = 82.2 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MNN+ H + +K GQNFL D ++ I + G ++EIG G LT Sbjct: 1 MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52 Query: 63 QMLLTL 68 + + Sbjct: 53 EPVGER 58 >gi|297720837|ref|NP_001172781.1| Os02g0122900 [Oryza sativa Japonica Group] gi|255670560|dbj|BAH91510.1| Os02g0122900 [Oryza sativa Japonica Group] Length = 131 Score = 81.8 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 +++++ S + +P+K +GQN++L+ + +++ ++G +G V+EIG G G+LT LL Sbjct: 50 STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLD 109 Query: 68 LGARKVIVIEK 78 GA V +EK Sbjct: 110 AGA-TVFAVEK 119 >gi|15897649|ref|NP_342254.1| dimethyladenosine transferase [Sulfolobus solfataricus P2] gi|284174975|ref|ZP_06388944.1| dimethyladenosine transferase [Sulfolobus solfataricus 98/2] gi|6015727|emb|CAB57554.1| rRNA N-6 methyl transferase [Sulfolobus solfataricus P2] gi|13813916|gb|AAK41044.1| rRNA adenine N-6-methyltransferase (erm/ksgA) [Sulfolobus solfataricus P2] gi|261602418|gb|ACX92021.1| ribosomal RNA adenine methylase transferase [Sulfolobus solfataricus 98/2] Length = 194 Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 33/191 (17%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 ++EIG G GN+T+ L I IE D + LK ++ DA + Sbjct: 7 PILEIGCGKGNITRFL-----EPDICIELDDKMIEYLK--------NFNLVIADARYLPV 53 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + +++++LPY I + I + LTL+ QK+ ++I N Sbjct: 54 LR-------GQLVSSLPYQITSDFFKEVIKLNN----IRKLTLILQKDFVDKIF---NDS 99 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 Y +S L + + I P F P PKV S + F L I++ Sbjct: 100 TY--ISFLLNYIYNIQIKDIIPPSCFSPRPKVYSIITIFNRIREYDKEVDSILSCISR-- 155 Query: 230 FGKRRKTLRQS 240 R KTLR++ Sbjct: 156 --YRNKTLRKA 164 >gi|312100661|ref|XP_003149435.1| hypothetical protein LOAG_13883 [Loa loa] gi|307755400|gb|EFO14634.1| hypothetical protein LOAG_13883 [Loa loa] Length = 120 Score = 81.4 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L + ++ I E S TV E+G+G GNLT +L+ A+KVI E D++ Sbjct: 54 GQHILKNPGVVNAIVEKSAIKATDTVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAE 112 Query: 86 LKDIS 90 LK Sbjct: 113 LKKRV 117 >gi|322502902|emb|CBZ37984.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 463 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 6 KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59 K+ +K + H + K Q F+L+L + ++ ++E+G G G Sbjct: 30 KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 87 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +LT+ LLT V+ IE D++F P L+ I S N+ + + D LKVD + + P Sbjct: 88 SLTRSLLTRPCVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPH 147 Query: 120 RIIANL 125 + AN+ Sbjct: 148 FVKANI 153 Score = 73.3 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A V + N ++ + +IANLP+ I T LL + + + + Q+EV Sbjct: 244 AFDVTNYWWSNGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREV 303 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 ERI A S + RLSVL + ++P +V ++ P P+ Sbjct: 304 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHG 363 Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264 L++ L T + A T+ +SL R L L + ++ + +L Sbjct: 364 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVHYMLQELRMDGAMTVLDL 417 Query: 265 SIEDFCRIT 273 S+ + R+ Sbjct: 418 SVVEVTRLA 426 >gi|126307164|ref|XP_001377347.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 414 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 97/283 (34%), Gaps = 56/283 (19%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 V+E G +T LL G +VI +E+D+ F P L+ + + +LE+I D D Sbjct: 117 QVVLENRPGM--ITSALLNAG-LQVIALERDRTFLPYLESLKNHLNGQLEVIYCDFFSRD 173 Query: 109 FEKFFNISSPIRIIANLPYNIG---------------------------TRLLFNWISAD 141 + P L N G + L++ S Sbjct: 174 PSNNRATTPPPLFTETLFKNFGIREIPWEADVPVKIVGFFPVKNERSALWKFLYDLYSCS 233 Query: 142 TWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD--ISPHVFFP 197 + + E + +KE ++I ++ + Y LSVL + ++ +S V F Sbjct: 234 SIYDYGRIELNMFISEKEY-KKIISKPDEKFYQPLSVLCQTAYEIKLLHMEPLSSFVTFK 292 Query: 198 SPKVTS-----------TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKT----L 237 S K S I P N P + + ++ F +RK L Sbjct: 293 SGKFQSFKCKESKNKHLNFIRLTPRRNLFTDNLTPMNSCNFMYLVKQCFT-KRKYKLIDL 351 Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 S +LL Q + +L E+F + +L ++ Sbjct: 352 FNSWSICNKGDLLQQLNRNKHDPVGSLEPEEFKYLFEVLESSE 394 >gi|213028963|ref|ZP_03343410.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 61 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 +K GQNFL D ++ I + G ++EIG G LT+ + K+ VIE D+ Sbjct: 2 ARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DKLTVIELDR 60 Query: 81 Q 81 Sbjct: 61 D 61 >gi|146100568|ref|XP_001468894.1| rRNA dimethyltransferase [Leishmania infantum] gi|134073263|emb|CAM71986.1| putative rRNA dimethyltransferase [Leishmania infantum JPCM5] Length = 463 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 6 KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59 K+ +K + H + K Q F+L+L + ++ ++E+G G G Sbjct: 30 KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 87 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +LT+ LLT V+ IE D++F P L+ I S N+ + + D LKVD + + P Sbjct: 88 SLTRSLLTRPCVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPH 147 Query: 120 RIIANL 125 + AN+ Sbjct: 148 FVKANI 153 Score = 72.9 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A V + N ++ + +IANLP+ I T LL + + + + Q+EV Sbjct: 244 AFDVTNYWWSNGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREV 303 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 ERI A S + RLSVL + ++P +V ++ P P+ Sbjct: 304 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHG 363 Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264 L++ L T + A T+ +SL R L L + ++ + +L Sbjct: 364 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVHYMLQELRMDGAMTVLDL 417 Query: 265 SIEDFCRIT 273 S+ + R+ Sbjct: 418 SVVEVTRLA 426 >gi|71400767|ref|XP_803154.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener] gi|70865852|gb|EAN81708.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi] Length = 482 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A V + + + + ++ANLP+++ T LL + + + L + QKE+ Sbjct: 268 AFAVTDRWWSDGDAKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEI 327 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-- 216 ERI A S H+ RLSVL + ++P +V ++ P P+ Sbjct: 328 AERIIAPAGSIHFSRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPG 387 Query: 217 CCLESLKKITQEAFG--KRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270 +L T +R T+ ++L + +L + ++ L +L+ E+ C Sbjct: 388 MDAATLIHFTDVLMKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEIC 447 Query: 271 RIT 273 ++ Sbjct: 448 KLA 450 Score = 72.5 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 27 QNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 Q F+L+L + +I ++E+G G G LT+ LLT V+ IE D++F Sbjct: 91 QRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGTGALTRSLLTRPCVAVLGIEADERF 150 Query: 83 FPILKDISSQHPNRLEIIQDDALKVD 108 L+ I + + D L+V+ Sbjct: 151 NAHLEQIRQYTDGKFHWVNADVLRVN 176 >gi|15609125|ref|NP_216504.1| methyltransferase [Mycobacterium tuberculosis H37Rv] gi|15841466|ref|NP_336503.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium tuberculosis CDC1551] gi|31793167|ref|NP_855660.1| methyltransferase [Mycobacterium bovis AF2122/97] gi|148661799|ref|YP_001283322.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148823202|ref|YP_001287956.1| methyltransferase [Mycobacterium tuberculosis F11] gi|167970487|ref|ZP_02552764.1| hypothetical methyltransferase [Mycobacterium tuberculosis H37Ra] gi|215404208|ref|ZP_03416389.1| methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215411680|ref|ZP_03420476.1| methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|215427345|ref|ZP_03425264.1| methyltransferase [Mycobacterium tuberculosis T92] gi|215430906|ref|ZP_03428825.1| methyltransferase [Mycobacterium tuberculosis EAS054] gi|215446198|ref|ZP_03432950.1| methyltransferase [Mycobacterium tuberculosis T85] gi|218753706|ref|ZP_03532502.1| methyltransferase [Mycobacterium tuberculosis GM 1503] gi|219557950|ref|ZP_03537026.1| methyltransferase [Mycobacterium tuberculosis T17] gi|224990365|ref|YP_002645052.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798962|ref|YP_003031963.1| methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254364806|ref|ZP_04980852.1| hypothetical methyltransferase [Mycobacterium tuberculosis str. Haarlem] gi|254551011|ref|ZP_05141458.1| methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186962|ref|ZP_05764436.1| methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|260201089|ref|ZP_05768580.1| methyltransferase [Mycobacterium tuberculosis T46] gi|260205267|ref|ZP_05772758.1| methyltransferase [Mycobacterium tuberculosis K85] gi|289443479|ref|ZP_06433223.1| methyltransferase [Mycobacterium tuberculosis T46] gi|289447606|ref|ZP_06437350.1| methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289554234|ref|ZP_06443444.1| methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289570086|ref|ZP_06450313.1| methyltransferase [Mycobacterium tuberculosis T17] gi|289574662|ref|ZP_06454889.1| methyltransferase [Mycobacterium tuberculosis K85] gi|289746067|ref|ZP_06505445.1| methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289750568|ref|ZP_06509946.1| methyltransferase [Mycobacterium tuberculosis T92] gi|289754091|ref|ZP_06513469.1| methyltransferase [Mycobacterium tuberculosis EAS054] gi|289758101|ref|ZP_06517479.1| methyltransferase [Mycobacterium tuberculosis T85] gi|289762144|ref|ZP_06521522.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294996920|ref|ZP_06802611.1| methyltransferase [Mycobacterium tuberculosis 210] gi|297634559|ref|ZP_06952339.1| methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297731547|ref|ZP_06960665.1| methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298525486|ref|ZP_07012895.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776222|ref|ZP_07414559.1| methyltransferase [Mycobacterium tuberculosis SUMu001] gi|306780003|ref|ZP_07418340.1| methyltransferase [Mycobacterium tuberculosis SUMu002] gi|306784753|ref|ZP_07423075.1| methyltransferase [Mycobacterium tuberculosis SUMu003] gi|306789110|ref|ZP_07427432.1| methyltransferase [Mycobacterium tuberculosis SUMu004] gi|306793444|ref|ZP_07431746.1| methyltransferase [Mycobacterium tuberculosis SUMu005] gi|306797828|ref|ZP_07436130.1| methyltransferase [Mycobacterium tuberculosis SUMu006] gi|306803708|ref|ZP_07440376.1| methyltransferase [Mycobacterium tuberculosis SUMu008] gi|306808282|ref|ZP_07444950.1| methyltransferase [Mycobacterium tuberculosis SUMu007] gi|306968106|ref|ZP_07480767.1| methyltransferase [Mycobacterium tuberculosis SUMu009] gi|306972331|ref|ZP_07484992.1| methyltransferase [Mycobacterium tuberculosis SUMu010] gi|307080041|ref|ZP_07489211.1| methyltransferase [Mycobacterium tuberculosis SUMu011] gi|307084616|ref|ZP_07493729.1| methyltransferase [Mycobacterium tuberculosis SUMu012] gi|313658880|ref|ZP_07815760.1| methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|1403467|emb|CAA98396.1| PROBABLE METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv] gi|13881706|gb|AAK46317.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium tuberculosis CDC1551] gi|31618759|emb|CAD96863.1| PROBABLE METHYLTRANSFERASE [Mycobacterium bovis AF2122/97] gi|134150320|gb|EBA42365.1| hypothetical methyltransferase [Mycobacterium tuberculosis str. Haarlem] gi|148505951|gb|ABQ73760.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148721729|gb|ABR06354.1| hypothetical methyltransferase [Mycobacterium tuberculosis F11] gi|224773478|dbj|BAH26284.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320465|gb|ACT25068.1| methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289416398|gb|EFD13638.1| methyltransferase [Mycobacterium tuberculosis T46] gi|289420564|gb|EFD17765.1| methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289438866|gb|EFD21359.1| methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289539093|gb|EFD43671.1| methyltransferase [Mycobacterium tuberculosis K85] gi|289543840|gb|EFD47488.1| methyltransferase [Mycobacterium tuberculosis T17] gi|289686595|gb|EFD54083.1| methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289691155|gb|EFD58584.1| methyltransferase [Mycobacterium tuberculosis T92] gi|289694678|gb|EFD62107.1| methyltransferase [Mycobacterium tuberculosis EAS054] gi|289709650|gb|EFD73666.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713665|gb|EFD77677.1| methyltransferase [Mycobacterium tuberculosis T85] gi|298495280|gb|EFI30574.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308215334|gb|EFO74733.1| methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308327107|gb|EFP15958.1| methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308330486|gb|EFP19337.1| methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308334320|gb|EFP23171.1| methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308338121|gb|EFP26972.1| methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308341814|gb|EFP30665.1| methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308345301|gb|EFP34152.1| methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308349603|gb|EFP38454.1| methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308354231|gb|EFP43082.1| methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308358209|gb|EFP47060.1| methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308362140|gb|EFP50991.1| methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308365794|gb|EFP54645.1| methyltransferase [Mycobacterium tuberculosis SUMu012] gi|323719477|gb|EGB28604.1| methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326903599|gb|EGE50532.1| methyltransferase [Mycobacterium tuberculosis W-148] gi|328458717|gb|AEB04140.1| methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 179 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 26/191 (13%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G + L D + ++ G V +IGAG G LT L+ GAR V+ +E + Sbjct: 8 RRAWGWHRLHDEWAARV-VSAAAVRPGELVFDIGAGEGALTAHLVRAGAR-VVAVELHPR 65 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +L++ + ++ DA P R++AN PY I +RLL ++ + Sbjct: 66 RVGVLRERFPG----ITVVHADA-----ASIRLPGRPFRVVANPPYGISSRLLRTLLAPN 116 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + + + + + S + R ++ G + F P P V Sbjct: 117 SGLVAADLV-------LQRALVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHV 161 Query: 202 TSTVIHFIPHL 212 S V+ Sbjct: 162 DSAVLVVRRRK 172 >gi|322495324|emb|CBZ30628.1| putative rRNA dimethyltransferase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 464 Score = 80.2 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 6 KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59 K+ +K + H + K Q F+L+L + ++ ++E+G G G Sbjct: 31 KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 88 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +LT+ LLT V+ IE D++F P L+ I + N+ + + D LKVD + N + P Sbjct: 89 SLTRSLLTRPCVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLNSAFPH 148 Query: 120 RIIANL 125 + AN+ Sbjct: 149 FVKANV 154 Score = 75.6 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 25/189 (13%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEV 158 A V + N ++ + +IANLP+ I T LL + + + + + Q+EV Sbjct: 245 AFDVTNHWWSNGNAKVEVIANLPFEIITELLMRYAADCSQHRGLFAFGRVPVHVFTQREV 304 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 ERI A S + RLSVL + ++P +V ++ P P+ Sbjct: 305 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHG 364 Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264 L++ L T + A T+ +SL R L L + ++ + +L Sbjct: 365 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVQYMLQELRMDGAMTVLDL 418 Query: 265 SIEDFCRIT 273 S+ + R+ Sbjct: 419 SVVEVTRLA 427 >gi|71411035|ref|XP_807784.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener] gi|70871858|gb|EAN85933.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi] Length = 482 Score = 80.2 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A V + + + + ++ANLP+++ T LL + + + L + QKE+ Sbjct: 268 AFAVTDRWWSDGDAKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEI 327 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-- 216 ERI A S H+ RLSVL + ++P +V ++ P P+ Sbjct: 328 AERIIAPAGSIHFSRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPG 387 Query: 217 CCLESLKKITQEAFG--KRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270 +L T +R T+ ++L + +L + ++ L +L+ E+ C Sbjct: 388 MDAATLIHFTDLLMKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEIC 447 Query: 271 RIT 273 ++ Sbjct: 448 KLA 450 Score = 72.5 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 27 QNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 Q F+L+L + +I ++E+G G G LT+ LLT V+ IE D++F Sbjct: 91 QRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGTGALTRSLLTRPCVAVLGIEADERF 150 Query: 83 FPILKDISSQHPNRLEIIQDDALKVD 108 L+ I + + D L+V+ Sbjct: 151 NAHLEQIRQYTDGKFHWVNADVLRVN 176 >gi|254232160|ref|ZP_04925487.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C] gi|124601219|gb|EAY60229.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C] Length = 150 Score = 79.9 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 25/167 (14%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 G V +IGAG G LT L+ GAR V+ +E + +L++ + ++ DA Sbjct: 2 RPGELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRERFPG----ITVVHADA- 55 Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 P R++AN PY I +RLL ++ ++ + + + + + Sbjct: 56 ----ASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLV-------LQRALVCK 104 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 S + R ++ G + F P P V S V+ Sbjct: 105 FASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVRRRK 143 >gi|307091984|gb|ADN28327.1| putative rRNA methyltransferase [uncultured bacterium] Length = 114 Score = 79.5 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 ++ + G V+EIGAGPG +T L G R +I IE D ++ L++ +HP Sbjct: 4 TANRLVAEAAFEPGDLVVEIGAGPGAITFALARRGLR-IIAIEPDPEWAKRLRERVGEHP 62 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 R+ I+ D L ++ P R++ +LP+ T +L + Sbjct: 63 -RIRIVNADFLSIELPA-----EPFRVVGSLPFGRTTDMLRRLLDDPR 104 >gi|311894003|dbj|BAJ26411.1| hypothetical protein KSE_05680 [Kitasatospora setae KM-6054] Length = 202 Score = 79.5 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 ++ +GQ+FL I ++ E +G G V+E+GAG G L+ + G ++ +E Sbjct: 23 DFRARRDLGQHFLRSPGIATRLLELAGLHAGDAVLEVGAGLGTLSAAVARAG-HRIWAVE 81 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 KD + L + R + D VD ++ + + I + + + + Sbjct: 82 KDPRVAEALCAALEPYGERARPLLSDVRAVDLDRELPVGTVFLSILPFDWPLAFGIAAHV 141 Query: 138 ISA 140 + Sbjct: 142 FGS 144 >gi|72547154|ref|XP_843186.1| rRNA dimethyltransferase [Leishmania major strain Friedlin] gi|323363700|emb|CBZ12705.1| putative rRNA dimethyltransferase [Leishmania major strain Friedlin] Length = 464 Score = 79.5 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 6 KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59 K+ +K + H + K Q F+L+L + ++ ++E+G G G Sbjct: 31 KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 88 Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +LT+ LLT V+ IE D++F P L+ I + N+ + + D LKVD + + P Sbjct: 89 SLTRSLLTRPCVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLKSAFPH 148 Query: 120 RIIANL 125 + AN+ Sbjct: 149 FVKANI 154 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEV 158 A V ++ N ++ + +IANLP+ I T LL + + + + + Q+EV Sbjct: 245 AFDVTNHRWSNGNAKVEVIANLPFEIITELLMRYAADCSQHRGLFAFGRVPIHVFTQREV 304 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--P 216 ERI A S + RLSVL + ++P +V ++ P P+ Sbjct: 305 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHG 364 Query: 217 CCLESLKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264 SL T + A T+ +SL R L L + ++ + +L Sbjct: 365 LSASSLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVQYMLQELRMDGAMTVLDL 418 Query: 265 SIEDFCRIT 273 S+ + R+ Sbjct: 419 SVVEVTRLA 427 >gi|307091896|gb|ADN28283.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 79.1 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88 +D ++ +++A + G G V ++GAG G LT L GAR V+ +E D + L + Sbjct: 1 VDRSLARRMAATVG--AGELVFDLGAGTGALTIPLARAGAR-VVSVEADPTWADRLLGRL 57 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + + +E++ D L V S P R+++N PY I T LL + P+ Sbjct: 58 VGAGLSGNVELVVGDILDVPLP-----SEPYRVVSNPPYGITTALLRRLLERPERGPYRA 112 Query: 149 SL 150 L Sbjct: 113 DL 114 >gi|270593172|ref|ZP_06221463.1| dimethyladenosine transferase [Haemophilus influenzae HK1212] gi|270318418|gb|EFA29543.1| dimethyladenosine transferase [Haemophilus influenzae HK1212] Length = 66 Score = 79.1 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 214 PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272 P P L L ++ +AF +RRKTLR +L L L GI+ N RAENL+I D+ R+ Sbjct: 2 PHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARL 61 Query: 273 TN 274 N Sbjct: 62 AN 63 >gi|307091940|gb|ADN28305.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 79.1 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDI 89 +DLN+L+ I ++ V+E+G G G+LT L L GA V +E D P+ + I Sbjct: 1 IDLNLLELIVRTAELDSSDAVLEVGTGTGSLTSQLALRSGA--VCTVEIDTGLAPVARQI 58 Query: 90 SSQHPNRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 + N + + D L D + + +++ANLPY+I T L+ N Sbjct: 59 VGESHN-VRFVHADCLSKKSLLNPEMLTAWDEVAAKHRCTRRKLVANLPYSIATPLISNL 117 Query: 138 ISADTWPPFWESLT 151 + A + Sbjct: 118 LVAGIPIERMVVMV 131 >gi|552002|gb|AAA26876.1| ermAM protein A [Plasmid pAM-beta-1] Length = 94 Score = 78.3 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNFL +L +I + + TV EIG G G+LT L + +++V IE D F Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64 Query: 84 PILKDISSQHPNRLEIIQDDALKVDFE 110 L + R+ +I D L+ F Sbjct: 65 N-LSSEKLKLNTRVTLIHQDILQFQFP 90 >gi|26224788|gb|AAN76364.1| putative adenine rRNA methylase [Mycobacterium microti] Length = 146 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 25/167 (14%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 G V +IGAG G LT L+ GAR V+ +E + +L++ + ++ DA Sbjct: 1 RPGELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRERFPG----ITVVHADA- 54 Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 P R++AN PY I +RLL ++ ++ + + V + + Sbjct: 55 ----ASIRLPGRPFRVVANPPYGISSRLLRTVVAPNSGLVAADLV-------VQRALVCK 103 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 S + R ++ G + F P P V S V+ Sbjct: 104 FASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVRRRK 142 >gi|117558557|gb|AAI27364.1| tfb2m protein [Xenopus (Silurana) tropicalis] Length = 323 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 52/240 (21%) Query: 29 FLLDLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 F+ D ++ K + +G ++E GPG LTQ LL GAR V+ +E ++ F P Sbjct: 87 FIGDPSMAKTFLKCLQPWDDRGNGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLP 145 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL----------- 133 L+ + + +LE++ D K+D + P+ + L ++ Sbjct: 146 SLQLLENNMDGQLEVVHCDFFKLDPLGHGTMQPPVMYSSVLFNSLCIPEAPWIKDVPFKV 205 Query: 134 ----------------LFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLS 175 ++N ++ + E + +K+ + ++ + +Y LS Sbjct: 206 FGILPQKNESTFLWKQIYNLFERNSIYRYGRIELNVFISEKQYTKLVSQPGDMRNYQALS 265 Query: 176 VLTGWRTKATMM-------------FD---ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219 L ++ F I V P+ + ++ P + L Sbjct: 266 ALFQASCDIQLLHMEPWSSFLTPLRFKGAAIPRSVIVPNDHL--CLVRITPRRDLFTDSL 323 >gi|317505058|ref|ZP_07963005.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] gi|315663836|gb|EFV03556.1| dimethyladenosine transferase [Prevotella salivae DSM 15606] Length = 70 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 35/51 (68%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 + KK++GQ+FL DLNI K+IA++ + I ++EIG G G LTQ L+T Sbjct: 4 VRAKKHLGQHFLTDLNIAKRIADTVDACPAIPILEIGPGMGVLTQYLVTKN 54 >gi|114452124|gb|ABI75036.1| erythromycin resistance protein [uncultured bacterium] Length = 123 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 + +I + +IEIG+G G+ T L V IE D + I K+ ++ N Sbjct: 2 INEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRITKNKLIEYEN 60 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 ++I D L+ F K + +I N+PYNI T ++ + T + + F Sbjct: 61 -FQVINKDILQFKFPK----NKSYKIFGNIPYNISTDIIRKIVFESTATESYLIVEYGFA 115 Query: 156 KEVGER 161 K + Sbjct: 116 KRLLNT 121 >gi|323477450|gb|ADX82688.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus HVE10/4] Length = 198 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 35/210 (16%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 ++EIG G GN+T+ L I IE D++ LK ++ DA + Sbjct: 7 PILEIGCGKGNITKFL-----EPDICIELDEKMIDYLK--------NYNLVIADARYLPI 53 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + +++++LPY I + + D L L+ QK+ ++I Sbjct: 54 LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 +S L + I P F P PKV S + F + I++ Sbjct: 100 --TYISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155 Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257 R KTL+ + L L +N L + Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVREFKP 183 >gi|227830361|ref|YP_002832141.1| dimethyladenosine transferase [Sulfolobus islandicus L.S.2.15] gi|284997867|ref|YP_003419634.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus L.D.8.5] gi|227456809|gb|ACP35496.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus L.S.2.15] gi|284445762|gb|ADB87264.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus L.D.8.5] Length = 198 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 35/210 (16%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 ++EIG G GN+T+ L I IE D++ LK ++ DA + Sbjct: 7 PILEIGCGKGNITKFL-----EPDICIELDEKMTDYLK--------NYNLVIADARYLPI 53 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + +++++LPY I + + D L L+ QK+ ++I Sbjct: 54 LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 +S L + + I P F P PKV S + F + I++ Sbjct: 100 --TYISFLLNYVFDIQIKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155 Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257 R KTL+ + L L +N L + Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVRDFKP 183 >gi|8671851|gb|AAF78414.1|AC009273_20 Identical to dimethyladenosine transferase from Arabidopsis thaliana gb|AF051326. It contains ribosomal RNA adenine dimethylases PF|00398. This gene is cut off Length = 87 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%) Query: 201 VTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253 V + V+ F P P ++ + AF +RK LR+SL+ + E L A Sbjct: 2 VDAAVVTFKLKHPRDYPDVSSTKNFFSLVNSAFNGKRKMLRKSLQHISSSPDIEKALGVA 61 Query: 254 GIETNLRAENLSIEDFCRITNILT 277 G+ R E L+++DF ++ N++ Sbjct: 62 GLPATSRPEELTLDDFVKLHNVIA 85 >gi|226876725|gb|ACO89583.1| Erm(41) [Mycobacterium bolletii] Length = 173 Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 23/190 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ + + + D L + + P R++A+ PY++ + L+ + ++ + Sbjct: 65 RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYHVTSALIRSLLTPE 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + L+ Q+ V H R V W +A + + F P+V Sbjct: 118 S---RLLAADLVLQRGVV--------HKHAKRAPVR-HWTLRAGI--TLPRSAFHHPPQV 163 Query: 202 TSTVIHFIPH 211 S+V+ Sbjct: 164 DSSVLVIRRR 173 >gi|154344495|ref|XP_001568189.1| rRNA dimethyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065526|emb|CAM43293.1| putative rRNA dimethyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 469 Score = 76.8 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%) Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158 A V + N ++ + +IANLP+ I T LL + + + + Q+EV Sbjct: 246 AFDVTNHWWSNGNAKVEVIANLPFAIITELLMRYAVDCAQHRGLFAFGRVPVHIFAQREV 305 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218 ERI A S + RLSVL + ++P +V ++ P P+ Sbjct: 306 AERILAPAGSVEFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHD 365 Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264 L++ L T + A T+ +SL R L L + ++ + +L Sbjct: 366 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVQYMLQELRMDGAMTVLDL 419 Query: 265 SIEDFCRIT 273 S+ + R+ Sbjct: 420 SVVEVTRLA 428 Score = 74.8 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 8/125 (6%) Query: 7 SHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGN 60 + +K + H + K Q F+L+L + ++ ++E+G G G Sbjct: 33 AEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGT 90 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LT+ LLT V+ +E D++F P L+ I + + + + D LKVD + + P Sbjct: 91 LTRSLLTRPCVGVLGVEVDERFNPHLEQIRNYTNQKFQWVTADVLKVDELELLRSAFPHF 150 Query: 121 IIANL 125 + AN+ Sbjct: 151 VKANM 155 >gi|260831178|ref|XP_002610536.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae] gi|229295903|gb|EEN66546.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae] Length = 448 Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 104/324 (32%), Gaps = 59/324 (18%) Query: 6 KSHSLKTILSHYK--IIPKKYMGQN-FLLDLNILKKIAESSGSLDG--ITVIEIGAGPGN 60 S + ++ + K +N ++LD + + + G L + E+ GPG Sbjct: 94 PLPSTEELVRKHGCLRRAFKSRIKNKYILDPALAAVVVDHLGDLSENKQWIFELNPGPGV 153 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 +T+ LL GA +++++E D+ F P ++ + + + D ++D I P Sbjct: 154 VTRELLAAGASRILILENDRVFLPYSMALAKHVRDIVHVKYADFFRIDPMGDGVIKQPAI 213 Query: 121 IIANLPYNIGTR-------------------------LLFNWISADTWPPFWE-SLTLLF 154 L I L + + + + L L Sbjct: 214 SSVELFNKIQPAHWKEEVVVRVVGMLSQEKEKTHLRHLCYRILERSSLFEYGRMELNLFI 273 Query: 155 QKEVGERITAQKNSPH--YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS--------- 203 ++V ITA Y S+L ++ P+ F +V Sbjct: 274 TEKVYNMITAPPGVDLVIYESTSILCQACFDIQLLLK-EPNSRFLPVQVKGQTTYKHKAN 332 Query: 204 ---------TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247 ++ P P + ++ K R L ++ G Sbjct: 333 ADRFVNDHMCLVRLTPKAALFDQGLTPQNGSQFIFLVRQLMAKPRAKLTDRMEIWVPGSL 392 Query: 248 NLLHQAGIETNLRAENLSIEDFCR 271 N+L G+ ++RA +LS F + Sbjct: 393 NILSDLGLRPDMRAGDLSPAQFMK 416 >gi|197112113|gb|ACH43059.1| ribosome methyltransferase [Mycobacterium abscessus] Length = 173 Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 23/190 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ + I + D L + + P R++A+ PY + + L+ + ++ + Sbjct: 65 RARHLRSRFAEED--VRIAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + L+ Q+ + + +++ W +A + + F P+V Sbjct: 118 S---RLLAADLVLQRGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQV 163 Query: 202 TSTVIHFIPH 211 S+V+ Sbjct: 164 DSSVLVIRRR 173 >gi|167947511|ref|ZP_02534585.1| dimethyladenosine transferase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 74 Score = 76.4 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 206 IHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 + P P + ++ +AF +RRKTLR SL+ + AG++ +R E Sbjct: 1 VRLEPFSEPPLAIEDQPLFAQLVAQAFSQRRKTLRNSLRNWLTAEQIEAAGVDPTIRPEQ 60 Query: 264 LSI 266 LS+ Sbjct: 61 LSL 63 >gi|226876711|gb|ACO89576.1| Erm(41) [Mycobacterium abscessus] Length = 173 Score = 76.4 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 81/190 (42%), Gaps = 23/190 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ + + + D L + + P R++A+ PY + + L+ + ++ + Sbjct: 65 RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + L+ Q+ + + +++ W +A + + F P+V Sbjct: 118 S---RLLAADLVLQRGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQV 163 Query: 202 TSTVIHFIPH 211 S+V+ Sbjct: 164 DSSVLVIRRR 173 >gi|226876713|gb|ACO89577.1| Erm(41) [Mycobacterium abscessus] Length = 173 Score = 76.4 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 78/182 (42%), Gaps = 23/182 (12%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 L D + +I SG G V+++GAG G LT L+ GAR V+ +E L+ Sbjct: 15 LTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSR 72 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149 ++ + + + D L + + P R++A+ PY + + L+ + ++ ++ + Sbjct: 73 FAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPES---RLLA 122 Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 L+ Q+ + + +++ W +A + + F P+V S+V+ Sbjct: 123 ADLVLQRGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQVDSSVLVIR 171 Query: 210 PH 211 Sbjct: 172 RR 173 >gi|115949552|ref|XP_001179159.1| PREDICTED: similar to transcription factor B1, mitochondrial, partial [Strongylocentrotus purpuratus] Length = 86 Score = 76.4 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 45/77 (58%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 KI +G+L G V E+G GPG +T+ ++ G + ++VIEKD +F P L+ ++ R+ Sbjct: 1 KIVRQAGNLQGAHVCEVGPGPGGITRSIINQGVQDLLVIEKDTRFIPSLEMLTEATEGRV 60 Query: 98 EIIQDDALKVDFEKFFN 114 + DD L+V+ F Sbjct: 61 RVACDDILRVNLADAFP 77 >gi|169629383|ref|YP_001703032.1| methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169241350|emb|CAM62378.1| Probable methyltransferase [Mycobacterium abscessus] gi|196127896|gb|ACG70212.1| Erm(41) [Mycobacterium abscessus] gi|196127900|gb|ACG70215.1| Erm(41) [Mycobacterium abscessus] gi|197112122|gb|ACH43065.1| ribosome methyltransferase [Mycobacterium abscessus] gi|226876709|gb|ACO89575.1| Erm(41) [Mycobacterium abscessus ATCC 19977] Length = 173 Score = 76.0 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 23/190 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ + I + D L + + P R++A+ PY + + L+ + ++ + Sbjct: 65 RARHLRSRFAEED--VRIAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + L+ Q+ H R V W +A + + F P+V Sbjct: 118 S---RLLAADLVLQRGAV--------HKHAKRAPVR-HWTLRAGI--TLPRSAFHHPPQV 163 Query: 202 TSTVIHFIPH 211 S+V+ Sbjct: 164 DSSVLVIRRR 173 >gi|307091926|gb|ADN28298.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 75.6 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ I+ ++ V+E+G G G+LT L A +V+ IE D+ F P+ + Sbjct: 1 IDLNLIDLISRTAEPSKADAVLEVGTGTGSLTARLAAE-AGQVVTIEIDRTFQPVAQQTV 59 Query: 91 SQHPNRLEIIQDDAL----KVDFEKFFNISS--------PIRIIANLPYNIGTRLLFNWI 138 N + + D L +++ E +++ANLPY I T L+ N + Sbjct: 60 GPREN-MTYLLGDCLAKKSELNPEMLATWDEAAAKPGITTRKLVANLPYVIATPLISNLL 118 Query: 139 SADTWPPFWESLTLLF 154 ++ E + + Sbjct: 119 CSEIP---IERMVFMV 131 >gi|227827664|ref|YP_002829444.1| dimethyladenosine transferase [Sulfolobus islandicus M.14.25] gi|229584868|ref|YP_002843370.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.27] gi|238619835|ref|YP_002914661.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.4] gi|227459460|gb|ACP38146.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus M.14.25] gi|228019918|gb|ACP55325.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus M.16.27] gi|238380905|gb|ACR41993.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus M.16.4] gi|323474722|gb|ADX85328.1| rRNA adenine methylase transferase [Sulfolobus islandicus REY15A] Length = 198 Score = 75.6 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 35/210 (16%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 ++EIG G GN+T+ L I IE D++ LKD ++ DA + Sbjct: 7 PILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKD--------YNLVIADARYLPI 53 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + +++++LPY I + + D L L+ QK+ ++I Sbjct: 54 LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 +S L + I P F P PKV S + F + I++ Sbjct: 100 --TYISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155 Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257 R KTL+ + L L +N L + Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVREFKP 183 >gi|197112119|gb|ACH43063.1| ribosome methyltransferase [Mycobacterium abscessus] Length = 173 Score = 75.6 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 23/190 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ + + + D L + + P R++A+ PY + + L+ + ++ + Sbjct: 65 RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + L+ Q+ + + H+ R T+ F P+V Sbjct: 118 S---RLLAADLVLQRGAVHKHAKRAPVRHWT-------LRAGITL----PRSAFHHPPQV 163 Query: 202 TSTVIHFIPH 211 S+V+ Sbjct: 164 DSSVLVIRRR 173 >gi|197112116|gb|ACH43061.1| ribosome methyltransferase [Mycobacterium abscessus] Length = 173 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 23/190 (12%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64 Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ ++ + + + D L + + P R++A+ PY + + L+ + ++ Sbjct: 65 RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPQ 117 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + + L+ Q+ H R V W +A + + F P+V Sbjct: 118 S---RLLAADLVLQRGAV--------HKHAKRAPVR-HWTLRAGI--TLPRSAFHHPPQV 163 Query: 202 TSTVIHFIPH 211 S+V+ Sbjct: 164 DSSVLVIRRR 173 >gi|229579179|ref|YP_002837577.1| dimethyladenosine transferase [Sulfolobus islandicus Y.G.57.14] gi|229582069|ref|YP_002840468.1| dimethyladenosine transferase [Sulfolobus islandicus Y.N.15.51] gi|228009893|gb|ACP45655.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus Y.G.57.14] gi|228012785|gb|ACP48546.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus Y.N.15.51] Length = 198 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 35/210 (16%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 ++EIG G GN+T+ L I IE D++ LK ++ DA + Sbjct: 7 PILEIGCGKGNITKFL-----EPDICIELDEKMTDYLK--------NYNLVIADARYLPI 53 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169 + +++++LPY I + + D L L+ QK+ ++I Sbjct: 54 LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99 Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229 +S L + I P F P PKV S + F + I++ Sbjct: 100 --TYISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155 Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257 R KTL+ + L L +N L + Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVREFKP 183 >gi|307091982|gb|ADN28326.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 14/133 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ + S+ V+EIG G G+LT L L A V+ +E D F + K+ Sbjct: 1 IDLNLVDFVVRSAELDRSDLVLEIGTGTGSLTAHLARL-AGSVLSVEIDPSFHQLAKETI 59 Query: 91 SQHPNRLEIIQDDALKVDFE----------KFFNISSP--IRIIANLPYNIGTRLLFNWI 138 + + + +I D L+ + + P ++++ANLPY + T ++ N + Sbjct: 60 GETSH-VRLIHADVLENKNHLNPEVLTALREMMDTYQPQRLKLVANLPYAVATPVIANLL 118 Query: 139 SADTWPPFWESLT 151 D + Sbjct: 119 MTDLDIERMVVMV 131 >gi|226876715|gb|ACO89578.1| Erm(41) [Mycobacterium abscessus] Length = 173 Score = 74.8 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 22/176 (12%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 +I SG G V+++GAG G LT L+ GAR V+ +E L+ ++ Sbjct: 20 AARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSRFAEED- 77 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 + + + D L + + P R++A+ PY + + L+ + ++ ++ + L+ Q Sbjct: 78 -VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPES---RLLAADLVLQ 128 Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 + + + +++ W +A + + F P+V S+V+ Sbjct: 129 RGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQVDSSVLVIRRR 173 >gi|229820415|ref|YP_002881941.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae DSM 12333] gi|229566328|gb|ACQ80179.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae DSM 12333] Length = 196 Score = 74.8 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 24/173 (13%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LE 98 + +G G TV+++GAG G LT L+ GAR VI +E + ++ + + R + Sbjct: 24 VDRAGVEHGDTVLDLGAGAGALTGPLVDRGAR-VIALE---RHAGRVQRLRERFDGRSVS 79 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 +++ D + P R++AN P+++ ++ + + A L + + Sbjct: 80 VVEADI-----RDLRLPARPFRVVANPPFHLARPIVADLLGARLLVRADLVLRHDTARNL 134 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 I F PSP V + V+ Sbjct: 135 ARAHADDPRWV--------------VETTLAIPRTAFEPSPSVDALVLTLRRR 173 >gi|307091936|gb|ADN28303.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 74.5 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 8/111 (7%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEI 99 ++ G V+++GAG G LT L GAR V+ +E D + L ++ +E+ Sbjct: 10 AATVHAGELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVEL 68 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + D L + S P R+++N P+ + T LL + P+ L Sbjct: 69 VVGDIL-----ELSLPSEPYRVVSNPPFGVTTALLRRLLEPPERGPYRADL 114 >gi|207108392|ref|ZP_03242554.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_CA4C1] Length = 78 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 ++ KK +GQ+FL D + L +I + L+ + +IEIG G G+LT LL K E Sbjct: 2 VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59 Query: 79 DQQFFPILKDISSQHPNRL 97 D ++ Sbjct: 60 DSNLCEKMRSKLKAQKKAF 78 >gi|196127903|gb|ACG70217.1| Erm(41) [Mycobacterium abscessus] gi|197112128|gb|ACH43069.1| ribosome methyltransferase [Mycobacterium abscessus] Length = 173 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 23/182 (12%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 L D + +I SG G V+++GAG G LT L+ GAR V+ +E L+ Sbjct: 15 LTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSR 72 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149 ++ + + + D L + + P R++A+ PY + + L+ + ++ ++ + Sbjct: 73 FAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPES---RLLA 122 Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 L+ Q+ + + H+ R T+ F P+V S+V+ Sbjct: 123 ADLVLQRGAVHKHAKRAPVRHWT-------LRAGITL----PRSAFHHPPQVDSSVLVIR 171 Query: 210 PH 211 Sbjct: 172 RR 173 >gi|315425087|dbj|BAJ46759.1| dimethyladenosine transferase [Candidatus Caldiarchaeum subterraneum] gi|315428047|dbj|BAJ49635.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum subterraneum] Length = 242 Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 25/221 (11%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D ++ + ++ V+++GAG G L ARKV +E+D + L Sbjct: 3 QHFLVDRAVVMHLVVAAELGSEDVVLDVGAGTGVL-AFEAAKFARKVYAVERDPILYKTL 61 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + + ++ N +E ++ + L++ + +I+AN P+++ L+ + Sbjct: 62 SEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSLLEPLIIRHLRNPV---- 110 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 +++LL K + I + + T + V P + + Sbjct: 111 --TMSLLTPKHFADSILTPE-----TAIGFKTHLSYAVSEKAVYDGSVCEPPYIGKLSHV 163 Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 P + + +R +R SL+ + + Sbjct: 164 LLKPVQRTALQDAMVMFLL------QRGSKVRNSLRNVLWK 198 >gi|293333490|ref|NP_001168088.1| hypothetical protein LOC100381822 [Zea mays] gi|223945939|gb|ACN27053.1| unknown [Zea mays] Length = 170 Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNS 168 EK+ ++ +NLP+N+ T ++ + + + L+ Q E R+ A S Sbjct: 3 EKYGATKKLAKVASNLPFNVSTEVVKLLL---PMGDVFSVVVLMLQDETAVRLADASIQS 59 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKI 225 P Y ++V + ++ F + FFP PKV VI F P +S + Sbjct: 60 PEYRSINVFVDFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSM 119 Query: 226 T 226 Sbjct: 120 V 120 >gi|307091866|gb|ADN28268.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 73.7 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 17/136 (12%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN+L I ++G VIE+G+G G LT A V+ +E D F+ + ++ Sbjct: 1 IDLNLLDVIINAAGLSKDDLVIEVGSGTGGLTAR-HVEEAGAVLSVEIDPAFYQLTQETI 59 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSP------------IRIIANLPYNIGTRLLFNWI 138 + R+ +I D L+ + + P ++++ANLPY + T ++ N++ Sbjct: 60 RE-SERVVLINADVLETKNKLNPEVLEPLARLRESSGLKRLKLVANLPYAVATPVISNFL 118 Query: 139 SADTWPPFWESLTLLF 154 D ++ + ++ Sbjct: 119 LTDLP---FDRMVVMV 131 >gi|315426853|dbj|BAJ48474.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum subterraneum] Length = 248 Score = 73.7 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 25/221 (11%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q+FL+D ++ + ++ V+++GAG G L ARKV +E+D + L Sbjct: 9 QHFLVDRAVVMHLVVAAELGSEDVVLDVGAGTGVL-AFEAAKFARKVYAVERDPILYKTL 67 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + + ++ N +E ++ + L++ + +I+AN P+++ L+ + Sbjct: 68 SEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSLLEPLIIRHLRNPV---- 116 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 +++LL K + I + + T + V P + + Sbjct: 117 --TMSLLTPKHFADSILTPE-----TAIGFKTHLSYAVSEKAVYDGSVCEPPYIGKLSHV 169 Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 P + + +R +R SL+ + + Sbjct: 170 LLKPVQRTALQDAMVMFLL------QRGSKVRNSLRNVLWK 204 >gi|307091918|gb|ADN28294.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 73.3 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ I DG +IE+GAG G LT L LG R + +E D + L+ ++ Sbjct: 2 DRRVINTIVAVVARTDG-PIIEVGAGDGALTLALQKLG-RPLTAVEIDARRAACLEKRTA 59 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 I+ D L + + I+ NLP+++ T +L + W Sbjct: 60 PSS---RIVDADFLHYQLPR-----TRHIIVGNLPFHLTTAMLRRILHGPGW 103 >gi|328699806|ref|XP_003241051.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Acyrthosiphon pisum] Length = 352 Score = 73.3 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 193 HVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---- 247 F P P V V+ P PI + ++K+ + F R+K + ++ L + Sbjct: 216 RAFIPKPNVDVGVVRLTPLKKPIIDLPFDIIEKVIRSVFNFRQKHCIRGVETLFPKPVRE 275 Query: 248 ----NLLHQAGIETNLRAENLSIEDFCRITNIL 276 LL A IE + R L++ +F RI+ Sbjct: 276 QLASELLTAAAIEPSTRPFQLTVSEFGRISEAY 308 >gi|189462315|ref|ZP_03011100.1| hypothetical protein BACCOP_03001 [Bacteroides coprocola DSM 17136] gi|189430969|gb|EDU99953.1| hypothetical protein BACCOP_03001 [Bacteroides coprocola DSM 17136] Length = 200 Score = 73.3 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 77/198 (38%), Gaps = 24/198 (12%) Query: 82 FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 L+ + S N ++++ D KF P ++++N+PY I + + F + + Sbjct: 1 MVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMFE 53 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 + F +++ Q E +++ ++ Y +V +++++ P FFP P V Sbjct: 54 SLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTV 109 Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLHQ 252 S +++ + K AF KT L+ ++ ++ + Sbjct: 110 KSALLNIKRKQ----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISEK 165 Query: 253 AGIETNLRAENLSIEDFC 270 G+ N + LS + Sbjct: 166 FGLNLNAQIVCLSPSQWV 183 >gi|307091878|gb|ADN28274.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 72.9 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 14/133 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ I ++ V+E+G G G+LT + A ++ +E D+ F P+ +++ Sbjct: 1 IDLNLIDLIGRTAELSKADAVLEVGTGTGSLTAR-MASEAGMIVTVEIDRSFAPVAQEVI 59 Query: 91 SQHPNRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 + N + + D L D +++ANLPY I T L+ N + Sbjct: 60 GRRGN-VRHVFGDCLAKKSELNPSMLAAWDEAAKLPGIKHRKLVANLPYVIATPLISNLL 118 Query: 139 SADTWPPFWESLT 151 +D + Sbjct: 119 CSDIPIERMVVMV 131 >gi|307091912|gb|ADN28291.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 72.9 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D ++ + E DG ++E+GAG G LT L LG R + IE D + L + Sbjct: 1 HDRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLGKRT 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 S ++ D L+ + +P I+ NLP+++ T +L + W Sbjct: 59 SAST---RVVDADFLQYRLPR-----APHVIVGNLPFHLTTAMLRRILHGPAW 103 >gi|307091874|gb|ADN28272.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 72.5 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 10/122 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88 +D + +++ E+ G G V+++GAG G LT L GAR V+ +E D + L + Sbjct: 1 VDRFLARRMVETVG--AGELVLDLGAGTGALTIPLAQAGAR-VVAVEADPVWAERLFGQL 57 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + + +E++ D L+V S P R+++N PY I T LL + P+ Sbjct: 58 VGAGLSGMVELVVGDMLEVPLP-----SEPYRVVSNPPYGITTALLRRLLELPERGPYRA 112 Query: 149 SL 150 L Sbjct: 113 DL 114 >gi|307568921|emb|CBX23401.1| ErmF protein [Bacteroides fragilis] gi|307568923|emb|CBX23402.1| ErmF protein [Bacteroides fragilis] Length = 191 Score = 72.5 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 77/201 (38%), Gaps = 24/201 (11%) Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D L+ + S N ++++ D KF P ++++N+PY I + + F + Sbjct: 1 DTALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKIL 53 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ F +++ Q E +++ ++ Y +V +++++ P F P Sbjct: 54 MFESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPP 109 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENL 249 P V S +++ + K AF KT L+ ++ ++ Sbjct: 110 PTVKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSI 165 Query: 250 LHQAGIETNLRAENLSIEDFC 270 + G+ N + LS + Sbjct: 166 SEKFGLNLNAQIVCLSPSQWL 186 >gi|213620904|ref|ZP_03373687.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 53 Score = 72.1 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 RRKT+R SL L L + GI+ +RAEN+S+ +C++ N L++N + Sbjct: 1 RRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 50 >gi|195054200|ref|XP_001994014.1| GH22567 [Drosophila grimshawi] gi|193895884|gb|EDV94750.1| GH22567 [Drosophila grimshawi] Length = 473 Score = 71.4 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 53/268 (19%) Query: 32 DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPI 85 + I +I TV+EI GPG+ T+ LL + R++I+IE+ + F P Sbjct: 64 NTQIADEINAHLQPHLQHTKCDTVLEINPGPGHFTRHLLDRESQFRRLILIEQMEHFMPR 123 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN-----WISA 140 L+++ + +P+R+++ Q D + + F + ++ L ++ R A Sbjct: 124 LQELHALYPDRVKVRQGDFIGIWKLAFMDKMDSGTRLSELLSDVPQRAFNEDVNMLVFGA 183 Query: 141 DTWPPFWESLT--LLFQKEVG-----ERITAQK-------------NSPHYGRLSVLTGW 180 PF++ L L+FQ + E I A Y SVL Sbjct: 184 VGSYPFFKHLINSLIFQTSIFNLGRCEMILALPPPIFTHLSCSNEIGYLIYRSASVLFQI 243 Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNPIPC----C 218 + + + F P+ KV S ++ F+P N Sbjct: 244 LFEHQFIALVPRESFLPAQADHNVSKGSKLGKVKSINPEYLYLVKFVPRRNLHEICPIQD 303 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGG 246 L +L ++ F RR + +L++ Sbjct: 304 LPALWFFIKQNFVSRRNRIIPNLEKWVP 331 >gi|70944826|ref|XP_742302.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi] gi|56521203|emb|CAH74779.1| dimethyladenosine transferase, putative [Plasmodium chabaudi chabaudi] Length = 149 Score = 71.4 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 9/114 (7%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 DG +IE+G G G L++ L + + IE D + I+ + I DD L Sbjct: 44 NDGKGIIELGCGLGQLSKYLFK-KYKNMTAIEIDSRALAIISRTMPG----FDFIHDDVL 98 Query: 106 KVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 ++++++ N ++ + +I NLP+ I +++LF + + + E + Q EV Sbjct: 99 QINYKELSINKNTKLSVIGNLPFYITSQILFCLL---DFYKYIEQAVVTIQYEV 149 >gi|307091954|gb|ADN28312.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091968|gb|ADN28319.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091970|gb|ADN28320.1| putative rRNA methyltransferase [uncultured bacterium] Length = 116 Score = 71.4 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEI 99 ++ G V+++GAG G LT L GAR V+ +E D + L ++ +E+ Sbjct: 10 AATVHAGELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVEL 68 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + D L + S P R+++N P+ + T L+ + P+ L Sbjct: 69 VVRDIL-----ELSLPSEPYRVVSNPPFGVTTALMRRLLEPSERGPYRADL 114 >gi|149003645|ref|ZP_01828510.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] gi|147758377|gb|EDK65377.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69] Length = 73 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%) Query: 223 KKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRIT 273 K+++ +F RRKTL +L G+ L QAG+ ++R E LS+ +F + Sbjct: 6 FKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLA 65 Query: 274 NILT 277 + L Sbjct: 66 DALK 69 >gi|195394850|ref|XP_002056052.1| GJ10435 [Drosophila virilis] gi|194142761|gb|EDW59164.1| GJ10435 [Drosophila virilis] Length = 471 Score = 70.6 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 92/268 (34%), Gaps = 53/268 (19%) Query: 32 DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPI 85 + I ++I + TV+E+ GPG T+ LL RK+I+IE + F P Sbjct: 63 NAQIAQQINDCLEPHLGQTKCDTVLELNPGPGYFTKHLLDRETQFRKIILIESMEHFMPR 122 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNI------------ 129 L+++ + +P+R+++ D + + F + + ++++ P Sbjct: 123 LQELHALYPDRVKVRHGDFIALWKLAFMDKMDSGTRLVDLLSDAPQRAFNEDANMLVFGA 182 Query: 130 --GTRLLFNWISA-------DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 + I++ W L L + + + Y SVL Sbjct: 183 VGSYPFFKHLINSLIFQTSLYNWGRCEMILALPPPIYIHLTCSNEIGYLIYRSASVLFQI 242 Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNP----IPCC 218 + + + F P KV S ++ F+P N Sbjct: 243 LFEYRFIAKLPRESFLPVQTDYNISKGSKLAKVRSINPEYLYLVKFVPRRNLHEICPVQD 302 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGG 246 L +L ++ F RR + +L++ Sbjct: 303 LPALWYFIKQNFVSRRNRIIPNLEKWVP 330 >gi|118412484|gb|ABK81675.1| ribosomal methylase [Streptococcus uberis] Length = 140 Score = 70.6 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 15/152 (9%) Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 G+LT L + +++V IE D F L + R+ +I D L+ F Sbjct: 1 GHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQR 54 Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 +I+ N+PY++ T+++ + + + F K + + L +L Sbjct: 55 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HRTLGLLL 105 Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 + + + F P PKV S +I Sbjct: 106 HTQVSIQQLLKLPAECFHPKPKVNSVLIKLTR 137 >gi|313621076|gb|EFR92165.1| dimethyladenosine transferase [Listeria innocua FSL S4-378] Length = 81 Score = 70.2 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 9/70 (12%) Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIED 268 E ++T+ +F +RRKTL +L L+ GI+ R E L I + Sbjct: 7 DEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKEELVEGLNAIGIDLIRRGETLDIPE 66 Query: 269 FCRITNILTD 278 F +++N L D Sbjct: 67 FAKLSNFLAD 76 >gi|307091872|gb|ADN28271.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 69.5 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 14/133 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ I ++ V+E+G G G+LT L+ A +++ IE D F P+ + + Sbjct: 1 IDLNLIDLIGTTAELTSADAVLEVGTGTGSLTARLVKE-AGQIVSIEIDTAFAPVARQVV 59 Query: 91 SQHPNRLEIIQDDA-----------LKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138 + N ++ +Q D LK + +++ANLPY I L+ N + Sbjct: 60 GEREN-VKYLQGDCLAKKSELNPAMLKAWDAAARKPGITTRKLVANLPYVIAMPLISNLL 118 Query: 139 SADTWPPFWESLT 151 +D + Sbjct: 119 CSDIPIERMVVMV 131 >gi|301300206|ref|ZP_07206418.1| dimethyladenosine transferase domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852147|gb|EFK79819.1| dimethyladenosine transferase domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 136 Score = 69.5 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 +++ D + VIEIG G LT+ L A +V+ E D + PIL D N + ++ Sbjct: 2 DTAEIDDQVNVIEIGPDIGALTEFLTERAA-EVMAFEIDYRLVPILADTLRDFDN-VIVV 59 Query: 101 QDDALKVD 108 +D LKVD Sbjct: 60 NEDILKVD 67 >gi|326392388|ref|ZP_08213803.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter ethanolicus JW 200] gi|325991572|gb|EGD50149.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter ethanolicus JW 200] Length = 59 Score = 69.5 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 25/44 (56%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 GQNF+ D NIL KI +SG V+EIG G G LT+ L Sbjct: 12 WGQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKR 55 >gi|189459634|ref|ZP_03008419.1| hypothetical protein BACCOP_00260 [Bacteroides coprocola DSM 17136] gi|189433656|gb|EDV02641.1| hypothetical protein BACCOP_00260 [Bacteroides coprocola DSM 17136] Length = 204 Score = 69.1 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 72/186 (38%), Gaps = 23/186 (12%) Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 P +++ D KF P ++++N+PY I + + F + ++ F +++ Sbjct: 16 PEMFQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMFESLGNFL-GGSIV 68 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 Q E +++ ++ Y +V +++++ P FFP P V S +++ Sbjct: 69 LQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTVKSALLNIKRKQ- 124 Query: 214 PIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLHQAGIETNLRAENL 264 + K AF KT L+ ++ ++ + G+ N + L Sbjct: 125 ---LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISEKFGLNLNAQIVCL 181 Query: 265 SIEDFC 270 S + Sbjct: 182 SPSQWV 187 >gi|307091922|gb|ADN28296.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 68.7 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D ++ I E DG + E+GAG G LT L LG R + IE D + L + Sbjct: 1 HDRGVIDTIVEIVAHTDG-PIFEVGAGDGELTAPLQRLG-RPLTAIEIDARRAARLDKRT 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + ++ D L ++ I+ NLP+++ T +L + W Sbjct: 59 AVTT---RVVDADFLHYRLPLAEHV-----IVGNLPFHLTTAMLRRILHGPGW 103 >gi|114452118|gb|ABI75033.1| erythromycin resistance protein [uncultured bacterium] Length = 121 Score = 68.7 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 6/113 (5%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 TV EIG G G+LT L + +++V IE D F L + R+ +I D L+ Sbjct: 1 DTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ 58 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 F +I N+PYN+ T+++ + + + F K + Sbjct: 59 ----FPNKQRYKIFGNIPYNLSTKIIKKVVFESHASDIYLIVEEGFYKRTLDI 107 >gi|331087256|ref|ZP_08336326.1| hypothetical protein HMPREF0987_02629 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408942|gb|EGG88403.1| hypothetical protein HMPREF0987_02629 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 94 Score = 68.3 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%) Query: 206 IHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLK--------RLGGENLLHQAGI 255 I H P + + +I + +F +RRKTL LK R G E + + G Sbjct: 2 IRLECHEEPPVQVKDEKLMFRIIRASFNQRRKTLANGLKNSPEISLSREGIEQAIAELGK 61 Query: 256 ETNLRAENLSIEDFCRITNIL 276 ++R E L++E+F ++NI+ Sbjct: 62 GASVRGEALNLEEFATLSNIV 82 >gi|307091994|gb|ADN28332.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 68.3 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D I+ + + D ++E+GAG G +T LL R V +E D L+ Sbjct: 1 VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALLQAD-RAVTAVELDSNRVAALRRRH 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 R ++ D L + E S +++N+P+ I T LL + + W Sbjct: 59 P----RAMVVAGDMLDIRLE------SNHHVVSNVPFGITTPLLRHLLPQQHW 101 >gi|114452116|gb|ABI75032.1| erythromycin resistance protein [uncultured bacterium] Length = 121 Score = 68.3 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 6/113 (5%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 TV EIG G G+LT L + +++V IE D F L + R+ +I D L+ Sbjct: 1 DTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ 58 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 F +I+ ++PY++ T+++ + + + F K + Sbjct: 59 ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI 107 >gi|330948591|gb|EGH48851.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 74 Score = 68.3 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 + Q DALK DF +R++ NLPYNI T L+F+ + + + + Q Sbjct: 3 NFNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFMLQ 59 Query: 156 KEVGERITAQKN 167 KEV ER+ A Sbjct: 60 KEVVERMAAGPG 71 >gi|307091986|gb|ADN28328.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 67.9 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D I+ + + D ++E+GAG G +T L G R V +E D L+ Sbjct: 1 VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALFQAG-RAVTAVELDSNRVAALRRRH 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 R ++ D L + E S +++N+P+ I T LL + + W Sbjct: 59 P----RAIVVAGDMLDIRLE------SDHHVVSNVPFGITTPLLRHLLPQQHW 101 >gi|307091888|gb|ADN28279.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 10/111 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +++ I E G ++E+GAG G LT L L IE D + L ++ Sbjct: 3 RDVIDTIVEIVADTHG-PIVEVGAGDGALTLPLQKL-MHPQTAIEIDSRRAARLGKRTAP 60 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++ D L+ + + I+ NLP+++ T +L + W Sbjct: 61 ST---RVVDADFLQYRLPR-----TQHVIVGNLPFHLTTAMLRRILHGPGW 103 >gi|27436726|gb|AAN86836.1| adenine rRNA methylase [Mycobacterium smegmatis str. MC2 155] Length = 100 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 10/101 (9%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 H+ + +GQNFL D ++ I E +G +IEIGAG G LT L L AR + Sbjct: 5 HHG---RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTA 59 Query: 76 IEKDQQFFPILKDISSQHPNR-----LEIIQDDALKVDFEK 111 +E D + L +++ E++ D L+ + Sbjct: 60 VEVDARRARRLAQRTARSAPGPASRPTEVVAADFLRYPLPR 100 >gi|326915468|ref|XP_003204039.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like [Meleagris gallopavo] Length = 360 Score = 67.1 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 87/276 (31%), Gaps = 58/276 (21%) Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 PG LT+ LL G R V+ +E F L+ + + +L++I D ++D + Sbjct: 68 PGVLTRTLLNAGVR-VVALESHPAFLSKLQSLENSLDGQLKVIYGDFFRLDPLVTGAVKP 126 Query: 118 PIRIIANLPYNIG---------------------------TRLLFNWISADTWPPF--WE 148 P L +G RLLF + + E Sbjct: 127 PAVCSDKLFEAMGIAAVPWRADVPVKIFGIFPQRKERNTLWRLLFILYECSSIYRYGRVE 186 Query: 149 SLTLLFQKEVGERITAQKNS-PHYGRLSVLTGWRTKATMMFD----------------IS 191 + +KE + +TA+ Y LSVL ++ I Sbjct: 187 LNIFISEKEY-KVLTAKPGELRIYQALSVLWQAGCDIQLLHMEPWSSFLTNLKNGRLAIP 245 Query: 192 PHVFFPSPKVTSTVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTLRQSLKRL-- 244 P+ + ++ P N P + + ++ K R L L Sbjct: 246 KSTRLPNDHL--CLVRLTPQQNLFTGGLKPANSATFIFMVKQCLTKPRSKLIDRLNSWSL 303 Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 + LL I + N+ ED+ R+ L ++ Sbjct: 304 DNADKLLKALEIPNYIETGNVYPEDYKRLFCALQNS 339 >gi|224130160|ref|XP_002320767.1| predicted protein [Populus trichocarpa] gi|222861540|gb|EEE99082.1| predicted protein [Populus trichocarpa] Length = 87 Score = 67.1 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 201 VTSTVIHFIPHLN---PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGG----ENLLHQ 252 V + V+ F P+ +S + AF +RK LR+SL+ + E L Sbjct: 2 VDAAVVRFKLKQAVDYPVVSSTKSFFSMVVNSAFNGKRKMLRKSLQHICTPVEIEEALQN 61 Query: 253 AGIETNLRAENLSIEDFCRITNIL 276 G R E L+++DF + N + Sbjct: 62 VGCLATSRPEELTLDDFVNLHNSI 85 >gi|167947426|ref|ZP_02534500.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 86 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + V+E D+ L D + L I DALK DF + P+R++ NLPY Sbjct: 3 RRCGTLQVVELDRDLIGPLADSCATL-GELTIHSADALKFDFTALASPERPLRVVGNLPY 61 Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQ 155 NI T LLF+ +S + + Q Sbjct: 62 NISTPLLFHLLSQAAQ---ISDMHFMLQ 86 >gi|119597557|gb|EAW77151.1| transcription factor B2, mitochondrial, isoform CRA_c [Homo sapiens] Length = 295 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 54/241 (22%) Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 ++E GPG LTQ LL GA KV+ +E D+ F P L+ + + P ++ L Sbjct: 94 RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLEKLMAD-PGNPDLYH--VL 149 Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 V + ++ I+++ P+ + ++ P E L L QK ++ Sbjct: 150 SV----IWQLACEIKVLHMEPW--SSFDIYTRKGPLENPKRRELLDQLQQKLYLIQM--- 200 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI 225 I F N P + Sbjct: 201 ------------------------IPRQNLF--------------TKNLTPMNYNIFFHL 222 Query: 226 TQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 + FG+R T+ +SL L ++L Q G + + + N+ +DF + + ++D Sbjct: 223 LKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDC 282 Query: 283 A 283 A Sbjct: 283 A 283 >gi|307091898|gb|ADN28284.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D ++ + E DG ++E+GAG G LT L LG R + IE D + L + Sbjct: 1 HDRGVVDTLVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 S ++ D L+ +P I+ NLPY++ T +L + W Sbjct: 59 SASS---RVVDADFLQYRLP-----HAPHVIVGNLPYHLTTAMLRRLLHGPGW 103 >gi|118135711|gb|ABK62706.1| ErmB [Lactobacillus salivarius] Length = 136 Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 14/146 (9%) Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L +++V IE D F L + R+ +I D L+ F +I+ N+ Sbjct: 3 LAKISKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNI 57 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY++ T+++ + + + F K + + L +L + Sbjct: 58 PYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQ 108 Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH 211 + + F P PKV S +I H Sbjct: 109 QLLKLPAECFHPKPKVNSVLIKLTRH 134 >gi|195449501|ref|XP_002072099.1| GK22500 [Drosophila willistoni] gi|194168184|gb|EDW83085.1| GK22500 [Drosophila willistoni] Length = 439 Score = 65.6 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 53/256 (20%) Query: 32 DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPI 85 + I K+I T++E+ G G+ T+ LL RK+I++E + F P Sbjct: 45 NAEIAKEIDSCIDPHVRESKCDTIMELNPGVGHFTRHLLDREKQFRKIILLESMEHFMPR 104 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR------------L 133 L ++ + +P R+++ D + + + + +A L ++ R Sbjct: 105 LHELHALYPERVKVHHADFVTLWKLAYMDKMDNGSRVAELLNDVPQRAFGEDANMLVFGA 164 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQK-------------NSPHYGRLSVLTGW 180 + ++ T L+ E I A Y SVL Sbjct: 165 VGSYTFFKHLINSIIFQTSLYNLGRCEMILAVPPPIYIHLTCQNDIGYLLYRSTSVLFQI 224 Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNP----IPCC 218 + + + F P KV S ++ F+P N P Sbjct: 225 LFEHRFIAKVPREHFLPHQADYNVGKSSKLGKVRSINPEYLYLVKFVPRRNLHELCPPDD 284 Query: 219 LESLKKITQEAFGKRR 234 L +L ++ F RR Sbjct: 285 LTALWFFIKQNFVSRR 300 >gi|307091892|gb|ADN28281.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 65.2 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 13/109 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 + ++ + S DG ++EIGAG G LT L +LG R+++ ++ D + L+ Sbjct: 5 TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + + + DAL++ ++ N+P++I T +L ++ W Sbjct: 61 --VVVRRADALQIRL-------DRPVVVGNIPFHITTPILRRLLATGEW 100 >gi|307091886|gb|ADN28278.1| putative rRNA methyltransferase [uncultured bacterium] gi|307091904|gb|ADN28287.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 65.2 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 13/109 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 + ++ + S DG ++EIGAG G LT L +LG R+++ ++ D + L+ Sbjct: 5 TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + + + DAL++ ++ N+P++I T +L ++ W Sbjct: 61 --VVVRRADALQIRL-------DRPVVVGNIPFHITTPILRRLLATGEW 100 >gi|307091924|gb|ADN28297.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 65.2 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 + ++ + E DG + E+GAG G LT L LG R + IE D L + Sbjct: 1 HNRGVIDTMVEIVARTDG-PIFEVGAGDGALTVPLQRLG-RPLTAIEIDAHRAARLDKRT 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + ++ D L ++ I+ NLP+++ T +L + W Sbjct: 59 AVTT---RVVDADFLHYRLPLAEHV-----IVGNLPFHLTTAMLRRILHGPGW 103 >gi|307091894|gb|ADN28282.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 65.2 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 13/109 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 + ++ + S DG ++EIGAG G LT L +LG R+++ ++ D + L+ Sbjct: 5 TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + + + DAL++ ++ N+P++I T +L ++ W Sbjct: 61 --VVVRRADALQIRL-------DRPVVVGNIPFHITTPILRRLLTTGEW 100 >gi|307091884|gb|ADN28277.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 13/109 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 + ++ + S DG T +EIGAG G LT L +LG R+++ ++ D + L+ Sbjct: 5 TIDRMVDLVRSTDGPT-LEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +++ + DAL++ ++ N+P++I T +L ++ W Sbjct: 61 --VDVRRADALQIRL-------DRPVVVGNIPFHITTPVLRRLLATGEW 100 >gi|307091916|gb|ADN28293.1| putative rRNA methyltransferase [uncultured bacterium] Length = 131 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +DLN++ I ++ V+ +G G G+LT + A V+ IE D F P+ +++ Sbjct: 1 IDLNLIDLIGRTAELSKEDAVLGVGTGTGSLTARMAKE-AGMVVTIEIDLTFQPVAQEVV 59 Query: 91 SQHPNRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 N + + D L D +++ANLPY I T L+ N + Sbjct: 60 GPRGN-VRYARGDCLAKKGELNPKTLEAWDEAARLPGIKKRKLVANLPYVIATPLISNLL 118 >gi|195109498|ref|XP_001999321.1| GI23134 [Drosophila mojavensis] gi|193915915|gb|EDW14782.1| GI23134 [Drosophila mojavensis] Length = 471 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 101/286 (35%), Gaps = 56/286 (19%) Query: 32 DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPI 85 + I ++I + TV+E+ GPG+ T+ LL RK+I++E + F P Sbjct: 63 NAQIAEQINDYLEPHLRQTKCDTVMELNPGPGHFTRHLLDRETQFRKIILMESMEYFMPR 122 Query: 86 LKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYN------------- 128 L+++ + +P R+++ D + + +K + + + +++++P Sbjct: 123 LQELHALYPERVKVRYGDFIALWKLAYMDKIDSGTRLLDMLSDVPRTSFNDDINMLVFGA 182 Query: 129 IGTRLLFN-----WISADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 +G+ F I + L + + + + Y SVL Sbjct: 183 VGSYAFFKHLINSLIFQISLYNLGRCEMILAMPPPIYIHLTCSNKIGYLIYRSASVLFQI 242 Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNP----IPCC 218 + + + F P KV S ++ F+P N Sbjct: 243 LFEHRFIAKVPRETFLPVQADYNLSRSSKLAKVKSINPEYLYLVKFVPRRNLHEICPVQD 302 Query: 219 LESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGIETNLRA 261 L +L ++ F RR + +L++ G L+ +R Sbjct: 303 LPALWFFIKQNFVSRRNRIIPNLEKWVPGCGPRLIINQNAPERVRP 348 >gi|307091930|gb|ADN28300.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D ++ + E DG ++E+GAG G LT L LG R + IE D + L + Sbjct: 1 HDRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 S ++ D L+ + +P I+ NLP+++ T +L + W Sbjct: 59 SAST---RVVDADFLQYRLPR-----APHVIVGNLPFHLTTAMLRRILHGPAW 103 >gi|298246976|ref|ZP_06970781.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] gi|297549635|gb|EFH83501.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-----VIVIEKDQQFFPILKDIS 90 L++I E +G G+ V+EIG GPG+ T +L A + V +E + L+ Sbjct: 81 LEQIVERAGVTPGMRVLEIGPGPGHFTTLLARRVAEQGKQGSVTCVELQPEMIARLRQQL 140 Query: 91 SQHP-NRLEIIQDDALKVD 108 + N +EI+Q DA ++ Sbjct: 141 HREQVNNVEIVQGDAQQLP 159 >gi|307092050|gb|ADN28360.1| putative rRNA methyltransferase [uncultured bacterium] Length = 117 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 VIEIG G G L++ + G + +IE + +L+D + +I D Sbjct: 15 LDSSDDVIEIGPGLGILSEAIFRHGVHSLTMIELVMRLATVLQDRMRDRRG-VNVINADF 73 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 L + P++++ANLP+N+ + +L + + Sbjct: 74 LDLRG---LPGDGPLKVVANLPFNVASAILERLCADHARITLMVLM 116 >gi|326436861|gb|EGD82431.1| hypothetical protein PTSG_03076 [Salpingoeca sp. ATCC 50818] Length = 593 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 94/290 (32%), Gaps = 44/290 (15%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQ---QFFP 84 + + I A LD + ++E T+ LL GA+ V ++ D+ P Sbjct: 293 ITNYGIADAFASLIPGLDKLHIVESNPYTMLFTRALLNHGAKSVTIVTNTGDRQNKHLHP 352 Query: 85 ILKDISSQH-PNRLEIIQDDALKVDFEK-------FFNISS--------PIRIIANLPYN 128 + R++++ D K+D F+ + Sbjct: 353 QVHAFQEALGEKRVKLVHGDMQKLDLPDGCPPSEVLFDDFPSRQWLVRSSFALAGQTNAV 412 Query: 129 IGTRLLFNWI---SADTWPPFWES--LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 G+ +FN + + + P W + + + + I + RL VL Sbjct: 413 SGSVFIFNLLYKVAMRSGPFHWGRTAMYFTLPRYLTQHIFSTG-----SRLGVLAQVLCH 467 Query: 184 ATMMFDISPHVFFPSPKVTST-------VIHFIPHLNPIPCCLESL---KKITQEAFGKR 233 + +S +F P K T + IP +P+ E+ + + Sbjct: 468 VNELAAVSRDLFSPRLKCTEGPGAITVHFVELIPRYSPLIPNYETFVVLDFLLRHL-TMT 526 Query: 234 RKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 KT+ ++++ LG + L I + + + + + L +D Sbjct: 527 AKTIGKAMRGLGPQFTPLFAMTNINPETPLKKMKVTQYVDLAVALHQWED 576 >gi|156337250|ref|XP_001619836.1| hypothetical protein NEMVEDRAFT_v1g150110 [Nematostella vectensis] gi|156203780|gb|EDO27736.1| predicted protein [Nematostella vectensis] Length = 102 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%) Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252 P V S+V+ P P P + + + AF ++ KTL +L + Sbjct: 1 PPNVESSVVRIEPKNPPPPVNFKEWDGLVRIAFVRKNKTLSACFNSRPVLEMLEK 55 >gi|18542232|gb|AAL75489.1| ErmC [Staphylococcus aureus RN4220] Length = 127 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 + + EIG+G G+ T L+ V IE D + ++ H N +++ D L+ Sbjct: 1 EHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQ 58 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 F K + +I N+PYNI T ++ + + + F K + Sbjct: 59 FKFPK----NQSYKIYGNIPYNISTDIIRKIVFDSIANEIYLIVEYGFAKRLLNT 109 >gi|18542240|gb|AAL75493.1| ErmC [Staphylococcus aureus] gi|18542242|gb|AAL75494.1| ErmC [Staphylococcus aureus] gi|18542244|gb|AAL75495.1| ErmC [Staphylococcus aureus] gi|18542246|gb|AAL75496.1| ErmC [Staphylococcus aureus] Length = 127 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 + + EIG+G G+ T L+ V IE D + ++ H N +++ D L+ Sbjct: 1 EHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQ 58 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F K + +I N+PYNI T ++ + + + + L+ + +R+ K Sbjct: 59 FKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDSIADEIYLIVEYGFAKRLLNTK 110 Query: 167 NS 168 S Sbjct: 111 RS 112 >gi|18542234|gb|AAL75490.1| ErmC [Staphylococcus aureus] gi|18542236|gb|AAL75491.1| ErmC [Staphylococcus aureus] gi|18542238|gb|AAL75492.1| ErmC [Staphylococcus aureus] Length = 127 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 + + EIG+G G+ T L+ V IE D + ++ H N +++ D L+ Sbjct: 1 EHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQ 58 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 F K + +I N+PYNI T ++ + + + + L+ + +R+ K Sbjct: 59 FKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDSIADEIYLIVEYGFAKRLLNTK 110 Query: 167 NS 168 S Sbjct: 111 RS 112 >gi|312794464|ref|YP_004027387.1| methyltransferase type 11 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181604|gb|ADQ41774.1| Methyltransferase type 11 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 199 Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFP 84 Q+ D LKKI + + +G TV+++G G G L LL + K++ ++ ++ Sbjct: 19 QH---DPQKLKKIIDLTDIKEGDTVLDVGCGTGVLEGYLLKKVGKSGKIVAVDISEKMIE 75 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115 K N + + DAL +DFE++F++ Sbjct: 76 KAKQKFKDASN-ITFLCADALCLDFEEYFDV 105 >gi|6683461|dbj|BAA89222.1| adenine methylase [Streptococcus pneumoniae] Length = 131 Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 19/150 (12%) Query: 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157 +I D L+ F +I+ N+PY++ T+++ + + + F K Sbjct: 1 TLIHQDILQFQ----FPNKQRYKIVGNIPYHLRTQIIKKVVFESRASDIYLIVEEGFYKR 56 Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217 + + L +L + + + F P PKV S +I H +P Sbjct: 57 TLDI---------HRTLGLLLQTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPD 107 Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247 L F K + + ++L + Sbjct: 108 KYWKL----YTYFV--SKWVNREYRQLFTK 131 >gi|307568926|emb|CBX23404.1| ErmF protein [Bacteroides fragilis] Length = 68 Score = 63.3 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 P ++ GQ+F +D ++K + + TV++IGAG G LT LL + A V+ IE D Sbjct: 7 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65 Query: 81 QFF 83 Sbjct: 66 ALV 68 >gi|194742245|ref|XP_001953616.1| GF17852 [Drosophila ananassae] gi|190626653|gb|EDV42177.1| GF17852 [Drosophila ananassae] Length = 454 Score = 63.3 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 82/247 (33%), Gaps = 49/247 (19%) Query: 49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 TV+E+ G G+ T+ LL R++I++E F P L+++ S +P R+++ Q D + Sbjct: 71 DTVMELNPGTGHFTRHLLDRETQFRRIILLESMDHFMPRLQELHSLYPERVKVRQGDFVN 130 Query: 107 VDF-------------EKFFNISSPIRIIANLP---------YNIGTRLLFNWISADTWP 144 + N ++ Y+ L+ + I + Sbjct: 131 LWKLVYMDKMDGGSRVMDLLNDVPRKAFNDDVNMLVFGAVGSYHFYKHLINSLIFQTSLY 190 Query: 145 PFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198 L + + T + Y S+L + + + F P Sbjct: 191 NLGRCEMILAMPPPIYIHLTCTNEIGYLIYRSTSILFQILFEHQFIAKVPREDFLPMQSN 250 Query: 199 ---------PKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQ 239 KV S ++ F P N P L +L ++ F RR + Sbjct: 251 YTLTKGSKLGKVRSINPEYLYLVKFTPRRNLHELVQPQDLPALWFFIKQNFVSRRNRIIP 310 Query: 240 SLKRLGG 246 +L++ Sbjct: 311 NLEKWVP 317 >gi|307091932|gb|ADN28301.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 63.3 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 13/109 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 + ++ + S DG ++EIGAG G LT L +LG R+++ + D + L+ Sbjct: 5 TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAADIDGRHVDRLRRRLPS-- 60 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + + + DAL++ ++ N+P++I +L ++ W Sbjct: 61 --VVVRRADALQIR-------PDRPVVVGNIPFHITAPILRRLLATGEW 100 >gi|294918056|ref|XP_002778474.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] gi|239886888|gb|EER10269.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC 50983] Length = 100 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 G + L + +I+ +I ++ TV+E+G G GN++ L L A +V+ +E ++ Sbjct: 6 GGHLLQNEDIITRILLAARIRPSDTVLEMGPGTGNMSVKLSEL-ANRVVAMEVNEGLAKE 64 Query: 86 LKDISS-QHPNRLEIIQDDALKVDFEKF 112 ++ + + + +E++ D ++ +F Sbjct: 65 VERRAEMKGASNMEVVTGDFKRLALPRF 92 >gi|312878182|ref|ZP_07738111.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A] gi|311795046|gb|EFR11446.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A] Length = 199 Score = 62.9 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFP 84 Q+ D LKKI + + +G TV+++G G G L LL + K++ ++ ++ Sbjct: 19 QH---DPQKLKKIIDMTDIKEGDTVLDVGCGTGVLEGYLLKKVGKSGKIVAVDISEKMIE 75 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115 K N + + DAL +DFE++F++ Sbjct: 76 KAKQKFKDASN-ITFLCADALCLDFEEYFDV 105 >gi|307091928|gb|ADN28299.1| putative rRNA methyltransferase [uncultured bacterium] Length = 107 Score = 62.5 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 13/109 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 ++ + S DG ++EIGAG G LT L +LG R+++ ++ D + L+ Sbjct: 5 TTDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + + + DAL++ ++ N+P++I T L ++ W Sbjct: 61 --VVVRRADALQIRL-------DRPVVVGNIPFHITTPTLRRLLATGEW 100 >gi|167523120|ref|XP_001745897.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775698|gb|EDQ89321.1| predicted protein [Monosiga brevicollis MX1] Length = 1879 Score = 62.1 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 28/196 (14%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-------VIEKDQQ 81 F++D + IA +G V E AG G LTQ L GA V + D Sbjct: 1592 FVMDPRLADLIAAHCDV-EGRHVYEQAAGAGLLTQAFLQHGAAFVTGCNSSSSRLNIDPD 1650 Query: 82 FFPILKDISSQH-----------------PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 F L + +H P ++ +D+ L + N Sbjct: 1651 CFERLTNAFPKHLSVINAHLSVLGYHQTTPEAVKEHEDNVLAARQKDLPRTLFLFLPTHN 1710 Query: 125 LPYNIGTRLLFNWISADTWPPFWESL--TLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 I T +L+ ++ D+ + +S L ++ + + A + R++ LT Sbjct: 1711 GLGYI-TNVLYQLVAFDSPFSYRQSCKFYCLLNRKWAQTLVADPGQSRFTRITALTKTLC 1769 Query: 183 KATMMFDISPHVFFPS 198 + +F P Sbjct: 1770 DVHELRVFPRQLFSPP 1785 >gi|229822130|ref|YP_002883656.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333] gi|229568043|gb|ACQ81894.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333] Length = 266 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 + ++ E G G EIG GPG T LL LGA ++ +E D + L++ P Sbjct: 33 VYDELVERCGLRPGTATFEIGPGPGTATGRLLELGADPLVAVEPDARLATFLRERFPDAP 92 Query: 95 NRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 L+++ E F++ LP + + W Sbjct: 93 --LDVVAASFEDAPLELGAFDLGVSFTAFHWLPEEAALAEVARLLRPGGW 140 >gi|120403309|ref|YP_953138.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|119956127|gb|ABM13132.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1] Length = 187 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V+E+G G G T +L T AR + +E D +L D + P+ ++I+ DA + Sbjct: 32 GDDVLEVGPGYGATTDVLCTEVAR-LTAVEIDPDLAAMLIDRFADQPS-VQIVNGDAAAL 89 Query: 108 DFEK 111 D+ Sbjct: 90 DYPD 93 >gi|18542261|gb|AAL75504.1| ErmB [Streptococcus pyogenes] Length = 130 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 14/143 (9%) Query: 66 LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 L +++V IE D F L + R+ +I D L+ F +I+ ++ Sbjct: 2 LAKISKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSI 56 Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 PY++ T+++ + + + F K + + L +L + Sbjct: 57 PYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQ 107 Query: 186 MMFDISPHVFFPSPKVTSTVIHF 208 + + F P PKV S +I Sbjct: 108 QLLKLPAECFHPKPKVNSVLIKL 130 >gi|307091900|gb|ADN28285.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D ++ + E DG ++E+GAG G LT L LG R + IE D + L + Sbjct: 1 HDRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 S ++ D L+ + +P I+ NLP+++ T +L + W Sbjct: 59 SAST---RVVDTDYLQYRLPR-----APHVIVGNLPFHLTTAMLRRILHGPAW 103 >gi|307091996|gb|ADN28333.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D I+ + + D ++E+GAG G +T LL G R V +E D L Sbjct: 1 VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALLQAG-RVVTAVELDAYRVAAL---W 55 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +HP R ++ D L + + S +++N+P+ I T+L + + W Sbjct: 56 CRHP-RAIVVAGDMLDI------RLKSNHHVLSNVPFGITTQLPRHLLPQQHW 101 >gi|319411697|emb|CBQ73741.1| conserved hypothetical protein [Sporisorium reilianum] Length = 594 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 107/356 (30%), Gaps = 107/356 (30%) Query: 29 FLLDLNILKKIAESSGSLDGI------TVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQ 81 F+ + + +K I + G D TVIE GPG T++L KVI +E + Sbjct: 216 FVSNRSTIKDIISALGITDPERNGEKVTVIEGYPGPGTFATELLQMEQVEKVIALEDTPR 275 Query: 82 FFPILKDI------------------------------------SSQHPNRLEIIQDDAL 105 + L+++ + NR+ + Sbjct: 276 YVQKLEELQTLLESKQPGQGARLDILESSAYLWDTYNQLVSSGKLAHLNNRVTTSDGQMV 335 Query: 106 KVDFEKFFNIS---------SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 F SP+ A LP + LF I W Q Sbjct: 336 DFTSNSFVPPDHSDASWQKLSPMIFFAQLPNTVYGEQLFAQIITAIASRIWLFRQGRVQL 395 Query: 157 EV------GERITAQKNSP-HYGRLSVLTGWRTKAT---MMFDISPHV--FFPS-----P 199 +R A+ G+L +++PH FFP P Sbjct: 396 GFVCGESLAKRCLAEAGDKISRGKLGTTVQCLADVEVHKYAHELAPHTHHFFPPTMSVGP 455 Query: 200 KVTST--------------------VIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTL 237 +VT + ++ P P+ +E+ + IT+ F R K + Sbjct: 456 RVTVSGTSLIPNSNPSTGLTRTGMVMLTVTPKKKPLVKANEIEAFEFITRNLFILRNKPV 515 Query: 238 RQSLKRL--GGENLLH-----QAG-----IETNLRAEN----LSIEDFCRITNILT 277 ++L + GG+N+L QA ++ + E L+ + + + Sbjct: 516 GEALTHVAPGGQNVLKMTSPAQADKGLIRVDEVILPEQIVSDLTNVQWACLARMFE 571 >gi|316931685|ref|YP_004106667.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris DX-1] gi|315599399|gb|ADU41934.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris DX-1] Length = 201 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 13/164 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A VIE+G G G +T L+ G ++++++E D F +L++ Q Sbjct: 44 LARTMARYVDIDSNGPVIELGPGTGAITSALVEHGVDQKRLVLLEFDPGFCALLRERFPQ 103 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 +++Q DA ++ + + P + + + +L E Sbjct: 104 A----KVVQGDAYRLRDSLWDALDVPATAVVSGLPLVTKPMLTRMKLIRDAFNLLEPGAP 159 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 Q A + ++ P + Sbjct: 160 FVQ---FTYSVAPPIPKSLS----GVATEASERIWMNVPPARVW 196 >gi|307091934|gb|ADN28302.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D ++ + E DG ++E+GAG G LT L LG R + IE D + L + Sbjct: 1 HDRGVIDTVVEIVARTDG-PILEVGAGNGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 S ++ D L+ + I+ NLP+++ T +L + +W Sbjct: 59 SAST---RVVDADLLQYRLP-----HTSHVIVGNLPFHLTTAMLRRMLHGPSW 103 >gi|307091978|gb|ADN28324.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 12/113 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D I+ + + D ++E+GAG G +T LL G R V +E D L+ Sbjct: 1 VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALLQAG-RVVTAVELDAYRVAALR--- 55 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +HP R ++ D + S +++N+P+ I T LL + + W Sbjct: 56 CRHP-RAIVVAGD------MPDIRLKSNHHVLSNVPFGIMTPLLRHLLPQQHW 101 >gi|114452114|gb|ABI75031.1| erythromycin resistance protein [uncultured bacterium] Length = 110 Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG+G G+ T+ L+ + +R V IE D+ + + + N +++I D LK +F K Sbjct: 1 EIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNFPK- 57 Query: 113 FNISSPIRIIANLPYNIGTRLLFNW 137 + +I N+P+NI T ++ Sbjct: 58 ---NKDYKIFGNIPFNISTDIVKKI 79 >gi|255020712|ref|ZP_05292772.1| Methyltransferase type 12 [Acidithiobacillus caldus ATCC 51756] gi|254969828|gb|EET27330.1| Methyltransferase type 12 [Acidithiobacillus caldus ATCC 51756] Length = 193 Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 20/140 (14%) Query: 29 FLLDLNIL-----------KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIV 75 FL D + +K+A +G V+E+G G G +T+ LL G +++ Sbjct: 17 FLRDPRAIGAVFPSSPYLARKMAALVPEGEG-LVLELGPGLGPVTRALLERGIAPADLVL 75 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E+ + L+ +E+I+ DA ++ + + + ++ + L+ Sbjct: 76 VERSPRMVAHLRQRFPG----VEVIEGDAARLGDYLHQRGPARAIVSSLPLRSMPSSLVQ 131 Query: 136 NWISADTWPPFWESLTLLFQ 155 + D +P + T+ Q Sbjct: 132 QIL--DQFPAIGRAGTVFIQ 149 >gi|148560713|ref|YP_001259926.1| phospholipid N-methyltransferase [Brucella ovis ATCC 25840] gi|294851353|ref|ZP_06792026.1| pmtA [Brucella sp. NVSL 07-0026] gi|148371970|gb|ABQ61949.1| phospholipid N-methyltransferase [Brucella ovis ATCC 25840] gi|294819942|gb|EFG36941.1| pmtA [Brucella sp. NVSL 07-0026] Length = 199 Score = 60.6 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G + + IE F L + Sbjct: 40 TARRMASVIDVNSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNETFPD 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192 >gi|90421855|ref|YP_530225.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris BisB18] gi|90103869|gb|ABD85906.1| Ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris BisB18] Length = 200 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A VIE+G G G +T L+ G ++++++E + F +L++ Q Sbjct: 43 LARTMANYVEIDSDDPVIELGPGTGAITHALIEHGVDQKRLVLVEYNPSFCALLRERYPQ 102 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 ++Q DA ++ + + +P + + + +L Sbjct: 103 A----TVVQGDAYRLRDSLWKILKAPAAAVVSGLPLVTKPMLTRL 143 >gi|217979083|ref|YP_002363230.1| Methyltransferase type 12 [Methylocella silvestris BL2] gi|217504459|gb|ACK51868.1| Methyltransferase type 12 [Methylocella silvestris BL2] Length = 284 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A VIE+G G G +T+ LL G ++ +IE D F L+ Sbjct: 51 LARMMARYVDPHQTGPVIELGPGTGAITEALLARGVAPDRLYLIEFDPNFCRHLRRRFPG 110 Query: 93 HPNRLEIIQDDALKV 107 + +I+ DA + Sbjct: 111 ----VHVIEGDAYRF 121 >gi|307091960|gb|ADN28315.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 +D I+ + + D ++E+GAG +T LL G R V +E D L+ Sbjct: 1 VDPRIIVAMVNAL-PSDSAPILELGAGDAAVTWALLQAG-RVVTAVELDAYRVAALR--- 55 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 +HP R ++ D L + + S +++N+P+ I T LL + + W Sbjct: 56 CRHP-RAIVVAGDMLDI------RLKSNHHVLSNVPFGITTPLLRHLLPQQHW 101 >gi|116563468|gb|ABJ99756.1| ErmC [Staphylococcus epidermidis] Length = 95 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 EIG+G G+ T L+ V IE D + ++ H N +++ D L+ F K Sbjct: 1 EIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQFKFPK- 57 Query: 113 FNISSPIRIIANLPYNIGTRLLFNWI 138 + +I N+PYNI T ++ + Sbjct: 58 ---NQSYKIFGNIPYNISTDIIRKIV 80 >gi|225626499|ref|ZP_03784538.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella ceti str. Cudo] gi|225618156|gb|EEH15199.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella ceti str. Cudo] Length = 204 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A + V+E+G G G +T+ +L G + + IE F L Sbjct: 45 TARRMASVIDVNSDLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 104 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 105 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 160 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 161 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 197 >gi|161620039|ref|YP_001593926.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella canis ATCC 23365] gi|163844143|ref|YP_001628548.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella suis ATCC 23445] gi|254700760|ref|ZP_05162588.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella suis bv. 5 str. 513] gi|254705132|ref|ZP_05166960.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella suis bv. 3 str. 686] gi|256060092|ref|ZP_05450274.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella neotomae 5K33] gi|256370525|ref|YP_003108036.1| phospholipid N-methyltransferase [Brucella microti CCM 4915] gi|260567401|ref|ZP_05837871.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261324067|ref|ZP_05963264.1| phospholipid N-methyltransferase [Brucella neotomae 5K33] gi|261751268|ref|ZP_05994977.1| phospholipid N-methyltransferase [Brucella suis bv. 5 str. 513] gi|261755833|ref|ZP_05999542.1| phospholipid N-methyltransferase [Brucella suis bv. 3 str. 686] gi|306842760|ref|ZP_07475402.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella sp. BO2] gi|306843547|ref|ZP_07476148.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella sp. BO1] gi|161336850|gb|ABX63155.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella canis ATCC 23365] gi|163674866|gb|ABY38977.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella suis ATCC 23445] gi|256000688|gb|ACU49087.1| phospholipid N-methyltransferase [Brucella microti CCM 4915] gi|260156919|gb|EEW91999.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261300047|gb|EEY03544.1| phospholipid N-methyltransferase [Brucella neotomae 5K33] gi|261741021|gb|EEY28947.1| phospholipid N-methyltransferase [Brucella suis bv. 5 str. 513] gi|261745586|gb|EEY33512.1| phospholipid N-methyltransferase [Brucella suis bv. 3 str. 686] gi|306276238|gb|EFM57938.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella sp. BO1] gi|306287104|gb|EFM58609.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella sp. BO2] Length = 199 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G + + IE F L Sbjct: 40 TARRMASVIDVNSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192 >gi|254709105|ref|ZP_05170916.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella pinnipedialis B2/94] gi|256030631|ref|ZP_05444245.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella pinnipedialis M292/94/1] gi|256158628|ref|ZP_05456515.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella ceti M490/95/1] gi|256254037|ref|ZP_05459573.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella ceti B1/94] gi|260169535|ref|ZP_05756346.1| phospholipid N-methyltransferase [Brucella sp. F5/99] gi|261221176|ref|ZP_05935457.1| phospholipid N-methyltransferase [Brucella ceti B1/94] gi|261316604|ref|ZP_05955801.1| phospholipid N-methyltransferase [Brucella pinnipedialis B2/94] gi|261759061|ref|ZP_06002770.1| SAM binding domain-containing protein [Brucella sp. F5/99] gi|265987676|ref|ZP_06100233.1| phospholipid N-methyltransferase [Brucella pinnipedialis M292/94/1] gi|265997136|ref|ZP_06109693.1| phospholipid N-methyltransferase [Brucella ceti M490/95/1] gi|260919760|gb|EEX86413.1| phospholipid N-methyltransferase [Brucella ceti B1/94] gi|261295827|gb|EEX99323.1| phospholipid N-methyltransferase [Brucella pinnipedialis B2/94] gi|261739045|gb|EEY27041.1| SAM binding domain-containing protein [Brucella sp. F5/99] gi|262551604|gb|EEZ07594.1| phospholipid N-methyltransferase [Brucella ceti M490/95/1] gi|264659873|gb|EEZ30134.1| phospholipid N-methyltransferase [Brucella pinnipedialis M292/94/1] Length = 199 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A + V+E+G G G +T+ +L G + + IE F L Sbjct: 40 TARRMASVIDVNSDLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192 >gi|145595515|ref|YP_001159812.1| methyltransferase type 11 [Salinispora tropica CNB-440] gi|145304852|gb|ABP55434.1| Methyltransferase type 11 [Salinispora tropica CNB-440] Length = 273 Score = 59.4 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 39/182 (21%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 G G V+EIG G G T+ L+ GA V+ +E L+ + H + +I+ D Sbjct: 33 GLGPGARVLEIGPGTGQATRPLVAAGA-SVLAVELGGHLAARLRTDLAGHD--VTVIEGD 89 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 + V + + + A F+W+ D L Sbjct: 90 FVTV---PLPDGDVDLAVCAT---------TFHWLDPDAAVRRLARLV------------ 125 Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK 223 + G L+V I P +V ++P P L ++ Sbjct: 126 -RPG----GGLAVWWTVFGDPDR---IPPW----RAEVDRLYRRWLPGEKVRPGDLPAVM 173 Query: 224 KI 225 ++ Sbjct: 174 RV 175 >gi|10439137|dbj|BAB15441.1| unnamed protein product [Homo sapiens] Length = 230 Score = 59.1 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 31/197 (15%) Query: 118 PIRIIANLPYNIGTRLLFNW------ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 P++++ P G R L+ ++ E + +KE + + N Y Sbjct: 22 PLKVVGMFPSRGGRRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLY 81 Query: 172 GRLSVLTGWRTKATMM-------FDI-----SPHVFFPSPKVTS-----TVIHFIPHLNP 214 LSV+ + ++ FDI + +I IP N Sbjct: 82 HVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNL 141 Query: 215 I-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSI 266 P + + FG+R T+ +SL L ++L Q G + + + N+ Sbjct: 142 FTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHP 201 Query: 267 EDFCRITNILTDNQDIA 283 +DF + + ++D A Sbjct: 202 QDFKTLFETIERSKDCA 218 >gi|17988283|ref|NP_540917.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225853555|ref|YP_002733788.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella melitensis ATCC 23457] gi|256045734|ref|ZP_05448612.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|256112454|ref|ZP_05453375.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|256262960|ref|ZP_05465492.1| SAM binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260563031|ref|ZP_05833517.1| SAM binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265992150|ref|ZP_06104707.1| phospholipid N-methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265993888|ref|ZP_06106445.1| phospholipid N-methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|17984053|gb|AAL53181.1| phosphatidylethanolamine n-methyltransferase / phosphatidyl-n-methylethanolamine n-methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225641920|gb|ACO01834.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella melitensis ATCC 23457] gi|260153047|gb|EEW88139.1| SAM binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262764869|gb|EEZ10790.1| phospholipid N-methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263003216|gb|EEZ15509.1| phospholipid N-methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263092835|gb|EEZ17010.1| SAM binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326410127|gb|ADZ67192.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella melitensis M28] gi|326539846|gb|ADZ88061.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella melitensis M5-90] Length = 199 Score = 59.1 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E G G G +T+ +L G + + IE F L Sbjct: 40 TARRMASVIDVNSGLPVLEFGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192 >gi|254713469|ref|ZP_05175280.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella ceti M644/93/1] gi|254716175|ref|ZP_05177986.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella ceti M13/05/1] gi|261217947|ref|ZP_05932228.1| phospholipid N-methyltransferase [Brucella ceti M13/05/1] gi|261321203|ref|ZP_05960400.1| phospholipid N-methyltransferase [Brucella ceti M644/93/1] gi|260923036|gb|EEX89604.1| phospholipid N-methyltransferase [Brucella ceti M13/05/1] gi|261293893|gb|EEX97389.1| phospholipid N-methyltransferase [Brucella ceti M644/93/1] Length = 199 Score = 59.1 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G + + IE F L Sbjct: 40 TARRMASVIDVNSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEQLNKTFPD 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192 >gi|254718170|ref|ZP_05179981.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella sp. 83/13] gi|265983125|ref|ZP_06095860.1| phospholipid N-methyltransferase [Brucella sp. 83/13] gi|306837685|ref|ZP_07470554.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella sp. NF 2653] gi|264661717|gb|EEZ31978.1| phospholipid N-methyltransferase [Brucella sp. 83/13] gi|306407243|gb|EFM63453.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Brucella sp. NF 2653] Length = 199 Score = 59.1 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A + G+ V+E+G G G +T+ +L G + + IE F L Sbjct: 40 TARRMASVIDANSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192 >gi|307091858|gb|ADN28264.1| putative rRNA methyltransferase [uncultured bacterium] Length = 110 Score = 58.7 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 10/113 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 D ++ + E DG ++EIGAG G LT L LG R + IE D + ++ Sbjct: 1 HDRGVIGTVVEIVARTDG-PILEIGAGDGALTLPLQRLG-RPLTAIEVDARRAAR---LA 55 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 + ++ D L+ + +P I+ NL +++ T +L + W Sbjct: 56 RRTSAATHVVDADFLQYRLPR-----APHVIVGNLLFHLTTAMLRRLLHGPGW 103 >gi|39933412|ref|NP_945688.1| putative phospholipid N-methyltransferase [Rhodopseudomonas palustris CGA009] gi|192288769|ref|YP_001989374.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris TIE-1] gi|39647258|emb|CAE25779.1| putative phospholipid N-methyltransferase [Rhodopseudomonas palustris CGA009] gi|192282518|gb|ACE98898.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris TIE-1] Length = 201 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A VIE+G G G +T L+ G ++++++E D F +L++ Sbjct: 44 LARTMARYVDIQSDGPVIELGPGTGAITNALVEHGVDQKRLVLLEFDPGFCALLRERFPL 103 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 +++Q DA ++ + + P + + + +L Sbjct: 104 A----KVVQGDAYRLRDSLWDALEIPATAVVSGLPLVTKPMLTRM 144 >gi|153008124|ref|YP_001369339.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151560012|gb|ABS13510.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Ochrobactrum anthropi ATCC 49188] Length = 199 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A + G+ V+E+G G G +T+ +L G + + IE Q F L I + Sbjct: 40 TARRMASVIDTGSGLPVLELGPGTGVITKAILKQGVKPADLYSIEYSQDFVDHLNTIFPE 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + IIQ DA +D I N P + +L+ + +S Sbjct: 100 ----VNIIQGDAFDLDSALGEKKDQKFDCIISAVPMLNFPMDKRIQLVESLLSRIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T G +V + ++ P + Sbjct: 156 LMQITYGPL---------PPVPAGRGNYTV--QHYDFV--VRNVPPAQLW 192 >gi|222618431|gb|EEE54563.1| hypothetical protein OsJ_01755 [Oryza sativa Japonica Group] Length = 321 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 59/215 (27%) Query: 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 K GQ+ L + +L I + AR Q Sbjct: 45 KARGQHLLTNPRVLDAIVAHAALRS----------------------ARSTPS----QPL 78 Query: 83 FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142 L ++L + D++ ++ KF +A++PY I + L + Sbjct: 79 AAGL-----GLGHKLTVTTGDSMAIELPKF------DICVASIPYGISSPLTAKLLIGSH 127 Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 + R+ L+ ++ D+S F Sbjct: 128 RFRARFA----------RRLMGTPGHGERNLLATNARLVADVRLLMDVSRPEF------- 170 Query: 203 STVIHFIPHLNPIP-----CCLESLKKITQEAFGK 232 S+++ P L T+ G+ Sbjct: 171 SSLVEIRPKQTRPKEFAAGVELHEWLAFTRACTGQ 205 >gi|158346654|gb|ABW36939.1| rRNA methylase [Neisseria gonorrhoeae] Length = 55 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 QNFL +L +I + + TV EIG G G+LT L Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAK 49 >gi|158346651|gb|ABW36937.1| rRNA methylase [Neisseria gonorrhoeae] Length = 50 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 QNFL +L +I + + TV EIG G G+LT L Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAK 49 >gi|168698912|ref|ZP_02731189.1| hypothetical protein GobsU_05296 [Gemmata obscuriglobus UQM 2246] Length = 286 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 4/138 (2%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90 +I+ ++ + V E G G G + + GA+K + IE D + ++ Sbjct: 137 DDIVDEMMKLGKIGKDDVVYEPGPGDGRMLIAAVKKGAKKGVGIELDPKKAEEARENIKK 196 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + ++ II+ DALK + + + + N ++ +L + A + + Sbjct: 197 AGLEKQITIIEGDALK--DRDYSEATVVLLYMGNEFNDLLRPILDKQLKAGSRIVSHRFV 254 Query: 151 TLLFQKEVGERITAQKNS 168 ++ + + IT Sbjct: 255 IGDWKPDTTKTITGADGD 272 >gi|307091862|gb|ADN28266.1| putative rRNA methyltransferase [uncultured bacterium] Length = 108 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ E G ++E+GAG G LT L LG R + IE D++ L SS Sbjct: 2 DRRVVADTIEIVSRTTG-PIVEVGAGNGALTLPLQRLG-RSLTAIEIDRRRARRLARHSS 59 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143 ++I D L ++ +P ++ NLP+++ ++ + W Sbjct: 60 A-----DVIAADFLHYRLQR-----TPHVVVGNLPFHLTAAMMRRLLHGPGW 101 >gi|5327231|emb|CAB46340.1| adenine methaylase [Staphylococcus aureus] Length = 73 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLC 65 >gi|149482602|ref|XP_001517047.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 465 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 37/194 (19%) Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 +L+++ D LK + F +ANLP+ I + +F + + Sbjct: 149 AGKLQVLVGDVLKTELPFF------DACVANLPFQISSPFVFKLLLHRPF---------- 192 Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK-VTSTVIHFIPHL 212 +TA S + G LT + I P + Sbjct: 193 ------FSLTALSKSDNRGTREALTMCQAPYERPGSIGRSAASLRPSSGNAGRTRLDKRS 246 Query: 213 NPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE----N 263 + + + F ++ KTL + K + LL + N R + Sbjct: 247 RKRSAERVLQPAQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK-----NYRVHCSVND 301 Query: 264 LSIEDFCRITNILT 277 ++I D RI + Sbjct: 302 IAIPDDFRIAEKIQ 315 >gi|92115789|ref|YP_575518.1| ribosomal RNA adenine methylase transferase [Nitrobacter hamburgensis X14] gi|91798683|gb|ABE61058.1| Ribosomal RNA adenine methylase transferase [Nitrobacter hamburgensis X14] Length = 200 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Query: 34 NILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDIS 90 IL + +A+ V+E+G G G +T L+ G +++++IE D F +L+D Sbjct: 41 RILARTMAQYVDVGSTDPVVELGPGTGAITNALIEHGVDQKRLVLIEYDPGFCALLRDRY 100 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 Q ++Q DA + + +S+ I + + +L Sbjct: 101 PQA----TVVQGDAYTLRDSLWNVLSARASAIVSGLPLVTKPMLTRL 143 >gi|119597555|gb|EAW77149.1| transcription factor B2, mitochondrial, isoform CRA_a [Homo sapiens] gi|119597559|gb|EAW77153.1| transcription factor B2, mitochondrial, isoform CRA_a [Homo sapiens] Length = 230 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 31/197 (15%) Query: 118 PIRIIANLPYNIGTRLLFNW------ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 P++++ P R L+ ++ E + +KE + + N Y Sbjct: 22 PLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLY 81 Query: 172 GRLSVLTGWRTKATMM-------FDI-----SPHVFFPSPKVTS-----TVIHFIPHLNP 214 LSV+ + ++ FDI + +I IP N Sbjct: 82 HVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNL 141 Query: 215 I-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSI 266 P + + FG+R T+ +SL L ++L Q G + + + N+ Sbjct: 142 FTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHP 201 Query: 267 EDFCRITNILTDNQDIA 283 +DF + + ++D A Sbjct: 202 QDFKTLFETIERSKDCA 218 >gi|239833174|ref|ZP_04681503.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Ochrobactrum intermedium LMG 3301] gi|239825441|gb|EEQ97009.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Ochrobactrum intermedium LMG 3301] Length = 204 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A + G+ V+E+G G G +T+ +L G + + IE Q F L I + Sbjct: 45 TARRMASVIDTGSGLPVLELGPGTGVITKAILKQGVKPADLYSIEYSQDFVDHLNTIFPE 104 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + IIQ DA +D I N P + +L+ + +S Sbjct: 105 ----VNIIQGDAFDLDSALGEKKDQKFDCIISAVPMLNFPMDRRIQLVESLLSRIPRGRP 160 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T G +V + ++ P + Sbjct: 161 LMQITYGPL---------PPVPAGRGNYTV--QHYDFV--VRNVPPAQLW 197 >gi|85714055|ref|ZP_01045044.1| ribosomal RNA adenine methylase transferase [Nitrobacter sp. Nb-311A] gi|85699181|gb|EAQ37049.1| ribosomal RNA adenine methylase transferase [Nitrobacter sp. Nb-311A] Length = 154 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 6/101 (5%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNR 96 +A+ VIE+G G G +T L+ G ++++++E D F +L+D Q Sbjct: 1 MAQYVDVGSTDPVIELGPGTGAITNALIEHGVDQKRLVLVEYDPGFCALLRDRYPQA--- 57 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 ++Q DA + + +S+ I + + +L Sbjct: 58 -TVVQGDAYTLRDSLWNVLSARASAIVSGLPLVTKPMLTRL 97 >gi|299133267|ref|ZP_07026462.1| ribosomal RNA adenine methylase transferase [Afipia sp. 1NLS2] gi|298593404|gb|EFI53604.1| ribosomal RNA adenine methylase transferase [Afipia sp. 1NLS2] Length = 198 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 16/165 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A VIE+G G G +T L+ G ++++++E + F +L++ Q Sbjct: 42 LARTMASYVDKHSEAPVIELGPGTGAITDALVAHGVEQKRLVLVEFNPGFCALLRERYPQ 101 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT 151 ++Q DA ++D +++ LP + +L + + + Sbjct: 102 A----TVVQGDAYQLDKTLAAIAQPASAVVSGLPL-VTKPMLTRLRLMREAFMKLIPGAP 156 Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + A VLT + ++ P + Sbjct: 157 FV----QFTYSVAPPIPK--SLPGVLTQ--ASERIWMNVPPARVW 193 >gi|195330205|ref|XP_002031795.1| GM23852 [Drosophila sechellia] gi|194120738|gb|EDW42781.1| GM23852 [Drosophila sechellia] Length = 454 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 49/247 (19%) Query: 49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D + Sbjct: 71 DTVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGDFVN 130 Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159 + +K S +++++P T + A PF++ L L+FQ + Sbjct: 131 LWKLVYMDKIDGGSRVADLLSDVPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 190 Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198 E I A Y SVL + + + F P Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQTA 250 Query: 199 ---------PKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQ 239 KV S ++ F P N P L +L ++ + RR + Sbjct: 251 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQPQDLPALWFFIKQNYVSRRNRIIP 310 Query: 240 SLKRLGG 246 +L++ Sbjct: 311 NLEKWVP 317 >gi|1107874|emb|CAA57980.1| rRNA methylase [Staphylococcus haemolyticus] Length = 74 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLC 65 >gi|198450471|ref|XP_001357992.2| GA17767 [Drosophila pseudoobscura pseudoobscura] gi|198131051|gb|EAL27128.2| GA17767 [Drosophila pseudoobscura pseudoobscura] Length = 452 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 105/302 (34%), Gaps = 61/302 (20%) Query: 6 KSHSLKTILSHY-KIIPKKYMG--Q----N-FLLDLNILKKIAESSGS----LDGITVIE 53 S + + +++ Y P+K + Q + ++ + ++I + TV+E Sbjct: 18 SSKAKRELVARYSGEYPEKLLSKKQKTPTHMYVANAKTAQRIGQYLEPHLQQTSCDTVLE 77 Query: 54 IGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 + G G+ T+ LL RK+I++E + F P L ++ + +P R+++ D + + Sbjct: 78 LNPGAGHFTRHLLDRETQFRKIILLESMEYFMPRLHELHTLYPERVKVRHGDLVNLWKLV 137 Query: 112 FFNISSPIRII----ANLPYNIGTRLLFNWI-----SADTWPPFWESLTL---LFQKEVG 159 F + + ++P T + + S + SL L+ Sbjct: 138 FMDKMDNGVRVAELLHDVPQRPFTDDINMLVFGAVGSYAFFKHLINSLVFQTSLYNLGRC 197 Query: 160 ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFP--------- 197 E I A Y +VL + + + F P Sbjct: 198 EMILAMPPPIYIHLTCDNEVGYLIYRSTTVLFQILFEHRFIAKVPREDFLPLQADYKLTK 257 Query: 198 ---SPKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 KV S ++ F+P N P L +L ++ + RR + +L++ Sbjct: 258 SSKLGKVRSVNPEYLYLVKFVPRRNLHELCSPQDLIALWFFIKQNYVSRRNRIIPNLEKW 317 Query: 245 GG 246 Sbjct: 318 VP 319 >gi|165928517|ref|ZP_02224349.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (Highlevel kasugamycin resistance protein KsgA) (Kasugamycindimethyltransferase) [Yersinia pestis biovar Orientalis str. F1991016] gi|165919445|gb|EDR36801.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (Highlevel kasugamycin resistance protein KsgA) (Kasugamycindimethyltransferase) [Yersinia pestis biovar Orientalis str. F1991016] Length = 66 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 8/51 (15%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53 MNN+ H +K GQNFL D ++ I + + G V E Sbjct: 1 MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVGE 43 >gi|302672062|ref|YP_003832022.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316] gi|302396535|gb|ADL35440.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316] Length = 198 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ + I + G L+G V++I G G + L GA+KV ++ Q + Sbjct: 27 DESVTRDIIGNLGQLEGKKVLDIACGTGFMIPYYLEAGAKKVTGVDISAQMLEKARQKFR 86 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151 H ++ I DA + +F++ +++ I P+ L + +S + Sbjct: 87 NHSE-VDFINGDAEQFEFDEKYDVC---VIYNAFPHFPSPETLMHNLSTALVDNGSICIA 142 Query: 152 LLFQKEVGERITAQ 165 +EV + A Sbjct: 143 HGASREVIDGCHAG 156 >gi|157965686|gb|ABW06859.1| Erm(41) methylase [Mycobacterium abscessus] Length = 138 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 22/157 (14%) Query: 55 GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 GAG G LT L+ GAR V+ +E L+ ++ + + + D L + + Sbjct: 4 GAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSRFAEED--VRVAEADLLAFRWPR--- 57 Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 P R++A+ PY + + L+ + ++ ++ + L+ Q+ + + H+ Sbjct: 58 --RPFRVVASPPYQVTSALIRSLLTPES---RLLAADLVLQRGAVHKHAKRAPVRHWT-- 110 Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 R T+ F P+V S+V+ Sbjct: 111 -----LRAGITL----PRSAFHHPPQVDSSVLVIRRR 138 >gi|298249778|ref|ZP_06973582.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] gi|297547782|gb|EFH81649.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-----KVIVIEKDQQFFPILKDISSQH 93 I E +G G+ V+EIG GPG T +L A V +E + +L+ + Sbjct: 64 IVERAGVALGMRVLEIGPGPGLFTTVLARRVAAGKSSGSVTCVEVQSKMIELLRQRLERE 123 Query: 94 P-NRLEIIQDDALKVDFEK-FFNISSPIRIIANLPYNIG 130 +EIIQ D + + F++ + ++ LPY + Sbjct: 124 EVGNVEIIQADGCHMPLPEGSFDMIFLVTVVGELPYPVA 162 >gi|4138445|emb|CAA77018.1| adenine methylase [Staphylococcus aureus] Length = 74 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNF+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC 65 >gi|296333180|ref|ZP_06875633.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675314|ref|YP_003866986.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149378|gb|EFG90274.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413558|gb|ADM38677.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 213 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 I ++ S G V+E G G GNLT LL G + V IE + D S R Sbjct: 35 DDILDAIVSRSGTHVLEFGPGTGNLTAKLLEAG-KSVFGIEPSPAMRKLASDKLS---GR 90 Query: 97 LEIIQDDALKVDFEKFF 113 EI+ D L F Sbjct: 91 AEIVDGDFLTFPEPPFH 107 >gi|75674398|ref|YP_316819.1| ribosomal RNA adenine methylase transferase [Nitrobacter winogradskyi Nb-255] gi|74419268|gb|ABA03467.1| ribosomal RNA adenine methylase transferase [Nitrobacter winogradskyi Nb-255] Length = 200 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A+ VIE+G G G +T L+ G ++++++E D F +L+D Q Sbjct: 43 LARTMAQYVDVASADPVIELGPGTGAITNALIEHGVDPKRLVLVEYDPGFCALLRDRYPQ 102 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 ++Q DA + + +S+ I + + +L Sbjct: 103 A----TVVQGDAYTLRDSLWNVLSARASAIVSGLPLVTKPMLTRL 143 >gi|259120682|gb|ACV91980.1| ErmB [synthetic construct] gi|259120685|gb|ACV91982.1| ErmB [synthetic construct] gi|259120688|gb|ACV91984.1| ErmB [synthetic construct] gi|259120691|gb|ACV91986.1| ErmB [synthetic construct] gi|259120694|gb|ACV91988.1| ErmB [synthetic construct] gi|259120700|gb|ACV91992.1| ErmB [synthetic construct] gi|259120702|gb|ACV91993.1| ErmB [synthetic construct] Length = 47 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 21/42 (50%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 QNFL +L +I + + TV EIG G G+LT L Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKL 47 >gi|218659431|ref|ZP_03515361.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase protein [Rhizobium etli IE4771] Length = 150 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL++ + L K+ + + V+E+G G G T LL++ A VI +E D+ K+ Sbjct: 65 FLMEASPLAKLLQLAAISKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEGLAAEAKE 123 Query: 89 ISSQHPNRLEIIQD 102 + + ++E++ Sbjct: 124 KLAGY-GKVEVVTG 136 >gi|260463409|ref|ZP_05811609.1| ribosomal RNA adenine methylase transferase [Mesorhizobium opportunistum WSM2075] gi|259030734|gb|EEW32010.1| ribosomal RNA adenine methylase transferase [Mesorhizobium opportunistum WSM2075] Length = 200 Score = 56.7 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +K+A G+ V+E+G G G +T+ +L G R + +E F L+ + Sbjct: 42 TARKMASIVNPKSGLPVLEVGPGTGVITRAILAQGVRPENLYAVEYSTDFVRHLRQL--- 98 Query: 93 HPNRLEIIQDDALKVD 108 +P + +I+ DA ++ Sbjct: 99 YPG-VNVIEGDAFNLN 113 >gi|319780467|ref|YP_004139943.1| ribosomal RNA adenine methylase transferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166355|gb|ADV09893.1| ribosomal RNA adenine methylase transferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 201 Score = 56.7 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +K+A G+ V+E+G G G +T+ +L G R + +E F L+ + Sbjct: 42 TARKMASIVNPKSGLPVLEVGPGTGVITRAILAQGVRPENLYAVEYSTDFVRHLRRLYPG 101 Query: 93 HPNRLEIIQDDALKVD 108 + +I+ DA ++ Sbjct: 102 ----VNVIEGDAFNLN 113 >gi|13473984|ref|NP_105552.1| phospholipid N-methyltransferase [Mesorhizobium loti MAFF303099] gi|14024735|dbj|BAB51338.1| phospholipid N-methyltransferase [Mesorhizobium loti MAFF303099] Length = 201 Score = 56.7 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +K+A G+ V+E+G G G +T+ +L G R + +E F L+ + Sbjct: 42 TARKMASIVNPKSGLPVLEVGPGTGVITRAILAQGVRPENLYAVEYSTDFVRHLRQL--- 98 Query: 93 HPNRLEIIQDDALKVD 108 +P + +I+ DA ++ Sbjct: 99 YPG-VNVIEGDAFNLN 113 >gi|218462899|ref|ZP_03502990.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase protein [Rhizobium etli Kim 5] Length = 221 Score = 56.7 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL++ + L K+ + + V+E+G G G T LL++ A VI +E D+ K+ Sbjct: 66 FLMEASPLAKLLQLAAISKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEGLAAEAKE 124 Query: 89 ISSQHPNRLEIIQD 102 + + ++E++ Sbjct: 125 KLAGY-GKVEVVTG 137 >gi|195166002|ref|XP_002023824.1| GL27200 [Drosophila persimilis] gi|194105984|gb|EDW28027.1| GL27200 [Drosophila persimilis] Length = 452 Score = 56.7 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 103/302 (34%), Gaps = 61/302 (20%) Query: 6 KSHSLKTILSHY-KIIPKKYMG--Q----N-FLLDLNILKKIAESSGS----LDGITVIE 53 S + + +++ Y P+K + Q + ++ + ++I + TV+E Sbjct: 18 SSKAKRELVARYSGEYPEKLLSKKQKTPTHMYVANAKTAQRIGQYLEPHLQQTSCDTVLE 77 Query: 54 IGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 + G G+ T+ LL RK+I++E F P L ++ + +P R+++ D + + Sbjct: 78 LNPGAGHFTRHLLDRETQFRKIILLESMDYFMPRLHELHTLYPERVKVRHGDLVNLWKLV 137 Query: 112 FFNISSPIRII----ANLPYNIGTRLLFNWI-----SADTWPPFWESLTL---LFQKEVG 159 F + + ++P T + + S + SL L+ Sbjct: 138 FMDKMDNGVRVAELLHDVPQRPFTDDINMLVFGAVGSYAFFKHLINSLVFQTSLYNLGRC 197 Query: 160 ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFP--------- 197 E I A Y +VL + + + F P Sbjct: 198 EMILAMPPPIYIHLTCDNEVGYLIYRSTTVLFQILFEHRFIAKVPREDFLPLQADYKLTK 257 Query: 198 ---SPKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRL 244 KV S ++ F+P N P L +L ++ RR + +L++ Sbjct: 258 SSKLGKVRSVNPEYLYLVKFVPRRNLHELCSPQDLIALWFFIKQNMVSRRNRIIPNLEKW 317 Query: 245 GG 246 Sbjct: 318 VP 319 >gi|255527133|ref|ZP_05394020.1| Methyltransferase type 12 [Clostridium carboxidivorans P7] gi|296186578|ref|ZP_06854981.1| ribosomal RNA adenine dimethylase family protein [Clostridium carboxidivorans P7] gi|255509184|gb|EET85537.1| Methyltransferase type 12 [Clostridium carboxidivorans P7] gi|296049025|gb|EFG88456.1| ribosomal RNA adenine dimethylase family protein [Clostridium carboxidivorans P7] Length = 250 Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 3/106 (2%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 + E S TV+EIG G G T+ +L G + IE + K S + N Sbjct: 27 ADVIEYSKLDCSKTVLEIGPGTGQATEPILKTGCSYL-AIELGENLAEYTKKKFSSY-NN 84 Query: 97 LEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +I+ DD DF F++ I +P IG +++ + ++ Sbjct: 85 FQIVNDDFETYDFGNNQFDLVYSAATIQWIPEKIGFPKVYDMLESN 130 >gi|91974869|ref|YP_567528.1| putative phospholipid N-methyltransferase [Rhodopseudomonas palustris BisB5] gi|91681325|gb|ABE37627.1| putative phospholipid N-methyltransferase [Rhodopseudomonas palustris BisB5] Length = 200 Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A+ VIE+G G G +T L+ G ++++++E + F +L++ Q Sbjct: 43 LARTMAQYVDIDSTGPVIELGPGTGAITSALVEHGVEQKRLVLVEYNPSFCALLRERYPQ 102 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 ++Q DA ++ + + P + + + +L Sbjct: 103 A----TVVQGDAYRLRDSLWDVLPEPATAVVSGLPLVTKPMLTRM 143 >gi|121637871|ref|YP_978094.1| putative methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121493518|emb|CAL71992.1| Probable methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] Length = 174 Score = 56.0 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 24/140 (17%) Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 V+ +E + +L++ + ++ DA P R++AN PY I +R Sbjct: 52 VVAVELHPRRVGVLRERFPG----ITVVHADA-----ASIRLPGRPFRVVANPPYGISSR 102 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 LL ++ ++ + + + + + S + R ++ G + Sbjct: 103 LLRTLLAPNSGLVAADLV-------LQRALVCKFASRNARRFTLTVGLM--------LPR 147 Query: 193 HVFFPSPKVTSTVIHFIPHL 212 F P P V S V+ Sbjct: 148 RAFLPPPHVDSAVLVVRRRK 167 >gi|110633038|ref|YP_673246.1| ribosomal RNA adenine methylase transferase [Mesorhizobium sp. BNC1] gi|110284022|gb|ABG62081.1| Ribosomal RNA adenine methylase transferase [Chelativorans sp. BNC1] Length = 202 Score = 56.0 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +++A V+E+G G G +T+ +L G + ++ +E F L+D Sbjct: 42 TARRMASIVRPEREDLVLELGPGTGVITRSILERGVKPENLVSVEYSLDFVEKLRDDFP- 100 Query: 93 HPNRLEIIQDDALKVD 108 R+ I+ DA +D Sbjct: 101 ---RVNIVHGDAFDLD 113 >gi|260462856|ref|ZP_05811060.1| phospholipid N-methyltransferase [Mesorhizobium opportunistum WSM2075] gi|259031250|gb|EEW32522.1| phospholipid N-methyltransferase [Mesorhizobium opportunistum WSM2075] Length = 199 Score = 56.0 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 7/101 (6%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISS 91 ++ + G G V+E+G G G T+ LL G R+ + +IE D F +LK Sbjct: 29 SLAALMTRDIGPDTG-PVLELGPGTGPFTRALLARGVREEDLTLIESDSDFAALLKRRFP 87 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 + + DA+ + F + ++ LP+ + + Sbjct: 88 AA----RVFEMDAVGLRHLSLFQGPAVGAAVSGLPFRLISP 124 >gi|218462395|ref|ZP_03502486.1| phospholipid N-methyltransferase protein [Rhizobium etli Kim 5] Length = 170 Score = 56.0 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 12/119 (10%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G + ++ IE F L Sbjct: 42 TARRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHLLRTYPG 101 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPP 145 + I DA LK F + + I N P + LL + + + P Sbjct: 102 ----VHFINGDAFDLKTTLGAFGDQTFDCVISCIPLLNFPMAMRIALLESLLDRVPYRP 156 >gi|195572095|ref|XP_002104032.1| GD18660 [Drosophila simulans] gi|194199959|gb|EDX13535.1| GD18660 [Drosophila simulans] Length = 457 Score = 56.0 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 49/247 (19%) Query: 49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 TV+E+ +GPG T+ LL + R++I++E F P ++++ + +P R+++ Q D + Sbjct: 71 DTVMELNSGPGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGDFVN 130 Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159 + +K S +++++P T + A PF++ L L+FQ + Sbjct: 131 LWKLVYMDKMDGGSRVADLLSDVPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 190 Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198 E I A Y SVL + + + F P Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQTA 250 Query: 199 ---------PKVTST------VIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239 KV S ++ F P N L +L ++ + RR + Sbjct: 251 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 310 Query: 240 SLKRLGG 246 +L++ Sbjct: 311 NLEKWVP 317 >gi|228993576|ref|ZP_04153484.1| RRNA adenine dimethylase [Bacillus pseudomycoides DSM 12442] gi|228766167|gb|EEM14813.1| RRNA adenine dimethylase [Bacillus pseudomycoides DSM 12442] Length = 196 Score = 55.6 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + + ++E+G G G+ T+ ++ I IE ++ FF L+ Sbjct: 27 LAKKMVGAINFEEAKYILELGPGTGSFTREIIKRKKEHTIFILIEINEVFFKKLQKQFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 PN L +I A +K ++ + ++ T + +S+ + Sbjct: 87 DPNVL-VIHGSAENIKKYIKELQIEKVDYVLSGLPFTSLPTEVSSRILSSVMESLSEDGE 145 Query: 151 TLLFQKEVGER 161 + FQ + + Sbjct: 146 FITFQYSLARK 156 >gi|86747557|ref|YP_484053.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris HaA2] gi|86570585|gb|ABD05142.1| Ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris HaA2] Length = 200 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A+ VIE+G G G +T L+ G ++++++E + F +L++ Q Sbjct: 43 LARTMAQYVDIHSTGPVIELGPGTGAITNALVEHGVEQKRLVLVEYNPSFCALLRERYPQ 102 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 ++Q DA ++ + ++ P + + + +L Sbjct: 103 A----TVVQGDAYRLRDSLWDVLAEPATAVVSGLPLVTKPMLTRM 143 >gi|149513367|ref|XP_001516033.1| PREDICTED: similar to transcription factor b1, partial [Ornithorhynchus anatinus] Length = 87 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%) Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFN---------ISSPIRIIANLPYNIGTRLLFNWIS 139 +S P +L I+ D L + EK F I II NLP+++ T L+ W+ Sbjct: 2 LSEAAPGKLRIVHGDVLTFNVEKAFPRSLRREWDADPPNIHIIGNLPFSVSTPLIIKWLE 61 Query: 140 --ADTWPPFWES---LTLLFQKEVGE 160 + PF +TL FQKEV E Sbjct: 62 NISRKDGPFIYGRTQMTLTFQKEVAE 87 >gi|259120697|gb|ACV91990.1| ErmB [synthetic construct] Length = 47 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 21/42 (50%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 QNFL +L +I + + TV EIG G G+LT L Sbjct: 6 KYSQNFLTSEKVLNQITKQLNLKETDTVYEIGTGKGHLTTKL 47 >gi|229087365|ref|ZP_04219505.1| RRNA adenine dimethylase [Bacillus cereus Rock3-44] gi|228695933|gb|EEL48778.1| RRNA adenine dimethylase [Bacillus cereus Rock3-44] Length = 188 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 5/137 (3%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISS 91 + KK+ + + ++E+G G G+ T+ ++ I IE ++ FF L+ Sbjct: 26 RLAKKMVGAINFEEAKYILELGPGTGSFTREIIKRKKEHTIFILIEINEVFFKKLQKQFK 85 Query: 92 QHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149 PN L +I A +K E+ + ++ + +S+ + Sbjct: 86 DDPNIL-VIHGSAENIKKYIEELQIEKVDYVLSGLPFTSLPREISARILSSVMESLSEDG 144 Query: 150 LTLLFQKEVGERITAQK 166 + FQ + ++ Q Sbjct: 145 EFITFQYSLAKKAFIQS 161 >gi|195499664|ref|XP_002097046.1| GE26003 [Drosophila yakuba] gi|194183147|gb|EDW96758.1| GE26003 [Drosophila yakuba] Length = 454 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 49/247 (19%) Query: 49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D + Sbjct: 71 DTVMELNSGAGYFTRHLLDRESQFRRIILLETMDHFMPKIQELHALYPERVKVRQGDFVN 130 Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159 + +K S +++++P T + A PF++ L L+FQ + Sbjct: 131 LWKLVYMDKMDGGSRVADLLSDVPQKAYTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 190 Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201 E I A Y SVL K + + F P V Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFKHQFIAKVPREDFLPQQTV 250 Query: 202 TS------------------TVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239 S ++ F P N L +L ++ + RR + Sbjct: 251 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 310 Query: 240 SLKRLGG 246 +L++ Sbjct: 311 NLEKWVP 317 >gi|296535666|ref|ZP_06897842.1| N-6 adenine-specific DNA methylase [Roseomonas cervicalis ATCC 49957] gi|296264017|gb|EFH10466.1| N-6 adenine-specific DNA methylase [Roseomonas cervicalis ATCC 49957] Length = 250 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 40 AESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96 A + + G TV+E G G G +L + +V+ IE+D + + ++ +++ H Sbjct: 38 AAAIPARPGETVLEGGCGSGAVFLCLLARVPGLRVVAIERDPELAALARENAARNGHAGA 97 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 +E+++ D D AN PY Sbjct: 98 VEVLEGDI--ADPALRRAWPRCDHAFANPPY 126 >gi|261418441|ref|YP_003252123.1| methyltransferase type 11 [Geobacillus sp. Y412MC61] gi|319767599|ref|YP_004133100.1| methyltransferase type 11 [Geobacillus sp. Y412MC52] gi|261374898|gb|ACX77641.1| Methyltransferase type 11 [Geobacillus sp. Y412MC61] gi|317112465|gb|ADU94957.1| Methyltransferase type 11 [Geobacillus sp. Y412MC52] Length = 220 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 +I + G V+E G G GNLT+ LL G ++V IE P+ K + + R Sbjct: 40 DRILSTVADKAGQVVLEFGVGTGNLTKKLLERG-KRVYGIEP---SAPMRKKAAEKLNGR 95 Query: 97 LEIIQDDALKVDFEK 111 I++ D L+ Sbjct: 96 AVILEGDFLQFPTPP 110 >gi|228999612|ref|ZP_04159189.1| RRNA adenine dimethylase [Bacillus mycoides Rock3-17] gi|228760138|gb|EEM09107.1| RRNA adenine dimethylase [Bacillus mycoides Rock3-17] Length = 189 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + + ++E+G G G+ T+ ++ I IE ++ FF L+ Sbjct: 27 LAKKMVGAINFEEAKYILELGPGTGSFTREIIKRKKEHTIFILIEINEVFFKKLQKQFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 PN L +I A +K ++ + ++ T + +S+ + Sbjct: 87 DPNVL-VIHGSAENIKKYIKELQIEKVDYVLSGLPFTSLPTEVSSRILSSVMESLSEDGE 145 Query: 151 TLLFQKEVGER 161 + FQ + + Sbjct: 146 FITFQYSLARK 156 >gi|16262542|ref|NP_435335.1| hypothetical protein SMa0168 [Sinorhizobium meliloti 1021] gi|307300712|ref|ZP_07580487.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C] gi|14523152|gb|AAK64747.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306904246|gb|EFN34831.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C] Length = 270 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 +G GI+++EIGAG G T+ LL +++ +E D++ L+ + LE+++ Sbjct: 43 AGLRRGISILEIGAGTGLATERLLEDRPHRLLAVEPDRRLARFLRGRLDK--EELEVVE- 99 Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +++ + + F+WI A L Sbjct: 100 -----------TPFEKLKVPEKSFDLVVSATAFHWIDAAPALRRIHRL 136 >gi|332027650|gb|EGI67718.1| Dimethyladenosine transferase 2, mitochondrial [Acromyrmex echinatior] Length = 377 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 33/227 (14%) Query: 4 NNKSHSLKTILSHYKIIPKKY----MGQNFLLDLNILKKIAESSGS---LDGITVIEIGA 56 N + +L I KK + + L+D + K + + V E+ Sbjct: 25 NPDVSDIIQLLGDKNISFKKANTTIL--H-LIDKDTAAKYVSLIKNDLSKNMCYVAELNP 81 Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII-------------QDD 103 G G LT+ LL G + + E + IL+ I +++P +L++I DD Sbjct: 82 GFGILTRELLKAGVPLIHLYESNLGLHKILEIICTKYPEKLKLISFKSNLFGITRAFYDD 141 Query: 104 -ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 A K + F I S IG N + + + + + + V Sbjct: 142 KATKKYQDSFKAIESKNWEDETYMQIIGACDDANLFTFIIQNLIFRNGFMFYGRPVFYIA 201 Query: 163 TAQKNSPHYGRLS---------VLTGWRTKATMMFDISPHVFFPSPK 200 Y L+ V+ ++ +S F P PK Sbjct: 202 ILPSVWNKYNILTSLNKYTYTKVMFKLMFNYELLGTLSREAFIPWPK 248 >gi|329315326|gb|AEB89739.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus T0131] Length = 94 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 9/98 (9%) Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQS 240 M+ + P F P P V S +I H I + + K + + Sbjct: 1 MDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVY-------KWVNRE 53 Query: 241 LKRLGGENLLHQAGIETNLRAEN-LSIEDFCRITNILT 277 + L +N QA N+ N LS E F I N Sbjct: 54 YRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYK 91 >gi|21356125|ref|NP_649971.1| mitochondrial transcription factor B2 [Drosophila melanogaster] gi|74869054|sp|Q9VH38|TFB2M_DROME RecName: Full=Dimethyladenosine transferase 2, mitochondrial; AltName: Full=Mitochondrial 12S rRNA dimethylase 2; AltName: Full=Mitochondrial transcription factor B2; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2; AltName: Full=d-mtTFB2; Flags: Precursor gi|16767892|gb|AAL28164.1| GH04071p [Drosophila melanogaster] gi|23170866|gb|AAF54482.2| mitochondrial transcription factor B2 [Drosophila melanogaster] gi|46394833|gb|AAS91579.1| mitochondrial transcription factor B2 [Drosophila melanogaster] gi|220946652|gb|ACL85869.1| mtTFB2-PA [synthetic construct] gi|220956302|gb|ACL90694.1| mtTFB2-PA [synthetic construct] Length = 452 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 49/247 (19%) Query: 49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D + Sbjct: 69 DTVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGDFVN 128 Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159 + +K S +++++P T + A PF++ L L+FQ + Sbjct: 129 LWKLVYMDKMDGGSRVADLLSDVPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 188 Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198 E I A Y SVL + + + F P Sbjct: 189 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMA 248 Query: 199 ---------PKVTST------VIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239 KV S ++ F P N L +L ++ + RR + Sbjct: 249 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 308 Query: 240 SLKRLGG 246 +L++ Sbjct: 309 NLEKWVP 315 >gi|307170163|gb|EFN62571.1| Dimethyladenosine transferase 2, mitochondrial [Camponotus floridanus] Length = 434 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 29/199 (14%) Query: 29 FLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 +L+D N K + V E+ G G LT LL + + E ++ PI Sbjct: 101 YLIDRNTAAKYVSLIKNDLLKNTCFVAELSPGYGVLTTELLKADVPLIHLYEAKKELHPI 160 Query: 86 LKDISSQHPNRLEIIQ-------------------DDALKVDFEKFFNISSPIRIIAN-- 124 L I + +P RL++ L+ K + + ++I+ Sbjct: 161 LNAIHNMYPGRLDLRNFHLFAIYKLFYKLKDENQVQQILQGVENKKWEDKTSMQIVGATA 220 Query: 125 ---LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 YN+ LL P + K Y + V+ Sbjct: 221 SKYFFYNLIQSLLLRNCFMTHGRPVFYCAVPPSLWNKCSCGIDNKRMYTYTK--VIFQTM 278 Query: 182 TKATMMFDISPHVFFPSPK 200 ++ ++ + F P P+ Sbjct: 279 FDYKLLGTLNRNAFLPWPR 297 >gi|119597556|gb|EAW77150.1| transcription factor B2, mitochondrial, isoform CRA_b [Homo sapiens] Length = 203 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 27/180 (15%) Query: 131 TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM- 187 +L ++ S + F E + +KE + + N Y LSV+ + ++ Sbjct: 12 WKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLH 71 Query: 188 ------FDI-----SPHVFFPSPKVTS-----TVIHFIPHLNPI-----PCCLESLKKIT 226 FDI + +I IP N P + Sbjct: 72 MEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTKNLTPMNYNIFFHLL 131 Query: 227 QEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283 + FG+R T+ +SL L ++L Q G + + + N+ +DF + + ++D A Sbjct: 132 KHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDCA 191 >gi|296535712|ref|ZP_06897882.1| phosphatidyl-N-methylethanolamine N-methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296263961|gb|EFH10416.1| phosphatidyl-N-methylethanolamine N-methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 202 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89 ++ ++IA V+E+GAG G L++ LL G +++V+E L+ Sbjct: 42 SPSLCRRIAAQVTRGPQDYVLELGAGTGVLSRALLDQGVPPERLVVVEIVPDMAAHLRQT 101 Query: 90 SSQHPNRLEIIQDDA 104 + ++ DA Sbjct: 102 LPG----VRVVCGDA 112 >gi|16079782|ref|NP_390606.1| AdoMet-dependent methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221310664|ref|ZP_03592511.1| hypothetical protein Bsubs1_14906 [Bacillus subtilis subsp. subtilis str. 168] gi|221314987|ref|ZP_03596792.1| hypothetical protein BsubsN3_14822 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319908|ref|ZP_03601202.1| hypothetical protein BsubsJ_14733 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324189|ref|ZP_03605483.1| hypothetical protein BsubsS_14877 [Bacillus subtilis subsp. subtilis str. SMY] gi|81815556|sp|O32029|YRRT_BACSU RecName: Full=Uncharacterized methyltransferase YrrT gi|2635174|emb|CAB14670.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 213 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 8/80 (10%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +IL I G V+E G G GNLT LL G + V IE + D S Sbjct: 35 DHILDAIVR----KSGTHVLEFGPGTGNLTAKLLDAG-KTVFGIEPSPAMRKLASDKLS- 88 Query: 93 HPNRLEIIQDDALKVDFEKF 112 R EI+ D L F Sbjct: 89 --GRTEIVDGDFLTFPEPPF 106 >gi|125555396|gb|EAZ01002.1| hypothetical protein OsI_23036 [Oryza sativa Indica Group] Length = 102 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 I K GQ+ L + ++ I E +G TV+EIG+ G Sbjct: 30 GISFDKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGSARGT 72 >gi|209549074|ref|YP_002280991.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534830|gb|ACI54765.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 220 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL++ + L K+ + + V+E+G G G T LL++ A VI +E D+ K Sbjct: 65 FLMEASPLAKLLQLAAITKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEALAAEAKT 123 Query: 89 ISSQHPNRLEIIQD 102 + + ++E++ Sbjct: 124 QLAGYA-KVEVVSG 136 >gi|307209683|gb|EFN86541.1| Dimethyladenosine transferase 2, mitochondrial [Harpegnathos saltator] Length = 358 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 92/304 (30%), Gaps = 56/304 (18%) Query: 29 FLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 +L+D + + A D V E+ G G LT LL + + E+++ F PI Sbjct: 18 YLIDNHAAAEFASMIKDDLLKDTCFVAELNPGVGMLTTELLKADIPLIHLYEENKVFDPI 77 Query: 86 LKDISSQHPNRLEIIQDDALKVD-------------FEKFFNISSPIRIIANLPYNIGTR 132 L +S +P RL+ + + LK++ +K F R IG Sbjct: 78 LDSLSYTYPGRLDRRRFNLLKINILLHIDKITNRDEMQKVFQGVETKRWENTCMQVIGMT 137 Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP----------HYGRLSVLTGWRT 182 +I + + + + + + V + Y L VL Sbjct: 138 STMKFIRHVVYSLLFRNSFMTYGRTVFYMAISPTMWHKCTCDNKQNTMYTTLKVLFQLMF 197 Query: 183 KATMMFDISPHVFFPSPKVTST-------------------VIHFIPHLNPIPCCLES-- 221 ++ + F P P V+ P + + Sbjct: 198 DYKLLGKLKRKAFLPWPMKRKKKRRGHRNEILDELDYNEMFVVKLEPKGDMYSILSQEDW 257 Query: 222 --LKKITQEAFGKRRKTLRQSL---KRLGGENLLHQAGIETNLRAE--NLSIEDFCRITN 274 + RR++ R L K + + A + E +L+ ++F ++ Sbjct: 258 IIFWYFVRH--TMRRRSNRVILEIEKWIPDSGVKIIAQFNHTIFTEFGDLTPDEFLKLFK 315 Query: 275 ILTD 278 Sbjct: 316 EFQS 319 >gi|239834769|ref|ZP_04683097.1| phospholipid N-methyltransferase [Ochrobactrum intermedium LMG 3301] gi|239822832|gb|EEQ94401.1| phospholipid N-methyltransferase [Ochrobactrum intermedium LMG 3301] Length = 258 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 7/95 (7%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS 90 ++ + I G VIE+G G G T LL G R +I+IE + F +L+ Sbjct: 94 PSLARLITREISPGTG-PVIELGPGTGVFTYALLKRGVDPRDLILIEFNPDFVSMLRKRF 152 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + +IQ DA ++ S I++ L Sbjct: 153 PRS----TVIQADATQLAALDLLPPGSCKNIVSGL 183 >gi|297605841|ref|NP_001057674.2| Os06g0490000 [Oryza sativa Japonica Group] gi|255677058|dbj|BAF19588.2| Os06g0490000 [Oryza sativa Japonica Group] Length = 102 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 I K GQ+ L + ++ I E +G TV+EIG+ G Sbjct: 30 GISFDKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGSARGT 72 >gi|150389565|ref|YP_001319614.1| ribosomal RNA adenine dimethylase [Alkaliphilus metalliredigens QYMF] gi|149949427|gb|ABR47955.1| ribosomal RNA adenine dimethylase [Alkaliphilus metalliredigens QYMF] Length = 185 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89 N+ K+ E + ++E G G G T+ +L ++ IE + F+ ILK+ Sbjct: 24 SKNLADKMIEDINFSNAECILEYGPGTGIFTEKILQKKKNNTVLLTIEYNDAFYNILKNK 83 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPFWE 148 H N + A ++ NI +I+ +P+ ++ + + +S+ E Sbjct: 84 FEDHQNFFIVKDSAANIIEHLDRHNIKKVDYVISGIPFASLDDNISCDILSSTKEILGNE 143 Query: 149 SLTLLFQKEVGE 160 + + FQ + + Sbjct: 144 GVFITFQYTLFK 155 >gi|241740632|gb|ACS68243.1| phospholipid N-methyltransferase [Bradyrhizobium sp. SEMIA 6144] Length = 199 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A V+E+G G G +T L+ G ++++++E + F +L+D Q Sbjct: 42 LARTMAHYVDIDSDAPVVELGPGTGAITSALVERGVDQKRLVLVEYNPGFCALLRDRYPQ 101 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 +++Q DA ++ + +S+P + + + +L Sbjct: 102 A----KVVQGDAYRLRDTLWNVLSAPASAVVSGLPLVTKPMLTRL 142 >gi|332158500|ref|YP_004423779.1| methyltransferase related protein [Pyrococcus sp. NA2] gi|331033963|gb|AEC51775.1| methyltransferase related protein [Pyrococcus sp. NA2] Length = 204 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 S G ++G + ++GAG G L+ L LGA+KV +E D + ILK+ + + E+ Sbjct: 44 SLGDIEGKVIADLGAGTGVLSYGALLLGAKKVYAVEIDSEAVEILKENLKEFKGKFEVFL 103 Query: 102 DDA 104 D Sbjct: 104 GDV 106 >gi|169260675|gb|ACA52064.1| erythromycin resistance methylase [Streptococcus pyogenes] gi|169260679|gb|ACA52067.1| erythromycin resistance methylase [Streptococcus pyogenes] gi|169260683|gb|ACA52070.1| erythromycin resistance methylase [Streptococcus pyogenes] Length = 67 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLC 65 >gi|209883573|ref|YP_002287430.1| ribosomal RNA adenine methylase transferase [Oligotropha carboxidovorans OM5] gi|209871769|gb|ACI91565.1| ribosomal RNA adenine methylase transferase [Oligotropha carboxidovorans OM5] Length = 198 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A + VIE+G G G +T L+ G +++I++E + F +L++ Q Sbjct: 42 LARTMASYVDTETEAPVIELGPGTGAITDALVAHGVDQKRLILVEFNPGFCALLRERYPQ 101 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 ++Q DA +D +++ LP + +L Sbjct: 102 A----TVVQGDAYHLDKTLAEIAQPAAAVVSGLPL-VTKPMLTRL 141 >gi|284045843|ref|YP_003396183.1| methyltransferase type 11 [Conexibacter woesei DSM 14684] gi|283950064|gb|ADB52808.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684] Length = 192 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 L+ I+ ++ + G V+E+G GPG T +L ++ +E D++ L + Sbjct: 19 LVHETIVPEVLDEHDVTLGDDVLELGPGPGV-TTDMLRKRVDRLTALEFDERLHRRLANR 77 Query: 90 SSQHPNRLEIIQDDALKVDFEK 111 S N +++ DA + FE Sbjct: 78 LSGEANT-TVVRGDATAMPFED 98 >gi|183982371|ref|YP_001850662.1| hypothetical protein MMAR_2358 [Mycobacterium marinum M] gi|183175697|gb|ACC40807.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 190 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 + G V+EIG G G ++L+ K+ +E D L++ + II Sbjct: 30 ADVDLGDNVLEIGPGYGAFLRVLVDKTP-KLTAVEIDPAMARRLQERYGEQA---RIING 85 Query: 103 D 103 D Sbjct: 86 D 86 >gi|182677131|ref|YP_001831277.1| ribosomal RNA adenine methylase transferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633014|gb|ACB93788.1| ribosomal RNA adenine methylase transferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 264 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89 ++ + +A +IE+G G G +T+ LL G ++I+IE D F +LK Sbjct: 34 SRSLARMMARYVDLGVPGPIIELGPGTGPITEALLQHGVAPERLILIEYDSAFCQLLKQR 93 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S + ++Q DA ++ + P I Sbjct: 94 FSG----VRVVQGDAYRLRQSLGPILEQPAACI 122 >gi|56421078|ref|YP_148396.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus kaustophilus HTA426] gi|81346792|sp|Q5KWV8|Y2543_GEOKA RecName: Full=Uncharacterized methyltransferase GK2543 gi|56380920|dbj|BAD76828.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus kaustophilus HTA426] Length = 215 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 +I + G V+E G G GNLT+ LL G ++V IE P+ K + + R Sbjct: 35 DRILSTVADKAGQVVLEFGVGTGNLTKKLLERG-KQVYGIEP---SAPMRKKAAEKLSGR 90 Query: 97 LEIIQDDALKVDFEK 111 I+ D L+ Sbjct: 91 AVILDGDFLQFPTPP 105 >gi|27375792|ref|NP_767321.1| phospholipid N-methyltransferase [Bradyrhizobium japonicum USDA 110] gi|15341632|emb|CAB91878.1| PpmtA protein [Bradyrhizobium japonicum] gi|27348930|dbj|BAC45946.1| phospholipid N-methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 199 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92 + + +A V+E+G G G +T L+ G ++++++E + F +L+D Q Sbjct: 42 LARTMAHYVDVNSDAPVVELGPGTGAITSALVERGVDQKRLVLVEYNPGFCALLRDRYPQ 101 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 +++Q DA ++ + +S+P + + + +L Sbjct: 102 A----KVVQGDAYRLRDTLWNVLSAPASAVVSGLPLVTKPMLTRL 142 >gi|218295159|ref|ZP_03495995.1| methyltransferase small [Thermus aquaticus Y51MC23] gi|218244362|gb|EED10887.1| methyltransferase small [Thermus aquaticus Y51MC23] Length = 374 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 +L+ + + SL G V+++GAG G LT L LGA +V +E D L+ ++ Sbjct: 219 LLEALVTAVPSLKGRRVLDLGAGYGALTLPLARLGA-EVTAVEDDLVSVLSLRRSLEENG 277 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136 + D E I+ N P+++G ++ + Sbjct: 278 LEARALHSDV----DEALTPEERFDIIVTNPPFHVGGAVILD 315 >gi|115522375|ref|YP_779286.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris BisA53] gi|115516322|gb|ABJ04306.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris BisA53] Length = 200 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A VIE+G G G +T L+ G +++++IE + F +L+D Q Sbjct: 43 LARTMANYVDIHSDAPVIELGPGTGAITHALIAHGVDPKRLVLIEYNPSFCALLRDRYPQ 102 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 ++Q DA ++ + +S + + + +L Sbjct: 103 A----TVVQGDAYRLRDSLWKVMSERASAVVSGLPLVTKPMLTRL 143 >gi|229542991|ref|ZP_04432051.1| Methyltransferase type 12 [Bacillus coagulans 36D1] gi|229327411|gb|EEN93086.1| Methyltransferase type 12 [Bacillus coagulans 36D1] Length = 213 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 KI ++ V+E G G GNLT LL G K+I IE + I+ + Sbjct: 35 DKILDAVRDRATGFVVEFGPGTGNLTGKLLEKG-LKIIGIEPSANM----RKIAQKKHPD 89 Query: 97 LEIIQDDALKVDFEKFFN 114 ++II D L ++ + Sbjct: 90 VKIIDGDFLNFHVQEKAD 107 >gi|14521938|ref|NP_127415.1| methyltransferase related protein [Pyrococcus abyssi GE5] gi|5459158|emb|CAB50644.1| Methyltransferase related protein [Pyrococcus abyssi GE5] Length = 208 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 + G ++G + ++GAG G L+ L+LGA+KV +E D+ ILK + + E+ Sbjct: 42 TLGDIEGKVIADLGAGTGVLSYGALSLGAKKVYAVEVDEDAVEILKTNLKKFEGKFEVFI 101 Query: 102 DDA 104 D Sbjct: 102 GDV 104 >gi|317057019|ref|YP_004105486.1| type 12 methyltransferase [Ruminococcus albus 7] gi|315449288|gb|ADU22852.1| Methyltransferase type 12 [Ruminococcus albus 7] Length = 250 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I + G V+E+G G G T +L G IE F +L+ N Sbjct: 29 IIAKADIGRGTKVLELGPGTGQATDPILDTGCDY-TAIELGSNFAEVLRKKYGGRGN-YR 86 Query: 99 IIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 +I DD + DF + F+ I +P + F +++ Sbjct: 87 LINDDFITHDFNGEKFDFIYSAATIQWIPEIVAFGKTFELLNSG 130 >gi|218906056|ref|YP_002453890.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus AH820] gi|218539826|gb|ACK92224.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus AH820] Length = 192 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ ++ Q Sbjct: 146 FITFQYSFVKKGFIQ 160 >gi|47568001|ref|ZP_00238707.1| phospholipid N-methyltransferase, putative [Bacillus cereus G9241] gi|47555304|gb|EAL13649.1| phospholipid N-methyltransferase, putative [Bacillus cereus G9241] Length = 192 Score = 54.0 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKVKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKN 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISA-DTWPP 145 N + ++ A +K E+F + +LP + R+L N + A Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145 Query: 146 FWESLTLLFQKEVGERIT 163 F L +KE + Sbjct: 146 FITFQYSLVKKEFIQHFF 163 >gi|237816472|ref|ZP_04595465.1| PmtA, phospholipid N-methyltransferase [Brucella abortus str. 2308 A] gi|237788539|gb|EEP62754.1| PmtA, phospholipid N-methyltransferase [Brucella abortus str. 2308 A] Length = 204 Score = 54.0 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E G G +T+ +L G + + IE F L Sbjct: 45 TARRMASVIDVNSGLPVLEFGPDTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 104 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 105 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 160 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 161 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 197 >gi|62290967|ref|YP_222760.1| phospholipid N-methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700878|ref|YP_415452.1| SAM-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189025181|ref|YP_001935949.1| SAM (and some other nucleotide) binding motif [Brucella abortus S19] gi|254690263|ref|ZP_05153517.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 6 str. 870] gi|254694750|ref|ZP_05156578.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 3 str. Tulya] gi|254696379|ref|ZP_05158207.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 2 str. 86/8/59] gi|254731293|ref|ZP_05189871.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 4 str. 292] gi|256258516|ref|ZP_05464052.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 9 str. C68] gi|260546232|ref|ZP_05821972.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038] gi|260755801|ref|ZP_05868149.1| phospholipid N-methyltransferase [Brucella abortus bv. 6 str. 870] gi|260759024|ref|ZP_05871372.1| phospholipid N-methyltransferase [Brucella abortus bv. 4 str. 292] gi|260760749|ref|ZP_05873092.1| phospholipid N-methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260884826|ref|ZP_05896440.1| phospholipid N-methyltransferase [Brucella abortus bv. 9 str. C68] gi|261215076|ref|ZP_05929357.1| phospholipid N-methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297247354|ref|ZP_06931072.1| phosphatidylethanolamine N-methyltransferase [Brucella abortus bv. 5 str. B3196] gi|62197099|gb|AAX75399.1| PmtA, phospholipid N-methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82616979|emb|CAJ12087.1| SAM (and some other nucleotide) binding motif [Brucella melitensis biovar Abortus 2308] gi|189020753|gb|ACD73475.1| SAM (and some other nucleotide) binding motif [Brucella abortus S19] gi|260096339|gb|EEW80215.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038] gi|260669342|gb|EEX56282.1| phospholipid N-methyltransferase [Brucella abortus bv. 4 str. 292] gi|260671181|gb|EEX58002.1| phospholipid N-methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675909|gb|EEX62730.1| phospholipid N-methyltransferase [Brucella abortus bv. 6 str. 870] gi|260874354|gb|EEX81423.1| phospholipid N-methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916683|gb|EEX83544.1| phospholipid N-methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297174523|gb|EFH33870.1| phosphatidylethanolamine N-methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 199 Score = 54.0 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E G G +T+ +L G + + IE F L Sbjct: 40 TARRMASVIDVNSGLPVLEFGPDTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192 >gi|194902568|ref|XP_001980721.1| GG17302 [Drosophila erecta] gi|190652424|gb|EDV49679.1| GG17302 [Drosophila erecta] Length = 454 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 49/247 (19%) Query: 49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 TV+E+ +G G T+ LL + R++I++E F P ++++ + +P R+++ Q D + Sbjct: 71 DTVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPRIQELHALYPERVKVRQGDFVN 130 Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159 + +K S ++ ++P T + A F++ L L+FQ + Sbjct: 131 LWKLVYMDKMDGGSRVADLLGDVPQKAFTDDINMLVFGAVGSYQFFKHLINSLIFQTSLF 190 Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198 E I A Y SVL + + + F P Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQTV 250 Query: 199 --P-------KVTST------VIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239 P KV S ++ F P N L +L ++ + RR + Sbjct: 251 YNPTKSSKLVKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 310 Query: 240 SLKRLGG 246 +L++ Sbjct: 311 NLEKWVP 317 >gi|321312253|ref|YP_004204540.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis BSn5] gi|320018527|gb|ADV93513.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis BSn5] Length = 213 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 I ++ S G V+E G G GNLT LL G + V IE + D S R Sbjct: 35 DHILDAIVSKSGTHVLEFGPGTGNLTAKLLDAG-KTVFGIEPSPAMRKLASDKLS---GR 90 Query: 97 LEIIQDDALKVDFEKF 112 EI+ D L F Sbjct: 91 SEIVDGDFLTFPEPPF 106 >gi|241204402|ref|YP_002975498.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858292|gb|ACS55959.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 220 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL++ + L K+ + + V+E+G G G T LL++ A VI +E D+ K Sbjct: 65 FLMEASPLAKLLQLAAITKDDFVLEVGCGTGY-TSALLSIVAGSVIALECDETLATEAKA 123 Query: 89 ISSQHPNRLEIIQD 102 + + ++E++ Sbjct: 124 QLAGYA-KVEVVAG 136 >gi|153953362|ref|YP_001394127.1| CbiT [Clostridium kluyveri DSM 555] gi|219853991|ref|YP_002471113.1| hypothetical protein CKR_0648 [Clostridium kluyveri NBRC 12016] gi|146346243|gb|EDK32779.1| CbiT [Clostridium kluyveri DSM 555] gi|219567715|dbj|BAH05699.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 186 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 38 KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94 +I + T+++IGAG G+L+ + V +E+D++ IL+ + Sbjct: 22 RILSIAKMEIKEDDTLLDIGAGTGSLSIQMSKCSPLGSVTAVERDREALEILEKNKEKFK 81 Query: 95 N-RLEIIQDDALKVDFE 110 L I++ DAL V+ Sbjct: 82 AYNLNIVEGDALSVEPS 98 >gi|291485133|dbj|BAI86208.1| hypothetical protein BSNT_03961 [Bacillus subtilis subsp. natto BEST195] Length = 213 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 I ++ S G V+E G G GNLT LL G + V IE + D S R Sbjct: 35 DHILDAIVSKSGTHVLEFGPGTGNLTAKLLDAG-KTVFGIEPSPAMRKLASDKLS---GR 90 Query: 97 LEIIQDDALKVDFEKF 112 EI+ D L F Sbjct: 91 SEIVDGDFLTFPEPPF 106 >gi|190889984|ref|YP_001976526.1| phospholipid N-methyltransferase [Rhizobium etli CIAT 652] gi|190695263|gb|ACE89348.1| phospholipid N-methyltransferase protein [Rhizobium etli CIAT 652] Length = 199 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 14/128 (10%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 K++A G+ V+E+G G G +T+ +L G + ++ IE F L Sbjct: 42 TAKRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHL---LRA 98 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146 +P + I DA LK F + + I N P + LL + + D PP Sbjct: 99 YPG-VHFINGDAFDLKTTLGAFGDQTFDCVISCIPLLNFPMAMRVSLLESLL--DRLPPG 155 Query: 147 WESLTLLF 154 + + + Sbjct: 156 RPVVQISY 163 >gi|154253443|ref|YP_001414267.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154157393|gb|ABS64610.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Parvibaculum lavamentivorans DS-1] Length = 220 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 FL++ + K+ + + V+++G G G T +L L A V+ +E D+ Sbjct: 63 FLMEPRVFAKMVQLAEIGPEDLVLDVGCGTGYSTAVLARL-AGTVVALECDENLAA 117 >gi|169260687|gb|ACA52073.1| erythromycin resistance methylase [Streptococcus pyogenes] Length = 66 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 QNF+ +K+I + + +IEIG+G G+ T+ L+ + R V IE D+ F Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLF 65 >gi|209551894|ref|YP_002283811.1| phospholipid N-methyltransferase protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537650|gb|ACI57585.1| phospholipid N-methyltransferase protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 199 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 K++A G+ V+E+G G G +T+ +L G + ++ IE F L Sbjct: 42 TAKRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHL---LRA 98 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146 +P + I DA LK F + + I N P + LL + + Sbjct: 99 YPG-VHFINGDAFDLKTTLGTFGDQTFDCVISCIPLLNFPMAMRVSLLESLLDRLPAGRP 157 Query: 147 WESLTLL 153 ++ Sbjct: 158 VVQISYG 164 >gi|228948576|ref|ZP_04110855.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811075|gb|EEM57417.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 200 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|206896140|ref|YP_002247766.1| menaquinone biosynthesis methyltransferase UbiE [Coprothermobacter proteolyticus DSM 5265] gi|206738757|gb|ACI17835.1| menaquinone biosynthesis methyltransferase UbiE [Coprothermobacter proteolyticus DSM 5265] Length = 199 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88 D +K I G V+++G G G L LL +V+ ++ + + ++ Sbjct: 22 HDPRKIKDIMNILKPKPGDHVLDVGCGTGVLIPYLLESIGPTGRVVGLDYSKNMLRLARE 81 Query: 89 IS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 Q ++ + D + + + F++ + P G+ Sbjct: 82 KFPKQTYPNVDFVLADVMAFETDDLFDLVICYSSFPHFPDKEGS 125 >gi|222084598|ref|YP_002543127.1| phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase protein [Agrobacterium radiobacter K84] gi|221722046|gb|ACM25202.1| phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase protein [Agrobacterium radiobacter K84] Length = 197 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 +K+A G+ V+E+G G G +T+ +L G + ++ IE F+ L + Sbjct: 40 TARKMASVINLQSGLPVLELGPGTGAITKAILARGVEPQNLVAIEYSTDFYNHLVRRYAG 99 Query: 93 HPNRLEIIQDDALKVD 108 + I DA +D Sbjct: 100 ----VNFINGDAFDLD 111 >gi|302551017|ref|ZP_07303359.1| O-methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302468635|gb|EFL31728.1| O-methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 406 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS 91 +++ ++ + +G +G V+EIG G G T +L L V IE D D Sbjct: 129 PSLIVRMLDVAGISEGHKVLEIGTGTGYSTAILCSRLSDNNVYSIEYDPGLAATAADHIH 188 Query: 92 QHPNRLEIIQDDAL--KVDFEKFFNISSPIRIIANLP 126 +I D L D ++ +I + + P Sbjct: 189 AAGYHPTLITGDGLAGHKDDAEYDHIVATCAVRHIPP 225 >gi|228929877|ref|ZP_04092892.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124394|ref|ZP_04253582.1| RRNA adenine dimethylase [Bacillus cereus 95/8201] gi|228659046|gb|EEL14698.1| RRNA adenine dimethylase [Bacillus cereus 95/8201] gi|228829793|gb|EEM75415.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 200 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|262037783|ref|ZP_06011225.1| methyltransferase [Leptotrichia goodfellowii F0264] gi|261748255|gb|EEY35652.1| methyltransferase [Leptotrichia goodfellowii F0264] Length = 243 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%) Query: 12 TILSHYKIIPKKYMGQNFLLDLNILK---KIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 T++ KII + QNF LD +L KI + V++IG G G + +L Sbjct: 13 TVIKRMKIIQRNDF-QNFTLDTVLLADFTKI-----NRKTKKVLDIGTGCGIIPILLAEK 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 +++ IE ++ I + + R+ II DD +++K F I+ N PY Sbjct: 67 SKAEIVGIELQKEMADIAERNVQNYEERINIINDDI--KNYQKIFKKDEFDCIVTNPPY 123 >gi|322788205|gb|EFZ13987.1| hypothetical protein SINV_10284 [Solenopsis invicta] Length = 444 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 30/200 (15%) Query: 30 LLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 L+D + K + + E+ G G LT+ LL G V + E + + +L Sbjct: 116 LIDKDTAAKYVSLIKNDLLKNMCYIAELNPGFGVLTRELLEAGVPLVHLYEGNLKLHEVL 175 Query: 87 KDISSQHPNRLEII-----------------------QDDALKVDFEKFFNISSPIRIIA 123 + I +++ ++ +I ++ K K + + +++I Sbjct: 176 ETICTKYSGKVNLISSKYSNLFGITRAYYDDKVIDEKYQNSFKAMESKNWEDKTYMQVIG 235 Query: 124 -NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER---ITAQKNSPHYGRLSVLTG 179 N + T ++ + + + + + + + N Y V+ Sbjct: 236 ANDSKYLITFIIHSLLFRHGFMFYGRPIFYIAILPSLWHKYNMCTFTNKKLYTHTKVMFK 295 Query: 180 WRTKATMMFDISPHVFFPSP 199 ++ ++ F P P Sbjct: 296 LMFNCELLGTLNRKAFIPWP 315 >gi|41615127|ref|NP_963625.1| hypothetical protein NEQ337 [Nanoarchaeum equitans Kin4-M] gi|40068851|gb|AAR39186.1| NEQ337 [Nanoarchaeum equitans Kin4-M] Length = 193 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88 L D + I T++EIG G G+LT L L K+IV EKD ++ PILK+ Sbjct: 25 LKD---IGYIIARVLPEKDWTIVEIGPGSGSLTMYLAYLVYPNKIIVYEKDDRWIPILKE 81 Query: 89 ISSQ 92 S+ Sbjct: 82 NLSK 85 >gi|150398726|ref|YP_001329193.1| hypothetical protein Smed_3542 [Sinorhizobium medicae WSM419] gi|150030241|gb|ABR62358.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 200 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 12/127 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G K+I IE F+ LK Sbjct: 42 TARRMASVVDPDSGLPVLELGPGTGVITKAILERGIEPEKLISIEYSTDFYNQLKAQF-- 99 Query: 93 HPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + ++ I DA +D ++ F+ + N P + LL + +S + Sbjct: 100 --DGVQFINGDAFDLDRTLGSLKDQQFDSVISAVPLLNFPMHRRVELLEDLLSRIPFGRP 157 Query: 147 WESLTLL 153 ++ Sbjct: 158 VIQISYG 164 >gi|190575773|ref|YP_001973618.1| putative protein-L-isoaspartate O-methyltransferase [Stenotrophomonas maltophilia K279a] gi|190013695|emb|CAQ47330.1| putative protein-L-isoaspartate O-methyltransferase [Stenotrophomonas maltophilia K279a] Length = 215 Score = 52.9 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLE 98 ++ G V+EIG G G L+ + L AR V+ +E D + + +S + Sbjct: 73 QALDLQPGDEVLEIGTGSGFLSACIGAL-ARDVLSLEIDPELATAARARLDASGLGTNVR 131 Query: 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 + DAL E+ F++ + +P + Sbjct: 132 VEVADALSWQTERRFDVICVTGAVDVVPSQFAS 164 >gi|196033189|ref|ZP_03100602.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus W] gi|195994618|gb|EDX58573.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus W] Length = 192 Score = 52.9 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|116251793|ref|YP_767631.1| protein-l-isoaspartate o-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115256441|emb|CAK07525.1| putative protein-L-isoaspartate O-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 221 Score = 52.9 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL++ + L K+ + + V+E+G G G T LL++ A VI +E D+ K Sbjct: 66 FLMEASPLAKLLQLAAITKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDETLATEAKA 124 Query: 89 ISSQHPNRLEIIQD 102 + + ++E++ Sbjct: 125 QLAGYA-KVEVVTG 137 >gi|294814990|ref|ZP_06773633.1| protein-L-isoaspartate D-aspartate O-methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326443361|ref|ZP_08218095.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294327589|gb|EFG09232.1| protein-L-isoaspartate D-aspartate O-methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 389 Score = 52.9 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91 +++ ++ + G V+E+G G G +L GA+ V+ IE D+ + Sbjct: 103 PSVVFRMLRDLDAHPGDRVLEVGTGTGWNAALLAHRTGAQNVVTIEVDRTVAERARTTLE 162 Query: 92 QHPNRLEIIQDD 103 + + +I D Sbjct: 163 RFGTAVRVIHGD 174 >gi|254387624|ref|ZP_05002863.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197701350|gb|EDY47162.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 370 Score = 52.9 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91 +++ ++ + G V+E+G G G +L GA+ V+ IE D+ + Sbjct: 84 PSVVFRMLRDLDAHPGDRVLEVGTGTGWNAALLAHRTGAQNVVTIEVDRTVAERARTTLE 143 Query: 92 QHPNRLEIIQDD 103 + + +I D Sbjct: 144 RFGTAVRVIHGD 155 >gi|257091499|ref|ZP_05585860.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis CH188] gi|257000311|gb|EEU86831.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis CH188] Length = 133 Score = 52.9 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 11/104 (10%) Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 L +L + + + F P PKV S +I H +P L F Sbjct: 29 LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV-- 82 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274 K + + ++L +N HQA NLS E I N Sbjct: 83 SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVLSIFN 124 >gi|146337331|ref|YP_001202379.1| phospholipid N-methyltransferase [Bradyrhizobium sp. ORS278] gi|146190137|emb|CAL74129.1| phospholipid N-methyltransferase [Bradyrhizobium sp. ORS278] Length = 200 Score = 52.9 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A+ VIE+G G G +T L+ G ++++++E + F +L+D Sbjct: 43 LARTMAQYVDPHGTGPVIELGPGTGAITAALVEHGIDQKRLVLVEYNPSFCALLRDRYPH 102 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 +++Q DA ++ + + +P + + + +L Sbjct: 103 A----KVVQGDAYRLRDTLWNVLGAPASAVVSGLPLVTKPMLTRM 143 >gi|189459461|ref|ZP_03008246.1| hypothetical protein BACCOP_00085 [Bacteroides coprocola DSM 17136] gi|189463546|ref|ZP_03012331.1| hypothetical protein BACCOP_04269 [Bacteroides coprocola DSM 17136] gi|189429744|gb|EDU98728.1| hypothetical protein BACCOP_04269 [Bacteroides coprocola DSM 17136] gi|189433830|gb|EDV02815.1| hypothetical protein BACCOP_00085 [Bacteroides coprocola DSM 17136] Length = 140 Score = 52.9 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 26/45 (57%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 P ++ GQ+F +D ++K + + TV++IGAG G LT L Sbjct: 55 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHL 99 >gi|169883510|gb|ACA97850.1| putative dimethyladenosine transferase [VK grapevine yellows phytoplasma type A] Length = 396 Score = 52.9 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 8/101 (7%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 DG ++E+GAG GN+T+ L+ G + VI +E D +L+D L++I+ D Sbjct: 280 LNDGEKILELGAGSGNVTKYLIKKFGVKNVIALEYDNHLCQVLRDKYKG----LQVIEGD 335 Query: 104 A---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 A +K+ +K I I++ LP ++ T ++ + Sbjct: 336 ACNFIKLLQDKNVGIDKIKGIVSTLPLSVFTPEKLKELNDN 376 >gi|119716439|ref|YP_923404.1| methyltransferase type 11 [Nocardioides sp. JS614] gi|119537100|gb|ABL81717.1| Methyltransferase type 11 [Nocardioides sp. JS614] Length = 203 Score = 52.9 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 21/172 (12%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 G V+EIG GPG T +++ GA V ++ D + + H +R+ + D Sbjct: 35 LPAGSRVLEIGCGPGYGTSLIIDYFGAGHVDAVDLDPRMIGKARRRLRHHSDRVRLAVGD 94 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 A D + A + I + + + + +EV Sbjct: 95 A--TDLHAALGVGEE-AYDAAFDFAIVHHIEDWRAALAEITRVLRPGGVFYFEEVTAHAL 151 Query: 164 AQKN------SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209 A+ + P R + ++++ H P TVI Sbjct: 152 ARPSYRALFDHPERDRFTAE-------EFLYELPRHGLRP----LGTVIRIR 192 >gi|210624462|ref|ZP_03294327.1| hypothetical protein CLOHIR_02284 [Clostridium hiranonis DSM 13275] gi|210153074|gb|EEA84080.1| hypothetical protein CLOHIR_02284 [Clostridium hiranonis DSM 13275] Length = 149 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 16/156 (10%) Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 N+P+ I T+++ + + P + L+ +K +R +LS+L + Sbjct: 1 NIPFYITTKIIKKLLLEELNSP--TDMWLVMEKGSAKRFMGIPRE---SKLSLLLKTKFD 55 Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243 ++ + F P P V +++F + + T +F + +L+ Sbjct: 56 IKIVHYFNREDFHPMPSVDCVLVYF-KRKYKYDISKDEWNEYT--SFISKS---INNLRD 109 Query: 244 LGGENLLHQ----AGIETNLRAENLSIEDFCRITNI 275 + +N +H GI N +E +S D+ ++ Sbjct: 110 VFTKNQIHAVIKYLGINLNNISE-VSYNDWIQLFRY 144 >gi|153624|gb|AAA26877.1| ermAM protein A [Plasmid pAM-beta-1] Length = 112 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 11/104 (10%) Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 L +L + + + F P PKV S +I H +P L F Sbjct: 8 LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV-- 61 Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274 K + + ++L +N HQA NLS E I N Sbjct: 62 SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVLSIFN 103 >gi|297529293|ref|YP_003670568.1| methyltransferase type 11 [Geobacillus sp. C56-T3] gi|297252545|gb|ADI25991.1| Methyltransferase type 11 [Geobacillus sp. C56-T3] Length = 260 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 +I + G V+E G G GNLT+ LL G ++V IE P+ K + + R Sbjct: 80 DRILSTVADKAGQVVLEFGVGTGNLTKKLLERG-KRVYGIEP---SAPMRKKAAEKLSGR 135 Query: 97 LEIIQDDALKVDFEK 111 ++ D L+ Sbjct: 136 AVMLDGDFLQFPTPP 150 >gi|312195457|ref|YP_004015518.1| methyltransferase type 11 [Frankia sp. EuI1c] gi|311226793|gb|ADP79648.1| Methyltransferase type 11 [Frankia sp. EuI1c] Length = 195 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 G G V+E+G GPG LT +L ++ +E D+ L + + +E++ D Sbjct: 29 GVDLGDDVLEVGPGPG-LTTDVLRTLTGRLTAVEVDRDLADALAGRLAG--SNVEVVSAD 85 Query: 104 A 104 A Sbjct: 86 A 86 >gi|90420764|ref|ZP_01228670.1| putative ribosomal RNA adenine methylase transferase [Aurantimonas manganoxydans SI85-9A1] gi|90335055|gb|EAS48816.1| putative ribosomal RNA adenine methylase transferase [Aurantimonas manganoxydans SI85-9A1] Length = 213 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNR 96 + + ++E+G G G +T+ LL G ++ IE D +F L+ Sbjct: 49 MVRHATIDLDGPILELGPGLGVVTRTLLEHGVAPERITSIEYDSEFARQLQRRFPG---- 104 Query: 97 LEIIQDDALKVD 108 + +I D +D Sbjct: 105 VNVINGDGFDLD 116 >gi|297154271|gb|ADI03983.1| O-methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 735 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 +S G G V+E G GPG +T L LG V +E D ++ ++ +R + Sbjct: 460 QSLGLAAGDRVLESGTGPGLVTAALCEILGDTAVTTVEADPHLAEAARERLARLGHRPRV 519 Query: 100 IQDDALKVDFEKFFN 114 ++ D L + F+ Sbjct: 520 VRGDGLAGRPGERFD 534 >gi|229118318|ref|ZP_04247674.1| RRNA adenine dimethylase [Bacillus cereus Rock1-3] gi|228665148|gb|EEL20634.1| RRNA adenine dimethylase [Bacillus cereus Rock1-3] Length = 200 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EKN-VIVVHGSAENIKKYMEEFNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|169883512|gb|ACA97851.1| putative dimethyladenosine transferase [VK grapevine yellows phytoplasma type B] Length = 394 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 8/101 (7%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 DG ++E+GAG GN+T+ L+ G + VI +E D +L+D L++I+ D Sbjct: 278 LNDGEKILELGAGSGNVTKYLIHKFGVKNVIALEYDNHLCQVLRDKYEG----LQVIEGD 333 Query: 104 A---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 A +K+ +K I I++ LP ++ T ++ + Sbjct: 334 ACNFIKLLKDKKVGIDKIKGIVSTLPLSVFTPEKLKELNDN 374 >gi|168704986|ref|ZP_02737263.1| ribosomal RNA adenine dimethylase domain protein [Gemmata obscuriglobus UQM 2246] Length = 239 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93 +K+ + +++E+GAG G +T L L +++VIE D L+ + Sbjct: 73 ARKLLDGIDWAHARSIVELGAGTGPITAELVRLAHPKARLVVIELDPVLCGRLQARFRES 132 Query: 94 PNRLEIIQDDALKV 107 PN +E++ DA K Sbjct: 133 PN-VEVVLGDATKF 145 >gi|324999722|ref|ZP_08120834.1| ribosomal RNA adenine dimethylase domain-containing protein [Pseudonocardia sp. P1] Length = 210 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 9/141 (6%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPIL 86 FL + +++A+ V+E+GAGPG L + + + + IE D + L Sbjct: 24 FLTGRRLCRQLAQVVPHGTNGVVVELGAGPGVLAEPIRARLGPNARYLAIEIDPELVAHL 83 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 ++ H LE+++ D D E+ + + I + + + + Sbjct: 84 RE----HKPWLEVVEGDV--ADLERILDEAG-IDRVDAFVSTLPWAVFPQTLRLSVMGVI 136 Query: 147 WESLTLLFQKEVGERITAQKN 167 L + A N Sbjct: 137 ARRLVPDGVMSMIITWMALPN 157 >gi|296446333|ref|ZP_06888278.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b] gi|296256106|gb|EFH03188.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b] Length = 223 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 7/97 (7%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS 90 + + +A V+E+G G G +TQ LL G A +++++E + +F +L+ Sbjct: 59 PMLARAMASYVDLSRPGPVVELGPGTGPVTQALLEHGVPASRLLLVEYEARFCDLLRQRF 118 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLP 126 ++++Q DA + + PI ++++LP Sbjct: 119 PG----VQVVQGDAYSLKQTLDGKVEGPISTVVSSLP 151 >gi|158335755|ref|YP_001516927.1| methyltransferase [Acaryochloris marina MBIC11017] gi|158305996|gb|ABW27613.1| methyltransferase, putative [Acaryochloris marina MBIC11017] Length = 263 Score = 52.5 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 21/130 (16%) Query: 30 LLDLNILKKI--------AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKD 79 L L ++KI +S+G +E+GAG G++TQ + + K V+ ++ D Sbjct: 17 LKRLQAIEKIFDPTSHQRLKSTGINTNWRCLEVGAGAGSITQWMAGMVGEKGQVVAVDLD 76 Query: 80 QQFFPILKDISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 +F L+ +E+++ D L +D + F + + +I N L Sbjct: 77 TRFVANLE------AGNVEVVEGDIQHLPLDKQSFDLVHARYVLIHNPD---AHAFLSKL 127 Query: 138 ISADTWPPFW 147 + + Sbjct: 128 LELVKPGGWI 137 >gi|229105464|ref|ZP_04236106.1| RRNA adenine dimethylase [Bacillus cereus Rock3-28] gi|228677931|gb|EEL32166.1| RRNA adenine dimethylase [Bacillus cereus Rock3-28] Length = 192 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|228961101|ref|ZP_04122727.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153034|ref|ZP_04281215.1| RRNA adenine dimethylase [Bacillus cereus m1550] gi|228630454|gb|EEK87102.1| RRNA adenine dimethylase [Bacillus cereus m1550] gi|228798544|gb|EEM45531.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 192 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|169839698|ref|ZP_02872886.1| dimethyladenosine transferase [candidate division TM7 single-cell isolate TM7a] Length = 56 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%) Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215 + +A+ + LS+L G ++FD P F P PKVTS+VI N + Sbjct: 1 KFSAKDGESEFCALSILAGLVGGCELLFDAGPSCFNPPPKVTSSVIRLQKSRNLV 55 >gi|66796390|gb|AAY56462.1| S-adenosylmethionine-6-N',N'-adenosyl rRNA dimethyltransferase [Haemophilus influenzae] Length = 33 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 15/29 (51%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESS 43 H +K GQNFL D ++++ I + Sbjct: 5 KHLGHTARKRFGQNFLHDTSVIQGIVAAI 33 >gi|281357548|ref|ZP_06244036.1| Methyltransferase type 11 [Victivallis vadensis ATCC BAA-548] gi|281316151|gb|EFB00177.1| Methyltransferase type 11 [Victivallis vadensis ATCC BAA-548] Length = 209 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 7/96 (7%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97 ++ V+E+G G G +TQ LL + + +E D F L+ Sbjct: 40 VKAIEPEKCRCVVELGPGTGVITQYLLNSIDPQSRFLAVEIDPVFHENLQKRFPGTA--- 96 Query: 98 EIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTR 132 I + DA + + + +++ LP+ + T Sbjct: 97 -IHRGDAEDLGKWLQPQKSGLADAVVSGLPWTLFTE 131 >gi|23502975|ref|NP_699102.1| phospholipid N-methyltransferase [Brucella suis 1330] gi|23349013|gb|AAN31017.1| phospholipid N-methyltransferase [Brucella suis 1330] Length = 198 Score = 52.1 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 26/170 (15%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E G G +T+ +L G + + IE F L Sbjct: 40 TARRMASVIDVNSGLPVLE-RPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 98 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146 + II+ D +D I N P + L+ + ++ Sbjct: 99 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 154 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 +T V +Y + + ++ P + Sbjct: 155 LMQITYGPSPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 191 >gi|302544725|ref|ZP_07297067.1| putative O-methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302462343|gb|EFL25436.1| putative O-methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 378 Score = 52.1 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91 +++ + A+ + G V+E+G G G T +L GA V+ IE D S Sbjct: 102 PSLVVRTAQVAELRPGQRVLEVGTGTGYSTAILCHRLGAGNVVSIEYDADLAARAAVHLS 161 Query: 92 QHPNRLEIIQDDAL-----KVDFEKFFNISSPIRIIANLPYN------IGTRLLFNWISA 140 + + D L D++ S I + + I T + ++A Sbjct: 162 EAGCAPTLAVGDGLQGCRKHADYDAIIATCSVRSIPHSWFWQLNDGGSITTTVSGWMLAA 221 Query: 141 DTWPPFWES---LTLLFQKEVGERITAQKNSP 169 + F + + A+ + Sbjct: 222 GMIRLVLDDEGTAHGRFTGDTITYMLARPHER 253 >gi|52140677|ref|YP_086152.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase [Bacillus cereus E33L] gi|51974146|gb|AAU15696.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase [Bacillus cereus E33L] Length = 192 Score = 52.1 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK + Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKF-K 85 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + + ++ A +K E+F + ++ + ++ Sbjct: 86 YEQNVIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|332367103|gb|EGJ44840.1| methyltransferase domain protein [Streptococcus sanguinis SK1059] Length = 264 Score = 52.1 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD-ISSQHPNRLEII 100 + D + ++EIG+GPG +T+ L L ++ +E D F K + + R+EI+ Sbjct: 34 ADPKDKLKILEIGSGPGVITKKLCELFPNAQITCLELDSDFVEYSKTALPDDYKERVEIL 93 Query: 101 QDDALKVDFEK 111 + D ++D ++ Sbjct: 94 KGDITQIDLDE 104 >gi|229099306|ref|ZP_04230237.1| RRNA adenine dimethylase [Bacillus cereus Rock3-29] gi|228684124|gb|EEL38071.1| RRNA adenine dimethylase [Bacillus cereus Rock3-29] Length = 192 Score = 52.1 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EKN-VIVVHGSAENIKKYMEEFNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|86355973|ref|YP_467865.1| phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolaminen- methyltransfer ase protein [Rhizobium etli CFN 42] gi|86280075|gb|ABC89138.1| probable phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamineN- methyltransferase protein [Rhizobium etli CFN 42] Length = 199 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 12/114 (10%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 K++A G+ V+E+G G G +T+ +L G + ++ IE F L Sbjct: 42 TAKRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPENLVAIEYSTDFHQHLLRTYPG 101 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISA 140 + I DA LK + + + I N P + LL + + Sbjct: 102 ----VHFINGDAFDLKTTLGDYSDRTFDCVISCIPLLNFPMAMRVSLLESLLDR 151 >gi|222084743|ref|YP_002543272.1| phospholipid N-methyltransferase protein [Agrobacterium radiobacter K84] gi|221722191|gb|ACM25347.1| phospholipid N-methyltransferase protein [Agrobacterium radiobacter K84] Length = 232 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 + + + + LDG V+E+G G G T+ LL G V E D ++ + Sbjct: 32 ERLARLMTQEIEPLDG-PVLELGPGTGVFTRALLARG-----VSECDLTLIEFGEEFVAP 85 Query: 93 HPNRL---EIIQDDALKVDFEKFFNISSPIRIIANLP 126 R ++Q DA ++ F + +++ LP Sbjct: 86 LRGRFPQARVVQMDAAQLGQCGLFADTPFGAVVSGLP 122 >gi|290581183|ref|YP_003485575.1| glucose-inhibited division protein B [Streptococcus mutans NN2025] gi|254998082|dbj|BAH88683.1| glucose-inhibited division protein B [Streptococcus mutans NN2025] Length = 263 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD-ISSQHPNRLEII 100 + D + ++EIG+GPG +T+ L L ++ +E D F K + + R+EI+ Sbjct: 33 ADPKDKLKILEIGSGPGVITKKLCELFPNAQITCLELDSDFVEYSKTALPDDYKERVEIL 92 Query: 101 QDDALKVDFEK 111 + D ++D ++ Sbjct: 93 KGDITQIDLDE 103 >gi|228942011|ref|ZP_04104554.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974942|ref|ZP_04135503.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981535|ref|ZP_04141832.1| RRNA adenine dimethylase [Bacillus thuringiensis Bt407] gi|228778214|gb|EEM26484.1| RRNA adenine dimethylase [Bacillus thuringiensis Bt407] gi|228784795|gb|EEM32813.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817680|gb|EEM63762.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942613|gb|AEA18509.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 192 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ FF LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFFKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+ + ++ + +S Sbjct: 87 EQN-VIVVHGSAENIKKYMEELNIECIDYVLSGLPFTSLPEEVSKRILSNAMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|209964857|ref|YP_002297772.1| phospholipid N-methyltransferase, putative [Rhodospirillum centenum SW] gi|209958323|gb|ACI98959.1| phospholipid N-methyltransferase, putative [Rhodospirillum centenum SW] Length = 198 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP 94 + IA + V+E G G G +T+ LL G A ++ E D L+ Sbjct: 44 RLIARNVRREPDEVVVEYGGGTGPITRCLLEAGIPASRLFTAEIDPNLANYLRRQFPD-- 101 Query: 95 NRLEIIQDDA 104 + I++ D Sbjct: 102 --VTILEGDV 109 >gi|70915228|ref|XP_732101.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56502654|emb|CAH85694.1| hypothetical protein PC301640.00.0 [Plasmodium chabaudi chabaudi] Length = 77 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 5 NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI 52 + +LKT L + PK+ +GQN+L D NI+KK+ ++ V+ Sbjct: 22 DDEQNLKTSLPSREFKPKRSLGQNYLRDENIIKKMVQAIELDASQFVL 69 >gi|241207271|ref|YP_002978367.1| phosphatidylethanolamine N-methyltransferase or phosphatidyl-N-methylethanolaminen-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861161|gb|ACS58828.1| phosphatidylethanolamine N-methyltransferase or phosphatidyl-N-methylethanolaminen-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 199 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 K++A G+ V+E+G G G +T+ +L G R ++ IE F L+ Sbjct: 42 TAKRMASVVDIHSGLPVLELGPGTGAITKAILGRGVRPENLVAIEYSTDFHKHLQRT--- 98 Query: 93 HPNRLEIIQDDA 104 +P + I DA Sbjct: 99 YPG-VHFINGDA 109 >gi|30264896|ref|NP_847273.1| ribosomal RNA adenine dimethylase domain-containing protein [Bacillus anthracis str. Ames] gi|47530382|ref|YP_021731.1| ribosomal RNA adenine dimethylase domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187712|ref|YP_030965.1| ribosomal RNA adenine dimethylase domain-containing protein [Bacillus anthracis str. Sterne] gi|65322194|ref|ZP_00395153.1| COG3963: Phospholipid N-methyltransferase [Bacillus anthracis str. A2012] gi|165869678|ref|ZP_02214336.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0488] gi|167633818|ref|ZP_02392141.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0442] gi|167638070|ref|ZP_02396348.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0193] gi|170685918|ref|ZP_02877141.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0465] gi|170705590|ref|ZP_02896054.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0389] gi|177651208|ref|ZP_02934039.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0174] gi|190567104|ref|ZP_03020019.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis Tsiankovskii-I] gi|227817623|ref|YP_002817632.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. CDC 684] gi|229600455|ref|YP_002869101.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0248] gi|254687636|ref|ZP_05151492.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. CNEVA-9066] gi|254725202|ref|ZP_05186985.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A1055] gi|254736940|ref|ZP_05194646.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. Western North America USA6153] gi|254741975|ref|ZP_05199662.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. Kruger B] gi|254754427|ref|ZP_05206462.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. Vollum] gi|254757260|ref|ZP_05209287.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. Australia 94] gi|30259571|gb|AAP28759.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. Ames] gi|47505530|gb|AAT34206.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181639|gb|AAT57015.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. Sterne] gi|164714507|gb|EDR20026.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0488] gi|167513887|gb|EDR89255.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0193] gi|167530619|gb|EDR93321.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0442] gi|170129715|gb|EDS98578.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0389] gi|170670382|gb|EDT21122.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0465] gi|172083034|gb|EDT68096.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0174] gi|190561608|gb|EDV15578.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis Tsiankovskii-I] gi|227005706|gb|ACP15449.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. CDC 684] gi|229264863|gb|ACQ46500.1| ribosomal RNA adenine dimethylase domain protein [Bacillus anthracis str. A0248] Length = 192 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|9966391|gb|AAG10237.1|AF201699_2 phospholipid N-methyltransferase [Sinorhizobium meliloti] Length = 200 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 12/127 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G K++ IE F+ LK Sbjct: 42 TARRMASVVDPESGLPVLELGPGTGVITKAILERGIEPEKLVSIEYSTDFYKQLK----A 97 Query: 93 HPNRLEIIQDDALKVDFE-KFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPF 146 H + + I DA + F +I+ N P + L+ + +S + Sbjct: 98 HFDGVHFINGDAFDLSRTLGAFKDQQFDSVISAVPLLNFPMHRRVELIEDLLSRIPFGRP 157 Query: 147 WESLTLL 153 ++ Sbjct: 158 VVQISYG 164 >gi|15964087|ref|NP_384440.1| hypothetical protein SMc00414 [Sinorhizobium meliloti 1021] gi|307301231|ref|ZP_07580993.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C] gi|307317902|ref|ZP_07597339.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83] gi|15073263|emb|CAC41771.1| Phospholipid N-methyltransferase [Sinorhizobium meliloti 1021] gi|306896304|gb|EFN27053.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83] gi|306903687|gb|EFN34274.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C] Length = 200 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 12/127 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G K++ IE F+ LK Sbjct: 42 TARRMASVVDPESGLPVLELGPGTGVITKAILERGIEPEKLVSIEYSTDFYKQLK----A 97 Query: 93 HPNRLEIIQDDALKVDFE-KFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPF 146 H + + I DA + F +I+ N P + L+ + +S + Sbjct: 98 HFDGVHFINGDAFDLSRTLGAFKDQQFDSVISAVPLLNFPMHRRVELIEDLLSRIPFGRP 157 Query: 147 WESLTLL 153 ++ Sbjct: 158 VVQISYG 164 >gi|13474481|ref|NP_106049.1| phospholipid N-methyltransferase [Mesorhizobium loti MAFF303099] gi|14025234|dbj|BAB51835.1| mlr5374 [Mesorhizobium loti MAFF303099] Length = 199 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISS 91 ++ + G G V+E+G G G T+ LL+ G R+ + +IE D F +L Sbjct: 29 SLAALMTRDIGPETG-PVLELGPGTGPFTRALLSRGVREDDLTLIESDPDFAALLMRRFP 87 Query: 92 QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 I + DA+ + F ++ LP + + Sbjct: 88 AA----RIFEMDAVGLRHLSLFPGPVVGAAVSGLPVRLISP 124 >gi|229062521|ref|ZP_04199834.1| RRNA adenine dimethylase [Bacillus cereus AH603] gi|228716804|gb|EEL68495.1| RRNA adenine dimethylase [Bacillus cereus AH603] Length = 192 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ + IE ++ FF LK Sbjct: 27 LAKKMVDVIDFNRAKCIVELGPGTGVFTKEIMKRKKKETMFLLIEINEVFFKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+ + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKTYMEELNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHESGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|167463250|ref|ZP_02328339.1| hypothetical protein Plarl_11926 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 498 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 16/155 (10%) Query: 11 KTILSHYKIIPKKY-MGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLT 67 K L+ ++ +K +GQ FL ++ K +A +++ GAG G LT +L Sbjct: 10 KERLAVNPLLKRKSELGQ-FLTPSSVAKYMASFFDKSKLYEPKILDAGAGIGALTSAVLE 68 Query: 68 L-------GARKVIVIEKDQQFFPILKDISSQHPNRLE----IIQDDALKVDFEKFFNIS 116 +V V+E D+ L+ S ++L ++ DD ++ N Sbjct: 69 RIVAEKTSNCAEVTVVEIDEVLRERLQSTLSLFEDKLNLKRGVVPDDFIEWATNHLLNED 128 Query: 117 SPIRIIA-NLPYNIGTRLLFNWISADTWPPFWESL 150 S + + I S+ S+ Sbjct: 129 SLLAEKKIRFTHAILNPPYKKIASSSRHRKLIRSV 163 >gi|257869905|ref|ZP_05649558.1| adenine methylase [Enterococcus gallinarum EG2] gi|257804069|gb|EEV32891.1| adenine methylase [Enterococcus gallinarum EG2] Length = 168 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 24/164 (14%) Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 + + D LK F N R+ N+P+NI T ++ + + L+ + Sbjct: 1 MRVYHVDVLKY---SFPNKDIQYRVFGNIPFNISTDIVRKVVFHSRAY----QIDLIVEY 53 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI- 215 R+ L + ++ I + F P P V ++ + N Sbjct: 54 GFALRLMDTSRLLGA-----LLLLEVEVHILKKIPNYYFHPKPNVQCALVRLVRRSNRFS 108 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH----QAGI 255 +E KK + + ++ + +N L +AGI Sbjct: 109 KKEIEEYKKFIEA-------WISGNIHLIFTKNQLRRSLAKAGI 145 >gi|322382731|ref|ZP_08056581.1| hypothetical protein PL1_0381 [Paenibacillus larvae subsp. larvae B-3650] gi|321153300|gb|EFX45738.1| hypothetical protein PL1_0381 [Paenibacillus larvae subsp. larvae B-3650] Length = 501 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 16/155 (10%) Query: 11 KTILSHYKIIPKKY-MGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLT 67 K L+ ++ +K +GQ FL ++ K +A +++ GAG G LT +L Sbjct: 13 KERLAVNPLLKRKSELGQ-FLTPSSVAKYMASFFDKSKLYEPKILDAGAGIGALTSAVLE 71 Query: 68 L-------GARKVIVIEKDQQFFPILKDISSQHPNRLE----IIQDDALKVDFEKFFNIS 116 +V V+E D+ L+ S ++L ++ DD ++ N Sbjct: 72 RIVAEKTSNCAEVTVVEIDEVLRERLQSTLSLFEDKLNLKRGVVPDDFIEWATNHLLNED 131 Query: 117 SPIRIIA-NLPYNIGTRLLFNWISADTWPPFWESL 150 S + + I S+ S+ Sbjct: 132 SLLAEKKIRFTHAILNPPYKKIASSSRHRKLIRSV 166 >gi|229198997|ref|ZP_04325683.1| RRNA adenine dimethylase [Bacillus cereus m1293] gi|228584463|gb|EEK42595.1| RRNA adenine dimethylase [Bacillus cereus m1293] Length = 200 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ + I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKGTIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|126725880|ref|ZP_01741722.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales bacterium HTCC2150] gi|126705084|gb|EBA04175.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales bacterium HTCC2150] Length = 268 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 LLD + K+ ++ V++IG G G + LL + V+ +E + + + + Sbjct: 112 LLDPRTMGKMLDALDVQPDDVVLDIGCGLGY-SSALLARMSDAVVAVEDNAELAAEAQRL 170 Query: 90 SSQ-HPNRLEIIQDD 103 S+ + + + D Sbjct: 171 LSEVGADNAAVFEGD 185 >gi|116250101|ref|YP_765939.1| phospholipid N-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115254749|emb|CAK05823.1| putative phospholipid N-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 199 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 K++A G+ V+E+G G G +T+ +L G R ++ IE F L+ Sbjct: 42 TAKRMASVVDIHSGLPVLELGPGTGAITKAILGRGVRPENLVAIEYSTDFHKHLQRTYPG 101 Query: 93 HPNRLEIIQDDA 104 + I DA Sbjct: 102 ----VHFINGDA 109 >gi|229048536|ref|ZP_04194097.1| RRNA adenine dimethylase [Bacillus cereus AH676] gi|229147402|ref|ZP_04275751.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST24] gi|296505293|ref|YP_003666993.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis BMB171] gi|228636084|gb|EEK92565.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST24] gi|228722800|gb|EEL74184.1| RRNA adenine dimethylase [Bacillus cereus AH676] gi|296326345|gb|ADH09273.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis BMB171] Length = 192 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ FF LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFFKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+ + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEELNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|307942724|ref|ZP_07658069.1| phospholipid N-methyltransferase [Roseibium sp. TrichSKD4] gi|307773520|gb|EFO32736.1| phospholipid N-methyltransferase [Roseibium sp. TrichSKD4] Length = 218 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISS 91 ++ +K+A V+E+G G G++T+ LL G ++ + VIE +F +L+ Sbjct: 52 DLARKMASFVDVTPHARVLELGPGTGSVTKALLARGLKRSDLTVIEYSPEFCHLLQSRFL 111 Query: 92 QHPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLP 126 + +++ D AL+ N II++LP Sbjct: 112 G----IFVVEGDAYALRNTLGLGPNEGRFDAIISSLP 144 >gi|228910682|ref|ZP_04074493.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 200] gi|228848950|gb|EEM93793.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 200] Length = 200 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ + IE ++ FF LK Sbjct: 35 LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + +I A +K E+ + ++ + +++ Sbjct: 95 EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|196249006|ref|ZP_03147706.1| Methyltransferase type 11 [Geobacillus sp. G11MC16] gi|196211882|gb|EDY06641.1| Methyltransferase type 11 [Geobacillus sp. G11MC16] Length = 215 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 +I + G V+E G G GNLT+ LL G + V IE P+ K + + R Sbjct: 35 DRILSTVADKAGQVVLEFGIGTGNLTKKLLERG-KTVYGIEP---SAPMRKKAAEKLGER 90 Query: 97 LEIIQDDALKVDFEK 111 I+ D L+ Sbjct: 91 AVIMDGDFLQFPLPP 105 >gi|229093939|ref|ZP_04225030.1| RRNA adenine dimethylase [Bacillus cereus Rock3-42] gi|228689421|gb|EEL43235.1| RRNA adenine dimethylase [Bacillus cereus Rock3-42] Length = 200 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|49481426|ref|YP_038873.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332982|gb|AAT63628.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 192 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + +IE+G G G T+ ++ ++ I IE ++ F LK + Sbjct: 27 LAKKMVDVIDFNKAKCIIELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKF-K 85 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + + ++ A +K E+F + ++ + ++ Sbjct: 86 YEQNVIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|75759278|ref|ZP_00739377.1| rRNA adenine dimethylase family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493227|gb|EAO56344.1| rRNA adenine dimethylase family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 201 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ + IE ++ FF LK Sbjct: 36 LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 95 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + +I A +K E+ + ++ + +++ Sbjct: 96 EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 154 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 155 FITFQYSLVKKGFIQ 169 >gi|228903345|ref|ZP_04067476.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 4222] gi|228967945|ref|ZP_04128955.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar sotto str. T04001] gi|228791726|gb|EEM39318.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar sotto str. T04001] gi|228856306|gb|EEN00835.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 4222] Length = 200 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ + IE ++ FF LK Sbjct: 35 LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + +I A +K E+ + ++ + +++ Sbjct: 95 EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|138896113|ref|YP_001126566.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|229892086|sp|A4IR67|Y2476_GEOTN RecName: Full=Uncharacterized methyltransferase GTNG_2476 gi|134267626|gb|ABO67821.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus thermodenitrificans NG80-2] Length = 215 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 +I + G V+E G G GNLT+ LL G + V IE P+ K + + R Sbjct: 35 DRILSTVADKAGQVVLEFGIGTGNLTKKLLERG-KTVYGIEP---SAPMRKKAAEKLGER 90 Query: 97 LEIIQDDALKVDFEK 111 I+ D L+ Sbjct: 91 AVIMDGDFLQFPLPP 105 >gi|118617185|ref|YP_905517.1| hypothetical protein MUL_1534 [Mycobacterium ulcerans Agy99] gi|118569295|gb|ABL04046.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 190 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 + G +EIG G G ++L+ K+ +E D L++ + II Sbjct: 30 ADVDLGDNALEIGPGYGAFLRVLVDKTP-KLTAVEIDPAMARRLQERYGEQA---RIING 85 Query: 103 D 103 D Sbjct: 86 D 86 >gi|157107889|ref|XP_001649984.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti] gi|108868622|gb|EAT32847.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti] Length = 426 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 50/234 (21%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 G ++E+ G G LT+ LL +++ E ++ F L + ++++ D Sbjct: 110 GLEPDRLLVEVNPGMGLLTKELLK-KTDNLMLYETEEGFESELNKLLVPENRKVQLRFVD 168 Query: 104 ALKVDFEKFFN----ISSPIRIIANLPYNIGTR---LLFNWISADTWPPFWESLTLLF-- 154 + + +++ LP + + F S F++SL Sbjct: 169 FNNYWRHSYVDTLDQGGRVEKLLEGLPRGTRWKDEEVNFRLFSVIGSLQFFKSLINSVAN 228 Query: 155 QKEVG-----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 QK + E + A Y SVL + + I F Sbjct: 229 QKGLFGLGRCEMVLAVPPLFYVHLTCRKDAGYKLYRSSSVLFQIFFEHEFIAKIPRKDFL 288 Query: 197 PSPKVTST--------------------VIHFIPHLNPIPCCLESLKKITQEAF 230 P P + S ++ +P + CL ++ AF Sbjct: 289 PWPSIHSARGRNQTQYRRLGLVGTDELYLMRVVPRRDLFDYCLPDNLRLL--AF 340 >gi|42784029|ref|NP_981276.1| ribosomal RNA adenine dimethylase domain-containing protein [Bacillus cereus ATCC 10987] gi|42739959|gb|AAS43884.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus ATCC 10987] Length = 192 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + +K+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LARKMVDVIDFHRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMESIHENGK 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|307326502|ref|ZP_07605697.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces violaceusniger Tu 4113] gi|306887910|gb|EFN18901.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces violaceusniger Tu 4113] Length = 378 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91 +++ + A+ + G V+E+G G G T +L GA V+ IE D Sbjct: 102 PSLVVRTAQVAELRSGQKVLEVGTGTGYSTAVLCHRLGAGNVVSIEYDSVLAARAAAHLG 161 Query: 92 QHPNRLEIIQDDALK-----VDFEKFFNISSPIRIIANLPYN------IGTRLLFNWISA 140 + + D LK D++ S I + + I T + ++A Sbjct: 162 EAGYTPTLAVGDGLKGCKEHADYDAIVATCSVRSIPHSWFWQLNDGGTITTTISGWMLAA 221 Query: 141 DTWPPFWES---LTLLFQKEVGERITAQKNSP 169 + F + + A+ + Sbjct: 222 GMIRLALDDEGTAHGRFTSDTITYMLARPHER 253 >gi|20089993|ref|NP_616068.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A] gi|19914958|gb|AAM04548.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A] Length = 275 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%) Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPIL 86 NF NI+K+I V++IGAGPG LT L + + V +E D + + Sbjct: 48 NF--SRNIIKRI----DFTPDSKVLDIGAGPGTLTIPLADM-VKHVTAVEPSDGMLYCLK 100 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 ++I ++ N + IQ K + ++ +P ++ Sbjct: 101 ENIKAKELNNVSWIQK---KWEDIDLKDLDAPYDVV 133 >gi|163737696|ref|ZP_02145113.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Phaeobacter gallaeciensis BS107] gi|161389222|gb|EDQ13574.1| putative protein-L-isoaspartate O-methyltransferase [Phaeobacter gallaeciensis BS107] Length = 217 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 LL+ L KI ++ V+++ G G T ++ + A+ VI +E D+ +D Sbjct: 61 LLEPRTLAKILDAIDVQPDELVLDVACGLGYSTAVIARV-AQMVIGVEDDETLASEAQDQ 119 Query: 90 SSQHPNRLEIIQDDALK 106 S I+ AL Sbjct: 120 LSAVGADNAIVHTGALD 136 >gi|113868832|ref|YP_727321.1| protein-L-isoaspartate carboxylmethyltransferase [Ralstonia eutropha H16] gi|113527608|emb|CAJ93953.1| Protein-L-isoaspartate carboxylmethyltransferase [Ralstonia eutropha H16] Length = 217 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQN L + +I + V+EIGAG G + LL AR V+ ++ P Sbjct: 57 GQNMLA-PRVEARILQDLAVRKHENVLEIGAGSGYM-AALLANRARHVLTVDI----VPE 110 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRL 133 L +++ + + D + + ++ ++P +I +P +I +++ Sbjct: 111 LVELARTNLANAGVTNVDVAEGNAADGWSAAAPYDVICISGSLPAIPQSILSQV 164 >gi|229175547|ref|ZP_04303057.1| RRNA adenine dimethylase [Bacillus cereus MM3] gi|228607943|gb|EEK65255.1| RRNA adenine dimethylase [Bacillus cereus MM3] Length = 200 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKGILNNVMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|39938792|ref|NP_950558.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] gi|39721901|dbj|BAD04391.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M] Length = 455 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 G G ++E+GAG GN+T+ L+ GA+ VI +E D++ +L++ L +I+ Sbjct: 294 GLKTGEKILELGAGSGNVTKYLVQKFGAQNVITLEYDKELCNVLRNKFPG----LTVIEG 349 Query: 103 DALKV 107 DA Sbjct: 350 DACNF 354 >gi|228936141|ref|ZP_04098944.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823486|gb|EEM69315.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 200 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|17545416|ref|NP_518818.1| protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum GMI1000] gi|17427708|emb|CAD14227.1| probable protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum GMI1000] Length = 216 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQN L + ++ + V+E+GAG G + +L G R V ++ + Sbjct: 57 GQNMLP-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELVAF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 +D +++ ++++Q DA + +++ I + ++P Sbjct: 115 ARDNLARNGVTNVDVVQGDAGQGWGNSLYDV---ICVSGSVP 153 >gi|148251811|ref|YP_001236396.1| phospholipid N-methyltransferase [Bradyrhizobium sp. BTAi1] gi|146403984|gb|ABQ32490.1| phospholipid N-methyltransferase [Bradyrhizobium sp. BTAi1] Length = 200 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A+ VIE+G G G +T L+ G ++++++E + F +L+D Q Sbjct: 43 LARTMAQYVDPHGTGPVIELGPGTGAITNALVQHGIDQKRLVLVEYNPGFCALLRDRYPQ 102 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 +++Q DA ++ + + P + + + +L Sbjct: 103 A----KVVQGDAYRLRDTLWNVLGMPASAVVSGLPLVTKPMLTRM 143 >gi|118479950|ref|YP_897101.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis str. Al Hakam] gi|229187094|ref|ZP_04314243.1| RRNA adenine dimethylase [Bacillus cereus BGSC 6E1] gi|118419175|gb|ABK87594.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis str. Al Hakam] gi|228596403|gb|EEK54074.1| RRNA adenine dimethylase [Bacillus cereus BGSC 6E1] Length = 200 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|307319123|ref|ZP_07598553.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83] gi|306895230|gb|EFN25986.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83] Length = 269 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 14/103 (13%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 GI+++EIGAG G T+ LL +++ +E D++ L+ + LE+++ Sbjct: 48 GISILEIGAGTGLATERLLEDRPHRLLAVEPDRRLARFLRGRLDK--EELEVVE------ 99 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 +++ + + F+WI A L Sbjct: 100 ------TPFEKLKVPEKSFDLVVSATAFHWIDAAPALRRIHRL 136 >gi|163740720|ref|ZP_02148113.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter gallaeciensis 2.10] gi|161385711|gb|EDQ10087.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter gallaeciensis 2.10] Length = 217 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 LL+ L KI ++ V+++ G G T ++ + A+ VI +E D+ +D Sbjct: 61 LLEPRTLAKILDAIDVQPDELVLDVACGLGYSTAVIARV-AQMVIGVEDDETMASEAQDQ 119 Query: 90 SSQHPNRLEIIQDDALK 106 S I+ AL Sbjct: 120 LSAVGADNAIVHTGALD 136 >gi|228923583|ref|ZP_04086863.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836052|gb|EEM81413.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 200 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 5/133 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVVHGSAENIKKYMEEFNIKCIDYILSGLPFTSLPEEVSKRILNNAMEVIHENGE 153 Query: 151 TLLFQKEVGERIT 163 + FQ + ++ Sbjct: 154 FITFQYSLVKKGF 166 >gi|299067764|emb|CBJ38974.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum CMR15] Length = 216 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQN L + ++ + V+E+GAG G + +L G R V ++ + Sbjct: 57 GQNMLP-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELAAF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 +D +++ ++++Q DA + +++ I + ++P Sbjct: 115 ARDNLARNGVTNVDVVQGDAGQGWGNSLYDV---ICVSGSVP 153 >gi|222147281|ref|YP_002548238.1| methyltransferase [Agrobacterium vitis S4] gi|221734271|gb|ACM35234.1| methyltransferase [Agrobacterium vitis S4] Length = 197 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 25/170 (14%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G + K++ +E F L + Sbjct: 40 TARRMASIITPESGLPVLELGPGTGVITKAILARGIKPEKLVSVEYSADFHRHLTETIPG 99 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146 + + DA L+ +S I A N P RLL + + Sbjct: 100 ----VNFVHGDAFNLEKTLGPLSGLSFDCVISAMPLLNFPMQERIRLLEDLLDRMPHGRP 155 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + ++ + A+ S + +I P + Sbjct: 156 FMQISYGPMSPI----IAKGG-------SYFIQHFDFV--VRNIPPAQLW 192 >gi|228988090|ref|ZP_04148190.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771660|gb|EEM20126.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 192 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F+ LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFYKELKRKFKN 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFNIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|205374248|ref|ZP_03227047.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus coahuilensis m4-4] Length = 212 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 21/124 (16%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 IL K+A++S V+E G G GNLT+ LL G V +E + + K+ Sbjct: 35 EEILAKVADASE----GHVLEFGCGTGNLTKKLLDRG-LTVTAVEPSPEMREVGKEKLGD 89 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 +EII D L I +P I + F+ ++ + Sbjct: 90 L---VEIIDGDFLDFS-------------IDFIPSTIVSTYAFHHLTDKEKHEAFHHYGK 133 Query: 153 LFQK 156 L QK Sbjct: 134 LLQK 137 >gi|301056336|ref|YP_003794547.1| ribosomal RNA adenine dimethylase [Bacillus anthracis CI] gi|300378505|gb|ADK07409.1| ribosomal RNA adenine dimethylase [Bacillus cereus biovar anthracis str. CI] Length = 192 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK + Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKF-K 85 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + + ++ A +K E+F + ++ + ++ Sbjct: 86 YEQNVIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|307822829|ref|ZP_07653060.1| Beta-ketoacyl synthase [Methylobacter tundripaludum SV96] gi|307736433|gb|EFO07279.1| Beta-ketoacyl synthase [Methylobacter tundripaludum SV96] Length = 3566 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 47 DGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISS-QHPNRLEIIQDD 103 G V++IG G + L L GARKV IE D+ F + I +++ II D Sbjct: 1290 PGKIVLDIGTGKEAILARLALEAGARKVYAIEMGDEAFAQAVAYIQHLGLDDKITIIHGD 1349 Query: 104 ALKVDFEKFFNIS 116 A KV+ + ++ Sbjct: 1350 ATKVEIPELADVC 1362 >gi|228917483|ref|ZP_04081032.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842155|gb|EEM87254.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 200 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 35 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + + A +K E+F + ++ + ++ Sbjct: 95 EQN-VIVAHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 153 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 154 FITFQYSLVKKGFIQ 168 >gi|78066348|ref|YP_369117.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383] gi|77967093|gb|ABB08473.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383] Length = 238 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH 93 L + + DG TVIE+GAG G T+ LL G +++++E D F L+ Sbjct: 30 LAALITADIPRDGATVIELGAGTGVFTRALLARGVASDRLVLVEADPAFANTLRHQFPA- 88 Query: 94 PNRLEIIQDDALKVDFE-KFFNISSPIRIIANLP 126 L I+Q DA+ + FF + +++ LP Sbjct: 89 ---LRIMQMDAVHLGMTGDFFGGARADAVVSGLP 119 >gi|218899998|ref|YP_002448409.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus G9842] gi|218541081|gb|ACK93475.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus G9842] Length = 192 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ + IE ++ FF LK Sbjct: 27 LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + +I A +K E+ + ++ + +++ Sbjct: 87 EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|121608175|ref|YP_995982.1| type 12 methyltransferase [Verminephrobacter eiseniae EF01-2] gi|121552815|gb|ABM56964.1| Methyltransferase type 12 [Verminephrobacter eiseniae EF01-2] Length = 190 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Query: 48 GITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 +IE+G G G TQ LL G +++++E D+ F +L+ + ++ DA Sbjct: 42 DDPIIELGPGTGVFTQALLARGVPRERLVLVEADRAFAKLLEQRFPG----VRVLHMDAA 97 Query: 106 KVDFEK-FFNISSPIRIIANLP 126 ++ FF I++ +P Sbjct: 98 HLEQTGVFFGRKKASTIVSGIP 119 >gi|320103676|ref|YP_004179267.1| ribosomal RNA adenine methylase transferase [Isosphaera pallida ATCC 43644] gi|319750958|gb|ADV62718.1| ribosomal RNA adenine methylase transferase [Isosphaera pallida ATCC 43644] Length = 194 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRL 97 ++E+GAG G +TQ + VI IE+D F L+ + P+ + Sbjct: 33 VSGIDWDTVEGLVELGAGTGPITQAIAERARPDCLVIAIERDPDFCARLRRRFANQPH-I 91 Query: 98 EIIQDDA 104 I++ D Sbjct: 92 RIVEGDV 98 >gi|251798518|ref|YP_003013249.1| methyltransferase type 11 [Paenibacillus sp. JDR-2] gi|247546144|gb|ACT03163.1| Methyltransferase type 11 [Paenibacillus sp. JDR-2] Length = 192 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 23/153 (15%) Query: 19 IIPKKYMGQNFLLDLN-----------ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67 + KK F+ + + ++ ++ + ++EIG+G G +TQ++ Sbjct: 8 LFFKK-----FIHNPKYVGSITPSSRYLANRMVAAAKWEEAENIVEIGSGTGAITQVIAK 62 Query: 68 L--GARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRII 122 KVI+ EKD++ L Q N L ++ LK + Sbjct: 63 RVMLKSKVILFEKDEEMAQKLHQNFPQFTREGNALRLVAQ--LKKHNIHEVDYIFSGLPF 120 Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155 N P ++ +L+ A + Q Sbjct: 121 YNFPTDMRLQLILQCKEALKPGGKLIAFQYSLQ 153 >gi|325983707|ref|YP_004296109.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Nitrosomonas sp. AL212] gi|325533226|gb|ADZ27947.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Nitrosomonas sp. AL212] Length = 217 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 GQ L + +I + ++E+G+G G +T +L GA V +E + Sbjct: 56 FGQVMLT-PKMEARILQELHIRKTDKILEVGSGSGYMTALLADKGAH-VYSVEIIPELKA 113 Query: 85 ILKDISSQHP-NRLEIIQDDALKVDFE 110 + + H + + Q DA + + Sbjct: 114 MAEKNLKAHGIINVTLEQGDAARGWPQ 140 >gi|167924611|ref|ZP_02511702.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei BCC215] Length = 217 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ L + +I + V+EIGAG G + +L G R V +E D Sbjct: 57 GQKMLF-PRVEARILQELAVKKHENVLEIGAGCGYMAALLAARGQR-VTTVEIDPDLAKF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 ++ ++ E++ D + K I + LP Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154 >gi|167720829|ref|ZP_02404065.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei DM98] gi|237813467|ref|YP_002897918.1| protein-L-isoaspartate [Burkholderia pseudomallei MSHR346] gi|237504673|gb|ACQ96991.1| protein-L-isoaspartate [Burkholderia pseudomallei MSHR346] Length = 217 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ L + +I + V+EIGAG G + +L G R V +E D Sbjct: 57 GQKMLF-PRVEARILQELAVKKHENVLEIGAGCGYMAALLAARGQR-VTTVEIDPDLAKF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 ++ ++ E++ D + K I + LP Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154 >gi|114452122|gb|ABI75035.1| erythromycin resistance protein [uncultured bacterium] Length = 103 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 49/114 (42%), Gaps = 11/114 (9%) Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D L+ + S N ++++ D KF P ++++++PY I + + F + Sbjct: 1 DTALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSSIPYGITSDI-FKIL 53 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 ++ F +++ Q E +++ ++ Y +V +++++ P Sbjct: 54 MFESLENFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGP 103 >gi|257058264|ref|YP_003136152.1| methyltransferase type 11 [Cyanothece sp. PCC 8802] gi|256588430|gb|ACU99316.1| Methyltransferase type 11 [Cyanothece sp. PCC 8802] Length = 274 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 12/108 (11%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 I +KI + G ++EIGAG G + Q L+ + + + + I + Sbjct: 33 GIAQKIVAIADLKPGDLIVEIGAGTGMIGQWLIAS-PYQYLGFDLSSEMLDIFRQKLPVQ 91 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 P+ ++Q D + P + I + + ++ + Sbjct: 92 PDNCRLLQAD-----------GNDPWPVANGTAKVIFSSRTIHLLNEE 128 >gi|196041483|ref|ZP_03108776.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus NVH0597-99] gi|196043778|ref|ZP_03111015.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus 03BB108] gi|196025114|gb|EDX63784.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus 03BB108] gi|196027731|gb|EDX66345.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus NVH0597-99] Length = 192 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|294942192|ref|XP_002783422.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239895877|gb|EER15218.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 226 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 +E+G G G LT+ +KV E + F L+D +++EII Sbjct: 59 NLNPETVSVEVGPGTGLLTREFSKRPGKKVYATELSEGFIQHLRDDDRIEKDKVEIIHST 118 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 + + S + ++ ++ +++ Sbjct: 119 EDDLCLPTESDGSVDLAVLCDVYHHLTHPRTI 150 >gi|225866829|ref|YP_002752207.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus 03BB102] gi|225786067|gb|ACO26284.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus 03BB102] Length = 192 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|206976982|ref|ZP_03237883.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus H3081.97] gi|217962317|ref|YP_002340889.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus AH187] gi|222098300|ref|YP_002532357.1| ribosomal RNA adenine dimethylase; phospholipid n-methyltransferase [Bacillus cereus Q1] gi|229141567|ref|ZP_04270100.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST26] gi|206744787|gb|EDZ56193.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus H3081.97] gi|217063999|gb|ACJ78249.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus AH187] gi|221242358|gb|ACM15068.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase [Bacillus cereus Q1] gi|228641907|gb|EEK98205.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST26] Length = 192 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKN 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIEYVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|218245232|ref|YP_002370603.1| type 11 methyltransferase [Cyanothece sp. PCC 8801] gi|218165710|gb|ACK64447.1| Methyltransferase type 11 [Cyanothece sp. PCC 8801] Length = 274 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 12/107 (11%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 I +KI + G ++EIGAG G + Q L+ + + + + I + P Sbjct: 34 IAEKIVAIADLKPGDLIVEIGAGTGMIGQWLIAS-PYQYLGFDLSSEMLDIFRQKLPVQP 92 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 + ++Q D + P + I + + ++ + Sbjct: 93 DNCRLLQAD-----------GNDPWPVANGTAKVIFSSRTIHLLNEE 128 >gi|115371941|ref|ZP_01459254.1| hypothetical protein STIAU_8389 [Stigmatella aurantiaca DW4/3-1] gi|115371176|gb|EAU70098.1| hypothetical protein STIAU_8389 [Stigmatella aurantiaca DW4/3-1] Length = 503 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V+EIGAG G +T+ L G +I +E D+ + LK++ P+ + D Sbjct: 297 GQRVLEIGAGIGTITREL-EAGRELLIALEVDRFYVDRLKNLFRGKPH-VRPYLSDVALA 354 Query: 108 DFEKFFNISSPIRIIANLPYNI 129 D+E +++N+ +I Sbjct: 355 DWESLQAERLDTIVLSNVLEHI 376 >gi|206969613|ref|ZP_03230567.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus AH1134] gi|228955105|ref|ZP_04117120.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072333|ref|ZP_04205537.1| RRNA adenine dimethylase [Bacillus cereus F65185] gi|229181148|ref|ZP_04308480.1| RRNA adenine dimethylase [Bacillus cereus 172560W] gi|206735301|gb|EDZ52469.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus AH1134] gi|228602339|gb|EEK59828.1| RRNA adenine dimethylase [Bacillus cereus 172560W] gi|228710758|gb|EEL62729.1| RRNA adenine dimethylase [Bacillus cereus F65185] gi|228804615|gb|EEM51219.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 192 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYIEDLNIECVDYVLSGLPFTSLPEEVSKRILNNVMEGIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|148263648|ref|YP_001230354.1| phospholipid N-methyltransferase-like protein [Geobacter uraniireducens Rf4] gi|146397148|gb|ABQ25781.1| Phospholipid N-methyltransferase-like protein [Geobacter uraniireducens Rf4] Length = 208 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 13/109 (11%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPIL 86 FL ++I + +G T++E+G G G TQ +L +++ IE + + Sbjct: 37 FLK-----RRIVDIAGICSAKTIVELGPGSGGTTQAILRAAPSYARLLSIEVNPHLHSL- 90 Query: 87 KDISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + S NRL D LK + + + +P II+ +P++ + + Sbjct: 91 --VCSIEDNRLIAHLGDCHGLK-EILSMYRLGAPEVIISGIPFSTMSNI 136 >gi|116751287|ref|YP_847974.1| hypothetical protein Sfum_3870 [Syntrophobacter fumaroxidans MPOB] gi|116700351|gb|ABK19539.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB] Length = 187 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%) Query: 28 NFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIV 75 NF+ D N+ +K++ +IE G G G T+ LL A ++I+ Sbjct: 9 NFVKDRNVASITPTSSFGVKRVCSKIDFERQNVIIEYGPGTGVFTRYLLKNMDDASRLIL 68 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLL 134 IE+++ F ILK H R+ I+ D A V D + S I++ +P+ + L Sbjct: 69 IERNKNFGSILKKKI--HDPRVVIVNDSAENVLDTLRACRESQADYILSGIPFILLNDEL 126 Query: 135 FNWISADTWP 144 N I +T Sbjct: 127 KNLILYNTHR 136 >gi|224496143|gb|ACN52455.1| erythromycin resistance methylase [Streptococcus oralis] gi|224496145|gb|ACN52456.1| erythromycin resistance methylase [Streptococcus salivarius] Length = 121 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +LT L + +++V IE D F L + R+ +I D L+ F Sbjct: 1 HLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRY 54 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 +I+ N+PY++ T+++ + + + F K + Sbjct: 55 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI 96 >gi|324328731|gb|ADY23991.1| ribosomal RNA adenine dimethylase domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 192 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + +K+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LARKMVDVIDFHRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKYKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMESIQENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|229193111|ref|ZP_04320066.1| RRNA adenine dimethylase [Bacillus cereus ATCC 10876] gi|228590375|gb|EEK48239.1| RRNA adenine dimethylase [Bacillus cereus ATCC 10876] Length = 192 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYIEDLNIECVDYVLSGLPFTSLPEEVSKRILNNVMEGIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|115525453|ref|YP_782364.1| putative phospholipid N-methyltransferase [Rhodopseudomonas palustris BisA53] gi|115519400|gb|ABJ07384.1| putative phospholipid N-methyltransferase [Rhodopseudomonas palustris BisA53] Length = 191 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 12/136 (8%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNR 96 + + + G VIE+G G G T+ LL G R+ + ++E F P+L+ Sbjct: 34 MVQGINAQTG-PVIELGPGTGVFTRALLGRGVRQQDLTLVEYGSDFIPLLQQRFPGA--- 89 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPFWESLT 151 ++ DA + EK F + +++ +P +L + + +T Sbjct: 90 -RVLWMDAAWLHREKLFEGAPVGAVVSGLGLLTMPPEKVQAILRSAFFYLRPGGAFYQIT 148 Query: 152 LLFQKEVGERITAQKN 167 V + I + Sbjct: 149 YGPHCPVADAILDRLG 164 >gi|229158449|ref|ZP_04286511.1| RRNA adenine dimethylase [Bacillus cereus ATCC 4342] gi|228625056|gb|EEK81821.1| RRNA adenine dimethylase [Bacillus cereus ATCC 4342] Length = 192 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKGKFKN 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|198282882|ref|YP_002219203.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667726|ref|YP_002425083.1| phosphatidylethanolamine N-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247403|gb|ACH82996.1| methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519939|gb|ACK80525.1| phosphatidylethanolamine N-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 200 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 18/163 (11%) Query: 29 FLLDLNIL-----------KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIV 75 FL D + + +++A G V+E+G G G +T+ LL G +++ Sbjct: 18 FLRDPHAIGAVLPSSPFLARRMATMVPQGPG-LVVELGPGMGPVTKALLESGIPPEDLVL 76 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 +E+ L+ + +E+I+ DA + + + +I ++ Sbjct: 77 VEQAPTMVRHLRQRYPE----IEVIEGDAAHIQHLVAHRGPVRAVVSSLPLRSIPKAVVE 132 Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 ++ + F R++V+ Sbjct: 133 RIFQQLPGISRHGTVFIQFTYHFRTSCQGLPAEFRRSRVAVVW 175 >gi|218233466|ref|YP_002369638.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus B4264] gi|218161423|gb|ACK61415.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus B4264] Length = 192 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVGVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E+F + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|167837570|ref|ZP_02464453.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia thailandensis MSMB43] Length = 217 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ L + +I + V+EIGAG G + +L G R V +E D Sbjct: 57 GQKMLF-PRVEARILQELAVKKHENVLEIGAGSGYMAALLAARGQR-VTTVEIDPDLAKF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 ++ ++ E++ D + K I + LP Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154 >gi|218661353|ref|ZP_03517283.1| phospholipid N-methyltransferase protein [Rhizobium etli IE4771] Length = 144 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 8/95 (8%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G + ++ IE F L Sbjct: 42 TARRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHLLRT--- 98 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANL 125 +P + I DA LK F + + I Sbjct: 99 YPG-VHFINGDAFDLKTTLGAFSDQTFDCVISCIP 132 >gi|319786046|ref|YP_004145521.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Pseudoxanthomonas suwonensis 11-1] gi|317464558|gb|ADV26290.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Pseudoxanthomonas suwonensis 11-1] Length = 220 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95 ++ ++ G +V+EIG G G T L L AR+V+ IE + ++ + Sbjct: 70 RMLQALELQGGDSVLEIGTGSGYTTACLAAL-AREVVSIEVVPELADAARERLERTGLGT 128 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 + ++ DA++ + F++ + LP Sbjct: 129 NVRVLAADAMEYTPTRTFDVVCVTAAVDVLPT 160 >gi|188582386|ref|YP_001925831.1| phospholipid N-methyltransferase [Methylobacterium populi BJ001] gi|179345884|gb|ACB81296.1| phospholipid N-methyltransferase [Methylobacterium populi BJ001] Length = 218 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A + +VIE+G G G +T+ L+ G +++++E + F +L+ Sbjct: 52 LARTMAAYADPNVSGSVIELGPGTGPVTEALIRRGFDQDRLVLVEFNPDFCTLLRRRFPG 111 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSP 118 + +I DA ++ + P Sbjct: 112 ----VTVICGDAYRIRETLRDKLGGP 133 >gi|85057695|ref|YP_456611.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789800|gb|ABC65532.1| dimethyladenosine transferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 450 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 S G ++E+GAG GN+T+ L+ G + VI +E D++ +L++ L +I+ Sbjct: 286 LDSKTGEKILELGAGSGNVTKYLVQKFGVKNVIALEFDKELCNVLRNKFPD----LTVIE 341 Query: 102 DDALKV 107 DA Sbjct: 342 GDACDF 347 >gi|170034884|ref|XP_001845302.1| mitochondrial dimethyladenosine transferase 2 [Culex quinquefasciatus] gi|167876595|gb|EDS39978.1| mitochondrial dimethyladenosine transferase 2 [Culex quinquefasciatus] Length = 415 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 48/237 (20%) Query: 6 KSHSLKTILSHYKIIPK----------KYMGQN----FLLDLNILKKIAE--SSGSLDGI 49 K ++ + K K QN +L + +A+ ++ + Sbjct: 41 KPEKIREL--EENFSAKTLDRFPAYLLKRGSQNTERFYLASQEAARDVAKLVTADLAEDT 98 Query: 50 TVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA---- 104 + E+ G G LT+ LL ++++IE D F L+ +R+E+ D Sbjct: 99 LLAEVNPGSGLLTKELLKSKKVNRLLLIEYDDWFQEGLRQFEG---SRVELKSGDFNGQW 155 Query: 105 LKVDFEKFFNISSPIRIIANLPYN--IGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 ++ + +++ LP + + F S + F+++L + G Sbjct: 156 KQIYLDSLDRGGRLEKLLEGLPRKRWMDEGINFRLFSIVSTLRFFKTLLYSVVNKKGLYG 215 Query: 163 TAQ--------------------KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 + Y SVL + + I F P P Sbjct: 216 LGRCELVLVVPPLVYVHLTCTKDAGYKLYRSGSVLFQLFFEHQFLGKIKRRDFLPWP 272 >gi|291299303|ref|YP_003510581.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728] gi|290568523|gb|ADD41488.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728] Length = 378 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%) Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97 ++ +G TV +IG G G L +L GAR V+ + + D ++ +R+ Sbjct: 192 VAAAPLPEGATVFDIGTGTGVLAALLAKRGAR-VVATDIAPRAVECAADNMTRLGLDDRV 250 Query: 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 E+++ D F ++ N P+ GT Sbjct: 251 EVVEAD--------LFPPGRADVVLCNPPWLPGTP 277 >gi|116856080|gb|ABK30588.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856083|gb|ABK30590.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856086|gb|ABK30592.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856089|gb|ABK30594.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856092|gb|ABK30596.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856095|gb|ABK30598.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856098|gb|ABK30600.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856101|gb|ABK30602.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856104|gb|ABK30604.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856107|gb|ABK30606.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856110|gb|ABK30608.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856113|gb|ABK30610.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856116|gb|ABK30612.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856119|gb|ABK30614.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856122|gb|ABK30616.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856125|gb|ABK30618.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856128|gb|ABK30620.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856131|gb|ABK30622.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856134|gb|ABK30624.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856137|gb|ABK30626.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856140|gb|ABK30628.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856143|gb|ABK30630.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856146|gb|ABK30632.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856149|gb|ABK30634.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856152|gb|ABK30636.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856155|gb|ABK30638.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856158|gb|ABK30640.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856161|gb|ABK30642.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856164|gb|ABK30644.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856167|gb|ABK30646.1| dimethyladenosine transferase [Legionella pneumophila] gi|116856170|gb|ABK30648.1| dimethyladenosine transferase [Legionella pneumophila] Length = 35 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51 + P+K GQNFL D I+ +I + L + Sbjct: 2 RHSPRKRFGQNFLQDKYIINEILRAINPLADDNM 35 >gi|1107877|emb|CAA57983.1| rRNA methylase [Staphylococcus hominis] Length = 74 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 Q F+ + + KI + + + EIG+G G+ T L+ V IE D + Sbjct: 9 SQKFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFTLELVQRC-NFVTAIEIDHKLCKT 67 Query: 86 LKDIS 90 + Sbjct: 68 TEKKL 72 >gi|316935041|ref|YP_004110023.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris DX-1] gi|315602755|gb|ADU45290.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas palustris DX-1] Length = 191 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 VIE+G G G T+ LL G R+ + ++E +F P+L+ ++ DA + Sbjct: 44 PVIELGPGTGVFTRALLKRGVRQQDLTLVEYGSEFIPLLQQRFPGA----RVLWMDAAWL 99 Query: 108 DFEKFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 EK F + +++ +P +L + +T V + I Sbjct: 100 HREKLFEGAPVGAVVSGLGLLTMPQEKVAAILRGAFFYLRPGGAFYQITYGPHCPVPDAI 159 Query: 163 TAQKN 167 + Sbjct: 160 LDRLG 164 >gi|134099971|ref|YP_001105632.1| ribosomal RNA adenine dimethylase domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291003037|ref|ZP_06561010.1| ribosomal RNA adenine dimethylase domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133912594|emb|CAM02707.1| ribosomal RNA adenine dimethylase domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 185 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKD 88 + +++A + V+E+G G G L+ + G R + IE D L+ Sbjct: 14 SPGLARQMASVVPTSGNPVVVELGPGTGALSGAVAKRLPTGGRHL-AIELDSGMVEYLRT 72 Query: 89 ISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNI 129 LE++Q DA + + I S +++ LP++I Sbjct: 73 EVPW----LEVVQGDAAHLGELLAGAGIESVDAVVSGLPWSI 110 >gi|114705400|ref|ZP_01438308.1| putative phospholipid N-methyltransferase [Fulvimarina pelagi HTCC2506] gi|114540185|gb|EAU43305.1| putative phospholipid N-methyltransferase [Fulvimarina pelagi HTCC2506] Length = 210 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89 + + + E S ++E+G G G +T+ +L G ++ IE +Q F LK Sbjct: 42 SRDYCRTMVEHSSVDLDGPILELGPGLGAVTRAMLERGIDPGRITSIEFEQNFASALKKR 101 Query: 90 SSQHPNRLEIIQDDALKVD 108 + + +IQ DA +D Sbjct: 102 FPE----INVIQGDAFDLD 116 >gi|326317245|ref|YP_004234917.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374081|gb|ADX46350.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 236 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 14/158 (8%) Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 +GQ L + ++ + V+EIGAG G + LL A V+ +E Sbjct: 75 RLGQCMLA-PRVEARMLQDLQVKPTDRVLEIGAGSGYM-AALLAHRAEHVVTLEIVPDLV 132 Query: 84 PILKD-ISSQHPNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141 ++ + S + + + Q D A + F++ + +P + L + Sbjct: 133 EFARENLLSAGIDNVTVRQGDGARDAIPDGPFDVIVLSGSVHEVPQH-----LLALLREG 187 Query: 142 TWPPFWES----LTLLFQKEVGERITA-QKNSPHYGRL 174 + F + G+R A Q + RL Sbjct: 188 GRLAAITGDEPVMRATFVRRTGDRFAATQPWDTNASRL 225 >gi|229082079|ref|ZP_04214562.1| RRNA adenine dimethylase [Bacillus cereus Rock4-2] gi|228701226|gb|EEL53729.1| RRNA adenine dimethylase [Bacillus cereus Rock4-2] Length = 192 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ +++IE ++ F LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETILLLIEINEVFCKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K E + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYIEDLNIECVDYVLSGLPFTSLPEEVSKRILNNVMEGIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|163797598|ref|ZP_02191547.1| Methyltransferase type 12 [alpha proteobacterium BAL199] gi|159177073|gb|EDP61635.1| Methyltransferase type 12 [alpha proteobacterium BAL199] Length = 181 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + I VIE+G G G T+ LL G +++++E+ +F +L+ Sbjct: 13 LAALITSEINPQTT-PVIELGPGTGVFTRALLARGVPPERLLLVERGAEFATMLEQRFPG 71 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISA 140 + ++ DA + + F+ +I+ LP+ ++ TR + + Sbjct: 72 ----VGVLAMDASDLGRVELFDGEPAKAVISGLPFLSMPTRQIMGVLDG 116 >gi|229815440|ref|ZP_04445772.1| hypothetical protein COLINT_02488 [Collinsella intestinalis DSM 13280] gi|229808973|gb|EEP44743.1| hypothetical protein COLINT_02488 [Collinsella intestinalis DSM 13280] Length = 190 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDD 103 +G V++ AG G L +L+ GA + + D+ ++K ++ P R ++I D Sbjct: 46 EGSRVLDAFAGSGALGLEVLSRGAEHAVFFDLDRSAAALVKRNLAKLSCAPARFQVICGD 105 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQK 156 + ++ + PY +G++ + + A + ++F++ Sbjct: 106 VIASARRGRVPGGPFDAVLIDPPYALGSQPAIDLVEALRGHGLLADGAVVMFER 159 >gi|157132946|ref|XP_001662715.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti] gi|108871020|gb|EAT35245.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti] Length = 506 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 49/244 (20%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 G ++E+ G G LT+ LL +++ E ++ F L ++ ++ + D Sbjct: 110 GLEPDRLLVEVNPGMGLLTKELLK-KTDNLMLYETEEGFESELNNLLVPENRKVPLRFVD 168 Query: 104 ALKVDFEKFFN----ISSPIRIIANLPYNIGTR---LLFNWISADTWPPFWESLTLLF-- 154 + + +++ LP + + F S F++SL Sbjct: 169 FNNYWRHSYVDTLDQGGRVEKLLEGLPRGTRWKDEEVNFRLFSVIGSLQFFKSLINSVAN 228 Query: 155 QKEVG-----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 QK + E + A Y SVL + + I F Sbjct: 229 QKGLFGLGRCEMVLAVPPLFFVHLTCRKDAGYKLYRSSSVLFQIFFEHEFIAKIPRKDFL 288 Query: 197 PSPKVTST--------------------VIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236 P P + S ++ +P + CL ++ F + Sbjct: 289 PWPSIHSAKGRNQTQYRRLGLVGTDELYLMRVVPRRDLFDYCLPDNLRLL-AFFVAQNMV 347 Query: 237 LRQS 240 R++ Sbjct: 348 SRKN 351 >gi|262831180|sp|Q7MNQ4|TRMN6_VIBVY RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName: Full=tRNA m6A37 methyltransferase Length = 239 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99 + +++IG G G L+ M A + ++ D ++ S P +RL + Sbjct: 38 ADFHHSQNLLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQENFSHSPWHSRLHL 97 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D LK++F F+ II N PY Sbjct: 98 QHGDVLKLNFTHRFDG-----IICNPPYFNS 123 >gi|194290446|ref|YP_002006353.1| protein-l-isoaspartate o-methyltransferase [Cupriavidus taiwanensis LMG 19424] gi|193224281|emb|CAQ70290.1| Protein-L-isoaspartate O-methyltransferase [Cupriavidus taiwanensis LMG 19424] Length = 208 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQN L + +I + TV+EIGAG G + LL AR V+ ++ P Sbjct: 48 GQNMLA-PRVEARILQDLAVRKHETVLEIGAGSGYM-AALLAHRARHVLTVDI----VPE 101 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L +++ + + D + + + ++P +I Sbjct: 102 LVELARTNLANAGVTNVDVAEGNAADGWAAAAPYDVIC 139 >gi|37678845|ref|NP_933454.1| O-methyltransferase [Vibrio vulnificus YJ016] gi|37197586|dbj|BAC93425.1| predicted O-methyltransferase [Vibrio vulnificus YJ016] Length = 253 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99 + +++IG G G L+ M A + ++ D ++ S P +RL + Sbjct: 52 ADFHHSQNLLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQENFSHSPWHSRLHL 111 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D LK++F F+ II N PY Sbjct: 112 QHGDVLKLNFTHRFDG-----IICNPPYFNS 137 >gi|27379915|ref|NP_771444.1| phospholipid N-methyltransferase [Bradyrhizobium japonicum USDA 110] gi|27353068|dbj|BAC50069.1| blr4804 [Bradyrhizobium japonicum USDA 110] Length = 222 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILK 87 L DL I ++I S+G ++E+G G G T LL G R+ + +IE F +L+ Sbjct: 31 LADL-ITREITASTGP-----ILELGPGTGAFTYNLLKRGVRQQDLTLIEYGSDFMKLLQ 84 Query: 88 DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPF 146 ++ DA ++ E+ ++ + +++ LP N+ TR + + +S + Sbjct: 85 VRFPNA----RVLWMDAGRLTTERLYDGAPVGAVVSGLPLLNMSTRKVISIVSGAF--SY 138 Query: 147 WESLTLLFQKEVGERI 162 +Q G Sbjct: 139 VRPGGAFYQFTYGMSC 154 >gi|152002559|dbj|BAF73583.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-W] Length = 455 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 G G ++E+GAG GN+T+ L+ G + VI +E D++ +L++ L +I+ Sbjct: 294 GLKTGEKILELGAGSGNVTKYLVQKFGTQNVIALEYDKELCNVLRNKFPG----LTVIEG 349 Query: 103 DALKV 107 DA Sbjct: 350 DACNF 354 >gi|53726294|ref|YP_103739.1| protein-L-isoaspartate O-methyltransferase [Burkholderia mallei ATCC 23344] gi|121599364|ref|YP_992082.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei SAVP1] gi|124384056|ref|YP_001028527.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei NCTC 10229] gi|126448237|ref|YP_001081575.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei NCTC 10247] gi|166998381|ref|ZP_02264241.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei PRL-20] gi|238561067|ref|ZP_00442743.2| protein-L-isoaspartate [Burkholderia mallei GB8 horse 4] gi|254175400|ref|ZP_04882060.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei ATCC 10399] gi|254202441|ref|ZP_04908804.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei FMH] gi|254207773|ref|ZP_04914123.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei JHU] gi|254356326|ref|ZP_04972602.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei 2002721280] gi|52429717|gb|AAU50310.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia mallei ATCC 23344] gi|121228174|gb|ABM50692.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei SAVP1] gi|124292076|gb|ABN01345.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei NCTC 10229] gi|126241107|gb|ABO04200.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei NCTC 10247] gi|147746688|gb|EDK53765.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei FMH] gi|147751667|gb|EDK58734.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei JHU] gi|148025323|gb|EDK83477.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei 2002721280] gi|160696444|gb|EDP86414.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei ATCC 10399] gi|238525481|gb|EEP88909.1| protein-L-isoaspartate [Burkholderia mallei GB8 horse 4] gi|243065444|gb|EES47630.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia mallei PRL-20] Length = 217 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ L + +I + V+EIGAG G + +L G R V +E D Sbjct: 57 GQKMLF-PRVEARILQELAVKKHENVLEIGAGGGYMAALLAARGQR-VTTVEIDPDLAKF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 ++ ++ E++ D + K I + LP Sbjct: 115 AEENLKKNGMTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154 >gi|311069210|ref|YP_003974133.1| putative AdoMet-dependent methyltransferase [Bacillus atrophaeus 1942] gi|310869727|gb|ADP33202.1| putative AdoMet-dependent methyltransferase [Bacillus atrophaeus 1942] Length = 213 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 IL I G V+E G G GNLT LL G + V +E + D S Sbjct: 35 EQILNGIVT----RSGSHVLEFGPGTGNLTAKLLEAG-KTVFGVEPSPAMRKLAADKLSG 89 Query: 93 HPNRLEIIQDDALKVDFEKFF 113 I+ D L F Sbjct: 90 QSL---IVDGDFLDFPEPPFA 107 >gi|167895518|ref|ZP_02482920.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 7894] Length = 217 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ L + +I + V+EIGAG G + +L G R V +E D Sbjct: 57 GQKMLF-PRVEARILQELAVKKHENVLEIGAGGGYMAALLAARGQR-VTTVEIDPDLAKF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 ++ ++ E++ D + K I + LP Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154 >gi|255606120|ref|XP_002538506.1| Protein arginine N-methyltransferase, putative [Ricinus communis] gi|223511809|gb|EEF23877.1| Protein arginine N-methyltransferase, putative [Ricinus communis] Length = 313 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 13/104 (12%) Query: 24 YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73 Y+GQ N L+D N + + G V+E+G G G L+ A +V Sbjct: 18 YLGQFIPLHYHHNMLMDQNRMHNFKSAIAYAVKPGARVLELGGGTGVLSWF-AAAQASRV 76 Query: 74 IVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNI 115 +E + + S H ++E+I DA + + ++ Sbjct: 77 YCVEFNPDMVREARKFLSVNPHGEKVEVIHADAFEYLPPEPVDV 120 >gi|53720258|ref|YP_109244.1| protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei K96243] gi|76810885|ref|YP_334496.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Burkholderia pseudomallei 1710b] gi|126440783|ref|YP_001060075.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 668] gi|126451653|ref|YP_001067337.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1106a] gi|134280110|ref|ZP_01766821.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 305] gi|167739812|ref|ZP_02412586.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 14] gi|167817035|ref|ZP_02448715.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 91] gi|167825446|ref|ZP_02456917.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 9] gi|167846936|ref|ZP_02472444.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei B7210] gi|167903905|ref|ZP_02491110.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei NCTC 13177] gi|167912164|ref|ZP_02499255.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 112] gi|217420757|ref|ZP_03452262.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 576] gi|226193841|ref|ZP_03789443.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei Pakistan 9] gi|242315823|ref|ZP_04814839.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1106b] gi|254180955|ref|ZP_04887553.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1655] gi|254191798|ref|ZP_04898301.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|254195990|ref|ZP_04902415.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei S13] gi|254261099|ref|ZP_04952153.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1710a] gi|254298932|ref|ZP_04966382.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 406e] gi|52210672|emb|CAH36656.1| probable protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei K96243] gi|76580338|gb|ABA49813.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Burkholderia pseudomallei 1710b] gi|126220276|gb|ABN83782.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 668] gi|126225295|gb|ABN88835.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1106a] gi|134248117|gb|EBA48200.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 305] gi|157808813|gb|EDO85983.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 406e] gi|157939469|gb|EDO95139.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|169652734|gb|EDS85427.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei S13] gi|184211494|gb|EDU08537.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1655] gi|217396169|gb|EEC36186.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 576] gi|225934146|gb|EEH30131.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei Pakistan 9] gi|242139062|gb|EES25464.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1106b] gi|254219788|gb|EET09172.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia pseudomallei 1710a] Length = 217 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ L + +I + V+EIGAG G + +L G R V +E D Sbjct: 57 GQKMLF-PRVEARILQELAVKKHENVLEIGAGGGYMAALLAARGQR-VTTVEIDPDLAKF 114 Query: 86 LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 ++ ++ E++ D + K I + LP Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154 >gi|227824175|ref|YP_002828148.1| putative RNA adenine methylase transferase [Sinorhizobium fredii NGR234] gi|227343177|gb|ACP27395.1| putative RNA adenine methylase transferase [Sinorhizobium fredii NGR234] Length = 200 Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 12/127 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 +++A G+ V+E+G G G +T+ +L G +++ +E +FF LK + Sbjct: 42 TARRMASVVNPRSGLPVLELGPGTGVITKAILERGISPDRLVSVEYSTEFFNQLKADFAG 101 Query: 93 HPNRLEIIQDDA------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + I DA L + F+ + N P + L+ + +S + Sbjct: 102 ----VNFINGDAFDLARTLGALNGQQFDSVISAVPLLNFPMHRRVELIEDLLSRIPFGRP 157 Query: 147 WESLTLL 153 ++ Sbjct: 158 VVQISYG 164 >gi|163852379|ref|YP_001640422.1| phospholipid N-methyltransferase [Methylobacterium extorquens PA1] gi|163663984|gb|ABY31351.1| phospholipid N-methyltransferase [Methylobacterium extorquens PA1] Length = 218 Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A + VIE+G G G +T+ L+ G +++++E + F +L+ Sbjct: 52 LARTMAAYADPNVSGPVIELGPGTGPVTEALIRRGFDQDRLVLVEFNPDFCTLLRRRFPG 111 Query: 93 HPNRLEIIQDDALKV 107 + +I DA ++ Sbjct: 112 ----VTVICGDAYRI 122 >gi|167763063|ref|ZP_02435190.1| hypothetical protein BACSTE_01429 [Bacteroides stercoris ATCC 43183] gi|167699403|gb|EDS15982.1| hypothetical protein BACSTE_01429 [Bacteroides stercoris ATCC 43183] Length = 236 Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEI 99 + D ++++GAG G ++ L VI +E D ++ P NR+E+ Sbjct: 33 APVQDVKRILDVGAGSGLISLQLAQRNPEAVITSVEIDPAAAAQAQENIQSSPWSNRMEV 92 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129 + D K E F++ I++N PY + Sbjct: 93 VCCDFRKYHPEDKFDL-----IVSNPPYFV 117 >gi|224496147|gb|ACN52457.1| erythromycin resistance methylase [Streptococcus pneumoniae] gi|224496149|gb|ACN52458.1| erythromycin resistance methylase [Streptococcus sanguinis] gi|224496151|gb|ACN52459.1| erythromycin resistance methylase [Streptococcus mitis] Length = 121 Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 +LT L + +++V IE D F L + R+ +I D L+ F Sbjct: 1 HLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRY 54 Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161 +I+ N+PY++ T+++ + + + F K + Sbjct: 55 KIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI 96 >gi|229032489|ref|ZP_04188457.1| RRNA adenine dimethylase [Bacillus cereus AH1271] gi|228728858|gb|EEL79866.1| RRNA adenine dimethylase [Bacillus cereus AH1271] Length = 192 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 10/138 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ F LK Sbjct: 27 LAKKMVDVIDFNRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRNFKN 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISA-DTWPP 145 N + ++ A +K E+F + +LP + R+L N I A Sbjct: 87 EQN-VIVVHGSAENIKKYMEEFNIECVDYVLSGLPFASLPEEVSKRILNNVIEAIHENGE 145 Query: 146 FWESLTLLFQKEVGERIT 163 F L +K + Sbjct: 146 FITFQYSLVKKGFIQHFF 163 >gi|325291734|ref|YP_004277598.1| phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase protein [Agrobacterium sp. H13-3] gi|325059587|gb|ADY63278.1| phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase protein [Agrobacterium sp. H13-3] Length = 197 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 12/127 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 +K+A + V+E+G G G +T+ +L G + ++ IE F+ + Sbjct: 40 TARKMASVIDPHSDLPVLELGPGTGVITKAILARGIKPERLTAIEYSTDFY---NQLLRS 96 Query: 93 HPNRLEIIQDDALKVD------FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 +P + I DA ++ + F+ + N P +LL + Sbjct: 97 YPG-VNFINGDAFDLNATLGEHQGQMFDSVISAVPMLNFPMAARIKLLDELLKRVPHGRP 155 Query: 147 WESLTLL 153 ++ Sbjct: 156 VIQISYG 162 >gi|218531138|ref|YP_002421954.1| phospholipid N-methyltransferase [Methylobacterium chloromethanicum CM4] gi|240139714|ref|YP_002964191.1| Phospholipid N-methyltransferase [Methylobacterium extorquens AM1] gi|254562126|ref|YP_003069221.1| phospholipid N-methyltransferase [Methylobacterium extorquens DM4] gi|218523441|gb|ACK84026.1| phospholipid N-methyltransferase [Methylobacterium chloromethanicum CM4] gi|240009688|gb|ACS40914.1| Phospholipid N-methyltransferase [Methylobacterium extorquens AM1] gi|254269404|emb|CAX25370.1| Phospholipid N-methyltransferase [Methylobacterium extorquens DM4] Length = 218 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + + +A + VIE+G G G +T+ L+ G +++++E + F +L+ Sbjct: 52 LARTMAAYADPNVSGPVIELGPGTGPVTEALIRRGFDQDRLVLVEFNPDFCTLLRRRFPG 111 Query: 93 HPNRLEIIQDDALKV 107 + +I DA ++ Sbjct: 112 ----VTVICGDAYRI 122 >gi|310824202|ref|YP_003956560.1| ribosomal RNA adenine methylase transferase [Stigmatella aurantiaca DW4/3-1] gi|309397274|gb|ADO74733.1| Ribosomal RNA adenine methylase transferase [Stigmatella aurantiaca DW4/3-1] Length = 417 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G V+EIGAG G +T+ L G +I +E D+ + LK++ P+ + D Sbjct: 211 GQRVLEIGAGIGTITREL-EAGRELLIALEVDRFYVDRLKNLFRGKPH-VRPYLSDVALA 268 Query: 108 DFEKFFNISSPIRIIANLPYNI 129 D+E +++N+ +I Sbjct: 269 DWESLQAERLDTIVLSNVLEHI 290 >gi|325003068|ref|ZP_08124180.1| phospholipid N-methyltransferase [Pseudonocardia sp. P1] Length = 210 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 7/101 (6%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDI 89 + +K+A + V+E+G G G +T + A + + +E D L Sbjct: 40 SQRLSEKLARIAPGHGAPVVVELGPGTGAVTSEVSRRLAPGGRHLAVELDPGMARYL--- 96 Query: 90 SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNI 129 + +HP +E+I DA K+ + + I+ +I+ LP+++ Sbjct: 97 TGRHPG-VEVINGDARKLGELLEERGIAGVDAVISGLPWSL 136 >gi|114707231|ref|ZP_01440129.1| protein-L-isoaspartate O-methyltransferase [Fulvimarina pelagi HTCC2506] gi|114537427|gb|EAU40553.1| protein-L-isoaspartate O-methyltransferase [Fulvimarina pelagi HTCC2506] Length = 214 Score = 49.8 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D ++ ++ V+EIG G G +T ++ L A V +E+ ++ + Sbjct: 62 DAATAIRLVDALDLSPEHRVLEIGTGSGFVTALIAKL-ALHVTSLERFRRLVAGAEAALQ 120 Query: 92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 + + ++ D L E + + RII + Y R+ + ++ + Sbjct: 121 RCKITNITLVHADGL----EGYGEGAPYDRIIVHSAYPSAPRIFLDQMNQQSCLICAIGA 176 Query: 151 TLLFQ 155 Q Sbjct: 177 GGDAQ 181 >gi|44920593|gb|AAS49126.1| putative methyltransferase [Aneurinibacillus thermoaerophilus] Length = 302 Score = 49.8 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 TV+EIGAG G LT LL A +V+ +E ++ I+ + QH N LEI+ + Sbjct: 66 DFGKESTVLEIGAGCGALT-GLLCEKAGQVVAVELSKRRAEIIGNRHKQH-NNLEIVIGN 123 Query: 104 ALKVDFEKFFN 114 + F++ F+ Sbjct: 124 LNDIVFKEQFD 134 >gi|15894657|ref|NP_348006.1| precorrin-6B methylase CbiT [Clostridium acetobutylicum ATCC 824] gi|15024314|gb|AAK79346.1|AE007649_11 Precorrin-6B methylase CbiT [Clostridium acetobutylicum ATCC 824] gi|325508793|gb|ADZ20429.1| Precorrin-6B methylase CbiT [Clostridium acetobutylicum EA 2018] Length = 187 Score = 49.8 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 38 KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH- 93 +I + T+++IGAG G+++ + + KVI IE++++ +L+ + Sbjct: 22 RILSIAKLEIEEDDTLLDIGAGTGSISIQMSKCTPKGKVIAIEREEKALKVLEKNKEKFK 81 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---------RLLFNWISADTWP 144 + L II+ DA +++ ++ F+ N+ I + +++ N+I+ D Sbjct: 82 AHNLYIIKGDASQLNLDESFDGVFIGGSSGNIDKIIKSYALKLKKGGKMVMNFITLDNLY 141 Query: 145 PFWESLTLL-FQKEVGERITAQKNSPHYGRLS 175 E+L L F+ E + ++ + Y LS Sbjct: 142 RAIETLKELNFEVECSQIAVSKMRAKSYMMLS 173 >gi|94497116|ref|ZP_01303689.1| putative methyltransferase [Sphingomonas sp. SKA58] gi|94423488|gb|EAT08516.1| putative methyltransferase [Sphingomonas sp. SKA58] Length = 234 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPN 95 ++I E + G VI++G+G G L + L+T +I +E D + + + Sbjct: 47 QRIVEELHLVPGDRVIDVGSGTGTLLKALMTDCPEAGLIGVEPDPDALALARRKFGAGAD 106 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 ++ L+ K P +I+++L Sbjct: 107 LVKWHNG-FLE--SLKLPAGWQPNKIVSSL 133 >gi|85373745|ref|YP_457807.1| putative methyltransferase [Erythrobacter litoralis HTCC2594] gi|84786828|gb|ABC63010.1| putative methyltransferase [Erythrobacter litoralis HTCC2594] Length = 228 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPN 95 + I E + + G VI++G G G L + L+ I +E D I + + Sbjct: 41 RAIVEEAVLVPGDKVIDVGCGTGTLLRALMASCPEAGFIGVEPDPAALAIAQRKFGAGVD 100 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 + L D + + P +I+++L Sbjct: 101 MVRWHNG-FL--DSLELSDGWQPDKIVSSL 127 >gi|146297478|ref|YP_001181249.1| methyltransferase type 11 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411054|gb|ABP68058.1| Methyltransferase type 11 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 201 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 3/86 (3%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKD 88 D + +I E G V+++G G G L + +L ++ + D ++ ++ Sbjct: 20 HDPQKVNEIIEKIQLKKGDKVLDVGCGTGVLIEYILKFVGQQGSYLGVDISKKMIERAEE 79 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFN 114 N ++ + D + + F+++F+ Sbjct: 80 KYKDIEN-VDFVCCDVVDLSFKEYFD 104 >gi|312797064|ref|YP_004029986.1| protein-L-isoaspartate O-methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168839|emb|CBW75842.1| Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) [Burkholderia rhizoxinica HKI 454] Length = 217 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ LL I +I + V+EIGAG G + LL AR V+ ++ P Sbjct: 57 GQHMLL-PKIEARILQELAVKKHEVVLEIGAGSGYM-AALLAHRARSVLTLDI----VPE 110 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 L +++ + ++ D + + P +I Sbjct: 111 LAELARDNLAANDVTNAQVETGDGSRGWPAQGPYDVICV 149 >gi|312137195|ref|YP_004004532.1| methyltransferase type 11 [Methanothermus fervidus DSM 2088] gi|311224914|gb|ADP77770.1| Methyltransferase type 11 [Methanothermus fervidus DSM 2088] Length = 274 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 N+LK+I +V+++G GPG L + + V ++ ++ +LK + + Sbjct: 58 NVLKRI----KLDPEWSVLDVGCGPGTLAIPIAKE-VKHVTAVDISKEMLKLLKKNAEKE 112 Query: 94 P-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152 + + I+ D +D EK +IA+ + L + D+ + +T Sbjct: 113 GISNINIVNADFKDIDIEKI---KPHDVVIASRFCGLTGDLKYELKKLDSLAKKYVYITS 169 Query: 153 LFQ 155 L Q Sbjct: 170 LAQ 172 >gi|163759467|ref|ZP_02166552.1| putative methyltransferase (pcm-like) transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283064|gb|EDQ33350.1| putative methyltransferase (pcm-like) transmembrane protein [Hoeflea phototrophica DFL-43] Length = 224 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 FL++ + L K+ + + V+EIG G T LL+L A V+ +E D + Sbjct: 67 FLMEPSPLAKLLQLAEIKPDHVVLEIGCAEGYAT-ALLSLIAGSVVALESDGALAEAASE 125 Query: 89 ISSQHP-NRLEIIQDD 103 S+ + + ++ D Sbjct: 126 RLSEAGFDNVAVVTGD 141 >gi|307609495|emb|CBW98992.1| hypothetical protein LPW_07771 [Legionella pneumophila 130b] Length = 208 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97 I ++ TV+E+G G G +T LL+ +KVI I+ F K ++ N + Sbjct: 60 IIQALDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSDFTANAKRKLEENNCNNV 118 Query: 98 EIIQDDALKVDFE 110 E+I DA + E Sbjct: 119 ELITGDACRGWLE 131 >gi|299822608|ref|ZP_07054494.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Listeria grayi DSM 20601] gi|299816137|gb|EFI83375.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Listeria grayi DSM 20601] Length = 224 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 16/117 (13%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 K+ G +IE G+G GNLT LL ++V+ +E + K SS+ P Sbjct: 48 KMLGKIAVQSGEKIIEFGSGTGNLTLQLLHQK-KRVMAVEP---SAAMRKKASSKLPKGF 103 Query: 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 D L+ F P I + +F+ ++A+ E L Sbjct: 104 TQYDGDLLEFPEPPF------------TPDTIVSSFVFHHLNAEEKRAAIEKYYALL 148 >gi|182677528|ref|YP_001831674.1| methyltransferase type 12 [Beijerinckia indica subsp. indica ATCC 9039] gi|182633411|gb|ACB94185.1| Methyltransferase type 12 [Beijerinckia indica subsp. indica ATCC 9039] Length = 325 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQ----QFFPILKD 88 + + + E++ T+ EIG G G+L+ L KVI ++ + + ++ Sbjct: 54 LTQALIEAAHLSGDETIYEIGCGCGDLSLALAAKLRAQGKVIALDISKPMLARAVERTQE 113 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFFNI 115 + +L+ I DA+ FE ++ Sbjct: 114 AGATEAQKLQFIAADAMTYRFEPLADL 140 >gi|16082542|ref|NP_394102.1| SAM-dependent methyltransferase [Thermoplasma acidophilum DSM 1728] Length = 185 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 +I + G ++++G GPG T L + KV ++ + ILK+ H N Sbjct: 23 DRIVDQLPISPGFDIVDLGCGPGFFTLPLASRTDGKVYAVDASDEMIEILKERIDGHSN 81 >gi|254000328|ref|YP_003052391.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylovorus sp. SIP3-4] gi|253987007|gb|ACT51864.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylovorus sp. SIP3-4] Length = 220 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 +I ++ V+EIG G G LT LL A++VI +E + + QH Sbjct: 71 RIVQALEVSKTDRVLEIGTGSGYLT-ALLATLAKEVISLEVEADLSVAAQRKLQQH 125 >gi|54293684|ref|YP_126099.1| hypothetical protein lpl0737 [Legionella pneumophila str. Lens] gi|53753516|emb|CAH14971.1| hypothetical protein lpl0737 [Legionella pneumophila str. Lens] Length = 216 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97 I ++ TV+E+G G G +T LL+ +KVI I+ F K ++ N + Sbjct: 68 IIQALDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSDFTANAKRKLEENNCNNV 126 Query: 98 EIIQDDALKVDFE 110 E+I DA + E Sbjct: 127 ELITGDACRGWLE 139 >gi|212224490|ref|YP_002307726.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus onnurineus NA1] gi|212009447|gb|ACJ16829.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus onnurineus NA1] Length = 253 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88 D I I +G G TVIE G G G LT L + A KVI E + F I + Sbjct: 80 KDAGI---IIAYAGISPGDTVIEAGVGSGALTIFLANIVGPAGKVISYEVREDFARIAQK 136 Query: 89 --ISSQHPNRLEIIQDDALKVDFEKFFN 114 + +R+ I + + E + + Sbjct: 137 NVELAGFSDRVTIKLKNIYEGIDEDYAD 164 >gi|15606087|ref|NP_213464.1| hypothetical protein aq_674 [Aquifex aeolicus VF5] gi|2983274|gb|AAC06868.1| hypothetical protein aq_674 [Aquifex aeolicus VF5] Length = 239 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102 +I++GAG G L+ L KV+ E D++ +L+ + + +E+++ Sbjct: 41 PKRNYRIIDLGAGFGFLSITLAKKYGVKVVAFEYDERMVKLLRKNVKLNGVEHLVEVVEG 100 Query: 103 DALKVDFEKFFNISSPIRIIANLPYN 128 D ++ EK + S +++N P+ Sbjct: 101 DIKEI--EKHLSRGSFNLVVSNPPFY 124 >gi|89100834|ref|ZP_01173686.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus sp. NRRL B-14911] gi|89084480|gb|EAR63629.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus sp. NRRL B-14911] Length = 212 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 I ++ V+E G G GNLT LL G R V E I ++ + + Sbjct: 37 ILDAVAGRASGHVLEFGPGTGNLTAKLLEKGLR-VTGAEPSPAMRKIAREKLGEQAS--- 92 Query: 99 IIQDDALKVDFEK 111 I++ D L + Sbjct: 93 IVEGDFLSYPDQD 105 >gi|222085270|ref|YP_002543800.1| 3-demethylubiquinone-9 3-methyltransferase protein [Agrobacterium radiobacter K84] gi|221722718|gb|ACM25874.1| 3-demethylubiquinone-9 3-methyltransferase protein [Agrobacterium radiobacter K84] Length = 256 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 I + ++EIG G G TQ L G V+ ++ + I ++ ++ PN Sbjct: 27 DDIVAFADLAAKDRILEIGCGTGQATQGLARRG-FSVLALDPGSELIGIARENLAEFPN 84 >gi|10639797|emb|CAC11769.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 172 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 +I + G ++++G GPG T L + KV ++ + ILK+ H N Sbjct: 10 DRIVDQLPISPGFDIVDLGCGPGFFTLPLASRTDGKVYAVDASDEMIEILKERIDGHSN 68 >gi|163795763|ref|ZP_02189728.1| plipastatin synthetase [alpha proteobacterium BAL199] gi|159179059|gb|EDP63594.1| plipastatin synthetase [alpha proteobacterium BAL199] Length = 1641 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 46 LDGITVIEIGAG-PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102 L G V+EIG G L++M + GARKV +E + +D + R+E+I Sbjct: 741 LAGKVVLEIGPGAQAVLSRMAIAAGARKVYAVEISEHVASQARDRLAAEGLAGRVEVIVG 800 Query: 103 DALKVDFEKFFNIS 116 D VD + +I Sbjct: 801 DIRTVDLPEPADIC 814 >gi|320157376|ref|YP_004189755.1| putative O-methyltransferase [Vibrio vulnificus MO6-24/O] gi|319932687|gb|ADV87551.1| predicted O-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 239 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99 + +++IG G G L+ M A + ++ D ++ S P +RL + Sbjct: 38 ADFHHCQNLLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQENFSHSPWHSRLHL 97 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 D LK++F F+ II N PY Sbjct: 98 QHGDVLKLNFTHRFDG-----IICNPPYFNS 123 >gi|14591689|ref|NP_143777.1| hypothetical protein PH1948 [Pyrococcus horikoshii OT3] gi|3258392|dbj|BAA31075.1| 207aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 207 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 37/67 (55%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 S G ++G V ++GAG G L+ L LGA++VI +E D++ +L + + + ++ Sbjct: 44 SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI 103 Query: 102 DDALKVD 108 D + + Sbjct: 104 GDVSEFN 110 >gi|325922051|ref|ZP_08183849.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas gardneri ATCC 19865] gi|325547461|gb|EGD18517.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas gardneri ATCC 19865] Length = 218 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPN 95 ++ ++ G V+EIG G G T L L AR+V+ +E D + + + Sbjct: 70 RMLQALDLQPGEDVLEIGTGSGFSTACLAAL-AREVVSLEIDPALATAARANLDSTGLGS 128 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 + I DA E+ F+ + LP Sbjct: 129 NVRIETADAFGWQSERRFDAICITGAVDTLPTQ 161 >gi|85543921|pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii gi|85543922|pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii gi|85543923|pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii gi|85543924|pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii Length = 207 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 37/67 (55%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 S G ++G V ++GAG G L+ L LGA++VI +E D++ +L + + + ++ Sbjct: 44 SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI 103 Query: 102 DDALKVD 108 D + + Sbjct: 104 GDVSEFN 110 >gi|257899034|ref|ZP_05678687.1| glycosyl transferase [Enterococcus faecium Com15] gi|257836946|gb|EEV62020.1| glycosyl transferase [Enterococcus faecium Com15] Length = 528 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 KI ++ G V+E G G G LT+ L+ +V ++E D++ F + + + Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69 >gi|145223449|ref|YP_001134127.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK] gi|145215935|gb|ABP45339.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK] Length = 207 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 + +EIG G G TQ++L GA V ++ D + +++ NR+ ++Q Sbjct: 32 RLVPDTQALEIGCGSGYGTQLILERFGAATVDAVDLDPAMIRRAGERLARYGNRVRLVQG 91 Query: 103 DA 104 A Sbjct: 92 SA 93 >gi|304435942|gb|ADM33800.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium abscessus ATCC 19977] gi|304435946|gb|ADM33802.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium bolletii] Length = 78 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 ++ G L D + +I SG G V+++GAG G LT L+ GAR V+ +E Sbjct: 7 RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64 Query: 82 FFPILKDISSQHP 94 L+ ++ Sbjct: 65 RARHLRSRFAEED 77 >gi|69247906|ref|ZP_00604538.1| glycosyl transferase, group 2 family protein [Enterococcus faecium DO] gi|227550503|ref|ZP_03980552.1| glycosyl transferase, group 2 family protein [Enterococcus faecium TX1330] gi|257880170|ref|ZP_05659823.1| glycosyl transferase [Enterococcus faecium 1,230,933] gi|257882972|ref|ZP_05662625.1| glycosyl transferase [Enterococcus faecium 1,231,502] gi|257888530|ref|ZP_05668183.1| glycosyl transferase [Enterococcus faecium 1,141,733] gi|257891447|ref|ZP_05671100.1| glycosyl transferase [Enterococcus faecium 1,231,410] gi|257897095|ref|ZP_05676748.1| glycosyl transferase [Enterococcus faecium Com12] gi|293377318|ref|ZP_06623522.1| methionine biosynthesis protein MetW [Enterococcus faecium PC4.1] gi|293572511|ref|ZP_06683490.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E980] gi|294620982|ref|ZP_06700181.1| glycosyl transferase, group 2 family protein [Enterococcus faecium U0317] gi|68194647|gb|EAN09133.1| glycosyl transferase, group 2 family protein [Enterococcus faecium DO] gi|227180404|gb|EEI61376.1| glycosyl transferase, group 2 family protein [Enterococcus faecium TX1330] gi|257814398|gb|EEV43156.1| glycosyl transferase [Enterococcus faecium 1,230,933] gi|257818630|gb|EEV45958.1| glycosyl transferase [Enterococcus faecium 1,231,502] gi|257824584|gb|EEV51516.1| glycosyl transferase [Enterococcus faecium 1,141,733] gi|257827807|gb|EEV54433.1| glycosyl transferase [Enterococcus faecium 1,231,410] gi|257833660|gb|EEV60081.1| glycosyl transferase [Enterococcus faecium Com12] gi|291599440|gb|EFF30458.1| glycosyl transferase, group 2 family protein [Enterococcus faecium U0317] gi|291607428|gb|EFF36771.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E980] gi|292644010|gb|EFF62116.1| methionine biosynthesis protein MetW [Enterococcus faecium PC4.1] Length = 528 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 KI ++ G V+E G G G LT+ L+ +V ++E D++ F + + + Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69 >gi|15887649|ref|NP_353330.1| methyltransferase [Agrobacterium tumefaciens str. C58] gi|15155198|gb|AAK86115.1| methyltransferase [Agrobacterium tumefaciens str. C58] Length = 197 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 12/127 (9%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 KK+A G+ V+E+G G G +T+ +L G + + IE F+ + Sbjct: 40 TAKKMASVINPHSGLPVLELGPGTGVITKAILARGIKPESLTAIEYSTDFY---NQLLRS 96 Query: 93 HPNRLEIIQDDALKVD------FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 +P + + DA +D + F+ + N P +LL + Sbjct: 97 YPG-VNFVNGDAFDLDATLGEHKGQMFDSVISAVPMLNFPMAARIKLLDELLKRVPHGRP 155 Query: 147 WESLTLL 153 ++ Sbjct: 156 VVQISYG 162 >gi|254467076|ref|ZP_05080487.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodobacterales bacterium Y4I] gi|206687984|gb|EDZ48466.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodobacterales bacterium Y4I] Length = 217 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 LL+ L K+ ++ + V+++G G G T + A+ VI +E+D+ + + Sbjct: 61 LLEPRTLAKMLDALDIQNDELVLDVGCGLGYST-AVAARVAQMVIGVEEDEDLAEDAQAL 119 Query: 90 SSQHPNRLEIIQ 101 S+ I+ Sbjct: 120 LSETGADNAIVH 131 >gi|116250242|ref|YP_766080.1| phospholipid N-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115254890|emb|CAK05964.1| putative phospholipid N-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 223 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 50/210 (23%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93 L +I S + +IE+G G G T+ LL G + + +IE +F L+ Sbjct: 34 LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFITSLQARFPTA 93 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLTL 152 ++Q DA + F +++ LP ++ R + + ++ Sbjct: 94 ----RVLQMDAAHLAHADIFEGEPVGAVVSGLPLLSMSPRKIASILAGAFA--------- 140 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT---------S 203 + Y F P P P + Sbjct: 141 ----------YMRPGGAVYQ---------------FTYGPRCPVPRPILDRLGLKAVRIG 175 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 + +P + ++++E F R Sbjct: 176 GTVRNLPPASVYRISRRKPLELSRERFSYR 205 >gi|258614486|ref|ZP_05712256.1| glycosyl transferase, group 2 family protein [Enterococcus faecium DO] Length = 505 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 KI ++ G V+E G G G LT+ L+ +V ++E D++ F + + + Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69 >gi|240102937|ref|YP_002959246.1| Ribosomal RNA adenine dimethylase, putative [Thermococcus gammatolerans EJ3] gi|239910491|gb|ACS33382.1| Ribosomal RNA adenine dimethylase, putative [Thermococcus gammatolerans EJ3] Length = 254 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88 D I I +G G TVIE GAG G LT L KVI E + F+ I K Sbjct: 81 KDAGI---IIAYAGISPGDTVIEAGAGSGALTIFLANAVGPHGKVISYEVRKDFYEIAKK 137 Query: 89 --ISSQHPNRLEIIQDDA 104 + R+ + + Sbjct: 138 NIELAGFSERVTLKNKNI 155 >gi|83814838|ref|YP_446014.1| hypothetical protein SRU_1904 [Salinibacter ruber DSM 13855] gi|294507930|ref|YP_003571988.1| Conserved hypothetical protein containing methyltransferase domain [Salinibacter ruber M8] gi|83756232|gb|ABC44345.1| conserved hypothetical protein [Salinibacter ruber DSM 13855] gi|294344258|emb|CBH25036.1| Conserved hypothetical protein containing methyltransferase domain [Salinibacter ruber M8] Length = 219 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 50/113 (44%), Gaps = 12/113 (10%) Query: 28 NFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIV 75 NFL D ++ ++++ + + V+E G G G ++ +L +++ Sbjct: 43 NFLQDQDVAAIVPSSSFLVRRVCKWIDFEEDQVVVEYGPGNGVFSEFILDRMTADSTLLL 102 Query: 76 IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +E + F +L++ +S P L + VD ++ + I++ +P++ Sbjct: 103 VESNPDFVEMLEEWTSDDPRALVVQDRAERIVDILDAHDVDAVDYIVSGIPFS 155 >gi|30022898|ref|NP_834529.1| ribosomal RNA adenine dimethylase [Bacillus cereus ATCC 14579] gi|229112294|ref|ZP_04241833.1| RRNA adenine dimethylase [Bacillus cereus Rock1-15] gi|229130112|ref|ZP_04259073.1| RRNA adenine dimethylase [Bacillus cereus BDRD-Cer4] gi|29898457|gb|AAP11730.1| Ribosomal RNA adenine dimethylase [Bacillus cereus ATCC 14579] gi|228653327|gb|EEL09204.1| RRNA adenine dimethylase [Bacillus cereus BDRD-Cer4] gi|228671134|gb|EEL26439.1| RRNA adenine dimethylase [Bacillus cereus Rock1-15] Length = 192 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 5/135 (3%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92 + KK+ + ++E+G G G T+ ++ ++ I IE ++ FF LK Sbjct: 27 LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFFKELKRKFKD 86 Query: 93 HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 N + ++ A +K + + ++ + ++ Sbjct: 87 EQN-VIVVHGSAENIKKYMGEHNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145 Query: 151 TLLFQKEVGERITAQ 165 + FQ + ++ Q Sbjct: 146 FITFQYSLVKKGFIQ 160 >gi|260222775|emb|CBA32671.1| hypothetical protein Csp_D33310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 396 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%) Query: 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK 78 K+ +GQ FL + + S G +++E+GAG G L + + + V +EK Sbjct: 7 SAKQELGQ-FLT-PAPIANLLASLLPPGGESILELGAGAGALLEAVSSRMPHLDVTAVEK 64 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALK-VDFEKFFNISSPIRIIANLPYNIGT--RLLF 135 D L+ +I DA + + I+ N PY +G + Sbjct: 65 DVALKRELRARGLASL----LIGGDATSPKTIRRLAERAPFDYIVGNPPYAMGVSRKASI 120 Query: 136 NWISA 140 + Sbjct: 121 KLLEQ 125 >gi|295695000|ref|YP_003588238.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912] gi|295410602|gb|ADG05094.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912] Length = 194 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95 +I + TV +IGAGPG T L V I+ + + +L+ P Sbjct: 25 DRILDLLAPNPADTVADIGAGPGYFTLPLAERTQGTVYAIDVEPRMLEVLQSRWPGGMPA 84 Query: 96 RLEIIQDDA 104 R+ + A Sbjct: 85 RVRPLVGAA 93 >gi|110667142|ref|YP_656953.1| S-adenosylmethionine-dependent methyltransferase-like protein [Haloquadratum walsbyi DSM 16790] gi|109624889|emb|CAJ51298.1| S-adenosylmethionine-dependent methyltransferase homolog [Haloquadratum walsbyi DSM 16790] Length = 263 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 15/174 (8%) Query: 22 KKYM---GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 K GQ L+D + + +S + G ++EI G G T ML GA V + Sbjct: 18 SKRFSRGGQ--LIDRREKRAVLDSLNPVTGADILEIACGTGRFTAMLAERGANIVGIDIS 75 Query: 79 DQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG-TRLLFN 136 D + ++ + LE+++ DA ++ F + + A +++ T F Sbjct: 76 DAMLAQGRRKARNNGVNDTLELLRGDAARLP----FPDNHFDAVFAMRFFHLAETPGTF- 130 Query: 137 WISADTWPPFWESLTLLFQK--EVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 + + S Y R S + + A + Sbjct: 131 LTEMARVSNDIVFFDTFNHRSTRIIYNWLLPMGSHLYSR-SQVKKLLSDAELAM 183 >gi|308174427|ref|YP_003921132.1| AdoMet-dependent methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307607291|emb|CBI43662.1| putative AdoMet-dependent methyltransferase [Bacillus amyloliquefaciens DSM 7] Length = 213 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 NIL I L G V+E G G GNLT L +KV +E + D S Sbjct: 35 DNILDSIVA----LSGSNVLEFGPGTGNLTAKLAAAN-KKVFGVEPSPSMRKLAADKLS- 88 Query: 93 HPNRLEIIQDDALKVDFEKF 112 ++ D L+ F Sbjct: 89 --DKAVFSDGDFLEFPAPPF 106 >gi|124262819|ref|YP_001023289.1| hypothetical protein Mpe_B0279 [Methylibium petroleiphilum PM1] gi|124262065|gb|ABM97054.1| hypothetical protein Mpe_B0279 [Methylibium petroleiphilum PM1] Length = 285 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 17/114 (14%) Query: 21 PKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIE 77 +K +GQ F + + I E + G TVIE G G L L A I +E Sbjct: 13 ARKSLGQYF-TPRWVAEAIVERHFADLAPGATVIEPSCGDGV---FLHALPAHVNAIGVE 68 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D + + + + ++ D L V + I+ N P++ T Sbjct: 69 IDPHWAEQARRATGR-----TVLLGDFLNVPLPAQVD-----AIVGNPPFHADT 112 >gi|306820892|ref|ZP_07454512.1| possible SAM-dependent methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551006|gb|EFM38977.1| possible SAM-dependent methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 249 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 38 KIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 KI + GS ++E+G G GN+TQ LL G +V+ ++ + I K+ + Sbjct: 28 KIQDLLGSDKEDIKNILELGCGTGNITQRLLEYG-YEVVGVDISGEMLSIAKEKLVDFSD 86 Query: 96 RLEIIQDDALKVDFE 110 ++ +Q D DF+ Sbjct: 87 KVIFMQQDVCDFDFD 101 >gi|262277309|ref|ZP_06055102.1| hypothetical protein HIMB114_0729 [alpha proteobacterium HIMB114] gi|262224412|gb|EEY74871.1| hypothetical protein HIMB114_0729 [alpha proteobacterium HIMB114] Length = 168 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%) Query: 23 KYMGQNFLL------DLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 K QN L N+ KKIA + + VIEIG G G LTQ + + V + Sbjct: 6 KKFIQNPLKICTVKASTNLSAKKIANLINNTENNNVIEIGGGTGALTQF---VKNKDVTI 62 Query: 76 IEKDQQFFPILKDISSQHPNR 96 IE+D + ILK Q+ + Sbjct: 63 IERDYELSEILKTNYPQYTIK 83 >gi|257885222|ref|ZP_05664875.1| glycosyl transferase [Enterococcus faecium 1,231,501] gi|257893565|ref|ZP_05673218.1| glycosyl transferase [Enterococcus faecium 1,231,408] gi|260560523|ref|ZP_05832697.1| glycosyl transferase [Enterococcus faecium C68] gi|261206562|ref|ZP_05921262.1| glycosyl transferase [Enterococcus faecium TC 6] gi|289565472|ref|ZP_06445921.1| glycosyl transferase [Enterococcus faecium D344SRF] gi|293560225|ref|ZP_06676725.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1162] gi|314939151|ref|ZP_07846408.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133a04] gi|314944057|ref|ZP_07850722.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133C] gi|314950060|ref|ZP_07853347.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0082] gi|314952352|ref|ZP_07855360.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133A] gi|314992292|ref|ZP_07857727.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133B] gi|314996501|ref|ZP_07861541.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133a01] gi|257821074|gb|EEV48208.1| glycosyl transferase [Enterococcus faecium 1,231,501] gi|257829944|gb|EEV56551.1| glycosyl transferase [Enterococcus faecium 1,231,408] gi|260073525|gb|EEW61853.1| glycosyl transferase [Enterococcus faecium C68] gi|260079272|gb|EEW66963.1| glycosyl transferase [Enterococcus faecium TC 6] gi|289162801|gb|EFD10652.1| glycosyl transferase [Enterococcus faecium D344SRF] gi|291605797|gb|EFF35231.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1162] gi|313589345|gb|EFR68190.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133a01] gi|313593159|gb|EFR72004.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133B] gi|313595528|gb|EFR74373.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133A] gi|313597351|gb|EFR76196.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133C] gi|313641531|gb|EFS06111.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0133a04] gi|313643595|gb|EFS08175.1| methionine biosynthesis protein MetW [Enterococcus faecium TX0082] Length = 528 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 KI ++ G V+E G G G LT+ L+ +V ++E D++ F + + + Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69 >gi|291288965|ref|YP_003517468.1| hypothetical protein pKF94_053 [Klebsiella pneumoniae] gi|290792096|gb|ADD63422.1| hypothetical protein pKF94-053 [Klebsiella pneumoniae] Length = 196 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95 +++ E + + ++E AG G + Q + R K +E L H Sbjct: 49 RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 104 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + I D L+ E+ + RII N P+N G + Sbjct: 105 EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 137 >gi|255975352|ref|ZP_05425938.1| glycoside transferase [Enterococcus faecalis T2] gi|307281870|ref|ZP_07562085.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0860] gi|255968224|gb|EET98846.1| glycoside transferase [Enterococcus faecalis T2] gi|306503824|gb|EFM73046.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0860] Length = 1047 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDYVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|152976789|ref|YP_001376306.1| methyltransferase type 11 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|229892088|sp|A7GT53|Y3087_BACCN RecName: Full=Uncharacterized methyltransferase Bcer98_3087 gi|152025541|gb|ABS23311.1| Methyltransferase type 11 [Bacillus cytotoxicus NVH 391-98] Length = 212 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 V+E G G GNLT LL G R V IE ++ I K+ P I + D LK D Sbjct: 48 NVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRAIAKEKL---PEGFTITEGDFLKFDV 103 Query: 110 E 110 Sbjct: 104 P 104 >gi|294614666|ref|ZP_06694568.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1636] gi|294619037|ref|ZP_06698532.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1679] gi|291592404|gb|EFF24011.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1636] gi|291594698|gb|EFF26080.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1679] Length = 528 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 KI ++ G V+E G G G LT+ L+ +V ++E D++ F + + + Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69 >gi|293568255|ref|ZP_06679579.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1071] gi|291588967|gb|EFF20791.1| glycosyl transferase, group 2 family protein [Enterococcus faecium E1071] Length = 528 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 KI ++ G V+E G G G LT+ L+ +V ++E D++ F + + + Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69 >gi|307325795|ref|ZP_07604995.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113] gi|306888583|gb|EFN19569.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113] Length = 275 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 6/120 (5%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 + E +G+ G V+E+GAG G T L G R + +E + + + Sbjct: 38 DDLTEMAGTGPGRRVLEVGAGTGKATLPLAERGCR-ITAVELGADMAAVARRNLAGF-ET 95 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 +EI+ D + +++ ++ + +AD P + Q Sbjct: 96 VEIVTADFETWPMPE----EPFDAVVSATAFHWIDPAVRLVKAADALRPGGALAVVATQH 151 >gi|313202286|ref|YP_004040944.1| protein-l-isoaspartate(d-aspartate) o-methyltransferase [Methylovorus sp. MP688] gi|312441602|gb|ADQ85708.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylovorus sp. MP688] Length = 220 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 +I ++ V+EIG G G LT LL A++V+ +E + QH Sbjct: 71 RIVQALEISKTDRVLEIGTGSGYLT-ALLATLAKEVVSLEIHADLSVAAQRKLQQH 125 >gi|329909059|ref|ZP_08274991.1| Protein-L-isoaspartate O-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327546558|gb|EGF31535.1| Protein-L-isoaspartate O-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 217 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ+ L+ ++ + + +V+EIGAG G + LL AR V IE ++ + Sbjct: 57 GQSMLM-PKFEARMLQEAAVKKHESVLEIGAGSGYM-AALLARCARHVTSIEIEEDLQAL 114 Query: 86 LKDISSQHP-NRLEIIQDD 103 +D ++ + +++I D Sbjct: 115 AEDNLCRYGIDNVDVILGD 133 >gi|271969937|ref|YP_003344133.1| protein-L-isoaspartatecarboxylmethyltransferase-like protein [Streptosporangium roseum DSM 43021] gi|270513112|gb|ACZ91390.1| Protein-L-isoaspartatecarboxylmethyltransferase- like protein [Streptosporangium roseum DSM 43021] Length = 385 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 E++G DG V+E+G G G T ++ G+ V +E D +D + + Sbjct: 116 EAAGISDGDKVLEVGTGTGYSTALMCHRLGSHAVTSVEYDPVVAGRARDALTVAGYAPTL 175 Query: 100 IQDDAL 105 + D L Sbjct: 176 VTGDGL 181 >gi|328545938|ref|YP_004306047.1| methyltransferase domain family protein [polymorphum gilvum SL003B-26A1] gi|326415678|gb|ADZ72741.1| Methyltransferase domain family protein [Polymorphum gilvum SL003B-26A1] Length = 204 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDIS 90 + ++IA G +E+G G G +T+ + G R ++ IE + F +L+ Sbjct: 41 PELARRIASFLPVRPGGRYLELGPGTGVVTKAIFDRGVRPEDLVTIEYNADFCRLLRQRY 100 Query: 91 SQHPNRLEIIQDD--ALKVDFEKFFNISS 117 L IQ D AL+ E+ + S Sbjct: 101 PA----LTTIQGDAYALRKTLEQLGPVES 125 >gi|152973735|ref|YP_001338774.1| hypothetical protein KPN_pKPN5p08164 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958517|gb|ABR80544.1| hypothetical protein KPN_pKPN5p08164 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 182 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95 +++ E + + ++E AG G + Q + R K +E L H Sbjct: 40 RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 95 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + I D L+ E+ + RII N P+N G + Sbjct: 96 EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 128 >gi|154686868|ref|YP_001422029.1| YrrT [Bacillus amyloliquefaciens FZB42] gi|229892085|sp|A7Z722|Y2438_BACA2 RecName: Full=Uncharacterized methyltransferase RBAM_024380 gi|154352719|gb|ABS74798.1| YrrT [Bacillus amyloliquefaciens FZB42] Length = 213 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 NIL I L G V+E G G GNLT L +KV +E + D S Sbjct: 35 DNILDSIVA----LSGSNVLEFGPGTGNLTAKLAAAN-KKVFGVEPSPSMRKLAADKLS- 88 Query: 93 HPNRLEIIQDDALKVDFEKF 112 ++ D L+ F Sbjct: 89 --DKAVFSDGDFLEFPAPPF 106 >gi|302679536|ref|XP_003029450.1| hypothetical protein SCHCODRAFT_236703 [Schizophyllum commune H4-8] gi|300103140|gb|EFI94547.1| hypothetical protein SCHCODRAFT_236703 [Schizophyllum commune H4-8] Length = 1048 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 43/260 (16%) Query: 30 LLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 L + N ++IAE+ +G T+IE GPG L++ +L L +V + + + P L Sbjct: 147 LHNANTAREIAEAYIPEGSEGKTIIEAYPGPGALSRAILALPKERVKRLILVENYPPFLD 206 Query: 88 DI--SSQHPNRLEIIQD---------DALK-------VDFEKFFNISSPIRIIANLPYNI 129 + + R+ +++ D LK + ++ + + +LP Sbjct: 207 YLLPLEKLDPRVTVVRASPNAWQTYDDLLKEHLPAEEYKVDWEAGVNERVSFVCSLPMGN 266 Query: 130 GTRL----LFNWISADTWPPFWES--LTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRT 182 + I W + + +E+ R TA + SV+T Sbjct: 267 AGEMFYQQWVRSIPDKQWLFALGRVPMHITMTEELWIRATASVLERTLRSKASVITEATV 326 Query: 183 KAT--MMFDISPH--VFFPSPKVTSTV----------IHFIPHLNPI--PCCLESLKKIT 226 +A + ++ PH FFP+ KV ++ +P I ++ I Sbjct: 327 QAKQVIAHNLRPHHEHFFPARKVKGSLANANAYGTIATTIVPKKWQIIEEGKMDMWDFIV 386 Query: 227 QEAFGKRRKTLRQSLKRLGG 246 + F ++ T+ ++L L Sbjct: 387 RNMFNRKASTVDKALPYLAP 406 >gi|326202224|ref|ZP_08192094.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] gi|325988019|gb|EGD48845.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] Length = 274 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEII 100 G DG+ ++E G+GPG +T+ +L + +E D + S+ PN+ ++I Sbjct: 42 GLSDGMAIVESGSGPGFITEKILKRFPNVNITAVEIDPLLVDYARKYLSEQCLPNKYQVI 101 Query: 101 QDDALKVDFEK-FFNISSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLTLLFQKEV 158 Q ++ D + ++ + ++ +LP + R + + F ++ + Sbjct: 102 QKSIMETDLPENSYDFAITRLVLEHLPNPVKAVREIVRILKPGGKAIFVDN-------DF 154 Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMM 187 I A N L +A Sbjct: 155 EMHIMAYPNVTDLREL---YNSYCQARYA 180 >gi|223985109|ref|ZP_03635205.1| hypothetical protein HOLDEFILI_02510 [Holdemania filiformis DSM 12042] gi|223962931|gb|EEF67347.1| hypothetical protein HOLDEFILI_02510 [Holdemania filiformis DSM 12042] Length = 260 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 V+EIG G G T +L G R + +E Q + + S +P+ ++ Sbjct: 39 LTSDSEVLEIGIGTGQATTPILKTGCR-LTAVELGDQLAALTRKKFSDYPD-FTVVTSAF 96 Query: 105 LKVDFEK-FFNISSPIRIIANLPYNIGTRLLFNWI----------SADTWPPFWESLTLL 153 + + F++ +P IG ++ + + E+L Sbjct: 97 QDYESPENRFDLIYSAAAFHWIPEEIGYPKVYALLKPGGVFARFAKHGNYRQSNEALYEE 156 Query: 154 FQKEVGERIT 163 QK + + Sbjct: 157 IQKVYAQYMA 166 >gi|149176088|ref|ZP_01854704.1| hypothetical protein PM8797T_29178 [Planctomyces maris DSM 8797] gi|148844955|gb|EDL59302.1| hypothetical protein PM8797T_29178 [Planctomyces maris DSM 8797] Length = 225 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 51 VIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 V+EIG G G +T+ ++ ++ ++E + +F IL EI A+ Sbjct: 45 VLEIGPGTGAVTRQIVKQIRPGDQLDLVELNDKFVEILHKRFDTERGFQEIKHQTAIHNC 104 Query: 109 FEKFFNISSPIRII------ANLPYNIGTRLL---FNWISADTWPPFWESLTLLFQKEVG 159 + + + I N P + + + F + ++E + + ++V Sbjct: 105 PLQDYGAAEEYDYIVSGLPLNNFPTELVSDIFKAYFRLLKPGGVLSYFEYMYVRPVRKVV 164 >gi|295113349|emb|CBL31986.1| Methionine biosynthesis protein MetW. [Enterococcus sp. 7L76] Length = 218 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|257082122|ref|ZP_05576483.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis E1Sol] gi|256990152|gb|EEU77454.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis E1Sol] Length = 1047 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|239816693|ref|YP_002945603.1| methyltransferase type 11 [Variovorax paradoxus S110] gi|239803270|gb|ACS20337.1| Methyltransferase type 11 [Variovorax paradoxus S110] Length = 225 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQ L + ++ + +V+EIG G G + LL A +V+ +E D Sbjct: 65 GQVML-SPKVEARMLQDLHVQKHESVLEIGTGSGFM-AALLAHRAAQVLSLEIDPALAAR 122 Query: 86 LKDISSQHP-NRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNI 129 + Q+ +E+ D A+ + F++ +A +P N+ Sbjct: 123 AAETLRQNGVANVEVRNADGAVPLPSGPSFDVIVLSGSVARIPQNL 168 >gi|315172790|gb|EFU16807.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX1346] Length = 1047 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|256956572|ref|ZP_05560743.1| glycosyl transferase [Enterococcus faecalis DS5] gi|256947068|gb|EEU63700.1| glycosyl transferase [Enterococcus faecalis DS5] gi|315035728|gb|EFT47660.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0027] Length = 1047 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|256853634|ref|ZP_05558999.1| glycosyl transferase [Enterococcus faecalis T8] gi|307292439|ref|ZP_07572295.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0411] gi|256710577|gb|EEU25620.1| glycosyl transferase [Enterococcus faecalis T8] gi|306496568|gb|EFM66129.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0411] gi|315028181|gb|EFT40113.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX4000] Length = 1047 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|256617241|ref|ZP_05474087.1| glycosyl transferase [Enterococcus faecalis ATCC 4200] gi|307277285|ref|ZP_07558389.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX2134] gi|256596768|gb|EEU15944.1| glycosyl transferase [Enterococcus faecalis ATCC 4200] gi|306506215|gb|EFM75381.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX2134] Length = 1047 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|315149167|gb|EFT93183.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0012] Length = 1047 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|307286612|ref|ZP_07566704.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0109] gi|306502323|gb|EFM71604.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0109] gi|315164328|gb|EFU08345.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX1302] Length = 1047 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|260072677|gb|ACX30574.1| protein-L-isoaspartate carboxylmethyltransferase [uncultured SUP05 cluster bacterium] gi|269468436|gb|EEZ80101.1| protein-L-isoaspartate carboxylmethyltransferase [uncultured SUP05 cluster bacterium] Length = 217 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-FPILKD 88 +L I ++ ++ V+E+G G G LT ++ L + + IE D+ + Sbjct: 60 MLSPKIEGRLLDALNIQKDENVLEVGTGSGYLTAVISKLC-KSITSIEIDEDLSVSAQEK 118 Query: 89 ISSQHPNRLEIIQDDALKVDFEKFF 113 ++S + N ++ DA K F Sbjct: 119 LNSLNINNTQLEVGDASKGWSSNDF 143 >gi|332284248|ref|YP_004416159.1| methyltransferase type 12 [Pusillimonas sp. T7-7] gi|330428201|gb|AEC19535.1| methyltransferase type 12 [Pusillimonas sp. T7-7] Length = 220 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 14/111 (12%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92 + ++A +IE+G G G +T+ LL G +++V+E +F L+ Sbjct: 47 LAHRMAREVAHYKDGLIIELGPGTGVVTKALLKQGVAPERLLVVEYSNRFVQRLRKQFPH 106 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRII------ANLPYNIGTRLLFNW 137 + I+ +A D + + I +LP + ++ W Sbjct: 107 ----VTIVHGNA--ADLCQIVPKGVKVSAIVSSLPLCSLPEAVTQSIVQQW 151 >gi|78486012|ref|YP_391937.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thiomicrospira crunogena XCL-2] gi|78364298|gb|ABB42263.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thiomicrospira crunogena XCL-2] Length = 215 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 I +I ++ + + +V+E+G G G T LL A +V +E FP L++I+ Sbjct: 63 PRIEARILQALDTAENESVLEVGTGSGY-TTALLAKSANEVTTVEI----FPSLQEIAKT 117 Query: 93 HPNRLEIIQ---DDA 104 N I DA Sbjct: 118 RLNDFNNIHFEQGDA 132 >gi|255597931|ref|XP_002536886.1| conserved hypothetical protein [Ricinus communis] gi|223518211|gb|EEF25497.1| conserved hypothetical protein [Ricinus communis] Length = 430 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Query: 24 YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73 ++GQ N LLD N ++ + G V+E+G G G L+ A KV Sbjct: 141 HLGQFIPLHYHHNMLLDANRMRNFKAAIDAVVFKGARVLELGGGTGVLSCF-AAAHASKV 199 Query: 74 IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNI 115 +E + + + + + +++E++ DA + + ++ Sbjct: 200 YCVEFNPDMVAESRRLLAMNAQGHKVEVVHADAFEYLPPEPVDV 243 >gi|150017113|ref|YP_001309367.1| ribosomal RNA adenine dimethylase [Clostridium beijerinckii NCIMB 8052] gi|149903578|gb|ABR34411.1| ribosomal RNA adenine dimethylase [Clostridium beijerinckii NCIMB 8052] Length = 185 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDI 89 + K+ E L+ ++E G G G T+ +L I IE ++ F+ ILK+ Sbjct: 24 SEKLAHKMVEDINFLNASCIVEYGPGTGVFTEKILDKKKDSTIFIAIEYNEDFYKILKEK 83 Query: 90 SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 N +I D A LK K+ + ++ + + +S Sbjct: 84 FKNRTN-FVLINDSAENLKEHLNKYNIDKVDYIVSGLPFASLPDSMSKSILSVTKEILKG 142 Query: 148 ESLTLLFQKEVGER 161 + + FQ + + Sbjct: 143 HGVFITFQYTLLKI 156 >gi|307944664|ref|ZP_07660003.1| FkbM family methyltransferase [Roseibium sp. TrichSKD4] gi|307772091|gb|EFO31313.1| FkbM family methyltransferase [Roseibium sp. TrichSKD4] Length = 224 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 16/83 (19%) Query: 31 LDLN-ILKKIAESSG---------------SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 LD N + KI ++ G ++EIGAG G +T +L + KV Sbjct: 13 LDENEVAGKIVDALLNKTYESDEAYCVKNLVKPGDRILEIGAGMGFITTILSQIEDVKVW 72 Query: 75 VIEKDQQFFPILKDISSQHPNRL 97 + + +LK ++ + N + Sbjct: 73 SFDANPALIELLKRTATINNNNV 95 >gi|15920361|ref|NP_376030.1| L-isoaspartate O-methyltransferase [Sulfolobus tokodaii str. 7] gi|15621143|dbj|BAB65139.1| 211aa long hypothetical protein-L-isoaspartate O-methyltransferase [Sulfolobus tokodaii str. 7] Length = 211 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNR 96 K+ + V+EIG G G T ++ +G + V +E D++ F I K ++ Sbjct: 66 KMLDLLELKKEDKVLEIGTGIGYYTALIAEIVGGKNVYTVEYDEEMFNIAKQNLKEY--N 123 Query: 97 LEIIQDD 103 + +I D Sbjct: 124 VNLIFGD 130 >gi|329902392|ref|ZP_08273096.1| hypothetical protein IMCC9480_229 [Oxalobacteraceae bacterium IMCC9480] gi|327548807|gb|EGF33441.1| hypothetical protein IMCC9480_229 [Oxalobacteraceae bacterium IMCC9480] Length = 301 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 13/104 (12%) Query: 24 YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73 Y+GQ N L+D +K E+ G V+E+G G G L+ A KV Sbjct: 11 YLGQFIPLHYHHNMLMDQRRMKNFREAISQVVFPGAKVLELGGGTGVLS-FFAAATAEKV 69 Query: 74 IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNI 115 +E + + + ++ H +++E+IQ DA + ++ Sbjct: 70 WCVEFNPDMVDEARRLLARNAHGHKIEVIQADAFAYLPPEPVDV 113 >gi|240167928|ref|ZP_04746587.1| hypothetical protein MkanA1_01340 [Mycobacterium kansasii ATCC 12478] Length = 190 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 + G +EIG G G ++L+ ++ +E D L+++ + +R II Sbjct: 30 ADVDLGDNTLEIGPGYGAFLRILVDKTP-QLTAVEIDAPMAQRLQEL---YGDRARIIIG 85 Query: 103 D 103 D Sbjct: 86 D 86 >gi|324998850|ref|ZP_08119962.1| methylase involved in ubiquinone/menaquinone biosynthesis [Pseudonocardia sp. P1] Length = 208 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 18/160 (11%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 V+E+G G G T+++L A +V I+ D K S + R+ + Sbjct: 32 ALPAEARVLEVGCGAGYGTELILRRFATARVDAIDLDPAMVTRAKRRLSGYGGRVRLATG 91 Query: 103 D------ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 D AL + + + + + + + W F E Sbjct: 92 DMTDLRAALDAEDGSYDAVFDFAIVHHVPDWRAAVAEIVRVLKPGGWFYFDEVTAAALAT 151 Query: 157 EVGERITAQKNSPHYGR-----------LSVLTGWRTKAT 185 + + L V WRT+ Sbjct: 152 RGYRWLFDHPTEDRFTASEFVAELERQGLQVGARWRTRVR 191 >gi|167619121|ref|ZP_02387752.1| hypothetical protein BthaB_22641 [Burkholderia thailandensis Bt4] Length = 214 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 D VIE+GAG G T+ LL+ G A +++++E D F L+ L ++ Sbjct: 39 PGDSARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNM 94 Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126 DA ++ F + +++ LP Sbjct: 95 DAAELGITHGLFGDARASTVVSGLP 119 >gi|154244312|ref|YP_001415270.1| phospholipid N-methyltransferase [Xanthobacter autotrophicus Py2] gi|154158397|gb|ABS65613.1| phospholipid N-methyltransferase [Xanthobacter autotrophicus Py2] Length = 205 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 13/90 (14%) Query: 27 QNFLL-------DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIE 77 QN L + K +A VIE+G G G +T+ L+ G ++ +IE Sbjct: 33 QNPLKTGAVAPSSPALAKMMASYLDPKQDGPVIELGPGTGPVTKALIQRGFAPERLFLIE 92 Query: 78 KDQQFFPILKDISSQHPNRLEIIQDDALKV 107 + +F +L+ +I DA + Sbjct: 93 YNPEFCALLRLRYPGA----TVINGDAYTL 118 >gi|281356970|ref|ZP_06243460.1| ribosomal RNA adenine methylase transferase [Victivallis vadensis ATCC BAA-548] gi|281316528|gb|EFB00552.1| ribosomal RNA adenine methylase transferase [Victivallis vadensis ATCC BAA-548] Length = 191 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92 + + +A G + V+E+G G G +T+ L+ K++ +E D+ LK + Sbjct: 27 LCRAMASEIGVENAGLVVELGPGTGVITRELVRRLPENGKLLAVELDELLCEHLKRTFPE 86 Query: 93 HPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNI 129 +EI D A + K + +++ LP+ + Sbjct: 87 ----VEICHDSASNLGGILKERGLPPVNAVVSGLPWAV 120 >gi|302542583|ref|ZP_07294925.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302460201|gb|EFL23294.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 369 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 ++ G+ V+EIG G G +L GA V +E D + ++ + Sbjct: 104 AAADVRPGMRVLEIGTGTGYNAALLCERAGAVNVTSVEVDAGLAEVAARRLAEAGYHPRV 163 Query: 100 IQDD 103 + D Sbjct: 164 VAAD 167 >gi|152973677|ref|YP_001338718.1| hypothetical protein KPN_pKPN4p07108 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|294496753|ref|YP_003560446.1| hypothetical protein pKpQIL_p069 [Klebsiella pneumoniae] gi|150958459|gb|ABR80487.1| hypothetical protein KPN_pKPN4p07108 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|293339462|gb|ADE44016.1| hypothetical protein [Klebsiella pneumoniae] Length = 187 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95 +++ E + + ++E AG G + Q + R K +E L H Sbjct: 40 RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 95 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + I D L+ E+ + RII N P+N G + Sbjct: 96 EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 128 >gi|324120131|ref|YP_004249892.1| hypothetical protein pc15-k-041 [Klebsiella pneumoniae] gi|323388259|gb|ADX60408.1| hypothetical protein pc15-k-041 [Klebsiella pneumoniae] Length = 187 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95 +++ E + + ++E AG G + Q + R K +E L H Sbjct: 40 RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 95 Query: 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 + I D L+ E+ + RII N P+N G + Sbjct: 96 EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 128 >gi|329769164|ref|ZP_08260584.1| hypothetical protein HMPREF0433_00348 [Gemella sanguinis M325] gi|328839383|gb|EGF88961.1| hypothetical protein HMPREF0433_00348 [Gemella sanguinis M325] Length = 215 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 13/146 (8%) Query: 35 ILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 I+ KI + ++EIG G + L KV IE+D + + I K Sbjct: 37 IIDKIGIRFLIQMLKIKKAKNLLEIGTAIGYTSIKLAETIGCKVTTIERDDKMYNIAKSN 96 Query: 90 SSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 + +++ ++ DAL++ E N I I +R F P F Sbjct: 97 VEKRDLTDKITLLHADALELQDEVVRNAPYDIVFIDGAKSQ--SRKFFELYE----PYFA 150 Query: 148 ESLTLLFQKEVGERITAQKNSPHYGR 173 E + +L + + + A + + R Sbjct: 151 EDVVVLTDNVLFKGMVADPSIIRHSR 176 >gi|289548934|ref|YP_003473922.1| methyltransferase small [Thermocrinis albus DSM 14484] gi|289182551|gb|ADC89795.1| methyltransferase small [Thermocrinis albus DSM 14484] Length = 238 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101 G TV+++GAG G L+ + + V+ +E+D +L+ +Q +++ +++ Sbjct: 37 GIKRTSTVVDLGAGFGALSVLTALRYSCHVLAVERDSLMLELLRYNVKVNQLQDKVSVVE 96 Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGT 131 D D E F + +I N P+ Sbjct: 97 GDV--RDVEHFLKRYTADAVIVNPPFYPAH 124 >gi|227818817|ref|YP_002822788.1| L-isoaspartyl protein carboxyl methyltransferase [Sinorhizobium fredii NGR234] gi|36959075|gb|AAQ87500.1| Protein-L-isoaspartate O-methyltransferase [Sinorhizobium fredii NGR234] gi|227337816|gb|ACP22035.1| L-isoaspartyl protein carboxyl methyltransferase protein [Sinorhizobium fredii NGR234] Length = 653 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 I+ ++AE++ +V+E+GAG G +L L A +V IE+ L + +S Sbjct: 64 PYIVARMAEAAEIEPDDSVLEVGAGSGYAAAVLSHL-AERVFAIER----HRTLAETASA 118 Query: 93 HPNRLEIIQDDALKVDFEKFFNISSPIRII 122 +L D D K + +P I Sbjct: 119 RLLKLRRSNVDVRASDGTKGWPERAPFDAI 148 >gi|167581043|ref|ZP_02373917.1| hypothetical protein BthaT_23042 [Burkholderia thailandensis TXDOH] gi|257138354|ref|ZP_05586616.1| hypothetical protein BthaA_03947 [Burkholderia thailandensis E264] Length = 214 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 D VIE+GAG G T+ LL+ G A +++++E D F L+ L ++ Sbjct: 39 PGDSARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNM 94 Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126 DA ++ F + +++ LP Sbjct: 95 DAAELGITHGLFGDARASTVVSGLP 119 >gi|190890143|ref|YP_001976685.1| phospholipid N-methyltransferase [Rhizobium etli CIAT 652] gi|190695422|gb|ACE89507.1| phospholipid N-methyltransferase protein [Rhizobium etli CIAT 652] Length = 222 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93 L +I S + +IE+G G G T+ LL G + + +IE +F L+ Sbjct: 34 LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFIDALQARFPAA 93 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISA 140 ++Q DA + F+ +I+ LP ++ R + + ++ Sbjct: 94 ----RVLQMDAAHLAQADIFDDEPVGAVISGLPLLSMSPRKIASILAG 137 >gi|152981849|ref|YP_001353643.1| hypothetical protein mma_1953 [Janthinobacterium sp. Marseille] gi|151281926|gb|ABR90336.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 310 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 13/104 (12%) Query: 24 YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73 Y+GQ N L+D + + G V+E+G G G L+ A KV Sbjct: 11 YLGQFIPVHYHHNMLMDNRRMSGFKAAITHLVAPGAKVLELGGGTGVLSWF-AAARAEKV 69 Query: 74 IVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNI 115 +E + K +Q+ N R+E+IQ DA + + ++ Sbjct: 70 WCVEYNPDLVAEAKRFLAQNVNGERVEVIQGDAFEYLPPEPVDV 113 >gi|256963460|ref|ZP_05567631.1| glycosyl transferase [Enterococcus faecalis HIP11704] gi|256953956|gb|EEU70588.1| glycosyl transferase [Enterococcus faecalis HIP11704] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWGEYFAGKTFDYIV 93 >gi|209547713|ref|YP_002279630.1| methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533469|gb|ACI53404.1| Methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 50/210 (23%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93 L +I S + +IE+G G G T+ LL G + + +IE +F L Sbjct: 34 LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFITALHARFPTA 93 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLTL 152 ++Q DA + F +++ LP ++ R + + ++ Sbjct: 94 ----RVLQMDAAHLAHADIFEGEPVGAVVSGLPLLSMSPRKIASILAGAFA--------- 140 Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT---------S 203 + Y F P P P + Sbjct: 141 ----------YMRPGGAVYQ---------------FTYGPRCPVPRPILDRLGLKAVRIG 175 Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKR 233 + +P + ++++E F R Sbjct: 176 GTVRNLPPASVYRISRRKPLELSRERFSYR 205 >gi|297160902|gb|ADI10614.1| protein-L-isoaspartate carboxylmethyltransferase [Streptomyces bingchenggensis BCW-1] Length = 417 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 +++ + E+ D TV+EIGAG G N + LG+ V+ ++ D + K Sbjct: 91 PSLMAHMLEALDVQDADTVLEIGAGTGYNAALLSHRLGSDNVVTVDVDPDLVAVAKTRLR 150 Query: 92 QHPNRLEIIQDD 103 + ++ D Sbjct: 151 EAGYEPTLVVGD 162 >gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate O-methyltransferase [Herbaspirillum seropedicae SmR1] gi|124483492|emb|CAM32619.1| Protein-L-isoaspartate O-methyltransferase protein [Herbaspirillum seropedicae] gi|300072609|gb|ADJ62008.1| protein-L-isoaspartate O-methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 221 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 G+N L I +I + + V+EIGAG G + LL AR V +E + + Sbjct: 57 GENMLA-PKIEARILQEANVKKHEYVLEIGAGSGYM-AALLAHKARHVTTVEISPELKAL 114 Query: 86 LKDISSQH 93 + S + Sbjct: 115 AERNLSDY 122 >gi|73540455|ref|YP_294975.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia eutropha JMP134] gi|72117868|gb|AAZ60131.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia eutropha JMP134] Length = 217 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 GQN L + +I + V+EIGAG G + LL AR V+ ++ P Sbjct: 57 GQNMLP-PRVEARILQELAVRKHENVLEIGAGSGYM-AALLANRARHVLTVDI----VPE 110 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 L ++ Q+ + D + + + ++P +I Sbjct: 111 LVTLARQNLANAGVTNVDVAEGNAADGWAAAAPYDVIC 148 >gi|209522113|ref|ZP_03270761.1| conserved hypothetical protein [Burkholderia sp. H160] gi|209497449|gb|EDZ97656.1| conserved hypothetical protein [Burkholderia sp. H160] Length = 165 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 22/164 (13%) Query: 49 ITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 ++E+GAG G +T+ L+ + +++V E ++ L+ R E+I A Sbjct: 9 DAIVEVGAGTGAITEALVKRNSEARLVVFELSEKLADGLQARFP----RAEVIAG-AFHE 63 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 + N+ +++ LP F + T P E+LT + + + + Sbjct: 64 NVSALHNLPPKTVVVSALP--------FRSLPPRTVRPTVEALTDVLRVDQARCLV---Q 112 Query: 168 SPHYGRLSVLTGWRTKATMMFDI-----SPHVFFPSPKVTSTVI 206 + R + + +V+ K+ ++ Sbjct: 113 FSYRSRAPFTAPADFSWRKVCTVWRNAPPANVWELHGKLDVDLM 156 >gi|307272367|ref|ZP_07553623.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0855] gi|306510921|gb|EFM79935.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0855] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|257084737|ref|ZP_05579098.1| glycosyl transferase [Enterococcus faecalis Fly1] gi|256992767|gb|EEU80069.1| glycosyl transferase [Enterococcus faecalis Fly1] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|229545301|ref|ZP_04434026.1| family 2 glycosyl transferase [Enterococcus faecalis TX1322] gi|229309651|gb|EEN75638.1| family 2 glycosyl transferase [Enterococcus faecalis TX1322] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|254470884|ref|ZP_05084287.1| ribosomal RNA adenine methylase transferase [Pseudovibrio sp. JE062] gi|211960026|gb|EEA95223.1| ribosomal RNA adenine methylase transferase [Pseudovibrio sp. JE062] Length = 155 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNR 96 +AE V+E+G G G +T+ +L G K + +E F L + Sbjct: 1 MAEFVPVQSQNPVLELGPGTGPVTKAILEAGISKERLTCLEYSPDFCEHLSEKFEG---- 56 Query: 97 LEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNW 137 L ++Q DA + +S ++++LP I + F Sbjct: 57 LNVVQGDAYNMHPSLGHIEPNSLCAVVSSLPL-ISRPMEFRL 97 >gi|329569830|gb|EGG51589.1| glycosyltransferase, group 2 family protein [Enterococcus faecalis TX1467] Length = 972 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|315161856|gb|EFU05873.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0645] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|315146146|gb|EFT90162.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX2141] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|315033460|gb|EFT45392.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0017] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|294779037|ref|ZP_06744450.1| methionine biosynthesis protein MetW [Enterococcus faecalis PC1.1] gi|307270359|ref|ZP_07551664.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX4248] gi|294453867|gb|EFG22256.1| methionine biosynthesis protein MetW [Enterococcus faecalis PC1.1] gi|306513267|gb|EFM81894.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX4248] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|257090451|ref|ZP_05584812.1| glycosyl transferase [Enterococcus faecalis CH188] gi|312903801|ref|ZP_07762974.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0635] gi|256999263|gb|EEU85783.1| glycosyl transferase [Enterococcus faecalis CH188] gi|310632875|gb|EFQ16158.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0635] gi|315578158|gb|EFU90349.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0630] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|257079498|ref|ZP_05573859.1| glycosyl transferase [Enterococcus faecalis JH1] gi|256987528|gb|EEU74830.1| glycosyl transferase [Enterococcus faecalis JH1] Length = 1041 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 3 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 60 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 61 STDA------FYGNIDENDWVEYFAGKTFDYIV 87 >gi|256961450|ref|ZP_05565621.1| glycosyl transferase [Enterococcus faecalis Merz96] gi|293382812|ref|ZP_06628733.1| glycosyl transferase, group 2 family [Enterococcus faecalis R712] gi|293387979|ref|ZP_06632512.1| glycosyl transferase, group 2 family [Enterococcus faecalis S613] gi|312905895|ref|ZP_07764909.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO 512] gi|312908957|ref|ZP_07767820.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO 516] gi|256951946|gb|EEU68578.1| glycosyl transferase [Enterococcus faecalis Merz96] gi|291079803|gb|EFE17167.1| glycosyl transferase, group 2 family [Enterococcus faecalis R712] gi|291082635|gb|EFE19598.1| glycosyl transferase, group 2 family [Enterococcus faecalis S613] gi|310628062|gb|EFQ11345.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO 512] gi|311290741|gb|EFQ69297.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO 516] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|300860184|ref|ZP_07106271.1| methionine biosynthesis protein MetW [Enterococcus faecalis TUSoD Ef11] gi|300849223|gb|EFK76973.1| methionine biosynthesis protein MetW [Enterococcus faecalis TUSoD Ef11] Length = 1047 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 31 LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 D + + KI + + V+E G G G +T L+ +V ++E D++ + + Sbjct: 9 TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66 Query: 90 SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 S+ + + D+ ++F + I+ Sbjct: 67 STDA------FYGNIDENDWVEYFAGKTFDYIV 93 >gi|229549536|ref|ZP_04438261.1| group 2 family glycosyl transferase [Enterococcus faecalis ATCC 29200] gi|255972239|ref|ZP_05422825.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis T1] gi|312953327|ref|ZP_07772169.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0102] gi|229305354|gb|EEN71350.1| group 2 family glycosyl transferase [Enterococcus faecalis ATCC 29200] gi|255963257|gb|EET95733.1| glycosyl transferase, group 2 fam