RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase
[Candidatus Liberibacter asiaticus str. psy62]
(284 letters)
>1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine
dimethyltransferase, rRNA modification, transferase,
translation; 2.10A {Escherichia coli} SCOP: c.66.1.24
Length = 252
Score = 221 bits (564), Expect = 1e-58
Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 8/256 (3%)
Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
QNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ L
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGE-RLDQLTVIELDRDLAARL 59
Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
+ P L I Q DA+ +F + + P+R+ NLPYNI T L+F+ ++
Sbjct: 60 QTHPFLGPK-LTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHL---FSYTD 115
Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
+ + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV S V
Sbjct: 116 AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAV 175
Query: 206 IHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
+ +PH + L +IT EAF +RRKT+R SL L +L GI+ +RAEN
Sbjct: 176 VRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAEN 235
Query: 264 LSIEDFCRITNILTDN 279
+S+ +C++ N L +N
Sbjct: 236 ISVAQYCQMANYLAEN 251
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly
S-adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding; HET: AMP; 1.60A {Methanocaldococcus
jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 199 bits (506), Expect = 7e-52
Identities = 80/275 (29%), Positives = 122/275 (44%), Gaps = 28/275 (10%)
Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE
Sbjct: 22 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEI 80
Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
D+ P + + N +EII DALKVD K +++ANLPY I + + F
Sbjct: 81 DKSLEPYANKLKELYNN-IEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKL- 134
Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
++ L++Q E +R+ A + YGRLSV R ++ + P F+P
Sbjct: 135 ----IKRGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPK 190
Query: 199 PKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGE---------- 247
PKV S ++ P+ E+ + F R K++R++L E
Sbjct: 191 PKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKK 250
Query: 248 ------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
N + N + LS++D ++N
Sbjct: 251 ILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEF 285
>3fyd_A Probable dimethyladenosine transferase; rossman fold, rRNA
methylase, ribosomal assembly, methyltransferase,
RNA-binding; 1.75A {Methanocaldococcus jannaschii} PDB:
3fyc_A*
Length = 263
Score = 173 bits (440), Expect = 4e-44
Identities = 76/267 (28%), Positives = 117/267 (43%), Gaps = 28/267 (10%)
Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
Q FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ P
Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYA 59
Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
+ + N +EII DALKVD K +++ANLPY I + + F
Sbjct: 60 NKLKELYNN-IEIIWGDALKVDLNKLDFN----KVVANLPYQISSPITFKL-----IKRG 109
Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
++ L++Q E +R+ A + YGRLSV R ++ + P F+P PKV S ++
Sbjct: 110 FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIV 169
Query: 207 HFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE----------------NL 249
P+ E+ + F R K++R++L E N
Sbjct: 170 KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNT 229
Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
+ N + LS++D ++N
Sbjct: 230 NSEIKNLINEKVFKLSVKDIVNLSNEF 256
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 169 bits (430), Expect = 5e-43
Identities = 52/257 (20%), Positives = 94/257 (36%), Gaps = 22/257 (8%)
Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
QNF+ + + KI + + + EIG+G G+ T L+ V IE D
Sbjct: 4 KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDH 62
Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
+ ++ H N +++ D L+ F K +I N+PYNI T ++ +
Sbjct: 63 KLCKTTENKLVDHDN-FQVLNKDILQFKFPKN----QSYKIFGNIPYNISTDIIRKIVFD 117
Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
+ L+ + +R+ L++ +++ + F P PK
Sbjct: 118 SIADEIY----LIVEYGFAKRLL-----NTKRSLALFLMAEVDISILSMVPREYFHPKPK 168
Query: 201 VTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
V S++I + I + + K K + + N L AGI+
Sbjct: 169 VNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKI---FTKNQFNNSLKHAGID--- 222
Query: 260 RAENLSIEDFCRITNIL 276
N+S E F + N
Sbjct: 223 DLNNISFEQFLSLFNSY 239
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 162 bits (411), Expect = 6e-41
Identities = 69/286 (24%), Positives = 108/286 (37%), Gaps = 36/286 (12%)
Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
+ GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D
Sbjct: 16 NLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDS 74
Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
+ +K + + AN+PY I + L+F
Sbjct: 75 RMISEVKKRCLYEGYNNLEVYEG-----DAIKTVFPKFDVCTANIPYKISSPLIFKL--- 126
Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
+ P ++ L+FQKE ER+ A +Y RL++ K T + +++ F P PK
Sbjct: 127 ISHRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPK 186
Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL- 259
V S ++ IP + + + + F ++RKTL KR N+L
Sbjct: 187 VDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKNWCTL 246
Query: 260 --------------------------RAENLSIEDFCRITNILTDN 279
R+ NL DF ++
Sbjct: 247 NKQVPVNFPFKKYCLDVLEHLDMCEKRSINLDENDFLKLLLEFNKK 292
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, antibiotic resistance,
methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB:
3ftc_A 3fte_A 3ftf_A*
Length = 249
Score = 159 bits (403), Expect = 6e-40
Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 16/263 (6%)
Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
+ KK GQ+ L+ +LKKIAE +G TV+E+G G GNLT++LL +K+ VIE
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
D++ LK I RLE+I +DA K F ++++ NLPYN+ + ++ N
Sbjct: 63 DREMVENLKSI---GDERLEVINEDASKFPFCSLGK---ELKVVGNLPYNVASLIIENT- 115
Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
+ QKEV E++ G LSV + + P F P
Sbjct: 116 --VYNKDCVPLAVFMVQKEVAEKLQ---GKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPP 170
Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
PKV S VI + + L++ KK + F RRK LR+ + E LL +AGI +
Sbjct: 171 PKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINPD 226
Query: 259 LRAENLSIEDFCRITNILTDNQD 281
R E LS+EDF ++ ++ D+ +
Sbjct: 227 ARVEQLSLEDFFKLYRLIEDSGE 249
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus
HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 155 bits (392), Expect = 1e-38
Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 19/273 (6%)
Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
S++ +L + + K GQNFL+ L++I E++ G V E+G G G LT+ LL
Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLE- 66
Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
+V IEKD + P+L++ S P RL + ++ ++ANLPY+
Sbjct: 67 AGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL-----LVANLPYH 121
Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
I T L+ + + L L QKEV ER+TA+ +P YG L++ A +F
Sbjct: 122 IATPLVTRLL----KTGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLF 177
Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
D+ P FFP PKV S+++ P L ++ + AFGKRRKTL +L G
Sbjct: 178 DLPPGAFFPPPKVWSSLVRLTPTGALDDPGLF---RLVEAAFGKRRKTLLNALAAAGYPK 234
Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
E L G+ +RAE L +E F R+ L
Sbjct: 235 ARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 148 bits (374), Expect = 1e-36
Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 19/265 (7%)
Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
+GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D +
Sbjct: 3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPR 61
Query: 82 FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
L ++L+++ D LK D F +ANLPY I + +F
Sbjct: 62 LVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTC------VANLPYQISSPFVFKL-- 113
Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P P
Sbjct: 114 -LLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPP 172
Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAG 254
KV S+V+ P P P + + + F ++ KTL + K + N
Sbjct: 173 KVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCS 232
Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
+ + E+ SI D I ILT
Sbjct: 233 VHNIIIPEDFSIADK--IQQILTST 255
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 126 bits (317), Expect = 5e-30
Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 22/259 (8%)
Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
QNFL +L +I + + TV EIG G G+LT L + ++V IE D
Sbjct: 3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDS 61
Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
F + + + +I D L+ F +I+ N+PY++ T+++ +
Sbjct: 62 HLFNLSSEKLKLNTRV-TLIHQDILQFQFPNKQR----YKIVGNIPYHLSTQIIKKVVFE 116
Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
+ + F K + + L +L + + + F P PK
Sbjct: 117 SRASDIYLIVEEGFYK---------RTLDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPK 167
Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
V S +I H +P L + + + L + + A +
Sbjct: 168 VNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQF---HQAMKHAKVN--- 221
Query: 260 RAENLSIEDFCRITNILTD 278
++ E I N
Sbjct: 222 NLSTITYEQVLSIFNSYLL 240
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.05A {Pyrococcus furiosus dsm 3638}
Length = 373
Score = 44.5 bits (104), Expect = 3e-05
Identities = 14/126 (11%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 17 YKIIPKKYMGQNFLLDLNILKKIA--ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
+ P Q ++ + ++ + G L+ + +G ++L+ +++
Sbjct: 140 DRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSGLPKRIA 199
Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGT 131
V++ D++ ++ + N + + D K + + I + P +
Sbjct: 200 VLDIDERLTKFIEKAA----NEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA 255
Query: 132 RLLFNW 137
F
Sbjct: 256 IRAFVG 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.8 bits (103), Expect = 5e-05
Identities = 54/362 (14%), Positives = 101/362 (27%), Gaps = 170/362 (46%)
Query: 4 NNKSHSL---------KTILSHYKIIPKKYMGQNFLLDLNILKKIAES---SGSLDGITV 51
N H+L T++ ++I K Y+ + K + S +G
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELI-KNYITARIMAKRPF-DKKSNSALFRAVGEGNA- 154
Query: 52 IEIGA---GPGNLTQMLLTLGARKVIVIEKDQQFF-----------PILKDI---SSQHP 94
++ A G GN + +F ++ D+ S++
Sbjct: 155 -QLVAIFGGQGN---------------TDD---YFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 95 NRLEIIQDDALKVDFEKFFN---------------------ISSPIRIIANLP------- 126
+ L I+ +D EK F +S PI + P
Sbjct: 196 SEL--IRTT---LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI----SCPLIGVIQL 246
Query: 127 --YNIGTRLL----------FNWI--------------SADTWPPFWES----LTLLFQK 156
Y + +LL D+W F+ S +T+LF
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF- 305
Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH-FIPHLNPI 215
G R + +P+ + +++ + + +
Sbjct: 306 ---------------------IGVRC----------YEAYPNTSLPPSILEDSLENNEGV 334
Query: 216 PCCLESLKKITQEAFGKRRKTLRQSL---KRL------GGENL--------LHQAGIETN 258
P + S+ +TQE L K++ G +NL L+ G+
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY--GLNLT 392
Query: 259 LR 260
LR
Sbjct: 393 LR 394
Score = 39.5 bits (92), Expect = 0.001
Identities = 37/274 (13%), Positives = 76/274 (27%), Gaps = 108/274 (39%)
Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
L L+ ++ Y+ N D++ L A L TL
Sbjct: 84 LNLCLTEFE---NCYLEGN---DIHAL--AA----KLLQENDT--------------TLV 117
Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRL-EIIQDDALKV--------DFEKFFNIS 116
K ++ + + + + + L + + ++ + + +F
Sbjct: 118 KTKELI----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-- 171
Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESL----TLLFQKEVGERITAQKNSPHYG 172
L R L+ T+ L + + + A+K +
Sbjct: 172 -------EL------RDLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEK---VFT 210
Query: 173 R-LSVLTGWRTKATMMFD----ISPHVFFPSPKVTSTVI------HFIPHLNPIPCCLES 221
+ L++L W + D +S + P +I H++ +
Sbjct: 211 QGLNILE-WLENPSNTPDKDYLLSIPISCP-------LIGVIQLAHYV-----VTA---- 253
Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
K+ G LR LK G H G+
Sbjct: 254 --KLL----GFTPGELRSYLKGATG----HSQGL 277
Score = 26.4 bits (58), Expect = 8.2
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 35/137 (25%)
Query: 149 SLTLLFQKEVGERITAQKNSPHYGRL---SVLTGWRTKATMMF-DISPHVFFPSPKVTST 204
+LT+ F E G+RI ++N Y + +++ G + K +F +I+ H ST
Sbjct: 1671 NLTIHFGGEKGKRI--REN---YSAMIFETIVDG-KLKTEKIFKEINEH---------ST 1715
Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG---------GENLLHQAGI 255
F L S + TQ A K + LK G G +L A +
Sbjct: 1716 SYTFRSEKG-----LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 256 ETNLRAENLSIEDFCRI 272
+ A+ +SIE +
Sbjct: 1771 AS--LADVMSIESLVEV 1785
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 41.8 bits (97), Expect = 2e-04
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
M++ + K Y +P+ G + + LKK+ + TV+++G G G
Sbjct: 1 MSLKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKML---PDFNQKTVLDLGCGFGW 57
Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
GA+KV+ I+ ++ K ++
Sbjct: 58 HCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP 90
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 40.8 bits (95), Expect = 4e-04
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 3 MNNKSHSLKTILSHYKII--PKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAG 57
M K+ L+ L + K Y+ Q + D + + G++ G +VI+ G G
Sbjct: 4 MGIKND-LEIRLQKLQQQGNFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTG 61
Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
G L LGA V + D K ++ + + D ++ K+
Sbjct: 62 NGILACGSYLLGAESVTAFDIDPDAIETAK----RNCGGVNFMVADVSEIS-GKYD---- 112
Query: 118 PIRIIANLPYNIGTR 132
I N P+ +
Sbjct: 113 --TWIMNPPFGSVVK 125
>3b3f_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase, catalytic domain, alternative
splicing, chromatin regulator; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A
Length = 341
Score = 40.5 bits (94), Expect = 4e-04
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95
+ I ++ V+++G G G L+ GARK+ +E + S+ +
Sbjct: 36 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 95
Query: 96 RLEIIQDDALKVDFEKFFNI 115
R+ +I +V + +I
Sbjct: 96 RIVVIPGKVEEVSLPEQVDI 115
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 40.4 bits (94), Expect = 5e-04
Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 6/132 (4%)
Query: 36 LKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
L+K + ++G T ++IG+ G T ++L GA+ V ++ L
Sbjct: 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQ---LAWKIRSDE 81
Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
+ + Q + F P ++ + I L+ + + +
Sbjct: 82 RVVVMEQFNFRNAVLADFEQG-RPSFTSIDVSF-ISLDLILPPLYEILEKNGEVAALIKP 139
Query: 155 QKEVGERITAQK 166
Q E G +
Sbjct: 140 QFEAGREQVGKN 151
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, alternative
splicing; 2.55A {Rattus norvegicus}
Length = 480
Score = 40.4 bits (94), Expect = 5e-04
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPN 95
+ I ++ V+++G G G L+ GARK+ +E + S +
Sbjct: 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 207
Query: 96 RLEIIQDDALKVDFEKFFNI 115
R+ +I +V + +I
Sbjct: 208 RIVVIPGKVEEVSLPEQVDI 227
>1or8_A Protein arginine N-methyltransferase 1; protein arginine
methylation, adoMet-dependent methylation, transferase;
HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB:
1orh_A* 1ori_A*
Length = 340
Score = 39.7 bits (92), Expect = 8e-04
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95
+ + V+++G+G G L GARKVI IE +K + +++ +
Sbjct: 47 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDH 106
Query: 96 RLEIIQDDALKVDFE 110
+ II+ +V+
Sbjct: 107 VVTIIKGKVEEVELP 121
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 39.0 bits (89), Expect = 0.001
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
++ GAG G L+ L G KV ++E + P+ I + P +E + L +
Sbjct: 7 ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGI-NIQPAAVEAL--AELGLG 63
Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
+ P + + + T + + I
Sbjct: 64 -PALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQ----YSIHRGELQMILLAAVR 118
Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
G+ +V TG + D + +
Sbjct: 119 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGA 158
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 38.7 bits (89), Expect = 0.001
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
I ++ V+++G G G L+ GA+ VI ++
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI 72
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus}
Length = 185
Score = 38.5 bits (89), Expect = 0.002
Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 19/180 (10%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDAL 105
D V++ G GN T L L + V + +Q +S E+I D
Sbjct: 22 DESIVVDATMGNGNDTAFLAGLSKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80
Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
+D + I NL Y T + L L EVG R+
Sbjct: 81 NLD---HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRL---EVGGRLAIM 134
Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLK 223
H G G K ++ + T+ + + +N P LE L+
Sbjct: 135 IYYGHDG------GDMEKDAVLEYVI---GLDQRVFTAMLYQPLNQINTPPFLVMLEKLQ 185
>2gci_A Probable alpha-methylacyl-COA racemase MCR; COA transferase,
proton transfer, coenzyme A, isomerase; HET: MRR; 1.60A
{Mycobacterium tuberculosis} SCOP: c.123.1.1 PDB:
2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A*
Length = 360
Score = 37.1 bits (85), Expect = 0.004
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 43 SGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77
+G L G+ V+E IG GP +L LGA V+ I+
Sbjct: 2 AGPLSGLRVVELAGIGPGPH-AAMILGDLGAD-VVRID 37
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined
dimer, PSI, protein structure initiative; HET: MSE;
1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A*
1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Length = 428
Score = 37.1 bits (85), Expect = 0.005
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 43 SGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77
S L GI V++ + +GP TQML GA VI IE
Sbjct: 4 STPLQGIKVLDFTGVQSGPS-CTQMLAWFGAD-VIKIE 39
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A
{Mycobacterium tuberculosis H37RV}
Length = 359
Score = 36.4 bits (83), Expect = 0.008
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 42 SSGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77
+ G L G+ VIE IG GP +L LGA V+ +
Sbjct: 3 TGGPLAGVKVIELGGIGPGPH-AGMVLADLGAD-VVRVR 39
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 36.3 bits (83), Expect = 0.008
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 35 ILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
I + IA S S V++ G G T G +VI I+ D + ++ + +
Sbjct: 65 IAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVY 123
Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
+I + + DF + + + P+
Sbjct: 124 GIADKI---EFICGDFLLLASFLKADVVFLSPPW 154
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 35.9 bits (81), Expect = 0.010
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 42 SSGSLDGITVIEIG---AGPGNLTQMLLTLGARKVIVIE 77
G L G+ V+ G AGP QM GA VI IE
Sbjct: 11 KFGPLAGLRVVFSGIEIAGPF-AGQMFAEWGAE-VIWIE 47
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 35.5 bits (80), Expect = 0.015
Identities = 17/165 (10%), Positives = 41/165 (24%), Gaps = 5/165 (3%)
Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
V+ +G GP G + L +V+E+ + + P +E+ + +
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVG-TIGPRSMELFRRWGVAKQI 87
Query: 110 EKFFNISSPIRIIANLPYNIG---TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
A + G R+ P + + + A+
Sbjct: 88 RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEA 147
Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
S L + + + + + +
Sbjct: 148 VGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACD 192
>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine
methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP:
c.66.1.31
Length = 416
Score = 35.1 bits (80), Expect = 0.018
Identities = 9/91 (9%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
+++ ++ + D +++G+G G + Q+ + +EK + + +
Sbjct: 142 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201
Query: 93 ----------HPNRLEIIQDDALKVDFEKFF 113
+ + D L ++ +
Sbjct: 202 FRKWMKWYGKKHAEYTLERGDFLSEEWRERI 232
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 35.3 bits (80), Expect = 0.018
Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 27/171 (15%)
Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI--------EKDQQFFPILKDIS 90
I + +DG ++++G+G G T L +LG + + + +
Sbjct: 34 IEPWATGVDG-VILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGT 92
Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL-----PYNIGTRLLFNWISADTWPP 145
+ L + L G LL ++ S + P
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVED---GGGLLMSFFSGPSLEP 149
Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
+ + ++ + E + G++ ++ PH +
Sbjct: 150 MYHPVATAYRWPLPE----------LAQALETAGFQVTSSHWDPRFPHAYL 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.0 bits (79), Expect = 0.019
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 13/34 (38%)
Query: 238 RQSLKRLGGENLLHQAGIETNLRAEN----LSIE 267
+Q+LK+L QA ++ L A++ L+I+
Sbjct: 19 KQALKKL-------QASLK--LYADDSAPALAIK 43
Score = 30.0 bits (66), Expect = 0.68
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
++L L Q + ++ A ++P L++ KATM
Sbjct: 20 QALKKL-QASL--KLYADDSAP---ALAI------KATM 46
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 35.0 bits (80), Expect = 0.020
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
+I++ +G G + +L T K++ +E ++ + K + + +++EII+ D
Sbjct: 52 KIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLK-- 109
Query: 108 DFEKFFNISSPIRIIANLPY 127
+ N PY
Sbjct: 110 KITDLIPKERADIVTCNPPY 129
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 35.0 bits (80), Expect = 0.020
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDA 104
G+ V+EIG G G ++ + V+ +E ++ I K + + + D
Sbjct: 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG 135
Query: 105 LKVDFE 110
E
Sbjct: 136 YYGVPE 141
>2vjq_A Formyl-coenzyme A transferase; cytoplasm, class III COA
transferase; HET: EPE; 1.8A {Oxalobacter formigenes}
PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A*
2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B*
1vgq_A*
Length = 428
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 43 SGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77
+ LDGI V++ + AGP TQM+ LGA VI IE
Sbjct: 2 TKPLDGINVLDFTHVQAGPA-CTQMMGFLGAN-VIKIE 37
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein, transferase; HET:
TNA MTA; 1.66A {Methanothermobacterthermautotrophicus}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A*
Length = 298
Score = 34.7 bits (79), Expect = 0.024
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD-IS 90
L +LK A G + IG GP LT +LL + +V V+E + + + I
Sbjct: 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167
Query: 91 SQHPNRLEIIQDDALKVDFEKF 112
+ + +I D +D +F
Sbjct: 168 GLGVDGVNVITGDETVIDGLEF 189
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A*
Length = 340
Score = 34.8 bits (79), Expect = 0.025
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
I ++ V+++G G G L+ GA+KV+ +++ +
Sbjct: 56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEIL 99
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase, structural genomics; 1.90A
{Anabaena variabilis atcc 29413}
Length = 279
Score = 34.6 bits (78), Expect = 0.025
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 12/160 (7%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
G ++++G G G LT+ + GA + ++ H + + K
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKP 117
Query: 108 --------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
+ I I G R + + E+L + +G
Sbjct: 118 LDAVFSNAMLHWVKEPEAAIASIHQA-LKSGGRFVAEFGGKGNIKYILEALYNAL-ETLG 175
Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
N ++ + K FD++ F P
Sbjct: 176 IHNPQALNPWYFPSIGEYVNILEKQG--FDVTYAALFNRP 213
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 34.5 bits (78), Expect = 0.026
Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 9/119 (7%)
Query: 4 NNKSHSLKTILSHYKIIPKKYMGQN------FLLDL-NILKKIAESSGSLDGITVIEIGA 56
+ I HY I ++ + + N +K + G +V+++G
Sbjct: 14 QAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGC 73
Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL--EIIQDDALKVDFEKFF 113
G G G + ++ + + + R D+ +
Sbjct: 74 GKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 132
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus HB8} PDB: 2yr0_A
Length = 263
Score = 34.2 bits (77), Expect = 0.033
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVI------EKDQQFFPILKDISSQHPNRLEII 100
+ +E+G G G + L+ G R + + E +Q + I
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI 98
Query: 101 QDDALKVD----FEKFFNISSPIRIIANLPYNI--GTRLLFNWISADTWPPF 146
V + + +++A + G LL W A+ P +
Sbjct: 99 PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEW 150
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 33.9 bits (77), Expect = 0.037
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 19/118 (16%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDAL 105
+++G G G +T L R V I+++ + + +H + + +++ DA
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92
Query: 106 KVDFEKFFNISSPIRIIANLPYNI-------------GTRLLFNWISADTWPPFWESL 150
+ + I ++ + G R++ I +T E L
Sbjct: 93 EALCK---IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECL 147
>3ege_A Putative methyltransferase from antibiotic biosynthesis pathway;
YP_324569.1, structural genomics; 2.40A {Anabaena
variabilis atcc 29413}
Length = 261
Score = 34.1 bits (77), Expect = 0.039
Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 10/139 (7%)
Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
Y I K+Y Q + D+ I+ I G + +IGAG G + L G V
Sbjct: 5 YNSIGKQY-SQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE 63
Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALK-----VDFEKFFNISSPIRIIANLPYNI-- 129
+ + K + + S + + I
Sbjct: 64 PSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEM-QRIIR 122
Query: 130 -GTRLLFNWISADTWPPFW 147
GT +L + +
Sbjct: 123 DGTIVLLTFDIRLAQRIWL 141
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 33.7 bits (76), Expect = 0.042
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
+IL+ + S V+E G G GNLT LL G V IE ++ I K+ +
Sbjct: 36 DILEDVVNKSFG----NVLEFGVGTGNLTNKLLLAGRT-VYGIEPSREMRMIAKEKLPKE 90
Query: 94 PN 95
+
Sbjct: 91 FS 92
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 33.7 bits (77), Expect = 0.044
Identities = 9/72 (12%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
+ + + ++ + G G L +LG V +++ K ++ + ++
Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLASLGYE-VTAVDQSSVGLAKAKQLAQEKGVKIT 79
Query: 99 IIQDDALKVDFE 110
+Q + D
Sbjct: 80 TVQSNLADFDIV 91
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 34.0 bits (77), Expect = 0.044
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 3 MNNKSHSLKTILSHYKIIPKKY-MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
M +++ LS+Y+ +Y +D + V+E+ +G G
Sbjct: 1 MTTSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYW 60
Query: 62 TQMLLTLGARKVIVIEKDQQFFPILK 87
T+ L L R V ++ +
Sbjct: 61 TRHLSGLADR-VTALDGSAEMIAEAG 85
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; structural genomics,
riken structural genomics/proteomics initiative, RSGI,
NPPSFA; HET: NAD; 2.05A {Pyrococcus horikoshii OT3} PDB:
2dfv_A* 3gfb_A*
Length = 348
Score = 33.7 bits (76), Expect = 0.048
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 8/119 (6%)
Query: 48 GITVIEIGAGPGNL--TQMLLTLGARKVIVIEKDQQFFPILKD------ISSQHPNRLEI 99
G +V+ GAGP L + GA VIV E + K I+ + ++
Sbjct: 168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKE 227
Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
+ D + F S + + + + + + L+ K +
Sbjct: 228 VMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKAL 286
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 33.3 bits (74), Expect = 0.060
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
V+ +GAG G T M L +V+V+E+ P + Q+P +E+++
Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAA-GQNPRTMELLRI 59
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics, protein structure initiative, PSI;
HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 33.4 bits (75), Expect = 0.062
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 48 GITVIEIGAGPGNLTQMLLTL----GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
G TV++ G GN T L +L G I+ K +R+ +I+D
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG 82
Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
+D + ++ NL Y + T +++ LL
Sbjct: 83 HQNMD---KYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 33.0 bits (75), Expect = 0.075
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
+EIG G T+ L R + VI+ + + + + D E
Sbjct: 55 GLEIGCAAGAFTEKLAPHCKR-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAE 113
Query: 111 KFFNISS 117
F I
Sbjct: 114 LFDLIVV 120
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidoreductase; HET: FAD; 1.80A
{Streptomyces SP}
Length = 500
Score = 32.8 bits (73), Expect = 0.096
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 51 VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
VI +GAGP + + L +V+V+E+ + + + +E+
Sbjct: 14 VIVVGAGPAGMM-LAGELRLAGVEVVVLERLVERTGESRGL-GFTARTMEVFDQ 65
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidoreductase; HET: FAD; 2.70A
{Streptomyces}
Length = 499
Score = 32.5 bits (72), Expect = 0.10
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
VI +GAGP G + L LG V+V+E+ Q + + +E+
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGL-GFTARTMEVFDQ 66
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, structural
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 32.6 bits (73), Expect = 0.10
Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 11/155 (7%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQD 102
V IGAG + L G VI++EK + + I+ + +
Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMP- 65
Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
D + + + I+ L + +T + + I
Sbjct: 66 DMNAISMDTSPAFTFNEEHISG--ETYAEYLQVVANHYELNIFENTVVTNISADDAYYTI 123
Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
+ H + V TG F H
Sbjct: 124 ATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEI 158
>2q7t_A Protein TRAI, DNA helicase I; relaxase, hydrolase, conjugation;
HET: TMP; 2.42A {Escherichia coli} PDB: 2q7u_A* 2a0i_A
1p4d_A
Length = 301
Score = 32.2 bits (73), Expect = 0.13
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIED 268
+ + EAF R +T+R+++ A ++T +++ E
Sbjct: 226 MPGVPVEAFSGRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEI 272
>3dmg_A Probable ribosomal RNA small subunit methyltransferase;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A*
Length = 381
Score = 31.8 bits (71), Expect = 0.18
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
LL+ + E + G V+++GAG G LT L +GA +V+ +E D
Sbjct: 215 ASLLLLEALQERLGPEG---VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLS 270
Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
L+ + + + + D + E+ + I+ N P+++G ++
Sbjct: 271 LQKGLEANALKAQALHSDVDEALTEE----ARFDIIVTNPPFHVGGAVIL 316
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, coiled coil, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3
Length = 210
Score = 31.6 bits (71), Expect = 0.19
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 17/143 (11%)
Query: 48 GITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD---- 102
V+ +GA G L + + +E + F L ++ + N + ++ D
Sbjct: 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP 117
Query: 103 -------DALKVDFEKFFNISSPIRIIAN----LPYNIGTRLLFNWISAD-TWPPFWESL 150
+ + + ++ + + AN L ++ S D T P
Sbjct: 118 WKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFK 177
Query: 151 TLLFQKEVGERITAQKNSPHYGR 173
++L + E +I + Y R
Sbjct: 178 SVLKEMEGDFKIVKHGSLMPYHR 200
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 31.6 bits (71), Expect = 0.19
Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 38/227 (16%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDAL 105
G V+E G G G T +L ++ I+ + ++ + ++ ++ +Q +
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF 97
Query: 106 KVDFEK-FFNISSPIRIIANLPYNIGT-----RLL----------FNWISADTWPPFWES 149
+ FE F+ ++ +L ++L + S P ++
Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKA 157
Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM---------MFDISPHVFFPSPK 200
+ E Y + + L G + + + ++ P+
Sbjct: 158 I---------EAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRMVYIDSSKPE 208
Query: 201 VTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
+ I IP + + ++ I +E + K + L ++ + G
Sbjct: 209 LVDGFILKTIIPMVEGVKEQSLKMQIIKEEEWEKGIEELHKTAEHGG 255
>1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein,
structural genomics, JCSG, protein structure
initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans
c-125} SCOP: c.66.1.41
Length = 260
Score = 31.5 bits (70), Expect = 0.22
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
L K+ + + V+++ G G++ + V+ + + +
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKV 74
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 31.2 bits (70), Expect = 0.24
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 13 ILSHYK-IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGA 70
L HYK Y ++ ++ G T +++G+G GN Q L G
Sbjct: 211 KLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGD----TFMDLGSGVGNCVVQAALECGC 266
Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
E + + R ++ V+F
Sbjct: 267 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 31.2 bits (69), Expect = 0.28
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
V+E+ AG G LT L LG + F L + + +R ++Q D
Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145
Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
+K F N R L+ + P
Sbjct: 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEP 182
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
structure initiative; HET: MSE; 1.53A {Streptococcus
thermophilus lmg 18311}
Length = 291
Score = 31.0 bits (70), Expect = 0.29
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
L + K +A + S++ + I+IGA G T ++L GA+ V ++
Sbjct: 71 LKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVD 115
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus HB8} PDB: 2eq7_A*
Length = 455
Score = 31.1 bits (70), Expect = 0.32
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF---------FP--ILKDIS---SQHP 94
++ IGAGPG LG KV V+EK++ P L + + +
Sbjct: 4 LLVIGAGPGGYVAAIRAAQLGM-KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAK 62
Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
L + +++D ++ +++ + N I+ + S +
Sbjct: 63 KGLLGAKVKGVELDLPAL--MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVL 120
Query: 155 QKEVGERITAQK 166
+E GE + A+
Sbjct: 121 VEETGEELEARY 132
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 30.8 bits (69), Expect = 0.32
Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 18/147 (12%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDA 104
T+ +IG G G++ L + + E ++ + + + +Q A
Sbjct: 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA 84
Query: 105 LKVDFEKFFNISSPIRIIANLPYNI----------GTRLLFNWISADTWPPFWESLTLLF 154
+ + N + G RL+ N ++ ++ E +
Sbjct: 85 PRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVES-----EQMLWAL 139
Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWR 181
+K+ G I+ H + +
Sbjct: 140 RKQFGGTIS-SFAISHEHTVGSFITMK 165
>1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase;
HET: FAD; 2.30A {Trypanosoma cruzi} SCOP: c.3.1.5
c.3.1.5 d.87.1.1 PDB: 1gxf_A* 1bzl_A* 1nda_A*
Length = 485
Score = 30.7 bits (68), Expect = 0.35
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88
++ IGAG G L TL ++V VI+ P
Sbjct: 6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFS 45
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 30.8 bits (69), Expect = 0.37
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 54 IGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILK 87
IGAG G L TL ++V V++ P
Sbjct: 13 IGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFY 48
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 30.9 bits (69), Expect = 0.38
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
L Y + + ++ + +++ + V+++G G G + L LG V
Sbjct: 89 LGFYCKKEDYFSKKYNTTAIH--GDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY-DV 145
Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
+ ++ L + + + D
Sbjct: 146 TSWDHNENSIAFLNETKEKENLNISTALYDI 176
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 1pry_A
Length = 227
Score = 30.8 bits (69), Expect = 0.38
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 48 GITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
G +V+ +G G + + K+ IE + L I + N + I+ D
Sbjct: 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATK 133
Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRL 133
++ I P +
Sbjct: 134 PEEYRALVPKVDVIFEDVAQPTQAKILI 161
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A*
Length = 265
Score = 30.4 bits (67), Expect = 0.45
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
+Y + L L LK + + G++ G +I+IG+GP + +
Sbjct: 24 KYYSFGSRHCAENEILRHL--LKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTE 81
Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
+IV + Q L+ + P + D E
Sbjct: 82 IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRM 123
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 30.5 bits (68), Expect = 0.46
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 6/157 (3%)
Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
I+ + F LD ++A G V+++ G GA +VI
Sbjct: 187 AKFIVDMRGQKTGFFLD-QRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIG 245
Query: 76 IEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
I+K + K+ + +R++ I A + + ++ + P +
Sbjct: 246 IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEK 305
Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
+ + L L+ K+ G +T S H
Sbjct: 306 DLKAGLRAYFNVNFAGLNLV--KDGGILVTCS-CSQH 339
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.97A
{Thermus thermophilus HB8} SCOP: c.90.1.1 PDB: 1v9a_A
Length = 239
Score = 30.3 bits (67), Expect = 0.48
Identities = 17/112 (15%), Positives = 28/112 (25%), Gaps = 17/112 (15%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI---------------VIEKDQQFFPILKDISSQHP 94
V +GAGPG+ LLTL A +++ V+ + +
Sbjct: 2 RVYLVGAGPGDPE--LLTLKAYRLLKEAPVVLYDRLVDERVLALAPGEKVYVGKEEGESE 59
Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
+ EI + F + L P
Sbjct: 60 KQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPG 111
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus
megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 30.2 bits (67), Expect = 0.48
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
+ IGAGPG+ L+T+ K++
Sbjct: 22 KLYIIGAGPGDPD--LITVKGLKLL 44
>3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin
monooxygenase, oxidoreductase; HET: FAD; 2.10A
{Mesorhizobium loti} PDB: 3gmc_A*
Length = 415
Score = 30.4 bits (67), Expect = 0.49
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 12/98 (12%)
Query: 51 VIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
G G LT + L V + EK + I N L +++
Sbjct: 50 AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI-YLWHNGLRVLEG------- 101
Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
+ ++ P T + +S +T+
Sbjct: 102 ---LGALDDVLQGSHTPPTYETWMHNKSVSKETFNGLP 136
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2ve2_A*
Length = 490
Score = 30.2 bits (67), Expect = 0.50
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88
++ IGAG G L +L ++V VI+ + P
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYA 45
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 30.4 bits (68), Expect = 0.52
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD------ 88
+ K + V++ AG G +L ++G +V ++E++ +L D
Sbjct: 78 VAKAVGIKGDY--LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGY 134
Query: 89 ----ISSQHPNRLEIIQDDAL 105
I RL++I +L
Sbjct: 135 ADAEIGGWLQERLQLIHASSL 155
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 30.3 bits (67), Expect = 0.53
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
++ + + L+ L + S++ VI++G G GNL +LL + + I
Sbjct: 1 MLKNEETEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQIT 57
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, PSI, protein structure initiative; HET: SAM;
1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 30.3 bits (68), Expect = 0.56
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 48 GITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQ 101
G V+E GAG G LT LL A +VI E+ + S P+ ++
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV 159
Query: 102 DDALKVDFEK------FFNISSPIRIIANL 125
D + ++ +P ++ +
Sbjct: 160 SDLADSELPDGSVDRAVLDMLAPWEVLDAV 189
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 30.0 bits (67), Expect = 0.63
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQ 81
+ +GAGP +++ L LG + + EK +
Sbjct: 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium
tumefaciens str}
Length = 260
Score = 30.1 bits (67), Expect = 0.65
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 48 GITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKD-----ISSQHPNRLEIIQ 101
+ ++GAG G + L +V + E+ Q+ + ++ R+E+++
Sbjct: 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLE 96
Query: 102 DDALKVDFEKFFNISSPIR---IIANLPYN 128
D + +I N PYN
Sbjct: 97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYN 126
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
NP_988299.1, structural genomics, joint center for
structural genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 29.9 bits (66), Expect = 0.67
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
I + I G G T I+IG+GPG L+ L + ++ +
Sbjct: 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNE 80
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5- methylpyrimidin-2(1H)-ONE, base
flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus}
SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 29.8 bits (66), Expect = 0.78
Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 11/131 (8%)
Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKD 79
+ +G+ ++ + + + G V+E G + +E D
Sbjct: 15 PRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEID 73
Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
+ + E I D L + + F++ + +
Sbjct: 74 PKALDLPP--------WAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAV 125
Query: 140 ADTWPPFWESL 150
D + + +
Sbjct: 126 KDLYKKAFSTW 136
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 29.4 bits (65), Expect = 0.85
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
+ +GAGPG LG KV ++EK
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN 36
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 29.5 bits (65), Expect = 0.87
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79
V IG+G + + GA +V +IE+
Sbjct: 7 VAVIGSGGAAMAAALKAVEQGA-QVTLIERG 36
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 29.3 bits (65), Expect = 0.87
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
L I E +++ G G G + LL K+ I+ + +K+
Sbjct: 9 YLPNIFEGKKG----VIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVI 63
Query: 95 NRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI----GTRLLFNWISADT--WP 144
+ + VD F ++ +I+ + I G ++ +W +T P
Sbjct: 64 TLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEV-KRILKDDGRVIIIDWRKENTGIGP 122
Query: 145 PFWESLT 151
P +
Sbjct: 123 PLSIRMD 129
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 29.4 bits (65), Expect = 0.88
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
+ +G GPG+L LT AR+ +
Sbjct: 3 ELFLVGMGPGDLP--GLTQRAREAL 25
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1mc5_A* 2fze_A*
1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 29.6 bits (65), Expect = 0.88
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 14/124 (11%)
Query: 48 GITVIEIGAGPGNL--TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----------- 94
G G G L GA ++I ++ ++ F K+ +
Sbjct: 191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQ 250
Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
L + D + FE N +R + + ++A L+
Sbjct: 251 EVLIEMTDGGVDYSFECIGN-VKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVT 309
Query: 155 QKEV 158
+
Sbjct: 310 GRTW 313
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II,
tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A
{Chlorobaculum tepidum} PDB: 2e0k_A*
Length = 259
Score = 29.5 bits (65), Expect = 0.89
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
++I + GPG+ L+T+ A +
Sbjct: 6 SIISVSLGPGDPG--LITVKALSQL 28
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral
enzyme structure, ATP-binding, nucleotide-binding; HET:
SAM; 1.70A {Yokose virus}
Length = 282
Score = 29.5 bits (66), Expect = 0.91
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV--IVIEKDQQFFPIL 86
L+ + E V+++G G G + +L +KV + PI+
Sbjct: 79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM 132
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics,
PSI-2, protein structure initiative; HET: FAD; 2.15A
{Colwellia psychrerythraea 34H}
Length = 492
Score = 29.5 bits (65), Expect = 0.92
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 51 VIEIGAGPGNLT-QMLLTLGARKVIVIEKD 79
V IG G + KV++IE
Sbjct: 11 VAIIGTGTAGMGAYRAAKKHTDKVVLIEGG 40
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A
{Methanothermobacterthermautotrophicus str}
Length = 232
Score = 29.5 bits (65), Expect = 1.00
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
+I +G GPG+ LLTL A V+
Sbjct: 4 KLIGVGVGPGDSE--LLTLRAVNVL 26
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavoprotein, FAD, P64K; HET: FAD; 2.75A
{Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1bhy_A*
Length = 482
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82
V+ +G GPG + G KV ++E+ +
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTL 41
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A*
2grt_A* 4grt_A* ...
Length = 478
Score = 29.2 bits (64), Expect = 1.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
+ IG G G L + LGA + V+E +
Sbjct: 23 YLVIGGGSGGLASARRAAELGA-RAAVVESHK 53
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.1 bits (64), Expect = 1.1
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
I IG G G + G K +IE +
Sbjct: 7 YIAIGGGSGGIASINRAAMYGQ-KCALIEAKE 37
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ binding, reduced izoalloxazine bending,
oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter
pylori 26695} PDB: 2q0k_A*
Length = 311
Score = 29.1 bits (64), Expect = 1.1
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
IG GP L+ G + ++ EK
Sbjct: 4 CAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM 35
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 29.3 bits (65), Expect = 1.1
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
G ++++G+ L L+ G + I E + + H ++++ +
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLAN 74
Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
L E + IA + + R+L
Sbjct: 75 GLAAFEETDQVS---VITIAGMGGRLIARILEEG 105
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
cobalamin, SAM, SAH, uroporphyrinogen-III
methyltransferase; HET: SAH; 2.70A {Pseudomonas
denitrificans} SCOP: c.90.1.1
Length = 280
Score = 29.1 bits (64), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
+V +GAGPG+ LLTL A +
Sbjct: 16 SVWLVGAGPGDPG--LLTLHAANAL 38
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
structural genomics, protein structure initiative, PSI;
1.75A {Escherichia coli O157}
Length = 376
Score = 28.9 bits (63), Expect = 1.2
Identities = 23/165 (13%), Positives = 40/165 (24%), Gaps = 5/165 (3%)
Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD--DALK 106
+ VI++ +G G L+ G + +E DQ P L + +D
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHA---INFPRSLHVQEDVSLLNA 59
Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
+ FF PI I P G + D+ + L + A+
Sbjct: 60 EIIKGFFKNDMPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAEN 119
Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
+ + D
Sbjct: 120 VPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASDYGAPTIRTR 164
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD,
structural genomics, SAM, S-adenosylmethionine, MCSG;
HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Length = 251
Score = 29.0 bits (64), Expect = 1.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
T+ IG G G+ LTL A +
Sbjct: 4 TIYVIGIGTGSPE--FLTLQAISGL 26
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 29.0 bits (64), Expect = 1.2
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82
V+ IG GP LG +EK +
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKL 40
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 29.0 bits (64), Expect = 1.3
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
+ +IG+ L + A I E F + ++++ + +
Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGN 80
Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
L V + +IA + + +L
Sbjct: 81 GLAVI---EKKDAIDTIVIAGMGGTLIRTILEEG 111
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 29.1 bits (64), Expect = 1.3
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
L + +++ V++IGAG G+ + I ++ ++
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEM 55
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.1 bits (64), Expect = 1.3
Identities = 19/169 (11%), Positives = 43/169 (25%), Gaps = 18/169 (10%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
+ G ++++G+G G + I+ F K + +
Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 84
Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI------------GTRLLFNWISAD 141
R+ I +DA + ++++ + G +L
Sbjct: 85 SERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR 144
Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
P E + +T P G+ ++ D
Sbjct: 145 QLPATEEIAQACGVSSTSDFLTL----PGLVGAFDDLGYDVVEMVLADQ 189
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: c.90.1.1
Length = 235
Score = 28.7 bits (63), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
V +GAG G LTL A +V+
Sbjct: 4 KVYLVGAGFGGPE--HLTLKALRVL 26
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 28.8 bits (63), Expect = 1.3
Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 32/185 (17%)
Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPN 95
K+ + G +G+TV+++G G G L + KV I+ ++ + ++
Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL 87
Query: 96 RLEIIQDDALK------------VDFEKFFNISSPIRIIANLPYNI--GTRLL---FNWI 138
+ + F +S P++ + L L +
Sbjct: 88 KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE 147
Query: 139 SADTWPPF------WESLTLLFQKEVGERITAQKNSP--HYGRLSVLTGWRTKATMM--- 187
D PP WE +L ++ G R+ +G +++ + +M
Sbjct: 148 ERDKGPPPEEVYSEWEVGLIL--EDAGIRVGRVVEVGKYCFGVYAMIVKQEEENPLMNVP 205
Query: 188 FDISP 192
F I P
Sbjct: 206 FKIPP 210
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 29.0 bits (64), Expect = 1.3
Identities = 2/21 (9%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 54 IGAGPGNLTQMLLTLGARKVI 74
+G G ++ +++ + +
Sbjct: 18 VGLGLWDVK--DISVKGLEAV 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.7 bits (64), Expect = 1.3
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 247 ENLLHQAGIETNLRAENLSIEDFC-----RITNILTD 278
E++ +AG R NL+I C I+
Sbjct: 5 ESIDKRAG----RRGPNLNIVLTCPECKVYPPKIVER 37
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A*
Length = 474
Score = 28.9 bits (64), Expect = 1.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82
V IG+GPG LG K + IEK++
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGF-KTVCIEKNETL 41
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 29.0 bits (63), Expect = 1.4
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVI-----EKDQQFFPILKDISSQHPNRLEIIQDDA 104
++++G GPG T + +I + ++K+ S + +
Sbjct: 39 LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98
Query: 105 LKVDF 109
F
Sbjct: 99 DDFKF 103
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein
structure initiative, midwest center for structural
genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens
str}
Length = 297
Score = 28.8 bits (63), Expect = 1.4
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
VI IG L+ L + +++++ +
Sbjct: 5 VIIIGGSYAGLSAALQLGRAR-KNILLVDAGE 35
>3be6_A Putative iron compound-binding protein of ABC transporter family;
open form, closed form, group III periplasmic binding
protein; HET: MSE; 1.82A {Escherichia coli O157} PDB:
3be5_A*
Length = 297
Score = 28.8 bits (63), Expect = 1.4
Identities = 16/117 (13%), Positives = 25/117 (21%), Gaps = 8/117 (6%)
Query: 57 GPGNLTQMLLTLGARKVIV---IEKDQQFFPILKDISSQHPNRLEIIQDDALK-VDFEKF 112
++T L+ LG V D F + + I +D E
Sbjct: 27 HDLDITIPLIELGVPPVASHGRTRPDGSHFIRSGALLTGVDFDNSSIAFIGTADIDIEAI 86
Query: 113 FNISSPIRIIANLPYNIGTRLL---FNWISADTWPPFWESLTLLFQKEVGERITAQK 166
+ I RL E L + G +
Sbjct: 87 VAAKPDLIITEPTRNTPIERLEKIAPTVSIDHLKGGAPEIYRKLAEL-TGTQSQLAI 142
>3cc8_A Putative methyltransferase; NP_977653.1, structural genomics,
joint center for structural genomics, JCSG; 1.64A
{Bacillus cereus atcc 10987}
Length = 230
Score = 28.6 bits (62), Expect = 1.4
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
MN+ +SL Y+ Y ++ N+LK I + V++IG G L
Sbjct: 2 MNSPKNSL------YEEKSGHYYNA---VNPNLLKHI-----KKEWKEVLDIGCSSGALG 47
Query: 63 QMLLTLGA 70
+ G
Sbjct: 48 AAIKENGT 55
>2p7i_A Hypothetical protein; structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PSI-2; 1.74A {Pectobacterium atrosepticum
SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Length = 250
Score = 28.7 bits (63), Expect = 1.5
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
MT++ + K NF D+ + + ++E+G+ G+
Sbjct: 2 MTIS------RNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGD 55
Query: 61 LTQMLLTLGARKVIVIEKDQQFFP 84
T L + +E ++
Sbjct: 56 FTSRLQEHFN-DITCVEASEEAIS 78
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 28.8 bits (63), Expect = 1.5
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEK 78
V+ +GAG L+ + +V +IE+
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 71
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 28.9 bits (64), Expect = 1.5
Identities = 19/193 (9%), Positives = 60/193 (31%), Gaps = 17/193 (8%)
Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
+ +S D + V IG+ L G +++V++ F
Sbjct: 26 NGLKKSGE--DKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDF--------DPDVF 75
Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
+ AL + ++ ++ + + + D + ++ L+ +
Sbjct: 76 EASVS--ALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFAT-DVYIVEYQGDELVATR 132
Query: 157 EV-GERITAQKNSPHYGRLSVL---TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
+++ + + P + + + ++ + +V PS + S ++
Sbjct: 133 GGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVG 192
Query: 213 NPIPCCLESLKKI 225
+ ++ I
Sbjct: 193 GGNDIDITTVDFI 205
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 28.8 bits (63), Expect = 1.5
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79
+ IG G G + + + GA K +++E
Sbjct: 14 YLVIGGGSGGVASARRAASYGA-KTLLVEAK 43
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 28.8 bits (64), Expect = 1.5
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 54 IGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
IG+G G + ++ LG +V + E+ +
Sbjct: 32 IGSGSGGVRAARLAGALGK-RVAIAEEYR 59
>1ybf_A AMP nucleosidase; structural genomics, protein structure
initiative, PSI; 2.90A {Bacteroides thetaiotaomicron
vpi-5482} SCOP: c.56.2.1
Length = 268
Score = 28.8 bits (64), Expect = 1.6
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 20/95 (21%)
Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE----------------SSG 44
M++ K ++ L Y + ++L N + +
Sbjct: 1 MSLKTKQEIVENWLPRYTQRQLIDF-EPYILLTNFSHYLHVFAEHYGVPIVGEHTSMPNA 59
Query: 45 SLDGITVIEIGAGPGN---LTQMLLTLGARKVIVI 76
S +G+T+I G G N + +L + + VI +
Sbjct: 60 SAEGVTLINFGMGSANAATIMDLLWAIHPKAVIFL 94
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 28.5 bits (62), Expect = 1.6
Identities = 19/167 (11%), Positives = 44/167 (26%), Gaps = 18/167 (10%)
Query: 51 VIEIGAGPGNLT---QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
++ IGAGP L Q+ + ++EK+ + + + + + +
Sbjct: 3 ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVL-PGRPGQHPANPLSYL 61
Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
D P R+ + T + ++ +Q
Sbjct: 62 DA--------PERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGI 113
Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
+ + + + + + V HF L P
Sbjct: 114 AIRFES------PLLEHGELPLADYDLVVLANGVNHKTAHFTEALVP 154
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis}
Length = 464
Score = 28.8 bits (63), Expect = 1.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79
V+ +GAGPG LG ++E
Sbjct: 6 VVVLGAGPGGYVAAIRAAQLGL-STAIVEPK 35
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thioredoxin
reductase, thioredoxin; HET: FAD; 2.00A {Salmonella
typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2
PDB: 1zyn_A 1zyp_A
Length = 521
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79
+D K+ AE+ D V+ +G+GP G + ++ +
Sbjct: 194 KVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKG-IRTGLMGER 244
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 28.7 bits (63), Expect = 1.7
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
+I IG G G + + A KV ++EK +
Sbjct: 5 LIVIGGGSGGMAAARRAARHNA-KVALVEKSR 35
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase,
viral enzyme structure; HET: SFG; 1.90A {Wesselsbron
virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 28.4 bits (63), Expect = 1.8
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RKVIVIEKDQQFFPIL 86
++ + E V+++G G G + K + + PI
Sbjct: 70 IRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH 123
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structure
initiative; 2.30A {Desulfovibrio vulgaris DP4}
Length = 472
Score = 28.6 bits (62), Expect = 1.8
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 51 VIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQFF----PILKDISSQHPNRLEIIQDD 103
V+ IGA L V +I++ + I +S + N +
Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATP 65
Query: 104 ALKVDFEKFFNISSPIRIIAN 124
V +FF I+ + +
Sbjct: 66 YNVVRDPEFFRINKDVEALVE 86
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, midwest center for structural
genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm
1728} SCOP: c.66.1.13
Length = 275
Score = 28.4 bits (63), Expect = 1.9
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPN 95
I G G+ ++E+G G GN++ +L G + V+E+D+ D S+ +
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 160
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 28.4 bits (63), Expect = 1.9
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
G+TV+++GA PG +Q ++T K +I D + + + + + AL
Sbjct: 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALL 81
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I; coenzyme A,
flavin adenine dinucleotide, selenomethionine, FAD,
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 28.6 bits (62), Expect = 1.9
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 41 ESSGSLDGITVIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQFF----PILKDISSQH 93
+ GS++ + IG ++ ++ V+ +EK + + + IS
Sbjct: 32 DRWGSMN---YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAI 88
Query: 94 PNRLEIIQDDALKVDFEKFFNI 115
+ ++I + F + I
Sbjct: 89 ASTEKLIARNV--KTFRDKYGI 108
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refolding, transferase; HET: SR1
ADP; 1.90A {Arabidopsis thaliana}
Length = 420
Score = 28.3 bits (62), Expect = 1.9
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
+ + +K + ++ L + S D + + E+G G N ++ + +
Sbjct: 3 FEEFTPLNEKSLVD-YIKSTPALSSKIGADKSDDDLVIKEVGDGNLNFV-FIVVGSSGSL 60
Query: 74 IVIEKDQQFFPILKDISSQHPNRLEII 100
++ +Q P ++ I P E
Sbjct: 61 VI----KQALPYIRCIGESWPMTKERA 83
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 28.6 bits (63), Expect = 1.9
Identities = 4/21 (19%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 54 IGAGPGNLTQMLLTLGARKVI 74
IG G + +T+ + +
Sbjct: 26 IGLGLYDEK--DITVRGLEAV 44
>2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative
splicing, electron transport, FAD, flavoprotein, NADP,
nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo
sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A*
3ean_A* 3eao_A*
Length = 513
Score = 28.4 bits (62), Expect = 2.0
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88
+I IG G G L + G KV+V++ +
Sbjct: 29 LIIIGGGSGGLAAAKEAAQYGK-KVMVLDFVTPTPLGTRW 67
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS,
oxidoreductase, structural genomics, PSI, protein
structure initiative; HET: FAD NAP; 3.00A
{Mycobacterium tuberculosis}
Length = 335
Score = 28.3 bits (62), Expect = 2.1
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
VI IG+GP T +V E
Sbjct: 17 VIVIGSGPAGYTAALYAARAQ-LAPLVFEGTS 47
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 28.2 bits (62), Expect = 2.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
+I IG G G L + G +V +IE
Sbjct: 7 LIAIGGGSGGLAVAEKAAAFGK-RVALIESKA 37
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus
HB8} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 28.5 bits (63), Expect = 2.1
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
+I IG GPG LG KV+ +E +
Sbjct: 9 LIVIGTGPGGYHAAIRAAQLGL-KVLAVEAGE 39
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 28.3 bits (62), Expect = 2.1
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQF 82
+ +GAGP G + L L +V+++EK +F
Sbjct: 95 CLVVGAGPCGLRAAVELALLGARVVLVEKRIKF 127
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET:
SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
Length = 225
Score = 28.4 bits (62), Expect = 2.1
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
++ E G D + I++G G G L +
Sbjct: 16 ELTEIIGQFDRV-HIDLGTGDGRNIYKLAINDQNTFYI 52
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM;
1.80A {Vaccinia virus WR} SCOP: c.66.1.25 PDB: 1vp3_A*
Length = 348
Score = 28.3 bits (63), Expect = 2.2
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 17 YKIIPKKYMGQNFLL--DLNILKKIAESSGSLDGITVIEIGAGPGN----LTQMLLTLGA 70
Y GQ LL +L L K+ G LDG TV+ IG+ PG L LG
Sbjct: 44 EVAKKLPYQGQLKLLLGELFFLSKLQRH-GILDGATVVYIGSAPGTHIRYLRDHFYNLGV 102
Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ---DDALKVDFEKFFNISSPIRI 121
++ + PIL + + ++ D+ +K + S I I
Sbjct: 103 IIKWMLIDGRHHDPILNGLR-----DVTLVTRFVDEEYLRSIKKQLHPSKIILI 151
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine;
HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB:
2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A*
2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A*
2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Length = 265
Score = 28.2 bits (62), Expect = 2.2
Identities = 4/21 (19%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 54 IGAGPGNLTQMLLTLGARKVI 74
IG G + +T+ ++
Sbjct: 6 IGLGLYDER--DITVKGLEIA 24
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728}
Length = 397
Score = 28.3 bits (61), Expect = 2.2
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALK 106
V+ +G GP G+ K ++IEK + + +S N +I D +
Sbjct: 7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFI 66
Query: 107 VDFEKFFNISSP--IRIIANLPYNIGTRLLFNWISADTWPPFWE 148
+ K I P R I G + +
Sbjct: 67 ANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAA 110
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
Length = 267
Score = 28.0 bits (61), Expect = 2.3
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
LK ++ + + +IG G G T +L +V ++ F
Sbjct: 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFID 83
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 27.9 bits (61), Expect = 2.4
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIV 75
V++IG G G ++ G + V
Sbjct: 42 CRRVLDIGCGRGEFLELCKEEGIESIGV 69
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 28.1 bits (61), Expect = 2.4
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 51 VIEIGAGPGNLTQML----LTLGARKVIVIEKD 79
++ +G GP L +V VI+ D
Sbjct: 5 IVILGGGPAGYEAALVAATSHPETTQVTVIDCD 37
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 27.9 bits (61), Expect = 2.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
V+ IG GP LT +++EK
Sbjct: 11 VVIIGGGPAGLTAAIYTGRAQ-LSTLILEKGM 41
>1dxl_A Dihydrolipoamide dehydrogenase; multienzyme complex protein,
pyruvate dehydrogenase complex, glycine decarboxylase
complex, flavoprotein; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 28.1 bits (62), Expect = 2.5
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 42 SSGSLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82
+SGS D V+ IG GPG LG K IEK
Sbjct: 1 ASGS-DENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGAL 41
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 28.0 bits (61), Expect = 2.5
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-------VIEKDQQFFPILK-DISSQH 93
ITV+++G G G K++ +++ QQ + +K S++
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 94 PNRLEIIQDDALKVDFEKFF 113
E I D+ K F
Sbjct: 89 IFSAEFITADSSKELLIDKF 108
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative,
PSI, center for eukaryotic structural genomics, CESG;
2.79A {Cyanidioschyzon merolae strain 10D}
Length = 281
Score = 27.8 bits (61), Expect = 2.6
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
+ + G TV E+GAG G ++ + GA +V+ +
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD 112
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
alternative splicing, FAD, mitochondrion, NADP,
redox-active center, selenium; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 27.9 bits (61), Expect = 2.6
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88
++ IG G G L + LG KV V + + K
Sbjct: 9 LLVIGGGSGGLACAKEAAQLGK-KVAVADYVEPSPRGTKW 47
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 27.8 bits (61), Expect = 2.7
Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 28/124 (22%)
Query: 1 MTMNNKSHSLKTILSHYKI--IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
M++ +S + +K+ + +Y +++K G VIEIG+ P
Sbjct: 1 MSLQLRSRA------AFKLEFLLDRY---------RVVRK---------GDAVIEIGSSP 36
Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
G TQ+L +L + + + ++ + + I + EK ++
Sbjct: 37 GGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96
Query: 117 SPIR 120
S
Sbjct: 97 SDAM 100
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 27.7 bits (61), Expect = 2.7
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFF--PILKDISSQ---HPNRLEIIQ 101
GIT+I+ PG + L V + + D + + + + + + I
Sbjct: 14 GITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIY 73
Query: 102 DDALKVDFEK 111
A + +++
Sbjct: 74 APAGREMWQR 83
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae}
Length = 336
Score = 27.8 bits (59), Expect = 2.8
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79
+ IG G L+ Q L G +V + +K
Sbjct: 5 IAIIGTGIAGLSAAQALTAAG-HQVHLFDKS 34
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 27.8 bits (62), Expect = 2.8
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 240 SLKRLGGENLLHQAGIETNLRA-----ENLSIEDFCRITNILTD 278
S GG ++L +A IE NL + N++ E+ + I
Sbjct: 2 SSGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 45
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 27.7 bits (61), Expect = 2.8
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
G ++++G+ L LL +G I E + S+H +++++ +
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN 80
Query: 104 ALKVDFEKFFNISSPI 119
L E + I
Sbjct: 81 GLSAFEEADNIDTITI 96
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 27.9 bits (62), Expect = 2.8
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 51 VIEIGAGPGNLTQMLLTL-GARKV--IVIEKDQQFFPIL 86
V+++G G G + T+ ++V P+L
Sbjct: 77 VVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPML 115
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 28.0 bits (61), Expect = 2.9
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82
V+ IGAG L V++ + +
Sbjct: 7 VVVIGAGGAGYHGAFRLAKAKY-NVLMADPKGEL 39
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A*
1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A*
3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A*
2zcj_A* 2z6u_A* 2z6q_A* 2uz4_A* ...
Length = 327
Score = 27.6 bits (60), Expect = 2.9
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
L G+ I++ AG G L + GA V E D+ + + N E + D
Sbjct: 8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEM------NFGEKPEGDI 61
Query: 105 LKVDFEKFFNI 115
+V+ + +
Sbjct: 62 TQVNEKTIPDH 72
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative; HET: SAH; 2.30A {Bacillus
cereus atcc 14579} PDB: 2gh1_A
Length = 284
Score = 27.9 bits (61), Expect = 3.0
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
+ +++ G G G L +L+ L K I+ + +++ P E ++ DA
Sbjct: 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT 82
Query: 106 KVDFEKFFNI 115
+++ ++I
Sbjct: 83 EIELNDKYDI 92
>3fet_A Electron transfer flavoprotein subunit alpha related protein;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: MSE; 2.05A {Thermoplasma acidophilum}
Length = 166
Score = 27.9 bits (62), Expect = 3.0
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
D+N L+++ + + IG G LG++ + +K F + + I
Sbjct: 12 DMNFLRQVNTLVAGKGDMDSVIIGEGD------AKGLGSKVLYRAKKGTPFDAVSEGILK 65
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1, methyltransferase
domain, structural genomics; HET: MSE; 1.60A
{Mesorhizobium loti MAFF303099}
Length = 243
Score = 27.8 bits (60), Expect = 3.0
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
Y + + G + + L+ + + G+ ++++G G G + GA
Sbjct: 16 YSQLGRSIEGLDGAAEWPALRAML---PEVGGLRIVDLGCGFGWFCRWAHEHGASY 68
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 27.7 bits (61), Expect = 3.2
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82
V+ IG GPG LG K +EK
Sbjct: 5 VVVIGGGPGGYVASIKAAQLGM-KTACVEKRGAL 37
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
disulphide bond, oxidoreductase; HET: FAD KPC; 1.65A
{Xanthobacter autotrophicus PY2} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
Length = 523
Score = 27.6 bits (60), Expect = 3.3
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
I IG G L +G R++IV
Sbjct: 46 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF 77
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics,
JCSG, PSI, protein structure initiative; 1.65A
{Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 27.6 bits (61), Expect = 3.5
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
G +I+ G G G + +L KV EK ++F + + ++ R+ I D
Sbjct: 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD 172
Query: 104 AL-----KVDFEKFFNISSPIRIIANLPYNI--GTRLLFNWISADTWPPFWESL 150
K F ++ P I + G R + + + L
Sbjct: 173 ISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKL 226
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43
Length = 252
Score = 27.3 bits (59), Expect = 3.6
Identities = 14/89 (15%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
+ +++ +++I + + V+++ G G T L G V+ ++ ++
Sbjct: 19 RIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYE-VVGLDLHEEMLR 77
Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFF 113
+ + + + ++E +Q D L++ F+ F
Sbjct: 78 VARRKAKERNLKIEFLQGDVLEIAFKNEF 106
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 27.4 bits (60), Expect = 3.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79
++ IG GPG LG +++E
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ 37
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 27.4 bits (60), Expect = 3.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
VI IGAGPG LG K +IEK +
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK 36
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genomics, JCSG;
HET: SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 27.3 bits (59), Expect = 3.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 51 VIEIGAGPGNLTQMLLTLGARKV 73
V+++G G G L + L G V
Sbjct: 56 VLDLGCGEGWLLRALADRGIEAV 78
>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z,
cytoplasm, FAD, flavoprotein, NADP, oxidoreductase,
redox- active center; HET: FAD NAP; 2.80A
{Saccharomyces cerevisiae}
Length = 326
Score = 27.3 bits (59), Expect = 3.7
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80
V IG+GP T L K I+ E
Sbjct: 13 VTIIGSGPAAHTAAIYLARAE-IKPILYEGMM 43
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 27.3 bits (59), Expect = 3.8
Identities = 2/37 (5%), Positives = 11/37 (29%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
+ +++++ G G + + +
Sbjct: 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLT 76
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly
(A) polymerase, mRNA processing, transcription; HET: SAH
3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A*
1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A*
1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A*
2gaf_A 3er8_A 2ga9_A* 3erc_A*
Length = 307
Score = 27.1 bits (60), Expect = 4.8
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 17 YKIIPKKYMGQNFLL--DLNILKKIAESSGSLDGITVIEIGAGPGN----LTQMLLTLGA 70
Y GQ LL +L L K+ G LDG TV+ IG+ PG L LG
Sbjct: 29 EVAKKLPYQGQLKLLLGELFFLSKLQRH-GILDGATVVYIGSAPGTHIRYLRDHFYNLGV 87
Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ---DDALKVDFEKFFNISSPIRI 121
++ + PIL + + ++ D+ +K + S I I
Sbjct: 88 IIKWMLIDGRHHDPILNGLR-----DVTLVTRFVDEEYLRSIKKQLHPSKIILI 136
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
icosahedral virus; 3.50A {Bluetongue virus} SCOP:
e.28.1.1
Length = 901
Score = 27.1 bits (60), Expect = 4.9
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
+ +KV I + + F IL DI ++ +E+ + + L V+F+ + +
Sbjct: 126 FYSTIIKKVRFI-RGKGSF-ILHDIPARDHRGMEVAEPEVLGVEFKNVLPVLTAE 178
>2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661}
Length = 183
Score = 27.0 bits (59), Expect = 5.2
Identities = 12/68 (17%), Positives = 26/68 (38%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
V+++G G G +T + + D ++++ + +II+ A
Sbjct: 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED 94
Query: 107 VDFEKFFN 114
V + FN
Sbjct: 95 VLDKLEFN 102
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 26.9 bits (59), Expect = 5.3
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
P K+ ++ A PH+ + + ++ +
Sbjct: 107 AKPLTAETYKQMLKDGVKKAVAFSQYPHFSY----STTGSSINELWRQIKALDSERSISW 162
Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
S + + + I E++ K QE R +
Sbjct: 163 SVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVV 198
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodanese, flavin adenine
dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 26.9 bits (58), Expect = 5.5
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 51 VIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQF----FPILKDISSQHPNRLEIIQDD 103
++ +G G + L L ++I++E+ + + I R +++
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQT 98
Query: 104 ALKVDFEKFFNI 115
K FN+
Sbjct: 99 V--ERMSKRFNL 108
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A*
Length = 437
Score = 26.9 bits (59), Expect = 5.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQ--EAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
++ S +I FI P E ++ I + GK R+ L +++KR+G + LL G +
Sbjct: 339 AQMGSLLIPFIAAEEPFDEVKEVIENIWEWWMEEGKNRERLGETMKRVGFQKLLEVTGTK 398
>2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory
sulfite reductase, complex, siroheme, oxidoreductase;
HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5
d.58.36.2 d.134.1.1
Length = 437
Score = 26.8 bits (59), Expect = 5.5
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQ--EAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
++ S ++ F+ P E ++KI GK R+ L +++KRL + LL I
Sbjct: 339 AQMGSLLVPFVAAEEPFDEIKEVVEKIWDWWMEEGKNRERLGETMKRLSFQKLLEVTEIA 398
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 26.7 bits (58), Expect = 5.7
Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 19/135 (14%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
V+++G G G T L G + + ++ + K+ +L
Sbjct: 54 EAEVLDVGCGDGYGTYKLSRTGYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPF 112
Query: 108 DFEKF---------FNISSPIRIIANLPYNI---GTRLLFNWISADTWPPFWESLTLLFQ 155
+ E+F P+R + + + P + +
Sbjct: 113 ENEQFEAIMAINSLEWTEEPLRALNEI-KRVLKSDGYACI-----AILGPTAKPRENSYP 166
Query: 156 KEVGERITAQKNSPH 170
+ G+ + P
Sbjct: 167 RLYGKDVVCNTMMPW 181
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, ATP-binding, capsid protein, cleavage on PAIR
of basic residues; HET: GTA SAH; 1.45A {Yellow fever
virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Length = 277
Score = 26.8 bits (59), Expect = 5.8
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV--IVIEKDQQFFPIL 86
L+ E VI++G G G V + +D P+
Sbjct: 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN 116
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA
capping, S-adenosyl-L-methionine, viral protein; HET:
SAM; 2.90A {Meaban virus}
Length = 265
Score = 26.8 bits (59), Expect = 5.8
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI---VIEKDQQFFPIL 86
L + E V+++G G G + + + + P +
Sbjct: 63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRI 116
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase,
sulfate, beta- barrel, lyase; 2.20A {Pseudomonas
putida} SCOP: c.1.10.1
Length = 225
Score = 26.8 bits (59), Expect = 6.3
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEI 54
++M +K+ + I +I+P + + +A++ +G GI +E+
Sbjct: 10 LSMADKAARIDAICEKARILPVIT-----IAREEDILPLADALAAG---GIRTLEV 57
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 26.6 bits (58), Expect = 6.4
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74
V+ +GAGPG+ LLTL + I
Sbjct: 217 EVVLVGAGPGDAG--LLTLKGLQQI 239
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., PSI-2,
protein structure initiative, midwest center for
structural genomics; 2.81A {Staphylococcus aureus subsp}
Length = 288
Score = 26.5 bits (58), Expect = 6.7
Identities = 9/69 (13%), Positives = 16/69 (23%), Gaps = 3/69 (4%)
Query: 212 LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGIETNLRAENLSIED 268
+NP + K G K L + ++ + T+ E
Sbjct: 169 INPYDITGAEVLKYIDFNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMTSSTLPEAFDEV 228
Query: 269 FCRITNILT 277
T
Sbjct: 229 MAETKLPPT 237
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 26.5 bits (58), Expect = 7.3
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
G+ ++E+G G G ++ + V IE+ +
Sbjct: 91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV 127
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD;
2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB:
1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 26.6 bits (58), Expect = 7.4
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 51 VIEIGAGPGNLTQML-LTLGARKVIVIEKDQ 80
++ +G+GP T + + ++I +
Sbjct: 8 LLILGSGPAGYTAAVYAARANLQPVLITGME 38
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia virus}
Length = 302
Score = 26.3 bits (57), Expect = 7.8
Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 11/81 (13%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL---------- 97
V+ I G G + ++ + D + ++ + +
Sbjct: 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYI 108
Query: 98 -EIIQDDALKVDFEKFFNISS 117
E I+ D + F
Sbjct: 109 QETIRSDTFVSSVREVFYFGK 129
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 26.2 bits (57), Expect = 7.9
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
V+++G G G L+ + ++ + + + + + E+ +
Sbjct: 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVF 255
Query: 106 KVDFEKFFNISS--PIRIIANLPYNIGTRLL 134
+F I S P + L+
Sbjct: 256 SEVKGRFDMIISNPPFHDGMQTSLDAAQTLI 286
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 26.4 bits (57), Expect = 8.0
Identities = 14/127 (11%), Positives = 33/127 (25%), Gaps = 21/127 (16%)
Query: 46 LDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
G V+++G G+LT + G +++ ++ D + + +
Sbjct: 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDID--------------SRLIHSARQNI 90
Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
+ + L + G + F SLT ++
Sbjct: 91 ------RHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPL 144
Query: 165 QKNSPHY 171
Sbjct: 145 DGADTSV 151
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,461,546
Number of extensions: 116529
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 185
Length of query: 284
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 193
Effective length of database: 3,487,026
Effective search space: 672996018
Effective search space used: 672996018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)