RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] (284 letters) >1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 Length = 252 Score = 221 bits (564), Expect = 1e-58 Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 8/256 (3%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 QNFL D ++ I + G ++EIG G LT+ + ++ VIE D+ L Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGE-RLDQLTVIELDRDLAARL 59 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPP 145 + P L I Q DA+ +F + + P+R+ NLPYNI T L+F+ ++ Sbjct: 60 QTHPFLGPK-LTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHL---FSYTD 115 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205 + + QKEV R+ A NS YGRLSV+ + + ++ P F P PKV S V Sbjct: 116 AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAV 175 Query: 206 IHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 + +PH + L +IT EAF +RRKT+R SL L +L GI+ +RAEN Sbjct: 176 VRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAEN 235 Query: 264 LSIEDFCRITNILTDN 279 +S+ +C++ N L +N Sbjct: 236 ISVAQYCQMANYLAEN 251 >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295 Score = 199 bits (506), Expect = 7e-52 Identities = 80/275 (29%), Positives = 122/275 (44%), Gaps = 28/275 (10%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE Sbjct: 22 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEI 80 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D+ P + + N +EII DALKVD K +++ANLPY I + + F Sbjct: 81 DKSLEPYANKLKELYNN-IEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKL- 134 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 ++ L++Q E +R+ A + YGRLSV R ++ + P F+P Sbjct: 135 ----IKRGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPK 190 Query: 199 PKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGE---------- 247 PKV S ++ P+ E+ + F R K++R++L E Sbjct: 191 PKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKK 250 Query: 248 ------NLLHQAGIETNLRAENLSIEDFCRITNIL 276 N + N + LS++D ++N Sbjct: 251 ILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEF 285 >3fyd_A Probable dimethyladenosine transferase; rossman fold, rRNA methylase, ribosomal assembly, methyltransferase, RNA-binding; 1.75A {Methanocaldococcus jannaschii} PDB: 3fyc_A* Length = 263 Score = 173 bits (440), Expect = 4e-44 Identities = 76/267 (28%), Positives = 117/267 (43%), Gaps = 28/267 (10%) Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 Q FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE D+ P Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYA 59 Query: 87 KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + + N +EII DALKVD K +++ANLPY I + + F Sbjct: 60 NKLKELYNN-IEIIWGDALKVDLNKLDFN----KVVANLPYQISSPITFKL-----IKRG 109 Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206 ++ L++Q E +R+ A + YGRLSV R ++ + P F+P PKV S ++ Sbjct: 110 FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIV 169 Query: 207 HFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE----------------NL 249 P+ E+ + F R K++R++L E N Sbjct: 170 KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNT 229 Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276 + N + LS++D ++N Sbjct: 230 NSEIKNLINEKVFKLSVKDIVNLSNEF 256 >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244 Score = 169 bits (430), Expect = 5e-43 Identities = 52/257 (20%), Positives = 94/257 (36%), Gaps = 22/257 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 QNF+ + + KI + + + EIG+G G+ T L+ V IE D Sbjct: 4 KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDH 62 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + ++ H N +++ D L+ F K +I N+PYNI T ++ + Sbjct: 63 KLCKTTENKLVDHDN-FQVLNKDILQFKFPKN----QSYKIFGNIPYNISTDIIRKIVFD 117 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + L+ + +R+ L++ +++ + F P PK Sbjct: 118 SIADEIY----LIVEYGFAKRLL-----NTKRSLALFLMAEVDISILSMVPREYFHPKPK 168 Query: 201 VTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S++I + I + + K K + + N L AGI+ Sbjct: 169 VNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKI---FTKNQFNNSLKHAGID--- 222 Query: 260 RAENLSIEDFCRITNIL 276 N+S E F + N Sbjct: 223 DLNNISFEQFLSLFNSY 239 >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299 Score = 162 bits (411), Expect = 6e-41 Identities = 69/286 (24%), Positives = 108/286 (37%), Gaps = 36/286 (12%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + GQ+ L + IL KI ++ V+EIG G GNLT LL L A+KVI I+ D Sbjct: 16 NLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDS 74 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 + +K + + AN+PY I + L+F Sbjct: 75 RMISEVKKRCLYEGYNNLEVYEG-----DAIKTVFPKFDVCTANIPYKISSPLIFKL--- 126 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + P ++ L+FQKE ER+ A +Y RL++ K T + +++ F P PK Sbjct: 127 ISHRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPK 186 Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL- 259 V S ++ IP + + + + F ++RKTL KR N+L Sbjct: 187 VDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKNWCTL 246 Query: 260 --------------------------RAENLSIEDFCRITNILTDN 279 R+ NL DF ++ Sbjct: 247 NKQVPVNFPFKKYCLDVLEHLDMCEKRSINLDENDFLKLLLEFNKK 292 >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A* Length = 249 Score = 159 bits (403), Expect = 6e-40 Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 16/263 (6%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 + KK GQ+ L+ +LKKIAE +G TV+E+G G GNLT++LL +K+ VIE Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62 Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 D++ LK I RLE+I +DA K F ++++ NLPYN+ + ++ N Sbjct: 63 DREMVENLKSI---GDERLEVINEDASKFPFCSLGK---ELKVVGNLPYNVASLIIENT- 115 Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198 + QKEV E++ G LSV + + P F P Sbjct: 116 --VYNKDCVPLAVFMVQKEVAEKLQ---GKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPP 170 Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 PKV S VI + + L++ KK + F RRK LR+ + E LL +AGI + Sbjct: 171 PKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINPD 226 Query: 259 LRAENLSIEDFCRITNILTDNQD 281 R E LS+EDF ++ ++ D+ + Sbjct: 227 ARVEQLSLEDFFKLYRLIEDSGE 249 >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Length = 271 Score = 155 bits (392), Expect = 1e-38 Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 19/273 (6%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 S++ +L + + K GQNFL+ L++I E++ G V E+G G G LT+ LL Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLE- 66 Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 +V IEKD + P+L++ S P RL + ++ ++ANLPY+ Sbjct: 67 AGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL-----LVANLPYH 121 Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 I T L+ + + L L QKEV ER+TA+ +P YG L++ A +F Sbjct: 122 IATPLVTRLL----KTGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLF 177 Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246 D+ P FFP PKV S+++ P L ++ + AFGKRRKTL +L G Sbjct: 178 DLPPGAFFPPPKVWSSLVRLTPTGALDDPGLF---RLVEAAFGKRRKTLLNALAAAGYPK 234 Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276 E L G+ +RAE L +E F R+ L Sbjct: 235 ARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267 >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285 Score = 148 bits (374), Expect = 1e-36 Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 19/265 (7%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 +GQ+ L + I+ I + + V+E+G G GN+T LL A+KV+ E D + Sbjct: 3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPR 61 Query: 82 FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 L ++L+++ D LK D F +ANLPY I + +F Sbjct: 62 LVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTC------VANLPYQISSPFVFKL-- 113 Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 PF+ L+FQ+E R+ A+ Y RLS+ T + + + + F P P Sbjct: 114 -LLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPP 172 Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAG 254 KV S+V+ P P P + + + F ++ KTL + K + N Sbjct: 173 KVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCS 232 Query: 255 IETNLRAENLSIEDFCRITNILTDN 279 + + E+ SI D I ILT Sbjct: 233 VHNIIIPEDFSIADK--IQQILTST 255 >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245 Score = 126 bits (317), Expect = 5e-30 Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 22/259 (8%) Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 QNFL +L +I + + TV EIG G G+LT L + ++V IE D Sbjct: 3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDS 61 Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140 F + + + +I D L+ F +I+ N+PY++ T+++ + Sbjct: 62 HLFNLSSEKLKLNTRV-TLIHQDILQFQFPNKQR----YKIVGNIPYHLSTQIIKKVVFE 116 Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 + + F K + + L +L + + + F P PK Sbjct: 117 SRASDIYLIVEEGFYK---------RTLDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPK 167 Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 V S +I H +P L + + + L + + A + Sbjct: 168 VNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQF---HQAMKHAKVN--- 221 Query: 260 RAENLSIEDFCRITNILTD 278 ++ E I N Sbjct: 222 NLSTITYEQVLSIFNSYLL 240 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373 Score = 44.5 bits (104), Expect = 3e-05 Identities = 14/126 (11%), Positives = 43/126 (34%), Gaps = 9/126 (7%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIA--ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74 + P Q ++ + ++ + G L+ + +G ++L+ +++ Sbjct: 140 DRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSGLPKRIA 199 Query: 75 VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGT 131 V++ D++ ++ + N + + D K + + I + P + Sbjct: 200 VLDIDERLTKFIEKAA----NEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA 255 Query: 132 RLLFNW 137 F Sbjct: 256 IRAFVG 261 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 43.8 bits (103), Expect = 5e-05 Identities = 54/362 (14%), Positives = 101/362 (27%), Gaps = 170/362 (46%) Query: 4 NNKSHSL---------KTILSHYKIIPKKYMGQNFLLDLNILKKIAES---SGSLDGITV 51 N H+L T++ ++I K Y+ + K + S +G Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELI-KNYITARIMAKRPF-DKKSNSALFRAVGEGNA- 154 Query: 52 IEIGA---GPGNLTQMLLTLGARKVIVIEKDQQFF-----------PILKDI---SSQHP 94 ++ A G GN + +F ++ D+ S++ Sbjct: 155 -QLVAIFGGQGN---------------TDD---YFEELRDLYQTYHVLVGDLIKFSAETL 195 Query: 95 NRLEIIQDDALKVDFEKFFN---------------------ISSPIRIIANLP------- 126 + L I+ +D EK F +S PI + P Sbjct: 196 SEL--IRTT---LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI----SCPLIGVIQL 246 Query: 127 --YNIGTRLL----------FNWI--------------SADTWPPFWES----LTLLFQK 156 Y + +LL D+W F+ S +T+LF Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF- 305 Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH-FIPHLNPI 215 G R + +P+ + +++ + + + Sbjct: 306 ---------------------IGVRC----------YEAYPNTSLPPSILEDSLENNEGV 334 Query: 216 PCCLESLKKITQEAFGKRRKTLRQSL---KRL------GGENL--------LHQAGIETN 258 P + S+ +TQE L K++ G +NL L+ G+ Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY--GLNLT 392 Query: 259 LR 260 LR Sbjct: 393 LR 394 Score = 39.5 bits (92), Expect = 0.001 Identities = 37/274 (13%), Positives = 76/274 (27%), Gaps = 108/274 (39%) Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 L L+ ++ Y+ N D++ L A L TL Sbjct: 84 LNLCLTEFE---NCYLEGN---DIHAL--AA----KLLQENDT--------------TLV 117 Query: 70 ARKVIVIEKDQQFFPIL----KDISSQHPNRL-EIIQDDALKV--------DFEKFFNIS 116 K ++ + + + + + L + + ++ + + +F Sbjct: 118 KTKELI----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-- 171 Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESL----TLLFQKEVGERITAQKNSPHYG 172 L R L+ T+ L + + + A+K + Sbjct: 172 -------EL------RDLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEK---VFT 210 Query: 173 R-LSVLTGWRTKATMMFD----ISPHVFFPSPKVTSTVI------HFIPHLNPIPCCLES 221 + L++L W + D +S + P +I H++ + Sbjct: 211 QGLNILE-WLENPSNTPDKDYLLSIPISCP-------LIGVIQLAHYV-----VTA---- 253 Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255 K+ G LR LK G H G+ Sbjct: 254 --KLL----GFTPGELRSYLKGATG----HSQGL 277 Score = 26.4 bits (58), Expect = 8.2 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 35/137 (25%) Query: 149 SLTLLFQKEVGERITAQKNSPHYGRL---SVLTGWRTKATMMF-DISPHVFFPSPKVTST 204 +LT+ F E G+RI ++N Y + +++ G + K +F +I+ H ST Sbjct: 1671 NLTIHFGGEKGKRI--REN---YSAMIFETIVDG-KLKTEKIFKEINEH---------ST 1715 Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG---------GENLLHQAGI 255 F L S + TQ A K + LK G G +L A + Sbjct: 1716 SYTFRSEKG-----LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770 Query: 256 ETNLRAENLSIEDFCRI 272 + A+ +SIE + Sbjct: 1771 AS--LADVMSIESLVEV 1785 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 Score = 41.8 bits (97), Expect = 2e-04 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 M++ + K Y +P+ G + + LKK+ + TV+++G G G Sbjct: 1 MSLKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKML---PDFNQKTVLDLGCGFGW 57 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 GA+KV+ I+ ++ K ++ Sbjct: 58 HCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP 90 >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 Score = 40.8 bits (95), Expect = 4e-04 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 18/135 (13%) Query: 3 MNNKSHSLKTILSHYKII--PKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAG 57 M K+ L+ L + K Y+ Q + D + + G++ G +VI+ G G Sbjct: 4 MGIKND-LEIRLQKLQQQGNFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTG 61 Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 G L LGA V + D K ++ + + D ++ K+ Sbjct: 62 NGILACGSYLLGAESVTAFDIDPDAIETAK----RNCGGVNFMVADVSEIS-GKYD---- 112 Query: 118 PIRIIANLPYNIGTR 132 I N P+ + Sbjct: 113 --TWIMNPPFGSVVK 125 >3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A Length = 341 Score = 40.5 bits (94), Expect = 4e-04 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95 + I ++ V+++G G G L+ GARK+ +E + S+ + Sbjct: 36 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 95 Query: 96 RLEIIQDDALKVDFEKFFNI 115 R+ +I +V + +I Sbjct: 96 RIVVIPGKVEEVSLPEQVDI 115 >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Length = 232 Score = 40.4 bits (94), Expect = 5e-04 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 6/132 (4%) Query: 36 LKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 L+K + ++G T ++IG+ G T ++L GA+ V ++ L Sbjct: 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQ---LAWKIRSDE 81 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 + + Q + F P ++ + I L+ + + + Sbjct: 82 RVVVMEQFNFRNAVLADFEQG-RPSFTSIDVSF-ISLDLILPPLYEILEKNGEVAALIKP 139 Query: 155 QKEVGERITAQK 166 Q E G + Sbjct: 140 QFEAGREQVGKN 151 >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus} Length = 480 Score = 40.4 bits (94), Expect = 5e-04 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPN 95 + I ++ V+++G G G L+ GARK+ +E + S + Sbjct: 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 207 Query: 96 RLEIIQDDALKVDFEKFFNI 115 R+ +I +V + +I Sbjct: 208 RIVVIPGKVEEVSLPEQVDI 227 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Length = 340 Score = 39.7 bits (92), Expect = 8e-04 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95 + + V+++G+G G L GARKVI IE +K + +++ + Sbjct: 47 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDH 106 Query: 96 RLEIIQDDALKVDFE 110 + II+ +V+ Sbjct: 107 VVTIIKGKVEEVELP 121 >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 Score = 39.0 bits (89), Expect = 0.001 Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 10/160 (6%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 ++ GAG G L+ L G KV ++E + P+ I + P +E + L + Sbjct: 7 ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGI-NIQPAAVEAL--AELGLG 63 Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 + P + + + T + + I Sbjct: 64 -PALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQ----YSIHRGELQMILLAAVR 118 Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 G+ +V TG + D + + Sbjct: 119 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGA 158 >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 Score = 38.7 bits (89), Expect = 0.001 Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 I ++ V+++G G G L+ GA+ VI ++ Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI 72 >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} Length = 185 Score = 38.5 bits (89), Expect = 0.002 Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 19/180 (10%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDAL 105 D V++ G GN T L L + V + +Q +S E+I D Sbjct: 22 DESIVVDATMGNGNDTAFLAGLSKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80 Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 +D + I NL Y T + L L EVG R+ Sbjct: 81 NLD---HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRL---EVGGRLAIM 134 Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLK 223 H G G K ++ + T+ + + +N P LE L+ Sbjct: 135 IYYGHDG------GDMEKDAVLEYVI---GLDQRVFTAMLYQPLNQINTPPFLVMLEKLQ 185 >2gci_A Probable alpha-methylacyl-COA racemase MCR; COA transferase, proton transfer, coenzyme A, isomerase; HET: MRR; 1.60A {Mycobacterium tuberculosis} SCOP: c.123.1.1 PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* Length = 360 Score = 37.1 bits (85), Expect = 0.004 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Query: 43 SGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77 +G L G+ V+E IG GP +L LGA V+ I+ Sbjct: 2 AGPLSGLRVVELAGIGPGPH-AAMILGDLGAD-VVRID 37 >1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structure initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A* Length = 428 Score = 37.1 bits (85), Expect = 0.005 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Query: 43 SGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77 S L GI V++ + +GP TQML GA VI IE Sbjct: 4 STPLQGIKVLDFTGVQSGPS-CTQMLAWFGAD-VIKIE 39 >2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis H37RV} Length = 359 Score = 36.4 bits (83), Expect = 0.008 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Query: 42 SSGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77 + G L G+ VIE IG GP +L LGA V+ + Sbjct: 3 TGGPLAGVKVIELGGIGPGPH-AGMVLADLGAD-VVRVR 39 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 Score = 36.3 bits (83), Expect = 0.008 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 35 ILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 I + IA S S V++ G G T G +VI I+ D + ++ + + Sbjct: 65 IAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVY 123 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 +I + + DF + + + P+ Sbjct: 124 GIADKI---EFICGDFLLLASFLKADVVFLSPPW 154 >1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A* 1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A* Length = 408 Score = 35.9 bits (81), Expect = 0.010 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Query: 42 SSGSLDGITVIEIG---AGPGNLTQMLLTLGARKVIVIE 77 G L G+ V+ G AGP QM GA VI IE Sbjct: 11 KFGPLAGLRVVFSGIEIAGPF-AGQMFAEWGAE-VIWIE 47 >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549 Score = 35.5 bits (80), Expect = 0.015 Identities = 17/165 (10%), Positives = 41/165 (24%), Gaps = 5/165 (3%) Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 V+ +G GP G + L +V+E+ + + P +E+ + + Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVG-TIGPRSMELFRRWGVAKQI 87 Query: 110 EKFFNISSPIRIIANLPYNIG---TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 A + G R+ P + + + A+ Sbjct: 88 RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEA 147 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 S L + + + + + + Sbjct: 148 VGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACD 192 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Length = 416 Score = 35.1 bits (80), Expect = 0.018 Identities = 9/91 (9%), Positives = 31/91 (34%), Gaps = 11/91 (12%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 +++ ++ + D +++G+G G + Q+ + +EK + + + Sbjct: 142 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201 Query: 93 ----------HPNRLEIIQDDALKVDFEKFF 113 + + D L ++ + Sbjct: 202 FRKWMKWYGKKHAEYTLERGDFLSEEWRERI 232 >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 Score = 35.3 bits (80), Expect = 0.018 Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 27/171 (15%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI--------EKDQQFFPILKDIS 90 I + +DG ++++G+G G T L +LG + + + + Sbjct: 34 IEPWATGVDG-VILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGT 92 Query: 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL-----PYNIGTRLLFNWISADTWPP 145 + L + L G LL ++ S + P Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVED---GGGLLMSFFSGPSLEP 149 Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196 + + ++ + E + G++ ++ PH + Sbjct: 150 MYHPVATAYRWPLPE----------LAQALETAGFQVTSSHWDPRFPHAYL 190 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.0 bits (79), Expect = 0.019 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 13/34 (38%) Query: 238 RQSLKRLGGENLLHQAGIETNLRAEN----LSIE 267 +Q+LK+L QA ++ L A++ L+I+ Sbjct: 19 KQALKKL-------QASLK--LYADDSAPALAIK 43 Score = 30.0 bits (66), Expect = 0.68 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 12/39 (30%) Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186 ++L L Q + ++ A ++P L++ KATM Sbjct: 20 QALKKL-QASL--KLYADDSAP---ALAI------KATM 46 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 Score = 35.0 bits (80), Expect = 0.020 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107 +I++ +G G + +L T K++ +E ++ + K + + +++EII+ D Sbjct: 52 KIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLK-- 109 Query: 108 DFEKFFNISSPIRIIANLPY 127 + N PY Sbjct: 110 KITDLIPKERADIVTCNPPY 129 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 Score = 35.0 bits (80), Expect = 0.020 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 48 GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDA 104 G+ V+EIG G G ++ + V+ +E ++ I K + + + D Sbjct: 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG 135 Query: 105 LKVDFE 110 E Sbjct: 136 YYGVPE 141 >2vjq_A Formyl-coenzyme A transferase; cytoplasm, class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A* Length = 428 Score = 35.0 bits (79), Expect = 0.020 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Query: 43 SGSLDGITVIE---IGAGPGNLTQMLLTLGARKVIVIE 77 + LDGI V++ + AGP TQM+ LGA VI IE Sbjct: 2 TKPLDGINVLDFTHVQAGPA-CTQMMGFLGAN-VIKIE 37 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Length = 298 Score = 34.7 bits (79), Expect = 0.024 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD-IS 90 L +LK A G + IG GP LT +LL + +V V+E + + + I Sbjct: 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167 Query: 91 SQHPNRLEIIQDDALKVDFEKF 112 + + +I D +D +F Sbjct: 168 GLGVDGVNVITGDETVIDGLEF 189 >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A* Length = 340 Score = 34.8 bits (79), Expect = 0.025 Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 I ++ V+++G G G L+ GA+KV+ +++ + Sbjct: 56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEIL 99 >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413} Length = 279 Score = 34.6 bits (78), Expect = 0.025 Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 12/160 (7%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 G ++++G G G LT+ + GA + ++ H + + K Sbjct: 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKP 117 Query: 108 --------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 + I I G R + + E+L + +G Sbjct: 118 LDAVFSNAMLHWVKEPEAAIASIHQA-LKSGGRFVAEFGGKGNIKYILEALYNAL-ETLG 175 Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199 N ++ + K FD++ F P Sbjct: 176 IHNPQALNPWYFPSIGEYVNILEKQG--FDVTYAALFNRP 213 >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 Score = 34.5 bits (78), Expect = 0.026 Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 9/119 (7%) Query: 4 NNKSHSLKTILSHYKIIPKKYMGQN------FLLDL-NILKKIAESSGSLDGITVIEIGA 56 + I HY I ++ + + N +K + G +V+++G Sbjct: 14 QAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGC 73 Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL--EIIQDDALKVDFEKFF 113 G G G + ++ + + + R D+ + Sbjct: 74 GKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 132 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Length = 263 Score = 34.2 bits (77), Expect = 0.033 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 12/112 (10%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVI------EKDQQFFPILKDISSQHPNRLEII 100 + +E+G G G + L+ G R + + E +Q + I Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI 98 Query: 101 QDDALKVD----FEKFFNISSPIRIIANLPYNI--GTRLLFNWISADTWPPF 146 V + + +++A + G LL W A+ P + Sbjct: 99 PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEW 150 >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 Score = 33.9 bits (77), Expect = 0.037 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 19/118 (16%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDAL 105 +++G G G +T L R V I+++ + + +H + + +++ DA Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 Query: 106 KVDFEKFFNISSPIRIIANLPYNI-------------GTRLLFNWISADTWPPFWESL 150 + + I ++ + G R++ I +T E L Sbjct: 93 EALCK---IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECL 147 >3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413} Length = 261 Score = 34.1 bits (77), Expect = 0.039 Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 10/139 (7%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76 Y I K+Y Q + D+ I+ I G + +IGAG G + L G V Sbjct: 5 YNSIGKQY-SQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE 63 Query: 77 EKDQQFFPILKDISSQHPNRLEIIQDDALK-----VDFEKFFNISSPIRIIANLPYNI-- 129 + + K + + S + + I Sbjct: 64 PSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEM-QRIIR 122 Query: 130 -GTRLLFNWISADTWPPFW 147 GT +L + + Sbjct: 123 DGTIVLLTFDIRLAQRIWL 141 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 Score = 33.7 bits (76), Expect = 0.042 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 +IL+ + S V+E G G GNLT LL G V IE ++ I K+ + Sbjct: 36 DILEDVVNKSFG----NVLEFGVGTGNLTNKLLLAGRT-VYGIEPSREMRMIAKEKLPKE 90 Query: 94 PN 95 + Sbjct: 91 FS 92 >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 Score = 33.7 bits (77), Expect = 0.044 Identities = 9/72 (12%), Positives = 26/72 (36%), Gaps = 1/72 (1%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98 + + + ++ + G G L +LG V +++ K ++ + ++ Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLASLGYE-VTAVDQSSVGLAKAKQLAQEKGVKIT 79 Query: 99 IIQDDALKVDFE 110 +Q + D Sbjct: 80 TVQSNLADFDIV 91 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 Score = 34.0 bits (77), Expect = 0.044 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 2/86 (2%) Query: 3 MNNKSHSLKTILSHYKIIPKKY-MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61 M +++ LS+Y+ +Y +D + V+E+ +G G Sbjct: 1 MTTSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYW 60 Query: 62 TQMLLTLGARKVIVIEKDQQFFPILK 87 T+ L L R V ++ + Sbjct: 61 TRHLSGLADR-VTALDGSAEMIAEAG 85 >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NAD; 2.05A {Pyrococcus horikoshii OT3} PDB: 2dfv_A* 3gfb_A* Length = 348 Score = 33.7 bits (76), Expect = 0.048 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 8/119 (6%) Query: 48 GITVIEIGAGPGNL--TQMLLTLGARKVIVIEKDQQFFPILKD------ISSQHPNRLEI 99 G +V+ GAGP L + GA VIV E + K I+ + ++ Sbjct: 168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKE 227 Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158 + D + F S + + + + + + L+ K + Sbjct: 228 VMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKAL 286 >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535 Score = 33.3 bits (74), Expect = 0.060 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 V+ +GAG G T M L +V+V+E+ P + Q+P +E+++ Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAA-GQNPRTMELLRI 59 >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 Score = 33.4 bits (75), Expect = 0.062 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%) Query: 48 GITVIEIGAGPGNLTQMLLTL----GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 G TV++ G GN T L +L G I+ K +R+ +I+D Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG 82 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153 +D + ++ NL Y + T +++ LL Sbjct: 83 HQNMD---KYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 Score = 33.0 bits (75), Expect = 0.075 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 1/67 (1%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 +EIG G T+ L R + VI+ + + + + D E Sbjct: 55 GLEIGCAAGAFTEKLAPHCKR-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAE 113 Query: 111 KFFNISS 117 F I Sbjct: 114 LFDLIVV 120 >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 1.80A {Streptomyces SP} Length = 500 Score = 32.8 bits (73), Expect = 0.096 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 51 VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 VI +GAGP + + L +V+V+E+ + + + +E+ Sbjct: 14 VIVVGAGPAGMM-LAGELRLAGVEVVVLERLVERTGESRGL-GFTARTMEVFDQ 65 >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 2.70A {Streptomyces} Length = 499 Score = 32.5 bits (72), Expect = 0.10 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 VI +GAGP G + L LG V+V+E+ Q + + +E+ Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGL-GFTARTMEVFDQ 66 >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, structural genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 Score = 32.6 bits (73), Expect = 0.10 Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 11/155 (7%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQD 102 V IGAG + L G VI++EK + + I+ + + Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMP- 65 Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162 D + + + I+ L + +T + + I Sbjct: 66 DMNAISMDTSPAFTFNEEHISG--ETYAEYLQVVANHYELNIFENTVVTNISADDAYYTI 123 Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197 + H + V TG F H Sbjct: 124 ATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEI 158 >2q7t_A Protein TRAI, DNA helicase I; relaxase, hydrolase, conjugation; HET: TMP; 2.42A {Escherichia coli} PDB: 2q7u_A* 2a0i_A 1p4d_A Length = 301 Score = 32.2 bits (73), Expect = 0.13 Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIED 268 + + EAF R +T+R+++ A ++T +++ E Sbjct: 226 MPGVPVEAFSGRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEI 272 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* Length = 381 Score = 31.8 bits (71), Expect = 0.18 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 LL+ + E + G V+++GAG G LT L +GA +V+ +E D Sbjct: 215 ASLLLLEALQERLGPEG---VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLS 270 Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 L+ + + + + D + E+ + I+ N P+++G ++ Sbjct: 271 LQKGLEANALKAQALHSDVDEALTEE----ARFDIIVTNPPFHVGGAVIL 316 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Length = 210 Score = 31.6 bits (71), Expect = 0.19 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 17/143 (11%) Query: 48 GITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD---- 102 V+ +GA G L + + +E + F L ++ + N + ++ D Sbjct: 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP 117 Query: 103 -------DALKVDFEKFFNISSPIRIIAN----LPYNIGTRLLFNWISAD-TWPPFWESL 150 + + + ++ + + AN L ++ S D T P Sbjct: 118 WKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFK 177 Query: 151 TLLFQKEVGERITAQKNSPHYGR 173 ++L + E +I + Y R Sbjct: 178 SVLKEMEGDFKIVKHGSLMPYHR 200 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 Score = 31.6 bits (71), Expect = 0.19 Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 38/227 (16%) Query: 48 GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDAL 105 G V+E G G G T +L ++ I+ + ++ + ++ ++ +Q + Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF 97 Query: 106 KVDFEK-FFNISSPIRIIANLPYNIGT-----RLL----------FNWISADTWPPFWES 149 + FE F+ ++ +L ++L + S P ++ Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKA 157 Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM---------MFDISPHVFFPSPK 200 + E Y + + L G + + + ++ P+ Sbjct: 158 I---------EAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRMVYIDSSKPE 208 Query: 201 VTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 + I IP + + ++ I +E + K + L ++ + G Sbjct: 209 LVDGFILKTIIPMVEGVKEQSLKMQIIKEEEWEKGIEELHKTAEHGG 255 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Length = 260 Score = 31.5 bits (70), Expect = 0.22 Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 L K+ + + V+++ G G++ + V+ + + + Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKV 74 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433 Score = 31.2 bits (70), Expect = 0.24 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 6/100 (6%) Query: 13 ILSHYK-IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGA 70 L HYK Y ++ ++ G T +++G+G GN Q L G Sbjct: 211 KLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGD----TFMDLGSGVGNCVVQAALECGC 266 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 E + + R ++ V+F Sbjct: 267 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 Score = 31.2 bits (69), Expect = 0.28 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 3/97 (3%) Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 V+E+ AG G LT L LG + F L + + +R ++Q D Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144 +K F N R L+ + P Sbjct: 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEP 182 >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} Length = 291 Score = 31.0 bits (70), Expect = 0.29 Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 L + K +A + S++ + I+IGA G T ++L GA+ V ++ Sbjct: 71 LKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVD 115 >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus HB8} PDB: 2eq7_A* Length = 455 Score = 31.1 bits (70), Expect = 0.32 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 19/132 (14%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF---------FP--ILKDIS---SQHP 94 ++ IGAGPG LG KV V+EK++ P L + + + Sbjct: 4 LLVIGAGPGGYVAAIRAAQLGM-KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAK 62 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 L + +++D ++ +++ + N I+ + S + Sbjct: 63 KGLLGAKVKGVELDLPAL--MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVL 120 Query: 155 QKEVGERITAQK 166 +E GE + A+ Sbjct: 121 VEETGEELEARY 132 >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 Score = 30.8 bits (69), Expect = 0.32 Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 18/147 (12%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDA 104 T+ +IG G G++ L + + E ++ + + + +Q A Sbjct: 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA 84 Query: 105 LKVDFEKFFNISSPIRIIANLPYNI----------GTRLLFNWISADTWPPFWESLTLLF 154 + + N + G RL+ N ++ ++ E + Sbjct: 85 PRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVES-----EQMLWAL 139 Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWR 181 +K+ G I+ H + + Sbjct: 140 RKQFGGTIS-SFAISHEHTVGSFITMK 165 >1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase; HET: FAD; 2.30A {Trypanosoma cruzi} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1gxf_A* 1bzl_A* 1nda_A* Length = 485 Score = 30.7 bits (68), Expect = 0.35 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88 ++ IGAG G L TL ++V VI+ P Sbjct: 6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFS 45 >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 Score = 30.8 bits (69), Expect = 0.37 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%) Query: 54 IGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILK 87 IGAG G L TL ++V V++ P Sbjct: 13 IGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFY 48 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 Score = 30.9 bits (69), Expect = 0.38 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 3/91 (3%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 L Y + + ++ + +++ + V+++G G G + L LG V Sbjct: 89 LGFYCKKEDYFSKKYNTTAIH--GDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY-DV 145 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 + ++ L + + + D Sbjct: 146 TSWDHNENSIAFLNETKEKENLNISTALYDI 176 >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A Length = 227 Score = 30.8 bits (69), Expect = 0.38 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 2/88 (2%) Query: 48 GITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 G +V+ +G G + + K+ IE + L I + N + I+ D Sbjct: 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATK 133 Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRL 133 ++ I P + Sbjct: 134 PEEYRALVPKVDVIFEDVAQPTQAKILI 161 >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* Length = 265 Score = 30.4 bits (67), Expect = 0.45 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%) Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 +Y + L L LK + + G++ G +I+IG+GP + + Sbjct: 24 KYYSFGSRHCAENEILRHL--LKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTE 81 Query: 73 VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 +IV + Q L+ + P + D E Sbjct: 82 IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRM 123 >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 Score = 30.5 bits (68), Expect = 0.46 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 6/157 (3%) Query: 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 I+ + F LD ++A G V+++ G GA +VI Sbjct: 187 AKFIVDMRGQKTGFFLD-QRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIG 245 Query: 76 IEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 I+K + K+ + +R++ I A + + ++ + P + Sbjct: 246 IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEK 305 Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 + + L L+ K+ G +T S H Sbjct: 306 DLKAGLRAYFNVNFAGLNLV--KDGGILVTCS-CSQH 339 >1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus HB8} SCOP: c.90.1.1 PDB: 1v9a_A Length = 239 Score = 30.3 bits (67), Expect = 0.48 Identities = 17/112 (15%), Positives = 28/112 (25%), Gaps = 17/112 (15%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI---------------VIEKDQQFFPILKDISSQHP 94 V +GAGPG+ LLTL A +++ V+ + + Sbjct: 2 RVYLVGAGPGDPE--LLTLKAYRLLKEAPVVLYDRLVDERVLALAPGEKVYVGKEEGESE 59 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146 + EI + F + L P Sbjct: 60 KQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPG 111 >1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A* Length = 285 Score = 30.2 bits (67), Expect = 0.48 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 + IGAGPG+ L+T+ K++ Sbjct: 22 KLYIIGAGPGDPD--LITVKGLKLL 44 >3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin monooxygenase, oxidoreductase; HET: FAD; 2.10A {Mesorhizobium loti} PDB: 3gmc_A* Length = 415 Score = 30.4 bits (67), Expect = 0.49 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 12/98 (12%) Query: 51 VIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 G G LT + L V + EK + I N L +++ Sbjct: 50 AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI-YLWHNGLRVLEG------- 101 Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147 + ++ P T + +S +T+ Sbjct: 102 ---LGALDDVLQGSHTPPTYETWMHNKSVSKETFNGLP 136 >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A* Length = 490 Score = 30.2 bits (67), Expect = 0.50 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88 ++ IGAG G L +L ++V VI+ + P Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYA 45 >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Length = 258 Score = 30.4 bits (68), Expect = 0.52 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 13/81 (16%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD------ 88 + K + V++ AG G +L ++G +V ++E++ +L D Sbjct: 78 VAKAVGIKGDY--LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGY 134 Query: 89 ----ISSQHPNRLEIIQDDAL 105 I RL++I +L Sbjct: 135 ADAEIGGWLQERLQLIHASSL 155 >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 Score = 30.3 bits (67), Expect = 0.53 Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 ++ + + L+ L + S++ VI++G G GNL +LL + + I Sbjct: 1 MLKNEETEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQIT 57 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 Score = 30.3 bits (68), Expect = 0.56 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 12/90 (13%) Query: 48 GITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQ 101 G V+E GAG G LT LL A +VI E+ + S P+ ++ Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV 159 Query: 102 DDALKVDFEK------FFNISSPIRIIANL 125 D + ++ +P ++ + Sbjct: 160 SDLADSELPDGSVDRAVLDMLAPWEVLDAV 189 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 Score = 30.0 bits (67), Expect = 0.63 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Query: 48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQ 81 + +GAGP +++ L LG + + EK + Sbjct: 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222 >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 Score = 30.1 bits (67), Expect = 0.65 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Query: 48 GITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKD-----ISSQHPNRLEIIQ 101 + ++GAG G + L +V + E+ Q+ + ++ R+E+++ Sbjct: 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLE 96 Query: 102 DDALKVDFEKFFNISSPIR---IIANLPYN 128 D + +I N PYN Sbjct: 97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYN 126 >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 Score = 29.9 bits (66), Expect = 0.67 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 I + I G G T I+IG+GPG L+ L + ++ + Sbjct: 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNE 80 >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421 Score = 29.8 bits (66), Expect = 0.78 Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 11/131 (8%) Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKD 79 + +G+ ++ + + + G V+E G + +E D Sbjct: 15 PRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEID 73 Query: 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 + + E I D L + + F++ + + Sbjct: 74 PKALDLPP--------WAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAV 125 Query: 140 ADTWPPFWESL 150 D + + + Sbjct: 126 KDLYKKAFSTW 136 >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 Score = 29.4 bits (65), Expect = 0.85 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 + +GAGPG LG KV ++EK Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN 36 >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 Score = 29.5 bits (65), Expect = 0.87 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 V IG+G + + GA +V +IE+ Sbjct: 7 VAVIGSGGAAMAAALKAVEQGA-QVTLIERG 36 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 Score = 29.3 bits (65), Expect = 0.87 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 16/127 (12%) Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 L I E +++ G G G + LL K+ I+ + +K+ Sbjct: 9 YLPNIFEGKKG----VIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVI 63 Query: 95 NRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI----GTRLLFNWISADT--WP 144 + + VD F ++ +I+ + I G ++ +W +T P Sbjct: 64 TLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEV-KRILKDDGRVIIIDWRKENTGIGP 122 Query: 145 PFWESLT 151 P + Sbjct: 123 PLSIRMD 129 >2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* Length = 295 Score = 29.4 bits (65), Expect = 0.88 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 + +G GPG+L LT AR+ + Sbjct: 3 ELFLVGMGPGDLP--GLTQRAREAL 25 >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373 Score = 29.6 bits (65), Expect = 0.88 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 14/124 (11%) Query: 48 GITVIEIGAGPGNL--TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----------- 94 G G G L GA ++I ++ ++ F K+ + Sbjct: 191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQ 250 Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154 L + D + FE N +R + + ++A L+ Sbjct: 251 EVLIEMTDGGVDYSFECIGN-VKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVT 309 Query: 155 QKEV 158 + Sbjct: 310 GRTW 313 >2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Length = 259 Score = 29.5 bits (65), Expect = 0.89 Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 ++I + GPG+ L+T+ A + Sbjct: 6 SIISVSLGPGDPG--LITVKALSQL 28 >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus} Length = 282 Score = 29.5 bits (66), Expect = 0.91 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV--IVIEKDQQFFPIL 86 L+ + E V+++G G G + +L +KV + PI+ Sbjct: 79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM 132 >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H} Length = 492 Score = 29.5 bits (65), Expect = 0.92 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%) Query: 51 VIEIGAGPGNLT-QMLLTLGARKVIVIEKD 79 V IG G + KV++IE Sbjct: 11 VAIIGTGTAGMGAYRAAKKHTDKVVLIEGG 40 >2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} Length = 232 Score = 29.5 bits (65), Expect = 1.00 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 +I +G GPG+ LLTL A V+ Sbjct: 4 KLIGVGVGPGDSE--LLTLRAVNVL 26 >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavoprotein, FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 Score = 29.3 bits (65), Expect = 1.1 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 V+ +G GPG + G KV ++E+ + Sbjct: 9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTL 41 >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... Length = 478 Score = 29.2 bits (64), Expect = 1.1 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 + IG G G L + LGA + V+E + Sbjct: 23 YLVIGGGSGGLASARRAAELGA-RAAVVESHK 53 >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 Score = 29.1 bits (64), Expect = 1.1 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 I IG G G + G K +IE + Sbjct: 7 YIAIGGGSGGIASINRAAMYGQ-KCALIEAKE 37 >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ binding, reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori 26695} PDB: 2q0k_A* Length = 311 Score = 29.1 bits (64), Expect = 1.1 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 IG GP L+ G + ++ EK Sbjct: 4 CAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM 35 >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 Score = 29.3 bits (65), Expect = 1.1 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 6/94 (6%) Query: 47 DGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103 G ++++G+ L L+ G + I E + + H ++++ + Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLAN 74 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 L E + IA + + R+L Sbjct: 75 GLAAFEETDQVS---VITIAGMGGRLIARILEEG 105 >1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrinogen-III methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1 Length = 280 Score = 29.1 bits (64), Expect = 1.1 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 +V +GAGPG+ LLTL A + Sbjct: 16 SVWLVGAGPGDPG--LLTLHAANAL 38 >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural genomics, protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376 Score = 28.9 bits (63), Expect = 1.2 Identities = 23/165 (13%), Positives = 40/165 (24%), Gaps = 5/165 (3%) Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD--DALK 106 + VI++ +G G L+ G + +E DQ P L + +D Sbjct: 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHA---INFPRSLHVQEDVSLLNA 59 Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 + FF PI I P G + D+ + L + A+ Sbjct: 60 EIIKGFFKNDMPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAEN 119 Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 + + D Sbjct: 120 VPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASDYGAPTIRTR 164 >2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, structural genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae} Length = 251 Score = 29.0 bits (64), Expect = 1.2 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 T+ IG G G+ LTL A + Sbjct: 4 TIYVIGIGTGSPE--FLTLQAISGL 26 >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 Score = 29.0 bits (64), Expect = 1.2 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 V+ IG GP LG +EK + Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKL 40 >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 Score = 29.0 bits (64), Expect = 1.3 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 6/94 (6%) Query: 47 DGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103 + +IG+ L + A I E F + ++++ + + Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGN 80 Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137 L V + +IA + + +L Sbjct: 81 GLAVI---EKKDAIDTIVIAGMGGTLIRTILEEG 111 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 Score = 29.1 bits (64), Expect = 1.3 Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82 L + +++ V++IGAG G+ + I ++ ++ Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEM 55 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 Score = 29.1 bits (64), Expect = 1.3 Identities = 19/169 (11%), Positives = 43/169 (25%), Gaps = 18/169 (10%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93 + G ++++G+G G + I+ F K + + Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 84 Query: 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI------------GTRLLFNWISAD 141 R+ I +DA + ++++ + G +L Sbjct: 85 SERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR 144 Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190 P E + +T P G+ ++ D Sbjct: 145 QLPATEEIAQACGVSSTSDFLTL----PGLVGAFDDLGYDVVEMVLADQ 189 >1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1 Length = 235 Score = 28.7 bits (63), Expect = 1.3 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 V +GAG G LTL A +V+ Sbjct: 4 KVYLVGAGFGGPE--HLTLKALRVL 26 >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 Score = 28.8 bits (63), Expect = 1.3 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 32/185 (17%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPN 95 K+ + G +G+TV+++G G G L + KV I+ ++ + ++ Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL 87 Query: 96 RLEIIQDDALK------------VDFEKFFNISSPIRIIANLPYNI--GTRLL---FNWI 138 + + F +S P++ + L L + Sbjct: 88 KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE 147 Query: 139 SADTWPPF------WESLTLLFQKEVGERITAQKNSP--HYGRLSVLTGWRTKATMM--- 187 D PP WE +L ++ G R+ +G +++ + +M Sbjct: 148 ERDKGPPPEEVYSEWEVGLIL--EDAGIRVGRVVEVGKYCFGVYAMIVKQEEENPLMNVP 205 Query: 188 FDISP 192 F I P Sbjct: 206 FKIPP 210 >1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Length = 268 Score = 29.0 bits (64), Expect = 1.3 Identities = 2/21 (9%), Positives = 10/21 (47%), Gaps = 2/21 (9%) Query: 54 IGAGPGNLTQMLLTLGARKVI 74 +G G ++ +++ + + Sbjct: 18 VGLGLWDVK--DISVKGLEAV 36 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 28.7 bits (64), Expect = 1.3 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 9/37 (24%) Query: 247 ENLLHQAGIETNLRAENLSIEDFC-----RITNILTD 278 E++ +AG R NL+I C I+ Sbjct: 5 ESIDKRAG----RRGPNLNIVLTCPECKVYPPKIVER 37 >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* Length = 474 Score = 28.9 bits (64), Expect = 1.4 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 V IG+GPG LG K + IEK++ Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGF-KTVCIEKNETL 41 >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 Score = 29.0 bits (63), Expect = 1.4 Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVI-----EKDQQFFPILKDISSQHPNRLEIIQDDA 104 ++++G GPG T + +I + ++K+ S + + Sbjct: 39 LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98 Query: 105 LKVDF 109 F Sbjct: 99 DDFKF 103 >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} Length = 297 Score = 28.8 bits (63), Expect = 1.4 Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 VI IG L+ L + +++++ + Sbjct: 5 VIIIGGSYAGLSAALQLGRAR-KNILLVDAGE 35 >3be6_A Putative iron compound-binding protein of ABC transporter family; open form, closed form, group III periplasmic binding protein; HET: MSE; 1.82A {Escherichia coli O157} PDB: 3be5_A* Length = 297 Score = 28.8 bits (63), Expect = 1.4 Identities = 16/117 (13%), Positives = 25/117 (21%), Gaps = 8/117 (6%) Query: 57 GPGNLTQMLLTLGARKVIV---IEKDQQFFPILKDISSQHPNRLEIIQDDALK-VDFEKF 112 ++T L+ LG V D F + + I +D E Sbjct: 27 HDLDITIPLIELGVPPVASHGRTRPDGSHFIRSGALLTGVDFDNSSIAFIGTADIDIEAI 86 Query: 113 FNISSPIRIIANLPYNIGTRLL---FNWISADTWPPFWESLTLLFQKEVGERITAQK 166 + I RL E L + G + Sbjct: 87 VAAKPDLIITEPTRNTPIERLEKIAPTVSIDHLKGGAPEIYRKLAEL-TGTQSQLAI 142 >3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987} Length = 230 Score = 28.6 bits (62), Expect = 1.4 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%) Query: 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62 MN+ +SL Y+ Y ++ N+LK I + V++IG G L Sbjct: 2 MNSPKNSL------YEEKSGHYYNA---VNPNLLKHI-----KKEWKEVLDIGCSSGALG 47 Query: 63 QMLLTLGA 70 + G Sbjct: 48 AAIKENGT 55 >2p7i_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 Score = 28.7 bits (63), Expect = 1.5 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 7/84 (8%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MT++ + K NF D+ + + ++E+G+ G+ Sbjct: 2 MTIS------RNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGD 55 Query: 61 LTQMLLTLGARKVIVIEKDQQFFP 84 T L + +E ++ Sbjct: 56 FTSRLQEHFN-DITCVEASEEAIS 78 >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284 Score = 28.8 bits (63), Expect = 1.5 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEK 78 V+ +GAG L+ + +V +IE+ Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 71 >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Length = 320 Score = 28.9 bits (64), Expect = 1.5 Identities = 19/193 (9%), Positives = 60/193 (31%), Gaps = 17/193 (8%) Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 + +S D + V IG+ L G +++V++ F Sbjct: 26 NGLKKSGE--DKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDF--------DPDVF 75 Query: 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 + AL + ++ ++ + + + D + ++ L+ + Sbjct: 76 EASVS--ALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFAT-DVYIVEYQGDELVATR 132 Query: 157 EV-GERITAQKNSPHYGRLSVL---TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 +++ + + P + + + ++ + +V PS + S ++ Sbjct: 133 GGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVG 192 Query: 213 NPIPCCLESLKKI 225 + ++ I Sbjct: 193 GGNDIDITTVDFI 205 >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 Score = 28.8 bits (63), Expect = 1.5 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 + IG G G + + + GA K +++E Sbjct: 14 YLVIGGGSGGVASARRAASYGA-KTLLVEAK 43 >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 Score = 28.8 bits (64), Expect = 1.5 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 3/29 (10%) Query: 54 IGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 IG+G G + ++ LG +V + E+ + Sbjct: 32 IGSGSGGVRAARLAGALGK-RVAIAEEYR 59 >1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI; 2.90A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.56.2.1 Length = 268 Score = 28.8 bits (64), Expect = 1.6 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE----------------SSG 44 M++ K ++ L Y + ++L N + + Sbjct: 1 MSLKTKQEIVENWLPRYTQRQLIDF-EPYILLTNFSHYLHVFAEHYGVPIVGEHTSMPNA 59 Query: 45 SLDGITVIEIGAGPGN---LTQMLLTLGARKVIVI 76 S +G+T+I G G N + +L + + VI + Sbjct: 60 SAEGVTLINFGMGSANAATIMDLLWAIHPKAVIFL 94 >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 Score = 28.5 bits (62), Expect = 1.6 Identities = 19/167 (11%), Positives = 44/167 (26%), Gaps = 18/167 (10%) Query: 51 VIEIGAGPGNLT---QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 ++ IGAGP L Q+ + ++EK+ + + + + + + Sbjct: 3 ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVL-PGRPGQHPANPLSYL 61 Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167 D P R+ + T + ++ +Q Sbjct: 62 DA--------PERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGI 113 Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214 + + + + + + V HF L P Sbjct: 114 AIRFES------PLLEHGELPLADYDLVVLANGVNHKTAHFTEALVP 154 >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} Length = 464 Score = 28.8 bits (63), Expect = 1.6 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 V+ +GAGPG LG ++E Sbjct: 6 VVVLGAGPGGYVAAIRAAQLGL-STAIVEPK 35 >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 Score = 28.5 bits (63), Expect = 1.7 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 +D K+ AE+ D V+ +G+GP G + ++ + Sbjct: 194 KVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKG-IRTGLMGER 244 >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 Score = 28.7 bits (63), Expect = 1.7 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 +I IG G G + + A KV ++EK + Sbjct: 5 LIVIGGGSGGMAAARRAARHNA-KVALVEKSR 35 >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300 Score = 28.4 bits (63), Expect = 1.8 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RKVIVIEKDQQFFPIL 86 ++ + E V+++G G G + K + + PI Sbjct: 70 IRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH 123 >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} Length = 472 Score = 28.6 bits (62), Expect = 1.8 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 7/81 (8%) Query: 51 VIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQFF----PILKDISSQHPNRLEIIQDD 103 V+ IGA L V +I++ + I +S + N + Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATP 65 Query: 104 ALKVDFEKFFNISSPIRIIAN 124 V +FF I+ + + Sbjct: 66 YNVVRDPEFFRINKDVEALVE 86 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Length = 275 Score = 28.4 bits (63), Expect = 1.9 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPN 95 I G G+ ++E+G G GN++ +L G + V+E+D+ D S+ + Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 160 >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180 Score = 28.4 bits (63), Expect = 1.9 Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 G+TV+++GA PG +Q ++T K +I D + + + + + AL Sbjct: 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALL 81 >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I; coenzyme A, flavin adenine dinucleotide, selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 Score = 28.6 bits (62), Expect = 1.9 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 12/82 (14%) Query: 41 ESSGSLDGITVIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQFF----PILKDISSQH 93 + GS++ + IG ++ ++ V+ +EK + + + IS Sbjct: 32 DRWGSMN---YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAI 88 Query: 94 PNRLEIIQDDALKVDFEKFFNI 115 + ++I + F + I Sbjct: 89 ASTEKLIARNV--KTFRDKYGI 108 >2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refolding, transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana} Length = 420 Score = 28.3 bits (62), Expect = 1.9 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 6/87 (6%) Query: 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 + + +K + ++ L + S D + + E+G G N ++ + + Sbjct: 3 FEEFTPLNEKSLVD-YIKSTPALSSKIGADKSDDDLVIKEVGDGNLNFV-FIVVGSSGSL 60 Query: 74 IVIEKDQQFFPILKDISSQHPNRLEII 100 ++ +Q P ++ I P E Sbjct: 61 VI----KQALPYIRCIGESWPMTKERA 83 >3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Length = 292 Score = 28.6 bits (63), Expect = 1.9 Identities = 4/21 (19%), Positives = 9/21 (42%), Gaps = 2/21 (9%) Query: 54 IGAGPGNLTQMLLTLGARKVI 74 IG G + +T+ + + Sbjct: 26 IGLGLYDEK--DITVRGLEAV 44 >2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative splicing, electron transport, FAD, flavoprotein, NADP, nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 513 Score = 28.4 bits (62), Expect = 2.0 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88 +I IG G G L + G KV+V++ + Sbjct: 29 LIIIGGGSGGLAAAKEAAQYGK-KVMVLDFVTPTPLGTRW 67 >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 Score = 28.3 bits (62), Expect = 2.1 Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 VI IG+GP T +V E Sbjct: 17 VIVIGSGPAGYTAALYAARAQ-LAPLVFEGTS 47 >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 Score = 28.2 bits (62), Expect = 2.1 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 +I IG G G L + G +V +IE Sbjct: 7 LIAIGGGSGGLAVAEKAAAFGK-RVALIESKA 37 >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* Length = 464 Score = 28.5 bits (63), Expect = 2.1 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 +I IG GPG LG KV+ +E + Sbjct: 9 LIVIGTGPGGYHAAIRAAQLGL-KVLAVEAGE 39 >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497 Score = 28.3 bits (62), Expect = 2.1 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQF 82 + +GAGP G + L L +V+++EK +F Sbjct: 95 CLVVGAGPCGLRAAVELALLGARVVLVEKRIKF 127 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Length = 225 Score = 28.4 bits (62), Expect = 2.1 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%) Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75 ++ E G D + I++G G G L + Sbjct: 16 ELTEIIGQFDRV-HIDLGTGDGRNIYKLAINDQNTFYI 52 >1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus WR} SCOP: c.66.1.25 PDB: 1vp3_A* Length = 348 Score = 28.3 bits (63), Expect = 2.2 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 15/114 (13%) Query: 17 YKIIPKKYMGQNFLL--DLNILKKIAESSGSLDGITVIEIGAGPGN----LTQMLLTLGA 70 Y GQ LL +L L K+ G LDG TV+ IG+ PG L LG Sbjct: 44 EVAKKLPYQGQLKLLLGELFFLSKLQRH-GILDGATVVYIGSAPGTHIRYLRDHFYNLGV 102 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ---DDALKVDFEKFFNISSPIRI 121 ++ + PIL + + ++ D+ +K + S I I Sbjct: 103 IIKWMLIDGRHHDPILNGLR-----DVTLVTRFVDEEYLRSIKKQLHPSKIILI 151 >2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... Length = 265 Score = 28.2 bits (62), Expect = 2.2 Identities = 4/21 (19%), Positives = 9/21 (42%), Gaps = 2/21 (9%) Query: 54 IGAGPGNLTQMLLTLGARKVI 74 IG G + +T+ ++ Sbjct: 6 IGLGLYDER--DITVKGLEIA 24 >3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} Length = 397 Score = 28.3 bits (61), Expect = 2.2 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 6/104 (5%) Query: 51 VIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALK 106 V+ +G GP G+ K ++IEK + + +S N +I D + Sbjct: 7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFI 66 Query: 107 VDFEKFFNISSP--IRIIANLPYNIGTRLLFNWISADTWPPFWE 148 + K I P R I G + + Sbjct: 67 ANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAA 110 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Length = 267 Score = 28.0 bits (61), Expect = 2.3 Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 LK ++ + + +IG G G T +L +V ++ F Sbjct: 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFID 83 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 Score = 27.9 bits (61), Expect = 2.4 Identities = 7/28 (25%), Positives = 12/28 (42%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIV 75 V++IG G G ++ G + V Sbjct: 42 CRRVLDIGCGRGEFLELCKEEGIESIGV 69 >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 Score = 28.1 bits (61), Expect = 2.4 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 4/33 (12%) Query: 51 VIEIGAGPGNLTQML----LTLGARKVIVIEKD 79 ++ +G GP L +V VI+ D Sbjct: 5 IVILGGGPAGYEAALVAATSHPETTQVTVIDCD 37 >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 Score = 27.9 bits (61), Expect = 2.5 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 V+ IG GP LT +++EK Sbjct: 11 VVIIGGGPAGLTAAIYTGRAQ-LSTLILEKGM 41 >1dxl_A Dihydrolipoamide dehydrogenase; multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex, flavoprotein; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 Score = 28.1 bits (62), Expect = 2.5 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 42 SSGSLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 +SGS D V+ IG GPG LG K IEK Sbjct: 1 ASGS-DENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGAL 41 >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 Score = 28.0 bits (61), Expect = 2.5 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 8/80 (10%) Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-------VIEKDQQFFPILK-DISSQH 93 ITV+++G G G K++ +++ QQ + +K S++ Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88 Query: 94 PNRLEIIQDDALKVDFEKFF 113 E I D+ K F Sbjct: 89 IFSAEFITADSSKELLIDKF 108 >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.79A {Cyanidioschyzon merolae strain 10D} Length = 281 Score = 27.8 bits (61), Expect = 2.6 Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 + + G TV E+GAG G ++ + GA +V+ + Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD 112 >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 Score = 27.9 bits (61), Expect = 2.6 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKD 88 ++ IG G G L + LG KV V + + K Sbjct: 9 LLVIGGGSGGLACAKEAAQLGK-KVAVADYVEPSPRGTKW 47 >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191 Score = 27.8 bits (61), Expect = 2.7 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 28/124 (22%) Query: 1 MTMNNKSHSLKTILSHYKI--IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58 M++ +S + +K+ + +Y +++K G VIEIG+ P Sbjct: 1 MSLQLRSRA------AFKLEFLLDRY---------RVVRK---------GDAVIEIGSSP 36 Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 G TQ+L +L + + + ++ + + I + EK ++ Sbjct: 37 GGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 Query: 117 SPIR 120 S Sbjct: 97 SDAM 100 >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A Length = 241 Score = 27.7 bits (61), Expect = 2.7 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFF--PILKDISSQ---HPNRLEIIQ 101 GIT+I+ PG + L V + + D + + + + + + I Sbjct: 14 GITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIY 73 Query: 102 DDALKVDFEK 111 A + +++ Sbjct: 74 APAGREMWQR 83 >1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} Length = 336 Score = 27.8 bits (59), Expect = 2.8 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 + IG G L+ Q L G +V + +K Sbjct: 5 IAIIGTGIAGLSAAQALTAAG-HQVHLFDKS 34 >1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Length = 84 Score = 27.8 bits (62), Expect = 2.8 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Query: 240 SLKRLGGENLLHQAGIETNLRA-----ENLSIEDFCRITNILTD 278 S GG ++L +A IE NL + N++ E+ + I Sbjct: 2 SSGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 45 >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 Score = 27.7 bits (61), Expect = 2.8 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 47 DGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103 G ++++G+ L LL +G I E + S+H +++++ + Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN 80 Query: 104 ALKVDFEKFFNISSPI 119 L E + I Sbjct: 81 GLSAFEEADNIDTITI 96 >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Length = 269 Score = 27.9 bits (62), Expect = 2.8 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%) Query: 51 VIEIGAGPGNLTQMLLTL-GARKV--IVIEKDQQFFPIL 86 V+++G G G + T+ ++V P+L Sbjct: 77 VVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPML 115 >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 Score = 28.0 bits (61), Expect = 2.9 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 3/34 (8%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 V+ IGAG L V++ + + Sbjct: 7 VVVIGAGGAGYHGAFRLAKAKY-NVLMADPKGEL 39 >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* 2uz4_A* ... Length = 327 Score = 27.6 bits (60), Expect = 2.9 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 L G+ I++ AG G L + GA V E D+ + + N E + D Sbjct: 8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEM------NFGEKPEGDI 61 Query: 105 LKVDFEKFFNI 115 +V+ + + Sbjct: 62 TQVNEKTIPDH 72 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Length = 284 Score = 27.9 bits (61), Expect = 3.0 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 48 GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 + +++ G G G L +L+ L K I+ + +++ P E ++ DA Sbjct: 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT 82 Query: 106 KVDFEKFFNI 115 +++ ++I Sbjct: 83 EIELNDKYDI 92 >3fet_A Electron transfer flavoprotein subunit alpha related protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} Length = 166 Score = 27.9 bits (62), Expect = 3.0 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 D+N L+++ + + IG G LG++ + +K F + + I Sbjct: 12 DMNFLRQVNTLVAGKGDMDSVIIGEGD------AKGLGSKVLYRAKKGTPFDAVSEGILK 65 >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} Length = 243 Score = 27.8 bits (60), Expect = 3.0 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72 Y + + G + + L+ + + G+ ++++G G G + GA Sbjct: 16 YSQLGRSIEGLDGAAEWPALRAML---PEVGGLRIVDLGCGFGWFCRWAHEHGASY 68 >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 Score = 27.7 bits (61), Expect = 3.2 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 V+ IG GPG LG K +EK Sbjct: 5 VVVIGGGPGGYVASIKAAQLGM-KTACVEKRGAL 37 >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, disulphide bond, oxidoreductase; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus PY2} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* Length = 523 Score = 27.6 bits (60), Expect = 3.3 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 I IG G L +G R++IV Sbjct: 46 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF 77 >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 Score = 27.6 bits (61), Expect = 3.5 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 11/114 (9%) Query: 48 GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103 G +I+ G G G + +L KV EK ++F + + ++ R+ I D Sbjct: 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD 172 Query: 104 AL-----KVDFEKFFNISSPIRIIANLPYNI--GTRLLFNWISADTWPPFWESL 150 K F ++ P I + G R + + + L Sbjct: 173 ISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKL 226 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Length = 252 Score = 27.3 bits (59), Expect = 3.6 Identities = 14/89 (15%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 + +++ +++I + + V+++ G G T L G V+ ++ ++ Sbjct: 19 RIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYE-VVGLDLHEEMLR 77 Query: 85 ILKDISSQHPNRLEIIQDDALKVDFEKFF 113 + + + + ++E +Q D L++ F+ F Sbjct: 78 VARRKAKERNLKIEFLQGDVLEIAFKNEF 106 >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 Score = 27.4 bits (60), Expect = 3.6 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 ++ IG GPG LG +++E Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ 37 >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 Score = 27.4 bits (60), Expect = 3.7 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 VI IGAGPG LG K +IEK + Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK 36 >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 Score = 27.3 bits (59), Expect = 3.7 Identities = 8/23 (34%), Positives = 12/23 (52%) Query: 51 VIEIGAGPGNLTQMLLTLGARKV 73 V+++G G G L + L G V Sbjct: 56 VLDLGCGEGWLLRALADRGIEAV 78 >3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} Length = 326 Score = 27.3 bits (59), Expect = 3.7 Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 3/32 (9%) Query: 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 V IG+GP T L K I+ E Sbjct: 13 VTIIGSGPAAHTAAIYLARAE-IKPILYEGMM 43 >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 Score = 27.3 bits (59), Expect = 3.8 Identities = 2/37 (5%), Positives = 11/37 (29%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 + +++++ G G + + + Sbjct: 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLT 76 >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* Length = 307 Score = 27.1 bits (60), Expect = 4.8 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 15/114 (13%) Query: 17 YKIIPKKYMGQNFLL--DLNILKKIAESSGSLDGITVIEIGAGPGN----LTQMLLTLGA 70 Y GQ LL +L L K+ G LDG TV+ IG+ PG L LG Sbjct: 29 EVAKKLPYQGQLKLLLGELFFLSKLQRH-GILDGATVVYIGSAPGTHIRYLRDHFYNLGV 87 Query: 71 RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ---DDALKVDFEKFFNISSPIRI 121 ++ + PIL + + ++ D+ +K + S I I Sbjct: 88 IIKWMLIDGRHHDPILNGLR-----DVTLVTRFVDEEYLRSIKKQLHPSKIILI 136 >2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein, icosahedral virus; 3.50A {Bluetongue virus} SCOP: e.28.1.1 Length = 901 Score = 27.1 bits (60), Expect = 4.9 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 65 LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119 + +KV I + + F IL DI ++ +E+ + + L V+F+ + + Sbjct: 126 FYSTIIKKVRFI-RGKGSF-ILHDIPARDHRGMEVAEPEVLGVEFKNVLPVLTAE 178 >2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661} Length = 183 Score = 27.0 bits (59), Expect = 5.2 Identities = 12/68 (17%), Positives = 26/68 (38%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 V+++G G G +T + + D ++++ + +II+ A Sbjct: 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED 94 Query: 107 VDFEKFFN 114 V + FN Sbjct: 95 VLDKLEFN 102 >1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A Length = 362 Score = 26.9 bits (59), Expect = 5.3 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 4/96 (4%) Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 P K+ ++ A PH+ + + ++ + Sbjct: 107 AKPLTAETYKQMLKDGVKKAVAFSQYPHFSY----STTGSSINELWRQIKALDSERSISW 162 Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238 S + + + I E++ K QE R + Sbjct: 163 SVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVV 198 >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodanese, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 Score = 26.9 bits (58), Expect = 5.5 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 9/72 (12%) Query: 51 VIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQF----FPILKDISSQHPNRLEIIQDD 103 ++ +G G + L L ++I++E+ + + I R +++ Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQT 98 Query: 104 ALKVDFEKFFNI 115 K FN+ Sbjct: 99 V--ERMSKRFNL 108 >3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* Length = 437 Score = 26.9 bits (59), Expect = 5.5 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQ--EAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 ++ S +I FI P E ++ I + GK R+ L +++KR+G + LL G + Sbjct: 339 AQMGSLLIPFIAAEEPFDEVKEVIENIWEWWMEEGKNRERLGETMKRVGFQKLLEVTGTK 398 >2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 437 Score = 26.8 bits (59), Expect = 5.5 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQ--EAFGKRRKTLRQSLKRLGGENLLHQAGIE 256 ++ S ++ F+ P E ++KI GK R+ L +++KRL + LL I Sbjct: 339 AQMGSLLVPFVAAEEPFDEIKEVVEKIWDWWMEEGKNRERLGETMKRLSFQKLLEVTEIA 398 >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 Score = 26.7 bits (58), Expect = 5.7 Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 19/135 (14%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 V+++G G G T L G + + ++ + K+ +L Sbjct: 54 EAEVLDVGCGDGYGTYKLSRTGYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPF 112 Query: 108 DFEKF---------FNISSPIRIIANLPYNI---GTRLLFNWISADTWPPFWESLTLLFQ 155 + E+F P+R + + + P + + Sbjct: 113 ENEQFEAIMAINSLEWTEEPLRALNEI-KRVLKSDGYACI-----AILGPTAKPRENSYP 166 Query: 156 KEVGERITAQKNSPH 170 + G+ + P Sbjct: 167 RLYGKDVVCNTMMPW 181 >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, ATP-binding, capsid protein, cleavage on PAIR of basic residues; HET: GTA SAH; 1.45A {Yellow fever virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 Score = 26.8 bits (59), Expect = 5.8 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 3/54 (5%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV--IVIEKDQQFFPIL 86 L+ E VI++G G G V + +D P+ Sbjct: 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN 116 >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Length = 265 Score = 26.8 bits (59), Expect = 5.8 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%) Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI---VIEKDQQFFPIL 86 L + E V+++G G G + + + + P + Sbjct: 63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRI 116 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Length = 225 Score = 26.8 bits (59), Expect = 6.3 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 10/56 (17%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEI 54 ++M +K+ + I +I+P + + +A++ +G GI +E+ Sbjct: 10 LSMADKAARIDAICEKARILPVIT-----IAREEDILPLADALAAG---GIRTLEV 57 >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Length = 457 Score = 26.6 bits (58), Expect = 6.4 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 50 TVIEIGAGPGNLTQMLLTLGARKVI 74 V+ +GAGPG+ LLTL + I Sbjct: 217 EVVLVGAGPGDAG--LLTLKGLQQI 239 >3doa_A Fibrinogen binding protein; structural genomics, MCSG., PSI-2, protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} Length = 288 Score = 26.5 bits (58), Expect = 6.7 Identities = 9/69 (13%), Positives = 16/69 (23%), Gaps = 3/69 (4%) Query: 212 LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGIETNLRAENLSIED 268 +NP + K G K L + ++ + T+ E Sbjct: 169 INPYDITGAEVLKYIDFNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMTSSTLPEAFDEV 228 Query: 269 FCRITNILT 277 T Sbjct: 229 MAETKLPPT 237 >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 Score = 26.5 bits (58), Expect = 7.3 Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 G+ ++E+G G G ++ + V IE+ + Sbjct: 91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV 127 >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320 Score = 26.6 bits (58), Expect = 7.4 Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 1/31 (3%) Query: 51 VIEIGAGPGNLTQML-LTLGARKVIVIEKDQ 80 ++ +G+GP T + + ++I + Sbjct: 8 LLILGSGPAGYTAAVYAARANLQPVLITGME 38 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia virus} Length = 302 Score = 26.3 bits (57), Expect = 7.8 Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 11/81 (13%) Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL---------- 97 V+ I G G + ++ + D + ++ + + Sbjct: 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYI 108 Query: 98 -EIIQDDALKVDFEKFFNISS 117 E I+ D + F Sbjct: 109 QETIRSDTFVSSVREVFYFGK 129 >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 Score = 26.2 bits (57), Expect = 7.9 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 3/91 (3%) Query: 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 V+++G G G L+ + ++ + + + + + E+ + Sbjct: 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVF 255 Query: 106 KVDFEKFFNISS--PIRIIANLPYNIGTRLL 134 +F I S P + L+ Sbjct: 256 SEVKGRFDMIISNPPFHDGMQTSLDAAQTLI 286 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 Score = 26.4 bits (57), Expect = 8.0 Identities = 14/127 (11%), Positives = 33/127 (25%), Gaps = 21/127 (16%) Query: 46 LDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 G V+++G G+LT + G +++ ++ D + + + Sbjct: 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDID--------------SRLIHSARQNI 90 Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 + + L + G + F SLT ++ Sbjct: 91 ------RHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPL 144 Query: 165 QKNSPHY 171 Sbjct: 145 DGADTSV 151 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.138 0.409 Gapped Lambda K H 0.267 0.0443 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,461,546 Number of extensions: 116529 Number of successful extensions: 597 Number of sequences better than 10.0: 1 Number of HSP's gapped: 567 Number of HSP's successfully gapped: 185 Length of query: 284 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 193 Effective length of database: 3,487,026 Effective search space: 672996018 Effective search space used: 672996018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.1 bits)