HHsearch alignment for GI: 254780399 and conserved domain: COG5000

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].

Probab=96.57  E-value=0.0077  Score=40.03  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=24.7

Q ss_pred             CCCCCCHHHHHHHHHHH----HHCCCCCCCCCCCEEEEEECH
Q ss_conf             58888989999999999----818888788788727998388
Q gi|254780399|r  548 SGRKMQSIEMNRLLREM----EKNPNSSQCNHGRPTFIKLKL  585 (594)
Q Consensus       548 ~gd~L~~~e~~~Li~~L----~~c~~P~~CpHGRPt~~~l~~  585 (594)
T Consensus       669 KGTGLGLAiVKkIvEeHGG~leL~da~--d~~GA~i~i~fp~  708 (712)
T COG5000         669 KGTGLGLAIVKKIVEEHGGRLELHNAP--DFDGAMIRIKFPL  708 (712)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEECCCC--CCCCCEEEEECCC
T ss_conf             666623999999999638827724789--9997679998365