HHsearch alignment for GI: 254780399 and conserved domain: PRK04184
>PRK04184 DNA topoisomerase VI subunit B; Validated.
Probab=99.36 E-value=5.2e-11 Score=98.80 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHHCCCC-----EEEEEEECCC--EEEEEEEECCCCCCHHHHHHHHCC-CCCCCCHHHHHH--CCCCC
Q ss_conf 9789999999877726996-----7999998098--439999988899889899987502-466563124411--21488
Q gi|254780399|r 22 RPSIAIKELIENSLDAESS-----RVETVIAGGG--KSFFQITDNGFGMTSEEIPMAVQR-HCTSKISDDFSN--IHTFG 91 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt-----~I~v~i~~~g--~~~i~V~DnG~Gi~~~dl~~~~~r-h~TSKi~~dl~~--i~t~G 91 (594)
T Consensus 35 al~ttvkE~VdNsLDAcEe~gILPdI~v~I~~~~~~~y~v~VeDNGpGI~~~~ip~vFGk~L~GSKf~~~rQsRGqqGiG 114 (533)
T PRK04184 35 ALYTTVKELVDNSLDACEEAGILPDIKVEIRRVGEDYYRVIVEDNGPGIPPEQIPKVFGKLLYGSKFHRLRQSRGQQGIG 114 (533)
T ss_pred HHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC
T ss_conf 79999999973317668860889865999998378569999944889988678889998885025324021147753524
Q ss_pred CCHHHHHHHHHH-EEEEEEEECCCCCCCEEEE--ECC----CCCCCCCC---CCCCCCCEEEEEHHHHHHHHHHHCCCCH
Q ss_conf 404899987620-2489998048986301551--101----00000211---0125675788521012112543103453
Q gi|254780399|r 92 FRGEALPSIGAV-SHLTLMSRPPQNNTGAQIA--ISG----EKISSVRP---VAMNPGTIVEVRDLFFTIPARLNFLKSE 161 (594)
Q Consensus 92 FRGEAL~sIa~v-s~l~i~s~~~~~~~~~~~~--~~~----g~~~~~~~---~~~~~GT~V~V~~LF~N~PvRrkflks~ 161 (594)
T Consensus 115 is~avlysQlTTGkP~~V~S~~~~~~~a~~~~l~iD~~kNep~i~~~~~~~~~~~~hGt~Ve~~-ieg~~~~~------- 186 (533)
T PRK04184 115 ISAAVLYAQMTTGKPVRVISSTGGSKKAYEFELKIDTEKNEPEILEREERDNWKRWHGTRVELE-LEGNWYRA------- 186 (533)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCEEECCCEECCCCCCCCEEEEEE-EEEEHHHH-------
T ss_conf 7888777631268865999647998526999999675778734533412047778884399999-97641544-------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEE
Q ss_conf 6899999999999873189974999987983079
Q gi|254780399|r 162 QVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195 (594)
Q Consensus 162 ~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~ 195 (594)
T Consensus 187 ---r~~v~eYlr~TaIvnPhA~I~f~~Pdg~~~~ 217 (533)
T PRK04184 187 ---KQGIYEYLKRTAIVNPHARITLKDPDGEELV 217 (533)
T ss_pred ---HCCHHHHHHHHHCCCCCEEEEEECCCCCEEE
T ss_conf ---2369999976510378449999889998799