HHsearch alignment for GI: 254780399 and conserved domain: PRK05559
>PRK05559 DNA topoisomerase IV subunit B; Reviewed.
Probab=98.86 E-value=5.6e-09 Score=84.16 Aligned_cols=220 Identities=15% Similarity=0.245 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHH-HCCCCCCCCHHHHHHC
Q ss_conf 69789999999877726----996799999809843999998889988989--------9987-5024665631244112
Q gi|254780399|r 21 ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEE--------IPMA-VQRHCTSKISDDFSNI 87 (594)
Q Consensus 21 ~~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~d--------l~~~-~~rh~TSKi~~dl~~i 87 (594)
T Consensus 36 ~Gl~hi~~EIldNavDe~~~g~~~~I~V~i~~dg--sIsV~dnGrGIPv~~h~~~~~~~~ElIft~LhaGgkfd~~~ykv 113 (633)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKKIEVTLHADG--SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKF 113 (633)
T ss_pred CCCEEEEEEEEECHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCCCEE
T ss_conf 8562888776551142765078976999997898--49999899654551756579761566100204578889985155
Q ss_pred CCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCCCC----CC--CCCCCEEEEEHHHHHHHHHHHCCCC
Q ss_conf 14884048999876202-48999804898630155110100000211----01--2567578852101211254310345
Q gi|254780399|r 88 HTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP----VA--MNPGTIVEVRDLFFTIPARLNFLKS 160 (594)
Q Consensus 88 ~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~~~----~~--~~~GT~V~V~~LF~N~PvRrkflks 160 (594)
T Consensus 114 -SGGlhGvGasvvNalS~~f~Vev~r~-gk-~y~q~f~~g~~~~~~~~i~~~~~~~~~GT~It----F~PD~~i--F-~~ 183 (633)
T PRK05559 114 -SGGLHGVGVSVVNALSERLEVEVKRD-GK-VYRQRFERGEPVTPLEVVGGTKGKRKTGTRVR----FWPDPKI--F-DS 183 (633)
T ss_pred -ECCCCCCCEEEEEEEECCEEEEEEEC-CE-EEEEEECCCEECCCCCEECCCCCCCCCCEEEE----EEECHHH--H-CC
T ss_conf -07877621267087305589999989-99-99999549909888513045678788834999----9988578--3-77
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 36899999999999873189974999987983079971788104899999732166654310022442036566662161
Q gi|254780399|r 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240 (594)
Q Consensus 161 ~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i~~~~~~~~i~G~is~P 240 (594)
T Consensus 184 ~~~~~d~l~~rl~~~A~l~~gl~I~lnder~~~~~F~~e---~Gi~dyv~~~~~~~~~i~~~~~~~-~~~~~veval~~- 258 (633)
T PRK05559 184 AKFSPERLKERLRSKAFLCPGLEITLNDERTGEETFHYE---NGLKDYLAELNEGKELLPVEPFEG-DEGEAVEWALAW- 258 (633)
T ss_pred CEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECC---CCHHHHHHHHHCCCCCCCCCEEEC-CCCCEEEEEEEE-
T ss_conf 254289999999998632799779998246773446647---619999998617997578642875-579759999994-
Q ss_pred CCCCCCCHHHHHHHCCCHH
Q ss_conf 1033232066775152100
Q gi|254780399|r 241 TFNRGNANQFYVFINGRTV 259 (594)
Q Consensus 241 ~~~r~~~~~q~ifVNgR~V 259 (594)
T Consensus 259 --~~~~~~~~~SFVN~I~T 275 (633)
T PRK05559 259 --LEGGSENIESYVNLIPT 275 (633)
T ss_pred --CCCCCCEEEEEECCCCC
T ss_conf --47888447656887057