HHsearch alignment for GI: 254780399 and conserved domain: PRK13837
>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=97.75 E-value=0.00017 Score=51.95 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC--------------EEEEEECCCCCCCCCHHHHHHHHHHHH--HHCCC
Q ss_conf 34678347777999899998669599960798--------------799995261115567899999999999--85788
Q gi|254780399|r 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPN--------------AIAIREIPAILSKKNIPQLLRDIIDEI--IDSST 525 (594)
Q Consensus 462 ~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~--------------~~~i~~iP~~l~~~~~~~~l~dll~~l--~~~~~ 525 (594)
T Consensus 701 ~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD~~p~~~g~~~~~~l~~~~p~lpVilsg- 779 (831)
T PRK13837 701 TVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVDQPSLGDSQLAIAALHAAAPTLPIILAG- 779 (831)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEC-
T ss_conf 7999859889999999999967996888689999999998389985399988999998799999998618997499976-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 66468999999997634866645888898999999999981888878
Q gi|254780399|r 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572 (594)
Q Consensus 526 ~~~~~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~ 572 (594)
T Consensus 780 -~~~~~~~~~~~~---~~~~~fL~KPfs~~~LA~avR~aL~~~r~~~ 822 (831)
T PRK13837 780 -SSLKMAAREALA---TAIAEILPKPISSRTLAYALRTALATARAAG 822 (831)
T ss_pred -CCCHHHHHCHHH---CCCCEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf -881443311022---2667065099999999999999984888876