HHsearch alignment for GI: 254780399 and conserved domain: TIGR02938

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..

Probab=97.01  E-value=0.00037  Score=49.51  Aligned_cols=87  Identities=20%  Similarity=0.301  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCC-CH
Q ss_conf             58998999999985221038842111122223467834777799989999866959996079879999526111556-78
Q gi|254780399|r  431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK-NI  509 (594)
Q Consensus       431 QHAAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP~~l~~~-~~  509 (594)
T Consensus       320 qa~~ag~e~~e~L~~~IP---~s~~e~~~--pVNlN~~lrdvi~l~T~rLLA~GIvVd-W~Pa----~~LP~~~G~e~~l  389 (496)
T TIGR02938       320 QALAAGREALEALEKVIP---QSDAEAVV--PVNLNQVLRDVITLLTERLLAAGIVVD-WQPA----AVLPAVLGSESRL  389 (496)
T ss_pred             HHHHHHHHHHHHHCCCCC---CCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCEEC-CCCC----CCCCHHHCCCHHH
T ss_conf             998863999997505788---77244546--642778999999861055755754151-6561----0162220785257


Q ss_pred             HHHHHHHHHHHHHCCCCC
Q ss_conf             999999999998578866
Q gi|254780399|r  510 PQLLRDIIDEIIDSSTTY  527 (594)
Q Consensus       510 ~~~l~dll~~l~~~~~~~  527 (594)
T Consensus       390 RslfK~LvdNAIeaM~~~  407 (496)
T TIGR02938       390 RSLFKALVDNAIEAMAQK  407 (496)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             899999999999985307