HHsearch alignment for GI: 254780399 and conserved domain: cd00782
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.97 E-value=8.5e-31 Score=241.03 Aligned_cols=122 Identities=38% Similarity=0.730 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89999973216665431002244203656666216110332320667751521000758889999875544279998079
Q gi|254780399|r 205 FPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284 (594)
Q Consensus 205 l~~ri~~i~G~~~~~~l~~i~~~~~~~~i~G~is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~ 284 (594)
T Consensus 1 l~~ri~~v~G~~~~~~l~~v~~~~~~~~i~G~is~p~~~r~~~~~q~~fVN~R~V~~~~l~~ai~~~y~~~~~~~~~P~~ 80 (122)
T cd00782 1 LKDRIAQVYGKEVAKNLIEVELESGDFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKGRYPVF 80 (122)
T ss_pred CHHHHHHHHCHHHHHCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 97799998199989608898755799999999978611568785479998897747789999999999975538998539
Q ss_pred EEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 999996065712475711112553597999999999789887
Q gi|254780399|r 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326 (594)
Q Consensus 285 vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L 326 (594)
T Consensus 81 vL~l~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L 122 (122)
T cd00782 81 VLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred EEEEEECHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHC
T ss_conf 999999989956754987458998088999999999999759