HHsearch alignment for GI: 254780399 and conserved domain: cd00782

>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.97  E-value=8.5e-31  Score=241.03  Aligned_cols=122  Identities=38%  Similarity=0.730  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             89999973216665431002244203656666216110332320667751521000758889999875544279998079
Q gi|254780399|r  205 FPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV  284 (594)
Q Consensus       205 l~~ri~~i~G~~~~~~l~~i~~~~~~~~i~G~is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~  284 (594)
T Consensus         1 l~~ri~~v~G~~~~~~l~~v~~~~~~~~i~G~is~p~~~r~~~~~q~~fVN~R~V~~~~l~~ai~~~y~~~~~~~~~P~~   80 (122)
T cd00782           1 LKDRIAQVYGKEVAKNLIEVELESGDFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKGRYPVF   80 (122)
T ss_pred             CHHHHHHHHCHHHHHCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             97799998199989608898755799999999978611568785479998897747789999999999975538998539


Q ss_pred             EEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             999996065712475711112553597999999999789887
Q gi|254780399|r  285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI  326 (594)
Q Consensus       285 vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L  326 (594)
T Consensus        81 vL~l~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L  122 (122)
T cd00782          81 VLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL  122 (122)
T ss_pred             EEEEEECHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHC
T ss_conf             999999989956754987458998088999999999999759