HHsearch alignment for GI: 254780399 and conserved domain: cd03483
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.97 E-value=5.8e-32 Score=249.43 Aligned_cols=123 Identities=29% Similarity=0.477 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCE----EEEEEEEECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCC
Q ss_conf 48999997321666543100224420----36566662161103323206677515210007588899998755442799
Q gi|254780399|r 204 NFPERISQVIGEDFINNAVELNEKSN----EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG 279 (594)
Q Consensus 204 ~l~~ri~~i~G~~~~~~l~~i~~~~~----~~~i~G~is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g 279 (594)
T Consensus 1 Slkd~I~~i~G~~~~~~Li~v~~~~~~~~~~~~v~G~is~P~~~~-~~~~~~~fVNgR~V~~~~l~~aI~~aY~~~l~~~ 79 (127)
T cd03483 1 STKDNIRSVYGAAVANELIEVEISDDDDDLGFKVKGLISNANYSK-KKIIFILFINNRLVECSALRRAIENVYANYLPKG 79 (127)
T ss_pred CHHHHHHHHCCHHHHHHCCEEECCCCCCCCEEEEEEEEECCCCCC-CCCCEEEEECCCEECCHHHHHHHHHHHHHHHHCC
T ss_conf 988999997099999605276532677434089999997854477-8787899990988778799999999999883088
Q ss_pred CCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 980799999960657124757111125535979999999997898875
Q gi|254780399|r 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327 (594)
Q Consensus 280 ~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~ 327 (594)
T Consensus 80 ~~P~~~L~i~i~p~~vDVNVHP~K~eVrf~~e~~I~~~i~~ai~~aLs 127 (127)
T cd03483 80 AHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127 (127)
T ss_pred CCCEEEEEEECCCCEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 986999999479521774569981579865989999999999999739