HHsearch alignment for GI: 254780399 and conserved domain: cd03483

>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.97  E-value=5.8e-32  Score=249.43  Aligned_cols=123  Identities=29%  Similarity=0.477  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCE----EEEEEEEECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCC
Q ss_conf             48999997321666543100224420----36566662161103323206677515210007588899998755442799
Q gi|254780399|r  204 NFPERISQVIGEDFINNAVELNEKSN----EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG  279 (594)
Q Consensus       204 ~l~~ri~~i~G~~~~~~l~~i~~~~~----~~~i~G~is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g  279 (594)
T Consensus         1 Slkd~I~~i~G~~~~~~Li~v~~~~~~~~~~~~v~G~is~P~~~~-~~~~~~~fVNgR~V~~~~l~~aI~~aY~~~l~~~   79 (127)
T cd03483           1 STKDNIRSVYGAAVANELIEVEISDDDDDLGFKVKGLISNANYSK-KKIIFILFINNRLVECSALRRAIENVYANYLPKG   79 (127)
T ss_pred             CHHHHHHHHCCHHHHHHCCEEECCCCCCCCEEEEEEEEECCCCCC-CCCCEEEEECCCEECCHHHHHHHHHHHHHHHHCC
T ss_conf             988999997099999605276532677434089999997854477-8787899990988778799999999999883088


Q ss_pred             CCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             980799999960657124757111125535979999999997898875
Q gi|254780399|r  280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN  327 (594)
Q Consensus       280 ~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~  327 (594)
T Consensus        80 ~~P~~~L~i~i~p~~vDVNVHP~K~eVrf~~e~~I~~~i~~ai~~aLs  127 (127)
T cd03483          80 AHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS  127 (127)
T ss_pred             CCCEEEEEEECCCCEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             986999999479521774569981579865989999999999999739