HHsearch alignment for GI: 254780399 and conserved domain: cd03485

>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.95  E-value=9.3e-29  Score=226.36  Aligned_cols=123  Identities=24%  Similarity=0.410  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEEECCCC--CCCCCCHHHHHHHCCCHHH-CHHHHHHHHHHHHHHCCC
Q ss_conf             4899999732166654310022442--0365666621611--0332320667751521000-758889999875544279
Q gi|254780399|r  204 NFPERISQVIGEDFINNAVELNEKS--NEITLQGYTGIPT--FNRGNANQFYVFINGRTVQ-DKFILSTIRTAYAETIPL  278 (594)
Q Consensus       204 ~l~~ri~~i~G~~~~~~l~~i~~~~--~~~~i~G~is~P~--~~r~~~~~q~ifVNgR~V~-~~~l~~AI~~aY~~~l~~  278 (594)
T Consensus         1 dlk~~I~~v~G~~~a~~li~i~~~~~~~~i~i~G~i~~p~~~~~r~~~~~q~~fVN~RpV~~~~~i~k~i~~~y~~~~~~   80 (132)
T cd03485           1 DHKEALARVLGTAVAANMVPVQSTDEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRK   80 (132)
T ss_pred             CHHHHHHHHHCHHHHHHCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCEECCCHHHHHHHHHHHHHHHHC
T ss_conf             98899999818998940628751578787899999816877545677872899991964668688999999999998625


Q ss_pred             C---CCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             9---98079999996065712475711112553597999999999789887
Q gi|254780399|r  279 G---RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI  326 (594)
Q Consensus       279 g---~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L  326 (594)
T Consensus        81 ~~~~r~P~~~L~i~i~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~al~~~~  131 (132)
T cd03485          81 SSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY  131 (132)
T ss_pred             CCCCCCCEEEEEEEECCCCEEECCCCCCCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             677679789999996731077533888648997488999999999999960