HHsearch alignment for GI: 254780399 and conserved domain: cd03486
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.95 E-value=9.2e-29 Score=226.39 Aligned_cols=122 Identities=19% Similarity=0.338 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCC-----
Q ss_conf 489999973216665431002244203656666216110332320667751521000758889999875544279-----
Q gi|254780399|r 204 NFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL----- 278 (594)
Q Consensus 204 ~l~~ri~~i~G~~~~~~l~~i~~~~~~~~i~G~is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~----- 278 (594)
T Consensus 1 Sll~~~~~iyG~~~~~~L~~V~~~~~~~~i~GyIs~~~~--~sk~~Q~ifVN~R~v~~~~l~~~i~~~~~~~~~~~~~~~ 78 (141)
T cd03486 1 SILSVFKQIYGLVLAQKLKEVSAKFQEYEVSGYISSEGH--YSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAVAKNKS 78 (141)
T ss_pred CHHHHHHHHHCHHHHHHEEEEECCCCCEEEEEEEECCCC--CCCCCEEEEECCEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 978999998688867006798613686899999808876--775206999867785027789999999875001244444
Q ss_pred --------------CCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf --------------9980799999960657124757111125535979999999997898875
Q gi|254780399|r 279 --------------GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327 (594)
Q Consensus 279 --------------g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~ 327 (594)
T Consensus 79 ~~~~~~~~~~~~~~~~yP~~vL~i~~p~~~~DVnvhP~K~eV~F~d~~~v~~~i~~~i~~fLk 141 (141)
T cd03486 79 SPQSKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCHHHEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 323323434556656688899999848489200347860289963768999999999999729