HHsearch alignment for GI: 254780399 and conserved domain: pfam08676
>pfam08676 MutL_C MutL C terminal dimerization domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognizes mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerization.
Probab=100.00 E-value=6.3e-35 Score=270.71 Aligned_cols=142 Identities=44% Similarity=0.822 Sum_probs=133.2
Q ss_pred CCCCEEEEECCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 05721131045510000258635400589989999999852210388421111222234678347777999899998669
Q gi|254780399|r 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484 (594)
Q Consensus 405 ~~~~~igQ~~~~yIl~~~~~gL~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~~~G 484 (594)
T Consensus 1 ~~grvigQ~~~~yIl~~~~~~l~liDQHaAhERi~yE~l~~~~~-~~~~~Q~Ll~P~~i~l~~~e~~~l~~~~~~l~~lG 79 (142)
T pfam08676 1 PLGKALGQVHGTYILAENEDGLYLVDQHAAHERILYEKLKSKLK-EGLQSQPLLIPLTLELSPEEAALLEEHKELLARLG 79 (142)
T ss_pred CCCCEEEEECCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 98415566758899998289889998599999999999999861-67765215789633169999999999999999779
Q ss_pred CEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 59996079879999526111556789999999999985788664689999999976348666458888
Q gi|254780399|r 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552 (594)
Q Consensus 485 f~~e~~g~~~~~i~~iP~~l~~~~~~~~l~dll~~l~~~~~~~~~~~~~~~~l~s~ACr~AIk~gd~L 552 (594)
T Consensus 80 f~~e~~g~~~~~i~~vP~~l~~~~~~~~i~~il~~l~~~~~-----~~~~~~~~~~AC~~aIk~g~~L 142 (142)
T pfam08676 80 FELEEFGPNSLIVRSVPALLRQQNLEELIRELLDELAEKGE-----ELLEELLATMACHSAIRAGRRL 142 (142)
T ss_pred EEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 39995589999999848555775899999999999885691-----6999999998779884389939