HHsearch alignment for GI: 254780399 and conserved domain: smart00853
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=99.95 E-value=2.7e-26 Score=208.62 Aligned_cols=134 Identities=37% Similarity=0.716 Sum_probs=124.1
Q ss_pred CCEEEEECCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 72113104551000025863540058998999999985221038842-11112222346783477779998999986695
Q gi|254780399|r 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485 (594)
Q Consensus 407 ~~~igQ~~~~yIl~~~~~gL~iIDQHAAhERI~yE~l~~~~~~~~~~-~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~~~Gf 485 (594)
T Consensus 2 ~~~igq~~~~yil~~~~~~l~iiDqhaa~eRi~~E~l~~~~~~~~~~~~Q~LL~P~~i~l~~~e~~~l~~~~~~l~~~Gf 81 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPVILELSPEEAALLEEHQELLARLGF 81 (136)
T ss_pred CCEEEEECCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCE
T ss_conf 72799883889999818978998869999999999999998537876442347763468999999999999999997795
Q ss_pred EEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99960798799995261115567899999999999857886646899999999763
Q gi|254780399|r 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541 (594)
Q Consensus 486 ~~e~~g~~~~~i~~iP~~l~~~~~~~~l~dll~~l~~~~~~~~~~~~~~~~l~s~A 541 (594)
T Consensus 82 ~~~~~g~~~i~i~~iP~~l~~~~~~~~i~~ll~~l~~~~-~~~~~~~~~~~~~s~A 136 (136)
T smart00853 82 ELEIFGGQSVILRSVPALLRQQNLQELIPELLDLLAEGG-STSLPQLVEALLASLA 136 (136)
T ss_pred EEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCC
T ss_conf 999659987999743801156689999999999998379-8568999999997229