HHsearch results for GI: 254780399 and protein with PDBid: 1kij_A
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.87 E-value=5.1e-07 Score=68.51 Aligned_cols=223 Identities=15% Similarity=0.222 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHHHC---C-CCEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHH-HCCCCCCCCHHHHHH
Q ss_conf 269789999999877726---9-96799999809843999998889988989--------9987-502466563124411
Q gi|254780399|r 20 IERPSIAIKELIENSLDA---E-SSRVETVIAGGGKSFFQITDNGFGMTSEE--------IPMA-VQRHCTSKISDDFSN 86 (594)
Q Consensus 20 i~~~~svVkELveNSlDA---g-At~I~v~i~~~g~~~i~V~DnG~Gi~~~d--------l~~~-~~rh~TSKi~~dl~~ 86 (594)
...+...+.|+|.||+|- | |++|.|.+...| .|.|.|||.||+-+- .+++ +..|+.||..+|-++
T Consensus 30 ~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg--~isV~ddGrGIPv~~h~~~~~~~~e~i~~~L~tg~nfd~~~~k 107 (390)
T 1kij_A 30 VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYK 107 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCC
T ss_pred CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCC--EEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 87221788766685666743699966999996998--5999988872664786677971019999898456765788753
Q ss_pred CCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCC-CCC----CCCCCCEEEEEHHHHHHHHHHHCCCC
Q ss_conf 214884048999876202-489998048986301551101000002-110----12567578852101211254310345
Q gi|254780399|r 87 IHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV-RPV----AMNPGTIVEVRDLFFTIPARLNFLKS 160 (594)
Q Consensus 87 i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~-~~~----~~~~GT~V~V~~LF~N~PvRrkflks 160 (594)
+ |-|--|-.....-+.| .++++++..+. .|...+..|..... .+. ....||+|+-. -=|.|-. .
T Consensus 108 ~-sgG~nGvGa~l~NalS~~f~v~v~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~gT~I~F~----PD~~iF~---~ 177 (390)
T 1kij_A 108 V-SGGLHGVGASVVNALSEWTVVEVFREGK--HHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK----PDPEIFG---N 177 (390)
T ss_dssp C-CSCSSTTSHHHHHHTEEEEEEEEEETTE--EEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE----ECHHHHT---T
T ss_pred C-CCCCCCCCCHHHHHCCHHEEEEEEECCE--EEEEEEECCCCCCCCEECCCCCCCCCEEEEEEE----ECHHHHC---C
T ss_conf 0-2675764427652325203899980433--799998488365772021667889980799999----5868745---6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 36899999999999873189974999987983079971788104899999732166--6543100224420365666621
Q gi|254780399|r 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTG 238 (594)
Q Consensus 161 ~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~--~~~~l~~i~~~~~~~~i~G~is 238 (594)
.......+...+++.|..+|.+.+.+.....+........ +.+.+....+.... +.+...........+.+.-.+.
T Consensus 178 ~~~~~~~i~~r~~~~a~l~~gl~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 255 (390)
T 1kij_A 178 LRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDK--GGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFL 255 (390)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCT--THHHHHHHHHTTTSCBSCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECC--CCHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEEEE
T ss_conf 6333899988889887533884675101678802322227--62677767530477613442101023332035788630
Q ss_pred CCCCCCCCCHHHHHHHCCCHH
Q ss_conf 611033232066775152100
Q gi|254780399|r 239 IPTFNRGNANQFYVFINGRTV 259 (594)
Q Consensus 239 ~P~~~r~~~~~q~ifVNgR~V 259 (594)
. +......|.-|||+-+-
T Consensus 256 ~---~~~~~~~~~SfVN~I~T 273 (390)
T 1kij_A 256 H---TQGYNAEILTYANMIPT 273 (390)
T ss_dssp E---BSSSCCEEEEEETTEEC
T ss_pred C---CCCCCEEEEEEEEEEEC
T ss_conf 3---79876578988635887