HHsearch results for GI: 254780399 and protein with PDBid: 1mu5_A

>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.88  E-value=1.7e-21  Score=172.58  Aligned_cols=173  Identities=20%  Similarity=0.231  Sum_probs=127.7

Q ss_pred             CHHHHHHHHHHHHHHCCCC-----EEEEEEE--CCC--EEEEEEEECCCCCCHHHHHHHHCCCCCCCCHH--HHHHCCCC
Q ss_conf             9789999999877726996-----7999998--098--43999998889988989998750246656312--44112148
Q gi|254780399|r   22 RPSIAIKELIENSLDAESS-----RVETVIA--GGG--KSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTF   90 (594)
Q Consensus        22 ~~~svVkELveNSlDAgAt-----~I~v~i~--~~g--~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~--dl~~i~t~   90 (594)
                      ++.++|||||+|||||+++     .|.|.|+  +.+  ...|.|+|||+||++++++.++.|+.||+-..  +..-...+
T Consensus        32 ~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i~~iF~r~~~~sk~~~~~~~G~~Gl  111 (471)
T 1mu5_A           32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGL  111 (471)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             69999999999999978855998716999997368886899999962899999999998650262567665036896213


Q ss_pred             CCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             840489998762024-8999804898630155110100000211012567578852101211254310345368999999
Q gi|254780399|r   91 GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT  169 (594)
Q Consensus        91 GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~I~  169 (594)
                      |++|.++.|.....+ ++|+|++.++..+|...+.... ...+|. ...+|++...++|+++||+.++..+.++..+.+.
T Consensus       112 Gl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~-~kn~p~-i~~~~~~~~~~~~~Gt~v~l~~~~~~~~~~~~i~  189 (471)
T 1mu5_A          112 GVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI-NKNEPI-IVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY  189 (471)
T ss_dssp             THHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECT-TTCCEE-EEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEC-CCCCCC-CCCCEEEECCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf             48999999997379469999944899737998732213-567765-6787066057666771699850301777777899


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCEEEE
Q ss_conf             999998731899749999879830799
Q gi|254780399|r  170 DVIRRMAIAYPKVSFTFSTIKSNRYKM  196 (594)
Q Consensus       170 ~~v~~~aL~~P~V~f~l~~~~~~~~~l  196 (594)
                      +.+++.||++|++.|+|...+.....+
T Consensus       190 eyl~rtAi~nPha~i~~~~p~~e~~~~  216 (471)
T 1mu5_A          190 EYIKRTYIITPYAEFIFKDPEGNVTYY  216 (471)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTCCEEEE
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCEEEE
T ss_conf             999887640887189998699974896