HHsearch results for GI: 254780399 and protein with PDBid: 1mu5_A
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.88 E-value=1.7e-21 Score=172.58 Aligned_cols=173 Identities=20% Similarity=0.231 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHHCCCC-----EEEEEEE--CCC--EEEEEEEECCCCCCHHHHHHHHCCCCCCCCHH--HHHHCCCC
Q ss_conf 9789999999877726996-----7999998--098--43999998889988989998750246656312--44112148
Q gi|254780399|r 22 RPSIAIKELIENSLDAESS-----RVETVIA--GGG--KSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTF 90 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt-----~I~v~i~--~~g--~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~--dl~~i~t~ 90 (594)
++.++|||||+|||||+++ .|.|.|+ +.+ ...|.|+|||+||++++++.++.|+.||+-.. +..-...+
T Consensus 32 ~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i~~iF~r~~~~sk~~~~~~~G~~Gl 111 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGL 111 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 69999999999999978855998716999997368886899999962899999999998650262567665036896213
Q ss_pred CCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 840489998762024-8999804898630155110100000211012567578852101211254310345368999999
Q gi|254780399|r 91 GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169 (594)
Q Consensus 91 GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~I~ 169 (594)
|++|.++.|.....+ ++|+|++.++..+|...+.... ...+|. ...+|++...++|+++||+.++..+.++..+.+.
T Consensus 112 Gl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~-~kn~p~-i~~~~~~~~~~~~~Gt~v~l~~~~~~~~~~~~i~ 189 (471)
T 1mu5_A 112 GVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI-NKNEPI-IVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 189 (471)
T ss_dssp THHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECT-TTCCEE-EEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEC-CCCCCC-CCCCEEEECCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 48999999997379469999944899737998732213-567765-6787066057666771699850301777777899
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCEEEE
Q ss_conf 999998731899749999879830799
Q gi|254780399|r 170 DVIRRMAIAYPKVSFTFSTIKSNRYKM 196 (594)
Q Consensus 170 ~~v~~~aL~~P~V~f~l~~~~~~~~~l 196 (594)
+.+++.||++|++.|+|...+.....+
T Consensus 190 eyl~rtAi~nPha~i~~~~p~~e~~~~ 216 (471)
T 1mu5_A 190 EYIKRTYIITPYAEFIFKDPEGNVTYY 216 (471)
T ss_dssp HHHHHHHHHCTTCEEEEECTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEEEECCCCCEEEE
T ss_conf 999887640887189998699974896