HHsearch results for GI: 254780399 and protein with PDBid: 1pvg_A

>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.60  E-value=2.2e-06  Score=63.98  Aligned_cols=128  Identities=16%  Similarity=0.074  Sum_probs=86.2

Q ss_pred             CCCHHHHHHHHHHHHHH---CC--CCEEEEEEE-CCCEEEEEEEECCCCCCHH--------HHHHH-HCCCCCCCCHHHH
Q ss_conf             26978999999987772---69--967999998-0984399999888998898--------99987-5024665631244
Q gi|254780399|r   20 IERPSIAIKELIENSLD---AE--SSRVETVIA-GGGKSFFQITDNGFGMTSE--------EIPMA-VQRHCTSKISDDF   84 (594)
Q Consensus        20 i~~~~svVkELveNSlD---Ag--At~I~v~i~-~~g~~~i~V~DnG~Gi~~~--------dl~~~-~~rh~TSKi~~dl   84 (594)
                      +.-+...+.|.|.||+|   ||  +++|.|.|. ++|  .|.|.|||.||+-+        -++++ +.-||-+|..++-
T Consensus        62 ~~Gl~~l~~EildNavDe~~~g~~~~~I~V~i~~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~  139 (418)
T 1pvg_A           62 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE  139 (418)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred             CCEEEEEEEEEEECHHHHHHCCCCCCEEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf             6600246568999802476516888779999967998--89999699014610436678641157887740355445775


Q ss_pred             HHCCCCCCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCC----CCC-CCCCCCEEEEEHHHHHHHHH
Q ss_conf             112148840489998762024-89998048986301551101000002----110-12567578852101211254
Q gi|254780399|r   85 SNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSV----RPV-AMNPGTIVEVRDLFFTIPAR  154 (594)
Q Consensus        85 ~~i~t~GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~GT~V~V~~LF~N~PvR  154 (594)
                      +. .|=|--|--.+.--++|. +++.+....+..-|...++.|.....    ... ....||+|+    |.-=|.|
T Consensus       140 yk-~SGGlhGvGasvvNalS~~f~vev~~~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~----F~PD~~i  210 (418)
T 1pvg_A          140 KK-VTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVT----FKPDLTR  210 (418)
T ss_dssp             CC-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEE----EEECGGG
T ss_pred             CE-ECCCCCCCCHHHHHHHHHHHHHEEEECCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEE----EEECHHH
T ss_conf             30-40787552640227663565317676149879999994684113442010135689953999----9838565