HHsearch results for GI: 254780399 and protein with PDBid: 1pvg_A
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.60 E-value=2.2e-06 Score=63.98 Aligned_cols=128 Identities=16% Similarity=0.074 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHH---CC--CCEEEEEEE-CCCEEEEEEEECCCCCCHH--------HHHHH-HCCCCCCCCHHHH
Q ss_conf 26978999999987772---69--967999998-0984399999888998898--------99987-5024665631244
Q gi|254780399|r 20 IERPSIAIKELIENSLD---AE--SSRVETVIA-GGGKSFFQITDNGFGMTSE--------EIPMA-VQRHCTSKISDDF 84 (594)
Q Consensus 20 i~~~~svVkELveNSlD---Ag--At~I~v~i~-~~g~~~i~V~DnG~Gi~~~--------dl~~~-~~rh~TSKi~~dl 84 (594)
+.-+...+.|.|.||+| || +++|.|.|. ++| .|.|.|||.||+-+ -++++ +.-||-+|..++-
T Consensus 62 ~~Gl~~l~~EildNavDe~~~g~~~~~I~V~i~~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~ 139 (418)
T 1pvg_A 62 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred CCEEEEEEEEEEECHHHHHHCCCCCCEEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 6600246568999802476516888779999967998--89999699014610436678641157887740355445775
Q ss_pred HHCCCCCCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCC----CCC-CCCCCCEEEEEHHHHHHHHH
Q ss_conf 112148840489998762024-89998048986301551101000002----110-12567578852101211254
Q gi|254780399|r 85 SNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSV----RPV-AMNPGTIVEVRDLFFTIPAR 154 (594)
Q Consensus 85 ~~i~t~GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~GT~V~V~~LF~N~PvR 154 (594)
+. .|=|--|--.+.--++|. +++.+....+..-|...++.|..... ... ....||+|+ |.-=|.|
T Consensus 140 yk-~SGGlhGvGasvvNalS~~f~vev~~~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~----F~PD~~i 210 (418)
T 1pvg_A 140 KK-VTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVT----FKPDLTR 210 (418)
T ss_dssp CC-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEE----EEECGGG
T ss_pred CE-ECCCCCCCCHHHHHHHHHHHHHEEEECCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEE----EEECHHH
T ss_conf 30-40787552640227663565317676149879999994684113442010135689953999----9838565