HHsearch results for GI: 254780399 and protein with PDBid: 1zxm_A
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.96 E-value=4.3e-08 Score=76.26 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHH---CC--CCEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHHH-CCCCCCCCHHHHH
Q ss_conf 26978999999987772---69--9679999980984399999888998898--------999875-0246656312441
Q gi|254780399|r 20 IERPSIAIKELIENSLD---AE--SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAV-QRHCTSKISDDFS 85 (594)
Q Consensus 20 i~~~~svVkELveNSlD---Ag--At~I~v~i~~~g~~~i~V~DnG~Gi~~~--------dl~~~~-~rh~TSKi~~dl~ 85 (594)
+.-+...|-|+|.||+| || |+.|.|.|...| ..|.|.|||.||+-+ -+++++ .-||-+|..+|-+
T Consensus 50 ~~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d~-~sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~y 128 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEK 128 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGC
T ss_pred CCEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECCC-CEEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 870058998999965548865579847999997799-9899998996532002156673210246778413156689862
Q ss_pred HCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCC----CCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCC
Q ss_conf 1214884048999876202-489998048986301551101000----00211012567578852101211254310345
Q gi|254780399|r 86 NIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKI----SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160 (594)
Q Consensus 86 ~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~----~~~~~~~~~~GT~V~V~~LF~N~PvRrkflks 160 (594)
. .|-|--|--.+.--++| ++++.+...+....|...+..+.. ....+.....||+|+ |.-=|.+-..-.=
T Consensus 129 k-~sgGlhGVG~svvNalS~~~~Vev~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~GT~I~----F~PD~~iF~~~~~ 203 (400)
T 1zxm_A 129 K-VTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCIT----FQPDLSKFKMQSL 203 (400)
T ss_dssp C-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEE----EEECGGGGTCSSC
T ss_pred E-EECCCCCCCHHHHHHCCHHHEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE----EECCCCCCCEEEE
T ss_conf 3-6346445252555110341145566302305677510235664554445577899957999----9857440144551
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 36899999999999873189974999
Q gi|254780399|r 161 EQVETNLITDVIRRMAIAYPKVSFTF 186 (594)
Q Consensus 161 ~~~e~~~I~~~v~~~aL~~P~V~f~l 186 (594)
+.-....+.+.+..+|-.+|++.+.+
T Consensus 204 ~~d~~~~l~~r~~~la~l~~~~~v~~ 229 (400)
T 1zxm_A 204 DKDIVALMVRRAYDIAGSTKDVKVFL 229 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 58999998877898627777418981