HHsearch results for GI: 254780399 and protein with PDBid: 3cwv_A
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622}
Probab=99.38 E-value=3.4e-10 Score=91.34 Aligned_cols=280 Identities=13% Similarity=0.113 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHH---CC-CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 78999999987772---69-967999998098439999988899889899987502466563124411214884048999
Q gi|254780399|r 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98 (594)
Q Consensus 23 ~~svVkELveNSlD---Ag-At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~dl~~i~t~GFRGEAL~ 98 (594)
+...|.|+|.||+| || |++|.|.+...| .|.|.|||.||+.+.+. .-|+.+|..++-+ -.+.|.-| .++
T Consensus 31 l~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg--~IsV~dnGrGIPv~~~~---~l~~g~~f~~~~~-~~~gG~~G-g~s 103 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTAENLV---RVATGAGFLGRPP-GDGWGWDS-MLV 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCHHHHH---HHHTTTTGGGSSC-CCSTTTTS-SHH
T ss_pred CEEEEEEEEECCHHHHHCCCCCEEEEEECCCC--CEEEEECCCCCEEEEEE---EEEECCCCCCCCC-CCCCCCCC-EEE
T ss_conf 55899888653220764488877999999999--69999289995220778---8741023368777-66534665-399
Q ss_pred HHHHHE-EEEEEEECCCCCCCEEEEECCCCCCC-------CC--CCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 876202-48999804898630155110100000-------21--101256757885210121125431034536899999
Q gi|254780399|r 99 SIGAVS-HLTLMSRPPQNNTGAQIAISGEKISS-------VR--PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168 (594)
Q Consensus 99 sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~-------~~--~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~I 168 (594)
..-++| ++++.++..+. -|+..++.|.... .+ +.....||+|+-. |-...| .........+
T Consensus 104 vvNalS~~~~Vev~r~~~--~~~~~f~~g~~~~~~~~~~~~k~~~~~~~~gT~i~F~------pD~~iF-~~~~~~~~~i 174 (369)
T 3cwv_A 104 VSLALSSRYQVDIWADGR--QWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV------PDATIF-EVLAFDRARL 174 (369)
T ss_dssp HHHHTEEEEEEEEEETTE--EEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE------ECTTTC-SCCCCCHHHH
T ss_pred EEEEEEEEEEEEEEECCE--EEEEEEEECCCCCCCCCCCCCEECCCCCCCCCEEEEE------CCCCCC-CCEEECHHHH
T ss_conf 999982089999997997--9999888572547883514403526766899789996------663554-4226527888
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 999999873189974999987983079971788104899999732166--654310022442036566662161103323
Q gi|254780399|r 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGN 246 (594)
Q Consensus 169 ~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~--~~~~l~~i~~~~~~~~i~G~is~P~~~r~~ 246 (594)
.+.+++.|.-+|.+.+.+.............. +.+.+-+..+.... +.+..+.++.+..+.++.-.+...+ ..
T Consensus 175 ~~~lr~~a~l~~gl~i~l~~~~~~~~~~~~~~--~g~~~fv~~l~~~~~~l~~~~~~~~~~~~~~~vEval~~~~---~~ 249 (369)
T 3cwv_A 175 SRRCNELAALAPGLRVSFADLQRGERTLWHLP--GGVAQWAHVLTEARPQLHPEPVVFDFTWDGLRVQCALQWCE---DE 249 (369)
T ss_dssp HHHHHHHHHHSTTCEEEEEETTTTEEEEEECT--THHHHHHHHHHTTSCBSSSSCEEEEEEETTEEEEEEEEEBS---SS
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCEEEEEEC--CCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEEEECC---CC
T ss_conf 64420044306996000258407944689735--74788999875146623547789997766553899999748---88
Q ss_pred CHHHHHHHCCCHHHC-----HHHHHHHHHHHHHHCCCC----------CCEEEEEEEEEEHHH--HCCCCCCHHHHHHHC
Q ss_conf 206677515210007-----588899998755442799----------980799999960657--124757111125535
Q gi|254780399|r 247 ANQFYVFINGRTVQD-----KFILSTIRTAYAETIPLG----------RYPVVVLLLEIDPRQ--VDVNVHPAKSYIRFR 309 (594)
Q Consensus 247 ~~~q~ifVNgR~V~~-----~~l~~AI~~aY~~~l~~g----------~~P~~vL~i~i~p~~--vDVNVHP~K~eVrf~ 309 (594)
...++-|||+=+=.+ ..+..|+..+...+.... ..-.+++++.++-.. .| ..+|. |+.
T Consensus 250 ~~~~~SFVN~I~T~~GGTHv~g~~~~l~k~i~~~~kk~k~~i~~~dIregL~~visV~~~~~nP~Fe---gQTKe--kL~ 324 (369)
T 3cwv_A 250 DSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVSGPRRQMAFA---GPTKE--LLA 324 (369)
T ss_dssp CCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEECCGGGCCBS---STTCC--SBC
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCCC---CCCCC--CCC
T ss_conf 6237863478748999886886999999999987431113587888752878999998789899807---84747--616
Q ss_pred CH---HHHHHHHHHHHHHHHHH
Q ss_conf 97---99999999978988753
Q gi|254780399|r 310 NP---TIIRNFIIQSIQKAINK 328 (594)
Q Consensus 310 de---~~i~~~i~~~i~~~L~~ 328 (594)
+. ..|...+.+.+...|.+
T Consensus 325 ~~~v~~~v~~~v~~~l~~~l~~ 346 (369)
T 3cwv_A 325 IPGLEEAIRKQLQPLFIELLRE 346 (369)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9879999999999999999997