RPSBLAST alignment of GI: 254780399 and protein with PDBid: 2pff

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 19/102 (18%)

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           ++ AI+    IP+  + I  E IDS + +  +  + NIL  M C    +S R +++    
Sbjct: 565 DLDAIIPFAAIPE--QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQ 622

Query: 559 RLLREMEKNPNSSQCNHGRPTF------IKLKLSDIEKLFGR 594
            +L      P S   NHG  TF       + KLS +E LF R
Sbjct: 623 VIL------PMSP--NHG--TFGGDGMYSESKLS-LETLFNR 653