RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein
[Candidatus Liberibacter asiaticus str. psy62]
(594 letters)
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag
repair, structural genomics consortium, SGC, protein
bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Length = 348
Score = 297 bits (762), Expect = 4e-81
Identities = 110/337 (32%), Positives = 177/337 (52%), Gaps = 9/337 (2%)
Query: 2 KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++ GG QI DNG
Sbjct: 8 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGT 67
Query: 62 GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
G+ E++ + +R TSK+ +D ++I T+GFRGEAL SI V+H+T+ ++
Sbjct: 68 GIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAY 127
Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
+ G+ + +P A N GT + V DLF+ I R LK+ E I +V+ R ++
Sbjct: 128 RASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVH 187
Query: 179 YPKVSFTFSTIKSNRYKMNFQST-NGNFPERISQVIGEDFINNAVELN--EKSNEITLQG 235
+SF+ K + ++ N + + I + G +E+ +K+ + G
Sbjct: 188 NAGISFSV--KKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNG 245
Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
Y ++ F +FIN R V+ + I T YA +P +P + L LEI P+ V
Sbjct: 246 YISNANYSVKK-CIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 304
Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
DVNVHP K + F + I + Q I+ + S
Sbjct: 305 DVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSS 341
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA
damage, nucleus, phosphop DNA binding protein, protein
binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Length = 367
Score = 289 bits (740), Expect = 1e-78
Identities = 87/361 (24%), Positives = 161/361 (44%), Gaps = 31/361 (8%)
Query: 2 KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
+I ++++ +++I +G++I + A+KEL++NS+DA ++++E + G + +DNG
Sbjct: 5 QIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGD 64
Query: 62 GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
G+ +H TSKI D + + T GFRGEAL S+ ++ L++++
Sbjct: 65 GIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADK 124
Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMAIA 178
I+S + N GT V V LF +P R F K+ + + VI+ AI
Sbjct: 125 LEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAII 184
Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFP--ERISQVIGEDFINNAVELN----------- 225
+ F+ I K ST N + IS V G + E++
Sbjct: 185 NAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNR 244
Query: 226 ------------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTA 271
+ +I ++GY +F R + ++ ++++N R V+ +L
Sbjct: 245 MLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEV 304
Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
Y +T ++P V L LE+ +DVNV P K I N + + ++ N++ +
Sbjct: 305 Y-KTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQEL 363
Query: 332 S 332
+
Sbjct: 364 A 364
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 285 bits (731), Expect = 2e-77
Identities = 87/352 (24%), Positives = 151/352 (42%), Gaps = 27/352 (7%)
Query: 2 KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
I+ + K ++QI +G+++ S A+KEL+ENSLDA ++ ++ + G +++DNG
Sbjct: 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGC 73
Query: 62 GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
G+ E +H TSKI D + + TFGFRGEAL S+ A+S +T+ + G
Sbjct: 74 GVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGT 133
Query: 120 QIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMAI 177
++ KI P GT V V+ LF T+P R F ++ + E + V+ I
Sbjct: 134 RLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCI 193
Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE--------- 226
+ + + + T G + E I V G+ + + + +
Sbjct: 194 ISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCE 253
Query: 227 ---------KSNEITLQGYTGIPT--FNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
N + G+ T R + ++ + FIN R + + Y
Sbjct: 254 EYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVY-HM 312
Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
+YP VVL + +D VD+NV P K I + ++ + S+ +
Sbjct: 313 YNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 272 bits (697), Expect = 1e-73
Identities = 128/330 (38%), Positives = 188/330 (56%), Gaps = 4/330 (1%)
Query: 1 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
M I+ L ++ NQIAAGE++ERP+ +KEL+ENSLDA ++R++ I GG +I DNG
Sbjct: 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 62
Query: 61 FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
G+ +E+ +A+ RH TSKI+ DD I + GFRGEAL SI +VS LTL SR +
Sbjct: 63 CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 122
Query: 119 AQIAISGEKISS-VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
Q G ++ V+P A GT +EV DLF+ PAR FL++E+ E N I ++IRR+A+
Sbjct: 123 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 182
Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
A V+ S + G R+ + G F+ A+ + + ++TL+G+
Sbjct: 183 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 242
Query: 238 GIPTFN-RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
P A Y ++NGR ++D+ I IR A + + + P VL LEIDP QVD
Sbjct: 243 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 302
Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
VNVHPAK +RF ++ +FI Q + +
Sbjct: 303 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 332
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA
repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis}
PDB: 3gab_A* 3kdk_A*
Length = 197
Score = 198 bits (503), Expect = 4e-51
Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
+ Q+H YI++Q +GL I+DQHAA ER+ +E R+ + Q ++ P
Sbjct: 8 IMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHY 67
Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
E +I +H ++L +G+ E FG N+ +R PA K +L+ +II +++DS
Sbjct: 68 STNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKN 127
Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
++ E M+C GSI++ R +++ E+ LL ++ + C HGRP I
Sbjct: 128 I-DIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHST 186
Query: 586 SDIEKLFGR 594
++EK+F R
Sbjct: 187 YEMEKMFKR 195
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer,
replication, signaling protein; HET: DNA MSE; 2.10A
{Escherichia coli} SCOP: d.292.1.1
Length = 188
Score = 151 bits (382), Expect = 5e-37
Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 16/181 (8%)
Query: 401 ATH--YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
+H G +H + + + + ++ A L ++ + +Q LL
Sbjct: 1 GSHMSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAP--VCAQPLL 58
Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
P + + E + + + L LGI + + IR +P L ++N+ L+ ++I
Sbjct: 59 IPLRLKVSAEEKSALEKAQSALAELGIDFQ-SDAQHVTIRAVPLPLRQQNLQILIPELIG 117
Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
+ +A + + + LL ++E+ C
Sbjct: 118 YLAKQ------SVFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERL-----CPQLVK 166
Query: 579 T 579
T
Sbjct: 167 T 167
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 90.4 bits (224), Expect = 1e-18
Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 22/199 (11%)
Query: 25 IAIKELIENSLDAESS---------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
++ELIENSLDA ++ + + DNG G+ +E+P A R
Sbjct: 35 QTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRV 94
Query: 76 CTSKISDDFSNIHTFGFRGEALPSIGAVS------HLTLMSRPPQNNTGAQIAISGEKIS 129
S + N T G G + + S + + + P + + I+
Sbjct: 95 LY---SSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI-DIN 150
Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
P+ + G++ E F ++ + I + I+R I P F F
Sbjct: 151 KNEPIIVERGSV-ENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDP 209
Query: 190 KSNRYKMNFQSTNGNFPER 208
+ N + P+
Sbjct: 210 EGNV--TYYPRLTNKIPKP 226
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 89.5 bits (220), Expect = 2e-18
Identities = 61/514 (11%), Positives = 129/514 (25%), Gaps = 45/514 (8%)
Query: 26 AIKELIENSLDAESS---------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
++ELIENSLDA ++ + + DNG G+ +E+P A R
Sbjct: 35 TVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVL 94
Query: 77 TSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
S ++ G + L S + P N+ I+ P+
Sbjct: 95 YSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPI 154
Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
+ VE F ++ + I + I+R I P F F + N
Sbjct: 155 IVE-RGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVT 213
Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
+ E+ + + + + + +
Sbjct: 214 YYPRLT--------------NKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLV 259
Query: 255 NGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
N + + L + + ++ V K FR+P
Sbjct: 260 NEFQSIGDTTAD-------KILELAGLKPNKKVKNLTEEEITRLVETFKKDEDFRSP--- 309
Query: 315 RNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
+ I + + + G+ PK + +
Sbjct: 310 SADSLSVIGEDLIELGLKKIFNPDFA----ASITRKPKAYQGHPFIVEAGVAFGGSIPVG 365
Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI-ACAQIHQNYIISQTTDGLVIVDQHA 433
+ P ++ V ++ I + A
Sbjct: 366 EEPIVLRYANKIPLIYDEKSDVIWKVVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSA 425
Query: 434 AHERL--IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
E + + ++ N+ ++ L E E + + +
Sbjct: 426 GKESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKY--IPEVSRSLA 483
Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
+ + + I + L +I + +D
Sbjct: 484 TFLASGNKELVSKYQNEISEGLFKLISKKLDLIN 517
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 80.2 bits (197), Expect = 1e-15
Identities = 32/184 (17%), Positives = 52/184 (28%), Gaps = 19/184 (10%)
Query: 26 AIKELIENSLDAESS-------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC-T 77
+KE ++N+LDA V+ G I DNG G+ E+IP +
Sbjct: 41 TVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYG 100
Query: 78 SKISD--DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
S+ G L + H ++S+ +
Sbjct: 101 SRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINT-----ST 155
Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL---ITDVIRRMAIAYPKVSFTFSTIKS 191
+ EVRD F ++ I + ++ AI P T
Sbjct: 156 NEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDG 215
Query: 192 NRYK 195
N
Sbjct: 216 NEEV 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 63.8 bits (155), Expect = 1e-10
Identities = 102/627 (16%), Positives = 187/627 (29%), Gaps = 276/627 (44%)
Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF-- 186
S RP+ ++ G++ E +P F+ S+ E P+ + F
Sbjct: 4 YSTRPLTLSHGSL-EHV---LLVPTASFFIASQLQEQFNKI---------LPEPTEGFAA 50
Query: 187 -STIKSN-----RYKMNF------QSTNGNFPERISQVIGE---DFI--NN----AVELN 225
+ ++ + + S G F + ++ + E ++ N+ A +L
Sbjct: 51 DDEPTTPAELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 226 E-------KSNEITLQGY------TGIPT--------F---NRGNANQFYVFINGR-TVQ 260
+ K+ E+ ++ Y P F GNA +F G+
Sbjct: 110 QENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-GGQGNTD 167
Query: 261 DKFILSTIRTAYAETIPLGRYPVVV---------LLLEI--DPRQVD------VNVH--- 300
D F +R Y +T Y V+V L E+ + +N+
Sbjct: 168 DYF--EELRDLY-QT-----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 301 ------PAKSY-----IRFRNPTIIRNFIIQSIQKAINKK-------------------- 329
P K Y I P I +IQ + K
Sbjct: 220 ENPSNTPDKDYLLSIPISC--PLI---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 330 -GISTSSVLSKKMIS----SFH-----------------QDNAPKTHLPK--YATSLTN- 364
G+ T+ ++ + SF + P T LP SL N
Sbjct: 275 QGLVTAVAIA---ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 365 -------------TQEKL--FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
TQE++ ++ + TN LP+ Q+ I+
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNK----TNSHLPAGK------------------QVEIS 369
Query: 410 CAQIHQNYIIS---QTTDGLVI----------VDQHAAHERLIFEKMRQDFNSTKITSQT 456
+N ++S Q+ GL + +DQ R+ F + R+ K +++
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS----RIPFSE-RK----LKFSNRF 420
Query: 457 LLTPEII------DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI-----------RE 499
L P + LL LI +DL + + F I I R
Sbjct: 421 L--P--VASPFHSHLLVPASDLIN---KDLVKNNVS---FNAKDIQIPVYDTFDGSDLRV 470
Query: 500 IPAILSKKNI-PQLLRDIIDEIID--SSTTYTLQDRIENILAT---------MACYGS-- 545
+I +++ II + ++T + AT + G
Sbjct: 471 -----LSGSISERIVDCIIRLPVKWETTTQFK---------ATHILDFGPGGASGLGVLT 516
Query: 546 --IRSGRKMQSIEMNRLLREMEKNPNS 570
+ G ++ I + ++ NP+
Sbjct: 517 HRNKDGTGVRVI----VAGTLDINPDD 539
Score = 46.9 bits (111), Expect = 1e-05
Identities = 90/551 (16%), Positives = 148/551 (26%), Gaps = 259/551 (47%)
Query: 2 KIRKLSEKIINQIAAGEIIERPSIAIKE--LIENSLDAESSRVETVIAGGGKSFFQITDN 59
+ K E I N I A + +RP L + ++++ + G G TD+
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQGN-----TDD 168
Query: 60 GFGMTSEEI--------PM------AVQRH--CTSKISDDFSNIHTFGF-------RGEA 96
F EE+ + + + D + T G
Sbjct: 169 YF----EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 97 LPS-------------IGAVS--HLTLMSR-----PPQNN------TG-AQ-----IAIS 124
P IG + H + ++ P + TG +Q +AI+
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 125 G-------EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
+ V LFF I R +
Sbjct: 285 ETDSWESFFVSVR---------KAITV--LFF-IGVR-----CYE--------------- 312
Query: 178 AYPKVSFTFSTIKSNRYKMNFQS-TNGN-FPE--------RISQVIGEDFINNAVELN-- 225
AYP S S ++ S N P QV +D++N + N
Sbjct: 313 AYPNTSLPPSILE--------DSLENNEGVPSPMLSISNLTQEQV--QDYVN---KTNSH 359
Query: 226 ---EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYP 282
K EI+L +NG ++ + +++ Y
Sbjct: 360 LPAGKQVEISL--------------------VNGA---KNLVV----SGPPQSL----YG 388
Query: 283 VVVLLLEID-PRQVDVNVHPAKSYIRF--RNPTIIRNFIIQSIQKAINKKGISTSSVLSK 339
+ + L + P +D +S I F R F L
Sbjct: 389 LNLTLRKAKAPSGLD------QSRIPFSERKLKFSNRF-------------------LP- 422
Query: 340 KMISS-FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-LPSDD---PTYS---- 390
++S FH +HL L + + L N++ + D P Y
Sbjct: 423 --VASPFH------SHL------LVPASDLI---NKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 391 ED------N-----------DPVE-----ESEATHYQL-----GIA--CAQIHQNYIISQ 421
D + PV+ + +ATH L G + H+N
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDFGPGGASGLGVLTHRN----- 519
Query: 422 TTDGL---VIV 429
DG VIV
Sbjct: 520 -KDGTGVRVIV 529
Score = 43.4 bits (102), Expect = 1e-04
Identities = 41/302 (13%), Positives = 73/302 (24%), Gaps = 130/302 (43%)
Query: 330 GISTSS-VLSKKMIS-SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
ST LS + P A+ L F + LP
Sbjct: 3 AYSTRPLTLSHGSLEHVLL---VPTASFF-IASQLQEQ----FNKI--------LPEPTE 46
Query: 388 TYSEDNDPVEESE-ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
++ D++P +E + LG Y+ S + +
Sbjct: 47 GFAADDEPTTPAELVGKF-LG---------YVSSLVE------PSKVGQFDQVLNLCLTE 90
Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL-- 504
F + LEG D+H L A+ N + + ++
Sbjct: 91 FEN--------------CYLEG---------NDIHALA--AKLLQENDTTLVKTKELIKN 125
Query: 505 -------SKKNIPQ-----LLR--------------------DIIDEIIDSSTTYTLQDR 532
+K+ + L R D +E+ D TY
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY--HVL 183
Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
+ +++ A L E+ + D EK+F
Sbjct: 184 VGDLIKFSA-----------------ETLSELIRTT-----------------LDAEKVF 209
Query: 593 GR 594
+
Sbjct: 210 TQ 211
Score = 34.9 bits (80), Expect = 0.048
Identities = 71/320 (22%), Positives = 117/320 (36%), Gaps = 115/320 (35%)
Query: 65 SEEIPMAVQRHCTSKISDDFSNI---H---TFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
S+E M + + TSK + D N H T+GF S L ++ P N T
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF-----------SILDIVINNPVNLT- 1673
Query: 119 AQIAISGEKISSVRP--VAMNPGTIVEVRDLFFTIPARLNFLKSEQV--ETNLITDVIRR 174
I GEK +R AM TIV+ + LK+E++ E N
Sbjct: 1674 --IHFGGEKGKRIRENYSAMIFETIVDGK------------LKTEKIFKEIN-------- 1711
Query: 175 MAIAYPKVSFTFST----IKSNRY---------KMNFQ--STNGNFPERIS---QVIGE- 215
S+TF + + + ++ K F+ + G P + +GE
Sbjct: 1712 ----EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 216 -------DF--INNAVELNEKSNEITLQGYT---GIPTFNRGNANQFYVFIN-GRTV--- 259
D I + VE+ + +G T +P G +N + IN GR
Sbjct: 1768 AALASLADVMSIESLVEV------VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 260 -QD--KFILSTI--RTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIR-FRNPTI 313
Q+ ++++ + RT + L+EI V+ + A +R T
Sbjct: 1822 SQEALQYVVERVGKRTGW--------------LVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 314 IRNFI-IQSI-----QKAIN 327
+ NFI +Q I QK+++
Sbjct: 1868 VLNFIKLQKIDIIELQKSLS 1887
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 38.6 bits (89), Expect = 0.004
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
++ AI+ IP+ + I E IDS + + + + NIL M C +S R +++
Sbjct: 565 DLDAIIPFAAIPE--QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQ 622
Query: 559 RLLREMEKNPNSSQCNHGRPTF------IKLKLSDIEKLFGR 594
+L P S NHG TF + KLS +E LF R
Sbjct: 623 VIL------PMSP--NHG--TFGGDGMYSESKLS-LETLFNR 653
Score = 29.4 bits (65), Expect = 2.3
Identities = 59/311 (18%), Positives = 110/311 (35%), Gaps = 65/311 (20%)
Query: 1 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
MK RK +++ R + IK+ +EN L+A E + + F
Sbjct: 1246 MKYRKR-----------QLVTREA-QIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE 1293
Query: 61 FGMTSEEIPMAVQRHCTSKISDDF-----------SNIHTFGFRGEALPSIGAVSHLTLM 109
+E A Q+ + +DF + T+G + +G S
Sbjct: 1294 IHNEAESQLRAAQQ----QWGNDFYKRDPRIAPLRGALATYGL---TIDDLGVASFHGTS 1346
Query: 110 SRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFT-----------IPARLNFL 158
++ N A I E + + NP ++ V F T + L L
Sbjct: 1347 TKANDKNESATI---NEMMKHLGRSEGNP--VIGVFQKFLTGHPKGAAGAWMMNGALQIL 1401
Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQ--VIGED 216
S + N D + ++ + V + T+K++ + T+ F ++ Q V+ D
Sbjct: 1402 NSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRA-VSITSFGFGQKGGQAIVVHPD 1460
Query: 217 FINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
++ A+ ++ NE Y + +A +F F NG + +K +S Y + +
Sbjct: 1461 YLYGAIT-EDRYNE-----YVAKVSAREKSAYKF--FHNG-MIYNKLFVSKEHAPYTDEL 1511
Query: 277 -------PLGR 280
PL R
Sbjct: 1512 EEDVYLDPLAR 1522
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 36.6 bits (84), Expect = 0.016
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 23 PSIAIKELIENSLDA------ESSRVETVIAGGG-----------KSFFQITDNGFGMTS 65
I ++ELI N+ DA S E +AG K+ +TD G GMT
Sbjct: 46 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTR 105
Query: 66 EEI 68
EE+
Sbjct: 106 EEL 108
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 36.2 bits (83), Expect = 0.018
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 23 PSIAIKELIENSLDA------ESSRVETVIAGGG-----------KSFFQITDNGFGMTS 65
I ++ELI N+ DA + + G G K I+DNG GMT
Sbjct: 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTR 87
Query: 66 EEI 68
+E+
Sbjct: 88 DEV 90
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 34.7 bits (79), Expect = 0.062
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 23 PSIAIKELIENSLDA------ESSRVETVIAGGG-----------KSFFQITDNGFGMTS 65
I ++ELI N+ DA + + G G K I+DNG GMT
Sbjct: 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTR 87
Query: 66 EEI 68
+E+
Sbjct: 88 DEV 90
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
morphogene, stress-induced morphogene, structural
genomics; NMR {Mus musculus} SCOP: d.52.6.1
Length = 113
Score = 34.4 bits (79), Expect = 0.076
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI----PMAVQRHCTSKIS 81
++E + L+AE VE + F++ + S + + R ++
Sbjct: 34 YLREKLRQDLEAEHVEVEDTTLNRCATSFRVL-----VVSAKFEGKPLLQRHRLVNECLA 88
Query: 82 DDFSNIHTF 90
++ +IH F
Sbjct: 89 EELPHIHAF 97
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.12
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 3 IRKL--SEKIINQIAAGEIIERPSIAIKELIE 32
++KL S K+ +A P++AIK +E
Sbjct: 22 LKKLQASLKLYADDSA------PALAIKATME 47
Score = 32.7 bits (73), Expect = 0.23
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 339 KKMISS---FHQDNAPKTHLPKYATSLTNTQE 367
KK+ +S + D+AP A ++ T E
Sbjct: 23 KKLQASLKLYADDSAP-------ALAIKATME 47
Score = 30.7 bits (68), Expect = 0.83
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 24/51 (47%)
Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
K L K SL KL Y++D+ P +AT
Sbjct: 19 KQALKKLQASL-----KL-------------------YADDSAPALAIKAT 45
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex,
HSP90, heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 33.2 bits (75), Expect = 0.19
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 17/63 (26%)
Query: 23 PSIAIKELIENSLDA------ESSRVETVIAGGGKSF-----------FQITDNGFGMTS 65
I ++ELI N+ DA +S + F +I D+G GMT
Sbjct: 27 KEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTK 86
Query: 66 EEI 68
E+
Sbjct: 87 AEL 89
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ));
histidine kinase, osmosensor, His-Asp phosphorelay
system, signal transduction; HET: ANP; NMR {Escherichia
coli} SCOP: d.122.1.3
Length = 161
Score = 31.0 bits (70), Expect = 0.80
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 26 AIKELIENSLDAESSRVE-TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
A+ ++ N+ + ++ + +++FQ+ D+G G+ E+ Q +
Sbjct: 51 AVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTI 110
Query: 85 S 85
S
Sbjct: 111 S 111
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, ATP-binding, cytoplasm, hydrolase,
membrane; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 30.8 bits (69), Expect = 0.92
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
AERF PNA IR LS + I QL D E
Sbjct: 309 AERFAPNANEIRLKTEELSVEGIKQLYMDCQSE 341
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A
{Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A*
1qye_A* 1u0y_A* 1yt2_A*
Length = 269
Score = 29.6 bits (66), Expect = 2.2
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 23 PSIAIKELIENSLDA------ESSRVETVIAGGGK-----------SFFQITDNGFGMTS 65
I ++ELI N+ DA S E +AG + + +TD G GMT
Sbjct: 29 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTR 88
Query: 66 EEI 68
EE+
Sbjct: 89 EEL 91
>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
acyltransferase, acetylation; HET: COA PG4; 1.53A
{Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A*
1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
Length = 759
Score = 28.7 bits (64), Expect = 3.6
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
K E+ L+ + + + P + ++ V++ + + Q Y
Sbjct: 545 KPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTY 594
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics,
protein structure initiative, PSI; HET: NAD; 1.95A
{Listeria innocua}
Length = 359
Score = 28.7 bits (62), Expect = 4.2
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRI 533
E G+ P+ A + K P + +D + ++S ++
Sbjct: 270 EPTPIKAGQGLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPIVQNEEVY 329
Query: 534 ENILATMACYGSIRSGRKMQSIE 556
+ + A + + + R + SIE
Sbjct: 330 QVLKLIEAIFEAAETNRTVHSIE 352
>1bvp_1 Bluetongue virus coat protein VP7; trimer; 2.60A {Bluetongue virus
10} SCOP: a.115.1.1 b.19.1.1 PDB: 2btv_P
Length = 349
Score = 28.3 bits (63), Expect = 4.5
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 110 SRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFT 150
IAI+ ++R V M P ++ + ++FF
Sbjct: 24 VLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFM 64
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 28.0 bits (62), Expect = 6.2
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 25 IAIKELIENSLDA------ESSRVETVIAGGG-----------KSFFQITDNGFGMTSEE 67
+ ++ELI N+ DA S E+V+ K+ ITD G GMT +
Sbjct: 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVD 108
Query: 68 I 68
+
Sbjct: 109 L 109
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.134 0.372
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,981,963
Number of extensions: 239063
Number of successful extensions: 754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 46
Length of query: 594
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 496
Effective length of database: 3,317,318
Effective search space: 1645389728
Effective search space used: 1645389728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)