BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] (594 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 594 Score = 1218 bits (3152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/594 (100%), Positives = 594/594 (100%) Query: 1 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG Sbjct: 1 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60 Query: 61 FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120 FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ Sbjct: 61 FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120 Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP Sbjct: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180 Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP Sbjct: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240 Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH Sbjct: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300 Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT Sbjct: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360 Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS Sbjct: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420 Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL Sbjct: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480 Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM Sbjct: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540 Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR Sbjct: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594 >gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 31.2 bits (69), Expect = 0.053, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 34/109 (31%) Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340 YP + + L +D + +D+++ A IR R P I +SS++ +K Sbjct: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKP-------------------IQSSSLIQRK 159 Query: 341 MISSFHQDNAPKTHLPKYAT--SLTNTQEKLFLQE----NRLSTNDLLP 383 +++ H+ YA L N +E L +QE N ++ DL+P Sbjct: 160 LVT---------IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] Length = 675 Score = 26.9 bits (58), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 8/59 (13%) Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTY-----TLQDRIEN---ILATMACYGSIRSGR 550 + +ILS NI QL +D+I + SS + TL + + + + T+ YG+ R+GR Sbjct: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 25.4 bits (54), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358 +Q+ + G+S+ + ISSF QDN T P Y Sbjct: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 24.6 bits (52), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351 ++D H K R T+ N I + I+K INK + ++ + + S F ++N P Sbjct: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 >gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 23.9 bits (50), Expect = 8.6, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 516 IIDEIIDSSTTYTLQDRIENILA 538 ++DEII+ S + DR +N LA Sbjct: 35 VLDEIINESYHSIVNDRFDNFLA 57 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.134 0.372 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 372,558 Number of Sequences: 1233 Number of extensions: 15975 Number of successful extensions: 50 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 9 length of query: 594 length of database: 328,796 effective HSP length: 79 effective length of query: 515 effective length of database: 231,389 effective search space: 119165335 effective search space used: 119165335 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)