Query gi|254780400|ref|YP_003064813.1| hypothetical protein CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs 109 out of 273
Neff 3.2
Searched_HMMs 33803
Date Wed Jun 1 12:31:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780400.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1iwm_A Outer membrane lipopro 69.6 3.1 9.1E-05 23.8 2.3 46 3-48 38-92 (158)
2 >1tjl_A DNAK suppressor protei 66.5 0.83 2.5E-05 27.2 -1.1 22 22-43 106-127 (132)
3 >1vet_B P14, late endosomal/ly 41.0 25 0.00075 18.3 3.0 40 8-47 70-109 (125)
4 >3iyj_F Major capsid protein L 32.6 7.6 0.00022 21.4 -0.8 24 32-55 431-454 (495)
5 >2kgo_A Uncharacterized protei 32.3 7.5 0.00022 21.5 -0.9 24 21-44 49-73 (108)
6 >1dzl_A Late major capsid prot 31.7 8.4 0.00025 21.2 -0.7 23 33-55 435-457 (505)
7 >2b8n_A Glycerate kinase, puta 30.9 42 0.0012 17.0 2.8 40 22-61 89-138 (227)
8 >1a81_A SYK kinase; complex (t 28.7 54 0.0016 16.3 3.0 23 15-37 24-49 (68)
9 >2jae_A L-amino acid oxidase; 25.5 58 0.0017 16.1 2.7 27 7-33 76-102 (179)
10 >1pya_B Pyruvoyl-dependent his 25.0 34 0.001 17.5 1.5 12 22-33 63-74 (189)
11 >2kq9_A DNAK suppressor protei 20.7 23 0.00069 18.5 -0.1 18 27-44 1-18 (32)
No 1
>>1iwm_A Outer membrane lipoprotein LOLB; unclosed beta barrel, protein transport; 1.90A {Escherichia coli} (A:29-186)
Probab=69.62 E-value=3.1 Score=23.78 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=37.1
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCEEEEE---------ECCCEECHHHCCCCCHH
Q ss_conf 12377669999849980992079889984---------14967067765427787
Q gi|254780400|r 3 NKVDENEASIRYKDGTFEIIRPGTYVVCA---------ITGQRIPLKKLCYWSVD 48 (71)
Q Consensus 3 nkm~~~~Akl~Y~~~~F~ii~~G~yV~CA---------Vsgk~IpL~~L~YWnVe 48 (71)
+-+..+.|+|.-.++...++.++.-+..| ++|-.+|++.|+||=--
T Consensus 38 ~PlG~~~~~l~~~~~~~~l~~~~g~~~~a~~~e~Ll~~~~G~~lPv~~L~~Wi~G 92 (158)
T 1iwm_A 38 NPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILG 92 (158)
T ss_dssp CTTSCEEEEEEEETTEEEEECTTSCEEEESCHHHHHHHHHSCCCCHHHHHHHTTT
T ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 7777017999985998999968998895699999999987884568999999738
No 2
>>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} (A:1-132)
Probab=66.45 E-value=0.83 Score=27.19 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=20.1
Q ss_pred EECCCEEEEEECCCEECHHHCC
Q ss_conf 2079889984149670677654
Q gi|254780400|r 22 IRPGTYVVCAITGQRIPLKKLC 43 (71)
Q Consensus 22 i~~G~yV~CAVsgk~IpL~~L~ 43 (71)
|+.|+|=+|..+|+.||++-|.
T Consensus 106 i~~G~YG~C~~Cge~I~~~RL~ 127 (132)
T 1tjl_A 106 VEDEDFGYCESCGVEIGIRRLE 127 (132)
T ss_dssp HHTTCCSBCSSSSCBCCHHHHH
T ss_pred HHCCCCCEECCCCCCCCHHHHH
T ss_conf 9779999619878806799983
No 3
>>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} (B:)
Probab=41.02 E-value=25 Score=18.28 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=36.2
Q ss_pred CEEEEEECCCCEEEEECCCEEEEEECCCEECHHHCCCCCH
Q ss_conf 6699998499809920798899841496706776542778
Q gi|254780400|r 8 NEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSV 47 (71)
Q Consensus 8 ~~Akl~Y~~~~F~ii~~G~yV~CAVsgk~IpL~~L~YWnV 47 (71)
+...++|..|..-+..-|+.++|.++++...|..++|=-.
T Consensus 70 ~~~~ie~~~g~v~i~~~g~~~L~v~~~~~~~lG~i~~~~~ 109 (125)
T 1vet_B 70 KFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQ 109 (125)
T ss_dssp CEEEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEECCCEEEEEECCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 8999993897999999676169999469887058999999
No 4
>>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1} (F:)
Probab=32.60 E-value=7.6 Score=21.44 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.2
Q ss_pred ECCCEECHHHCCCCCHHHCCCCCC
Q ss_conf 149670677654277878072259
Q gi|254780400|r 32 ITGQRIPLKKLCYWSVDRQVPYAN 55 (71)
Q Consensus 32 Vsgk~IpL~~L~YWnVe~QEaY~s 55 (71)
-..++-|.+.+++|+||+.|-..+
T Consensus 431 p~~k~DPy~~~~FW~VDL~ekfS~ 454 (495)
T 3iyj_F 431 IPAKEDPYAGFKFWNIDLKEKLSL 454 (495)
T ss_dssp TTSCCCGGGSSCCEEEECSSSCBS
T ss_pred CCCCCCCCCCCCEEEECCCHHCCC
T ss_conf 988889756772145446210354
No 5
>>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, metal-binding, zinc, zinc-finger; NMR {Escherichia coli k-12} (A:)
Probab=32.33 E-value=7.5 Score=21.47 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEECC-CEEEEEECCCEECHHHCCC
Q ss_conf 92079-8899841496706776542
Q gi|254780400|r 21 IIRPG-TYVVCAITGQRIPLKKLCY 44 (71)
Q Consensus 21 ii~~G-~yV~CAVsgk~IpL~~L~Y 44 (71)
-|+.| +|=.|-..|++||++-|.-
T Consensus 49 ri~~g~tyG~C~~Cg~~I~~~RL~A 73 (108)
T 2kgo_A 49 EIPRGESLDECEECGAPIPQARREA 73 (108)
T ss_dssp CSCSSSCCSBCTTTCCBCCHHHHHH
T ss_pred HHHCCCCCCCHHHCCCCCCHHHHHC
T ss_conf 8865997888211299324999960
No 6
>>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} (A:)
Probab=31.73 E-value=8.4 Score=21.16 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=19.9
Q ss_pred CCCEECHHHCCCCCHHHCCCCCC
Q ss_conf 49670677654277878072259
Q gi|254780400|r 33 TGQRIPLKKLCYWSVDRQVPYAN 55 (71)
Q Consensus 33 sgk~IpL~~L~YWnVe~QEaY~s 55 (71)
..++-|.+.+++|+||+.|-..+
T Consensus 435 ~ek~DPy~~~~FW~VDL~ekfS~ 457 (505)
T 1dzl_A 435 APKEDPLKKYTFWEVNLKEKFSA 457 (505)
T ss_dssp CCCCCTTTTSCCEEEECTTCCBS
T ss_pred CCCCCCCCCCCEEEECCCCCCCC
T ss_conf 88999756772035447210354
No 7
>>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:35-261)
Probab=30.94 E-value=42 Score=16.98 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=32.9
Q ss_pred EECCCEEEEEECC----------CEECHHHCCCCCHHHCCCCCCHHHHHH
Q ss_conf 2079889984149----------670677654277878072259999999
Q gi|254780400|r 22 IRPGTYVVCAITG----------QRIPLKKLCYWSVDRQVPYANAEASFE 61 (71)
Q Consensus 22 i~~G~yV~CAVsg----------k~IpL~~L~YWnVe~QEaY~s~e~~~~ 61 (71)
+.++|.|+|-+|| ..|+|+++.-+|-.+...=++.++-..
T Consensus 89 ~~~~dlvl~LiSGGgSALl~~P~~gitL~dk~~~~~~Ll~sGa~I~eiN~ 138 (227)
T 2b8n_A 89 LNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINT 138 (227)
T ss_dssp CCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 89987489985288540110489999999999999999858998799999
No 8
>>1a81_A SYK kinase; complex (transferase/peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} (A:157-224)
Probab=28.68 E-value=54 Score=16.30 Aligned_cols=23 Identities=26% Similarity=0.707 Sum_probs=19.2
Q ss_pred CCCCEEEE---ECCCEEEEEECCCEE
Q ss_conf 49980992---079889984149670
Q gi|254780400|r 15 KDGTFEII---RPGTYVVCAITGQRI 37 (71)
Q Consensus 15 ~~~~F~ii---~~G~yV~CAVsgk~I 37 (71)
.||+|-|- .+|+||+|-.++.+|
T Consensus 24 ~~G~FLVR~S~~~~~y~Lsv~~~~~v 49 (68)
T 1a81_A 24 TNGKFLIRARDNNGSYALCLLHEGKV 49 (68)
T ss_dssp CTTCEEEEECSSSSCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCEEEEEEECCEE
T ss_conf 88868987269999889999889978
No 9
>>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* (A:1-46,A:238-314,A:434-489)
Probab=25.49 E-value=58 Score=16.14 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEC
Q ss_conf 766999984998099207988998414
Q gi|254780400|r 7 ENEASIRYKDGTFEIIRPGTYVVCAIT 33 (71)
Q Consensus 7 ~~~Akl~Y~~~~F~ii~~G~yV~CAVs 33 (71)
+....+.|.+++=+..-..|||+||+.
T Consensus 76 ~~~V~Vt~~~gg~~~t~~aD~VI~aip 102 (179)
T 2jae_A 76 SEGVTVEYTAGGSKKSITADYAICTIP 102 (179)
T ss_dssp TTEEEEEEEETTEEEEEEESEEEECSC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 543101211687653100122212561
No 10
>>1pya_B Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} (B:1-189)
Probab=24.97 E-value=34 Score=17.50 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=9.4
Q ss_pred EECCCEEEEEEC
Q ss_conf 207988998414
Q gi|254780400|r 22 IRPGTYVVCAIT 33 (71)
Q Consensus 22 i~~G~yV~CAVs 33 (71)
.-||.||+||--
T Consensus 63 ~~PGa~viCAnK 74 (189)
T 1pya_B 63 PAPGSFIVCANK 74 (189)
T ss_dssp BCTTCEEEEEEE
T ss_pred CCCCCEEEECCC
T ss_conf 899756773046
No 11
>>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} (A:81-112)
Probab=20.65 E-value=23 Score=18.49 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.7
Q ss_pred EEEEEECCCEECHHHCCC
Q ss_conf 899841496706776542
Q gi|254780400|r 27 YVVCAITGQRIPLKKLCY 44 (71)
Q Consensus 27 yV~CAVsgk~IpL~~L~Y 44 (71)
|=+|-..|++||++-|.-
T Consensus 1 YG~C~~Cg~~I~~~RL~a 18 (32)
T 2kq9_A 1 FGTCVKCGKRISEDRLKA 18 (32)
T ss_dssp CSEETTTTEECCHHHHHH
T ss_pred CCCCHHCCCCCCHHHHHC
T ss_conf 584023199068999707
Done!