Query gi|254780400|ref|YP_003064813.1| hypothetical protein CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs 109 out of 273
Neff 3.2
Searched_HMMs 23785
Date Mon May 30 10:33:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780400.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tjl_A DNAK suppressor protein 72.8 0.39 1.6E-05 28.3 -0.9 24 21-44 105-128 (151)
2 2kq9_A DNAK suppressor protein 64.9 0.74 3.1E-05 26.6 -0.9 23 22-44 76-98 (112)
3 1iwm_A Outer membrane lipoprot 62.9 3.9 0.00016 22.3 2.5 46 3-48 66-120 (186)
4 1dzl_A Late major capsid prote 33.0 5.5 0.00023 21.4 -0.7 24 32-55 434-457 (505)
5 3oae_A Late major capsid prote 28.5 6.2 0.00026 21.0 -1.0 23 33-55 389-411 (428)
6 3i4o_A Translation initiation 27.4 15 0.00063 18.7 0.8 22 14-35 24-46 (79)
7 1vet_B P14, late endosomal/lys 27.3 41 0.0017 16.1 3.0 39 8-46 70-108 (125)
8 3a2k_A TRNA(Ile)-lysidine synt 27.2 9.7 0.00041 19.9 -0.2 20 19-38 12-31 (464)
9 2r5i_A L1 protein; HPV18, pent 25.6 7.9 0.00033 20.4 -0.9 23 33-55 389-411 (428)
10 2c43_A Aminoadipate-semialdehy 25.5 43 0.0018 16.0 2.9 42 17-58 115-166 (323)
11 1zvp_A Hypothetical protein VC 25.0 40 0.0017 16.2 2.6 27 21-47 18-44 (133)
12 1pya_B Pyruvoyl-dependent hist 25.0 21 0.0009 17.8 1.2 14 22-35 63-76 (229)
13 3iyj_F Major capsid protein L1 24.4 9.1 0.00038 20.0 -0.8 23 33-55 432-454 (495)
14 1qr0_A 4'-phosphopantetheinyl 21.4 29 0.0012 17.0 1.3 42 18-59 85-128 (228)
No 1
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=72.85 E-value=0.39 Score=28.27 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.2
Q ss_pred EEECCCEEEEEECCCEECHHHCCC
Q ss_conf 920798899841496706776542
Q gi|254780400|r 21 IIRPGTYVVCAITGQRIPLKKLCY 44 (71)
Q Consensus 21 ii~~G~yV~CAVsgk~IpL~~L~Y 44 (71)
=|+.|+|=+|-.+|++||++-|.-
T Consensus 105 RIe~GtYG~Ce~CGe~I~~~RL~a 128 (151)
T 1tjl_A 105 KVEDEDFGYCESCGVEIGIRRLEA 128 (151)
T ss_dssp HHHTTCCSBCSSSSCBCCHHHHHH
T ss_pred HHHCCCCCEECCCCCCCCHHHHHC
T ss_conf 986889997397788067999835
No 2
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str}
Probab=64.93 E-value=0.74 Score=26.59 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.4
Q ss_pred EECCCEEEEEECCCEECHHHCCC
Q ss_conf 20798899841496706776542
Q gi|254780400|r 22 IRPGTYVVCAITGQRIPLKKLCY 44 (71)
Q Consensus 22 i~~G~yV~CAVsgk~IpL~~L~Y 44 (71)
|..|+|=+|..+|++||++-|.-
T Consensus 76 I~~GtYG~C~~CGe~I~~~RL~a 98 (112)
T 2kq9_A 76 IASGTFGTCVKCGKRISEDRLKA 98 (112)
T ss_dssp HHHTCCSEETTTTEECCHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCHHHHHC
T ss_conf 97899790200199068999707
No 3
>1iwm_A Outer membrane lipoprotein LOLB; unclosed beta barrel, protein transport; 1.90A {Escherichia coli} SCOP: b.125.1.2 PDB: 1iwn_A*
Probab=62.85 E-value=3.9 Score=22.27 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCEEEEE---------ECCCEECHHHCCCCCHH
Q ss_conf 12377669999849980992079889984---------14967067765427787
Q gi|254780400|r 3 NKVDENEASIRYKDGTFEIIRPGTYVVCA---------ITGQRIPLKKLCYWSVD 48 (71)
Q Consensus 3 nkm~~~~Akl~Y~~~~F~ii~~G~yV~CA---------Vsgk~IpL~~L~YWnVe 48 (71)
+-++.+.++|.-.++.+.++..+..+..| ++|-.+|++.|.||=--
T Consensus 66 ~plG~~~~~i~~~~~~~~l~~~~g~~~~a~~~e~L~~~~lG~~lPv~~L~~Wl~G 120 (186)
T 1iwm_A 66 NPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILG 120 (186)
T ss_dssp CTTSCEEEEEEEETTEEEEECTTSCEEEESCHHHHHHHHHSCCCCHHHHHHHTTT
T ss_pred CCCCCEEEEEEECCCEEEEEECCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 2245359999985998999968997896699999999987884668999999738
No 4
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} SCOP: b.121.6.1
Probab=33.04 E-value=5.5 Score=21.37 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=20.3
Q ss_pred ECCCEECHHHCCCCCHHHCCCCCC
Q ss_conf 149670677654277878072259
Q gi|254780400|r 32 ITGQRIPLKKLCYWSVDRQVPYAN 55 (71)
Q Consensus 32 Vsgk~IpL~~L~YWnVe~QEaY~s 55 (71)
-..++-|.+.+++|+||+.|-..+
T Consensus 434 p~ek~DPy~~~~FW~VDl~er~S~ 457 (505)
T 1dzl_A 434 PAPKEDPLKKYTFWEVNLKEKFSA 457 (505)
T ss_dssp CCCCCCTTTTSCCEEEECTTCCBS
T ss_pred CCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 988899756772136447210354
No 5
>3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDU; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A
Probab=28.48 E-value=6.2 Score=21.03 Aligned_cols=23 Identities=30% Similarity=0.710 Sum_probs=19.6
Q ss_pred CCCEECHHHCCCCCHHHCCCCCC
Q ss_conf 49670677654277878072259
Q gi|254780400|r 33 TGQRIPLKKLCYWSVDRQVPYAN 55 (71)
Q Consensus 33 sgk~IpL~~L~YWnVe~QEaY~s 55 (71)
++++=|.+++++|+||+.|-..+
T Consensus 389 ~~keDPy~~~~FW~VDLtEr~S~ 411 (428)
T 3oae_A 389 SGGEDPLKKYTFWEVNLKEKFSA 411 (428)
T ss_dssp ---CCTTTTSCCEEEECTTTCBS
T ss_pred CCCCCCCCCCCEEEECCCHHCCC
T ss_conf 89889766761136547210254
No 6
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis}
Probab=27.39 E-value=15 Score=18.75 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=15.4
Q ss_pred ECCCCEEEE-ECCCEEEEEECCC
Q ss_conf 849980992-0798899841496
Q gi|254780400|r 14 YKDGTFEII-RPGTYVVCAITGQ 35 (71)
Q Consensus 14 Y~~~~F~ii-~~G~yV~CAVsgk 35 (71)
..++.|+|. +.|.-++|-++|+
T Consensus 24 l~~~~f~V~l~ng~~~~a~i~Gk 46 (79)
T 3i4o_A 24 LPNAMFRIELENGHKVLAHISGK 46 (79)
T ss_dssp ETTTEEEEEETTSCEEEEEECHH
T ss_pred CCCCEEEEEECCCCEEEEEECCH
T ss_conf 89978999979999999995763
No 7
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=27.26 E-value=41 Score=16.11 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=34.3
Q ss_pred CEEEEEECCCCEEEEECCCEEEEEECCCEECHHHCCCCC
Q ss_conf 669999849980992079889984149670677654277
Q gi|254780400|r 8 NEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWS 46 (71)
Q Consensus 8 ~~Akl~Y~~~~F~ii~~G~yV~CAVsgk~IpL~~L~YWn 46 (71)
..--+++.+|.+-+...|+.++|.++.....+.-|+|=-
T Consensus 70 ~~viie~~~G~v~i~~ag~~~L~v~a~~~~~lG~l~~~~ 108 (125)
T 1vet_B 70 KFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKA 108 (125)
T ss_dssp CEEEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEEECCCEEEEEECCCEEEEEEECCCCCCHHHHHHH
T ss_conf 799999289789999857516999946998804899999
No 8
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=27.22 E-value=9.7 Score=19.88 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=15.8
Q ss_pred EEEEECCCEEEEEECCCEEC
Q ss_conf 09920798899841496706
Q gi|254780400|r 19 FEIIRPGTYVVCAITGQRIP 38 (71)
Q Consensus 19 F~ii~~G~yV~CAVsgk~Ip 38 (71)
+..+++||.|+.||||-+=.
T Consensus 12 ~~l~~~~~~v~va~SGG~DS 31 (464)
T 3a2k_A 12 HQLLSEGAAVIVGVSGGPDS 31 (464)
T ss_dssp TCSSSCSSBEEEECCSSHHH
T ss_pred CCCCCCCCEEEEEECCHHHH
T ss_conf 38999839899998071999
No 9
>2r5i_A L1 protein; HPV18, pentamer, structure, type specific epitope, capsid, capsid protein, virion; 3.40A {Human papillomavirus type 18}
Probab=25.62 E-value=7.9 Score=20.40 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=19.6
Q ss_pred CCCEECHHHCCCCCHHHCCCCCC
Q ss_conf 49670677654277878072259
Q gi|254780400|r 33 TGQRIPLKKLCYWSVDRQVPYAN 55 (71)
Q Consensus 33 sgk~IpL~~L~YWnVe~QEaY~s 55 (71)
+.++=|.+.+++|+||+.|-..+
T Consensus 389 ~~k~DPy~~~~FW~VDL~er~S~ 411 (428)
T 2r5i_A 389 GGNKDPYDKLKFWNVDLKEKFSL 411 (428)
T ss_dssp --CCCTTTTSCCEEEECTTCCBS
T ss_pred CCCCCCCCCCCCEEECCCHHCCC
T ss_conf 88889756762037657321242
No 10
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, phosphopantetheine transferase, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A*
Probab=25.54 E-value=43 Score=15.98 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=28.6
Q ss_pred CCEEEEECCCEEEEEECCC-E--ECHHHCCC---CC----HHHCCCCCCHHH
Q ss_conf 9809920798899841496-7--06776542---77----878072259999
Q gi|254780400|r 17 GTFEIIRPGTYVVCAITGQ-R--IPLKKLCY---WS----VDRQVPYANAEA 58 (71)
Q Consensus 17 ~~F~ii~~G~yV~CAVsgk-~--IpL~~L~Y---Wn----Ve~QEaY~s~e~ 58 (71)
-+|-|=-.|++|+||++.. + |.++.++. ++ .++-+.++++++
T Consensus 115 l~FNISHsg~~vv~a~s~~~~VGVDIE~i~~~~~~~~~~~~~l~~~~fs~~E 166 (323)
T 2c43_A 115 FNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKE 166 (323)
T ss_dssp CEEEEEEETTEEEEEEESSSEEEEEEEECCCCSSSCHHHHHHHTGGGSCHHH
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 5587606658089999448885532277213345554679999997299999
No 11
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=24.99 E-value=40 Score=16.15 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=17.4
Q ss_pred EEECCCEEEEEECCCEECHHHCCCCCH
Q ss_conf 920798899841496706776542778
Q gi|254780400|r 21 IIRPGTYVVCAITGQRIPLKKLCYWSV 47 (71)
Q Consensus 21 ii~~G~yV~CAVsgk~IpL~~L~YWnV 47 (71)
.+.||+||.|.+....-....+..+.+
T Consensus 18 ~L~~g~yvf~~l~~~~~~~~~~~~~~~ 44 (133)
T 1zvp_A 18 ELMAGDYVFCTVNGALSDYLSLEPIAT 44 (133)
T ss_dssp EECSSCEEEEEECSCGGGGGGGCCSEE
T ss_pred EECCCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 888984899997785457556771699
No 12
>1pya_B Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_B 1ibu_B 1ibt_B 1ibv_B* 1ibw_B*
Probab=24.98 E-value=21 Score=17.82 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=10.9
Q ss_pred EECCCEEEEEECCC
Q ss_conf 20798899841496
Q gi|254780400|r 22 IRPGTYVVCAITGQ 35 (71)
Q Consensus 22 i~~G~yV~CAVsgk 35 (71)
.-||.||+||.-|-
T Consensus 63 ~~PGa~vicAnK~v 76 (229)
T 1pya_B 63 PAPGSFIVCANKGV 76 (229)
T ss_dssp BCTTCEEEEEEEEE
T ss_pred CCCCCEEEECCCCC
T ss_conf 89975676304652
No 13
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1}
Probab=24.36 E-value=9.1 Score=20.04 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=19.4
Q ss_pred CCCEECHHHCCCCCHHHCCCCCC
Q ss_conf 49670677654277878072259
Q gi|254780400|r 33 TGQRIPLKKLCYWSVDRQVPYAN 55 (71)
Q Consensus 33 sgk~IpL~~L~YWnVe~QEaY~s 55 (71)
..|.=|.+.+++|+||+.|-..+
T Consensus 432 p~keDPy~~~~FW~VDlter~S~ 454 (495)
T 3iyj_F 432 PAKEDPYAGFKFWNIDLKEKLSL 454 (495)
T ss_dssp TSCCCGGGSSCCEEEECSSSCBS
T ss_pred CCCCCCCCCCCEEEECCCHHCCC
T ss_conf 88889756772145446210354
No 14
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1 d.150.1.1
Probab=21.36 E-value=29 Score=17.04 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=31.2
Q ss_pred CEEEEECCCEEEEEECCCEECHH--HCCCCCHHHCCCCCCHHHH
Q ss_conf 80992079889984149670677--6542778780722599999
Q gi|254780400|r 18 TFEIIRPGTYVVCAITGQRIPLK--KLCYWSVDRQVPYANAEAS 59 (71)
Q Consensus 18 ~F~ii~~G~yV~CAVsgk~IpL~--~L~YWnVe~QEaY~s~e~~ 59 (71)
+|-|--.|++|.||+|..+|-+| ..+==..+..+-++++++.
T Consensus 85 ~fsiSHs~~~v~~a~s~~~vGIDiE~~~~~~~~~~~~~f~~~E~ 128 (228)
T 1qr0_A 85 HFNISHSGRWVIGAFDSQPIGIDIEKTKPISLEIAKRFFSKTEY 128 (228)
T ss_dssp EEEEEEETTEEEEEEESSCCEEEEEECCCCCHHHHSSSSCHHHH
T ss_pred EEEECCCCCCEEEEEECCCCCCCEEECCCCHHHHHHHCCCHHHH
T ss_conf 69866768807999714887650475062179998843899999
Done!