RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780400|ref|YP_003064813.1| hypothetical protein
CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
           2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
           3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A
          Length = 531

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 28  VVCAITGQRIPLKKLCYW 45
           V+  IT Q +       +
Sbjct: 502 VIKIITKQFVIFNNTYIY 519


>2h6f_B Protein farnesyltransferase beta subunit; ftase,
           farnesyltransferase, farnesyl transferase,
           prenyltransferase, CAAX, RAS, lipid modification,
           prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
           a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
           1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
           2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3e33_B* 1d8e_B*
           1fpp_B* ...
          Length = 437

 Score = 24.2 bits (52), Expect = 6.4
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 10  ASIRYKDGTFEIIRP----GTYVVCAITG-------QRIPLKKLCYWSVDRQVPY 53
           A  +  +G    +      G Y  C +         + + LK L  W   RQ+ +
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRF 284


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 633,624
Number of extensions: 23375
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 4
Length of query: 71
Length of database: 5,693,230
Length adjustment: 41
Effective length of query: 30
Effective length of database: 4,699,226
Effective search space: 140976780
Effective search space used: 140976780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)