HHsearch alignment for GI: 254780401 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=96.80 E-value=0.012 Score=39.56 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=99.2
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC
Q ss_conf 8898899823000788874899999999852473159876045787777558714567887704212332205--76346
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV 119 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V 119 (338)
T Consensus 99 ~P~vImmvG---LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~------------~RpAA---~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVG---LQGSGKTTTAGKLAKYLKKKGKKVLLVAADT------------YRPAA---IEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCEEEEEEE---CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC------------CCHHH---HHHHHHHHHHCCCCEEC
T ss_conf 985899981---5679748689999999997499458985056------------78689---99999999860985316
Q ss_pred ---CCCHH----HHHHHHCCCCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHC
Q ss_conf ---52012----2566410245747997183223--------------44123069999618433566553761365210
Q gi|254780401|r 120 ---TSDRK----IGVQMLLQEGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVP 178 (338)
Q Consensus 120 ---~~~R~----~~~~~~~~~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp 178 (338)
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd------A~~~A~a 234 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD------AVNTAKA 234 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH------HHHHHHH
T ss_conf 7788997999999999999749988999688733030999999999985539874899876444567------8999999
Q ss_pred CHHHHHHHHHHHHCCCCHH-------HHHHHCCCCHHHHHH--HHCCCCCCCCCEEE-EEECCCCHHHHHHHHHHH
Q ss_conf 0255665145442044124-------577631350111222--20132111686389-874155357899988740
Q gi|254780401|r 179 LSRQLSYVDAILYVGNKKN-------VISSIKNKSVYFAKL--KPRLTFDLSGKKVL-AFSGIADTEKFFTTVRQL 244 (338)
Q Consensus 179 ~~~~l~rad~vi~~~~~~~-------~~~~~~~~~i~~~~~--~~~~~~~l~~k~v~-afsGIa~P~~F~~~L~~~ 244 (338)
T Consensus 235 F~e~l~-itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~ 309 (451)
T COG0541 235 FNEALG-ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEV 309 (451)
T ss_pred HHHHCC-CCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 866269-864999714678762288856998789859974588735477749588999853732099999999986