HHsearch alignment for GI: 254780401 and conserved domain: COG0552

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=95.08  E-value=0.055  Score=34.75  Aligned_cols=74  Identities=22%  Similarity=0.255  Sum_probs=44.7

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HC--CCCCC---CCCH----
Q ss_conf             07888748999999998524731598760457877775587145678877042123322-05--76346---5201----
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RR--AVTIV---TSDR----  123 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~--~pv~V---~~~R----  123 (338)
T Consensus       147 VNG~GKTTTIaKLA~~l~~~g~~VllaA----------------~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa  210 (340)
T COG0552         147 VNGVGKTTTIAKLAKYLKQQGKSVLLAA----------------GDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA  210 (340)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEE----------------CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHH
T ss_conf             4888637179999999997898699982----------------334789999999999999599278259999808999


Q ss_pred             HHHHHHHCCCCCCEEEECCC
Q ss_conf             22566410245747997183
Q gi|254780401|r  124 KIGVQMLLQEGVDIIIMDDG  143 (338)
Q Consensus       124 ~~~~~~~~~~~~diiIlDDG  143 (338)
T Consensus       211 fDAi~~Akar~~DvvliDTA  230 (340)
T COG0552         211 FDAIQAAKARGIDVVLIDTA  230 (340)
T ss_pred             HHHHHHHHHCCCCEEEEECC
T ss_conf             99999999769999999675