HHsearch alignment for GI: 254780401 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=95.08 E-value=0.055 Score=34.75 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=44.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HC--CCCCC---CCCH----
Q ss_conf 07888748999999998524731598760457877775587145678877042123322-05--76346---5201----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RR--AVTIV---TSDR---- 123 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~--~pv~V---~~~R---- 123 (338)
T Consensus 147 VNG~GKTTTIaKLA~~l~~~g~~VllaA----------------~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 147 VNGVGKTTTIAKLAKYLKQQGKSVLLAA----------------GDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE----------------CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHH
T ss_conf 4888637179999999997898699982----------------334789999999999999599278259999808999
Q ss_pred HHHHHHHCCCCCCEEEECCC
Q ss_conf 22566410245747997183
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIlDDG 143 (338)
T Consensus 211 fDAi~~Akar~~DvvliDTA 230 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTA 230 (340)
T ss_pred HHHHHHHHHCCCCEEEEECC
T ss_conf 99999999769999999675