HHsearch alignment for GI: 254780401 and conserved domain: COG1663
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=646.55 Aligned_cols=315 Identities=39% Similarity=0.655 Sum_probs=279.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 873322488999999999999999999999740464--338898899823000788874899999999852473159876
Q gi|254780401|r 4 SPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQR--LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 4 ~p~fw~~~~~~~~~lL~Pls~iy~~~~~~~~~~~~~--~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
T Consensus 5 i~~~w~~~~~~l~~lL~PlS~ly~~i~~~r~~~~~~g~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 5 IERFWYGPSPWLAFLLLPLSWLYAFIAGLRRKLAKKGSYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS 84 (336)
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 00766076507999999999999999999998732466567887899855777789968899999999986697367980
Q ss_pred ECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCHHHHHHHHCC--CCCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf 04578777755871456788770421233220--5763465201225664102--4574799718322344123069999
Q gi|254780401|r 82 RGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDRKIGVQMLLQ--EGVDIIIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 82 RGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R~~~~~~~~~--~~~diiIlDDGfQh~~l~rdl~Ivl 157 (338)
T Consensus 85 RGYgg~~~~~~~~~~~~~~a~~~GDEPlLlA~~t~~pv~v~~~R~~~~~~l~~~~~~~diIi~DDG~Qh~rL~rD~eIvv 164 (336)
T COG1663 85 RGYGGKLKVVPLVDNIHTTAAEVGDEPLLLARRTGAPVAVSPDRKDAAKALLAAHLGCDIIVLDDGLQHYRLHRDFEIVV 164 (336)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCEEEEE
T ss_conf 57688876541025676786772846888755339968986429899999985178989999767431267643646999
Q ss_pred ECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHH-----HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 6184335665537613652100255665145442044124577-----63135011122220132111686389874155
Q gi|254780401|r 158 VNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVIS-----SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIA 232 (338)
Q Consensus 158 ~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa 232 (338)
T Consensus 165 vd~~r~fGng~~lPaGpLRep~~-rl~~ad~ii~~g~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~v~afaGIg 243 (336)
T COG1663 165 VDGQRGFGNGFLLPAGPLREPPK-RLKSADAIITNGGGSRADPIPMRLAPGHAPNLVAPGERSDVADLKGKRVVAFAGIG 243 (336)
T ss_pred EECCCCCCCCCCCCCCCCCCCHH-HHHCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCEECCHHHCCCCEEEEEEECC
T ss_conf 73664687864466876557755-55207489863877666621112043435101056501432325774599998537
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEE
Q ss_conf 35789998874010000122143323489899999999756479879985466343823334411122051788769895
Q gi|254780401|r 233 DTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVF 312 (338)
Q Consensus 233 ~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~ 312 (338)
T Consensus 244 ~P~rFf~tL~~~g~~~~~~~~FpDH~~f~~~~l~~l~~~~~~--~~Ll~TeKDaVKl~~~~~---~~~~~l~v~~~~~~~ 318 (336)
T COG1663 244 NPQRFFATLRNLGIQVVETLAFPDHYDFSAADLEDLAKKAQA--DGLLTTEKDAVKLRDFAP---ENVWNLPVLAIELSF 318 (336)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHCC--CEEEEECCCEEECCCCCC---HHHCCCEEEEEECCC
T ss_conf 839999999971765454364886233359889999863013--467861441054565332---010055246776054
Q ss_pred CCHHH-HHHHHHH
Q ss_conf 78789-9999999
Q gi|254780401|r 313 ENPDD-LTNLVEM 324 (338)
Q Consensus 313 ~~~~~-l~~~l~~ 324 (338)
T Consensus 319 e~~~~~i~~~~~~ 331 (336)
T COG1663 319 ELPDAKLLALLKR 331 (336)
T ss_pred CCHHHHHHHHHHH
T ss_conf 3256799999988