HHsearch alignment for GI: 254780401 and conserved domain: COG2403

Probab=98.56  E-value=7.1e-07  Score=69.47  Aligned_cols=235  Identities=20%  Similarity=0.221  Sum_probs=140.6

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE--CCCCCC-CCCE-----EEECCCCCHHHHCCHHHHHH
Q ss_conf             388988998230007888748999999998524731598760--457877-7755-----87145678877042123322
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR--GYGRKS-RISF-----RVDLEKHSAYDVGDEPLLLA  112 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR--GYg~~~-~~~~-----~v~~~~~~~~~vGDEp~lla  112 (338)
T Consensus       123 ~~ekPviaV~a-trtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~  201 (449)
T COG2403         123 KLEKPVIAVTA-TRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESY  201 (449)
T ss_pred             HHCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHC
T ss_conf             51485599997-23665567888999999986698237995570233773100189773776526422556668878743


Q ss_pred             --HCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCC-CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf             --0576346520122566410245747997183223-4412306999961843356655376136521002556651454
Q gi|254780401|r  113 --RRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHS-ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI  189 (338)
Q Consensus       113 --~~~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh-~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v  189 (338)
T Consensus       202 I~tg~~vlAGvdy~~vlke~~~-~aD~IlwdGgnndfPfvkpd~~Ivvvda~rpg~ei~~~p-Ge~~------irlAD~V  273 (449)
T COG2403         202 IPTGGGVLAGVDYGTVLKEGEK-EADFILWDGGNNDFPFVKPDLHIVVVDALRPGEEIGSFP-GELR------IRLADLV  273 (449)
T ss_pred             CCCCCCEEEEEEHHHHHHHHHH-HCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHCCCC-CCEE------EEECCEE
T ss_conf             6435534652048999987764-155899948887788525770599933888725652687-7315------3221289


Q ss_pred             HHCCCCHHHHHH-----------HCCCCHHHH--HHHHCCCCCCCCCEEEEEECCCCHHHHH-------HHHHH-HCCCC
Q ss_conf             420441245776-----------313501112--2220132111686389874155357899-------98874-01000
Q gi|254780401|r  190 LYVGNKKNVISS-----------IKNKSVYFA--KLKPRLTFDLSGKKVLAFSGIADTEKFF-------TTVRQ-LGALI  248 (338)
Q Consensus       190 i~~~~~~~~~~~-----------~~~~~i~~~--~~~~~~~~~l~~k~v~afsGIa~P~~F~-------~~L~~-~g~~i  248 (338)
T Consensus       274 IItkveea~~~kvrkI~~~I~~iNP~A~Vi~~~~~~~~~~~~~ieGKrvlvved--aPt~thgg~~y~agyla~~~~~~i  351 (449)
T COG2403         274 IITKVEEAMAEKVRKIVRNIEEINPKAEVILAASVFRPDPPEDIEGKRVLVVED--APTSTHGGMPYGAGYLAAKKGGEI  351 (449)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCEEEEEEC--CCCCCCCCHHHHHHHHHHHHCCEE
T ss_conf             996135133678999999998609984699602421137821056747999934--873012651455668888645606


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCC
Q ss_conf             012214332348989999999975647987998546634382
Q gi|254780401|r  249 EQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLH  290 (338)
Q Consensus       249 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~  290 (338)
T Consensus       352 ~~----vdPrpynrg~i~~~y~ky~~~~dilp~~gya~aq~~  389 (449)
T COG2403         352 VG----VDPRPYNRGVIREDYEKYPHDADILPTEGYAPAQDV  389 (449)
T ss_pred             EE----ECCCCCCCHHHHHHHHHCCCCCCCCHHCCCCHHHHH
T ss_conf             88----689855346799999866453551112044367889