HHsearch alignment for GI: 254780401 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=96.85 E-value=0.02 Score=37.82 Aligned_cols=202 Identities=17% Similarity=0.202 Sum_probs=107.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC---C
Q ss_conf 899823000788874899999999852473159876045787777558714567887704212332205--76346---5
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV---T 120 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V---~ 120 (338)
T Consensus 100 im~vG---lqGsGKTTT~aKLA~~~kk~g~kv~lvaaD------------t~RpaA~---eQL~~la~~~~v~~~~~~~~ 161 (433)
T PRK00771 100 ILLVG---LQGSGKTTTAAKLARYFQKKGLKVGVICAD------------TWRPGAY---EQLKQLCEKINVPFYGDPKE 161 (433)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEEECC------------CCCHHHH---HHHHHHHHHCCCCCCCCCCC
T ss_conf 99973---788978999999999999779946785067------------8836899---99999998638873178899
Q ss_pred CCHHHHHHHHCC--CCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHH
Q ss_conf 201225664102--45747997183223--------------44123069999618433566553761365210025566
Q gi|254780401|r 121 SDRKIGVQMLLQ--EGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLS 184 (338)
Q Consensus 121 ~~R~~~~~~~~~--~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ 184 (338)
T Consensus 162 ~dp~~i~~~a~~~~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a----~~F~~~~- 234 (433)
T PRK00771 162 KDAVKIVKEGLEKLKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQASEQA----KAFKEAV- 234 (433)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHH----HHHHHHC-
T ss_conf 99999999999984569889997765210409999999999877579768998654422--6789999----9998753-
Q ss_pred HHHHHHHCCCCHHH-------HHHHCCCCHHHHHH--HHCCCCCCCCCEEE-EEECCCCHHHHHHHHHHHCCC----CCC
Q ss_conf 51454420441245-------77631350111222--20132111686389-874155357899988740100----001
Q gi|254780401|r 185 YVDAILYVGNKKNV-------ISSIKNKSVYFAKL--KPRLTFDLSGKKVL-AFSGIADTEKFFTTVRQLGAL----IEQ 250 (338)
Q Consensus 185 rad~vi~~~~~~~~-------~~~~~~~~i~~~~~--~~~~~~~l~~k~v~-afsGIa~P~~F~~~L~~~g~~----i~~ 250 (338)
T Consensus 235 ~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~sLvEk~~~~~~e~~~~~~~ 314 (433)
T PRK00771 235 GIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLKSLLEKAEEVMDEEAEEDVE 314 (433)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88737997256788730542189887899568861787214886680889998708985899999999875599999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2214332348989999999975647
Q gi|254780401|r 251 CYSFGDHAHLSDKKIAYLLDQAQQK 275 (338)
Q Consensus 251 ~~~fpDHh~ys~~dl~~i~~~a~~~ 275 (338)
T Consensus 315 k--~~-~g~F~l~Df~~Q~~~i~km 336 (433)
T PRK00771 315 A--MM-KGKFTLKDMYKQLEAMNKM 336 (433)
T ss_pred H--HH-CCCCCHHHHHHHHHHHHHC
T ss_conf 8--75-2885699999999999810